Query 043637
Match_columns 693
No_of_seqs 626 out of 3660
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 06:51:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.9E-89 4.2E-94 754.2 72.8 627 33-692 77-703 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.9E-75 4E-80 643.4 62.7 547 32-615 177-727 (857)
3 PLN03218 maturation of RBCL 1; 100.0 2.5E-67 5.4E-72 565.1 57.1 529 40-641 368-907 (1060)
4 PLN03081 pentatricopeptide (PP 100.0 1.4E-65 2.9E-70 551.6 55.5 474 105-613 84-562 (697)
5 PLN03218 maturation of RBCL 1; 100.0 1.7E-63 3.8E-68 535.4 59.7 505 139-678 366-914 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 7.6E-64 1.7E-68 538.0 52.9 455 206-692 84-540 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-36 2.9E-41 345.3 69.1 641 41-691 158-882 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.9E-36 4.2E-41 344.0 69.1 643 38-691 121-815 (899)
9 PRK11447 cellulose synthase su 100.0 4E-27 8.6E-32 266.3 61.0 626 43-681 29-749 (1157)
10 PRK11447 cellulose synthase su 100.0 3.4E-25 7.4E-30 250.7 60.7 597 80-690 31-721 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 6.9E-23 1.5E-27 220.7 58.3 211 52-273 54-276 (987)
12 PRK09782 bacteriophage N4 rece 99.9 1.2E-21 2.5E-26 211.3 57.7 576 89-691 56-722 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 5.7E-21 1.2E-25 182.2 33.5 367 313-688 119-498 (966)
14 KOG2002 TPR-containing nuclear 99.9 3.7E-19 8E-24 179.1 47.8 634 43-689 42-759 (1018)
15 KOG2002 TPR-containing nuclear 99.9 2.7E-18 5.8E-23 173.1 45.4 576 60-641 112-743 (1018)
16 KOG4626 O-linked N-acetylgluco 99.9 9.8E-19 2.1E-23 167.1 34.2 273 342-656 219-500 (966)
17 PRK15174 Vi polysaccharide exp 99.8 2.3E-17 5E-22 174.7 39.1 342 289-640 15-378 (656)
18 PRK11788 tetratricopeptide rep 99.8 2.7E-18 5.8E-23 173.9 30.5 222 414-641 110-345 (389)
19 PRK11788 tetratricopeptide rep 99.8 5.9E-18 1.3E-22 171.4 32.8 260 410-674 68-346 (389)
20 TIGR00990 3a0801s09 mitochondr 99.8 6.2E-17 1.4E-21 172.4 41.4 419 246-680 129-576 (615)
21 PRK10049 pgaA outer membrane p 99.8 1.6E-16 3.4E-21 172.3 42.3 392 286-683 22-464 (765)
22 KOG2076 RNA polymerase III tra 99.8 1.4E-14 3E-19 145.8 51.0 630 40-673 137-893 (895)
23 KOG4422 Uncharacterized conser 99.8 5.1E-16 1.1E-20 142.2 37.3 327 42-422 116-479 (625)
24 KOG4422 Uncharacterized conser 99.8 1.7E-15 3.8E-20 138.8 40.0 442 108-641 116-588 (625)
25 TIGR00990 3a0801s09 mitochondr 99.8 3.1E-16 6.7E-21 167.1 41.5 247 390-641 308-569 (615)
26 KOG4318 Bicoid mRNA stability 99.8 3.5E-16 7.6E-21 156.0 34.0 483 30-536 13-620 (1088)
27 PRK15174 Vi polysaccharide exp 99.8 8.6E-16 1.9E-20 162.9 39.6 316 284-606 47-380 (656)
28 PRK14574 hmsH outer membrane p 99.8 4.2E-15 9E-20 157.7 44.5 439 216-682 41-520 (822)
29 PRK14574 hmsH outer membrane p 99.8 4.4E-14 9.5E-19 150.0 48.4 454 41-606 33-512 (822)
30 KOG0495 HAT repeat protein [RN 99.8 2.3E-12 5E-17 125.0 53.5 606 55-686 264-891 (913)
31 PRK10049 pgaA outer membrane p 99.8 3.6E-14 7.9E-19 154.0 46.4 106 514-624 361-470 (765)
32 KOG0495 HAT repeat protein [RN 99.8 3.9E-12 8.5E-17 123.4 53.2 568 91-688 265-859 (913)
33 KOG2076 RNA polymerase III tra 99.7 7.2E-13 1.6E-17 133.6 42.7 546 143-690 139-784 (895)
34 KOG4318 Bicoid mRNA stability 99.7 8.1E-13 1.8E-17 132.5 36.7 511 129-673 11-592 (1088)
35 KOG2003 TPR repeat-containing 99.7 4E-13 8.7E-18 124.4 30.2 202 423-629 502-709 (840)
36 KOG2003 TPR repeat-containing 99.6 7.4E-13 1.6E-17 122.7 29.8 453 215-687 207-701 (840)
37 KOG1915 Cell cycle control pro 99.6 2.7E-10 5.8E-15 106.8 38.7 447 189-674 84-584 (677)
38 KOG1126 DNA-binding cell divis 99.5 1.2E-12 2.6E-17 127.9 22.6 281 391-681 334-626 (638)
39 PF13429 TPR_15: Tetratricopep 99.5 2.2E-14 4.7E-19 137.1 10.6 252 416-674 13-276 (280)
40 KOG1173 Anaphase-promoting com 99.5 3.1E-11 6.6E-16 115.7 31.2 276 408-686 241-529 (611)
41 KOG1155 Anaphase-promoting com 99.5 1.3E-10 2.9E-15 108.5 34.3 358 276-638 161-531 (559)
42 PRK10747 putative protoheme IX 99.5 4.3E-11 9.4E-16 119.7 33.2 249 422-676 129-391 (398)
43 TIGR00540 hemY_coli hemY prote 99.5 6.4E-11 1.4E-15 119.2 33.8 255 418-674 125-398 (409)
44 KOG0985 Vesicle coat protein c 99.5 5.6E-09 1.2E-13 106.7 45.1 574 80-693 609-1326(1666)
45 KOG1155 Anaphase-promoting com 99.5 1E-10 2.3E-15 109.3 30.3 356 309-678 163-539 (559)
46 PF13429 TPR_15: Tetratricopep 99.5 6.5E-14 1.4E-18 133.8 9.1 240 448-691 13-259 (280)
47 PRK10747 putative protoheme IX 99.5 5.4E-11 1.2E-15 119.0 29.9 276 354-640 97-387 (398)
48 KOG0547 Translocase of outer m 99.5 6.6E-11 1.4E-15 111.2 27.4 211 423-640 338-563 (606)
49 KOG1915 Cell cycle control pro 99.5 1.2E-09 2.6E-14 102.5 34.3 401 281-688 109-548 (677)
50 TIGR00540 hemY_coli hemY prote 99.5 1.3E-10 2.8E-15 117.0 30.5 283 353-640 96-396 (409)
51 KOG0547 Translocase of outer m 99.4 3E-10 6.5E-15 107.0 29.3 217 453-675 336-566 (606)
52 KOG2047 mRNA splicing factor [ 99.4 4.1E-08 9E-13 96.0 44.4 196 413-612 389-618 (835)
53 KOG1126 DNA-binding cell divis 99.4 3.7E-11 7.9E-16 117.8 22.7 274 356-641 334-618 (638)
54 KOG2376 Signal recognition par 99.4 2.6E-09 5.7E-14 103.3 33.5 266 420-692 184-504 (652)
55 KOG1173 Anaphase-promoting com 99.4 3E-09 6.4E-14 102.4 33.1 93 39-133 13-107 (611)
56 KOG1174 Anaphase-promoting com 99.4 4.8E-09 1E-13 96.8 33.1 400 278-684 96-509 (564)
57 COG3071 HemY Uncharacterized e 99.4 3.3E-09 7.2E-14 97.9 31.2 282 354-674 97-389 (400)
58 KOG2047 mRNA splicing factor [ 99.4 5.3E-07 1.2E-11 88.5 53.7 216 445-664 479-712 (835)
59 COG2956 Predicted N-acetylgluc 99.3 2.2E-09 4.7E-14 95.9 26.2 216 353-571 47-277 (389)
60 COG2956 Predicted N-acetylgluc 99.3 5.3E-09 1.2E-13 93.5 28.2 261 323-586 48-323 (389)
61 COG3071 HemY Uncharacterized e 99.3 3.6E-09 7.8E-14 97.7 28.0 194 292-511 97-297 (400)
62 KOG0985 Vesicle coat protein c 99.3 1.9E-06 4.2E-11 88.9 55.0 132 526-672 1089-1220(1666)
63 KOG4162 Predicted calmodulin-b 99.3 1.4E-07 3E-12 94.7 39.4 132 545-681 652-789 (799)
64 KOG3785 Uncharacterized conser 99.3 1.9E-08 4.2E-13 91.0 29.5 148 527-677 338-492 (557)
65 TIGR02521 type_IV_pilW type IV 99.3 1.4E-09 3E-14 101.7 22.8 200 444-677 32-234 (234)
66 KOG3616 Selective LIM binding 99.3 1.3E-06 2.7E-11 87.1 42.6 534 49-641 739-1352(1636)
67 KOG3785 Uncharacterized conser 99.3 2.2E-08 4.8E-13 90.6 28.0 195 416-617 290-497 (557)
68 PF13041 PPR_2: PPR repeat fam 99.2 1.7E-11 3.6E-16 81.1 6.1 50 207-256 1-50 (50)
69 PRK12370 invasion protein regu 99.2 1.2E-09 2.5E-14 114.5 22.2 243 425-677 275-537 (553)
70 KOG4162 Predicted calmodulin-b 99.2 2.7E-07 5.9E-12 92.6 36.2 108 581-690 653-764 (799)
71 PF13041 PPR_2: PPR repeat fam 99.2 4.2E-11 9.1E-16 79.1 6.7 50 541-590 1-50 (50)
72 KOG1127 TPR repeat-containing 99.2 3.6E-07 7.9E-12 94.1 37.5 621 44-690 494-1190(1238)
73 KOG2376 Signal recognition par 99.2 4.8E-07 1E-11 88.0 36.5 447 115-604 19-517 (652)
74 KOG1156 N-terminal acetyltrans 99.2 2.2E-07 4.7E-12 91.4 34.2 443 122-570 21-509 (700)
75 TIGR02521 type_IV_pilW type IV 99.2 5.7E-09 1.2E-13 97.5 23.2 198 409-640 29-229 (234)
76 KOG1129 TPR repeat-containing 99.2 1.4E-09 3.1E-14 97.0 16.7 238 415-686 227-469 (478)
77 PRK11189 lipoprotein NlpI; Pro 99.2 1.3E-08 2.9E-13 97.3 23.5 192 479-678 66-268 (296)
78 PRK12370 invasion protein regu 99.2 7.4E-09 1.6E-13 108.6 23.6 243 390-641 275-533 (553)
79 KOG1129 TPR repeat-containing 99.2 2.5E-09 5.4E-14 95.6 16.5 203 481-689 227-438 (478)
80 KOG1840 Kinesin light chain [C 99.1 5.2E-08 1.1E-12 97.1 27.7 149 280-505 200-353 (508)
81 KOG3616 Selective LIM binding 99.1 6.9E-06 1.5E-10 82.1 41.1 87 583-672 1244-1351(1636)
82 KOG3617 WD40 and TPR repeat-co 99.1 4.8E-06 1E-10 84.2 39.7 523 52-641 738-1357(1416)
83 PF12569 NARP1: NMDA receptor- 99.1 2.8E-07 6.1E-12 93.2 30.8 279 287-571 12-333 (517)
84 KOG1156 N-terminal acetyltrans 99.1 7.2E-06 1.6E-10 81.1 38.7 435 153-667 17-503 (700)
85 COG3063 PilF Tfp pilus assembl 99.0 9.4E-08 2E-12 81.8 20.8 193 485-680 43-241 (250)
86 KOG3617 WD40 and TPR repeat-co 99.0 1.1E-06 2.4E-11 88.7 30.9 149 177-337 725-885 (1416)
87 KOG1127 TPR repeat-containing 99.0 3.9E-06 8.4E-11 86.9 35.4 575 93-690 474-1119(1238)
88 KOG1840 Kinesin light chain [C 99.0 5.7E-08 1.2E-12 96.8 21.5 237 410-674 198-478 (508)
89 COG3063 PilF Tfp pilus assembl 99.0 2E-07 4.4E-12 79.8 20.9 190 446-640 38-233 (250)
90 KOG1174 Anaphase-promoting com 99.0 2.5E-06 5.4E-11 79.4 29.2 366 312-690 99-481 (564)
91 PF04733 Coatomer_E: Coatomer 99.0 5.4E-08 1.2E-12 91.5 19.1 249 423-681 13-271 (290)
92 PF12569 NARP1: NMDA receptor- 99.0 4.8E-07 1E-11 91.5 26.8 285 317-606 11-333 (517)
93 KOG4340 Uncharacterized conser 98.9 3.7E-06 8E-11 74.8 26.1 260 423-688 124-456 (459)
94 PRK11189 lipoprotein NlpI; Pro 98.9 1.4E-06 2.9E-11 83.6 24.4 192 444-641 65-263 (296)
95 KOG4340 Uncharacterized conser 98.8 4.2E-06 9E-11 74.4 24.4 187 181-373 13-210 (459)
96 KOG0548 Molecular co-chaperone 98.8 1.7E-06 3.6E-11 83.6 22.9 85 152-237 11-98 (539)
97 KOG0624 dsRNA-activated protei 98.8 1.8E-05 3.9E-10 72.0 27.1 61 619-679 312-374 (504)
98 PRK15359 type III secretion sy 98.8 8.1E-08 1.8E-12 80.4 11.8 122 563-690 13-136 (144)
99 PF04733 Coatomer_E: Coatomer 98.8 3.6E-07 7.7E-12 86.0 17.1 222 417-648 41-271 (290)
100 KOG0624 dsRNA-activated protei 98.8 2.9E-05 6.2E-10 70.7 28.0 289 281-606 40-369 (504)
101 cd05804 StaR_like StaR_like; a 98.6 0.00014 3E-09 72.7 31.3 91 448-538 119-212 (355)
102 KOG1125 TPR repeat-containing 98.6 4E-06 8.7E-11 81.8 18.8 243 389-636 298-564 (579)
103 cd05804 StaR_like StaR_like; a 98.6 0.00013 2.8E-09 72.9 30.5 254 421-676 53-337 (355)
104 KOG0548 Molecular co-chaperone 98.6 0.00019 4E-09 70.0 29.4 102 50-153 10-114 (539)
105 PRK04841 transcriptional regul 98.6 0.00017 3.6E-09 82.2 34.1 257 419-677 460-762 (903)
106 PRK10370 formate-dependent nit 98.6 5.9E-06 1.3E-10 73.3 17.0 124 556-683 52-181 (198)
107 PLN02789 farnesyltranstransfer 98.5 4.4E-05 9.6E-10 73.0 23.8 221 452-677 46-304 (320)
108 KOG3081 Vesicle coat complex C 98.5 7.1E-05 1.5E-09 66.0 22.7 154 520-680 116-276 (299)
109 PLN02789 farnesyltranstransfer 98.5 1.3E-05 2.8E-10 76.6 20.2 200 487-691 47-266 (320)
110 PF12854 PPR_1: PPR repeat 98.5 1.2E-07 2.5E-12 55.9 3.8 32 609-640 2-33 (34)
111 PF12854 PPR_1: PPR repeat 98.5 1.1E-07 2.4E-12 56.0 3.7 32 173-204 2-33 (34)
112 TIGR03302 OM_YfiO outer membra 98.5 9E-06 1.9E-10 75.6 17.5 60 619-678 171-235 (235)
113 PRK04841 transcriptional regul 98.5 0.0014 3E-08 74.8 37.8 360 282-641 344-758 (903)
114 KOG1128 Uncharacterized conser 98.5 3.5E-06 7.7E-11 84.4 14.4 217 407-641 394-614 (777)
115 PRK15179 Vi polysaccharide bio 98.5 1.7E-05 3.6E-10 83.9 20.2 135 542-680 85-222 (694)
116 KOG1125 TPR repeat-containing 98.5 4.4E-06 9.5E-11 81.6 14.4 224 451-678 293-530 (579)
117 KOG1128 Uncharacterized conser 98.4 1E-05 2.2E-10 81.3 16.9 226 384-626 406-635 (777)
118 KOG1070 rRNA processing protei 98.4 7.5E-05 1.6E-09 80.5 23.1 240 429-674 1443-1699(1710)
119 COG4783 Putative Zn-dependent 98.4 8.5E-05 1.8E-09 71.6 21.1 137 521-676 315-455 (484)
120 PRK15359 type III secretion sy 98.4 1.2E-05 2.6E-10 67.4 13.8 97 541-641 22-119 (144)
121 TIGR03302 OM_YfiO outer membra 98.4 2.3E-05 5E-10 72.9 17.3 183 441-641 31-230 (235)
122 KOG3060 Uncharacterized conser 98.4 5.9E-05 1.3E-09 65.9 17.7 183 455-641 24-218 (289)
123 COG5010 TadD Flp pilus assembl 98.4 0.00014 3E-09 64.4 20.1 155 482-641 71-229 (257)
124 PRK14720 transcript cleavage f 98.4 3.9E-05 8.4E-10 81.9 20.1 144 409-571 29-177 (906)
125 KOG1070 rRNA processing protei 98.3 0.00015 3.3E-09 78.3 23.5 197 411-612 1458-1667(1710)
126 TIGR02552 LcrH_SycD type III s 98.3 7.2E-06 1.6E-10 68.6 11.5 113 565-681 5-120 (135)
127 KOG3081 Vesicle coat complex C 98.3 0.00025 5.4E-09 62.7 20.2 157 483-648 114-277 (299)
128 KOG3060 Uncharacterized conser 98.3 4.7E-05 1E-09 66.6 14.6 192 489-683 24-228 (289)
129 COG5010 TadD Flp pilus assembl 98.3 8.7E-05 1.9E-09 65.6 16.5 155 516-674 70-230 (257)
130 PRK10370 formate-dependent nit 98.2 0.00014 3E-09 64.7 17.6 125 457-617 53-181 (198)
131 KOG1914 mRNA cleavage and poly 98.2 0.0082 1.8E-07 59.0 38.5 173 459-632 347-528 (656)
132 PRK14720 transcript cleavage f 98.2 0.00066 1.4E-08 72.9 23.9 180 368-578 22-202 (906)
133 PF09976 TPR_21: Tetratricopep 98.2 0.00012 2.6E-09 61.7 15.1 125 545-673 14-145 (145)
134 COG3898 Uncharacterized membra 98.2 0.0041 8.9E-08 58.3 25.4 82 424-505 133-216 (531)
135 KOG1914 mRNA cleavage and poly 98.1 0.011 2.3E-07 58.2 33.0 148 357-505 347-500 (656)
136 COG4783 Putative Zn-dependent 98.1 0.00035 7.6E-09 67.5 19.0 129 544-677 307-439 (484)
137 PRK15179 Vi polysaccharide bio 98.1 0.00077 1.7E-08 71.6 22.9 127 477-606 86-216 (694)
138 KOG0553 TPR repeat-containing 98.1 1.6E-05 3.5E-10 71.5 8.2 93 589-683 92-186 (304)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00012 2.7E-09 71.3 15.0 122 516-641 173-295 (395)
140 TIGR00756 PPR pentatricopeptid 98.1 8E-06 1.7E-10 49.1 4.4 35 210-244 1-35 (35)
141 KOG2053 Mitochondrial inherita 98.0 0.033 7.1E-07 58.5 43.5 102 121-226 22-127 (932)
142 PF13812 PPR_3: Pentatricopept 98.0 1E-05 2.3E-10 48.2 3.9 33 109-141 2-34 (34)
143 PF07079 DUF1347: Protein of u 98.0 0.018 4E-07 55.4 33.3 321 315-641 133-522 (549)
144 TIGR00756 PPR pentatricopeptid 98.0 1.7E-05 3.6E-10 47.7 4.7 34 342-375 1-34 (35)
145 TIGR02552 LcrH_SycD type III s 98.0 0.00023 4.9E-09 59.4 13.1 87 518-606 23-113 (135)
146 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00014 3E-09 71.0 13.2 123 81-205 173-295 (395)
147 PF13812 PPR_3: Pentatricopept 98.0 1.4E-05 3E-10 47.6 4.1 33 210-242 2-34 (34)
148 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00015 3.3E-09 58.9 11.3 104 580-683 4-113 (119)
149 KOG2053 Mitochondrial inherita 97.9 0.05 1.1E-06 57.1 44.3 216 53-274 20-256 (932)
150 PRK10153 DNA-binding transcrip 97.9 0.00047 1E-08 70.8 16.0 140 540-681 334-488 (517)
151 PF09976 TPR_21: Tetratricopep 97.9 0.00092 2E-08 56.3 15.2 117 456-603 24-143 (145)
152 PLN03088 SGT1, suppressor of 97.9 0.00012 2.7E-09 71.9 11.2 102 549-654 8-111 (356)
153 PF13432 TPR_16: Tetratricopep 97.8 3.8E-05 8.1E-10 54.2 4.5 61 620-680 3-65 (65)
154 cd00189 TPR Tetratricopeptide 97.7 0.00028 6E-09 54.6 9.6 91 585-677 7-99 (100)
155 PF14938 SNAP: Soluble NSF att 97.7 0.0011 2.3E-08 63.2 14.4 147 519-678 101-269 (282)
156 PF05843 Suf: Suppressor of fo 97.7 0.001 2.2E-08 63.0 14.0 134 544-680 2-141 (280)
157 PRK02603 photosystem I assembl 97.6 0.00087 1.9E-08 58.5 11.8 117 543-679 35-153 (172)
158 PF12895 Apc3: Anaphase-promot 97.6 0.00013 2.9E-09 54.6 5.8 79 556-639 2-83 (84)
159 PF01535 PPR: PPR repeat; Int 97.6 7.3E-05 1.6E-09 43.3 3.4 31 210-240 1-31 (31)
160 PF12895 Apc3: Anaphase-promot 97.6 0.0001 2.2E-09 55.2 5.0 82 591-672 2-84 (84)
161 PF14559 TPR_19: Tetratricopep 97.6 3.9E-05 8.4E-10 54.8 2.5 59 589-649 2-61 (68)
162 PF01535 PPR: PPR repeat; Int 97.6 7.9E-05 1.7E-09 43.1 3.3 30 110-139 2-31 (31)
163 PRK15363 pathogenicity island 97.6 0.0019 4.2E-08 53.2 12.3 103 535-641 26-130 (157)
164 PF13414 TPR_11: TPR repeat; P 97.6 0.00013 2.8E-09 52.2 5.0 65 613-677 2-69 (69)
165 PRK15363 pathogenicity island 97.6 0.0027 5.8E-08 52.4 12.8 94 517-612 40-137 (157)
166 PF14938 SNAP: Soluble NSF att 97.6 0.01 2.2E-07 56.6 18.8 106 445-550 157-275 (282)
167 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0021 4.5E-08 52.1 12.4 95 545-641 4-103 (119)
168 PF08579 RPM2: Mitochondrial r 97.5 0.00079 1.7E-08 51.1 8.5 80 111-190 28-116 (120)
169 KOG2041 WD40 repeat protein [G 97.5 0.09 1.9E-06 53.6 24.3 154 291-469 746-904 (1189)
170 KOG2041 WD40 repeat protein [G 97.5 0.17 3.7E-06 51.6 27.1 220 93-342 679-910 (1189)
171 cd00189 TPR Tetratricopeptide 97.4 0.0018 3.9E-08 49.9 10.4 91 546-640 3-94 (100)
172 KOG0550 Molecular chaperone (D 97.4 0.063 1.4E-06 51.2 21.4 154 451-606 177-349 (486)
173 PF10037 MRP-S27: Mitochondria 97.4 0.0012 2.6E-08 64.9 10.7 118 74-191 63-186 (429)
174 PF04840 Vps16_C: Vps16, C-ter 97.4 0.13 2.7E-06 49.5 30.7 111 514-641 179-289 (319)
175 PF06239 ECSIT: Evolutionarily 97.4 0.0027 5.8E-08 55.0 11.2 118 140-272 44-167 (228)
176 PF13281 DUF4071: Domain of un 97.4 0.016 3.4E-07 55.9 17.6 158 520-680 149-339 (374)
177 PF08579 RPM2: Mitochondrial r 97.3 0.0035 7.6E-08 47.7 9.8 79 345-423 29-116 (120)
178 PRK10866 outer membrane biogen 97.3 0.081 1.8E-06 48.8 20.9 61 449-509 38-101 (243)
179 PF10037 MRP-S27: Mitochondria 97.3 0.0025 5.4E-08 62.8 11.5 116 177-292 65-186 (429)
180 KOG1538 Uncharacterized conser 97.3 0.079 1.7E-06 53.4 21.3 50 166-236 623-672 (1081)
181 KOG0553 TPR repeat-containing 97.3 0.0023 5E-08 58.1 10.1 99 486-587 90-191 (304)
182 PF04840 Vps16_C: Vps16, C-ter 97.3 0.18 4E-06 48.4 25.7 106 246-363 179-284 (319)
183 PF12688 TPR_5: Tetratrico pep 97.3 0.0078 1.7E-07 47.9 12.0 94 548-641 6-102 (120)
184 PRK02603 photosystem I assembl 97.3 0.0073 1.6E-07 52.7 13.2 88 511-600 34-128 (172)
185 PRK10803 tol-pal system protei 97.3 0.0027 6E-08 58.8 10.7 101 581-681 146-252 (263)
186 PLN03088 SGT1, suppressor of 97.3 0.0045 9.7E-08 61.0 12.8 86 519-606 9-98 (356)
187 CHL00033 ycf3 photosystem I as 97.3 0.0032 6.9E-08 54.7 10.6 61 545-605 37-99 (168)
188 PF05843 Suf: Suppressor of fo 97.2 0.0081 1.8E-07 56.9 13.9 140 444-586 2-148 (280)
189 PF06239 ECSIT: Evolutionarily 97.2 0.0019 4.1E-08 55.9 8.5 96 98-193 35-153 (228)
190 KOG2280 Vacuolar assembly/sort 97.2 0.27 5.9E-06 50.9 24.6 340 35-399 425-793 (829)
191 PF13428 TPR_14: Tetratricopep 97.2 0.00046 1E-08 43.7 3.4 42 648-689 3-44 (44)
192 PF14559 TPR_19: Tetratricopep 97.2 0.0014 3E-08 46.6 6.3 49 555-605 3-52 (68)
193 PF13371 TPR_9: Tetratricopept 97.2 0.00079 1.7E-08 48.8 5.0 64 622-685 3-68 (73)
194 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.26 5.6E-06 47.8 28.9 133 543-679 397-535 (660)
195 KOG1538 Uncharacterized conser 97.2 0.18 4E-06 51.0 22.2 94 536-641 740-844 (1081)
196 COG4700 Uncharacterized protei 97.2 0.064 1.4E-06 45.1 16.1 125 508-637 85-216 (251)
197 PRK10153 DNA-binding transcrip 97.2 0.021 4.5E-07 59.0 16.7 60 544-605 421-480 (517)
198 CHL00033 ycf3 photosystem I as 97.1 0.012 2.6E-07 51.1 12.7 100 579-678 36-152 (168)
199 COG4235 Cytochrome c biogenesi 97.0 0.019 4.1E-07 52.7 13.2 101 577-679 155-260 (287)
200 COG4700 Uncharacterized protei 97.0 0.14 2.9E-06 43.2 16.4 133 482-618 94-231 (251)
201 PF13525 YfiO: Outer membrane 97.0 0.16 3.4E-06 45.6 18.8 176 449-633 11-197 (203)
202 KOG2280 Vacuolar assembly/sort 96.8 0.78 1.7E-05 47.7 31.5 112 510-637 682-793 (829)
203 PF13414 TPR_11: TPR repeat; P 96.8 0.008 1.7E-07 42.8 7.5 63 542-606 2-66 (69)
204 KOG2796 Uncharacterized conser 96.8 0.069 1.5E-06 47.6 14.2 132 547-679 181-319 (366)
205 KOG1130 Predicted G-alpha GTPa 96.7 0.017 3.7E-07 54.7 10.8 130 477-606 195-343 (639)
206 KOG2796 Uncharacterized conser 96.7 0.12 2.7E-06 46.1 15.3 137 444-582 178-323 (366)
207 PRK10803 tol-pal system protei 96.7 0.024 5.2E-07 52.7 11.9 95 545-641 145-244 (263)
208 PF13432 TPR_16: Tetratricopep 96.7 0.0085 1.8E-07 42.0 6.8 55 550-606 4-59 (65)
209 COG4235 Cytochrome c biogenesi 96.7 0.079 1.7E-06 48.7 14.4 93 511-605 155-254 (287)
210 PRK10866 outer membrane biogen 96.6 0.22 4.7E-06 46.0 17.3 55 619-673 180-239 (243)
211 KOG1130 Predicted G-alpha GTPa 96.6 0.017 3.6E-07 54.8 9.9 128 513-640 196-341 (639)
212 KOG0550 Molecular chaperone (D 96.6 0.046 9.9E-07 52.1 12.6 155 520-677 177-352 (486)
213 PF12688 TPR_5: Tetratrico pep 96.5 0.071 1.5E-06 42.5 11.1 57 450-506 8-67 (120)
214 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.14 3.1E-06 50.3 14.9 65 540-606 72-140 (453)
215 PRK15331 chaperone protein Sic 96.3 0.11 2.3E-06 43.4 11.6 97 549-649 43-140 (165)
216 PF03704 BTAD: Bacterial trans 96.3 0.042 9E-07 46.4 9.9 71 545-617 64-139 (146)
217 COG3898 Uncharacterized membra 96.3 1.2 2.5E-05 42.7 28.9 295 344-649 85-398 (531)
218 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.026 5.6E-07 55.3 9.1 69 37-105 70-140 (453)
219 PRK15331 chaperone protein Sic 96.2 0.03 6.6E-07 46.6 8.1 96 581-679 40-137 (165)
220 PF07079 DUF1347: Protein of u 96.2 1.4 3E-05 43.2 39.9 137 52-190 16-179 (549)
221 KOG0543 FKBP-type peptidyl-pro 96.2 0.031 6.7E-07 53.4 8.9 127 549-677 214-357 (397)
222 PF13424 TPR_12: Tetratricopep 96.1 0.013 2.8E-07 43.0 5.1 61 579-639 6-71 (78)
223 PF12921 ATP13: Mitochondrial 96.1 0.096 2.1E-06 42.2 10.3 51 573-623 47-97 (126)
224 PF13371 TPR_9: Tetratricopept 96.0 0.035 7.6E-07 40.0 7.0 54 551-606 3-57 (73)
225 KOG3941 Intermediate in Toll s 96.0 0.042 9.1E-07 49.4 8.4 111 95-205 52-186 (406)
226 PF13281 DUF4071: Domain of un 96.0 1.4 3.1E-05 42.9 19.3 27 579-605 306-332 (374)
227 COG1729 Uncharacterized protei 96.0 0.052 1.1E-06 49.2 9.0 84 555-640 153-241 (262)
228 PF13424 TPR_12: Tetratricopep 95.9 0.02 4.3E-07 42.0 5.5 60 616-675 7-75 (78)
229 PF04184 ST7: ST7 protein; In 95.9 0.77 1.7E-05 45.6 16.9 57 547-604 263-321 (539)
230 PF13525 YfiO: Outer membrane 95.9 0.2 4.3E-06 45.0 12.5 46 620-665 147-197 (203)
231 PF07719 TPR_2: Tetratricopept 95.8 0.019 4E-07 33.8 3.9 33 647-679 2-34 (34)
232 COG2976 Uncharacterized protei 95.7 0.68 1.5E-05 39.8 14.0 131 545-680 56-193 (207)
233 PF13512 TPR_18: Tetratricopep 95.6 0.088 1.9E-06 42.8 8.0 58 623-680 19-81 (142)
234 PF00515 TPR_1: Tetratricopept 95.5 0.018 4E-07 33.8 3.2 33 647-679 2-34 (34)
235 PRK11906 transcriptional regul 95.5 0.55 1.2E-05 46.5 14.6 108 559-672 320-433 (458)
236 KOG1586 Protein required for f 95.2 1.3 2.8E-05 39.3 14.1 20 660-679 209-228 (288)
237 PF02259 FAT: FAT domain; Int 95.2 3.8 8.2E-05 40.7 20.9 66 541-606 144-212 (352)
238 PF03704 BTAD: Bacterial trans 95.1 0.18 3.9E-06 42.5 9.3 71 446-516 65-140 (146)
239 KOG2610 Uncharacterized conser 95.1 2.1 4.6E-05 40.1 16.1 150 456-605 116-274 (491)
240 COG1729 Uncharacterized protei 95.0 0.28 6.2E-06 44.6 10.3 105 579-684 143-253 (262)
241 KOG1941 Acetylcholine receptor 95.0 0.47 1E-05 44.7 11.7 127 548-674 127-274 (518)
242 COG0457 NrfG FOG: TPR repeat [ 95.0 2.9 6.3E-05 38.5 22.9 160 515-678 98-268 (291)
243 PF10300 DUF3808: Protein of u 95.0 1.4 3.1E-05 45.3 16.7 159 481-641 192-374 (468)
244 PF13512 TPR_18: Tetratricopep 94.9 1.7 3.7E-05 35.6 13.7 115 549-680 16-133 (142)
245 PF09205 DUF1955: Domain of un 94.9 0.8 1.7E-05 36.4 11.0 57 549-606 92-148 (161)
246 KOG0543 FKBP-type peptidyl-pro 94.8 0.35 7.6E-06 46.5 10.8 119 518-641 214-353 (397)
247 smart00299 CLH Clathrin heavy 94.8 1 2.2E-05 37.6 12.7 41 549-590 13-53 (140)
248 PF04053 Coatomer_WDAD: Coatom 94.7 1.4 3E-05 44.7 15.5 133 479-641 297-429 (443)
249 COG4105 ComL DNA uptake lipopr 94.7 1.1 2.4E-05 40.5 13.1 168 510-680 33-238 (254)
250 PF13431 TPR_17: Tetratricopep 94.7 0.0087 1.9E-07 35.1 0.1 23 669-691 2-24 (34)
251 PRK11906 transcriptional regul 94.7 2.1 4.5E-05 42.6 15.9 105 528-638 320-431 (458)
252 smart00299 CLH Clathrin heavy 94.7 1.7 3.7E-05 36.1 13.9 67 578-657 69-136 (140)
253 KOG3941 Intermediate in Toll s 94.5 0.29 6.4E-06 44.3 9.0 99 198-296 54-175 (406)
254 KOG2114 Vacuolar assembly/sort 94.4 8.6 0.00019 41.1 23.0 53 516-568 709-761 (933)
255 PF10300 DUF3808: Protein of u 94.2 3.4 7.4E-05 42.6 17.4 112 491-605 247-374 (468)
256 KOG1585 Protein required for f 94.1 4.1 8.9E-05 36.5 15.1 85 516-601 154-250 (308)
257 KOG4555 TPR repeat-containing 94.1 0.93 2E-05 35.9 9.7 89 550-640 50-141 (175)
258 PF12921 ATP13: Mitochondrial 94.1 0.73 1.6E-05 37.2 9.8 48 474-521 49-97 (126)
259 PF09205 DUF1955: Domain of un 94.1 2.5 5.4E-05 33.7 13.8 137 352-509 13-152 (161)
260 PF04053 Coatomer_WDAD: Coatom 93.9 2.4 5.2E-05 43.0 15.2 126 246-396 297-422 (443)
261 COG4105 ComL DNA uptake lipopr 93.8 5.2 0.00011 36.4 22.4 179 452-647 43-238 (254)
262 COG3118 Thioredoxin domain-con 93.8 4.4 9.6E-05 37.6 14.9 53 577-629 235-287 (304)
263 KOG1941 Acetylcholine receptor 93.6 1.8 4E-05 41.0 12.4 126 480-605 125-273 (518)
264 KOG4555 TPR repeat-containing 93.5 0.34 7.5E-06 38.2 6.5 90 586-677 51-146 (175)
265 PF09613 HrpB1_HrpK: Bacterial 93.5 2.3 4.9E-05 35.6 11.7 108 552-668 19-131 (160)
266 KOG2114 Vacuolar assembly/sort 93.5 11 0.00025 40.3 19.0 81 453-539 378-458 (933)
267 PF13181 TPR_8: Tetratricopept 93.5 0.1 2.3E-06 30.5 3.0 31 648-678 3-33 (34)
268 KOG1920 IkappaB kinase complex 93.3 8.5 0.00018 42.9 18.5 101 524-641 951-1053(1265)
269 PRK12798 chemotaxis protein; R 93.3 9.1 0.0002 37.6 20.1 163 525-690 125-300 (421)
270 KOG4648 Uncharacterized conser 93.2 0.17 3.7E-06 47.0 5.3 51 551-603 105-156 (536)
271 KOG1585 Protein required for f 93.2 6.2 0.00013 35.4 14.3 114 556-670 123-251 (308)
272 PRK09687 putative lyase; Provi 93.0 8.3 0.00018 36.6 25.3 45 413-458 39-83 (280)
273 KOG2066 Vacuolar assembly/sort 92.9 15 0.00033 39.1 25.5 100 286-388 363-467 (846)
274 COG4649 Uncharacterized protei 92.8 5.3 0.00011 33.7 14.0 119 553-674 68-195 (221)
275 COG3629 DnrI DNA-binding trans 92.8 1.2 2.6E-05 41.4 10.1 78 544-623 154-236 (280)
276 PF13428 TPR_14: Tetratricopep 92.7 0.26 5.7E-06 31.0 4.2 26 581-606 4-29 (44)
277 PF09613 HrpB1_HrpK: Bacterial 92.7 3 6.5E-05 34.9 11.2 96 585-685 17-115 (160)
278 COG1747 Uncharacterized N-term 92.4 13 0.00029 37.3 18.2 178 474-658 63-251 (711)
279 KOG1550 Extracellular protein 92.3 18 0.00038 38.5 20.6 67 443-509 288-360 (552)
280 PF13176 TPR_7: Tetratricopept 92.1 0.19 4.1E-06 29.9 2.8 27 649-675 2-28 (36)
281 KOG1258 mRNA processing protei 92.1 16 0.00035 37.6 30.1 185 442-628 296-489 (577)
282 KOG1258 mRNA processing protei 91.5 19 0.00041 37.2 28.6 179 476-660 296-489 (577)
283 PF07035 Mic1: Colon cancer-as 91.3 6.8 0.00015 33.4 12.1 135 128-272 14-148 (167)
284 KOG4234 TPR repeat-containing 91.1 1.7 3.8E-05 37.4 8.3 88 550-641 102-195 (271)
285 PF08631 SPO22: Meiosis protei 91.0 14 0.00031 35.0 25.5 17 353-369 5-21 (278)
286 KOG2610 Uncharacterized conser 90.9 15 0.00032 34.8 15.6 144 525-671 116-272 (491)
287 PF00637 Clathrin: Region in C 90.8 1.1 2.4E-05 37.4 7.4 85 250-337 13-97 (143)
288 COG3118 Thioredoxin domain-con 90.8 14 0.00031 34.4 17.8 58 613-670 235-296 (304)
289 PF07035 Mic1: Colon cancer-as 90.6 9.8 0.00021 32.4 13.0 57 344-404 92-148 (167)
290 COG2976 Uncharacterized protei 90.6 11 0.00023 32.8 13.6 89 549-643 95-188 (207)
291 PF10602 RPN7: 26S proteasome 90.4 3.9 8.4E-05 35.6 10.4 96 545-641 38-140 (177)
292 KOG1920 IkappaB kinase complex 90.3 36 0.00078 38.4 20.4 76 287-367 916-991 (1265)
293 PF13170 DUF4003: Protein of u 90.3 14 0.00031 35.2 14.8 133 357-519 78-224 (297)
294 COG0457 NrfG FOG: TPR repeat [ 90.1 15 0.00031 33.6 26.8 94 412-505 60-158 (291)
295 PF14853 Fis1_TPR_C: Fis1 C-te 90.1 0.32 6.8E-06 31.9 2.6 35 651-685 6-40 (53)
296 PF00515 TPR_1: Tetratricopept 89.9 0.8 1.7E-05 26.6 4.1 27 545-571 3-29 (34)
297 KOG0890 Protein kinase of the 89.7 59 0.0013 40.0 30.5 110 579-692 1671-1801(2382)
298 PF13174 TPR_6: Tetratricopept 89.4 0.5 1.1E-05 27.2 2.9 29 651-679 5-33 (33)
299 PF13176 TPR_7: Tetratricopept 89.1 0.98 2.1E-05 26.8 4.0 22 547-568 3-24 (36)
300 PF10602 RPN7: 26S proteasome 89.1 5.1 0.00011 34.9 10.0 94 110-205 38-140 (177)
301 PF13170 DUF4003: Protein of u 89.0 22 0.00047 34.0 17.4 134 392-585 78-224 (297)
302 COG3629 DnrI DNA-binding trans 89.0 3.3 7.2E-05 38.6 9.2 76 512-587 153-236 (280)
303 PF13431 TPR_17: Tetratricopep 88.5 0.47 1E-05 27.7 2.3 19 579-597 14-32 (34)
304 KOG2062 26S proteasome regulat 88.4 38 0.00082 36.0 24.1 26 313-338 213-238 (929)
305 PF02284 COX5A: Cytochrome c o 88.3 4.2 9.2E-05 30.8 7.5 60 561-622 28-87 (108)
306 cd00923 Cyt_c_Oxidase_Va Cytoc 88.2 3.5 7.7E-05 30.8 7.0 59 561-621 25-83 (103)
307 PF04184 ST7: ST7 protein; In 88.0 33 0.00071 34.8 17.5 58 514-571 261-323 (539)
308 TIGR02561 HrpB1_HrpK type III 88.0 14 0.0003 30.5 11.7 51 554-606 21-72 (153)
309 PF07719 TPR_2: Tetratricopept 87.8 1.3 2.9E-05 25.5 4.1 26 546-571 4-29 (34)
310 COG2909 MalT ATP-dependent tra 87.4 49 0.0011 36.2 23.2 48 524-571 470-525 (894)
311 PRK09687 putative lyase; Provi 87.3 27 0.00059 33.1 24.9 117 177-295 36-158 (280)
312 COG5107 RNA14 Pre-mRNA 3'-end 87.3 33 0.00072 34.1 34.2 142 443-588 397-545 (660)
313 PF02259 FAT: FAT domain; Int 86.9 34 0.00073 33.9 16.1 27 579-605 147-173 (352)
314 KOG2066 Vacuolar assembly/sort 86.7 49 0.0011 35.5 23.6 170 115-310 363-536 (846)
315 COG4649 Uncharacterized protei 86.5 19 0.00042 30.6 15.2 54 453-506 68-123 (221)
316 KOG4279 Serine/threonine prote 86.0 30 0.00066 36.7 14.5 101 553-678 297-398 (1226)
317 PF13374 TPR_10: Tetratricopep 85.9 1.3 2.9E-05 27.1 3.6 27 648-674 4-30 (42)
318 PF00637 Clathrin: Region in C 85.9 0.77 1.7E-05 38.4 3.2 86 47-135 12-97 (143)
319 TIGR02561 HrpB1_HrpK type III 85.8 19 0.00041 29.8 11.8 48 525-572 23-73 (153)
320 PF02284 COX5A: Cytochrome c o 85.7 4.7 0.0001 30.5 6.6 58 27-85 30-87 (108)
321 smart00028 TPR Tetratricopepti 85.7 1.2 2.7E-05 24.8 3.2 31 648-678 3-33 (34)
322 PRK15180 Vi polysaccharide bio 85.2 6.3 0.00014 39.0 9.0 128 551-682 297-427 (831)
323 KOG2062 26S proteasome regulat 85.1 57 0.0012 34.8 29.7 26 181-206 213-238 (929)
324 KOG4570 Uncharacterized conser 85.0 15 0.00032 34.5 10.7 102 71-173 58-165 (418)
325 COG1747 Uncharacterized N-term 84.9 48 0.001 33.7 21.6 175 442-624 65-249 (711)
326 PRK11619 lytic murein transgly 84.2 67 0.0015 34.9 31.0 114 557-673 255-373 (644)
327 PF11207 DUF2989: Protein of u 83.8 10 0.00022 33.2 8.8 75 559-634 122-198 (203)
328 PF04190 DUF410: Protein of un 83.6 39 0.00085 31.7 15.7 159 190-370 2-170 (260)
329 PF07721 TPR_4: Tetratricopept 82.8 2.6 5.6E-05 22.7 3.3 21 618-638 5-25 (26)
330 TIGR02508 type_III_yscG type I 82.5 18 0.00039 27.4 8.3 86 158-247 20-105 (115)
331 PF13181 TPR_8: Tetratricopept 82.3 2.2 4.8E-05 24.6 3.2 27 545-571 3-29 (34)
332 cd00923 Cyt_c_Oxidase_Va Cytoc 82.3 6.7 0.00015 29.4 6.1 42 28-69 28-69 (103)
333 KOG4570 Uncharacterized conser 81.4 23 0.0005 33.3 10.5 103 171-274 57-165 (418)
334 PF08631 SPO22: Meiosis protei 81.1 51 0.0011 31.3 24.4 158 513-673 85-273 (278)
335 PRK10941 hypothetical protein; 81.1 6.3 0.00014 36.9 7.2 64 620-683 187-252 (269)
336 PRK11619 lytic murein transgly 79.3 1E+02 0.0022 33.6 34.3 320 217-571 41-374 (644)
337 KOG1464 COP9 signalosome, subu 79.3 52 0.0011 30.2 16.8 59 545-604 193-257 (440)
338 KOG1464 COP9 signalosome, subu 78.8 53 0.0012 30.2 13.5 94 547-640 149-258 (440)
339 PF13374 TPR_10: Tetratricopep 78.6 5.5 0.00012 24.2 4.3 26 545-570 4-29 (42)
340 KOG4648 Uncharacterized conser 78.4 5.8 0.00012 37.4 5.9 110 520-640 105-221 (536)
341 PF11207 DUF2989: Protein of u 78.4 16 0.00034 32.1 8.2 72 460-532 123-198 (203)
342 PF10579 Rapsyn_N: Rapsyn N-te 78.1 5.6 0.00012 28.5 4.4 47 590-636 18-65 (80)
343 PF04910 Tcf25: Transcriptiona 77.5 79 0.0017 31.4 16.1 92 585-677 110-224 (360)
344 PF06552 TOM20_plant: Plant sp 77.1 18 0.00038 31.1 7.8 62 559-625 51-124 (186)
345 PF13762 MNE1: Mitochondrial s 77.0 22 0.00047 29.4 8.2 88 71-158 31-130 (145)
346 TIGR03504 FimV_Cterm FimV C-te 76.9 3.1 6.8E-05 26.0 2.6 26 620-645 5-30 (44)
347 KOG3364 Membrane protein invol 76.5 17 0.00037 29.4 7.1 31 652-682 77-107 (149)
348 KOG3807 Predicted membrane pro 76.2 35 0.00076 32.3 10.1 117 548-687 280-403 (556)
349 KOG4234 TPR repeat-containing 76.0 27 0.00058 30.5 8.6 61 544-606 135-196 (271)
350 cd08819 CARD_MDA5_2 Caspase ac 75.5 14 0.0003 27.2 5.9 67 60-128 20-86 (88)
351 PF07163 Pex26: Pex26 protein; 75.0 37 0.0008 31.5 9.7 87 450-536 90-182 (309)
352 PF13174 TPR_6: Tetratricopept 73.4 8.1 0.00018 21.8 3.8 24 583-606 5-28 (33)
353 PF13762 MNE1: Mitochondrial s 73.4 52 0.0011 27.3 9.7 50 208-257 78-128 (145)
354 PRK13342 recombination factor 73.3 50 0.0011 33.6 11.8 44 110-153 229-275 (413)
355 COG4976 Predicted methyltransf 73.3 4.8 0.0001 35.7 3.8 58 623-680 4-63 (287)
356 COG4455 ImpE Protein of avirul 73.0 23 0.00051 31.4 7.7 55 451-505 9-63 (273)
357 PF11846 DUF3366: Domain of un 71.3 15 0.00034 32.5 6.8 52 590-641 120-171 (193)
358 KOG0545 Aryl-hydrocarbon recep 71.2 30 0.00065 31.3 8.1 59 619-677 235-295 (329)
359 PF04097 Nic96: Nup93/Nic96; 70.7 1.6E+02 0.0035 31.9 24.6 38 348-387 265-302 (613)
360 PF09670 Cas_Cas02710: CRISPR- 70.7 66 0.0014 32.3 11.6 54 552-606 140-197 (379)
361 KOG3824 Huntingtin interacting 70.5 5.1 0.00011 37.1 3.5 61 625-685 127-189 (472)
362 PF07163 Pex26: Pex26 protein; 70.2 50 0.0011 30.7 9.4 87 348-434 90-181 (309)
363 PF09477 Type_III_YscG: Bacter 69.9 42 0.0009 25.9 7.4 81 156-239 19-99 (116)
364 KOG4507 Uncharacterized conser 69.2 9.7 0.00021 38.9 5.3 101 587-688 616-718 (886)
365 COG4455 ImpE Protein of avirul 68.8 87 0.0019 28.0 12.5 126 547-681 5-140 (273)
366 TIGR03504 FimV_Cterm FimV C-te 68.5 12 0.00026 23.4 3.8 23 549-571 5-27 (44)
367 PF10579 Rapsyn_N: Rapsyn N-te 68.0 16 0.00035 26.3 4.7 47 555-601 18-66 (80)
368 PHA02875 ankyrin repeat protei 67.9 1.4E+02 0.003 30.4 13.9 143 53-205 10-159 (413)
369 KOG0276 Vesicle coat complex C 67.7 93 0.002 32.5 11.6 46 321-368 648-693 (794)
370 TIGR02508 type_III_yscG type I 67.5 53 0.0011 25.0 8.0 85 58-146 21-105 (115)
371 KOG2063 Vacuolar assembly/sort 67.4 1.7E+02 0.0038 32.7 14.5 28 342-369 505-532 (877)
372 KOG0276 Vesicle coat complex C 67.4 55 0.0012 34.0 10.0 98 89-203 649-746 (794)
373 COG4785 NlpI Lipoprotein NlpI, 67.1 94 0.002 27.8 15.9 30 477-506 99-128 (297)
374 KOG1550 Extracellular protein 66.8 1.8E+02 0.004 31.0 23.5 95 413-507 290-394 (552)
375 PF06552 TOM20_plant: Plant sp 66.6 15 0.00033 31.5 5.2 66 559-626 7-81 (186)
376 PF04910 Tcf25: Transcriptiona 66.3 72 0.0016 31.7 10.8 28 578-605 40-67 (360)
377 cd00280 TRFH Telomeric Repeat 65.7 36 0.00079 29.3 7.2 19 623-641 120-138 (200)
378 PF08311 Mad3_BUB1_I: Mad3/BUB 65.6 72 0.0016 25.9 9.8 41 632-672 81-125 (126)
379 KOG2659 LisH motif-containing 65.3 70 0.0015 28.8 9.2 21 550-570 71-91 (228)
380 COG3947 Response regulator con 65.2 1.2E+02 0.0027 28.5 13.5 58 617-674 282-341 (361)
381 KOG4077 Cytochrome c oxidase, 64.2 51 0.0011 26.3 7.2 57 563-621 69-125 (149)
382 PRK13800 putative oxidoreducta 64.2 2.7E+02 0.0059 32.0 24.0 154 510-674 726-880 (897)
383 PF14853 Fis1_TPR_C: Fis1 C-te 64.0 23 0.0005 23.3 4.7 34 549-584 7-40 (53)
384 COG3947 Response regulator con 63.9 37 0.00081 31.7 7.4 50 520-569 287-339 (361)
385 cd08819 CARD_MDA5_2 Caspase ac 63.5 49 0.0011 24.5 6.6 64 497-562 22-85 (88)
386 smart00386 HAT HAT (Half-A-TPR 63.3 6.8 0.00015 22.0 2.0 28 660-687 1-28 (33)
387 KOG4077 Cytochrome c oxidase, 62.8 36 0.00079 27.1 6.2 81 35-116 41-126 (149)
388 PRK10941 hypothetical protein; 62.6 89 0.0019 29.4 10.1 74 546-621 184-258 (269)
389 KOG4642 Chaperone-dependent E3 61.7 92 0.002 28.4 9.2 118 522-641 20-144 (284)
390 PF07720 TPR_3: Tetratricopept 61.2 22 0.00047 21.1 3.8 31 649-679 4-36 (36)
391 KOG0376 Serine-threonine phosp 61.0 24 0.00051 35.4 6.2 104 551-659 12-118 (476)
392 PF09986 DUF2225: Uncharacteri 58.7 1.3E+02 0.0029 27.2 10.2 62 579-641 119-192 (214)
393 PF13929 mRNA_stabil: mRNA sta 58.4 1.7E+02 0.0036 27.7 13.9 60 139-198 198-258 (292)
394 COG4785 NlpI Lipoprotein NlpI, 58.0 1.4E+02 0.0031 26.7 16.6 178 423-606 77-265 (297)
395 KOG2034 Vacuolar sorting prote 57.5 3.1E+02 0.0067 30.5 25.3 174 285-469 364-556 (911)
396 KOG0991 Replication factor C, 56.6 1.6E+02 0.0034 26.8 9.9 37 540-577 236-272 (333)
397 PF10366 Vps39_1: Vacuolar sor 56.5 76 0.0017 24.8 7.3 28 342-369 40-67 (108)
398 PF10345 Cohesin_load: Cohesin 56.5 3E+02 0.0064 30.0 36.1 112 60-172 39-168 (608)
399 COG5159 RPN6 26S proteasome re 56.4 1.8E+02 0.0038 27.3 15.1 33 215-247 9-41 (421)
400 PF11848 DUF3368: Domain of un 55.7 40 0.00086 21.6 4.7 33 119-151 13-45 (48)
401 KOG2471 TPR repeat-containing 54.6 2.5E+02 0.0055 28.7 15.0 107 552-658 249-381 (696)
402 KOG0890 Protein kinase of the 54.5 5.5E+02 0.012 32.5 33.7 161 47-215 1388-1552(2382)
403 COG2909 MalT ATP-dependent tra 53.8 3.6E+02 0.0077 30.1 28.0 24 583-606 623-646 (894)
404 KOG4642 Chaperone-dependent E3 53.4 1.5E+02 0.0033 27.0 9.2 119 485-605 18-144 (284)
405 PF04034 DUF367: Domain of unk 53.2 69 0.0015 25.7 6.4 59 615-673 67-126 (127)
406 PHA03100 ankyrin repeat protei 51.7 3E+02 0.0066 28.7 13.9 148 48-205 38-200 (480)
407 PF11846 DUF3366: Domain of un 51.5 42 0.00091 29.7 6.0 37 642-678 140-176 (193)
408 cd00280 TRFH Telomeric Repeat 51.4 28 0.00061 30.0 4.3 30 652-682 117-146 (200)
409 PRK15180 Vi polysaccharide bio 51.4 2.8E+02 0.0061 28.2 12.1 50 422-471 334-385 (831)
410 PF08311 Mad3_BUB1_I: Mad3/BUB 51.3 1.3E+02 0.0028 24.4 9.1 43 561-603 81-124 (126)
411 KOG4567 GTPase-activating prot 50.9 2.3E+02 0.0049 27.0 10.4 88 563-657 263-360 (370)
412 PF11817 Foie-gras_1: Foie gra 50.8 52 0.0011 30.6 6.6 53 584-636 184-240 (247)
413 KOG2422 Uncharacterized conser 50.3 3.3E+02 0.0071 28.6 13.6 91 549-641 348-446 (665)
414 COG4941 Predicted RNA polymera 49.6 2.4E+02 0.0053 27.2 10.3 118 559-681 272-400 (415)
415 PF08424 NRDE-2: NRDE-2, neces 49.4 2.6E+02 0.0057 27.3 14.3 113 560-676 48-184 (321)
416 PHA02875 ankyrin repeat protei 49.4 3E+02 0.0065 28.0 17.5 78 119-204 10-91 (413)
417 KOG2908 26S proteasome regulat 49.1 1.6E+02 0.0034 28.4 9.1 57 540-596 110-175 (380)
418 PF11663 Toxin_YhaV: Toxin wit 48.3 22 0.00048 28.7 3.1 34 118-153 105-138 (140)
419 PF14689 SPOB_a: Sensor_kinase 47.8 42 0.0009 23.0 4.1 28 579-606 24-51 (62)
420 KOG0403 Neoplastic transformat 47.7 3.1E+02 0.0068 27.7 18.8 340 4-356 176-589 (645)
421 PF02184 HAT: HAT (Half-A-TPR) 47.6 25 0.00054 20.2 2.4 26 661-687 2-27 (32)
422 PF04097 Nic96: Nup93/Nic96; 47.1 4.1E+02 0.0089 28.9 26.4 28 342-369 325-355 (613)
423 PRK14962 DNA polymerase III su 47.0 3.6E+02 0.0077 28.1 15.3 25 120-144 255-279 (472)
424 PF12862 Apc5: Anaphase-promot 47.0 1.2E+02 0.0027 22.8 7.7 53 554-606 9-69 (94)
425 PF09477 Type_III_YscG: Bacter 46.8 1.4E+02 0.003 23.3 9.6 87 392-482 22-108 (116)
426 KOG4507 Uncharacterized conser 45.7 62 0.0013 33.5 6.4 120 68-189 598-721 (886)
427 COG0790 FOG: TPR repeat, SEL1 44.9 2.9E+02 0.0062 26.4 18.3 183 491-678 55-269 (292)
428 KOG2471 TPR repeat-containing 44.7 3.7E+02 0.008 27.6 13.9 101 453-554 250-380 (696)
429 KOG0376 Serine-threonine phosp 44.4 22 0.00047 35.7 3.1 95 586-683 12-109 (476)
430 PF11848 DUF3368: Domain of un 44.1 85 0.0018 20.1 5.1 33 220-252 13-45 (48)
431 PF13934 ELYS: Nuclear pore co 44.0 2.6E+02 0.0055 25.6 12.7 20 549-568 114-133 (226)
432 KOG1586 Protein required for f 43.6 2.6E+02 0.0056 25.6 19.6 16 556-571 167-182 (288)
433 PRK13800 putative oxidoreducta 43.4 5.7E+02 0.012 29.5 26.4 252 373-647 632-885 (897)
434 PF15469 Sec5: Exocyst complex 43.3 2.3E+02 0.0049 24.8 11.9 53 548-606 62-114 (182)
435 KOG3677 RNA polymerase I-assoc 43.0 1.6E+02 0.0034 29.3 8.3 55 449-504 241-299 (525)
436 PF11768 DUF3312: Protein of u 42.9 2.6E+02 0.0057 29.2 10.3 45 619-666 499-543 (545)
437 PF10255 Paf67: RNA polymerase 41.9 1.7E+02 0.0038 29.4 8.8 57 312-368 124-191 (404)
438 PF11663 Toxin_YhaV: Toxin wit 41.6 33 0.00072 27.8 3.1 34 553-588 105-138 (140)
439 KOG3364 Membrane protein invol 41.4 2E+02 0.0043 23.6 8.5 65 576-640 30-97 (149)
440 PF09670 Cas_Cas02710: CRISPR- 41.4 2.8E+02 0.006 27.9 10.4 19 453-471 141-159 (379)
441 PF14689 SPOB_a: Sensor_kinase 41.0 43 0.00094 22.9 3.3 27 545-571 25-51 (62)
442 KOG2422 Uncharacterized conser 40.8 2.3E+02 0.0051 29.6 9.4 99 38-136 335-447 (665)
443 PRK10564 maltose regulon perip 40.7 46 0.00099 31.5 4.4 37 111-147 260-296 (303)
444 PRK14956 DNA polymerase III su 39.7 3.2E+02 0.007 28.4 10.5 98 60-179 184-284 (484)
445 PHA02537 M terminase endonucle 39.7 1.8E+02 0.0038 26.6 7.8 107 553-679 93-211 (230)
446 PRK10564 maltose regulon perip 39.5 55 0.0012 30.9 4.7 37 212-248 260-296 (303)
447 KOG0686 COP9 signalosome, subu 39.4 4.1E+02 0.0088 26.6 13.1 57 515-571 153-215 (466)
448 PRK02287 hypothetical protein; 37.8 1.5E+02 0.0033 25.4 6.6 59 616-674 109-168 (171)
449 PF12862 Apc5: Anaphase-promot 36.4 1.9E+02 0.004 21.8 7.0 54 588-641 8-68 (94)
450 PF11817 Foie-gras_1: Foie gra 35.5 3.1E+02 0.0066 25.5 9.2 52 448-499 183-240 (247)
451 PF11838 ERAP1_C: ERAP1-like C 34.7 4.4E+02 0.0094 25.6 15.1 186 84-269 45-262 (324)
452 COG0735 Fur Fe2+/Zn2+ uptake r 34.5 2.7E+02 0.0059 23.2 8.2 65 231-296 8-72 (145)
453 PRK09462 fur ferric uptake reg 34.0 2.8E+02 0.0061 23.2 8.2 62 234-296 7-69 (148)
454 PF11768 DUF3312: Protein of u 33.7 2.5E+02 0.0054 29.3 8.5 59 447-505 412-472 (545)
455 KOG3154 Uncharacterized conser 33.4 1.4E+02 0.0031 26.4 5.9 53 580-635 149-201 (263)
456 KOG3824 Huntingtin interacting 32.6 35 0.00076 32.0 2.3 33 656-688 126-158 (472)
457 PF10366 Vps39_1: Vacuolar sor 32.1 2.5E+02 0.0054 22.0 7.9 26 546-571 42-67 (108)
458 PF14863 Alkyl_sulf_dimr: Alky 31.3 1.2E+02 0.0026 25.1 5.0 57 631-690 58-114 (141)
459 KOG2396 HAT (Half-A-TPR) repea 31.0 6.2E+02 0.013 26.3 28.2 437 27-537 90-555 (568)
460 cd08326 CARD_CASP9 Caspase act 30.9 1.6E+02 0.0034 21.8 5.1 63 61-127 18-80 (84)
461 KOG4567 GTPase-activating prot 30.9 4.9E+02 0.011 25.0 10.1 77 463-544 263-350 (370)
462 PF08424 NRDE-2: NRDE-2, neces 30.8 5.2E+02 0.011 25.3 15.4 100 540-641 62-181 (321)
463 COG0735 Fur Fe2+/Zn2+ uptake r 30.8 2.3E+02 0.0049 23.7 6.7 48 211-258 22-69 (145)
464 PF06957 COPI_C: Coatomer (COP 30.5 1.6E+02 0.0035 29.8 6.6 19 553-571 214-232 (422)
465 PF10516 SHNi-TPR: SHNi-TPR; 30.4 90 0.002 18.9 3.1 28 648-675 3-30 (38)
466 cd07153 Fur_like Ferric uptake 30.2 80 0.0017 25.0 3.9 48 47-94 5-52 (116)
467 KOG2581 26S proteasome regulat 30.0 5.8E+02 0.013 25.6 12.0 93 586-678 177-279 (493)
468 PRK06645 DNA polymerase III su 29.9 4E+02 0.0088 28.0 9.7 21 121-141 270-290 (507)
469 COG5108 RPO41 Mitochondrial DN 29.4 3E+02 0.0065 29.4 8.3 100 183-285 33-144 (1117)
470 PF10475 DUF2450: Protein of u 28.9 5.3E+02 0.011 24.7 10.3 117 518-638 104-221 (291)
471 PF04190 DUF410: Protein of un 28.8 5E+02 0.011 24.4 19.0 81 511-607 89-170 (260)
472 PF04124 Dor1: Dor1-like famil 28.6 2.9E+02 0.0063 27.2 8.2 39 546-584 109-148 (338)
473 cd08326 CARD_CASP9 Caspase act 28.4 87 0.0019 23.2 3.4 26 328-353 48-73 (84)
474 PF10255 Paf67: RNA polymerase 28.1 5.5E+02 0.012 26.0 9.8 95 541-641 73-191 (404)
475 TIGR01503 MthylAspMut_E methyl 28.1 3.4E+02 0.0075 27.7 8.2 22 230-251 197-218 (480)
476 PF03745 DUF309: Domain of unk 27.9 1.9E+02 0.0041 19.8 4.7 34 119-152 10-43 (62)
477 PF13929 mRNA_stabil: mRNA sta 27.8 5.4E+02 0.012 24.5 22.6 64 474-537 199-263 (292)
478 PF10475 DUF2450: Protein of u 27.6 4.1E+02 0.009 25.5 8.8 28 408-435 194-221 (291)
479 KOG2297 Predicted translation 27.0 5.7E+02 0.012 24.5 12.7 16 545-560 323-338 (412)
480 PF02847 MA3: MA3 domain; Int 26.9 1.7E+02 0.0038 22.8 5.3 22 316-337 8-29 (113)
481 PF10345 Cohesin_load: Cohesin 26.9 8.5E+02 0.018 26.5 40.9 49 222-270 152-205 (608)
482 KOG0545 Aryl-hydrocarbon recep 26.8 5.1E+02 0.011 23.9 8.8 58 449-506 236-293 (329)
483 PLN03192 Voltage-dependent pot 26.8 5.4E+02 0.012 29.4 10.9 18 289-306 662-679 (823)
484 PF04781 DUF627: Protein of un 26.7 3.2E+02 0.0069 21.5 7.2 21 551-571 4-24 (111)
485 PF07575 Nucleopor_Nup85: Nup8 26.6 4.4E+02 0.0095 28.3 9.7 256 6-289 262-540 (566)
486 PRK11639 zinc uptake transcrip 26.5 2.3E+02 0.005 24.4 6.3 60 236-296 18-77 (169)
487 KOG2063 Vacuolar assembly/sort 26.1 1E+03 0.022 27.1 19.2 27 110-136 506-532 (877)
488 TIGR02710 CRISPR-associated pr 25.9 6.8E+02 0.015 25.1 11.0 54 550-603 137-196 (380)
489 COG2178 Predicted RNA-binding 25.8 4.4E+02 0.0095 23.3 7.4 18 624-641 131-148 (204)
490 cd08812 CARD_RIG-I_like Caspas 25.5 2.1E+02 0.0046 21.4 5.1 42 84-125 41-83 (88)
491 COG4941 Predicted RNA polymera 25.4 6.4E+02 0.014 24.6 9.1 99 540-641 287-392 (415)
492 cd08332 CARD_CASP2 Caspase act 25.3 2E+02 0.0044 21.6 5.0 63 61-127 22-84 (90)
493 smart00777 Mad3_BUB1_I Mad3/BU 25.3 3.7E+02 0.008 21.8 8.2 22 617-638 102-123 (125)
494 PHA03100 ankyrin repeat protei 25.3 7.9E+02 0.017 25.6 15.5 14 190-203 117-130 (480)
495 PF02847 MA3: MA3 domain; Int 25.2 2.3E+02 0.005 22.1 5.7 21 449-469 8-28 (113)
496 cd07153 Fur_like Ferric uptake 25.0 1.9E+02 0.0041 22.8 5.2 44 114-157 6-49 (116)
497 PRK11639 zinc uptake transcrip 24.9 2.7E+02 0.0058 24.0 6.3 15 124-138 41-55 (169)
498 PRK13342 recombination factor 23.8 7.9E+02 0.017 25.1 17.6 45 344-388 230-277 (413)
499 PF09454 Vps23_core: Vps23 cor 23.8 2.1E+02 0.0046 19.9 4.4 50 576-627 6-55 (65)
500 COG2912 Uncharacterized conser 23.4 86 0.0019 29.2 3.2 46 648-693 183-228 (269)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-89 Score=754.22 Aligned_cols=627 Identities=31% Similarity=0.564 Sum_probs=607.9
Q ss_pred hccCCCCCChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccHH
Q 043637 33 HLKSDEPVSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWN 112 (693)
Q Consensus 33 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 112 (693)
+...+.+|+..+|..++.+|.+.+.+..+.+++..+.+.++.++..+++.++..|++.|+++.|+++|++|.+||..+||
T Consensus 77 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n 156 (857)
T PLN03077 77 MQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWN 156 (857)
T ss_pred HHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHH
Confidence 44567889999999999999999999999999999999888889999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCC
Q 043637 113 AMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCM 192 (693)
Q Consensus 113 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 192 (693)
.+|.+|++.|++++|+++|++|.+.|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..++++|+.+|+++|
T Consensus 157 ~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g 236 (857)
T PLN03077 157 VLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG 236 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHH
Q 043637 193 VMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIK 272 (693)
Q Consensus 193 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 272 (693)
++++|.++|++|+++|..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+.+.+.+++..+.+
T Consensus 237 ~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 316 (857)
T PLN03077 237 DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316 (857)
T ss_pred CHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHH
Q 043637 273 IDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYT 352 (693)
Q Consensus 273 ~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 352 (693)
.|+.||..+|+.|+.+|++.|+++ +|.++|++|.+||..+|+.++.+|+
T Consensus 317 ~g~~~d~~~~n~Li~~y~k~g~~~-------------------------------~A~~vf~~m~~~d~~s~n~li~~~~ 365 (857)
T PLN03077 317 TGFAVDVSVCNSLIQMYLSLGSWG-------------------------------EAEKVFSRMETKDAVSWTAMISGYE 365 (857)
T ss_pred hCCccchHHHHHHHHHHHhcCCHH-------------------------------HHHHHHhhCCCCCeeeHHHHHHHHH
Confidence 999999999999999999999999 8888888888899999999999999
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHH
Q 043637 353 RSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARI 432 (693)
Q Consensus 353 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 432 (693)
+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.++++|++.|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred HHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcch
Q 043637 433 WFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINV 512 (693)
Q Consensus 433 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 512 (693)
++.++ .++|..+|+.++.+|++.|+.++|+++|++|.....||..||..++.+|++.|+.+.+.+++..+.+.|+.++.
T Consensus 446 vf~~m-~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~ 524 (857)
T PLN03077 446 VFHNI-PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524 (857)
T ss_pred HHHhC-CCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccc
Confidence 77665 56899999999999999999999999999998645999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC
Q 043637 513 VCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEG 592 (693)
Q Consensus 513 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 592 (693)
.++++|+++|+++|++++|.++|+++ .+|..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHH
Q 043637 593 NVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRL 672 (693)
Q Consensus 593 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 672 (693)
++++|.++|+.|.++.|+.|+..+|+.++.+|++.|++++|.+++++|+..|+...|.+++.+|..+|+.+.|+.+.+++
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99999999999996689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCcchhhhhhcccC
Q 043637 673 NELNPWAPFQFKITTNRFDR 692 (693)
Q Consensus 673 ~~~~p~~~~~~~~l~~~y~~ 692 (693)
++++|++++.|+.|+|+|+.
T Consensus 684 ~~l~p~~~~~y~ll~n~ya~ 703 (857)
T PLN03077 684 FELDPNSVGYYILLCNLYAD 703 (857)
T ss_pred HhhCCCCcchHHHHHHHHHH
Confidence 99999999999999999973
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-75 Score=643.43 Aligned_cols=547 Identities=27% Similarity=0.406 Sum_probs=523.9
Q ss_pred hhccCCCCCChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccH
Q 043637 32 GHLKSDEPVSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSW 111 (693)
Q Consensus 32 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 111 (693)
.+...|+.||..+|+.++++|+..+++..+.+++..+.+.|+.|++.+++.++.+|++.|++++|.++|++|+++|..+|
T Consensus 177 ~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~ 256 (857)
T PLN03077 177 RMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISW 256 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchh
Confidence 34456888888899999999888888888888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcC
Q 043637 112 NAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKC 191 (693)
Q Consensus 112 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 191 (693)
|++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|++|+.+|++.
T Consensus 257 n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 336 (857)
T PLN03077 257 NAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHH
Q 043637 192 MVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVII 271 (693)
Q Consensus 192 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 271 (693)
|++++|.++|++|.+||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.
T Consensus 337 g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~ 416 (857)
T PLN03077 337 GSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE 416 (857)
T ss_pred CCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHH
Q 043637 272 KIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGY 351 (693)
Q Consensus 272 ~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 351 (693)
+.|+.|+..+++.|+++|+++|+++ +|.++|++|.++|..+|+.++.+|
T Consensus 417 ~~g~~~~~~~~n~Li~~y~k~g~~~-------------------------------~A~~vf~~m~~~d~vs~~~mi~~~ 465 (857)
T PLN03077 417 RKGLISYVVVANALIEMYSKCKCID-------------------------------KALEVFHNIPEKDVISWTSIIAGL 465 (857)
T ss_pred HhCCCcchHHHHHHHHHHHHcCCHH-------------------------------HHHHHHHhCCCCCeeeHHHHHHHH
Confidence 9999999999999999999999999 888888888889999999999999
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHH
Q 043637 352 TRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSAR 431 (693)
Q Consensus 352 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 431 (693)
++.|+.++|+.+|++|.. +++||..||+.++.+|++.|.++.+.+++..+.+.|+.++..++++++++|+++|++++|.
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 999999999999999986 6999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCHHHHHHHHHHhcccCChHHHHHHHHHHH-HhCCC
Q 043637 432 IWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWET-RPSKFTFETLLAACANISSLEQGKQIHCFVI-RNCYE 509 (693)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~ 509 (693)
+.+.++ .+|..+||++|.+|++.|+.++|+++|++|...| .||..||+.++.+|++.|.+++|.++|+.|. +.|+.
T Consensus 545 ~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~ 622 (857)
T PLN03077 545 NQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622 (857)
T ss_pred HHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence 888887 8899999999999999999999999999999999 9999999999999999999999999999999 58999
Q ss_pred cchhHHHHHHHHHHhhCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHH
Q 043637 510 INVVCRGALVEVYTKCCCLEYAIRVFKESS-SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLA 587 (693)
Q Consensus 510 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~ 587 (693)
|+..+|+.++++|++.|++++|.+++++|. +||..+|++|+.+|...|+.+.+....+++.+ +.|+. ..|..+.+.
T Consensus 623 P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ 700 (857)
T PLN03077 623 PNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNL 700 (857)
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHH
Confidence 999999999999999999999999999997 99999999999999999999999999999998 68865 566666799
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChh
Q 043637 588 CIHEGNVKLALQFFDSMRCKYGIIPQLE 615 (693)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 615 (693)
|+..|+|++|.++.+.|++ .|+++++.
T Consensus 701 ya~~g~~~~a~~vr~~M~~-~g~~k~~g 727 (857)
T PLN03077 701 YADAGKWDEVARVRKTMRE-NGLTVDPG 727 (857)
T ss_pred HHHCCChHHHHHHHHHHHH-cCCCCCCC
Confidence 9999999999999999997 49998765
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-67 Score=565.07 Aligned_cols=529 Identities=14% Similarity=0.163 Sum_probs=387.4
Q ss_pred CChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCC-CCCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccHHHHHHHH
Q 043637 40 VSYSLYAHLFQLCASSKAIVEARKLESNLVTFYP-TPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAY 118 (693)
Q Consensus 40 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 118 (693)
++...|..++..+++.|++++|.++|+.|.+.|+ +++..+++.++..|.+.|.+++|..+|..|..|+..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3445555555555555555555555555555553 334444455555555555555555555555555555555555555
Q ss_pred HhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHH
Q 043637 119 TQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDAR 198 (693)
Q Consensus 119 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 198 (693)
++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv------------------- 508 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH------------------- 508 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH-------------------
Confidence 5555555555555555555555555555555555555555555555555555555555554
Q ss_pred HHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHH--hcCC
Q 043637 199 RMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIK--IDFE 276 (693)
Q Consensus 199 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~ 276 (693)
+|+.+|.+|++.|++++|+++|++|...|+.||..||+.+|.+|++.|+++.|.+++++|.. .|+.
T Consensus 509 ------------TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~ 576 (1060)
T PLN03218 509 ------------TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID 576 (1060)
T ss_pred ------------HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC
Confidence 45555555555566666666666666667777777777777777777777777777777765 4567
Q ss_pred CchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC----CCcccHHHHHHHHH
Q 043637 277 GDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPE----RNVISWNAMLAGYT 352 (693)
Q Consensus 277 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~ 352 (693)
||..+|+.++.+|++.|+++ +|.++|+.|.+ |+..+|+.+|.+|+
T Consensus 577 PD~vTynaLI~ay~k~G~ld-------------------------------eA~elf~~M~e~gi~p~~~tynsLI~ay~ 625 (1060)
T PLN03218 577 PDHITVGALMKACANAGQVD-------------------------------RAKEVYQMIHEYNIKGTPEVYTIAVNSCS 625 (1060)
T ss_pred CcHHHHHHHHHHHHHCCCHH-------------------------------HHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 77777777777777777777 44444444443 56677788888888
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHH
Q 043637 353 RSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARI 432 (693)
Q Consensus 353 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 432 (693)
+.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++|.+
T Consensus 626 k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~ 705 (1060)
T PLN03218 626 QKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALE 705 (1060)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 88888888888888888889999999999999999999999999999999998999999999999999999999999988
Q ss_pred HHHhhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCC
Q 043637 433 WFYQMSQ---RRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWET-RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCY 508 (693)
Q Consensus 433 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 508 (693)
++.++.. .||..+|+.||.+|++.|++++|.++|++|...| .|+..||+.++.+|++.|+++.|.+++.+|.+.|+
T Consensus 706 lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 706 LYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 8888764 5889999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 043637 509 EINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLAC 588 (693)
Q Consensus 509 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 588 (693)
.|+..+|+.++..+.+ ++++|..+.+.+...+. .......+..+.|..+|++|.+.|+.||..||+.++.++
T Consensus 786 ~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl 857 (1060)
T PLN03218 786 KPNLVMCRCITGLCLR--RFEKACALGEPVVSFDS------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCL 857 (1060)
T ss_pred CCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhc------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Confidence 9999999999876432 35555544333221110 011111233467999999999999999999999999888
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 589 IHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 589 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
+..+..+.+..+++.|.. .+..|+..+|+.+++++.+. .++|..++++|.
T Consensus 858 ~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 858 QLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred cccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 899999999999998875 48889999999999998432 468999999985
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-65 Score=551.56 Aligned_cols=474 Identities=25% Similarity=0.399 Sum_probs=454.9
Q ss_pred CCCcccHHHHHHHHHhCCChhhHHHHHHHhhhCC-CCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhH
Q 043637 105 ERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSG-VSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESS 183 (693)
Q Consensus 105 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 183 (693)
.++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++.+.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4567799999999999999999999999998864 789999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchh
Q 043637 184 LVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEG 263 (693)
Q Consensus 184 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 263 (693)
++.+|++.|++++|.++|++|++||..+||.+|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc
Q 043637 264 MQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVIS 343 (693)
Q Consensus 264 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 343 (693)
.+++..+.+.|+.+|..++++|+++|+++|+++ +|.++|+.|.++|+.+
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~-------------------------------~A~~vf~~m~~~~~vt 292 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE-------------------------------DARCVFDGMPEKTTVA 292 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHH-------------------------------HHHHHHHhCCCCChhH
Confidence 999999999999999999999999999999999 8888888888899999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 043637 344 WNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRK 423 (693)
Q Consensus 344 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 423 (693)
||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.+++..|.+.|++|+..++++++++|++
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCHHHHHHHHHHhcccCChHHHHHHHHH
Q 043637 424 CGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWET-RPSKFTFETLLAACANISSLEQGKQIHCF 502 (693)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 502 (693)
+|++++|.++|.++. +||..+||+||.+|++.|+.++|+++|++|...| .||..||+.++.+|++.|.+++|.++|+.
T Consensus 373 ~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~ 451 (697)
T PLN03081 373 WGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451 (697)
T ss_pred CCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 999999977777664 5899999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHH-hCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hH
Q 043637 503 VIR-NCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS-SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HI 579 (693)
Q Consensus 503 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 579 (693)
|.+ .|+.|+..+|+.++++|++.|++++|.++++++. .|+..+|++++.+|...|+++.|..+++++.+ +.|+ ..
T Consensus 452 m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~ 529 (697)
T PLN03081 452 MSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLN 529 (697)
T ss_pred HHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCc
Confidence 987 7999999999999999999999999999999998 89999999999999999999999999999976 6775 57
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 043637 580 TFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ 613 (693)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 613 (693)
+|..+++.|++.|++++|.++++.|.++ |+++.
T Consensus 530 ~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k~ 562 (697)
T PLN03081 530 NYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSMH 562 (697)
T ss_pred chHHHHHHHHhCCCHHHHHHHHHHHHHc-CCccC
Confidence 9999999999999999999999999974 87644
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-63 Score=535.41 Aligned_cols=505 Identities=13% Similarity=0.176 Sum_probs=360.2
Q ss_pred CCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCC-CCchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHH
Q 043637 139 VSANQITYANVLRSSAEELELGVSKQLHGLIVKRGF-CGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVR 217 (693)
Q Consensus 139 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 217 (693)
..++...|..++..+++.|+++.|.++|++|.+.|+ +++..+++.++.+|.+.|..++|..+|+.|..||..+|+.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 356777899999999999999999999999999995 5678888999999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhH
Q 043637 218 RYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLED 297 (693)
Q Consensus 218 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 297 (693)
+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.+++++|.+.|+.||..+|+.++.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHhhhcCCCC----CCchhHHHHHHHHHhcCCHHHHHHHHhhCC------CCCcccHHHHHHHHHhCCCHHHHHHHHHHH
Q 043637 298 ARGLLDQPDE----RNIISWTSIVSGYAISGRIREARELFNEMP------ERNVISWNAMLAGYTRSLLWKEALDFVFLM 367 (693)
Q Consensus 298 a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 367 (693)
|.++|+.|.+ ||..+|+.+|.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.++|++|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7666665542 455555555555555555555555555552 145555555555555555555555555555
Q ss_pred HHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHH
Q 043637 368 RKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWN 447 (693)
Q Consensus 368 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 447 (693)
.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA----------------- 668 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA----------------- 668 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH-----------------
Confidence 555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCC-CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhC
Q 043637 448 AVLTGYARRGQSEEAMTSFSEMQWET-RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCC 526 (693)
Q Consensus 448 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (693)
.++|++|.+.| .|+..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|
T Consensus 669 ---------------~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G 733 (1060)
T PLN03218 669 ---------------FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN 733 (1060)
T ss_pred ---------------HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 44444444444 44445555555555555555555555555444444455555555555555555
Q ss_pred CHHHHHHHHhcCC----CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc------------
Q 043637 527 CLEYAIRVFKESS----SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIH------------ 590 (693)
Q Consensus 527 ~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~------------ 590 (693)
++++|.++|++|. .||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+
T Consensus 734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v 813 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPV 813 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 5555555544443 355555555555555555555555555555555555555555555543221
Q ss_pred -----------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCCHHhHHHHHHHH
Q 043637 591 -----------EGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP---FNPTVPMLRKIFDKC 656 (693)
Q Consensus 591 -----------~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~ 656 (693)
.+..+.|..+|++|.+ .|+.||..+|..++.++++.+..+.+..+++.|. ..++..+|+.+++.+
T Consensus 814 ~~f~~g~~~~~n~w~~~Al~lf~eM~~-~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 814 VSFDSGRPQIENKWTSWALMVYRETIS-AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF 892 (1060)
T ss_pred hhhhccccccccchHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh
Confidence 1234679999999997 5999999999999999999999999999999986 355677999999988
Q ss_pred HhcCCccHHHHHHHHHhh--cCCC
Q 043637 657 RKNGYATLGEWAARRLNE--LNPW 678 (693)
Q Consensus 657 ~~~g~~~~A~~~~~~~~~--~~p~ 678 (693)
.+. .++|...++.+.+ +.|+
T Consensus 893 ~~~--~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 893 GEY--DPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred ccC--hHHHHHHHHHHHHcCCCCC
Confidence 432 3689999999988 4563
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.6e-64 Score=538.04 Aligned_cols=455 Identities=32% Similarity=0.521 Sum_probs=439.9
Q ss_pred CCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCC-CCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHH
Q 043637 206 NKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLRED-IRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGS 284 (693)
Q Consensus 206 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 284 (693)
.++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|.+.++.+.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3567789999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHHHH
Q 043637 285 LTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFV 364 (693)
Q Consensus 285 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 364 (693)
++.+|++.|+++ .|.++|++|.+||..+||.++.+|++.|++++|+++|
T Consensus 164 Li~~y~k~g~~~-------------------------------~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf 212 (697)
T PLN03081 164 VLLMHVKCGMLI-------------------------------DARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALF 212 (697)
T ss_pred HHHHHhcCCCHH-------------------------------HHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHH
Confidence 999999999999 8888888888899999999999999999999999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChh
Q 043637 365 FLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKV 444 (693)
Q Consensus 365 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 444 (693)
++|.+.|+.|+..||+.++.+|+..|..+.+.+++..+.+.|+.++..+++.++++|+++|++++|.+++.++ .++|.+
T Consensus 213 ~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m-~~~~~v 291 (697)
T PLN03081 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM-PEKTTV 291 (697)
T ss_pred HHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC-CCCChh
Confidence 9999999999999999999999999999999999999999999999999999999999999999997776665 567999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 043637 445 SWNAVLTGYARRGQSEEAMTSFSEMQWET-RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYT 523 (693)
Q Consensus 445 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (693)
+||.++.+|++.|++++|+++|++|...| .|+..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+++.|+++|+
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~ 371 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred hhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHH
Q 043637 524 KCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDS 603 (693)
Q Consensus 524 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 603 (693)
++|++++|.++|++|..+|..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.
T Consensus 372 k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~ 451 (697)
T PLN03081 372 KWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451 (697)
T ss_pred HCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcch
Q 043637 604 MRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQF 683 (693)
Q Consensus 604 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 683 (693)
|.++.|+.|+..+|+.++.+|++.|++++|.+++++|...|+..+|+.++.+|..+|+++.|+.+++++++++|++..+|
T Consensus 452 m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y 531 (697)
T PLN03081 452 MSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY 531 (697)
T ss_pred HHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcch
Confidence 98778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccC
Q 043637 684 KITTNRFDR 692 (693)
Q Consensus 684 ~~l~~~y~~ 692 (693)
+.|+++|++
T Consensus 532 ~~L~~~y~~ 540 (697)
T PLN03081 532 VVLLNLYNS 540 (697)
T ss_pred HHHHHHHHh
Confidence 999999974
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.3e-36 Score=345.33 Aligned_cols=641 Identities=12% Similarity=0.015 Sum_probs=338.7
Q ss_pred ChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCC---CCcccHHHHHHH
Q 043637 41 SYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPE---RDGGSWNAMLGA 117 (693)
Q Consensus 41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 117 (693)
+...+..+...+...|++++|.++++.+.+..+ ++...+..+...+...|++++|...|++..+ .+..++..++..
T Consensus 158 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 236 (899)
T TIGR02917 158 SLYAKLGLAQLALAENRFDEARALIDEVLTADP-GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATI 236 (899)
T ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 344555555555566666666666666555432 3444455555555555666666555555432 133344444555
Q ss_pred HHhCCChhhHHHHHHHhhhCCCC--------------------------------CC-HhhHHHHHHHhhccCChHHHHH
Q 043637 118 YTQNGFPGRTLELFLDMNHSGVS--------------------------------AN-QITYANVLRSSAEELELGVSKQ 164 (693)
Q Consensus 118 ~~~~~~~~~a~~~~~~m~~~g~~--------------------------------~~-~~~~~~ll~~~~~~~~~~~a~~ 164 (693)
+...|++++|...++.+.+.... |+ ...+..+...+...|+++.|..
T Consensus 237 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 316 (899)
T TIGR02917 237 LIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQ 316 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555544433211 11 1111222223333444444444
Q ss_pred HHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCC---CCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCC
Q 043637 165 LHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQN---KNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIR 241 (693)
Q Consensus 165 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 241 (693)
.++.+.+.. +.+...+..+...+.+.|++++|...++.+.+ .+...+..+...+.+.|++++|.+.|+++.+.. +
T Consensus 317 ~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 394 (899)
T TIGR02917 317 YLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-P 394 (899)
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 444444332 22333344444455555555555555544432 223344455555555555555555555554421 1
Q ss_pred CCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcC---------------------------------CCchHHHHHHHHH
Q 043637 242 PLNFTFANALFACSFLSSPYEGMQIHGVIIKIDF---------------------------------EGDDVVLGSLTEM 288 (693)
Q Consensus 242 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---------------------------------~~~~~~~~~l~~~ 288 (693)
.+...+..+...+...|+.+.|...+..+.+... +.+..++..+...
T Consensus 395 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 474 (899)
T TIGR02917 395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI 474 (899)
T ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 1222333344444444444444444444433321 2233344444444
Q ss_pred HHHcCChhHHHhhhcCCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCHHHHHH
Q 043637 289 YVKCGRLEDARGLLDQPDE---RNIISWTSIVSGYAISGRIREARELFNEMPE---RNVISWNAMLAGYTRSLLWKEALD 362 (693)
Q Consensus 289 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 362 (693)
+...|++++|...|+++.+ .+...+..+...+...|++++|.+.|+.+.+ .+..++..+...+.+.|++++|..
T Consensus 475 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 554 (899)
T TIGR02917 475 YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVA 554 (899)
T ss_pred HHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444444444444322 1223344444444445555555555444432 233344444455555555555555
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCC--
Q 043637 363 FVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQR-- 440 (693)
Q Consensus 363 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 440 (693)
+++++...+ +.+...+..+...+...|+++.+..+++.+.+.. +.+...+..+..++...|++++|...+.++...
T Consensus 555 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 632 (899)
T TIGR02917 555 WLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP 632 (899)
T ss_pred HHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 555554432 2233344445555555555555555555554432 334455556666666666666665555555431
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 043637 441 RDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVE 520 (693)
Q Consensus 441 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 520 (693)
.+...+..+...+.+.|++++|...|+++....+.+..++..+...+...|++++|..+++.+.+... .+...+..+..
T Consensus 633 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~ 711 (899)
T TIGR02917 633 DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGD 711 (899)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHH
Confidence 23445555556666666666666666665554455555666666666666666666666666655443 24455555666
Q ss_pred HHHhhCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHH
Q 043637 521 VYTKCCCLEYAIRVFKESS--SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLAL 598 (693)
Q Consensus 521 ~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 598 (693)
.+...|++++|...++.+. .|+..++..++.++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|.
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~ 790 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAI 790 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHH
Confidence 6666666666666666654 3444555566666666777777777776666631 224456666666777777777777
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcC
Q 043637 599 QFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELN 676 (693)
Q Consensus 599 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 676 (693)
+.++++.+ ..++++..+..++..+.+.|+ .+|+.+++++. .+.++..+..++..+...|++++|...++++++.+
T Consensus 791 ~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 791 KHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 77777764 334456666667777777777 66777776653 23445566666777777777777777777777777
Q ss_pred CCCCcchhhhhhccc
Q 043637 677 PWAPFQFKITTNRFD 691 (693)
Q Consensus 677 p~~~~~~~~l~~~y~ 691 (693)
|.++.++..++.+|.
T Consensus 868 ~~~~~~~~~l~~~~~ 882 (899)
T TIGR02917 868 PEAAAIRYHLALALL 882 (899)
T ss_pred CCChHHHHHHHHHHH
Confidence 777777777776654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.9e-36 Score=344.02 Aligned_cols=643 Identities=12% Similarity=-0.012 Sum_probs=456.7
Q ss_pred CCCChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCC---CCcccHHHH
Q 043637 38 EPVSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPE---RDGGSWNAM 114 (693)
Q Consensus 38 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 114 (693)
.+.+...+..+...+...|+++.|...++.+.+..+ .+...+..+...+...|++++|.++++++.+ .+...+..+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 199 (899)
T TIGR02917 121 DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDP-RSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLK 199 (899)
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 344556777788888899999999999999988765 3566778889999999999999999988753 355678888
Q ss_pred HHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCH
Q 043637 115 LGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVM 194 (693)
Q Consensus 115 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 194 (693)
...+...|+++.|...|++..+.+ +.+..++..+...+...|++++|...++.+.+.... +..........+...|++
T Consensus 200 ~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 277 (899)
T TIGR02917 200 GDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNY 277 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCH
Confidence 888999999999999999988764 456778888888888999999999999888876532 223333333444556667
Q ss_pred HHHHHHHhccCCCCc---ccHHHHHHHHHhcCCchHHHHHHHHHHHCC--------------------------------
Q 043637 195 TDARRMFDDIQNKNA---VSWNVIVRRYLVAGNGKEAVVMFFKMLRED-------------------------------- 239 (693)
Q Consensus 195 ~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-------------------------------- 239 (693)
++|...|+.+.+.+. ..+..+...+...|++++|...|....+..
T Consensus 278 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 357 (899)
T TIGR02917 278 EDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALG 357 (899)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 777666665543211 112223334444555555555555544321
Q ss_pred -CCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCC---CchhHHH
Q 043637 240 -IRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDER---NIISWTS 315 (693)
Q Consensus 240 -~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ 315 (693)
...+...+..+...+...|+.++|...++.+.+.. +.+...+..+...+...|++++|...++...+. .......
T Consensus 358 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 436 (899)
T TIGR02917 358 LDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLL 436 (899)
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHH
Confidence 11223344444444444444444444444444332 112333444444444455555554444443321 1223444
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccch
Q 043637 316 IVSGYAISGRIREARELFNEMPE---RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEI 392 (693)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 392 (693)
++..+.+.|++++|..+++.+.. .+..++..+...+...|++++|...|+++.+.. +.+...+..+...+...|++
T Consensus 437 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 437 LILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCH
Confidence 55556666666666666666554 344567777777777777777777777776542 22344555566667777788
Q ss_pred hhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChHHHHHHHHHhh
Q 043637 393 KMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQR--RDKVSWNAVLTGYARRGQSEEAMTSFSEMQ 470 (693)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 470 (693)
++|.+.++.+.+.. +.+..++..+...+.+.|+.++|...+.+.... .+...+..++..+...|++++|.++++++.
T Consensus 516 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 516 DDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888887777654 446667777788888888888887777776542 355567778888888888888888888887
Q ss_pred hCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHH
Q 043637 471 WETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICN 547 (693)
Q Consensus 471 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~ 547 (693)
...+.+...+..+..++...|++++|...++.+.+.... +...+..+..++.+.|++++|...++++. +.+...+.
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 673 (899)
T TIGR02917 595 DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQI 673 (899)
T ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 766777788888888888889999998888888875432 56677788888888899999988888765 45677888
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 043637 548 SMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRY 627 (693)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 627 (693)
.++..+...|++++|..+++.+.+.+ +++...+..+...+...|++++|.+.++.+.. ..|+...+..++.++.+.
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~ 749 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLAS 749 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHC
Confidence 88888889999999999999888853 34567777788888999999999999999874 345557778888999999
Q ss_pred CChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhccc
Q 043637 628 GYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 628 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
|+.++|...++++. .+.+...+..++..|...|+.++|...++++++.+|+++..+..++++|.
T Consensus 750 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 815 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL 815 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999988874 45567788888889999999999999999999999999999999998875
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=4e-27 Score=266.33 Aligned_cols=626 Identities=10% Similarity=-0.006 Sum_probs=459.4
Q ss_pred hHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCC--CCcccH---------
Q 043637 43 SLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPE--RDGGSW--------- 111 (693)
Q Consensus 43 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~--------- 111 (693)
..+...++.+...++.+.|.+.++++....+ .++.++..++..+.+.|+.++|.+.+++..+ |+...+
T Consensus 29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p-~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 29 QQLLEQVRLGEATHREDLVRQSLYRLELIDP-NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHccCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Confidence 4467778888999999999999999998875 3688888999999999999999999999865 322211
Q ss_pred --------HHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhh-HHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHh
Q 043637 112 --------NAMLGAYTQNGFPGRTLELFLDMNHSGVSANQIT-YANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILES 182 (693)
Q Consensus 112 --------~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 182 (693)
..+.+.+...|++++|+..|+.+.+.+ +|+... ...........|+.++|.+.++.+.+.. +.+...+.
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~ 185 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRN 185 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 223446788999999999999998763 444322 1112222334689999999999999885 44677888
Q ss_pred HHHHHhhcCCCHHHHHHHHhccCCCCcc------cH-----------------HHHHHHHHhcCCchHHHHHHHHHHHCC
Q 043637 183 SLVDAYGKCMVMTDARRMFDDIQNKNAV------SW-----------------NVIVRRYLVAGNGKEAVVMFFKMLRED 239 (693)
Q Consensus 183 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~-----------------~~li~~~~~~~~~~~a~~~~~~m~~~g 239 (693)
.+...+...|+.++|+..++++.+.... .| ...+..+-.....+.|...+..+....
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~ 265 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL 265 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc
Confidence 9999999999999999999987542111 01 111111111122344555555544432
Q ss_pred CCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCC--CCc---hhHH
Q 043637 240 IRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDE--RNI---ISWT 314 (693)
Q Consensus 240 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~---~~~~ 314 (693)
..|+... ......+...|++++|...++...+.. +.+...+..+..++.+.|++++|+..|++..+ |+. ..|.
T Consensus 266 ~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 266 ADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred cCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 2333221 123455667899999999999998864 33678889999999999999999999987664 221 1121
Q ss_pred ------------HHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-Hhh
Q 043637 315 ------------SIVSGYAISGRIREARELFNEMPE---RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDID-QVT 378 (693)
Q Consensus 315 ------------~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~ 378 (693)
.....+.+.|++++|+..|++..+ .+...+..+...+...|++++|++.|++..+. .|+ ...
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a 421 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNA 421 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 224567889999999999999876 34456777888999999999999999999875 343 344
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHhCC--------CCchhHHHHHHHHHHHcCChHHHHHHHHhhcCC-C-ChhhHHH
Q 043637 379 LGLILNVCAGLSEIKMGKEVHGFIHRNDY--------SSNIFVSNALLDMYRKCGNLRSARIWFYQMSQR-R-DKVSWNA 448 (693)
Q Consensus 379 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~ 448 (693)
+..+...+ ..++.++|..+++.+..... ......+..+...+...|++++|+..+.+.+.. | +...+..
T Consensus 422 ~~~L~~l~-~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~ 500 (1157)
T PRK11447 422 VRGLANLY-RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYR 500 (1157)
T ss_pred HHHHHHHH-HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 44555555 34577888888765432210 011224556777888999999999999998773 4 5567788
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcch---------hHHHHHH
Q 043637 449 VLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINV---------VCRGALV 519 (693)
Q Consensus 449 l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~ 519 (693)
+...|.+.|++++|...++++....+.+...+..+...+...++.++|...++.+......+.. ..+..+.
T Consensus 501 LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 8999999999999999999987765555555555566677889999999998876543222221 1223456
Q ss_pred HHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHH
Q 043637 520 EVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLAL 598 (693)
Q Consensus 520 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~ 598 (693)
..+...|+.++|..+++. .+.+...+..+...+.+.|++++|++.|++..+ ..|+ ...+..++..+...|++++|.
T Consensus 581 ~~l~~~G~~~eA~~~l~~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQ-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHHHHCCCHHHHHHHHHh-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 778899999999999984 355666778899999999999999999999999 5675 688889999999999999999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCH------HhHHHHHHHHHhcCCccHHHHHHH
Q 043637 599 QFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPF--NPTV------PMLRKIFDKCRKNGYATLGEWAAR 670 (693)
Q Consensus 599 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 670 (693)
+.++.+.+ ..+.+...+..+..++.+.|++++|.+.++++.. +.++ ..+..+...+...|+.++|...|+
T Consensus 658 ~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 658 AQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred HHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99998864 2233456677788999999999999999998852 2222 356667888899999999999999
Q ss_pred HHhh---cCCCCCc
Q 043637 671 RLNE---LNPWAPF 681 (693)
Q Consensus 671 ~~~~---~~p~~~~ 681 (693)
+++. +.|..|.
T Consensus 736 ~Al~~~~~~~~~p~ 749 (1157)
T PRK11447 736 DAMVASGITPTRPQ 749 (1157)
T ss_pred HHHhhcCCCCCCCC
Confidence 9985 4444443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=3.4e-25 Score=250.71 Aligned_cols=597 Identities=10% Similarity=-0.017 Sum_probs=437.5
Q ss_pred hhHHHHHHhccCChhhHHHhhccCCC---CCcccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhh-----------
Q 043637 80 LNRAIECYGKCGNLDDARGLFDEMPE---RDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQIT----------- 145 (693)
Q Consensus 80 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~----------- 145 (693)
....++.+...++.+.|.+.++++.. .++..+..++..+.+.|+.++|.+.+++..+.. +.+...
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcC
Confidence 44566777888999999999998753 367788889999999999999999999998874 223222
Q ss_pred -----HHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhh-HhHHHHHhhcCCCHHHHHHHHhccCC--C-CcccHHHHH
Q 043637 146 -----YANVLRSSAEELELGVSKQLHGLIVKRGFCGNVIL-ESSLVDAYGKCMVMTDARRMFDDIQN--K-NAVSWNVIV 216 (693)
Q Consensus 146 -----~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li 216 (693)
.....+.+...|++++|.+.++.+.+.+ +|+... ...+.......|+.++|++.++++.+ | +...+..+.
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA 188 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLA 188 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 1333446788999999999999998765 333321 11122223346999999999999885 3 445678888
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCC----------------CHH---hHHHHHHHhcCCCCcchhHHHHHHHHHhcCCC
Q 043637 217 RRYLVAGNGKEAVVMFFKMLREDIRP----------------LNF---TFANALFACSFLSSPYEGMQIHGVIIKIDFEG 277 (693)
Q Consensus 217 ~~~~~~~~~~~a~~~~~~m~~~g~~p----------------~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 277 (693)
..+...|++++|+..++++....... +.. .+...+..+-.......+...+.........|
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp 268 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP 268 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence 99999999999999999986532110 000 11111222222222334444444443333333
Q ss_pred chHHHHHHHHHHHHcCChhHHHhhhcCCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcc---cHH----
Q 043637 278 DDVVLGSLTEMYVKCGRLEDARGLLDQPDE---RNIISWTSIVSGYAISGRIREARELFNEMPE--RNVI---SWN---- 345 (693)
Q Consensus 278 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~---~~~---- 345 (693)
+.. .......+...|++++|+..|++..+ .+...+..+..++.+.|++++|+..|++..+ |+.. .|.
T Consensus 269 ~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 269 AFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred chH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 322 12345677889999999999998665 3567888999999999999999999998775 3321 121
Q ss_pred --------HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHH
Q 043637 346 --------AMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNAL 417 (693)
Q Consensus 346 --------~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 417 (693)
.....+.+.|++++|...|++..+.. +.+...+..+-..+...|++++|.+.++...+.. +.+...+..+
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L 425 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGL 425 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 22345778999999999999998863 2345566677788899999999999999998764 4455666777
Q ss_pred HHHHHHcCChHHHHHHHHhhcCCC-----------ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 043637 418 LDMYRKCGNLRSARIWFYQMSQRR-----------DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAA 486 (693)
Q Consensus 418 ~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~ 486 (693)
...|. .++.++|...+....... ....+..+...+...|++++|++.|++.....+.+...+..+...
T Consensus 426 ~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~ 504 (1157)
T PRK11447 426 ANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQD 504 (1157)
T ss_pred HHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 77774 467888976665543211 122355567788899999999999999988777677888899999
Q ss_pred hcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCC----CH---------HHHHHHHHHH
Q 043637 487 CANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSL----DV---------IICNSMILGF 553 (693)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~---------~~~~~l~~~~ 553 (693)
+...|++++|...++++.+.... +...+..+...+...++.++|...++.+... +. ..+......+
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999875443 4444445555677889999999999987621 11 1123456778
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 043637 554 CHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKEL 633 (693)
Q Consensus 554 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 633 (693)
...|+.++|.++++. .+++...+..+...+.+.|++++|+..++++.+ ..+.++..+..++..|...|+.++|
T Consensus 584 ~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 899999999999872 244556777888999999999999999999985 3445678889999999999999999
Q ss_pred HHHHHhCCC--CCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCc------chhhhhhcc
Q 043637 634 EDFVNRMPF--NPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPF------QFKITTNRF 690 (693)
Q Consensus 634 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~y 690 (693)
+..+++... +.+...+..+..++...|++++|.+.++++++..|+++. .+..++.+|
T Consensus 657 ~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~ 721 (1157)
T PRK11447 657 RAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFE 721 (1157)
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHH
Confidence 999998762 345566777888899999999999999999998876653 344445554
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=6.9e-23 Score=220.73 Aligned_cols=211 Identities=11% Similarity=-0.008 Sum_probs=129.4
Q ss_pred hhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCCCc--ccHHHHHHHHHhCCChhhHHH
Q 043637 52 CASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDG--GSWNAMLGAYTQNGFPGRTLE 129 (693)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~ 129 (693)
+...|++.+|...|+.+++..|.. ..++..+...|.+.|+.++|+..+++..+.++ ..|..++..+ +++.+|..
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHH
Confidence 444588888888888888887654 77778888888888888888888888765333 2333333222 77778888
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHh-----hccCChHHHHHHHHHHHHhCCCCchhhHhHH-HHHhhcCCCHHHHHHHHhc
Q 043637 130 LFLDMNHSGVSANQITYANVLRSS-----AEELELGVSKQLHGLIVKRGFCGNVILESSL-VDAYGKCMVMTDARRMFDD 203 (693)
Q Consensus 130 ~~~~m~~~g~~~~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~ 203 (693)
+++++.+.. +-+..++..+.... ....+.++|.+.++ .......|+..+.... ...|.+.|++++|++++.+
T Consensus 130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 888887763 22334444444430 11223355555555 3333333344433333 7777777787777777777
Q ss_pred cCCCCcc---cHHHHHHHHHh-cCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHh
Q 043637 204 IQNKNAV---SWNVIVRRYLV-AGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKI 273 (693)
Q Consensus 204 ~~~~~~~---~~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 273 (693)
+.+.++. ....|-..|.. .++ +.+..+++. .++-+......+...+...|+.+.|..++..+...
T Consensus 208 L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 208 ARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 7653222 24445555555 255 666666442 23356667777777777777777777777765544
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=1.2e-21 Score=211.30 Aligned_cols=576 Identities=9% Similarity=-0.042 Sum_probs=359.7
Q ss_pred ccCChhhHHHhhccCCC--C-CcccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHH
Q 043637 89 KCGNLDDARGLFDEMPE--R-DGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQL 165 (693)
Q Consensus 89 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 165 (693)
..|++++|+..|+...+ | +..++..|.+.|...|+.++|+..+++..+. .|+...|..++..+ ++.++|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHH
Confidence 34777777777776643 2 3445666677777777777777777777665 33333333333222 666677777
Q ss_pred HHHHHHhCCCCchhhHhHHHHH--------hhcCCCHHHHHHHHhccCCCC--cccHH-HHHHHHHhcCCchHHHHHHHH
Q 043637 166 HGLIVKRGFCGNVILESSLVDA--------YGKCMVMTDARRMFDDIQNKN--AVSWN-VIVRRYLVAGNGKEAVVMFFK 234 (693)
Q Consensus 166 ~~~~~~~g~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~--~~~~~-~li~~~~~~~~~~~a~~~~~~ 234 (693)
++++.+.. +.+..++..+... |.+.+...++++ .+...++ ..... .+...|.+.|++++|++++.+
T Consensus 131 ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 131 VEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 77777664 2334444444444 555555555554 2222232 22223 336667777777777777777
Q ss_pred HHHCCCCCCHHhHHHHHHHhcC-CCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCC-----C
Q 043637 235 MLREDIRPLNFTFANALFACSF-LSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDE-----R 308 (693)
Q Consensus 235 m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~ 308 (693)
+.+.+.. +..-...+-.++.. .++ +.+..+++. ....+......+.+.|.+.|+.++|..+++++.. |
T Consensus 208 L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~ 281 (987)
T PRK09782 208 ARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA 281 (987)
T ss_pred HHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence 7765422 22234444444444 244 444444332 2235666677777777777777777777665442 1
Q ss_pred Cchh------------------------------HHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHH--HhCCC
Q 043637 309 NIIS------------------------------WTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGY--TRSLL 356 (693)
Q Consensus 309 ~~~~------------------------------~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~--~~~~~ 356 (693)
...+ .-.++..+.+.++++.+.++.. . .|.... ..+... ...+.
T Consensus 282 ~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~--~~~r~~~~~~~~~ 357 (987)
T PRK09782 282 QEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-T-LPANEM--LEERYAVSVATRN 357 (987)
T ss_pred ccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-C-CCcchH--HHHHHhhccccCc
Confidence 1111 1112344455555555554422 1 111111 122211 12244
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHh-C-CCCchhHHHHHHHHHHHcCC---hHHH-
Q 043637 357 WKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRN-D-YSSNIFVSNALLDMYRKCGN---LRSA- 430 (693)
Q Consensus 357 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a- 430 (693)
..++...+..|.+.. +-+......+.-.....|+.++|.++++..... + -..+......++..|.+.+. ..++
T Consensus 358 ~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 436 (987)
T PRK09782 358 KAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA 436 (987)
T ss_pred hhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence 555555555554431 112222222223334566667777776666542 1 12233344456666665544 2222
Q ss_pred ------------------------HHHHHhhcCC--C--ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHH
Q 043637 431 ------------------------RIWFYQMSQR--R--DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFET 482 (693)
Q Consensus 431 ------------------------~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ 482 (693)
...+...+.. + +...|..+..++.. ++.++|+..+.+.... .|+......
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~-~Pd~~~~L~ 514 (987)
T PRK09782 437 ILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR-QPDAWQHRA 514 (987)
T ss_pred HhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh-CCchHHHHH
Confidence 2222222322 2 45567777777776 8899999988887655 355555555
Q ss_pred HHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhCCCh
Q 043637 483 LLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSS---LDVIICNSMILGFCHNERG 559 (693)
Q Consensus 483 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 559 (693)
+...+...|++++|...++++... .|+...+..+...+.+.|+.++|...++.... .+...+..+...+...|++
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCH
Confidence 566667899999999999987654 23344456677888999999999999988773 2333333444455567999
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 043637 560 REALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNR 639 (693)
Q Consensus 560 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 639 (693)
++|...+++..+ +.|+...+..+..++.+.|++++|+..+++..+ -.+.+...+..+...+...|++++|+..+++
T Consensus 593 ~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 593 ELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999998 678888899999999999999999999999985 3444577788889999999999999999998
Q ss_pred CC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhccc
Q 043637 640 MP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 640 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
.. .+.++..+..+..++...|++++|...++++++++|++.......+++..
T Consensus 669 AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 669 AHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ 722 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence 75 45667789999999999999999999999999999999888888887654
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=5.7e-21 Score=182.16 Aligned_cols=367 Identities=11% Similarity=0.048 Sum_probs=273.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH-Hhc
Q 043637 313 WTSIVSGYAISGRIREARELFNEMPE---RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNV-CAG 388 (693)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~ 388 (693)
|..+.+.+-..|++++|+..++.+.+ ..+..|..+..++...|+.+.|...|.+..+ +.|+.....+-+.- +..
T Consensus 119 ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka 196 (966)
T KOG4626|consen 119 YSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKA 196 (966)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHh
Confidence 33344444444444455555554443 2334455555555555555555555555443 34443333322222 223
Q ss_pred ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC-CCC-hhhHHHHHHHHHhcCChHHHHHHH
Q 043637 389 LSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ-RRD-KVSWNAVLTGYARRGQSEEAMTSF 466 (693)
Q Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 466 (693)
.|++++|...+.+.++.. +.-...|+.|...+-..|++..|+..+++... +|+ ..+|-.|...|...+.+++|+..+
T Consensus 197 ~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred hcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 455666665555555432 22345677777788888888888888888877 343 457888888899999999999888
Q ss_pred HHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCH
Q 043637 467 SEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDV 543 (693)
Q Consensus 467 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~ 543 (693)
.+.....+.....+..+...|...|..+.|..-+++.++..+. -+..|+.|..++...|+..+|.+.+.+.. +...
T Consensus 276 ~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ha 354 (966)
T KOG4626|consen 276 LRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHA 354 (966)
T ss_pred HHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccH
Confidence 8877665666778888888888999999999999988885443 46778889999999999999999998876 5556
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHH
Q 043637 544 IICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ-LEHYECMI 621 (693)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 621 (693)
...+.|...+...|.+++|..+|....+ +.|.- ..++.|...|-++|++++|+..++++. .+.|+ ...|+.+.
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmG 429 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMG 429 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcc
Confidence 7888999999999999999999999998 78874 778999999999999999999999987 57787 56789999
Q ss_pred HHHHhcCChHHHHHHHHhCC-CCC-CHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhh
Q 043637 622 KLYCRYGYMKELEDFVNRMP-FNP-TVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTN 688 (693)
Q Consensus 622 ~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 688 (693)
..|-..|+.+.|++.+.+.. .+| -......+...|.-+|+..+|++.|+.+++++|+.|.++.+|+.
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh 498 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLH 498 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHH
Confidence 99999999999999998875 344 35577888899999999999999999999999999999888764
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.91 E-value=3.7e-19 Score=179.13 Aligned_cols=634 Identities=12% Similarity=0.031 Sum_probs=436.4
Q ss_pred hHHHHHHHHhhcCccHHHHHHHHHHHHHhCC----CCCch---hhhHHHHHHhcc-----------CChhhHHHhhccCC
Q 043637 43 SLYAHLFQLCASSKAIVEARKLESNLVTFYP----TPPVF---LLNRAIECYGKC-----------GNLDDARGLFDEMP 104 (693)
Q Consensus 43 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~---~~~~l~~~~~~~-----------g~~~~A~~~~~~~~ 104 (693)
.+|..+...|...|..++...+++...-... .++.. .++.+..-|+.. ..+..|.-+|+...
T Consensus 42 e~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ 121 (1018)
T KOG2002|consen 42 EAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLAD 121 (1018)
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHH
Confidence 5799999999999999999999998762211 11111 111122222111 12223333443322
Q ss_pred CCCcccHHHH---HHHHHhCCC--hhhHHHHHHHhhhCCCCCCHhhHHHHHHHhh--ccCChHHHHHHHHHHHHhCC--C
Q 043637 105 ERDGGSWNAM---LGAYTQNGF--PGRTLELFLDMNHSGVSANQITYANVLRSSA--EELELGVSKQLHGLIVKRGF--C 175 (693)
Q Consensus 105 ~~~~~~~~~l---i~~~~~~~~--~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~--~ 175 (693)
..+......+ -..|...|. .+.|...|....+.. +++.- ..+.++|. ..+++..|..+|+....... .
T Consensus 122 ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil--~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~ 198 (1018)
T KOG2002|consen 122 KIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNIL--ALLGKARIAYNKKDYRGALKYYKKALRINPACK 198 (1018)
T ss_pred HhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchH--HHHHHHHHHhccccHHHHHHHHHHHHhcCcccC
Confidence 2111111111 112233333 478888888887763 44433 34445554 67899999999999776653 4
Q ss_pred CchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHH---hc---CCchHHHHHHHHHHHCCCCCCHHhHHH
Q 043637 176 GNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYL---VA---GNGKEAVVMFFKMLREDIRPLNFTFAN 249 (693)
Q Consensus 176 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~---~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~ 249 (693)
||+. ..+...+.+.|+.+.|...|.+..+-|+...++++.... .. ..+..++.++...-... .-++...+.
T Consensus 199 aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~ 275 (1018)
T KOG2002|consen 199 ADVR--IGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNH 275 (1018)
T ss_pred CCcc--chhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHH
Confidence 4443 344567789999999999999999877665555543221 22 23455555555543321 235567788
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHhcCC--CchHHHHHHHHHHHHcCChhHHHhhhcCCCCC--C--chhHHHHHHHHHhc
Q 043637 250 ALFACSFLSSPYEGMQIHGVIIKIDFE--GDDVVLGSLTEMYVKCGRLEDARGLLDQPDER--N--IISWTSIVSGYAIS 323 (693)
Q Consensus 250 ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~--~~~~~~li~~~~~~ 323 (693)
|.+.+...|+...+..+...+...... .-...|--+.++|...|++++|...|-+..+. + +..+-.+...+...
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR 355 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHh
Confidence 888999999999999999988776422 22345777889999999999999999776552 2 34566788999999
Q ss_pred CCHHHHHHHHhhCCC--C-CcccHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHH
Q 043637 324 GRIREARELFNEMPE--R-NVISWNAMLAGYTRSL----LWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGK 396 (693)
Q Consensus 324 g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 396 (693)
|+.+.+...|+.+.+ | +..+...|...|...+ ..++|..++.+..+.- +-|...|..+-..+....-+. ..
T Consensus 356 ~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL 433 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SL 433 (1018)
T ss_pred chHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HH
Confidence 999999999999876 3 4456666667777664 4566666666655432 334455555555554443333 24
Q ss_pred HHHH----HHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCC------CCh------hhHHHHHHHHHhcCChH
Q 043637 397 EVHG----FIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQR------RDK------VSWNAVLTGYARRGQSE 460 (693)
Q Consensus 397 ~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~------~~~~~l~~~~~~~~~~~ 460 (693)
.++. .+...+..+.+.+.|.+...+...|++++|...+.+.... ++. .+--.+...+-..++++
T Consensus 434 ~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~ 513 (1018)
T KOG2002|consen 434 DAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTE 513 (1018)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhh
Confidence 4444 3445666788899999999999999999998888887663 222 12233556666778999
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC-
Q 043637 461 EAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS- 539 (693)
Q Consensus 461 ~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 539 (693)
.|.+.|..+....+.-...|..++......+...+|...++......- .++..++.+...+.+...+..|..-|..+.
T Consensus 514 ~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~ 592 (1018)
T KOG2002|consen 514 VAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILK 592 (1018)
T ss_pred HHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHh
Confidence 999999999887655566676666444556788889888888877332 255556667778888888877777444333
Q ss_pred ----CCCHHHHHHHHHHHHh------------CCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHH
Q 043637 540 ----SLDVIICNSMILGFCH------------NERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFD 602 (693)
Q Consensus 540 ----~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (693)
.+|+.+.-.|...|.. .+..++|+++|.+.+. ..| |...-+.+.-.++..|+++.|..+|.
T Consensus 593 ~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFs 670 (1018)
T KOG2002|consen 593 KTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFS 670 (1018)
T ss_pred hhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHH
Confidence 4566665555554432 2347788999998888 566 66888888889999999999999999
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCC
Q 043637 603 SMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP----FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 603 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 678 (693)
++.+. ......+|-.+..+|..+|++-.|+++|+... ...++.....|..++...|.+.+|..++..+..+.|.
T Consensus 671 qVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 671 QVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 99873 33455678889999999999999999998663 4667888889999999999999999999999999999
Q ss_pred CCcchhhhhhc
Q 043637 679 APFQFKITTNR 689 (693)
Q Consensus 679 ~~~~~~~l~~~ 689 (693)
++....+++-+
T Consensus 749 ~~~v~FN~a~v 759 (1018)
T KOG2002|consen 749 NTSVKFNLALV 759 (1018)
T ss_pred cchHHhHHHHH
Confidence 99887777654
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.7e-18 Score=173.05 Aligned_cols=576 Identities=13% Similarity=0.060 Sum_probs=401.7
Q ss_pred HHHHHHHHHHHhCCCCCchhhhHHHHHHhccCC--hhhHHHhhccCCCCCcc-cHHHHHHHH--HhCCChhhHHHHHHHh
Q 043637 60 EARKLESNLVTFYPTPPVFLLNRAIECYGKCGN--LDDARGLFDEMPERDGG-SWNAMLGAY--TQNGFPGRTLELFLDM 134 (693)
Q Consensus 60 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~-~~~~li~~~--~~~~~~~~a~~~~~~m 134 (693)
.|..+|..+-+..+..++..+..-.- |...|. .+.|...|..+.+.++. ..-.+..++ ...+++..|+.+|...
T Consensus 112 ~at~~~~~A~ki~m~~~~~l~~~~~~-~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~a 190 (1018)
T KOG2002|consen 112 KATLLFDLADKIDMYEDSHLLVQRGF-LLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKA 190 (1018)
T ss_pred HHHHHhhHHHHhhccCcchhhhhhhh-hhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 34455555544444333333222111 112233 58888888887654333 333444554 3567899999999986
Q ss_pred hhC--CCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcC---CCHHHHHHHHhccC---C
Q 043637 135 NHS--GVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKC---MVMTDARRMFDDIQ---N 206 (693)
Q Consensus 135 ~~~--g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~---~ 206 (693)
... ..+||.. ..+-..+.+.++.+.|...|....+... -++.++..|...-... ..+..+..++...- .
T Consensus 191 l~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~ 267 (1018)
T KOG2002|consen 191 LRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN 267 (1018)
T ss_pred HhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC
Confidence 543 3445542 2233455688899999999988887642 2333333333222222 33444555555443 3
Q ss_pred CCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCC--CCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHH
Q 043637 207 KNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIR--PLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGS 284 (693)
Q Consensus 207 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 284 (693)
.|++..+.|...|.-.|+++.++.+...+...... .-...|-.+.+++-..|+++.|...|-...+.....-+..+-.
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 57888899999999999999999999888764311 1234688888999999999999999887766543333444556
Q ss_pred HHHHHHHcCChhHHHhhhcCCCCC---CchhHHHHHHHHHhcC----CHHHHHHHHhhCCCC---CcccHHHHHHHHHhC
Q 043637 285 LTEMYVKCGRLEDARGLLDQPDER---NIISWTSIVSGYAISG----RIREARELFNEMPER---NVISWNAMLAGYTRS 354 (693)
Q Consensus 285 l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 354 (693)
|...|.+.|+++.+...|+++.+. +..+...|...|+..+ ..+.|..++.+..++ |...|-.+...+-..
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 788999999999999999887652 4456666667776664 567777777777663 455666665555554
Q ss_pred CCHHHHHHHHHH----HHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHh---CCC------CchhHHHHHHHHH
Q 043637 355 LLWKEALDFVFL----MRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRN---DYS------SNIFVSNALLDMY 421 (693)
Q Consensus 355 ~~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~------~~~~~~~~l~~~~ 421 (693)
.-+.. +..|.. |...+-.+.....|.+-......|.+..|...+...... ... ++..+--.+..++
T Consensus 428 d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 428 DPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred ChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 44433 666554 345566678888888888889999999999988887654 112 2222344466777
Q ss_pred HHcCChHHHHHHHHhhcCC-CCh-hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHH
Q 043637 422 RKCGNLRSARIWFYQMSQR-RDK-VSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQI 499 (693)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 499 (693)
...++.+.|.+.+.+.+.. |+- ..|-.+.......+...+|...+.........++..+..+...+.....+..|.+-
T Consensus 507 E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~ 586 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKK 586 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccH
Confidence 7788999998888888774 443 34555554444567888999999998777755555555666677788888888887
Q ss_pred HHHHHHh-CCCcchhHHHHHHHHHHh------------hCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHH
Q 043637 500 HCFVIRN-CYEINVVCRGALVEVYTK------------CCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREAL 563 (693)
Q Consensus 500 ~~~~~~~-~~~~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 563 (693)
|....+. ...+|+.+.-+|.+.|.. .+..++|+++|.++. +.|...-|.+.-+++..|++..|.
T Consensus 587 f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~ 666 (1018)
T KOG2002|consen 587 FETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEAR 666 (1018)
T ss_pred HHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHH
Confidence 7766652 223577777777776543 356788999999877 556778888999999999999999
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 564 EVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 564 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
.+|.+..+... -...+|..+.++|...|+|..|+++|+....++.-.-++.+...|.+++.+.|.+.+|.+.+....
T Consensus 667 dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 667 DIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999743 345678899999999999999999999999887877789999999999999999999999887664
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=9.8e-19 Score=167.10 Aligned_cols=273 Identities=15% Similarity=0.136 Sum_probs=192.8
Q ss_pred ccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 043637 342 ISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMY 421 (693)
Q Consensus 342 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 421 (693)
..|+.|...+-..|+...|+..|++..+. .|+ -...|-.|...|
T Consensus 219 iawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~----------------------------------f~dAYiNLGnV~ 262 (966)
T KOG4626|consen 219 IAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPN----------------------------------FLDAYINLGNVY 262 (966)
T ss_pred eeehhcchHHhhcchHHHHHHHHHHhhcC--CCc----------------------------------chHHHhhHHHHH
Confidence 45666666666777777777777666542 222 122344455556
Q ss_pred HHcCChHHHHHHHHhhcC-CC-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHH
Q 043637 422 RKCGNLRSARIWFYQMSQ-RR-DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQI 499 (693)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 499 (693)
...+.++.|...+...+. +| ..+.+..+...|-.+|..+-|++.+++.....+.-...|+.+..++-..|++.+|.+.
T Consensus 263 ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~c 342 (966)
T KOG4626|consen 263 KEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDC 342 (966)
T ss_pred HHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHH
Confidence 666666666666665554 23 3445666666677777777777777777666555567777777787777888888888
Q ss_pred HHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 043637 500 HCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS--SL-DVIICNSMILGFCHNERGREALEVFGLMKKEGIKP 576 (693)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 576 (693)
+......... .....+.|...|...|.+++|..+|.... -| -....+.|...|...|++++|+..+++.+. +.|
T Consensus 343 YnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P 419 (966)
T KOG4626|consen 343 YNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKP 419 (966)
T ss_pred HHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCc
Confidence 7777775443 45566677888888888888888887766 22 334778888888899999999999998888 888
Q ss_pred Ch-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHH-hHHHH
Q 043637 577 DH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ-LEHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVP-MLRKI 652 (693)
Q Consensus 577 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l 652 (693)
+. ..|+.+...|-..|+.+.|++.+.+++ .+.|. .+.++.|..+|-.+|+..+|++.+++.. .+||.| .+-.+
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI---~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRAI---QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHHH---hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 75 788888889999999999999998887 35565 5667888888999999999998888764 455544 44444
Q ss_pred HHHH
Q 043637 653 FDKC 656 (693)
Q Consensus 653 ~~~~ 656 (693)
+...
T Consensus 497 lh~l 500 (966)
T KOG4626|consen 497 LHCL 500 (966)
T ss_pred HHHH
Confidence 4443
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=2.3e-17 Score=174.74 Aligned_cols=342 Identities=10% Similarity=-0.043 Sum_probs=166.8
Q ss_pred HHHcCChhHHHhhhcCCCCC------CchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCHHH
Q 043637 289 YVKCGRLEDARGLLDQPDER------NIISWTSIVSGYAISGRIREARELFNEMPE---RNVISWNAMLAGYTRSLLWKE 359 (693)
Q Consensus 289 ~~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 359 (693)
+.+..+++.-.-.|....+. +..-...++..+.+.|+.++|..+++.... .+...+..++.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 34556666555555544431 222344455566666666666666665544 223344444555555666666
Q ss_pred HHHHHHHHHHcCCCCC-HhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhc
Q 043637 360 ALDFVFLMRKTTKDID-QVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMS 438 (693)
Q Consensus 360 a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 438 (693)
|...++++... .|+ ...+..+...+...|+.+.|...++...+.. +.+...+..+...+...|+.++|...+....
T Consensus 95 A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 95 VLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 66666666553 232 2334444445555555555555555555432 2334445555555555555555555454433
Q ss_pred C-CCC-hhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHH
Q 043637 439 Q-RRD-KVSWNAVLTGYARRGQSEEAMTSFSEMQWET-RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCR 515 (693)
Q Consensus 439 ~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 515 (693)
. .|+ ...+..+ ..+...|++++|...++.+.... .++......+..++...|++++|...++.+.+.... +...+
T Consensus 172 ~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~ 249 (656)
T PRK15174 172 QEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALR 249 (656)
T ss_pred HhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHH
Confidence 2 222 1222222 22445555555555555544433 222333333344455555555555555555543322 33444
Q ss_pred HHHHHHHHhhCCHHH----HHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHH
Q 043637 516 GALVEVYTKCCCLEY----AIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLA 587 (693)
Q Consensus 516 ~~l~~~~~~~~~~~~----A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~ 587 (693)
..+...|...|++++ |...+++.. +.+...+..+...+...|++++|...+++..+ ..|+. ..+..+..+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 445555555555543 455554443 33344555555555555555555555555555 33432 334444455
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 588 CIHEGNVKLALQFFDSMRCKYGIIPQL-EHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
+.+.|++++|...++++.+. .|+. ..+..+..++...|+.++|+..|++.
T Consensus 328 l~~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLARE---KGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55555555555555555431 2222 22222344455555555555555544
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=2.7e-18 Score=173.88 Aligned_cols=222 Identities=12% Similarity=0.054 Sum_probs=119.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCC----HHHHHHHHHH
Q 043637 414 SNALLDMYRKCGNLRSARIWFYQMSQR--RDKVSWNAVLTGYARRGQSEEAMTSFSEMQWET-RPS----KFTFETLLAA 486 (693)
Q Consensus 414 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~----~~~~~~ll~~ 486 (693)
+..+...|.+.|++++|...+.++... .+..++..++..+.+.|++++|.+.++.+...+ .+. ...+..+...
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 344455555555555555555554432 233445555555555555555555555554443 111 1123344445
Q ss_pred hcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC--CCC--HHHHHHHHHHHHhCCChHHH
Q 043637 487 CANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS--SLD--VIICNSMILGFCHNERGREA 562 (693)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~--~~~~~~l~~~~~~~g~~~~A 562 (693)
+...|++++|...++++.+.... +...+..+...|.+.|++++|.+.++++. .|+ ...++.++.+|...|++++|
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 55556666666666655553322 23344555555666666666666665554 222 23455566666666666666
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh---cCChHHHHHHHHh
Q 043637 563 LEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCR---YGYMKELEDFVNR 639 (693)
Q Consensus 563 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 639 (693)
...++++.+ ..|+...+..++..+.+.|++++|..+++++.+ ..|+...+..++..+.. .|+.++++.++++
T Consensus 269 ~~~l~~~~~--~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~---~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 269 LEFLRRALE--EYPGADLLLALAQLLEEQEGPEAAQALLREQLR---RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred HHHHHHHHH--hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH---hCcCHHHHHHHHHHhhhccCCccchhHHHHHHH
Confidence 666666666 345555555555666666666666666666653 24555555555555443 3466666666665
Q ss_pred CC
Q 043637 640 MP 641 (693)
Q Consensus 640 ~~ 641 (693)
|.
T Consensus 344 ~~ 345 (389)
T PRK11788 344 LV 345 (389)
T ss_pred HH
Confidence 53
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=5.9e-18 Score=171.37 Aligned_cols=260 Identities=13% Similarity=0.071 Sum_probs=211.6
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHhhcCCCC------hhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHH
Q 043637 410 NIFVSNALLDMYRKCGNLRSARIWFYQMSQRRD------KVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETL 483 (693)
Q Consensus 410 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~l 483 (693)
+..++..+...+...|++++|...+..++..++ ...+..+...|.+.|++++|..+|+++....+++..++..+
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l 147 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQL 147 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 344566666677777777777776666665442 23577888999999999999999999987767778899999
Q ss_pred HHHhcccCChHHHHHHHHHHHHhCCCcc----hhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhC
Q 043637 484 LAACANISSLEQGKQIHCFVIRNCYEIN----VVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHN 556 (693)
Q Consensus 484 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 556 (693)
+..+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...++++. +.+...+..+...+.+.
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 227 (389)
T PRK11788 148 LEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQ 227 (389)
T ss_pred HHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHC
Confidence 9999999999999999999998654432 2245567778889999999999999876 34466888899999999
Q ss_pred CChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 043637 557 ERGREALEVFGLMKKEGIKPD--HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELE 634 (693)
Q Consensus 557 g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 634 (693)
|++++|.+.++++.+. .|+ ..++..++.+|...|++++|.+.++++.+ ..|+...+..++..+.+.|++++|.
T Consensus 228 g~~~~A~~~~~~~~~~--~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~ 302 (389)
T PRK11788 228 GDYAAAIEALERVEEQ--DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQ 302 (389)
T ss_pred CCHHHHHHHHHHHHHH--ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999984 454 35678889999999999999999999985 2577777788999999999999999
Q ss_pred HHHHhCC-CCCCHHhHHHHHHHHHh---cCCccHHHHHHHHHhh
Q 043637 635 DFVNRMP-FNPTVPMLRKIFDKCRK---NGYATLGEWAARRLNE 674 (693)
Q Consensus 635 ~~~~~~~-~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 674 (693)
.+++++. ..|+.+.+..++..+.. .|+..++...++++++
T Consensus 303 ~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 303 ALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 9998775 56888888877776664 4588888888887775
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=6.2e-17 Score=172.42 Aligned_cols=419 Identities=9% Similarity=-0.072 Sum_probs=269.5
Q ss_pred hHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCC---CCchhHHHHHHHHHh
Q 043637 246 TFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDE---RNIISWTSIVSGYAI 322 (693)
Q Consensus 246 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 322 (693)
.+......+.+.|+++.|...|+..++. .|+...|..+..+|.+.|++++|+..+++..+ .+...+..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4455566667777777777777776654 34556677777777777777777777766543 234466666677777
Q ss_pred cCCHHHHHHHHhhCCCCC---cccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHH
Q 043637 323 SGRIREARELFNEMPERN---VISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVH 399 (693)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 399 (693)
.|++++|+.-|......+ ......++..+.. ..+........+.. +++..... .+..+...........-+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVT-FVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHH-HHHHHHHHccCCcchhhh
Confidence 777777766654433211 1111111111111 11222222222211 11111111 111111110111111001
Q ss_pred HHHHHhCCCCch-hHHHHHHHH---HHHcCChHHHHHHHHhhcCC----C-ChhhHHHHHHHHHhcCChHHHHHHHHHhh
Q 043637 400 GFIHRNDYSSNI-FVSNALLDM---YRKCGNLRSARIWFYQMSQR----R-DKVSWNAVLTGYARRGQSEEAMTSFSEMQ 470 (693)
Q Consensus 400 ~~~~~~~~~~~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 470 (693)
....+ ..+.. ..+..+... ....+++++|...+.+.+.. | ....|+.+...+...|++++|+..|++..
T Consensus 281 ~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 281 EDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 10000 01110 011111111 12346788888888887753 2 34567788888889999999999999987
Q ss_pred hCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHH
Q 043637 471 WETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICN 547 (693)
Q Consensus 471 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~ 547 (693)
...+.....|..+...+...|++++|...++++.+.... +...+..+...+...|++++|...|++.. +.+...+.
T Consensus 359 ~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~ 437 (615)
T TIGR00990 359 ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI 437 (615)
T ss_pred HcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH
Confidence 776666778888888899999999999999999886543 56788888999999999999999999876 44567788
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hh-------HHH
Q 043637 548 SMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ-LE-------HYE 618 (693)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~-------~~~ 618 (693)
.+...+.+.|++++|+..+++..+ ..|+ ...++.+..++...|++++|+..|++..+ +.|+ .. .+.
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHH
Confidence 888999999999999999999888 4565 57888888999999999999999999874 2222 11 112
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 619 CMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 619 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
.....+...|++++|...+++.. .+.+...+..++..+...|++++|...++++.++.+...
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 22223445799999999998863 334455788889999999999999999999999887543
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=1.6e-16 Score=172.28 Aligned_cols=392 Identities=8% Similarity=-0.058 Sum_probs=246.0
Q ss_pred HHHHHHcCChhHHHhhhcCCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCHHH
Q 043637 286 TEMYVKCGRLEDARGLLDQPDE---RNIISWTSIVSGYAISGRIREARELFNEMPE---RNVISWNAMLAGYTRSLLWKE 359 (693)
Q Consensus 286 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 359 (693)
+......|+.++|++++.+... .+...+..+...+.+.|++++|.++++...+ .+...+..+...+...|++++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 3344445555555555544332 1222344555555555555566666655432 223344455555666666666
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC
Q 043637 360 ALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ 439 (693)
Q Consensus 360 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 439 (693)
|+..+++..+. .|+...+..+..++...|+.+.|...++.+.+.. +.+...+..+..++...+..+.|+..+.....
T Consensus 102 A~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 102 ALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 66666666554 2222114445555556666666666666666543 33444455566666667777777666665555
Q ss_pred CCChh------hHHHHHHHHH-----hcCCh---HHHHHHHHHhhhCC--CCCHH-HHH----HHHHHhcccCChHHHHH
Q 043637 440 RRDKV------SWNAVLTGYA-----RRGQS---EEAMTSFSEMQWET--RPSKF-TFE----TLLAACANISSLEQGKQ 498 (693)
Q Consensus 440 ~~~~~------~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~~--~p~~~-~~~----~ll~~~~~~~~~~~a~~ 498 (693)
.|+.. ....++.... ..+++ ++|++.++.+.... .|+.. .+. ..+.++...|+.++|..
T Consensus 179 ~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~ 258 (765)
T PRK10049 179 TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVIS 258 (765)
T ss_pred CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 43310 1111222221 12233 67788888876542 33221 111 11334456688899999
Q ss_pred HHHHHHHhCCC-cchhHHHHHHHHHHhhCCHHHHHHHHhcCC--CCC-----HHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 043637 499 IHCFVIRNCYE-INVVCRGALVEVYTKCCCLEYAIRVFKESS--SLD-----VIICNSMILGFCHNERGREALEVFGLMK 570 (693)
Q Consensus 499 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 570 (693)
.|+.+.+.+.. |+. ....+...|...|++++|+..|+++. .|. ......+..++...|++++|.+.++++.
T Consensus 259 ~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~ 337 (765)
T PRK10049 259 EYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTI 337 (765)
T ss_pred HHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 99988876532 322 22235678888999999999988765 221 2345667778889999999999999988
Q ss_pred HCC-----------CCCCh---HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 043637 571 KEG-----------IKPDH---ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDF 636 (693)
Q Consensus 571 ~~g-----------~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 636 (693)
+.. -.|+. ..+..+...+...|++++|++.++++.. ..+.+...+..++..+...|++++|++.
T Consensus 338 ~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~ 415 (765)
T PRK10049 338 NNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENE 415 (765)
T ss_pred hcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 741 11231 2345566888899999999999999985 4555677888899999999999999999
Q ss_pred HHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcch
Q 043637 637 VNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQF 683 (693)
Q Consensus 637 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 683 (693)
+++.. .+.+...+...+..+...|++++|+..++.+++..|+++.+.
T Consensus 416 l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 416 LKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99886 344456777777788889999999999999999999888654
No 22
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.82 E-value=1.4e-14 Score=145.76 Aligned_cols=630 Identities=10% Similarity=0.034 Sum_probs=417.4
Q ss_pred CChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCC---CCCcccHHHHHH
Q 043637 40 VSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMP---ERDGGSWNAMLG 116 (693)
Q Consensus 40 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 116 (693)
|...........+...|++++|.+++.++.+..+ .....|..|..+|-..|+.+++...+-... ..|...|..+..
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 3345555566666677999999999999999975 467889999999999999999988875543 346677888888
Q ss_pred HHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHh----HHHHHhhcCC
Q 043637 117 AYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILES----SLVDAYGKCM 192 (693)
Q Consensus 117 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~l~~~~~~~g 192 (693)
-..+.|+++.|.-+|.+..+.. +++...+---...|-+.|+...|..-+.++.....+.|..-.. ..++.+...+
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 8899999999999999999874 5555555556677889999999999999998876433433333 3455667778
Q ss_pred CHHHHHHHHhccCC-----CCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhH--------------------
Q 043637 193 VMTDARRMFDDIQN-----KNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTF-------------------- 247 (693)
Q Consensus 193 ~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-------------------- 247 (693)
+-+.|.+.++.... -+...++.++..+.+...++.|......+......+|..-+
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 88999988887764 34556899999999999999999998888762222222111
Q ss_pred ------HHHHHHhcCCCCcchhHHHHHHHHHhc--CCCchHHHHHHHHHHHHcCChhHHHhhhcCCCC----CCchhHHH
Q 043637 248 ------ANALFACSFLSSPYEGMQIHGVIIKID--FEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDE----RNIISWTS 315 (693)
Q Consensus 248 ------~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ 315 (693)
.-+.-++.+....+....+...+.+.. +..+...|.-+.++|...|++.+|+.+|..+.. .+...|-.
T Consensus 375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 375 SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 122334455566666666777777776 455677899999999999999999999988765 35678999
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCC---cccHHHHHHHHHhCCCHHHHHHHHHHHH--------HcCCCCCHhhHHHHHH
Q 043637 316 IVSGYAISGRIREARELFNEMPERN---VISWNAMLAGYTRSLLWKEALDFVFLMR--------KTTKDIDQVTLGLILN 384 (693)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~ll~ 384 (693)
+..+|...|..++|.+.++.....+ ...--.|-..+.+.|+.++|++.++.+. ..+..|+.........
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d 534 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCD 534 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHH
Confidence 9999999999999999999988733 3344455667889999999999999864 2234444444445555
Q ss_pred HHhcccchhhHHHHHHHHHHhC----------------------CCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC---
Q 043637 385 VCAGLSEIKMGKEVHGFIHRND----------------------YSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ--- 439 (693)
Q Consensus 385 ~~~~~~~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 439 (693)
.+...|+.++-..+...|+... .+........++.+-.+.++.......+..-..
T Consensus 535 ~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~ 614 (895)
T KOG2076|consen 535 ILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRA 614 (895)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhh
Confidence 6667777776555444444211 111222222333333333332222111111100
Q ss_pred ----CCChh----hHHHHHHHHHhcCChHHHHHHHHHhhhCC---CCCH---HHHHHHHHHhcccCChHHHHHHHHHHHH
Q 043637 440 ----RRDKV----SWNAVLTGYARRGQSEEAMTSFSEMQWET---RPSK---FTFETLLAACANISSLEQGKQIHCFVIR 505 (693)
Q Consensus 440 ----~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 505 (693)
.-... .+.-++..+++.+++++|+.+...+.... .++. ..-...+.++...+++..|...++.|+.
T Consensus 615 ~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~ 694 (895)
T KOG2076|consen 615 VELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVIT 694 (895)
T ss_pred hhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 00111 23456778899999999999998886655 3333 2234456677888999999999988887
Q ss_pred h-CCCc---chhHHHHHHHHHHhhCCHHHHHHHHhcCC--CCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 043637 506 N-CYEI---NVVCRGALVEVYTKCCCLEYAIRVFKESS--SLD--VIICNSMILGFCHNERGREALEVFGLMKKEGIKPD 577 (693)
Q Consensus 506 ~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 577 (693)
. +... -...|+.......+.++---=.+++.... .++ ...+.....-....+.+..|+..+-+... ..||
T Consensus 695 ~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~pd 772 (895)
T KOG2076|consen 695 QFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--QNPD 772 (895)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH--hCCC
Confidence 4 2211 23445544444444444333333333322 222 22233333344566778888888777766 5677
Q ss_pred hHHHHHHH-HHHh----------ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC--
Q 043637 578 HITFHGIL-LACI----------HEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNP-- 644 (693)
Q Consensus 578 ~~~~~~l~-~~~~----------~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 644 (693)
....+..+ -++. ++-..-++..++.+..+-....-....+..++++|-..|-..-|..++++....+
T Consensus 773 ~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~ 852 (895)
T KOG2076|consen 773 SPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPK 852 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcc
Confidence 54444333 2221 1122345556665554321222245677888999999999999999999875221
Q ss_pred --------CH----HhHHHHHHHHHhcCCccHHHHHHHHHh
Q 043637 645 --------TV----PMLRKIFDKCRKNGYATLGEWAARRLN 673 (693)
Q Consensus 645 --------~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 673 (693)
+- .....+.-.|.++|+...|.+++++-.
T Consensus 853 ~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~kyl 893 (895)
T KOG2076|consen 853 DVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKYL 893 (895)
T ss_pred ccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhhc
Confidence 11 123346677888999999999887643
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=5.1e-16 Score=142.23 Aligned_cols=327 Identities=11% Similarity=0.037 Sum_probs=204.6
Q ss_pred hhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHh---ccCChhhHHHhhccC---------------
Q 043637 42 YSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYG---KCGNLDDARGLFDEM--------------- 103 (693)
Q Consensus 42 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~--------------- 103 (693)
+.+=+.|+. ...+|.+.++.-+|++|...|.+.+..+...|.+..+ ..+-.-.-++.|-.|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 344455555 3456889999999999999999888887766655433 222111222333223
Q ss_pred --------CCCCcccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCC
Q 043637 104 --------PERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFC 175 (693)
Q Consensus 104 --------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 175 (693)
...+..+|..||.++++--..++|.++|++.....++.+..+||.+|.+..-..+ .+++.+|....+.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcC
Confidence 2234556777777777777777777777777766667777777777765543222 5666677776677
Q ss_pred CchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhc
Q 043637 176 GNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACS 255 (693)
Q Consensus 176 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 255 (693)
||..|+|+++++..+.|+++.|.+ .|++++.+|++.|+.|...+|..+|..++
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~ 323 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFK 323 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhc
Confidence 777777777766666666665543 36778899999999999999999999998
Q ss_pred CCCCcch-hHHHHHHHHHh--c--CC----CchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCH
Q 043637 256 FLSSPYE-GMQIHGVIIKI--D--FE----GDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRI 326 (693)
Q Consensus 256 ~~~~~~~-a~~~~~~~~~~--g--~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~ 326 (693)
+.++... +..++.++... | +. .|...+...+..|.+..+.+.|.++-.-. +.|+-
T Consensus 324 re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll----------------~tg~N 387 (625)
T KOG4422|consen 324 RESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLL----------------KTGDN 387 (625)
T ss_pred ccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHH----------------HcCCc
Confidence 8887755 33333333322 2 11 23344555556666666665443332111 11100
Q ss_pred HHHHHHHhhCCC--CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHH
Q 043637 327 REARELFNEMPE--RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHR 404 (693)
Q Consensus 327 ~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 404 (693)
. ..|.. ....-|..+....++....+..+.+|+.|...-+-|+..+...++++....+.++-..++|.+++.
T Consensus 388 ~------~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~ 461 (625)
T KOG4422|consen 388 W------KFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE 461 (625)
T ss_pred h------hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH
Confidence 0 00000 112345566667777777788888888888777778888888888888888888888888888877
Q ss_pred hCCCCchhHHHHHHHHHH
Q 043637 405 NDYSSNIFVSNALLDMYR 422 (693)
Q Consensus 405 ~~~~~~~~~~~~l~~~~~ 422 (693)
.|...+.....-++..++
T Consensus 462 ~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 462 YGHTFRSDLREEILMLLA 479 (625)
T ss_pred hhhhhhHHHHHHHHHHHh
Confidence 775554444443433333
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=1.7e-15 Score=138.80 Aligned_cols=442 Identities=11% Similarity=0.033 Sum_probs=295.9
Q ss_pred cccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHH---HHHHHHHHHhCCCCchhhHhHH
Q 043637 108 GGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVS---KQLHGLIVKRGFCGNVILESSL 184 (693)
Q Consensus 108 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a---~~~~~~~~~~g~~~~~~~~~~l 184 (693)
+.+-|.|+. ...+|.++++.-+|+.|+..|+..+...-..|++..+-.+.-+-- ++.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 345566654 456789999999999999999999988877777766544332222 23333444444 2222232
Q ss_pred HHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhH
Q 043637 185 VDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGM 264 (693)
Q Consensus 185 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 264 (693)
+.|+..+ ++-+....+..+|..||.++|+-...+.|.+++++-.....+.+..+||.+|.+-+-..+ +
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 4555544 666666678889999999999999999999999999988889999999999988654433 8
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccH
Q 043637 265 QIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVISW 344 (693)
Q Consensus 265 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 344 (693)
+++.+|......||..|+|+++.+..+.|+++.|.
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar--------------------------------------------- 293 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDAR--------------------------------------------- 293 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHH---------------------------------------------
Confidence 89999999999999999999999999999888332
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhh-HHHHHHHHHH----hCCCC----chhHHH
Q 043637 345 NAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKM-GKEVHGFIHR----NDYSS----NIFVSN 415 (693)
Q Consensus 345 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~~ 415 (693)
..|++++.+|++.|+.|...+|..+|..+++.++..+ +.....++.. ..++| +...+.
T Consensus 294 -------------~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 294 -------------KAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred -------------HHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 2456666777777777777777777777766666543 2222333321 22222 344455
Q ss_pred HHHHHHHHcCChHHHHHHHHhhcCC--------C---ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCHHHHHHH
Q 043637 416 ALLDMYRKCGNLRSARIWFYQMSQR--------R---DKVSWNAVLTGYARRGQSEEAMTSFSEMQWET-RPSKFTFETL 483 (693)
Q Consensus 416 ~l~~~~~~~~~~~~a~~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~~~~~~~l 483 (693)
.-+..+.+..+.+-|. .+...... + ...-|..+....|+....+.-+..|+.|...- -|+..+...+
T Consensus 361 ~AM~Ic~~l~d~~LA~-~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAY-QVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHhhhHHHHH-HHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 5566666777777773 33333321 1 12235667778888888999999999998887 9999999999
Q ss_pred HHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC-CCCHH---HHHHHHHHHHhCCCh
Q 043637 484 LAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS-SLDVI---ICNSMILGFCHNERG 559 (693)
Q Consensus 484 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~---~~~~l~~~~~~~g~~ 559 (693)
+++....+.++-..++|..++..|.........-+...++ ... .|+.. -+.....-|.. .-.
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~-------------~~k~hp~tp~r~Ql~~~~ak~aa-d~~ 505 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA-------------RDKLHPLTPEREQLQVAFAKCAA-DIK 505 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh-------------cCCCCCCChHHHHHHHHHHHHHH-HHH
Confidence 9999999999999999999998776544333322222222 222 23222 12222221111 112
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH---HHHHHHHhcCChHHHHHH
Q 043637 560 REALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYE---CMIKLYCRYGYMKELEDF 636 (693)
Q Consensus 560 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~ 636 (693)
+.....-.+|.+..+. ....+..+-.+.+.|..++|.+++..+..+..--|-....+ .+++.-.+....-.|...
T Consensus 506 e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~ 583 (625)
T KOG4422|consen 506 EAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEV 583 (625)
T ss_pred HHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 2223334455554333 44556666677889999999999998865444444444445 455666778888888888
Q ss_pred HHhCC
Q 043637 637 VNRMP 641 (693)
Q Consensus 637 ~~~~~ 641 (693)
++-|.
T Consensus 584 lQ~a~ 588 (625)
T KOG4422|consen 584 LQLAS 588 (625)
T ss_pred HHHHH
Confidence 88775
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=3.1e-16 Score=167.12 Aligned_cols=247 Identities=10% Similarity=-0.066 Sum_probs=186.2
Q ss_pred cchhhHHHHHHHHHHhC-C-CCchhHHHHHHHHHHHcCChHHHHHHHHhhcC-CC-ChhhHHHHHHHHHhcCChHHHHHH
Q 043637 390 SEIKMGKEVHGFIHRND-Y-SSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ-RR-DKVSWNAVLTGYARRGQSEEAMTS 465 (693)
Q Consensus 390 ~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~ 465 (693)
+++++|.+.++...+.+ . +.....+..+..++...|++++|+..+.+.+. .| ....|..+...+...|++++|...
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45666666666666543 1 22345566777778888888888888888776 34 345677788888888999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCC
Q 043637 466 FSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLD 542 (693)
Q Consensus 466 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~ 542 (693)
|++.....+.+...+..+...+...|++++|...+++..+.... +...+..+..++.+.|++++|+..+++.. +.+
T Consensus 388 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~ 466 (615)
T TIGR00990 388 FDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA 466 (615)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 98887766666778888888888899999999999988876543 45667778888889999999999998765 456
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HH-------HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh
Q 043637 543 VIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-IT-------FHGILLACIHEGNVKLALQFFDSMRCKYGIIPQL 614 (693)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 614 (693)
...|+.+...+...|++++|++.|++..+ +.|+. .. ++..+..+...|++++|.+++++..+ ..+.+.
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~ 542 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--IDPECD 542 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 77888999999999999999999999888 44532 11 11112233346899999999999874 223334
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 615 EHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
..+..++..+.+.|++++|+..|++..
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 568889999999999999999998874
No 26
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.80 E-value=3.5e-16 Score=156.02 Aligned_cols=483 Identities=12% Similarity=0.041 Sum_probs=300.2
Q ss_pred HhhhccCCCCCChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCCCcc
Q 043637 30 ISGHLKSDEPVSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGG 109 (693)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 109 (693)
+..+...|+.|+..+|.+++..|+..|+.+.|- +|.-|.-...+.+..+++.++..-..+|+.+.+. +|...
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aD 84 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLAD 84 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchh
Confidence 344557899999999999999999999999999 9999988888888899999999988888888776 78889
Q ss_pred cHHHHHHHHHhCCChhh---HHHHHHHh----hhCCCCCCHhhHHHHHHHhhcc-CC------hHHHHHHHHHHHHhCC-
Q 043637 110 SWNAMLGAYTQNGFPGR---TLELFLDM----NHSGVSANQITYANVLRSSAEE-LE------LGVSKQLHGLIVKRGF- 174 (693)
Q Consensus 110 ~~~~li~~~~~~~~~~~---a~~~~~~m----~~~g~~~~~~~~~~ll~~~~~~-~~------~~~a~~~~~~~~~~g~- 174 (693)
+|..|..+|..+|+... ..+.+... ...|+.....-+-..+.+|-.. .+ ..--+.+++...+.+.
T Consensus 85 tyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~ 164 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAK 164 (1088)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998754 22212222 2233332222222222211110 00 0111223333333331
Q ss_pred CCchhhHhH---HHHHhhc-CCCHHHHHHHHhccCC-CCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHH
Q 043637 175 CGNVILESS---LVDAYGK-CMVMTDARRMFDDIQN-KNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFAN 249 (693)
Q Consensus 175 ~~~~~~~~~---l~~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 249 (693)
.|...-++. .+.-... ...+++-..+.....+ +++.+|..++..-..+|+.+.|..++.+|++.|+..+..-|..
T Consensus 165 ~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwp 244 (1088)
T KOG4318|consen 165 VPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWP 244 (1088)
T ss_pred CCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchh
Confidence 121111111 1222222 2345555555555554 8999999999999999999999999999999999999888888
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhc------------------------CC
Q 043637 250 ALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLD------------------------QP 305 (693)
Q Consensus 250 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~------------------------~~ 305 (693)
++-+ .++...+..++..|.+.|+.|+..|+..-+..+.++|....+....+ +-
T Consensus 245 Ll~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~n 321 (1088)
T KOG4318|consen 245 LLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQN 321 (1088)
T ss_pred hhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHH
Confidence 8766 78888899999999999999999999887776666555433222111 00
Q ss_pred C---------C-------CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC-------CCcccHHHHHHHHHhCC-------
Q 043637 306 D---------E-------RNIISWTSIVSGYAISGRIREARELFNEMPE-------RNVISWNAMLAGYTRSL------- 355 (693)
Q Consensus 306 ~---------~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~------- 355 (693)
. + ....+|. ++.-...+|+-++...+...+.. .++..|..++.-|.+.-
T Consensus 322 l~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~ 400 (1088)
T KOG4318|consen 322 LRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSR 400 (1088)
T ss_pred HHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHH
Confidence 0 0 0001122 12222336777777777666654 23344544444433221
Q ss_pred ---------------CHHHHHHHHHHHHHcCCCCCH----------------------------hhHHHHHHHHhcccch
Q 043637 356 ---------------LWKEALDFVFLMRKTTKDIDQ----------------------------VTLGLILNVCAGLSEI 392 (693)
Q Consensus 356 ---------------~~~~a~~~~~~m~~~~~~p~~----------------------------~~~~~ll~~~~~~~~~ 392 (693)
...+..+..... .|+. ..-+.++..|++..+.
T Consensus 401 i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~ 475 (1088)
T KOG4318|consen 401 IYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNK 475 (1088)
T ss_pred HHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 111222222211 1211 1122334444444444
Q ss_pred hhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCC-----ChhhHHHHHHHHHhcCChHHHHHHHH
Q 043637 393 KMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRR-----DKVSWNAVLTGYARRGQSEEAMTSFS 467 (693)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~ 467 (693)
..+...-+.....-++ ..|..||+.++...+.+.|.....+..... +..-+..+...+.+.+....+..++.
T Consensus 476 lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~ 552 (1088)
T KOG4318|consen 476 LKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILY 552 (1088)
T ss_pred HHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHh
Confidence 4444333333222222 568888998888889999966666655432 44457788888999999999999999
Q ss_pred HhhhCC--CC-CHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHh
Q 043637 468 EMQWET--RP-SKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFK 536 (693)
Q Consensus 468 ~~~~~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 536 (693)
++.+.- .| ...++..+++.....|+.+...+.++-+...|+..+ ..++....+.++...|.+..+
T Consensus 553 e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e 620 (1088)
T KOG4318|consen 553 EDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPE 620 (1088)
T ss_pred hhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcch
Confidence 997754 33 356677788888888999999998888888776542 223333444455555544443
No 27
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=8.6e-16 Score=162.87 Aligned_cols=316 Identities=9% Similarity=-0.074 Sum_probs=198.2
Q ss_pred HHHHHHHHcCChhHHHhhhcCCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CcccHHHHHHHHHhCCCH
Q 043637 284 SLTEMYVKCGRLEDARGLLDQPDE---RNIISWTSIVSGYAISGRIREARELFNEMPE--R-NVISWNAMLAGYTRSLLW 357 (693)
Q Consensus 284 ~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~ 357 (693)
.++..+.+.|++++|..+++.... .+...+..++.+....|+.++|...|+.+.+ | +...+..+...+...|++
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 345556667777777777766543 2344555566666667777777777777665 2 334566666677777777
Q ss_pred HHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHh
Q 043637 358 KEALDFVFLMRKTTKDID-QVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQ 436 (693)
Q Consensus 358 ~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 436 (693)
++|...+++..+. .|+ ...+..+...+...|+.++|...++.+...... +...+..+ ..+...|++++|...+..
T Consensus 127 ~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 127 ATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 7777777777653 333 445555666677777777777777766554322 22222222 235667777777666666
Q ss_pred hcCC-C--ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHH----HHHHHHHHHHhCCC
Q 043637 437 MSQR-R--DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQ----GKQIHCFVIRNCYE 509 (693)
Q Consensus 437 ~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~ 509 (693)
.+.. | +...+..+...+...|++++|+..+++.....+.+...+..+...+...|++++ |...++++.+..+.
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~ 282 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD 282 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence 5543 1 222333445566677777777777777766555556666667777777777764 66777776665433
Q ss_pred cchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHH-HHHHH
Q 043637 510 INVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHIT-FHGIL 585 (693)
Q Consensus 510 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l~ 585 (693)
+...+..+...+...|++++|...+++.. +.+...+..+..++...|++++|...++++.+ ..|+... +..+.
T Consensus 283 -~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~--~~P~~~~~~~~~a 359 (656)
T PRK15174 283 -NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAR--EKGVTSKWNRYAA 359 (656)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccchHHHHHHH
Confidence 55666677777777777777777777655 33445666667777777777777777777776 3555433 33344
Q ss_pred HHHhccCcHHHHHHHHHHhHH
Q 043637 586 LACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 586 ~~~~~~g~~~~A~~~~~~~~~ 606 (693)
.++...|++++|...++++.+
T Consensus 360 ~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 566777777777777777664
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=4.2e-15 Score=157.68 Aligned_cols=439 Identities=10% Similarity=0.005 Sum_probs=248.8
Q ss_pred HHHHHhcCCchHHHHHHHHHHHCCCCCCHH-hHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCC
Q 043637 216 VRRYLVAGNGKEAVVMFFKMLREDIRPLNF-TFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGR 294 (693)
Q Consensus 216 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 294 (693)
+-...+.|+++.|+..|++..+. .|+.. ....++..+...|+.++|...++... ............+...+...|+
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCC
Confidence 34456788888888888888764 34431 11155555555566666666666555 1111122222223445555566
Q ss_pred hhHHHhhhcCCCCC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcccHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043637 295 LEDARGLLDQPDER---NIISWTSIVSGYAISGRIREARELFNEMPE--RNVISWNAMLAGYTRSLLWKEALDFVFLMRK 369 (693)
Q Consensus 295 ~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 369 (693)
+++|+.+|+++.+. +...+..++..+...++.++|++.++.+.. |+...+..++..+...++..+|++.++++.+
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 66666655554431 233444445555555555555555555554 2222222222222223334345555555554
Q ss_pred cCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHH
Q 043637 370 TTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAV 449 (693)
Q Consensus 370 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l 449 (693)
.. +-+...+..++.++.+.|-...|.++... .|+..+-...... ..+.+.+.+......+.
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~------- 258 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLPTR------- 258 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhcccccc-------
Confidence 32 11233333444444444444444433222 1111100000000 00000011100000000
Q ss_pred HHHHHhcCC---hHHHHHHHHHhhhCC--CCCH-H----HHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHH
Q 043637 450 LTGYARRGQ---SEEAMTSFSEMQWET--RPSK-F----TFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALV 519 (693)
Q Consensus 450 ~~~~~~~~~---~~~a~~~~~~~~~~~--~p~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 519 (693)
....+ .+.|+.-++.+...- .|.. . ...-.+-++...++..++.+.++.+...+.+....+-..+.
T Consensus 259 ----~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 259 ----SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred ----cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 00111 234555555544322 2321 1 22234556677788888888888888877766667778888
Q ss_pred HHHHhhCCHHHHHHHHhcCCC---------CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC-------------CCCC
Q 043637 520 EVYTKCCCLEYAIRVFKESSS---------LDVIICNSMILGFCHNERGREALEVFGLMKKEG-------------IKPD 577 (693)
Q Consensus 520 ~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~ 577 (693)
++|...++.++|+.+++.+.. ++......|..++...+++++|..+++++.+.- -.||
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 888888888888888887642 123335678888888889999999888888721 1122
Q ss_pred hHH-HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHH
Q 043637 578 HIT-FHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFD 654 (693)
Q Consensus 578 ~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 654 (693)
-.. +..++..+...|+..+|.+.++++.. .-+-|......+...+...|++.+|+..++... .+.+.......+.
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~ 492 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAE 492 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHH
Confidence 222 33445778889999999999999974 556678888888999999999999999997764 3444556667777
Q ss_pred HHHhcCCccHHHHHHHHHhhcCCCCCcc
Q 043637 655 KCRKNGYATLGEWAARRLNELNPWAPFQ 682 (693)
Q Consensus 655 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 682 (693)
++...|++.+|....+.+++..|+++.+
T Consensus 493 ~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 8888899999999999999999988754
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=4.4e-14 Score=150.03 Aligned_cols=454 Identities=9% Similarity=-0.042 Sum_probs=225.1
Q ss_pred ChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccHH-HH--HHH
Q 043637 41 SYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWN-AM--LGA 117 (693)
Q Consensus 41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~l--i~~ 117 (693)
.+.+...-+-...+.|++..|...+++..+..+...+.++ .++..+...|+.++|+..+++...|+...+. .+ ...
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~l 111 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARA 111 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 3344444444566778888888888888877654333344 6777777778888888888887766444333 33 345
Q ss_pred HHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHH
Q 043637 118 YTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDA 197 (693)
Q Consensus 118 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 197 (693)
+...|++++|+++|+++.+.. +-+...+. .++..+...++.++|
T Consensus 112 y~~~gdyd~Aiely~kaL~~d-P~n~~~l~-----------------------------------gLa~~y~~~~q~~eA 155 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKD-PTNPDLIS-----------------------------------GMIMTQADAGRGGVV 155 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHH-----------------------------------HHHHHHhhcCCHHHH
Confidence 667788888888888877653 22233333 334444455555555
Q ss_pred HHHHhccCCCCc--ccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-HHhHHHHHHHhcCCCCcchhHHHHHHHHHhc
Q 043637 198 RRMFDDIQNKNA--VSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPL-NFTFANALFACSFLSSPYEGMQIHGVIIKID 274 (693)
Q Consensus 198 ~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 274 (693)
++.++.+.+.+. ..+-.++..+...++..+|++.++++.+. .|+ ...+..+..++.+.|-...|.++...
T Consensus 156 l~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~----- 228 (822)
T PRK14574 156 LKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKE----- 228 (822)
T ss_pred HHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh-----
Confidence 555555543222 22222222222345555577777777764 343 22333334444444433333333222
Q ss_pred CCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhC
Q 043637 275 FEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRS 354 (693)
Q Consensus 275 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 354 (693)
.|+.++-..... + ..+.|.+..+....++..- -. +-
T Consensus 229 -~p~~f~~~~~~~----------------------------l--------~~~~~a~~vr~a~~~~~~~----~~---r~ 264 (822)
T PRK14574 229 -NPNLVSAEHYRQ----------------------------L--------ERDAAAEQVRMAVLPTRSE----TE---RF 264 (822)
T ss_pred -CccccCHHHHHH----------------------------H--------HHHHHHHHHhhcccccccc----hh---hH
Confidence 111110000000 0 0002222221111110000 00 00
Q ss_pred CCHHHHHHHHHHHHHc-CCCCCH-hhH----HHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChH
Q 043637 355 LLWKEALDFVFLMRKT-TKDIDQ-VTL----GLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLR 428 (693)
Q Consensus 355 ~~~~~a~~~~~~m~~~-~~~p~~-~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 428 (693)
--.+.|+.-++.+... +..|.. ..| .-.+.++...++..++.+.++.+...+.+....+...+.++|...+..+
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 0134455555554431 111221 111 1233455666777777777777776666555556667777777777777
Q ss_pred HHHHHHHhhcCCC--------ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC-HHHHHHHHHHhcccCChHHHHHH
Q 043637 429 SARIWFYQMSQRR--------DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPS-KFTFETLLAACANISSLEQGKQI 499 (693)
Q Consensus 429 ~a~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~ 499 (693)
+|+.++.+..... +......|..++...+++++|..+++++... .|. ...|. ..
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~-~p~~~~~~~-------~~--------- 407 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ-TPYQVGVYG-------LP--------- 407 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc-CCcEEeccC-------CC---------
Confidence 7766666654421 1222345666666777777777777766542 110 00000 00
Q ss_pred HHHHHHhCCCcch-hHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 043637 500 HCFVIRNCYEINV-VCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIK 575 (693)
Q Consensus 500 ~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 575 (693)
.....|+- ..+..++..+...|++.+|++.++++. +-|......+...+...|++.+|++.++.... +.
T Consensus 408 -----~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~ 480 (822)
T PRK14574 408 -----GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES--LA 480 (822)
T ss_pred -----CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hC
Confidence 00011111 112223344445555555555555544 44555555566666666666666666655444 34
Q ss_pred CC-hHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 576 PD-HITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 576 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
|+ ..+......++...+++.+|..+.+.+.+
T Consensus 481 P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 481 PRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 53 24444555555566666666666655553
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=2.3e-12 Score=124.96 Aligned_cols=606 Identities=10% Similarity=-0.019 Sum_probs=370.0
Q ss_pred CccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCC---CcccHHHHHHHHHhCCChhhHHHHH
Q 043637 55 SKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPER---DGGSWNAMLGAYTQNGFPGRTLELF 131 (693)
Q Consensus 55 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~ 131 (693)
.+++..|+-++....+.++. ++..|.+-.+.=-..|++..|..+..+--+. +...|--.+ +-...+.|..+.
T Consensus 264 l~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vv 338 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHH
Confidence 45778888999999988863 4444544444445668888888877654332 222332222 223344455555
Q ss_pred HHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCccc
Q 043637 132 LDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVS 211 (693)
Q Consensus 132 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 211 (693)
-...+. ++.++..|.- +---..+...-.++++...+. ++.++..|-..+ .....+.|..++.+..+--..+
T Consensus 339 A~Avr~-~P~Sv~lW~k---A~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaAV----elE~~~darilL~rAveccp~s 409 (913)
T KOG0495|consen 339 ANAVRF-LPTSVRLWLK---AADLESDTKNKKRVLRKALEH-IPRSVRLWKAAV----ELEEPEDARILLERAVECCPQS 409 (913)
T ss_pred HHHHHh-CCCChhhhhh---HHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHHH----hccChHHHHHHHHHHHHhccch
Confidence 444443 1222222221 111122222233444444443 233444443332 3344455666665554311111
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHH----HHhcCCCchHHHHHHHH
Q 043637 212 WNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVI----IKIDFEGDDVVLGSLTE 287 (693)
Q Consensus 212 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~l~~ 287 (693)
..|.-++++..-++.|..++...++. ++-+...|.+....--..|+.+....+++.- ...|+..+..-|-.=..
T Consensus 410 -~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe 487 (913)
T KOG0495|consen 410 -MDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAE 487 (913)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHH
Confidence 11223344455566666666666553 4445556655555555666666665555432 33466666666666666
Q ss_pred HHHHcCChhHHHhhhcCCCC------CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCHH
Q 043637 288 MYVKCGRLEDARGLLDQPDE------RNIISWTSIVSGYAISGRIREARELFNEMPE---RNVISWNAMLAGYTRSLLWK 358 (693)
Q Consensus 288 ~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 358 (693)
.+-..|..-.+..+...... .-..+|..-...|.+.+.++-|..+|....+ .+...|......--..|..+
T Consensus 488 ~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 488 ACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred HHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHH
Confidence 66666665555544443221 1224666666666677777777777766655 23445555555555567777
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhc
Q 043637 359 EALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMS 438 (693)
Q Consensus 359 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 438 (693)
+...+|.+....- +-....+.......-..|++..+..++....+.. +.+..++-.-+........++.|..++.+..
T Consensus 568 sl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 568 SLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 7777777776542 2223333334444555677777777777776654 3366677777777777777888866666655
Q ss_pred C-CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHH
Q 043637 439 Q-RRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGA 517 (693)
Q Consensus 439 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 517 (693)
. .|....|..-+...--.++.++|++++++..+..+.-...|..+.+.+...++.+.|...|..-.+..+ -.+..|-.
T Consensus 646 ~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP-~~ipLWll 724 (913)
T KOG0495|consen 646 SISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCP-NSIPLWLL 724 (913)
T ss_pred ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCC-CCchHHHH
Confidence 4 355566666666666677778888888777666555556667777777777777777776655444322 24566777
Q ss_pred HHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcH
Q 043637 518 LVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNV 594 (693)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 594 (693)
|...-.+.|.+-.|..++++.. +.+...|-..|+.-.+.|+.+.|..+..+.++. ++.+...|.--|...-+.++-
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rk 803 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRK 803 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccc
Confidence 7777778888888888888766 556778888888888999999988888887774 444556777777777777765
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHH
Q 043637 595 KLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRL 672 (693)
Q Consensus 595 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 672 (693)
......++ .+.-|+++.-.+.+.+....++++|.++|++.. .+..-.+|-.+...+..+|.-+.-.+++.+.
T Consensus 804 Tks~DALk------kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 804 TKSIDALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred hHHHHHHH------hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 55555444 345577777888888888889999999998875 2333456666778888889888888899988
Q ss_pred hhcCCCCCcchhhh
Q 043637 673 NELNPWAPFQFKIT 686 (693)
Q Consensus 673 ~~~~p~~~~~~~~l 686 (693)
..-+|.+..-+...
T Consensus 878 ~~~EP~hG~~W~av 891 (913)
T KOG0495|consen 878 ETAEPTHGELWQAV 891 (913)
T ss_pred hccCCCCCcHHHHH
Confidence 88888766555443
No 31
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=3.6e-14 Score=154.04 Aligned_cols=106 Identities=10% Similarity=-0.061 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHh
Q 043637 514 CRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACI 589 (693)
Q Consensus 514 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~ 589 (693)
.+..+...+...|++++|++.++++. +.+...+..++..+...|++++|++.+++..+ +.|+. ..+......+.
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHH
Confidence 34455666677777777777777655 45666778888888888888888888888888 56764 55556667788
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 043637 590 HEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLY 624 (693)
Q Consensus 590 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 624 (693)
..|++++|..+++++++. .|+......+-+.+
T Consensus 439 ~~~~~~~A~~~~~~ll~~---~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVAR---EPQDPGVQRLARAR 470 (765)
T ss_pred HhCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 888888888888888753 44444433443333
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.76 E-value=3.9e-12 Score=123.40 Aligned_cols=568 Identities=10% Similarity=0.011 Sum_probs=412.3
Q ss_pred CChhhHHHhhccCCCCC---cccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHH
Q 043637 91 GNLDDARGLFDEMPERD---GGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHG 167 (693)
Q Consensus 91 g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 167 (693)
+++.+|+.++..+.+.| +..|-+-.+.--..|++.-|..+...=.+. ++-+...|...+ +....+.|..+..
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHHHH
Confidence 57788999999887654 445665555555677888887777655444 355666665544 4455666777777
Q ss_pred HHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCC--C-CcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH
Q 043637 168 LIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQN--K-NAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLN 244 (693)
Q Consensus 168 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 244 (693)
...+.- +.++..|-.....= .+...-.+++....+ | ++..|-. .....+.+.|..++.+..+- -|.+
T Consensus 340 ~Avr~~-P~Sv~lW~kA~dLE---~~~~~K~RVlRKALe~iP~sv~LWKa----AVelE~~~darilL~rAvec--cp~s 409 (913)
T KOG0495|consen 340 NAVRFL-PTSVRLWLKAADLE---SDTKNKKRVLRKALEHIPRSVRLWKA----AVELEEPEDARILLERAVEC--CPQS 409 (913)
T ss_pred HHHHhC-CCChhhhhhHHhhh---hHHHHHHHHHHHHHHhCCchHHHHHH----HHhccChHHHHHHHHHHHHh--ccch
Confidence 776653 33344433322211 122222344544443 2 3334543 34456777788888888763 3433
Q ss_pred HhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCC--------CCchhHHHH
Q 043637 245 FTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDE--------RNIISWTSI 316 (693)
Q Consensus 245 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l 316 (693)
. -|.-++++...++.|..++....+. ++.+..+|.+-...--.+|+.+...+++++... -+...|-.=
T Consensus 410 ~---dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e 485 (913)
T KOG0495|consen 410 M---DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE 485 (913)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH
Confidence 2 2344566667788899998887665 566778888877777889999999888875332 133345444
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC------CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHhcc
Q 043637 317 VSGYAISGRIREARELFNEMPE------RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDI-DQVTLGLILNVCAGL 389 (693)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~ 389 (693)
...+-..|..--+..+...... .--.||+.-...|.+.+.++-|..+|....+- -| +...+......--..
T Consensus 486 Ae~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~h 563 (913)
T KOG0495|consen 486 AEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSH 563 (913)
T ss_pred HHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhc
Confidence 5555556665555555555443 33467888888999999999999999887763 34 344454444444567
Q ss_pred cchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC-CC-ChhhHHHHHHHHHhcCChHHHHHHHH
Q 043637 390 SEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ-RR-DKVSWNAVLTGYARRGQSEEAMTSFS 467 (693)
Q Consensus 390 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 467 (693)
|..+....++......- +.....+......+-..|++..|..++..... .| +...|-.-+........+++|..+|.
T Consensus 564 gt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred CcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence 88888889998888763 44555667777788889999999888877766 34 55688888899999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHH
Q 043637 468 EMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVI 544 (693)
Q Consensus 468 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~ 544 (693)
+.... .|+...|.--+...-..++.++|.+++++..+.-.. -...|-.+.+.+.+.++++.|...|.... +..+.
T Consensus 643 kar~~-sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip 720 (913)
T KOG0495|consen 643 KARSI-SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP 720 (913)
T ss_pred HHhcc-CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch
Confidence 98765 555556655555556678999999999998885433 45678888899999999999999998876 55677
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKL 623 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 623 (693)
.|-.+...--+.|+.-+|..++++..-. .| +...|...|+.-.+.|..+.|..+..++.+ .++.+...|..-|..
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWL 796 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHh
Confidence 8888888888999999999999998884 46 568899999999999999999999999986 677788889999999
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhh
Q 043637 624 YCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTN 688 (693)
Q Consensus 624 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 688 (693)
.-+.++...+.+.+++... |+-.+-.+...+.....+++|...|++.++.+|++.+++..+-.
T Consensus 797 e~~~~rkTks~DALkkce~--dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fyk 859 (913)
T KOG0495|consen 797 EPRPQRKTKSIDALKKCEH--DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYK 859 (913)
T ss_pred ccCcccchHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHH
Confidence 9999999999999998863 44455567788888888999999999999999999888765433
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=7.2e-13 Score=133.64 Aligned_cols=546 Identities=11% Similarity=0.058 Sum_probs=358.0
Q ss_pred HhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhcc---CCCCcccHHHHHHHH
Q 043637 143 QITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDI---QNKNAVSWNVIVRRY 219 (693)
Q Consensus 143 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~ 219 (693)
........+.+...|+.+.|..++.++++.. +.+...|..|...|-..|+.+++...+--. ...|...|..+....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3444444455555699999999999999886 557788899999999999999987765333 345667788888888
Q ss_pred HhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHH----HHHHHHHHcCCh
Q 043637 220 LVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLG----SLTEMYVKCGRL 295 (693)
Q Consensus 220 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~l~~~~~~~g~~ 295 (693)
.+.|++++|.-.|.+..+.. +++...+.--...|-+.|+...|...+.++.....+.|..-.. ..+..+...++-
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999988753 2333344455667788899999999888888775533333222 345666777777
Q ss_pred hHHHhhhcCCCC-----CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC----CCcccH----------------------
Q 043637 296 EDARGLLDQPDE-----RNIISWTSIVSGYAISGRIREARELFNEMPE----RNVISW---------------------- 344 (693)
Q Consensus 296 ~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~---------------------- 344 (693)
+.|.+.++.... -+...++.++..+.+...++.|......+.. +|..-|
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 888888876554 2445788888888888888888777766543 322211
Q ss_pred H----HHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHH
Q 043637 345 N----AMLAGYTRSLLWKEALDFVFLMRKTTKDI--DQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALL 418 (693)
Q Consensus 345 ~----~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 418 (693)
. -+.-++...+..+....+...+.+..+.| +...|.-+..++...|.+..|..++..+.....-.+..+|-.+.
T Consensus 377 ~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 377 DLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred cchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 1 12223344444444444555555555333 45667788888889999999999999888776666788888899
Q ss_pred HHHHHcCChHHHHHHHHhhcC-CC-ChhhHHHHHHHHHhcCChHHHHHHHHHhhh--------CC-CCCHHHHHHHHHHh
Q 043637 419 DMYRKCGNLRSARIWFYQMSQ-RR-DKVSWNAVLTGYARRGQSEEAMTSFSEMQW--------ET-RPSKFTFETLLAAC 487 (693)
Q Consensus 419 ~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~-~p~~~~~~~ll~~~ 487 (693)
.+|...|..+.|...+...+. .| +...-..|...+.+.|+.++|.++++.+.. .. .|...........+
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 999999999999888877766 34 555667777888889999999999888531 12 45555556666677
Q ss_pred cccCChHHHHHHHHHHHHhC-----CCcc-----------------hhHHHHHHHHHHhhCCHHHHHHHHhcC-------
Q 043637 488 ANISSLEQGKQIHCFVIRNC-----YEIN-----------------VVCRGALVEVYTKCCCLEYAIRVFKES------- 538 (693)
Q Consensus 488 ~~~~~~~~a~~~~~~~~~~~-----~~~~-----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~------- 538 (693)
...|+.++-..+...|+... +-|+ ....-.+..+-.+.++......-....
T Consensus 537 ~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e 616 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVE 616 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhh
Confidence 77888877666666555421 1110 111112222222222222111111111
Q ss_pred -CCCCH----HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChH---HH-HHHHHHHhccCcHHHHHHHHHHhHHhc
Q 043637 539 -SSLDV----IICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHI---TF-HGILLACIHEGNVKLALQFFDSMRCKY 608 (693)
Q Consensus 539 -~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~---~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~ 608 (693)
...+. ..+.-++.++++.+++++|+.+...+.+....- +.. .+ ...+.+++..+++..|...++.|...+
T Consensus 617 ~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~ 696 (895)
T KOG2076|consen 617 LRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQF 696 (895)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 01112 234567888999999999999999888754221 111 22 334478889999999999999998754
Q ss_pred CCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-C-HHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcc
Q 043637 609 GIIPQL---EHYECMIKLYCRYGYMKELEDFVNRMP-FNP-T-VPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQ 682 (693)
Q Consensus 609 ~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 682 (693)
+...++ ..|+.......+.|+-.--.+.+.... .++ + ++..-..+......+.+.-|...+-++...+|++|..
T Consensus 697 ~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~ 776 (895)
T KOG2076|consen 697 QFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLI 776 (895)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHH
Confidence 444332 234434444555555444444444332 222 2 3333333444556778899999999999999999988
Q ss_pred hhhhhhcc
Q 043637 683 FKITTNRF 690 (693)
Q Consensus 683 ~~~l~~~y 690 (693)
-..||-.|
T Consensus 777 nl~lglaf 784 (895)
T KOG2076|consen 777 NLCLGLAF 784 (895)
T ss_pred HHHHHHHH
Confidence 77776443
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.68 E-value=8.1e-13 Score=132.49 Aligned_cols=511 Identities=12% Similarity=0.034 Sum_probs=290.5
Q ss_pred HHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCCC
Q 043637 129 ELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKN 208 (693)
Q Consensus 129 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 208 (693)
.++-.+...|+.|+..||..+|..||..|+.+.|- +|..|.-...+.+...++.++.+....++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 56778888999999999999999999999999999 9999998888889999999999999999887766 788
Q ss_pred cccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHH-hcCCCchHHHHHHHH
Q 043637 209 AVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIK-IDFEGDDVVLGSLTE 287 (693)
Q Consensus 209 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~l~~ 287 (693)
..+|..|..+|.+.||... ++..++ ....+...++..|.......++..+.- -+.-||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8999999999999999866 222222 112223333334443333333333211 12233333 2333
Q ss_pred HHHHcCChhHHHhhhcCCCCC--CchhHHHHHHHHHh-cCCHHHHHHHHhhCCC-CCcccHHHHHHHHHhCCCHHHHHHH
Q 043637 288 MYVKCGRLEDARGLLDQPDER--NIISWTSIVSGYAI-SGRIREARELFNEMPE-RNVISWNAMLAGYTRSLLWKEALDF 363 (693)
Q Consensus 288 ~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 363 (693)
...-.|-++.+++++..++.. +. ....+++-+.. ...+++-........+ ++..+|..++.+-...|+.+.|..+
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~l 226 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNL 226 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHH
Confidence 445567777777777666541 11 11112333332 2234444444445555 8888899999988889999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHH-----------
Q 043637 364 VFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARI----------- 432 (693)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----------- 432 (693)
+.+|.+.|.+.+.+.|..++-+ .++...+..+.+.|.+.|+.|+..|+...+..+...|....+..
T Consensus 227 l~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAa 303 (1088)
T KOG4318|consen 227 LYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAA 303 (1088)
T ss_pred HHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHH
Confidence 9999999988888888888766 77888888888889999999998888877766666443222100
Q ss_pred HHHhhcCC---------------------C-------ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC----CCCHHHH
Q 043637 433 WFYQMSQR---------------------R-------DKVSWNAVLTGYARRGQSEEAMTSFSEMQWET----RPSKFTF 480 (693)
Q Consensus 433 ~~~~~~~~---------------------~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~p~~~~~ 480 (693)
+...+... + ...+|. +..-...+|+-++..++-..+..-. ..+...|
T Consensus 304 vrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~ 382 (1088)
T KOG4318|consen 304 VRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAF 382 (1088)
T ss_pred HHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHH
Confidence 00000000 0 001111 1111222344444444444442111 1122233
Q ss_pred HHHHHHhcccCChHHHHHHHH--HHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---------------CCCH
Q 043637 481 ETLLAACANISSLEQGKQIHC--FVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---------------SLDV 543 (693)
Q Consensus 481 ~~ll~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------------~~~~ 543 (693)
..++.-|.+.-.......++. ...+. ..+....-.+.+...+. +...+.+.+.... .+-.
T Consensus 383 ~~~lrqyFrr~e~~~~~~i~~~~qgls~--~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~ir 459 (1088)
T KOG4318|consen 383 GALLRQYFRRIERHICSRIYYAGQGLSL--NLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIR 459 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHh--hhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHH
Confidence 333333322211111111111 00000 00001111111111111 1111111111111 0111
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHH-hcCCCCChhHHHHHHH
Q 043637 544 IICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRC-KYGIIPQLEHYECMIK 622 (693)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~p~~~~~~~l~~ 622 (693)
..-+.++..|+..-+..+++..-++.... .-| ..|..||+-+....+.+.|..+.++... +..+..|...+..+.+
T Consensus 460 di~~ql~l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~d 536 (1088)
T KOG4318|consen 460 DIANQLHLTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQD 536 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHH
Confidence 23455666666666666665544444332 112 5677788888888888888888877753 1123345566777888
Q ss_pred HHHhcCChHHHHHHHHhCCC----CCC-HHhHHHHHHHHHhcCCccHHHHHHHHHh
Q 043637 623 LYCRYGYMKELEDFVNRMPF----NPT-VPMLRKIFDKCRKNGYATLGEWAARRLN 673 (693)
Q Consensus 623 ~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 673 (693)
.+.+.+....+..++.+++. .+. ......+++..+..|+.+.-.+..+-+.
T Consensus 537 LL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lv 592 (1088)
T KOG4318|consen 537 LLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILV 592 (1088)
T ss_pred HHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHH
Confidence 88888888888888887751 221 2234445555556665555544444433
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=4e-13 Score=124.36 Aligned_cols=202 Identities=10% Similarity=0.125 Sum_probs=121.2
Q ss_pred HcCChHHHHHHHHhhcCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHH
Q 043637 423 KCGNLRSARIWFYQMSQRRDK--VSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIH 500 (693)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 500 (693)
..|++++|.+.+.+.+..... .+.-.+.-.+-..|+.++|++.|-++..--..+...+..+.+.|....+...|.+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 346667776666666654322 122223334555667777777776654333455556666666666666666666666
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 043637 501 CFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD 577 (693)
Q Consensus 501 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 577 (693)
...... ++.|+.+.+.|.+.|-+.|+-..|.+.+-+.- +.+..+..=|..-|....-+++|+..|++..- +.|+
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~ 658 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPN 658 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCcc
Confidence 554432 33356666667777777777777666654332 45555555555556666666777777776655 6677
Q ss_pred hHHHHHHH-HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 043637 578 HITFHGIL-LACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGY 629 (693)
Q Consensus 578 ~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 629 (693)
..-|..++ .++.+.|++.+|.++++..-+ .++-|.....-|++.+...|.
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhccccc
Confidence 77776666 344556777777777777654 556666666666666665553
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=7.4e-13 Score=122.66 Aligned_cols=453 Identities=11% Similarity=0.047 Sum_probs=266.9
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHH-HHHHHhcCCCCcchhHHHHHHHHHhcCCCchH----HHHHHHHHH
Q 043637 215 IVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFA-NALFACSFLSSPYEGMQIHGVIIKIDFEGDDV----VLGSLTEMY 289 (693)
Q Consensus 215 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~l~~~~ 289 (693)
|..-|..+....+|+..|+-+.++...|+..... .+-+.+.+..++..|.+++...+..-...+.. +.+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 3344555556677777777777666666654322 22333445556666777766666553333322 333333456
Q ss_pred HHcCChhHHHhhhcCCCC--CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC----------------CCcccHHHHH---
Q 043637 290 VKCGRLEDARGLLDQPDE--RNIISWTSIVSGYAISGRIREARELFNEMPE----------------RNVISWNAML--- 348 (693)
Q Consensus 290 ~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~l~--- 348 (693)
.+.|+++.|+.-|+...+ |+..+--.|+-++..-|+.++..+.|.+|.. |+....+.-+
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 677777777777776544 4554444455555666777777777776653 1111111111
Q ss_pred --HHHHhCC--CHHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 043637 349 --AGYTRSL--LWKEALDFVFLMRKTTKDIDQV-TLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRK 423 (693)
Q Consensus 349 --~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 423 (693)
..+-+.+ +.++++-.--++..--+.|+-. .|...+...-.....+.| ...--.-...|.+
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la---------------~dlei~ka~~~lk 431 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELA---------------IDLEINKAGELLK 431 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhh---------------hhhhhhHHHHHHh
Confidence 1111111 1112221111222111222211 011111111111111111 1111112234677
Q ss_pred cCChHHHHHHHHhhcCCCChh---hHHHH--HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHH
Q 043637 424 CGNLRSARIWFYQMSQRRDKV---SWNAV--LTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQ 498 (693)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~~~~---~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 498 (693)
.|+++.|++++.-...+.+.. +-+.| +..+.--.++..|.+.-+.......-+......-.+.....|++++|.+
T Consensus 432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHH
Confidence 888888877666555432221 11222 2222223355666666655554444444444444455566788999988
Q ss_pred HHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 043637 499 IHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIK 575 (693)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 575 (693)
.+++.....-......|+ +.-.+...|++++|++.|-++- ..+..+.-.+...|-...+...|++++-+... +.
T Consensus 512 ~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--li 588 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LI 588 (840)
T ss_pred HHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cC
Confidence 888887754443333343 2234677888999988886644 66777777788888888888899988877766 55
Q ss_pred C-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHhHHHHH
Q 043637 576 P-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVPMLRKIF 653 (693)
Q Consensus 576 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~ 653 (693)
| |+....-|...|-+.|+-.+|.+..-+--+ -++-+.++...|...|....-+++|+.+|++.. .+|+..-|..++
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmi 666 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMI 666 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence 5 567788888899999998888888776542 455678888888888888888999999998875 688888888888
Q ss_pred HHHH-hcCCccHHHHHHHHHhhcCCCCCcchhhhh
Q 043637 654 DKCR-KNGYATLGEWAARRLNELNPWAPFQFKITT 687 (693)
Q Consensus 654 ~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 687 (693)
..|. +.|++.+|...|+.+....|+|-.-+-.|.
T Consensus 667 asc~rrsgnyqka~d~yk~~hrkfpedldclkflv 701 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLV 701 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 7774 578999999999999998888776554443
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=2.7e-10 Score=106.76 Aligned_cols=447 Identities=10% Similarity=0.068 Sum_probs=267.5
Q ss_pred hcCCCHHHHHHHHhccCC---CCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH-hHHHHHHHhcCCCCcchhH
Q 043637 189 GKCMVMTDARRMFDDIQN---KNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNF-TFANALFACSFLSSPYEGM 264 (693)
Q Consensus 189 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~ 264 (693)
...+++..|.++|++... .+...|--.+..-.++.....|..+++..... -|.+. .|-..+..--..|++..|.
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHH
Confidence 344566667777776653 45555666666667777777777777776553 23322 2223333334456666666
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCC--CCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC--CC
Q 043637 265 QIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQP--DERNIISWTSIVSGYAISGRIREARELFNEMPE--RN 340 (693)
Q Consensus 265 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~ 340 (693)
++|+.-.+. +|+...|.+.++.-.+...++.|..+++.. ..|++..|.....--.++|....|..+|+...+ .|
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 666665443 566777777777666777777666666652 345666665555555566666666666655433 11
Q ss_pred cccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCc--hhHHHHHH
Q 043637 341 VISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSN--IFVSNALL 418 (693)
Q Consensus 341 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 418 (693)
...-..+..+++ .-=.....++.|.-+++.....- +.+ ...|..+.
T Consensus 240 d~~~e~lfvaFA-------------------------------~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~ 287 (677)
T KOG1915|consen 240 DEEAEILFVAFA-------------------------------EFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYT 287 (677)
T ss_pred HHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHH
Confidence 111111111111 11112223334444444433321 111 22333333
Q ss_pred HHHHHcCChHHHHHH--------HHhhcC-CC-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHH-------HHH
Q 043637 419 DMYRKCGNLRSARIW--------FYQMSQ-RR-DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKF-------TFE 481 (693)
Q Consensus 419 ~~~~~~~~~~~a~~~--------~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~-------~~~ 481 (693)
..--+-|+....... +++.+. .| |-.+|--.+..-...|+.+...++|++.....+|-.. .|.
T Consensus 288 ~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYL 367 (677)
T KOG1915|consen 288 AFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYL 367 (677)
T ss_pred HHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHH
Confidence 333333443222221 112222 23 5567777777777888888899999888776655321 222
Q ss_pred HHHHHh---cccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHH----HhhCCHHHHHHHHhcCC--CCCHHHHHHHHHH
Q 043637 482 TLLAAC---ANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVY----TKCCCLEYAIRVFKESS--SLDVIICNSMILG 552 (693)
Q Consensus 482 ~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~ 552 (693)
-+=-+| ....+++.+.++++..++. ++....++.-+--+| .++.++..|.+++-... -|...++...|..
T Consensus 368 WinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIel 446 (677)
T KOG1915|consen 368 WINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIEL 446 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 222222 3467888999999988882 333445555444343 46788899999988766 6777888888888
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChH
Q 043637 553 FCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMK 631 (693)
Q Consensus 553 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 631 (693)
-.+.++++.+..++++.++ ..| |..+|......-...|+.+.|..+|+-+.....+.--...|...|+.-...|.++
T Consensus 447 ElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~e 524 (677)
T KOG1915|consen 447 ELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFE 524 (677)
T ss_pred HHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHH
Confidence 8899999999999999999 566 4588888887778889999999999988863222222334555566666799999
Q ss_pred HHHHHHHhCC-CCCCHHhHHHHHHHHH-----hcC-----------CccHHHHHHHHHhh
Q 043637 632 ELEDFVNRMP-FNPTVPMLRKIFDKCR-----KNG-----------YATLGEWAARRLNE 674 (693)
Q Consensus 632 ~A~~~~~~~~-~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 674 (693)
+|..+++++. ..+-.+.|.++...-. ..| +...|..+++.+..
T Consensus 525 kaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 525 KARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 9999998886 3445556666554433 223 45667777777655
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1.2e-12 Score=127.91 Aligned_cols=281 Identities=11% Similarity=-0.008 Sum_probs=215.2
Q ss_pred chhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCC-----CChhhHHHHHHHHHhcCChHHHHHH
Q 043637 391 EIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQR-----RDKVSWNAVLTGYARRGQSEEAMTS 465 (693)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~ 465 (693)
+..+|...|.. ....+.-...+...+..+|...+++++|++.|...... .+...|++.+..+.+ +-++..
T Consensus 334 ~~~~A~~~~~k-lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEK-LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHh-hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 34556666665 32233334466667778888888888886666665542 266677777665533 223333
Q ss_pred HHH-hhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHH
Q 043637 466 FSE-MQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVI 544 (693)
Q Consensus 466 ~~~-~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 544 (693)
+.+ +....+..+.+|..+.++|+-+++.+.|.+.|++.+..+.. ....|+.+.+-+.....+|.|...|......|+.
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 333 33333777889999999999999999999999998874432 6788888888888999999999999998877776
Q ss_pred HHH---HHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 043637 545 ICN---SMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECM 620 (693)
Q Consensus 545 ~~~---~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 620 (693)
.|| .+...|.+.++++.|+-.|++..+ +.|. .+....+...+-+.|+.|+|+++++++.. --+.|+..-...
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHR 563 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHH
Confidence 555 467789999999999999999999 8885 46677777899999999999999999984 334455555667
Q ss_pred HHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCc
Q 043637 621 IKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPF 681 (693)
Q Consensus 621 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 681 (693)
+..+...++.++|+..|++++ .+.+...+..++..|.+.|+.+.|..-+--+..++|....
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 788999999999999999986 4556667778889999999999999999999999996544
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.55 E-value=2.2e-14 Score=137.10 Aligned_cols=252 Identities=11% Similarity=0.087 Sum_probs=108.8
Q ss_pred HHHHHHHHcCChHHHHHHHHhhcCC---C-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccC
Q 043637 416 ALLDMYRKCGNLRSARIWFYQMSQR---R-DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANIS 491 (693)
Q Consensus 416 ~l~~~~~~~~~~~~a~~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 491 (693)
.+...+.+.|++++|++++.+.... | +...|..+.......++.++|.+.++++...++-+...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 4466777788888888877544332 2 444555556666678888888888888877764456667666666 6888
Q ss_pred ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhCCChHHHHHHH
Q 043637 492 SLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS-----SLDVIICNSMILGFCHNERGREALEVF 566 (693)
Q Consensus 492 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~ 566 (693)
++++|.+++....+.. +++..+..++..+.+.++++++..+++... +.+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888887766543 455667778888888899998888887743 457778888999999999999999999
Q ss_pred HHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CC
Q 043637 567 GLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FN 643 (693)
Q Consensus 567 ~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~ 643 (693)
++..+ ..|+ ......++..+...|+.+++.++++..... .+.|+..+..+..+|...|+.++|+.++++.. .+
T Consensus 170 ~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 170 RKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 99999 6785 577888999999999999999999988753 36677788899999999999999999999885 45
Q ss_pred CCHHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 043637 644 PTVPMLRKIFDKCRKNGYATLGEWAARRLNE 674 (693)
Q Consensus 644 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 674 (693)
.|+.....+..++...|+.++|..+.+++++
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 5777888899999999999999999988875
No 40
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3.1e-11 Score=115.72 Aligned_cols=276 Identities=9% Similarity=-0.033 Sum_probs=185.9
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 043637 408 SSNIFVSNALLDMYRKCGNLRSARIWFYQMSQR--RDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLA 485 (693)
Q Consensus 408 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~ 485 (693)
.-+..+.....+-+...+++.+..++..+.+.. ++...+..-|.++...|+..+-..+=.++....+....+|.++..
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 334455555566666677777776666666652 355556666667777777777777777776666666777777777
Q ss_pred HhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHH
Q 043637 486 ACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREA 562 (693)
Q Consensus 486 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A 562 (693)
-|...|+..+|++.|.+....... -...|-.+.+.|.-.+..|+|...+.... +..-..+--+..-|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHH
Confidence 777778888888887776654333 23456667777777777777777765443 11111222344456677788888
Q ss_pred HHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCCChhHHHHHHHHHHhcCChHHHHHH
Q 043637 563 LEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKY-----GIIPQLEHYECMIKLYCRYGYMKELEDF 636 (693)
Q Consensus 563 ~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 636 (693)
.+.|.+... +.| |+..++-+.-.....+.+.+|..+|+...+.- .......+++.|+.+|.+.+++++|+..
T Consensus 400 e~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 400 EKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 888887777 666 46777777767777788888888887776210 0111445677788888888888888888
Q ss_pred HHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhh
Q 043637 637 VNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKIT 686 (693)
Q Consensus 637 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 686 (693)
+++.. .+.+..++.+++..|...|+++.|...+-+++-++|++..+-..|
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 88764 466777777888888888888888888888888888775443333
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.3e-10 Score=108.52 Aligned_cols=358 Identities=11% Similarity=0.019 Sum_probs=197.6
Q ss_pred CCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc-HHHHHHHHHhC
Q 043637 276 EGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVIS-WNAMLAGYTRS 354 (693)
Q Consensus 276 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~l~~~~~~~ 354 (693)
..|...+-...-.+.+.|..+.|++.|......-+..|.+.+....-..+.+.+..+.......+... ---+..++-..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 33444433344445566777777777766555444445444433333333333333322222211111 01123344444
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCC--CCchhHHHHHHHHHHHcCChHHHHH
Q 043637 355 LLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDY--SSNIFVSNALLDMYRKCGNLRSARI 432 (693)
Q Consensus 355 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 432 (693)
.+.+++..-.+.+...|..-+...-+....+.-...++++|+.+|+++.+... -.|..+|..++- .+..+-.-+ -
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~skLs-~ 317 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDKSKLS-Y 317 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhhHHHH-H
Confidence 56666766666666666555554444444455566777777777777776531 114445554442 222211111 1
Q ss_pred HHHhh--cCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCc
Q 043637 433 WFYQM--SQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEI 510 (693)
Q Consensus 433 ~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 510 (693)
+-... +.+--+.|...+.+-|.-.++.++|...|++..+.++.....++.+..-|...++...|.+-++..++.++.
T Consensus 318 LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~- 396 (559)
T KOG1155|consen 318 LAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR- 396 (559)
T ss_pred HHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-
Confidence 11111 111123344455556666677777777777776666666666666777777777777777777777765443
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 043637 511 NVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLA 587 (693)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 587 (693)
|-..|-.|.++|.-.+...-|+-.|++.. +.|...|.+|..+|.+.++.++|++.|.+....| ..+...+..|.+.
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakL 475 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKL 475 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHH
Confidence 56666667777777777777777776654 5667777777777777777777777777776654 2244666777777
Q ss_pred HhccCcHHHHHHHHHHhHHhc--CCCCChhH---HHHHHHHHHhcCChHHHHHHHH
Q 043637 588 CIHEGNVKLALQFFDSMRCKY--GIIPQLEH---YECMIKLYCRYGYMKELEDFVN 638 (693)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~~~--~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~ 638 (693)
|-+.++..+|.+.+++..+.. .-..+..+ ---|..-+.+.+++++|.....
T Consensus 476 ye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 777777777777766665421 11112212 1224444556666666665443
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=4.3e-11 Score=119.72 Aligned_cols=249 Identities=10% Similarity=-0.069 Sum_probs=174.7
Q ss_pred HHcCChHHHHHHHHhhcCC-CChhhHH--HHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHH
Q 043637 422 RKCGNLRSARIWFYQMSQR-RDKVSWN--AVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQ 498 (693)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~-~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 498 (693)
.+.|+.+.|...+.++... |+..... .....+...|++++|.+.++++....+-+...+..+...+...|+++.|..
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 4556666665555555442 3322221 223455666777777777777666655556666666677777777777777
Q ss_pred HHHHHHHhCCCcchh-------HHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 043637 499 IHCFVIRNCYEINVV-------CRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGL 568 (693)
Q Consensus 499 ~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 568 (693)
++..+.+.+..++.. .|..++.......+.+...++++..+ +.++.....+...+...|+.++|.+.+++
T Consensus 209 ~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~ 288 (398)
T PRK10747 209 ILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILD 288 (398)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777654432221 22223333334445666677777766 56778888999999999999999999999
Q ss_pred HHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHH
Q 043637 569 MKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVP 647 (693)
Q Consensus 569 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~ 647 (693)
..+ ..||.... ++.+....++.+++++..+...+ ..+-|+..+..+.+.+.+.|++++|.+.|++.. ..|+..
T Consensus 289 ~l~--~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~ 362 (398)
T PRK10747 289 GLK--RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY 362 (398)
T ss_pred HHh--cCCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 888 45555322 23444566999999999999885 455567778889999999999999999999886 568888
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhhcC
Q 043637 648 MLRKIFDKCRKNGYATLGEWAARRLNELN 676 (693)
Q Consensus 648 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 676 (693)
.+..+...+.+.|+.++|...+++.+.+-
T Consensus 363 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 363 DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 88889999999999999999999998754
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=6.4e-11 Score=119.25 Aligned_cols=255 Identities=8% Similarity=-0.072 Sum_probs=167.3
Q ss_pred HHHHHHcCChHHHHHHHHhhcCC-CChh--hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChH
Q 043637 418 LDMYRKCGNLRSARIWFYQMSQR-RDKV--SWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLE 494 (693)
Q Consensus 418 ~~~~~~~~~~~~a~~~~~~~~~~-~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 494 (693)
.....+.|+.+.|...+.+.... |+.. ..-.....+...|+++.|.+.++.+.+..+-+...+..+...+...|+++
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence 34445556666665555554332 3221 22223555666677777777777776665555566667777777777777
Q ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHH---H----hhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHH
Q 043637 495 QGKQIHCFVIRNCYEINVVCRGALVEVY---T----KCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALE 564 (693)
Q Consensus 495 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~ 564 (693)
.+.+.+..+.+.+..........-..++ . .....+.....++..+ +.++..+..++..+...|+.++|.+
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~ 284 (409)
T TIGR00540 205 ALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE 284 (409)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence 7777777777665432222211111111 1 1222334444555554 2478888899999999999999999
Q ss_pred HHHHHHHCCCCCChHH---HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh--
Q 043637 565 VFGLMKKEGIKPDHIT---FHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNR-- 639 (693)
Q Consensus 565 ~~~~m~~~g~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-- 639 (693)
.+++..+ ..||... .....-.....++.+.+.+.++...+.....|+.....++.+.+.+.|++++|.+.|++
T Consensus 285 ~l~~~l~--~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~ 362 (409)
T TIGR00540 285 IIFDGLK--KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA 362 (409)
T ss_pred HHHHHHh--hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH
Confidence 9999998 4565532 12222333456788889999988875322222226677899999999999999999993
Q ss_pred C-CCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 043637 640 M-PFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNE 674 (693)
Q Consensus 640 ~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 674 (693)
. ...|++..+..+...+.+.|+.++|.+.+++.+.
T Consensus 363 a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 363 ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 3578888888999999999999999999999866
No 44
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=5.6e-09 Score=106.73 Aligned_cols=574 Identities=11% Similarity=0.066 Sum_probs=350.5
Q ss_pred hhHHHHHHhccCChhhHHHhhccCCC--CCcccHH----HHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHh
Q 043637 80 LNRAIECYGKCGNLDDARGLFDEMPE--RDGGSWN----AMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSS 153 (693)
Q Consensus 80 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 153 (693)
+..+...|.++|-...|++.+..+.. +..++-+ --+..|...-.++.++++++.|...++..+..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 56778888899999999988877643 1111111 11234445557888999999999988888877777776666
Q ss_pred hccCChHHHHHHHHHHHHh-----------CCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCC----------------
Q 043637 154 AEELELGVSKQLHGLIVKR-----------GFCGNVILESSLVDAYGKCMVMTDARRMFDDIQN---------------- 206 (693)
Q Consensus 154 ~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------------- 206 (693)
...=..+...++|+..+.. ++..|+.+.-..|.+.++.|++.+.+++.++-.-
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 6555555556666655432 3466777888899999999999999887655320
Q ss_pred ---C------------Cccc--H----HHHHHHHHhcCCchHHH-------------HHHHHHH--HCCCCCCHHhHHHH
Q 043637 207 ---K------------NAVS--W----NVIVRRYLVAGNGKEAV-------------VMFFKML--REDIRPLNFTFANA 250 (693)
Q Consensus 207 ---~------------~~~~--~----~~li~~~~~~~~~~~a~-------------~~~~~m~--~~g~~p~~~~~~~l 250 (693)
| |.+. | .-.|..|.+.=++...- ++.+.+. -.|..| ...+
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~----~deL 844 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFP----VDEL 844 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCC----hHHH
Confidence 1 1111 1 11234444432222111 1111111 123333 3445
Q ss_pred HHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHH-Hh---hhcC------CCCCCc----------
Q 043637 251 LFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDA-RG---LLDQ------PDERNI---------- 310 (693)
Q Consensus 251 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a-~~---~~~~------~~~~~~---------- 310 (693)
..-+.+++++..-...++.....|.. |..++++|...|...++-.+- ++ .++. ..++|+
T Consensus 845 v~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerG 923 (1666)
T KOG0985|consen 845 VEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERG 923 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeeccc
Confidence 55666777777777777777777754 777888887777765543321 00 0110 001111
Q ss_pred -------------hhHHHHHHHHHhcCCHHHHHHHHh-----------hCC-----C-CCcccHHHHHHHHHhCCCHHHH
Q 043637 311 -------------ISWTSIVSGYAISGRIREARELFN-----------EMP-----E-RNVISWNAMLAGYTRSLLWKEA 360 (693)
Q Consensus 311 -------------~~~~~li~~~~~~g~~~~A~~~~~-----------~~~-----~-~~~~~~~~l~~~~~~~~~~~~a 360 (693)
+.|....+-+.+..+.+-=.+++. ... + .|+..-+..+.++...+-..+-
T Consensus 924 qcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eL 1003 (1666)
T KOG0985|consen 924 QCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNEL 1003 (1666)
T ss_pred CCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHH
Confidence 123333333333333332222221 111 1 3555566677788888888888
Q ss_pred HHHHHHHHHcCCCC--CHhhHHHHHHHHhcccchhhHHHHHHHHHHhC-----------------------CCCchhHHH
Q 043637 361 LDFVFLMRKTTKDI--DQVTLGLILNVCAGLSEIKMGKEVHGFIHRND-----------------------YSSNIFVSN 415 (693)
Q Consensus 361 ~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------------------~~~~~~~~~ 415 (693)
++++++..-..-.- +...-+.++-...+ -+...+.++.+.+.... +..+....+
T Consensus 1004 IELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~ 1082 (1666)
T KOG0985|consen 1004 IELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQ 1082 (1666)
T ss_pred HHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHH
Confidence 88888775322111 11111222221111 12222222222222111 112222222
Q ss_pred HHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHH
Q 043637 416 ALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQ 495 (693)
Q Consensus 416 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 495 (693)
.|++ .-+.++.| ..+-+.. ..+..|+.+..+-.+.|...+|++-|-+ ..|+..|..+++.+.+.|.+++
T Consensus 1083 VLie---~i~~ldRA-~efAe~~--n~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~ed 1151 (1666)
T KOG0985|consen 1083 VLIE---NIGSLDRA-YEFAERC--NEPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYED 1151 (1666)
T ss_pred HHHH---HhhhHHHH-HHHHHhh--CChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHH
Confidence 2222 22344444 2222222 2446799999999999999999988766 4567789999999999999999
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 043637 496 GKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIK 575 (693)
Q Consensus 496 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 575 (693)
-.+++...++..-+|... +.|+-+|++.+++.+-++++. -|+..-...+..-|...|.++.|.-++..
T Consensus 1152 Lv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~------- 1219 (1666)
T KOG0985|consen 1152 LVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSN------- 1219 (1666)
T ss_pred HHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHH-------
Confidence 999999888876666554 578889999999888777654 46776677778888888888887766653
Q ss_pred CChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHH
Q 043637 576 PDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDK 655 (693)
Q Consensus 576 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 655 (693)
...|..|...+...|++..|.+.-+++ .+..+|..+-.+|...+.+.-|.-.=-. .--...-+..++..
T Consensus 1220 --vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQiCGL~--iivhadeLeeli~~ 1288 (1666)
T KOG0985|consen 1220 --VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLAQICGLN--IIVHADELEELIEY 1288 (1666)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHHHhcCce--EEEehHhHHHHHHH
Confidence 345777888888888888887765544 2566788888888877776554321000 11123345568888
Q ss_pred HHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcccCC
Q 043637 656 CRKNGYATLGEWAARRLNELNPWAPFQFKITTNRFDRY 693 (693)
Q Consensus 656 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 693 (693)
|..+|-+++-+..+|..+-++-.+.+.|.-|+-+|++|
T Consensus 1289 Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1289 YQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988999999999999987
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1e-10 Score=109.25 Aligned_cols=356 Identities=10% Similarity=-0.007 Sum_probs=258.3
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHH--HHHHH
Q 043637 309 NIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGL--ILNVC 386 (693)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~--ll~~~ 386 (693)
|...+-.....+.+.|....|++.|......-+..|.+.+....-.-+.+.+..+. .|...|...+.. +..++
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~-----~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILV-----VGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHH-----hcCcccchHHHHHHHHHHH
Confidence 34444445556677888899999988877655555655444333222322222221 122222222222 23355
Q ss_pred hcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCC-C----ChhhHHHHHHHHHhcCChHH
Q 043637 387 AGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQR-R----DKVSWNAVLTGYARRGQSEE 461 (693)
Q Consensus 387 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~ 461 (693)
......+++.+-.......|++.+...-+....+.....+++.|+..|++.... | |..+|+.++-. +..+.
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s-- 313 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS-- 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH--
Confidence 556678888888888888999888888888888888999999999999998875 3 67788777643 33221
Q ss_pred HHHHHHHh-hhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC-
Q 043637 462 AMTSFSEM-QWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS- 539 (693)
Q Consensus 462 a~~~~~~~-~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 539 (693)
.+..+.+- ..-.+-.+.|..++.+-|+-.++.++|..+|++..+.+.. ....|+.+.+-|....+...|.+.+....
T Consensus 314 kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 314 KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 12222222 2222445568888888999999999999999999987655 56778889999999999999999999766
Q ss_pred --CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhH
Q 043637 540 --SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEH 616 (693)
Q Consensus 540 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 616 (693)
+.|-..|-.+.++|.-.+-+.-|+-.|++..+ ++| |...|.+|..+|.+.++.++|++.|..... .-..+...
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte~~~ 468 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTEGSA 468 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccchHH
Confidence 67788999999999999999999999999999 788 578999999999999999999999999985 33446678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC-------CCC--HHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCC
Q 043637 617 YECMIKLYCRYGYMKELEDFVNRMPF-------NPT--VPMLRKIFDKCRKNGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 617 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 678 (693)
+..|.+.|.+.++.++|...+++... ..+ ....--|...+.+.+++++|.........-+|.
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 89999999999999999998876531 111 112222555666788999988877777665553
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=6.5e-14 Score=133.81 Aligned_cols=240 Identities=11% Similarity=0.035 Sum_probs=113.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCC-CCCHHHH-HHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhh
Q 043637 448 AVLTGYARRGQSEEAMTSFSEMQWET-RPSKFTF-ETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKC 525 (693)
Q Consensus 448 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (693)
.+...+.+.|++++|++++++..... +|+...| ..+...+...++.+.|...++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34667888999999999997654444 4555444 44555667789999999999999986655 56667777777 789
Q ss_pred CCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHHhccCcHHHHHHHHH
Q 043637 526 CCLEYAIRVFKESS--SLDVIICNSMILGFCHNERGREALEVFGLMKKEG-IKPDHITFHGILLACIHEGNVKLALQFFD 602 (693)
Q Consensus 526 ~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (693)
+++++|.++++... .+++..+..++..+...++++++.++++++.... .+++...|..+...+.+.|+.++|++.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999998765 5667778888999999999999999999987643 23466778888899999999999999999
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 603 SMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 603 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
++.+. .+.|+.....++..+...|+.+++..+++... .+.++..+..+..++...|+.++|...++++.+.+|+|+
T Consensus 171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 99852 33357788899999999999999888887764 245666788899999999999999999999999999999
Q ss_pred cchhhhhhccc
Q 043637 681 FQFKITTNRFD 691 (693)
Q Consensus 681 ~~~~~l~~~y~ 691 (693)
.....++.++.
T Consensus 249 ~~~~~~a~~l~ 259 (280)
T PF13429_consen 249 LWLLAYADALE 259 (280)
T ss_dssp HHHHHHHHHHT
T ss_pred ccccccccccc
Confidence 99999998875
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.49 E-value=5.4e-11 Score=119.00 Aligned_cols=276 Identities=11% Similarity=0.004 Sum_probs=177.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHH--HHHHHHHHHcCChHHHH
Q 043637 354 SLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVS--NALLDMYRKCGNLRSAR 431 (693)
Q Consensus 354 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~ 431 (693)
.|++++|.+.+....+..-.| ...|.....+....|+.+.+...+..+.+. .|+.... ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 455555555544433321111 111222223334555666666666555443 2332221 12355667777777777
Q ss_pred HHHHhhcCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHH--------HHHHHHHHhcccCChHHHHHHHH
Q 043637 432 IWFYQMSQR-R-DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKF--------TFETLLAACANISSLEQGKQIHC 501 (693)
Q Consensus 432 ~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~--------~~~~ll~~~~~~~~~~~a~~~~~ 501 (693)
..+.+.... | +......+...|.+.|++++|.+++..+.+....+.. +|..++.......+.+...++|+
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777666552 3 4556667777777788888888888887776622222 23333333334445555555665
Q ss_pred HHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-
Q 043637 502 FVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS--SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH- 578 (693)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 578 (693)
.+.+. .+.++.....+...+...|+.++|...+++.. ++|.. -.++.+....++.+++++..++..+ ..|+.
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk--~~P~~~ 328 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDER--LVLLIPRLKTNNPEQLEKVLRQQIK--QHGDTP 328 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH--HHHHHhhccCCChHHHHHHHHHHHh--hCCCCH
Confidence 55432 23466777788888888888888888887766 34442 2234444566899999999999888 46754
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
..+..+...|.+.|++++|.+.|+.+.+ ..|+...+..+...+.+.|+.++|...+++.
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5577777999999999999999999874 5799888889999999999999999988865
No 48
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=6.6e-11 Score=111.25 Aligned_cols=211 Identities=12% Similarity=0.078 Sum_probs=137.1
Q ss_pred HcCChHHHHHHHHhhcC-CC-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHH
Q 043637 423 KCGNLRSARIWFYQMSQ-RR-DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIH 500 (693)
Q Consensus 423 ~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 500 (693)
-.|+.-.|...+...+. .| +...|-.+...|....+.++.+..|.+.....+.+..+|..-.....-.++++.|..=|
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 34566666555555554 22 22336666677777777777777777777766666667766666666677777777777
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 043637 501 CFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD 577 (693)
Q Consensus 501 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 577 (693)
++.++..+. ++..|-.+.-+..+.++++++...|++.. +..+..|+.....+...++++.|.+.|+..++ +.|+
T Consensus 418 ~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~ 494 (606)
T KOG0547|consen 418 QKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPR 494 (606)
T ss_pred HHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccc
Confidence 777764433 45555556666667777777777777766 55566777777777788888888888877777 4454
Q ss_pred h---------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 578 H---------ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ-LEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 578 ~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
. ..-..++..-. .+++..|.++++++.+ +.|. ...|..|...-.+.|+.++|+++|++.
T Consensus 495 ~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e---~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIE---LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred cccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHc---cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1 11111221112 2677777777777763 2332 344677777777888888888888765
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1.2e-09 Score=102.48 Aligned_cols=401 Identities=10% Similarity=0.008 Sum_probs=271.0
Q ss_pred HHHHHHHHHHHcCChhHHHhhhcCCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcccHHHHHHHHHhCC
Q 043637 281 VLGSLTEMYVKCGRLEDARGLLDQPDE--R-NIISWTSIVSGYAISGRIREARELFNEMPE--RNVISWNAMLAGYTRSL 355 (693)
Q Consensus 281 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~ 355 (693)
.|-..+.+-.++..+..|..+++.... | -...|-..+..--..|++..|.++|+.-.+ |+...|++.|..=.+-+
T Consensus 109 LWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRyk 188 (677)
T KOG1915|consen 109 LWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYK 188 (677)
T ss_pred HHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Confidence 333444444455555555555544332 1 112333444444445666677777776554 77788888888777778
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHh-C-CCCchhHHHHHHHHHHHcCChHHHHHH
Q 043637 356 LWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRN-D-YSSNIFVSNALLDMYRKCGNLRSARIW 433 (693)
Q Consensus 356 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 433 (693)
.++.|..+|++..- +.|+..+|......=-+.|....+..+++...+. | -..+...+.+....-.++..++.|.-+
T Consensus 189 eieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~i 266 (677)
T KOG1915|consen 189 EIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFI 266 (677)
T ss_pred HHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887765 4577777777777667778888888887776642 1 122334555666655667778888555
Q ss_pred HHhhcCC-CC---hhhHHHHHHHHHhcCCh---HHHHHH-----HHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHH
Q 043637 434 FYQMSQR-RD---KVSWNAVLTGYARRGQS---EEAMTS-----FSEMQWETRPSKFTFETLLAACANISSLEQGKQIHC 501 (693)
Q Consensus 434 ~~~~~~~-~~---~~~~~~l~~~~~~~~~~---~~a~~~-----~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 501 (693)
+.-.+.. |. ...|..+...=-+-|+. ++++-- ++.+...++-|-.++--.++.-...|+.+...++++
T Consensus 267 ykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yE 346 (677)
T KOG1915|consen 267 YKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYE 346 (677)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5555543 22 23344444333344543 333322 344455557777888888888888999999999999
Q ss_pred HHHHhCCCcch-hHHHHHHHH--------HHhhCCHHHHHHHHhcCC---CCCHHH----HHHHHHHHHhCCChHHHHHH
Q 043637 502 FVIRNCYEINV-VCRGALVEV--------YTKCCCLEYAIRVFKESS---SLDVII----CNSMILGFCHNERGREALEV 565 (693)
Q Consensus 502 ~~~~~~~~~~~-~~~~~l~~~--------~~~~~~~~~A~~~~~~~~---~~~~~~----~~~l~~~~~~~g~~~~A~~~ 565 (693)
+.+..-++... ..+...+-. =....+.+.+.++++... +....+ |.....-..++.+...|.++
T Consensus 347 rAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARki 426 (677)
T KOG1915|consen 347 RAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKI 426 (677)
T ss_pred HHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 99875333221 222222211 124678888999998765 444444 44445555688899999999
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 043637 566 FGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPT 645 (693)
Q Consensus 566 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 645 (693)
+...+. .-|...+|...|..-.+.+.+|....++++..+ -.+-+..+|......-...|+.+.|..+|+-...+|.
T Consensus 427 LG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 427 LGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 998776 789999999999999999999999999999985 2334567788777777889999999999998876663
Q ss_pred H----HhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhh
Q 043637 646 V----PMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTN 688 (693)
Q Consensus 646 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 688 (693)
. ..|.+.++.-...|.+++|...|+++++..+ +...+.+.++
T Consensus 503 ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~-h~kvWisFA~ 548 (677)
T KOG1915|consen 503 LDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ-HVKVWISFAK 548 (677)
T ss_pred cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc-cchHHHhHHH
Confidence 2 3677777777789999999999999999888 4446666554
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.46 E-value=1.3e-10 Score=117.02 Aligned_cols=283 Identities=12% Similarity=-0.012 Sum_probs=187.5
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHH
Q 043637 353 RSLLWKEALDFVFLMRKTTKDIDQV-TLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSAR 431 (693)
Q Consensus 353 ~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 431 (693)
..|+++.|.+.+.+..+. .|+.. .+-....+....|+.+.+.+.+....+..-.+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 456677777766655443 33322 222334455566777777777766654331222223344566777788888887
Q ss_pred HHHHhhcCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHH-HHHHh---cccCChHHHHHHHHHHHH
Q 043637 432 IWFYQMSQR-R-DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFET-LLAAC---ANISSLEQGKQIHCFVIR 505 (693)
Q Consensus 432 ~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~-ll~~~---~~~~~~~~a~~~~~~~~~ 505 (693)
..+...... | +...+..+...+.+.|++++|.+.+..+.+.+.++...+.. -..++ ...+..+.+.+.+..+.+
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777777663 4 55567777888888888888888888888776333333321 11111 222223333344544444
Q ss_pred hCCC---cchhHHHHHHHHHHhhCCHHHHHHHHhcCC--CCCHHH---HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 043637 506 NCYE---INVVCRGALVEVYTKCCCLEYAIRVFKESS--SLDVII---CNSMILGFCHNERGREALEVFGLMKKEGIKPD 577 (693)
Q Consensus 506 ~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 577 (693)
.... .+...+..+...+...|+.++|.+.+++.. .||... ...........++.+.+.+.+++..+ ..|+
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCC
Confidence 3332 367788888889999999999999998876 344431 12222233445778889999998888 4675
Q ss_pred hH---HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 578 HI---TFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 578 ~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
.. ...++.+.|.+.|++++|.+.|+.... ....|+...+..+...+.+.|+.++|.+++++.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44 456778999999999999999996443 366899999999999999999999999999874
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=3e-10 Score=106.96 Aligned_cols=217 Identities=12% Similarity=-0.023 Sum_probs=161.0
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHH
Q 043637 453 YARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAI 532 (693)
Q Consensus 453 ~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 532 (693)
+.-.|+.-.|.+-|+......+.+...|--+..+|....+.++....|.+..+.+.. ++.+|..-.+++.-.+++++|.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 344678888888888887776333333666777788888999999999988886654 6777888888888888999999
Q ss_pred HHHhcCCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 043637 533 RVFKESSS---LDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYG 609 (693)
Q Consensus 533 ~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 609 (693)
.-|++... .+...|-.+..+.-+.+++++++..|++.+.+ ++--+..|+.....+..+++++.|.+.++..++
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--- 490 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--- 490 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---
Confidence 99988773 34456666666677888999999999998884 333458888888999999999999999998874
Q ss_pred CCCC---------hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhc
Q 043637 610 IIPQ---------LEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNEL 675 (693)
Q Consensus 610 ~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 675 (693)
+.|+ +.+...++-.-. .+++.+|+.++++.. .+.....+..+...-..+|+.++|++.|++...+
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3343 112222222222 388889999998885 3344557778888888899999999999887664
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.45 E-value=4.1e-08 Score=96.00 Aligned_cols=196 Identities=14% Similarity=0.155 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhcCCC--C----hhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-C-----------
Q 043637 413 VSNALLDMYRKCGNLRSARIWFYQMSQRR--D----KVSWNAVLTGYARRGQSEEAMTSFSEMQWET-R----------- 474 (693)
Q Consensus 413 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~----------- 474 (693)
.+..+.+.|-..|+++.|..++.+...-| . ..+|..-...=.++.+++.|+++.+...... .
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 45666677777777777755555555533 1 1234444444555666777777666653222 1
Q ss_pred C------CHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC----CCCHH
Q 043637 475 P------SKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS----SLDVI 544 (693)
Q Consensus 475 p------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~ 544 (693)
+ +...|...++.-...|-++....+++++++..+. ++.+.......+....-++++.+.+++.. .|++.
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 1 1123444445455567888888899999886554 33333334444556667899999999876 35543
Q ss_pred -HHHHHHHHHHhC---CChHHHHHHHHHHHHCCCCCChHHHHHHH--HHHhccCcHHHHHHHHHHhHHhcCCCC
Q 043637 545 -ICNSMILGFCHN---ERGREALEVFGLMKKEGIKPDHITFHGIL--LACIHEGNVKLALQFFDSMRCKYGIIP 612 (693)
Q Consensus 545 -~~~~l~~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~p 612 (693)
.|+..+..+.+. ...+.|..+|++.++ |++|...-+..|+ ..--+.|....|+.+++++.. ++++
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~ 618 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKE 618 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCH
Confidence 777776665542 358999999999999 7887653333332 333455777888888888763 4444
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=3.7e-11 Score=117.77 Aligned_cols=274 Identities=13% Similarity=0.096 Sum_probs=196.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhC--CCCchhHHHHHHHHHHHcCChHHHHHH
Q 043637 356 LWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRND--YSSNIFVSNALLDMYRKCGNLRSARIW 433 (693)
Q Consensus 356 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 433 (693)
+..+|+..|..+.+. +.-.......+-.+|...+++++++++|+.+.+.. ..-+..+|.+.+-.+-+. ++-. -+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~--v~Ls-~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE--VALS-YL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh--HHHH-HH
Confidence 455666666663332 22223444455566777777777777777766532 122455666655433221 1111 12
Q ss_pred HHhhcC--CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcc
Q 043637 434 FYQMSQ--RRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEIN 511 (693)
Q Consensus 434 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 511 (693)
-.+.+. +..+.+|.++..+|.-+++.+.|++.|++..+..+-...+|+.+..-+.....+|.|...|+..+. .+
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~ 485 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VD 485 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CC
Confidence 222222 235678999999999999999999999998877676888888888888888899999988887765 45
Q ss_pred hhHHHH---HHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHH
Q 043637 512 VVCRGA---LVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGI 584 (693)
Q Consensus 512 ~~~~~~---l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l 584 (693)
+..|++ +.-.|.+.++++.|+-.|++.. +.+.+....+...+.+.|+.++|+.++++... +.| |+.+-..-
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHH
Confidence 666665 4567889999999999999877 55667777788888999999999999999988 566 55565666
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 585 LLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 585 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
+..+...+++++|+..++++++ -++.+...|..+++.|.+.|+.+.|+.-|.-+.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 7788888999999999999974 444456678888999999999999998876553
No 54
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=2.6e-09 Score=103.28 Aligned_cols=266 Identities=11% Similarity=0.094 Sum_probs=157.1
Q ss_pred HHHHcCChHHHHHHHHhhcC-------CCC-----h-----hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHH
Q 043637 420 MYRKCGNLRSARIWFYQMSQ-------RRD-----K-----VSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFET 482 (693)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~-------~~~-----~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ 482 (693)
.+...|++.+|++.+...+. ..| . .+--.+...+...|+.++|..++.......++|......
T Consensus 184 ~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av 263 (652)
T KOG2376|consen 184 ILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAV 263 (652)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHH
Confidence 44556677777666666521 111 1 112335566778999999999999998887666544333
Q ss_pred HHH---HhcccCChHH--HHHHHHHHHH-----------hCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCC-HHH
Q 043637 483 LLA---ACANISSLEQ--GKQIHCFVIR-----------NCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLD-VII 545 (693)
Q Consensus 483 ll~---~~~~~~~~~~--a~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 545 (693)
..+ +...-.++-. +...++.... ....-....-+.++..| .+..+.+.++........ ...
T Consensus 264 ~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~ 341 (652)
T KOG2376|consen 264 AVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPGMSPESL 341 (652)
T ss_pred HhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCccCchHH
Confidence 322 2222222211 1111111111 00011111122333333 355667777777666322 233
Q ss_pred HHHHHHHHH--hCCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhccCcHHHHHHHHH--------HhHHhcCCCCC
Q 043637 546 CNSMILGFC--HNERGREALEVFGLMKKEGIKPDH--ITFHGILLACIHEGNVKLALQFFD--------SMRCKYGIIPQ 613 (693)
Q Consensus 546 ~~~l~~~~~--~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~p~ 613 (693)
+..++..+. +...+..|.+++...-+. .|.. ......+......|+++.|++++. .+.+ .+..|
T Consensus 342 ~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P- 417 (652)
T KOG2376|consen 342 FPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHLP- 417 (652)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccCh-
Confidence 444444332 223577888888887773 4544 445555678889999999999999 4442 34444
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCCHH----hHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchh
Q 043637 614 LEHYECMIKLYCRYGYMKELEDFVNRMP-----FNPTVP----MLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFK 684 (693)
Q Consensus 614 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 684 (693)
.+...++..|.+.++.+-|..++++.. ..+... ++...+..-.++|+.++|...++.+++++|++...+.
T Consensus 418 -~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~ 496 (652)
T KOG2376|consen 418 -GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLV 496 (652)
T ss_pred -hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHH
Confidence 445667788888888777777766552 112222 3334444445789999999999999999999999988
Q ss_pred hhhhcccC
Q 043637 685 ITTNRFDR 692 (693)
Q Consensus 685 ~l~~~y~~ 692 (693)
.|.-.|++
T Consensus 497 ~lV~a~~~ 504 (652)
T KOG2376|consen 497 QLVTAYAR 504 (652)
T ss_pred HHHHHHHh
Confidence 88777764
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3e-09 Score=102.43 Aligned_cols=93 Identities=11% Similarity=0.000 Sum_probs=73.5
Q ss_pred CCChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhcc--CCCCCcccHHHHHH
Q 043637 39 PVSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDE--MPERDGGSWNAMLG 116 (693)
Q Consensus 39 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~ 116 (693)
..+..-+..+++-+..+.++..|.-+-++....+-.|+.. --+..++.-.|+.+.|..+... +.+.|..+......
T Consensus 13 ~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~--~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~ 90 (611)
T KOG1173|consen 13 ELSLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADI--YWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAK 90 (611)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHH--HHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 3456778888888888889999998888887776444433 4478888888999998888754 45678888888888
Q ss_pred HHHhCCChhhHHHHHHH
Q 043637 117 AYTQNGFPGRTLELFLD 133 (693)
Q Consensus 117 ~~~~~~~~~~a~~~~~~ 133 (693)
.+.+..+|+.|..++..
T Consensus 91 ~l~~lk~~~~al~vl~~ 107 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGR 107 (611)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999998873
No 56
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=4.8e-09 Score=96.83 Aligned_cols=400 Identities=12% Similarity=0.006 Sum_probs=260.4
Q ss_pred chHHHHHHHHHHHHcCChhHHHhhhcCCCCC-CchhHHHHHHHHHhcCC-HHHHHHHHhhCCCCCcccHHHHHHHHHhCC
Q 043637 278 DDVVLGSLTEMYVKCGRLEDARGLLDQPDER-NIISWTSIVSGYAISGR-IREARELFNEMPERNVISWNAMLAGYTRSL 355 (693)
Q Consensus 278 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 355 (693)
+.......+.+|...++-+.|...+.+.++. .....+.++.-+-+.|- -.++.--+.+....-+..... |.+....+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~-i~~ll~l~ 174 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQV-IEALLELG 174 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHH-HHHHHHHh
Confidence 3444556677788888899888888887764 33334444443333332 212211111111111111111 11111100
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH--hcccchhhHHHHHHHHHH-hCCCCchhHHHHHHHHHHHcCChHHHHH
Q 043637 356 LWKEALDFVFLMRKTTKDIDQVTLGLILNVC--AGLSEIKMGKEVHGFIHR-NDYSSNIFVSNALLDMYRKCGNLRSARI 432 (693)
Q Consensus 356 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 432 (693)
+..+...=..|....+.|...+....+.++ +..++...+...+-.+.. .-++.|......+.+++...|+..+|+.
T Consensus 175 -v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~ 253 (564)
T KOG1174|consen 175 -VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAED 253 (564)
T ss_pred -hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHH
Confidence 001111112233334455555555555544 344555555554444443 4567789999999999999999999988
Q ss_pred HHHhhcC-CCChh-hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCc
Q 043637 433 WFYQMSQ-RRDKV-SWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEI 510 (693)
Q Consensus 433 ~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 510 (693)
.|.+... .|+.. ......-.+.+.|+.+....+...+.....-....|..-+......++++.|..+-++.++.+..
T Consensus 254 ~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r- 332 (564)
T KOG1174|consen 254 IFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR- 332 (564)
T ss_pred HHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-
Confidence 8877655 34332 33444455677888888887777775544333333444445556678899999888888775433
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHH-H
Q 043637 511 NVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGIL-L 586 (693)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~-~ 586 (693)
+...+-.-...+...++.++|.-.|.... +-+..+|..|+.+|...|++.+|.-+-+..... +.-+..+...+. .
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~ 411 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTL 411 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcce
Confidence 33344344456788899999999998765 567889999999999999999999888876663 334556666553 3
Q ss_pred HH-hccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCCcc
Q 043637 587 AC-IHEGNVKLALQFFDSMRCKYGIIPQ-LEHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVPMLRKIFDKCRKNGYAT 663 (693)
Q Consensus 587 ~~-~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~ 663 (693)
.| .....-++|.++++... .++|+ ......+...+.+.|+.++++.++++.. ..+|....+.+++.++..+.+.
T Consensus 412 V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q 488 (564)
T KOG1174|consen 412 VLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQ 488 (564)
T ss_pred eeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHH
Confidence 33 33445588999998775 45665 3445667788899999999999999875 6889999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcchh
Q 043637 664 LGEWAARRLNELNPWAPFQFK 684 (693)
Q Consensus 664 ~A~~~~~~~~~~~p~~~~~~~ 684 (693)
+|..-|..++.++|++..+.-
T Consensus 489 ~am~~y~~ALr~dP~~~~sl~ 509 (564)
T KOG1174|consen 489 KAMEYYYKALRQDPKSKRTLR 509 (564)
T ss_pred HHHHHHHHHHhcCccchHHHH
Confidence 999999999999998876654
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.39 E-value=3.3e-09 Score=97.91 Aligned_cols=282 Identities=10% Similarity=-0.044 Sum_probs=172.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHH
Q 043637 354 SLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIW 433 (693)
Q Consensus 354 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 433 (693)
.|+|.+|.+...+-.+.+-.|- ..|..-..+.-..|+.+.+..++.+.-+..-.++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 5667777776666555443332 233344444555555555555555555443344444444444555555555555444
Q ss_pred HHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcch-
Q 043637 434 FYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINV- 512 (693)
Q Consensus 434 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 512 (693)
+.+ +...++-+........++|.+.|++.....++..+.+.+.-.+.
T Consensus 176 v~~--------------------------------ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e 223 (400)
T COG3071 176 VDQ--------------------------------LLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEE 223 (400)
T ss_pred HHH--------------------------------HHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHH
Confidence 444 44443333444444444444444444444444444444333222
Q ss_pred ------hHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHH
Q 043637 513 ------VCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHG 583 (693)
Q Consensus 513 ------~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 583 (693)
.++..+++-....+..+.-...++..+ +.++..-.+++.-+...|+.++|.++.++..+++..|+ -.
T Consensus 224 ~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~ 299 (400)
T COG3071 224 AARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LC 299 (400)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HH
Confidence 123333333333333444444555555 45666777788888888889999988888888777766 22
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCCc
Q 043637 584 ILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVPMLRKIFDKCRKNGYA 662 (693)
Q Consensus 584 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~ 662 (693)
..-.+.+-++.+.-++..++-... .+-++..+..|.+.|.+.+.+.+|...|+... ..|+...+..+..++.+.|+.
T Consensus 300 ~~~~~l~~~d~~~l~k~~e~~l~~--h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 300 RLIPRLRPGDPEPLIKAAEKWLKQ--HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEP 377 (400)
T ss_pred HHHhhcCCCCchHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCh
Confidence 224566778888877777777653 33444778888888999999999999888664 678888888888999999999
Q ss_pred cHHHHHHHHHhh
Q 043637 663 TLGEWAARRLNE 674 (693)
Q Consensus 663 ~~A~~~~~~~~~ 674 (693)
.+|.+..+..+-
T Consensus 378 ~~A~~~r~e~L~ 389 (400)
T COG3071 378 EEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHH
Confidence 999888888775
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.38 E-value=5.3e-07 Score=88.51 Aligned_cols=216 Identities=10% Similarity=-0.003 Sum_probs=97.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHH
Q 043637 445 SWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEIN-VVCRGALVEVYT 523 (693)
Q Consensus 445 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 523 (693)
.|...+..--..|-++....+++++......++........-+....-++++.+++++-+..-..|. ...|+..+.-+.
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 3444444444455555555666665554422222222222223333445555555554443211222 233444443332
Q ss_pred h---hCCHHHHHHHHhcCC---CCCHH--HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhccCc
Q 043637 524 K---CCCLEYAIRVFKESS---SLDVI--ICNSMILGFCHNERGREALEVFGLMKKEGIKPDH--ITFHGILLACIHEGN 593 (693)
Q Consensus 524 ~---~~~~~~A~~~~~~~~---~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~ 593 (693)
+ ..+++.|..+|+... +|.-. .|-....---+.|-...|++++++.... +++.. ..|+..|.--...=-
T Consensus 559 ~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yG 637 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYG 637 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhC
Confidence 2 234666666666544 22111 2222222223445566666666665443 44432 456665533322222
Q ss_pred HHHHHHHHHHhHHhcCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhCC----CCCCHHhHHHHHHHHHhcCCccH
Q 043637 594 VKLALQFFDSMRCKYGIIPQLEH---YECMIKLYCRYGYMKELEDFVNRMP----FNPTVPMLRKIFDKCRKNGYATL 664 (693)
Q Consensus 594 ~~~A~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~ 664 (693)
+.....+++++++. -|+... .-.+...=.+.|..+.|..++.-.. -..+...|++.-..-.++|+-+-
T Consensus 638 v~~TR~iYekaIe~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 638 VPRTREIYEKAIES---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred CcccHHHHHHHHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence 33445555555542 233222 2223344455666666666665443 12234466666666666666333
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=2.2e-09 Score=95.95 Aligned_cols=216 Identities=13% Similarity=0.055 Sum_probs=101.4
Q ss_pred hCCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCc---hhHHHHHHHHHHHcCChH
Q 043637 353 RSLLWKEALDFVFLMRKTTKDI-DQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSN---IFVSNALLDMYRKCGNLR 428 (693)
Q Consensus 353 ~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 428 (693)
-+++.++|.+.|-+|.+. .| +..+--++-+.+-+.|.++.|.++...+.++.--+. ......|..-|...|-++
T Consensus 47 Ls~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 356778888888888762 12 112222344455555666666666555554321111 122233444455555555
Q ss_pred HHHHHHHhhcCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCH----HHHHHHHHHhcccCChHHHHHHHH
Q 043637 429 SARIWFYQMSQRR--DKVSWNAVLTGYARRGQSEEAMTSFSEMQWET-RPSK----FTFETLLAACANISSLEQGKQIHC 501 (693)
Q Consensus 429 ~a~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~~----~~~~~ll~~~~~~~~~~~a~~~~~ 501 (693)
.|+.+|.....+| -..+...|+..|.+..+|++|+++-+++.+.+ .+.. ..|.-+...+....+++.|...++
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 5555554444433 22344445555555555555555555554443 2221 233444444444455555555555
Q ss_pred HHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHH----HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 043637 502 FVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVI----ICNSMILGFCHNERGREALEVFGLMKK 571 (693)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~ 571 (693)
+..+.+.+ ....--.+.+.+...|+++.|.+.++.+.+.|+. +...|..+|...|+.++....+.++.+
T Consensus 205 kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 205 KALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55443322 2222223334444445555555555444422221 334444445555555555555544444
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=5.3e-09 Score=93.53 Aligned_cols=261 Identities=10% Similarity=-0.025 Sum_probs=118.5
Q ss_pred cCCHHHHHHHHhhCCCCCcccH---HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh---hHHHHHHHHhcccchhhHH
Q 043637 323 SGRIREARELFNEMPERNVISW---NAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQV---TLGLILNVCAGLSEIKMGK 396 (693)
Q Consensus 323 ~g~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~ 396 (693)
.++.++|.+.|-+|.+.|..|+ -+|.+.|.+.|..+.|+.+-..+.+..--+... ..-.+-.-|-..|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3445555555555555333333 234445555555555555555544321111100 1111222334445555555
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCC---CC----hhhHHHHHHHHHhcCChHHHHHHHHHh
Q 043637 397 EVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQR---RD----KVSWNAVLTGYARRGQSEEAMTSFSEM 469 (693)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 469 (693)
.+|..+.+.+ ..-......|+..|-...+|++|++.-.+...- +. ...|..+...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 5555555432 122233444555555555555555544433331 11 012334444444455555555555555
Q ss_pred hhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC--CCCHHHHH
Q 043637 470 QWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS--SLDVIICN 547 (693)
Q Consensus 470 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~ 547 (693)
.+..+.....--.+.+.....|+++.|.+.|+.+.+.++..-+.+...|..+|...|+.++....+.++. .++...-.
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l 286 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAEL 286 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHH
Confidence 4444333333334444555555555555555555555555555555555555555555555555555444 23333333
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 043637 548 SMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILL 586 (693)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 586 (693)
.+...-....-.+.|...+.+-.. -+|+...+..++.
T Consensus 287 ~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~ 323 (389)
T COG2956 287 MLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMD 323 (389)
T ss_pred HHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHH
Confidence 333333333333444444333333 2455555555553
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.33 E-value=3.6e-09 Score=97.70 Aligned_cols=194 Identities=12% Similarity=0.090 Sum_probs=89.4
Q ss_pred cCChhHHHhhhcCCCCC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC----CcccHHHHHHHHHhCCCHHHHHHHH
Q 043637 292 CGRLEDARGLLDQPDER---NIISWTSIVSGYAISGRIREARELFNEMPER----NVISWNAMLAGYTRSLLWKEALDFV 364 (693)
Q Consensus 292 ~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~ 364 (693)
.|++.+|+++..+..+. ....|..-+.+--+.|+.+.+-..+.+..++ +...+-+........|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 46677666665543332 1122333334444455555555555554441 2222333334444555555555555
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChh
Q 043637 365 FLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKV 444 (693)
Q Consensus 365 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 444 (693)
+++.+.+.. +.........+|.+.|++.....++..+.+.+.-.+...- .+ ...
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~------------------~l-------e~~ 230 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA------------------RL-------EQQ 230 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH------------------HH-------HHH
Confidence 555443321 2223333344444444444444444444443322211110 00 112
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcc
Q 043637 445 SWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEIN 511 (693)
Q Consensus 445 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 511 (693)
+|+.++.-....+..+.-...|+.....-+.++..-.+++.-+...|+.++|.++..+..+.+.+|+
T Consensus 231 a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 231 AWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred HHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 4555555555555555555566655444444444445555556666666666666666666555544
No 62
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1.9e-06 Score=88.89 Aligned_cols=132 Identities=14% Similarity=0.222 Sum_probs=98.3
Q ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 526 CCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 526 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
+.++.|.++-++... +..|..+..+-.+.|...+|++-|-+ .-|+..|.-+++.+.+.|.|++-..++..++
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344444444444433 34689999999999999999877643 2356789999999999999999999998887
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHH
Q 043637 606 CKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRL 672 (693)
Q Consensus 606 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 672 (693)
++ ..+|..+ +.|+-+|.+.++..+-++++ .-|+..-...+++-|...|.++.|+-.|..+
T Consensus 1161 kk-~~E~~id--~eLi~AyAkt~rl~elE~fi----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1161 KK-VREPYID--SELIFAYAKTNRLTELEEFI----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred Hh-hcCccch--HHHHHHHHHhchHHHHHHHh----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 64 6677666 67999999999998876665 3456666677777777777777776665543
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.31 E-value=1.4e-07 Score=94.68 Aligned_cols=132 Identities=14% Similarity=0.029 Sum_probs=111.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP-QLEHYECMIK 622 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~ 622 (693)
.|......+.+.++.++|...+.+... +.| ....|......+...|.+++|.+.|.... .+.| ++....++..
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHH
Confidence 566677788888999999988888877 556 45777777788889999999999999886 4555 4778899999
Q ss_pred HHHhcCChHHHHH--HHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCc
Q 043637 623 LYCRYGYMKELED--FVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPF 681 (693)
Q Consensus 623 ~~~~~g~~~~A~~--~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 681 (693)
++.+.|+..-|.. ++..+. .+.+...|..++..+.+.|+.++|...|..+.++++.+|.
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999998887777 888775 5667889999999999999999999999999999998885
No 64
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=1.9e-08 Score=90.99 Aligned_cols=148 Identities=18% Similarity=0.118 Sum_probs=101.0
Q ss_pred CHHHHHHHHhcCC----CC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHH
Q 043637 527 CLEYAIRVFKESS----SL-DVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFF 601 (693)
Q Consensus 527 ~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 601 (693)
++.-|.+.|+-+- .. .+.-..++...+.-..++++.+..++.+..-=..-|... ..+.++.+..|.+.+|.++|
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHH
Confidence 4455666665433 12 222344556666666778888888888777422223333 34668888899999999999
Q ss_pred HHhHHhcCCCCChhHH-HHHHHHHHhcCChHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCCccHHHHHHHHHhhcCC
Q 043637 602 DSMRCKYGIIPQLEHY-ECMIKLYCRYGYMKELEDFVNRMPFNPTV-PMLRKIFDKCRKNGYATLGEWAARRLNELNP 677 (693)
Q Consensus 602 ~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 677 (693)
-.+.. ..++ |..+| ..|.++|.+.|+++-|++++-++..+.+. ..+..+.+-|.+.+.+=-|-.++..+..++|
T Consensus 417 ~~is~-~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 417 IRISG-PEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hhhcC-hhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 87753 2333 44444 55778899999999999998888754443 3555667788898888888888888888888
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=1.4e-09 Score=101.68 Aligned_cols=200 Identities=15% Similarity=0.156 Sum_probs=110.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 043637 444 VSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYT 523 (693)
Q Consensus 444 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (693)
..+..+...+...|++++|.+.+++.....+.+...+..+...+...|+++.|...+++..+...
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--------------- 96 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP--------------- 96 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---------------
Confidence 44555666666666666666666666544444445555555555556666666665555554322
Q ss_pred hhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHH
Q 043637 524 KCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFD 602 (693)
Q Consensus 524 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (693)
.+...+..+...+...|++++|.+.+++..+....| ....+..+...+...|++++|...++
T Consensus 97 -----------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (234)
T TIGR02521 97 -----------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLT 159 (234)
T ss_pred -----------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 233344455555556666666666666655532122 22344445556666666666666666
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCC
Q 043637 603 SMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNP 677 (693)
Q Consensus 603 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 677 (693)
+..+ ..+.+...+..+...+...|++++|...+++.. .+.+...+......+...|+.++|....+.+.+..|
T Consensus 160 ~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 160 RALQ--IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHH--hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 6653 222234455566666666666666666666543 123334444455555566666666666666555443
No 66
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.26 E-value=1.3e-06 Score=87.12 Aligned_cols=534 Identities=14% Similarity=0.109 Sum_probs=258.2
Q ss_pred HHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCChhhHH
Q 043637 49 FQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTL 128 (693)
Q Consensus 49 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 128 (693)
+.+......|..|..+++.+.... .....|..+.+-|+..|+++.|.++|-+.. .++-.|..|.+.|+|..|.
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHH
Confidence 444455566777777777766554 234556777788888888888888876443 3566777788888888887
Q ss_pred HHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCC-C
Q 043637 129 ELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQN-K 207 (693)
Q Consensus 129 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~ 207 (693)
++-++.. |.......|..-..-+-..|.+.+|.+++-.+ | .| ...|.+|-+.|..+..+++.++... .
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p-----~~aiqmydk~~~~ddmirlv~k~h~d~ 880 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EP-----DKAIQMYDKHGLDDDMIRLVEKHHGDH 880 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-Cc-----hHHHHHHHhhCcchHHHHHHHHhChhh
Confidence 7765543 22333445555555566677777777665322 1 22 2346677777777777777665432 1
Q ss_pred CcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHH--------------HHHHHh
Q 043637 208 NAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIH--------------GVIIKI 273 (693)
Q Consensus 208 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~--------------~~~~~~ 273 (693)
=..+-..+..-+-..|+...|..-|-+... |...++.+..++-+++|.++- -+.+..
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksi 951 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSI 951 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhh
Confidence 122333444555555666666655544321 223333333333333333321 122222
Q ss_pred cCCCchHHHH------HHHHHHHHcCChhHHHhhhcCCCC-CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCc--ccH
Q 043637 274 DFEGDDVVLG------SLTEMYVKCGRLEDARGLLDQPDE-RNIISWTSIVSGYAISGRIREARELFNEMPERNV--ISW 344 (693)
Q Consensus 274 g~~~~~~~~~------~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~ 344 (693)
|-...+...| .-++..+..+.++-|.++-+-..+ +.......+..-+-..|++++|.+-+-+..+.|. .||
T Consensus 952 ggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntynitw 1031 (1636)
T KOG3616|consen 952 GGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITW 1031 (1636)
T ss_pred CcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchh
Confidence 2111111111 112223333444444433332222 2223344455556678888888777766655332 122
Q ss_pred HH-------------------HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHh
Q 043637 345 NA-------------------MLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRN 405 (693)
Q Consensus 345 ~~-------------------l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 405 (693)
.. .+..+.+.++|..|.++-+.-.+ ...| ..+..-.+.....|++..|+.++-...
T Consensus 1032 cqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~-~~l~--dv~tgqar~aiee~d~~kae~fllran-- 1106 (1636)
T KOG3616|consen 1032 CQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCE-DLLA--DVLTGQARGAIEEGDFLKAEGFLLRAN-- 1106 (1636)
T ss_pred hhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhCh-hhhH--HHHhhhhhccccccchhhhhhheeecC--
Confidence 21 12223333444444433322110 0111 122222233334455555554432222
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCC------------------CChhhHHHHHHHHHhcCChHHHHHHHH
Q 043637 406 DYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQR------------------RDKVSWNAVLTGYARRGQSEEAMTSFS 467 (693)
Q Consensus 406 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~ 467 (693)
+|++ .++.|...+.|..|+++..+.++. ..+..+-.-..-+-+.|++.+|...+-
T Consensus 1107 --kp~i-----~l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~gargvd~fvaqak~weq~gd~rkav~~~l 1179 (1636)
T KOG3616|consen 1107 --KPDI-----ALNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGARGVDGFVAQAKEWEQAGDWRKAVDALL 1179 (1636)
T ss_pred --CCch-----HHHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhccccccHHHHHHHHHHHhcccHHHHHHHHh
Confidence 4443 455667777788877776666552 133345555556677788888877776
Q ss_pred HhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHH
Q 043637 468 EMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICN 547 (693)
Q Consensus 468 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 547 (693)
++......+. .++..|. ++|-.+--+. .-...+.....+....+...|..+.|.+++-... .-.
T Consensus 1180 kinrdst~nd----~l~e~~~-----~kaadl~ikf--l~~d~nme~i~aa~~al~~~~~~e~aael~l~f~-----~~k 1243 (1636)
T KOG3616|consen 1180 KINRDSTDND----ALAEHCT-----EKAADLSIKF--LMGDENMEVIGAAGGALDEAGCHEAAAELLLLFD-----LSK 1243 (1636)
T ss_pred hhccCCCCcH----HHHHHHH-----HHHHhhhhhh--cCCccchhhHHhcchhhhcccccHHHHHHHHHhh-----hHH
Confidence 6633221111 1111110 0000000000 0000112222333333333333333333332110 011
Q ss_pred HHHHHHHhCCChHHH---------------HHHHHHHHHCCCCCCh---HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 043637 548 SMILGFCHNERGREA---------------LEVFGLMKKEGIKPDH---ITFHGILLACIHEGNVKLALQFFDSMRCKYG 609 (693)
Q Consensus 548 ~l~~~~~~~g~~~~A---------------~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 609 (693)
..|.++|+...+.+| .+.+++..+..-+.+. +-....+..+..+++|++|++.-. +..
T Consensus 1244 eaida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli~vdviaaidl~ien~qwdk~idtak----~qn 1319 (1636)
T KOG3616|consen 1244 EAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVDVIAAIDLMIENDQWDKAIDTAK----KQN 1319 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchhHHHHHHHHHhcccHHHHHHHHH----hcc
Confidence 123333333333333 3333333332222221 223345577788888888876543 247
Q ss_pred CCCChhHHHHHH-HHHHhcCChHHHHHHHHhCC
Q 043637 610 IIPQLEHYECMI-KLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 610 ~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~ 641 (693)
.+|-..-|..+. ..+.+.|+..+|+.++++-.
T Consensus 1320 ykpil~kyva~yaa~li~~~d~aq~lal~~q~g 1352 (1636)
T KOG3616|consen 1320 YKPILDKYVALYAAHLIHEGDLAQALALLEQHG 1352 (1636)
T ss_pred cHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhC
Confidence 777766665543 44678888888888888765
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=2.2e-08 Score=90.59 Aligned_cols=195 Identities=10% Similarity=0.046 Sum_probs=113.0
Q ss_pred HHHHHHHHcCChHHHHHHHHhhcCC-CChhhHHH-----HHHHHHhcCChHHHHHHHHHhhhCC--CCCHHHHHHHHHHh
Q 043637 416 ALLDMYRKCGNLRSARIWFYQMSQR-RDKVSWNA-----VLTGYARRGQSEEAMTSFSEMQWET--RPSKFTFETLLAAC 487 (693)
Q Consensus 416 ~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~--~p~~~~~~~ll~~~ 487 (693)
.|+-.|.+.+++.+|..+..+..+. |-....-. +..-........-|.+.|+-.-.++ ..+...-.++..++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 4555678888888887776665442 22111111 1111111222344555565554444 11222223334444
Q ss_pred cccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCC---HHHHHH-HHHHHHhCCChHHHH
Q 043637 488 ANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLD---VIICNS-MILGFCHNERGREAL 563 (693)
Q Consensus 488 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~-l~~~~~~~g~~~~A~ 563 (693)
.-..++++..-++..+...-..-|...+ .+.++++..|...+|+++|-.+..|+ ..+|.+ |.++|.+.++.+.|.
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHH
Confidence 4455677777777766664444344444 36788888888888888888777443 345544 567778888888776
Q ss_pred HHHHHHHHCCCCCChHHHHHHH-HHHhccCcHHHHHHHHHHhHHhcCCCCChhHH
Q 043637 564 EVFGLMKKEGIKPDHITFHGIL-LACIHEGNVKLALQFFDSMRCKYGIIPQLEHY 617 (693)
Q Consensus 564 ~~~~~m~~~g~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 617 (693)
.++-++.. +.+..+...+| +-|.+.+.+=-|.+.|+.+. ...|+++.|
T Consensus 449 ~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE---~lDP~pEnW 497 (557)
T KOG3785|consen 449 DMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELE---ILDPTPENW 497 (557)
T ss_pred HHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---ccCCCcccc
Confidence 65543322 23444555555 77888888888888888775 456777666
No 68
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=1.7e-11 Score=81.07 Aligned_cols=50 Identities=24% Similarity=0.427 Sum_probs=47.1
Q ss_pred CCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcC
Q 043637 207 KNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSF 256 (693)
Q Consensus 207 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 256 (693)
||+.+||++|++|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999874
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=1.2e-09 Score=114.55 Aligned_cols=243 Identities=11% Similarity=-0.037 Sum_probs=153.0
Q ss_pred CChHHHHHHHHhhcCC-C-ChhhHHHHHHHHHh---------cCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCCh
Q 043637 425 GNLRSARIWFYQMSQR-R-DKVSWNAVLTGYAR---------RGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSL 493 (693)
Q Consensus 425 ~~~~~a~~~~~~~~~~-~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 493 (693)
+.+++|...+.+.+.. | +...|..+..++.. .+++++|...+++.....+.+...+..+...+...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 3456777777777763 4 34455555544432 23467888888887777666777777777777788888
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC--CCC-HHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 043637 494 EQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS--SLD-VIICNSMILGFCHNERGREALEVFGLMK 570 (693)
Q Consensus 494 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 570 (693)
++|...+++..+.++. +...+..+..++...|++++|...+++.. .|+ ...+..++..+...|++++|...++++.
T Consensus 355 ~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 355 IVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 8888888888776543 45566667777888888888888887765 333 2233334445666777888888887776
Q ss_pred HCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCC
Q 043637 571 KEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ-LEHYECMIKLYCRYGYMKELEDFVNRMP----FNP 644 (693)
Q Consensus 571 ~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~ 644 (693)
+.. .|+. ..+..+..++...|++++|...++++.. ..|+ ......+...|++.| ++|...++++. ..+
T Consensus 434 ~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 434 SQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred Hhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 642 3543 4455566777778888888888877653 2333 333445555666666 36666555543 222
Q ss_pred CHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCC
Q 043637 645 TVPMLRKIFDKCRKNGYATLGEWAARRLNELNP 677 (693)
Q Consensus 645 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 677 (693)
..+.+ ....+.-+|+.+.+..+ +++.+.++
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhccch
Confidence 22333 44455556666666666 66655544
No 70
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.22 E-value=2.7e-07 Score=92.63 Aligned_cols=108 Identities=14% Similarity=-0.039 Sum_probs=91.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHh
Q 043637 581 FHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRK 658 (693)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 658 (693)
|......+.+.+..++|...+.+... -.+.....|......+...|..++|.+.|.... .+..++...+++..+.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 44445777888899999988888863 445567778888889999999999999998775 56678899999999999
Q ss_pred cCCccHHHH--HHHHHhhcCCCCCcchhhhhhcc
Q 043637 659 NGYATLGEW--AARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 659 ~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
.|+...|.. ++..+++++|.++.+|..||.++
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVF 764 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 998888877 99999999999999999999875
No 71
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=4.2e-11 Score=79.14 Aligned_cols=50 Identities=38% Similarity=0.642 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc
Q 043637 541 LDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIH 590 (693)
Q Consensus 541 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 590 (693)
||+.+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888764
No 72
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.21 E-value=3.6e-07 Score=94.14 Aligned_cols=621 Identities=11% Similarity=0.000 Sum_probs=321.6
Q ss_pred HHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCCCc-----ccHHHHHHHH
Q 043637 44 LYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDG-----GSWNAMLGAY 118 (693)
Q Consensus 44 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~li~~~ 118 (693)
.|..|...|+..-+...|...|+.+.+.+. .+........+.|+...+++.|..+.-...+.++ ..|-...-.+
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 455555556555566666677776666653 3555566667777777777777666443333221 1222233345
Q ss_pred HhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCch-hhHhHHHHHhhcCCCHHHH
Q 043637 119 TQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNV-ILESSLVDAYGKCMVMTDA 197 (693)
Q Consensus 119 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~g~~~~A 197 (693)
.+.++...|+.-|+...+.. +-|...|..+..+|.+.|++..|.++|....... |+. ...--..-.-+..|.+.+|
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHHHhhhHHHH
Confidence 56666666666666665543 4456666667777777777777777766655432 221 1111111223445666666
Q ss_pred HHHHhccCC---------C-CcccHHHHHHHHHhcCCchHHHHHHHHHH-------HCCCCCCHHhHHHHHHHhcCCCCc
Q 043637 198 RRMFDDIQN---------K-NAVSWNVIVRRYLVAGNGKEAVVMFFKML-------REDIRPLNFTFANALFACSFLSSP 260 (693)
Q Consensus 198 ~~~~~~~~~---------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~-------~~g~~p~~~~~~~ll~~~~~~~~~ 260 (693)
...+..+.. . -..++--+...+.-.|=...|.+.++.-+ .+...-+...|..+-++|
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac------ 723 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC------ 723 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH------
Confidence 666555431 0 01111111112222222223333332221 111111222222222221
Q ss_pred chhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCh---h---HHHhhhcCCCC--CCchhHHHHHHHHHh-------cC-
Q 043637 261 YEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRL---E---DARGLLDQPDE--RNIISWTSIVSGYAI-------SG- 324 (693)
Q Consensus 261 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~---~---~a~~~~~~~~~--~~~~~~~~li~~~~~-------~g- 324 (693)
.++-... .. .|+......+..-.-+.+.. + -+.+.+-.-.+ .+..+|..++..|.+ .+
T Consensus 724 ----~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~ 797 (1238)
T KOG1127|consen 724 ----YIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMK 797 (1238)
T ss_pred ----HHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcch
Confidence 1111111 00 11111111111111111111 1 00000000000 123455555544443 11
Q ss_pred CHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHH
Q 043637 325 RIREARELFNEMPE---RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGF 401 (693)
Q Consensus 325 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 401 (693)
+...|+..+....+ .+..+||.|.-. ...|.+.-|...|-+-+.. .+-...+|..+--.+....+++.|...+..
T Consensus 798 ~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~ 875 (1238)
T KOG1127|consen 798 DACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSS 875 (1238)
T ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHh
Confidence 23356666665544 566777777655 5556666666666544332 122445555566667778888888888887
Q ss_pred HHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhh--cC--C---CChhhHHHHHHHHHhcCChHHHHHHHHHhh----
Q 043637 402 IHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQM--SQ--R---RDKVSWNAVLTGYARRGQSEEAMTSFSEMQ---- 470 (693)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~--~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---- 470 (693)
.+.-. |.+...+-.........|+.-++...+... .. + ++..-|-+.......+|+.++-+...+++.
T Consensus 876 ~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~ 954 (1238)
T KOG1127|consen 876 VQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL 954 (1238)
T ss_pred hhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence 76543 345555555444555667666665555541 11 1 233334444444556666666555544442
Q ss_pred ------hCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHH-hCCCcchhHHH----HHHHHHHhhCCHHHHHHHHhcCC
Q 043637 471 ------WETRPSKFTFETLLAACANISSLEQGKQIHCFVIR-NCYEINVVCRG----ALVEVYTKCCCLEYAIRVFKESS 539 (693)
Q Consensus 471 ------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~----~l~~~~~~~~~~~~A~~~~~~~~ 539 (693)
...+.....|........+.+.++.|.....+++. ...+.+...|+ .....++..|.++.|..-+....
T Consensus 955 al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~ 1034 (1238)
T KOG1127|consen 955 ALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEW 1034 (1238)
T ss_pred HHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccc
Confidence 22244556777777777777777777777666554 22233444444 33445666788887776665544
Q ss_pred -CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh
Q 043637 540 -SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH----ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQL 614 (693)
Q Consensus 540 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 614 (693)
..+..+-..-+.. .-.|+++++.+.|++... +.-+. .....++.+....+.-+.|...+-+... -.+|+.
T Consensus 1035 ~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLs--is~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~--ls~~~~ 1109 (1238)
T KOG1127|consen 1035 MEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALS--ISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS--LSKVQA 1109 (1238)
T ss_pred hhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhh--hcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH--hCccch
Confidence 3333332222222 446789999999999887 33222 3344555666677788888888888774 556666
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC---C----CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhh
Q 043637 615 EHYECMIKLYCRYGYMKELEDFVNRM---P----FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITT 687 (693)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A~~~~~~~---~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 687 (693)
...-.|...+.-..+-.....+++++ . ..-.++.... ..+.+.|+-....+.+++..-.+|.+|..+-.|.
T Consensus 1110 ~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e--~i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~ 1187 (1238)
T KOG1127|consen 1110 SSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKE--LIYALQGRSVAVKKQIQRAVHSNPGDPALWSLLS 1187 (1238)
T ss_pred hhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHH--HHHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 66655555554433333333333333 1 1223333322 3456788888999999999999999999998887
Q ss_pred hcc
Q 043637 688 NRF 690 (693)
Q Consensus 688 ~~y 690 (693)
+-|
T Consensus 1188 vry 1190 (1238)
T KOG1127|consen 1188 VRY 1190 (1238)
T ss_pred HHH
Confidence 543
No 73
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=4.8e-07 Score=88.05 Aligned_cols=447 Identities=11% Similarity=0.006 Sum_probs=216.9
Q ss_pred HHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCC-CCchhhHhHHHHHhhcCCC
Q 043637 115 LGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGF-CGNVILESSLVDAYGKCMV 193 (693)
Q Consensus 115 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g~ 193 (693)
++-+.+.|++++|.....++...+ +-|...+..=+-++.+.+.++.|..+.+. .+. ..+...+-.=.-+..+.+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGALLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchhhhcchhhHHHHHHHHHccc
Confidence 344556667777777777776654 44555666666666777777777744332 111 1111111111222335677
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH-hHHHHHHHhcCCCCcchhHHHHHHHHH
Q 043637 194 MTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNF-TFANALFACSFLSSPYEGMQIHGVIIK 272 (693)
Q Consensus 194 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~ 272 (693)
.++|+..++...+.+..+...-...+.+.|++++|+++|+.+.+++..--.. .-..++.+... . ....+..
T Consensus 95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l-~~~~~q~ 166 (652)
T KOG2376|consen 95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------L-QVQLLQS 166 (652)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------h-hHHHHHh
Confidence 7777777774444444455555566677777777777777776654321111 11111110000 0 0001111
Q ss_pred hcCCC--chHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhC-CCCCc--------
Q 043637 273 IDFEG--DDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEM-PERNV-------- 341 (693)
Q Consensus 273 ~g~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-------- 341 (693)
....| +...+-...-.+...|++.+|++++++. +++..+- .+.|.
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA------------------------~~~~~e~l~~~d~~eEeie~e 222 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKA------------------------LRICREKLEDEDTNEEEIEEE 222 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH------------------------HHHHHHhhcccccchhhHHHH
Confidence 11111 1111111222333445555554444422 1111000 11110
Q ss_pred --ccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH---HHhcccchhh--HHHH-----------HHHHH
Q 043637 342 --ISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILN---VCAGLSEIKM--GKEV-----------HGFIH 403 (693)
Q Consensus 342 --~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~---~~~~~~~~~~--a~~~-----------~~~~~ 403 (693)
..-..+...+-..|+..+|..++....+.. .+|........+ ++..-.++-. .... +..+.
T Consensus 223 l~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L 301 (652)
T KOG2376|consen 223 LNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKL 301 (652)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHH
Confidence 011123334556777778888777776654 233322221111 1111111111 0111 11111
Q ss_pred HhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHH--HhcCChHHHHHHHHHhhhCC-CCCHHHH
Q 043637 404 RNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGY--ARRGQSEEAMTSFSEMQWET-RPSKFTF 480 (693)
Q Consensus 404 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~-~p~~~~~ 480 (693)
.......+..-+.++..|. +..+.+.+.....-.......+..++... ++...+.++.+++....... .-.....
T Consensus 302 s~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~ 379 (652)
T KOG2376|consen 302 SKKQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVL 379 (652)
T ss_pred HHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHH
Confidence 1111112222233333332 33334422222222221223344444332 22334677777777766554 2234566
Q ss_pred HHHHHHhcccCChHHHHHHHH--------HHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC------CCCHH--
Q 043637 481 ETLLAACANISSLEQGKQIHC--------FVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS------SLDVI-- 544 (693)
Q Consensus 481 ~~ll~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~-- 544 (693)
..++......|+++.|.+++. .+.+.+. .+.+...++..+.+.++-+.|..++.+.. .+...
T Consensus 380 L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l 457 (652)
T KOG2376|consen 380 LLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIAL 457 (652)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHH
Confidence 666777888999999999988 3333333 44556677777887777666666665543 11212
Q ss_pred --HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHh
Q 043637 545 --ICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSM 604 (693)
Q Consensus 545 --~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 604 (693)
++..++..-.+.|+.++|..+++++.+. -++|..+...++.+|++. +++.|..+-..+
T Consensus 458 ~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 458 LSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 3344444455779999999999999884 244678888888888765 567776665443
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.21 E-value=2.2e-07 Score=91.41 Aligned_cols=443 Identities=11% Similarity=0.005 Sum_probs=215.5
Q ss_pred CChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHH
Q 043637 122 GFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMF 201 (693)
Q Consensus 122 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 201 (693)
+++.+.+...+...+ +.+-...|.....-.+...|+.++|....+...... ..+.+.|..+.-.+-...++++|++.|
T Consensus 21 kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 344444444444433 122223333333333444555555555555444432 223345555555555555566666665
Q ss_pred hccCC---CCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH-HhHHHHHHHhcCCCCcchhHHHHHHHHHhc-CC
Q 043637 202 DDIQN---KNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLN-FTFANALFACSFLSSPYEGMQIHGVIIKID-FE 276 (693)
Q Consensus 202 ~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~ 276 (693)
..... .|...|.-+.-.-++.|+++........+.+. .|+. ..|..+..+..-.|+...|..+.+...+.. ..
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 55442 23334444444445555555555555555442 2332 244555555555555666665555554443 23
Q ss_pred CchHHHHHHH------HHHHHcCChhHHHhhhcCCCCC--C-chhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcccHH
Q 043637 277 GDDVVLGSLT------EMYVKCGRLEDARGLLDQPDER--N-IISWTSIVSGYAISGRIREARELFNEMPE--RNVISWN 345 (693)
Q Consensus 277 ~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~ 345 (693)
|+...+.... ....+.|.+++|.+.+.+.... | ...-..-...+.+.++.++|..++..+.. ||...|+
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy 256 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYY 256 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHH
Confidence 3333333221 2344566667666666554432 1 12223345566777777788877777766 4444444
Q ss_pred HHHH-HHHhCCCHHHHH-HHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 043637 346 AMLA-GYTRSLLWKEAL-DFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRK 423 (693)
Q Consensus 346 ~l~~-~~~~~~~~~~a~-~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 423 (693)
..+. ++....+.-+++ .+|....+. .+-....-..-+.......-.+....++..+.+.|+++-.....++-.--.+
T Consensus 257 ~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k 335 (700)
T KOG1156|consen 257 EGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK 335 (700)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH
Confidence 4433 333333333333 444444332 1111111111111111222233344555555666655432222222111000
Q ss_pred cCChHHHHHHHHhhcC--------------CCChhhH--HHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHh
Q 043637 424 CGNLRSARIWFYQMSQ--------------RRDKVSW--NAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAAC 487 (693)
Q Consensus 424 ~~~~~~a~~~~~~~~~--------------~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~ 487 (693)
..-+++-.-.+...+. .|....| -.++..+-..|+++.|...++.....-+.-..-|..-.+.+
T Consensus 336 ~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~ 415 (700)
T KOG1156|consen 336 VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIF 415 (700)
T ss_pred hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 1101111111111111 1233333 34667777888888888888877655333334555556777
Q ss_pred cccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHH----------HHHHH--HHHHHh
Q 043637 488 ANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVI----------ICNSM--ILGFCH 555 (693)
Q Consensus 488 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~l--~~~~~~ 555 (693)
...|+.+.|..++++..+... +|...-+.-+....++.+.++|.++.....+.+.. .|-.+ ..+|.+
T Consensus 416 kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r 494 (700)
T KOG1156|consen 416 KHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLR 494 (700)
T ss_pred HhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHH
Confidence 888888888888888776433 34444445666677788888888877665532211 22222 455677
Q ss_pred CCChHHHHHHHHHHH
Q 043637 556 NERGREALEVFGLMK 570 (693)
Q Consensus 556 ~g~~~~A~~~~~~m~ 570 (693)
.|++..|++-|..+.
T Consensus 495 ~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 495 QNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHHHhhHH
Confidence 777777766555443
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.20 E-value=5.7e-09 Score=97.52 Aligned_cols=198 Identities=14% Similarity=0.037 Sum_probs=140.9
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHHhhcCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 043637 409 SNIFVSNALLDMYRKCGNLRSARIWFYQMSQR-R-DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAA 486 (693)
Q Consensus 409 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~ 486 (693)
.....+..+...+...|++++|...+.+.+.. | +...+..+...+...|++++|.+.+++.....+.+...+..+...
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 34567788899999999999999999887763 3 566788888999999999999999999887766667778888888
Q ss_pred hcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 043637 487 CANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVF 566 (693)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 566 (693)
+...|++++|...+++..+....+ .....+..+...+...|++++|...+
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYP------------------------------QPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccc------------------------------cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888999999999888887632111 11223444555666667777777777
Q ss_pred HHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 567 GLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 567 ~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
++..+ ..|+ ...+..+...+...|++++|...+++..+. .+.+...+..++..+...|+.++|..+.+.+
T Consensus 159 ~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 159 TRALQ--IDPQRPESLLELAELYYLRGQYKDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHH--hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 76666 3343 355666666777777777777777776642 3334555556666666777777777665554
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=1.4e-09 Score=97.01 Aligned_cols=238 Identities=13% Similarity=0.061 Sum_probs=158.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhcCC-CChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCCh
Q 043637 415 NALLDMYRKCGNLRSARIWFYQMSQR-RDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSL 493 (693)
Q Consensus 415 ~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 493 (693)
+.+..+|.+.|.+.+|+..+...+.+ |.+.||-.|-+.|.+.++++.|+.++.+-....+-+......+.+.+...++.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 45667777777777777777666653 56666777777777777777777777665544333333333444444445555
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 043637 494 EQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEG 573 (693)
Q Consensus 494 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 573 (693)
++|.++++.+.+.. +.++.....+...|.-.++.+-|+..++++.+.|
T Consensus 307 ~~a~~lYk~vlk~~--------------------------------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG 354 (478)
T KOG1129|consen 307 EDALQLYKLVLKLH--------------------------------PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG 354 (478)
T ss_pred HHHHHHHHHHHhcC--------------------------------CccceeeeeeeeccccCCChHHHHHHHHHHHHhc
Confidence 55555555444421 2333444445566677778888888888888877
Q ss_pred CCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhH
Q 043637 574 IKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ--LEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPML 649 (693)
Q Consensus 574 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 649 (693)
+. ++..|+.+.-+|.-.+++|-++.-|++.... .-.|+ .++|..+.......|++.-|.+.|+-.. .+.....+
T Consensus 355 ~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~eal 432 (478)
T KOG1129|consen 355 AQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEAL 432 (478)
T ss_pred CC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHH
Confidence 53 5667777777888888888888888887752 33344 4567777788888888888888887664 34455677
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhh
Q 043637 650 RKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKIT 686 (693)
Q Consensus 650 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 686 (693)
+.+.-.-.+.|+.++|+..+..+..+.|+-.....+|
T Consensus 433 nNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 433 NNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred HhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 7777777788888888888888888888654444433
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=1.3e-08 Score=97.26 Aligned_cols=192 Identities=8% Similarity=-0.135 Sum_probs=113.3
Q ss_pred HHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHh
Q 043637 479 TFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCH 555 (693)
Q Consensus 479 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 555 (693)
.|......+...|+.+.|...|++..+..++ +...|+.+...+...|++++|...|++.. +.+...|..+..++..
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3444455555666666666666666554432 45566666666666666666666666554 3345567777777778
Q ss_pred CCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH--H
Q 043637 556 NERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKE--L 633 (693)
Q Consensus 556 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~--A 633 (693)
.|++++|++.+++..+ ..|+..........+...++.++|.+.+++... ...|+...+ . ..+...|+..+ +
T Consensus 145 ~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~--~~~~~lg~~~~~~~ 217 (296)
T PRK11189 145 GGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWGW-N--IVEFYLGKISEETL 217 (296)
T ss_pred CCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccHH-H--HHHHHccCCCHHHH
Confidence 8888888888888877 556543222222233456678888888866553 333333221 2 22233444433 3
Q ss_pred HHHHHhCC-C-----CCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCC
Q 043637 634 EDFVNRMP-F-----NPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 634 ~~~~~~~~-~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 678 (693)
...+.+.. . +.....|..++..+...|++++|...|+++++++|.
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 32222221 1 112346777788888888888888888888888863
No 78
>PRK12370 invasion protein regulator; Provisional
Probab=99.15 E-value=7.4e-09 Score=108.56 Aligned_cols=243 Identities=9% Similarity=-0.068 Sum_probs=154.1
Q ss_pred cchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHH---------cCChHHHHHHHHhhcCC-C-ChhhHHHHHHHHHhcCC
Q 043637 390 SEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRK---------CGNLRSARIWFYQMSQR-R-DKVSWNAVLTGYARRGQ 458 (693)
Q Consensus 390 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~ 458 (693)
++.+.|...+++..+.. +.+...+..+..++.. .+++++|...+.+.+.. | +..++..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45667777777776553 2334455555544432 23367777777776662 3 55667777777778888
Q ss_pred hHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcC
Q 043637 459 SEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKES 538 (693)
Q Consensus 459 ~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 538 (693)
+++|...|++.....+.+...+..+..++...|++++|...+++..+..+.. ...+..++..+...|++++|...+++.
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~-~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR-AAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 8888888888777766666777777778888888888888888887755442 222223344455577788888877765
Q ss_pred C---CC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHH-HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 043637 539 S---SL-DVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHIT-FHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ 613 (693)
Q Consensus 539 ~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 613 (693)
. +| ++..+..+..++...|+.++|...++++.. ..|+... .+.+...|...| +.|...++.+.+.....+.
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN 508 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence 4 23 344566677777788888888888877666 3555433 344445666666 4677767666653333333
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 614 LEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 614 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
...+ +...|.-.|+.+.+..+ +++.
T Consensus 509 ~~~~--~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 509 NPGL--LPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred CchH--HHHHHHHHhhhHHHHHH-HHhh
Confidence 2222 44455666777766666 6665
No 79
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=2.5e-09 Score=95.56 Aligned_cols=203 Identities=13% Similarity=0.034 Sum_probs=155.8
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCC
Q 043637 481 ETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNE 557 (693)
Q Consensus 481 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g 557 (693)
..+.++|.+.|-+.+|+..++...+. .|-+.+|-.|..+|.+..+.+.|+.++.+.. +-|+.....+.+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 34455555555555555555544442 2445566666677777777777777777665 445555666777888889
Q ss_pred ChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 043637 558 RGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDF 636 (693)
Q Consensus 558 ~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 636 (693)
+.++|.++++...+ ..| +......+...|.-.++++-|+.+++++.+ .|. .+++.|..+.-+|.-.+++|-++..
T Consensus 305 ~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 305 QQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred hHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999998 455 456666777889999999999999999996 565 5778899999999999999999999
Q ss_pred HHhCC---CCCC--HHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhc
Q 043637 637 VNRMP---FNPT--VPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNR 689 (693)
Q Consensus 637 ~~~~~---~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 689 (693)
|++.. .+|+ ...|-.+.......||+..|.+.++.++.-+|++..++++|+-+
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL 438 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVL 438 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHH
Confidence 98775 2333 34677788888889999999999999999999999999999854
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.15 E-value=5.2e-08 Score=97.06 Aligned_cols=149 Identities=21% Similarity=0.253 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCccc-HHHHHHHHHhCC
Q 043637 280 VVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPE---RNVIS-WNAMLAGYTRSL 355 (693)
Q Consensus 280 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~-~~~l~~~~~~~~ 355 (693)
.+...+...|...|+++.|..+++ .|++++.+... +.+.+ .+.+...|...+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k------------------------~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~ 255 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCK------------------------QALRILEKTSGLKHLVVASMLNILALVYRSLG 255 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHH------------------------HHHHHHHHccCccCHHHHHHHHHHHHHHHHhc
Confidence 445557777778888887776666 34444322222 22221 223556677788
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHH
Q 043637 356 LWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFY 435 (693)
Q Consensus 356 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 435 (693)
++++|..+|+++... .+.......+--..+++.|..+|.+.|++++|...+
T Consensus 256 k~~eAv~ly~~AL~i----------------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~- 306 (508)
T KOG1840|consen 256 KYDEAVNLYEEALTI----------------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYC- 306 (508)
T ss_pred cHHHHHHHHHHHHHH----------------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHH-
Confidence 888888888877541 111111111222345666777778888888874443
Q ss_pred hhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCH-HHHHHHHHHhcccCChHHHHHHHHHHHH
Q 043637 436 QMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSK-FTFETLLAACANISSLEQGKQIHCFVIR 505 (693)
Q Consensus 436 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 505 (693)
+.|++++++......|.. ..++.+...|+..++++.|..+++...+
T Consensus 307 ------------------------e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 307 ------------------------ERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred ------------------------HHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 334555555211112222 2334445556666666666666654443
No 81
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.14 E-value=6.9e-06 Score=82.06 Aligned_cols=87 Identities=9% Similarity=0.038 Sum_probs=51.3
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--------------------hhHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 043637 583 GILLACIHEGNVKLALQFFDSMRCKYGIIPQ--------------------LEHYECMIKLYCRYGYMKELEDFVNRMPF 642 (693)
Q Consensus 583 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~--------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 642 (693)
..|+++++...|.+|.++-++..- ...|. +. ....++.+...+++++|++.-++-..
T Consensus 1244 eaida~~~~eewakakqvake~~p--~~~~~idk~yke~lknegkl~eli~vd-viaaidl~ien~qwdk~idtak~qny 1320 (1636)
T KOG3616|consen 1244 EAIDAFCEAEEWAKAKQVAKELDP--EMEDEIDKHYKEFLKNEGKLDELIDVD-VIAAIDLMIENDQWDKAIDTAKKQNY 1320 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCc--hhhHHHHHHHHHHHhccCccccccchh-HHHHHHHHHhcccHHHHHHHHHhccc
Confidence 346788888888888877665531 22221 11 12345778888888888877665443
Q ss_pred CCCHHhHHHHHH-HHHhcCCccHHHHHHHHH
Q 043637 643 NPTVPMLRKIFD-KCRKNGYATLGEWAARRL 672 (693)
Q Consensus 643 ~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~ 672 (693)
+|-..-|-.+.. .+.+.|+..+|...+++-
T Consensus 1321 kpil~kyva~yaa~li~~~d~aq~lal~~q~ 1351 (1636)
T KOG3616|consen 1321 KPILDKYVALYAAHLIHEGDLAQALALLEQH 1351 (1636)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 333222222222 233578888888777654
No 82
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=4.8e-06 Score=84.24 Aligned_cols=523 Identities=10% Similarity=0.054 Sum_probs=268.3
Q ss_pred hhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCC-----------CCcccHHH-HHHHHH
Q 043637 52 CASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPE-----------RDGGSWNA-MLGAYT 119 (693)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~-li~~~~ 119 (693)
|..-|+.+.|.+-++.+. +..+|..+.+.|.+..++|-|.-.+-.|.. .+..--.+ ......
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAi 811 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAI 811 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHH
Confidence 456778888777666553 346788888888888888888777766642 12211122 222234
Q ss_pred hCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHH
Q 043637 120 QNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARR 199 (693)
Q Consensus 120 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 199 (693)
+-|..++|..+|.+-++. ..+=+.|...|.+++|.++-+.--+..+. .||.....-+-..+|.+.|++
T Consensus 812 eLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHH
Confidence 667888888888877653 34445666788888888876543332222 344455555566788888888
Q ss_pred HHhccCC-----------------------CCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcC
Q 043637 200 MFDDIQN-----------------------KNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSF 256 (693)
Q Consensus 200 ~~~~~~~-----------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 256 (693)
.|+.... .|...|.-....+-..|+.+.|+.+|...+. |.++++..|-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEee
Confidence 8776532 2344455555555566777777777776643 5667777788
Q ss_pred CCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcC------------
Q 043637 257 LSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISG------------ 324 (693)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g------------ 324 (693)
.|+.++|.++-++ ..|....-.|.+.|-..|++.+|...|-+... +...|+.|-.++
T Consensus 951 qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa-----fsnAIRlcKEnd~~d~L~nlal~s 1019 (1416)
T KOG3617|consen 951 QGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA-----FSNAIRLCKENDMKDRLANLALMS 1019 (1416)
T ss_pred ccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHhcCHHHHHHHHHhhc
Confidence 8888888877665 33555566677888888888888877754331 222222221111
Q ss_pred ---CHHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHHHHHH--------HHHcCCCC--CHhhHHHHHHHHhcccc
Q 043637 325 ---RIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFL--------MRKTTKDI--DQVTLGLILNVCAGLSE 391 (693)
Q Consensus 325 ---~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------m~~~~~~p--~~~~~~~ll~~~~~~~~ 391 (693)
+.-.|-+.|++..- -+...+..|-+.|.+.+|+++-=+ +....+.| |+...+.....++...+
T Consensus 1020 ~~~d~v~aArYyEe~g~----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~q 1095 (1416)
T KOG3617|consen 1020 GGSDLVSAARYYEELGG----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQ 1095 (1416)
T ss_pred CchhHHHHHHHHHHcch----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHH
Confidence 12222333333321 112223445566666666554211 12222222 34444444445555556
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC-C----CCh----hhHHHHHHHHHhcCChHHH
Q 043637 392 IKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ-R----RDK----VSWNAVLTGYARRGQSEEA 462 (693)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~----~~~----~~~~~l~~~~~~~~~~~~a 462 (693)
++.|..++-...+. ..-+. +|+..++.-. +.+-+++. . |+. .....+...|.++|.+..|
T Consensus 1096 yekAV~lL~~ar~~---------~~Alq-lC~~~nv~vt-ee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~A 1164 (1416)
T KOG3617|consen 1096 YEKAVNLLCLAREF---------SGALQ-LCKNRNVRVT-EEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAA 1164 (1416)
T ss_pred HHHHHHHHHHHHHH---------HHHHH-HHhcCCCchh-HHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHH
Confidence 66665555443321 11111 2222233222 22222222 1 111 2344555667777777766
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHH-------------HHHHHHhCCCcchhHHHHHHHHHHhhCCHH
Q 043637 463 MTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQI-------------HCFVIRNCYEINVVCRGALVEVYTKCCCLE 529 (693)
Q Consensus 463 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 529 (693)
-+-|.+.-.. ...++++.+.|+.++..-+ -+-+.......++.+...++..|.+..-++
T Consensus 1165 tKKfTQAGdK--------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd 1236 (1416)
T KOG3617|consen 1165 TKKFTQAGDK--------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFD 1236 (1416)
T ss_pred HHHHhhhhhH--------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHH
Confidence 6655543211 1233444455554432110 011112233344555555555555544444
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHH----------HHHHh-ccCcHHHHH
Q 043637 530 YAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGI----------LLACI-HEGNVKLAL 598 (693)
Q Consensus 530 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l----------~~~~~-~~g~~~~A~ 598 (693)
.--.+|+......+.-|..+-.+ .|-.++|-+.+.+...++ -....++.| ++... -..+..+.+
T Consensus 1237 ~LanFY~~cAqiEiee~q~ydKa---~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i 1311 (1416)
T KOG3617|consen 1237 HLANFYKSCAQIEIEELQTYDKA---MGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGI 1311 (1416)
T ss_pred HHHHHHHHHHHhhHHHHhhhhHH---hHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 44333333221111111111111 122445555555554432 111122222 21111 112445555
Q ss_pred HHHHHhHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 599 QFFDSMRCKYGIIP----QLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 599 ~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
.-.+.|.++ ..-| -...|..||+.|....++..|-+.+++|.
T Consensus 1312 ~qc~~llee-p~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~ 1357 (1416)
T KOG3617|consen 1312 RQCTTLLEE-PILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQ 1357 (1416)
T ss_pred HHHHHHhhC-cCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHh
Confidence 555555543 2222 24567778888888888888888888775
No 83
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.10 E-value=2.8e-07 Score=93.19 Aligned_cols=279 Identities=11% Similarity=0.016 Sum_probs=176.7
Q ss_pred HHHHHcCChhHHHhhhcCCCC--CC-chhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcccHHHHHHHHH-h-----CC
Q 043637 287 EMYVKCGRLEDARGLLDQPDE--RN-IISWTSIVSGYAISGRIREARELFNEMPE--RNVISWNAMLAGYT-R-----SL 355 (693)
Q Consensus 287 ~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~-~-----~~ 355 (693)
..+...|++++|++.+++... .| ..........+.+.|+.++|..++..+.+ |+...|...+..+. . ..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 345667888888887766444 23 23455666777788888888888888876 44444444333332 1 22
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccch-hhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHH
Q 043637 356 LWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEI-KMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWF 434 (693)
Q Consensus 356 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 434 (693)
+.+....+|+++...- |.......+.-.+.....+ ..+..++..+...|+|+ +++.+-..|....+..-...++
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 4667777888776543 4333333332222222222 23455566666677654 3444444454333333333333
Q ss_pred HhhcC-----------------CCChh--hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHH
Q 043637 435 YQMSQ-----------------RRDKV--SWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQ 495 (693)
Q Consensus 435 ~~~~~-----------------~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 495 (693)
..... .|... ++.-+...|-..|++++|++.+++.....+.....|..-.+.+-+.|++++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHH
Confidence 33211 12222 345567778889999999999998887765557788888889999999999
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHH----------HH--HHHHHHHHhCCChHHHH
Q 043637 496 GKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVI----------IC--NSMILGFCHNERGREAL 563 (693)
Q Consensus 496 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~--~~l~~~~~~~g~~~~A~ 563 (693)
|.+.++..+..... |...-+-.+..+.++|+.++|.+++....+++.. .| .....+|.+.|++..|+
T Consensus 247 Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 247 AAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999988886554 6667777788888999999999988877744411 22 34567888999988888
Q ss_pred HHHHHHHH
Q 043637 564 EVFGLMKK 571 (693)
Q Consensus 564 ~~~~~m~~ 571 (693)
+.|..+.+
T Consensus 326 k~~~~v~k 333 (517)
T PF12569_consen 326 KRFHAVLK 333 (517)
T ss_pred HHHHHHHH
Confidence 77766544
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.09 E-value=7.2e-06 Score=81.08 Aligned_cols=435 Identities=13% Similarity=0.037 Sum_probs=246.4
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCC---CCcccHHHHHHHHHhcCCchHHH
Q 043637 153 SAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQN---KNAVSWNVIVRRYLVAGNGKEAV 229 (693)
Q Consensus 153 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 229 (693)
|-..+++....+..+.+.+ +.+....+.....-.+...|+-++|........+ .+.++|..+.-.+-...++++|+
T Consensus 17 ~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHH
Confidence 3456677777777777776 3344444544444455677899999988887765 45667888888888888999999
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCC
Q 043637 230 VMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERN 309 (693)
Q Consensus 230 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 309 (693)
+.|...... .||... ++.-+.-.-+.-|+++
T Consensus 96 Kcy~nAl~~--~~dN~q----------------------------------ilrDlslLQ~QmRd~~------------- 126 (700)
T KOG1156|consen 96 KCYRNALKI--EKDNLQ----------------------------------ILRDLSLLQIQMRDYE------------- 126 (700)
T ss_pred HHHHHHHhc--CCCcHH----------------------------------HHHHHHHHHHHHHhhh-------------
Confidence 999988763 444322 1111111111112222
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHhhHHHHHH-
Q 043637 310 IISWTSIVSGYAISGRIREARELFNEMPE---RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTK-DIDQVTLGLILN- 384 (693)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~- 384 (693)
.....-....+ .....|.....++.-.|++..|..+++...+... .|+...|.....
T Consensus 127 ------------------~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~ 188 (700)
T KOG1156|consen 127 ------------------GYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELL 188 (700)
T ss_pred ------------------hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence 11111111111 2334555566666666777777777766665542 455544433222
Q ss_pred -----HHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCC-CChhhHHHHH-HHHHhcC
Q 043637 385 -----VCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQR-RDKVSWNAVL-TGYARRG 457 (693)
Q Consensus 385 -----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~l~-~~~~~~~ 457 (693)
.....|..+.+.+.+...... +......--.-...+.+.+++++|..++...+.+ ||...|.... .++.+-.
T Consensus 189 Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~ 267 (700)
T KOG1156|consen 189 LYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIK 267 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHh
Confidence 223455555555544433221 1111122233455677888888887777777663 6666655544 3343333
Q ss_pred ChHHHH-HHHHHhhhCC----CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCH---H
Q 043637 458 QSEEAM-TSFSEMQWET----RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCL---E 529 (693)
Q Consensus 458 ~~~~a~-~~~~~~~~~~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~ 529 (693)
+.-+++ .+|......- .|-....+. .....-.+....++....+.|+.+-.....+ .|...... +
T Consensus 268 d~~~~lk~ly~~ls~~y~r~e~p~Rlplsv----l~~eel~~~vdkyL~~~l~Kg~p~vf~dl~S---Lyk~p~k~~~le 340 (700)
T KOG1156|consen 268 DMLEALKALYAILSEKYPRHECPRRLPLSV----LNGEELKEIVDKYLRPLLSKGVPSVFKDLRS---LYKDPEKVAFLE 340 (700)
T ss_pred hhHHHHHHHHHHHhhcCcccccchhccHHH----hCcchhHHHHHHHHHHHhhcCCCchhhhhHH---HHhchhHhHHHH
Confidence 333333 5555543332 222222221 1222333444455566666665543222222 22211111 1
Q ss_pred H-HHHHHhc--------------CCCCCHHHHH--HHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhcc
Q 043637 530 Y-AIRVFKE--------------SSSLDVIICN--SMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHE 591 (693)
Q Consensus 530 ~-A~~~~~~--------------~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~ 591 (693)
+ +..+... ..+|....|. -++..+-+.|+++.|...++...+ -.|+. .-|..-.+.+...
T Consensus 341 ~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~ 418 (700)
T KOG1156|consen 341 KLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHA 418 (700)
T ss_pred HHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhc
Confidence 1 1111111 1145555554 467788899999999999999998 46765 5565666899999
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HH--------hHH--HHHHHHHhcC
Q 043637 592 GNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPT-VP--------MLR--KIFDKCRKNG 660 (693)
Q Consensus 592 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~--------~~~--~l~~~~~~~g 660 (693)
|+++.|..++++..+ -..||..+-..-+.-..++++.++|..++......+. .. .|- .-+.+|.+.|
T Consensus 419 G~l~eAa~~l~ea~e--lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~ 496 (700)
T KOG1156|consen 419 GLLDEAAAWLDEAQE--LDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQN 496 (700)
T ss_pred CChHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHH
Confidence 999999999999975 4566766666777888899999999999877752221 11 222 2245677777
Q ss_pred CccHHHH
Q 043637 661 YATLGEW 667 (693)
Q Consensus 661 ~~~~A~~ 667 (693)
.+.+|..
T Consensus 497 k~g~ALK 503 (700)
T KOG1156|consen 497 KLGLALK 503 (700)
T ss_pred HHHHHHH
Confidence 7766654
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.04 E-value=9.4e-08 Score=81.78 Aligned_cols=193 Identities=12% Similarity=0.059 Sum_probs=106.8
Q ss_pred HHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHH
Q 043637 485 AACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGRE 561 (693)
Q Consensus 485 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~ 561 (693)
-.|...|+...|..-+++..+..+. +..++..+...|.+.|+.+.|.+.|++.. +.+-.+.|....-+|..|++++
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHH
Confidence 3344444444444444444443322 33444444555555555555555554433 3344556666666666677777
Q ss_pred HHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 562 ALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 562 A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
|...|++....-.-|. ..+|..+..+..+.|+.+.|...|++..+ -.+-.+.....+.+...+.|++-.|..+++..
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 7777776666322222 25666666666667777777777776664 23333445566666667777777777666665
Q ss_pred CC--CCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 641 PF--NPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 641 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
.. .+....+.-.+..-...||.+.+-+.-..+....|..+
T Consensus 200 ~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 200 QQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 42 23333333344444556676666666666666666544
No 86
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=1.1e-06 Score=88.71 Aligned_cols=149 Identities=14% Similarity=0.079 Sum_probs=91.8
Q ss_pred chhhHhHHHH--HhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHC-C--------CCCCHH
Q 043637 177 NVILESSLVD--AYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLRE-D--------IRPLNF 245 (693)
Q Consensus 177 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g--------~~p~~~ 245 (693)
|..|..++++ .|..-|+++.|.+-++.+. +...|..|.+.+.+.++.+-|.-.+-.|... | -.|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 5566666654 4667788888877776654 3456888888888888888888777777532 1 1121 2
Q ss_pred hHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCC-CchhHHHHHHHHHhcC
Q 043637 246 TFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDER-NIISWTSIVSGYAISG 324 (693)
Q Consensus 246 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g 324 (693)
+-..+.-.....|.+++|+.+|.+.++.. .|=..|-..|.+++|.++-+.-.+- =..+|.....-+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 22222223345566777777777665532 2334566677888777776544332 1235666666666677
Q ss_pred CHHHHHHHHhhCC
Q 043637 325 RIREARELFNEMP 337 (693)
Q Consensus 325 ~~~~A~~~~~~~~ 337 (693)
+.+.|++.|++..
T Consensus 873 Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 873 DIEAALEYYEKAG 885 (1416)
T ss_pred cHHHHHHHHHhcC
Confidence 7777777777654
No 87
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.03 E-value=3.9e-06 Score=86.87 Aligned_cols=575 Identities=12% Similarity=-0.017 Sum_probs=298.6
Q ss_pred hhhHHHhhccCCCCCc---ccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHH
Q 043637 93 LDDARGLFDEMPERDG---GSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLI 169 (693)
Q Consensus 93 ~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 169 (693)
...|...|-+..+.|+ ..|..|...|+...+..+|...|+...+.+ .-+......+...+++..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 4455555544433333 368888888888888888999998888764 446677888889999999999998883332
Q ss_pred HHhCC-CCchhhHhHHHHHhhcCCCHHHHHHHHhccCC---CCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH
Q 043637 170 VKRGF-CGNVILESSLVDAYGKCMVMTDARRMFDDIQN---KNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNF 245 (693)
Q Consensus 170 ~~~g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 245 (693)
.+... ..-..-|..+.-.|.+.++...|..-|+...+ .|...|..+..+|.+.|++..|+++|.+... +.|+..
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s~ 630 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLSK 630 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHhH
Confidence 22210 11112222344456677888888888887764 4666788889999999999999999988765 445432
Q ss_pred hHHHHH--HHhcCCCCcchhHHHHHHHHHhc------CCCchHHHHHHHHHHHHcCChhHHHhhhcCCCC----------
Q 043637 246 TFANAL--FACSFLSSPYEGMQIHGVIIKID------FEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDE---------- 307 (693)
Q Consensus 246 ~~~~ll--~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------- 307 (693)
|...- ...+..|...++...+......- ...-..++-.+...+...|-..+|.+.+++-.+
T Consensus 631 -y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 631 -YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred -HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 22222 22355677777777776654321 111222333333333333433444444332211
Q ss_pred -CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc---HHHHHHHHHhCCCH---H---HHHHHHHHHHHcCCCCCHh
Q 043637 308 -RNIISWTSIVSGYAISGRIREARELFNEMPERNVIS---WNAMLAGYTRSLLW---K---EALDFVFLMRKTTKDIDQV 377 (693)
Q Consensus 308 -~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~---~---~a~~~~~~m~~~~~~p~~~ 377 (693)
.+...|..+- .|..+|-... |+.+. ...+..-.-..+.. + -+.+.+-.-.+.-..| ..
T Consensus 710 ~~~~~~Wi~as----------dac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~-~~ 777 (1238)
T KOG1127|consen 710 QSDRLQWIVAS----------DACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHM-YP 777 (1238)
T ss_pred hhhHHHHHHHh----------HHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhcc-ch
Confidence 0111111111 2233333332 33111 11111101111111 1 0111111111111111 11
Q ss_pred hHHHHHHHHh------ccc-chhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC--CCChhhHHH
Q 043637 378 TLGLILNVCA------GLS-EIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ--RRDKVSWNA 448 (693)
Q Consensus 378 ~~~~ll~~~~------~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~ 448 (693)
.|+.-++.+. ..+ +...|...+...++.. ..+..+++.|. .....|++.-+...+-+... +....+|..
T Consensus 778 WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLG-Vlsg~gnva~aQHCfIks~~sep~~~~~W~N 855 (1238)
T KOG1127|consen 778 WYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALG-VLSGIGNVACAQHCFIKSRFSEPTCHCQWLN 855 (1238)
T ss_pred HHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHH-Hhhccchhhhhhhhhhhhhhccccchhheec
Confidence 2222222211 111 1123444444433321 22333444443 33555666666555444333 235667777
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHH----hCCCcchhHHHHHHHHHHh
Q 043637 449 VLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIR----NCYEINVVCRGALVEVYTK 524 (693)
Q Consensus 449 l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~ 524 (693)
+...+.+..+++-|...|...+...+.+...+..........|+.-+...+|..--. .|--++..-+-........
T Consensus 856 lgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~ 935 (1238)
T KOG1127|consen 856 LGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQ 935 (1238)
T ss_pred cceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHh
Confidence 777777888888888888877766666666666665555566666666666655222 2222233222222233334
Q ss_pred hCCHHHHHHHHhcCC-------------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCChHHHHHH----HH
Q 043637 525 CCCLEYAIRVFKESS-------------SLDVIICNSMILGFCHNERGREALEVFGLMKKE-GIKPDHITFHGI----LL 586 (693)
Q Consensus 525 ~~~~~~A~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l----~~ 586 (693)
.|+.++-+...+.+. +.+...|.......-+.+.+..|.+...+.... ..+-|..+|+.+ .+
T Consensus 936 Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gR 1015 (1238)
T KOG1127|consen 936 NGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGR 1015 (1238)
T ss_pred ccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Confidence 455444433333322 334456666666666666666666666554331 012344455532 24
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC-HHhHHHHHHHHHhcCC
Q 043637 587 ACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP----FNPT-VPMLRKIFDKCRKNGY 661 (693)
Q Consensus 587 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~ 661 (693)
.++..|.++.|...+..... ..+..+...-+ ...-.|+++++.+.|++.. ...+ +.....++......+.
T Consensus 1016 L~lslgefe~A~~a~~~~~~----evdEdi~gt~l-~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~ 1090 (1238)
T KOG1127|consen 1016 LELSLGEFESAKKASWKEWM----EVDEDIRGTDL-TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQ 1090 (1238)
T ss_pred hhhhhcchhhHhhhhcccch----hHHHHHhhhhH-HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhccc
Confidence 55566666665554432211 11111111111 1133678888888888774 2222 3455556666667777
Q ss_pred ccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 662 ATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 662 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
.+-|...+-....+.|.+...+.-|+.+|
T Consensus 1091 k~~A~~lLfe~~~ls~~~~~sll~L~A~~ 1119 (1238)
T KOG1127|consen 1091 KNDAQFLLFEVKSLSKVQASSLLPLPAVY 1119 (1238)
T ss_pred chHHHHHHHHHHHhCccchhhHHHHHHHH
Confidence 88888888888888887777777776655
No 88
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.01 E-value=5.7e-08 Score=96.80 Aligned_cols=237 Identities=13% Similarity=0.063 Sum_probs=138.9
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHhhcCC---------CChh-hHHHHHHHHHhcCChHHHHHHHHHhhh-----CC-
Q 043637 410 NIFVSNALLDMYRKCGNLRSARIWFYQMSQR---------RDKV-SWNAVLTGYARRGQSEEAMTSFSEMQW-----ET- 473 (693)
Q Consensus 410 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~- 473 (693)
-..+...+...|...|+++.|+..+...+.. +... ..+.+...|...+++++|..+|+++.. .|
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3445556777788888888887666665542 1111 122344555666666666666665521 11
Q ss_pred -CC-CHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHH-HHH
Q 043637 474 -RP-SKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVI-ICN 547 (693)
Q Consensus 474 -~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~-~~~ 547 (693)
.| -..++..|..+|.+.|++++|...+++..+ +++... .+.+. .++
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------I~~~~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------IYEKLLGASHPEVAAQLS 329 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------HHHHhhccChHHHHHHHH
Confidence 11 122333444445555555555444444332 111111 12222 355
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHC---CCCCC----hHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CC--CCC-h
Q 043637 548 SMILGFCHNERGREALEVFGLMKKE---GIKPD----HITFHGILLACIHEGNVKLALQFFDSMRCKY---GI--IPQ-L 614 (693)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~--~p~-~ 614 (693)
.++..++..+++++|..++.+..+. -..++ ..+++.|...|...|++++|.++++++..+. +. .+. .
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 5666777777777777777665441 01122 2568888888888888888888888876532 11 111 3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--------CCC-CHHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 043637 615 EHYECMIKLYCRYGYMKELEDFVNRMP--------FNP-TVPMLRKIFDKCRKNGYATLGEWAARRLNE 674 (693)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 674 (693)
..++.|...|.+.++..+|.++|.+.. ..| ...+|..|...|...|+++.|.+..+++..
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 346777788888888888877777653 122 234778888888888888888888888764
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.99 E-value=2e-07 Score=79.80 Aligned_cols=190 Identities=10% Similarity=0.008 Sum_probs=150.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhh
Q 043637 446 WNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKC 525 (693)
Q Consensus 446 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (693)
...+.-+|.+.|+...|...+++..+..+.+..++..+...|.+.|..+.|.+.|+...+..++ +..+.|.....+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhC
Confidence 4456667778888888888888877777777777778888888888888888888887775544 566777777778888
Q ss_pred CCHHHHHHHHhcCC-CC----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHH
Q 043637 526 CCLEYAIRVFKESS-SL----DVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQ 599 (693)
Q Consensus 526 ~~~~~A~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~ 599 (693)
|++++|...|++.. .| -..+|..+..+..+.|+.+.|.+.|++..+ ..|+ ..+...+.....+.|++-.|..
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHH
Confidence 88888888888766 33 345788888888999999999999999998 5675 4778888899999999999999
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 600 FFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 600 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
.++.... ...++....-..|+.--+.|+.+.|-++=..+
T Consensus 195 ~~~~~~~--~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 195 YLERYQQ--RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHh--cccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999875 45588888888888888899988887765544
No 90
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.5e-06 Score=79.42 Aligned_cols=366 Identities=11% Similarity=0.016 Sum_probs=228.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC-CCcccHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc
Q 043637 312 SWTSIVSGYAISGRIREARELFNEMPE-RNVISWNAMLAGYTRSLL--WKEALDFVFLMRKTTKDIDQVTLGLILNVCAG 388 (693)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 388 (693)
.-...+.+|...++-+.|...+...+. ....--|.++..+...|. .+++...-+-+++.-+-.+ .|.+..+
T Consensus 99 ~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~------~i~~ll~ 172 (564)
T KOG1174|consen 99 QRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQ------VIEALLE 172 (564)
T ss_pred HHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHH------HHHHHHH
Confidence 445677888889999999999888876 333333444433333322 2222222121221100000 0001100
Q ss_pred ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHc--CChHHHHHH--HHhhcC--CCChhhHHHHHHHHHhcCChHHH
Q 043637 389 LSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKC--GNLRSARIW--FYQMSQ--RRDKVSWNAVLTGYARRGQSEEA 462 (693)
Q Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~--~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a 462 (693)
.+ +..+..--..|-...++|.......-+.++..+ ++...|... +.+... +.|......+...+...|+.++|
T Consensus 173 l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a 251 (564)
T KOG1174|consen 173 LG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQA 251 (564)
T ss_pred Hh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHH
Confidence 00 001111111122223344444444444444433 333333222 222222 24677788899999999999999
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---
Q 043637 463 MTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS--- 539 (693)
Q Consensus 463 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--- 539 (693)
+..|++.+...+-+........-.+.+.|+.+....+...+....-. +...|-.-........+++.|+.+-++..
T Consensus 252 ~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~ 330 (564)
T KOG1174|consen 252 EDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSE 330 (564)
T ss_pred HHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccC
Confidence 99999987665444444444444456778888877777776653211 22222222333445678888999888877
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 043637 540 SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYE 618 (693)
Q Consensus 540 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 618 (693)
+.+...|-.=...+...|+.++|.-.|+..+. +.| +..+|..|+.+|...|++.+|.-+-.+... -+..+..+..
T Consensus 331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~Lt 406 (564)
T KOG1174|consen 331 PRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLT 406 (564)
T ss_pred cccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhhcchhhhh
Confidence 34445555556778899999999999999888 777 569999999999999999999998888874 5556666666
Q ss_pred HHH-HHH-HhcCChHHHHHHHHhCC-CCC-CHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 619 CMI-KLY-CRYGYMKELEDFVNRMP-FNP-TVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 619 ~l~-~~~-~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
.+. ..+ ....--++|..++++.. .+| -.+....+.+.|...|..+.++..+++.+...|+ -.-++.||.++
T Consensus 407 L~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~ 481 (564)
T KOG1174|consen 407 LFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIM 481 (564)
T ss_pred hhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHH
Confidence 663 333 33445678999999875 344 4678888899999999999999999999999994 45667777654
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.98 E-value=5.4e-08 Score=91.46 Aligned_cols=249 Identities=13% Similarity=0.047 Sum_probs=147.2
Q ss_pred HcCChHHHHHHHHhhcCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHH
Q 043637 423 KCGNLRSARIWFYQMSQRR--DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIH 500 (693)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 500 (693)
-.|.+..++.........+ +.....-+.+++...|+++.++ .++.....|.......+...+...++.+.+..-+
T Consensus 13 y~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l 89 (290)
T PF04733_consen 13 YLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSSSPELQAVRLLAEYLSSPSDKESALEEL 89 (290)
T ss_dssp CTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHH
T ss_pred HhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCCChhHHHHHHHHHHHhCccchHHHHHHH
Confidence 3456655544333111111 1223334556677777665433 3443333566556555555555444444444444
Q ss_pred HHHHHhCCC-cchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChH
Q 043637 501 CFVIRNCYE-INVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHI 579 (693)
Q Consensus 501 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 579 (693)
+........ .+.........++...|++++|++++++. .+.......+..+.+.++++.|.+.++.|.+ +..|.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~- 164 (290)
T PF04733_consen 90 KELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS- 164 (290)
T ss_dssp HHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-
T ss_pred HHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-
Confidence 333322222 22222233334566678888888888776 4556666778888899999999999999887 44443
Q ss_pred HHHHHHHHHh----ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHH
Q 043637 580 TFHGILLACI----HEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIF 653 (693)
Q Consensus 580 ~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 653 (693)
+...+..++. -.+.+.+|..+|+++.+ ...+++.+.+.+..++...|++++|.+++++.. .+.++.++..++
T Consensus 165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNli 242 (290)
T PF04733_consen 165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLI 242 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 3333333332 23368889999999874 566788888888888999999999999888764 334455666666
Q ss_pred HHHHhcCCc-cHHHHHHHHHhhcCCCCCc
Q 043637 654 DKCRKNGYA-TLGEWAARRLNELNPWAPF 681 (693)
Q Consensus 654 ~~~~~~g~~-~~A~~~~~~~~~~~p~~~~ 681 (693)
-.....|+. +.+.+.+..+...+|++|-
T Consensus 243 v~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 243 VCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 666666766 5677788888888887763
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.98 E-value=4.8e-07 Score=91.52 Aligned_cols=285 Identities=13% Similarity=0.019 Sum_probs=197.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC--CCc-ccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh-c----
Q 043637 317 VSGYAISGRIREARELFNEMPE--RNV-ISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCA-G---- 388 (693)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~---- 388 (693)
...+...|++++|++.++.-.. .|. .........+.+.|+.++|..+|..+.+.+ |+...|-..+..+. .
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 4567889999999999988665 443 455666788999999999999999999864 66666655555443 1
Q ss_pred -ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChH-HHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 043637 389 -LSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLR-SARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSF 466 (693)
Q Consensus 389 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 466 (693)
..+.+...++++.+...- |.......+.-.+.....+. .+...+...+.+.-+.+++.+-..|....+..-..+++
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 234667778888776543 22222222211111112222 23334444555555667777777777555555555555
Q ss_pred HHhhhC--------------C-CCCH--HHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHH
Q 043637 467 SEMQWE--------------T-RPSK--FTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLE 529 (693)
Q Consensus 467 ~~~~~~--------------~-~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 529 (693)
...... . +|+. .++..+...|...|++++|.++.++.++..+. .+..|..-...|.+.|++.
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHH
Confidence 554221 1 3444 35566677888999999999999999986543 4778888999999999999
Q ss_pred HHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-----H-HHHH--HHHHHhccCcHHHHH
Q 043637 530 YAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-----I-TFHG--ILLACIHEGNVKLAL 598 (693)
Q Consensus 530 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~-~~~~--l~~~~~~~g~~~~A~ 598 (693)
+|.+.++... ..|..+-+..+..+.+.|++++|.+++......+..|-. . .|.. ...+|.+.|++..|+
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999998877 456667778888899999999999999999887755522 1 2222 237899999999998
Q ss_pred HHHHHhHH
Q 043637 599 QFFDSMRC 606 (693)
Q Consensus 599 ~~~~~~~~ 606 (693)
+.|..+.+
T Consensus 326 k~~~~v~k 333 (517)
T PF12569_consen 326 KRFHAVLK 333 (517)
T ss_pred HHHHHHHH
Confidence 87776654
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=3.7e-06 Score=74.76 Aligned_cols=260 Identities=13% Similarity=0.044 Sum_probs=151.7
Q ss_pred HcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCHHHHHHHHHHhcccCChHHHHHHHH
Q 043637 423 KCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWET-RPSKFTFETLLAACANISSLEQGKQIHC 501 (693)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 501 (693)
..+++..+..++++.-.+.+..+.+.......+.|++++|++-|+...+-+ -.....|+.-+ ++.+.++++.|.+...
T Consensus 124 se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iS 202 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHIS 202 (459)
T ss_pred ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHH
Confidence 456666664444444445555555555566677888888888888765555 44445555444 4456677888888888
Q ss_pred HHHHhCCCcch----------------------------hHHHHHHHHHHhhCCHHHHHHHHhcCC-----CCCHHHHHH
Q 043637 502 FVIRNCYEINV----------------------------VCRGALVEVYTKCCCLEYAIRVFKESS-----SLDVIICNS 548 (693)
Q Consensus 502 ~~~~~~~~~~~----------------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~ 548 (693)
+++++|++-.+ ..+|.-...+.+.++++.|.+.+-.|+ ..|+++...
T Consensus 203 EIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN 282 (459)
T KOG4340|consen 203 EIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHN 282 (459)
T ss_pred HHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhH
Confidence 87776553211 112222334567899999999999998 357777666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC-CChhHHHHHHHHHHh
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGII-PQLEHYECMIKLYCR 626 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~ 626 (693)
+.-.-. .+++.+..+-+.-+.+ +.| -..||..++-.||+..-++.|..++-+-.. ...+ .+...|+ |+.+++-
T Consensus 283 ~Al~n~-~~~p~~g~~KLqFLL~--~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~-LLdaLIt 357 (459)
T KOG4340|consen 283 QALMNM-DARPTEGFEKLQFLLQ--QNPFPPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYD-LLDALIT 357 (459)
T ss_pred HHHhcc-cCCccccHHHHHHHHh--cCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHHHHh
Confidence 543322 3445555555555666 455 358999999999999999998888754321 1111 1222232 2333332
Q ss_pred -cCChHHHHHHHHhC------------------CCCCCHHhHH------------------HHHHHHHhcCCccHHHHHH
Q 043637 627 -YGYMKELEDFVNRM------------------PFNPTVPMLR------------------KIFDKCRKNGYATLGEWAA 669 (693)
Q Consensus 627 -~g~~~~A~~~~~~~------------------~~~~~~~~~~------------------~l~~~~~~~g~~~~A~~~~ 669 (693)
.-..++|.+-++.+ ..+.+....+ +-...+....|+..+++.+
T Consensus 358 ~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YLPVlMa~AkiyW~~~Dy~~vEk~F 437 (459)
T KOG4340|consen 358 CQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYLPVLMAQAKIYWNLEDYPMVEKIF 437 (459)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHH
Confidence 23344443333221 0112222222 2223334567889999999
Q ss_pred HHHhhcCCCCCcchhhhhh
Q 043637 670 RRLNELNPWAPFQFKITTN 688 (693)
Q Consensus 670 ~~~~~~~p~~~~~~~~l~~ 688 (693)
....+...++...-.+.+.
T Consensus 438 r~SvefC~ehd~WkLNvaH 456 (459)
T KOG4340|consen 438 RKSVEFCNDHDVWKLNVAH 456 (459)
T ss_pred HHHHhhhcccceeeecccc
Confidence 9998887766655444444
No 94
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.87 E-value=1.4e-06 Score=83.56 Aligned_cols=192 Identities=10% Similarity=-0.054 Sum_probs=118.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 043637 444 VSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYT 523 (693)
Q Consensus 444 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (693)
..|..+...+...|+.++|...|++.....+.+...|..+...+...|+++.|...++...+..+. +...+..+..++.
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~ 143 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 346666666777777777777777776666666777777777777778888887777777765443 3455566677777
Q ss_pred hhCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHH
Q 043637 524 KCCCLEYAIRVFKESS--SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFF 601 (693)
Q Consensus 524 ~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 601 (693)
..|++++|.+.++... .|+..............++.++|...|++.... ..|+...+ .+ .....|+...+ +.+
T Consensus 144 ~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~--~~~~lg~~~~~-~~~ 218 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NI--VEFYLGKISEE-TLM 218 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HH--HHHHccCCCHH-HHH
Confidence 7788888887777655 232221122222234567788888888765543 23433222 22 22234444433 344
Q ss_pred HHhHHhcCCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 602 DSMRCKYGIIP-----QLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 602 ~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
+.+.+.....| ....|..+...+.+.|+.++|+..|++..
T Consensus 219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 219 ERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44442111111 23567788888888999999999888775
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=4.2e-06 Score=74.44 Aligned_cols=187 Identities=10% Similarity=0.010 Sum_probs=95.3
Q ss_pred HhHHHHHhhcCCCHHHHHHHHhccCCC---CcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHH-HHHHhcC
Q 043637 181 ESSLVDAYGKCMVMTDARRMFDDIQNK---NAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFAN-ALFACSF 256 (693)
Q Consensus 181 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~ 256 (693)
+.+.+..+.+..+++.|++++..-.++ +....+.|..+|....++..|-+.++++-.. .|...-|.. -...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 344444455556666666666554432 3334555666666667777777777766543 343333321 1223334
Q ss_pred CCCcchhHHHHHHHHHhcCCCchHHHHHHHH--HHHHcCChhHHHhhhcCCCC-CCchhHHHHHHHHHhcCCHHHHHHHH
Q 043637 257 LSSPYEGMQIHGVIIKIDFEGDDVVLGSLTE--MYVKCGRLEDARGLLDQPDE-RNIISWTSIVSGYAISGRIREARELF 333 (693)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~ 333 (693)
.+.+.+|.++...|.+. +....-..-+. .....+++..+..++++... .+..+.+.......+.|+.+.|.+-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 44555555555544332 11111111111 12234666666666666552 44444455555555666666666666
Q ss_pred hhCCC----CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 043637 334 NEMPE----RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKD 373 (693)
Q Consensus 334 ~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 373 (693)
+...+ .....||.. -++.+.|++..|++...++.++|++
T Consensus 168 qaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhh
Confidence 66554 233344433 3444556666777766666666654
No 96
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.7e-06 Score=83.63 Aligned_cols=85 Identities=14% Similarity=0.090 Sum_probs=43.3
Q ss_pred HhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCC--CC-cccHHHHHHHHHhcCCchHH
Q 043637 152 SSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQN--KN-AVSWNVIVRRYLVAGNGKEA 228 (693)
Q Consensus 152 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a 228 (693)
+.+..|+++.|...|-+.+... ++|...|+.-..+|++.|++++|.+=-..-.+ |+ ...|+-...++.-.|++++|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 3445566666666665555544 23555555555566666665555443332222 22 22355555555555555555
Q ss_pred HHHHHHHHH
Q 043637 229 VVMFFKMLR 237 (693)
Q Consensus 229 ~~~~~~m~~ 237 (693)
+.-|.+=.+
T Consensus 90 ~~ay~~GL~ 98 (539)
T KOG0548|consen 90 ILAYSEGLE 98 (539)
T ss_pred HHHHHHHhh
Confidence 555555443
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.80 E-value=1.8e-05 Score=71.99 Aligned_cols=61 Identities=11% Similarity=-0.019 Sum_probs=30.3
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-C-CCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCC
Q 043637 619 CMIKLYCRYGYMKELEDFVNRMP-F-NPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWA 679 (693)
Q Consensus 619 ~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 679 (693)
.+-.++...|++-+|++...+.. . +.|+.++..-..+|..-.+++.|+.-|+++.+++|+|
T Consensus 312 ~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 312 VLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred eeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 33444445555555555555443 1 2224444444555555555555555555555555544
No 98
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.79 E-value=8.1e-08 Score=80.44 Aligned_cols=122 Identities=10% Similarity=-0.047 Sum_probs=98.5
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 043637 563 LEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP- 641 (693)
Q Consensus 563 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 641 (693)
..++++..+ +.|+. +..+...+...|++++|...|+.+.. --+.+...+..+..++.+.|++++|+..|++..
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 356667666 56654 45567788889999999999998874 344567788888889999999999999998875
Q ss_pred -CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 642 -FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 642 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
.+.++..+..++.++...|+.++|+..+++++++.|+++..+.+.+++.
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 4566778888888899999999999999999999999998888877653
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.79 E-value=3.6e-07 Score=86.00 Aligned_cols=222 Identities=12% Similarity=0.097 Sum_probs=129.4
Q ss_pred HHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-C-CCHHHHHHHHHHhcccCChH
Q 043637 417 LLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWET-R-PSKFTFETLLAACANISSLE 494 (693)
Q Consensus 417 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~-p~~~~~~~ll~~~~~~~~~~ 494 (693)
+.+++...|+.+.++..+.... .|.......+...+...++-+.++.-+++..... . .+..........+...|+++
T Consensus 41 ~~Rs~iAlg~~~~vl~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~ 119 (290)
T PF04733_consen 41 QYRSYIALGQYDSVLSEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYE 119 (290)
T ss_dssp HHHHHHHTT-HHHHHHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHcCChhHHHHHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHH
Confidence 3444555555554433332222 3333333333322222233444454444443333 2 22222233334456667777
Q ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--CCHHH---HHHHHHHHHhCCChHHHHHHHHHH
Q 043637 495 QGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSS--LDVII---CNSMILGFCHNERGREALEVFGLM 569 (693)
Q Consensus 495 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m 569 (693)
.|.+++... .+.......+.+|.+.++++.|.+.++.+.+ .|... ..+.+......+++++|..+|+++
T Consensus 120 ~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El 193 (290)
T PF04733_consen 120 EALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEEL 193 (290)
T ss_dssp HHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 776665432 2455666677778888888888888877762 23221 222233333344699999999998
Q ss_pred HHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHhCC-CCCCHH
Q 043637 570 KKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYM-KELEDFVNRMP-FNPTVP 647 (693)
Q Consensus 570 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~-~~~~~~ 647 (693)
.+. ..++..+.+.+..++...|++++|.+++++..+ ..+-++.+...++-+....|+. +.+.+.+.++. ..|+-+
T Consensus 194 ~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 194 SDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred Hhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 775 567888899999999999999999999999874 3444677777888888888888 66778888886 355544
Q ss_pred h
Q 043637 648 M 648 (693)
Q Consensus 648 ~ 648 (693)
.
T Consensus 271 ~ 271 (290)
T PF04733_consen 271 L 271 (290)
T ss_dssp H
T ss_pred H
Confidence 4
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.79 E-value=2.9e-05 Score=70.75 Aligned_cols=289 Identities=11% Similarity=0.007 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHH---HHHHhcCCHHHHHHHHhhCCCCCcccHHHHH---HHHHhC
Q 043637 281 VLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIV---SGYAISGRIREARELFNEMPERNVISWNAML---AGYTRS 354 (693)
Q Consensus 281 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~ 354 (693)
-.--+...+...|++..|+.-|....+-|+..|.++- ..|...|+...|+.-|..+.+..+..+.+-+ ..+.+.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc
Confidence 3344566677788888888888888877777666654 4677788887887777777663333333322 346778
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH--hh------------HHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 043637 355 LLWKEALDFVFLMRKTTKDIDQ--VT------------LGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDM 420 (693)
Q Consensus 355 ~~~~~a~~~~~~m~~~~~~p~~--~~------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 420 (693)
|.++.|..-|+...+....-+. .. ....+..+...|+...+......+.+.. +.+...+..-..+
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKC 198 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHH
Confidence 8888888888888765321111 00 1112222333444444444444444332 2344444444444
Q ss_pred HHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHH
Q 043637 421 YRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIH 500 (693)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 500 (693)
|...|.+..| +.-++...+....+..++.-+-..+...|+.+......
T Consensus 199 ~i~~~e~k~A--------------------------------I~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~i 246 (504)
T KOG0624|consen 199 YIAEGEPKKA--------------------------------IHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEI 246 (504)
T ss_pred HHhcCcHHHH--------------------------------HHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4444544444 44444433333333333334444444444444444444
Q ss_pred HHHHHhCCCcchhH----HHHH---------HHHHHhhCCHHHHHHHHhcCC--CCC--H---HHHHHHHHHHHhCCChH
Q 043637 501 CFVIRNCYEINVVC----RGAL---------VEVYTKCCCLEYAIRVFKESS--SLD--V---IICNSMILGFCHNERGR 560 (693)
Q Consensus 501 ~~~~~~~~~~~~~~----~~~l---------~~~~~~~~~~~~A~~~~~~~~--~~~--~---~~~~~l~~~~~~~g~~~ 560 (693)
++..+. +|+... |..+ +......++|.++++-.+... .|. . ..+..+-.++...|++.
T Consensus 247 RECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~ 324 (504)
T KOG0624|consen 247 RECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFG 324 (504)
T ss_pred HHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHH
Confidence 333332 121110 1100 011233455666666555544 222 1 13444556677778888
Q ss_pred HHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 561 EALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 561 ~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
+|++...+.++ +.|| ..++.--..+|.-..+++.|+.-++.+.+
T Consensus 325 eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 325 EAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 99888888888 6776 67777778888888889999988888874
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.62 E-value=0.00014 Score=72.73 Aligned_cols=91 Identities=10% Similarity=-0.003 Sum_probs=50.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCC-cch--hHHHHHHHHHHh
Q 043637 448 AVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYE-INV--VCRGALVEVYTK 524 (693)
Q Consensus 448 ~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~ 524 (693)
.+...+...|++++|.+.+++.....+.+...+..+..++...|++++|...+++....... ++. ..+..+...+..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 34445566666666666666665555444555555566666666666666666665553221 111 223345555555
Q ss_pred hCCHHHHHHHHhcC
Q 043637 525 CCCLEYAIRVFKES 538 (693)
Q Consensus 525 ~~~~~~A~~~~~~~ 538 (693)
.|++++|...+++.
T Consensus 199 ~G~~~~A~~~~~~~ 212 (355)
T cd05804 199 RGDYEAALAIYDTH 212 (355)
T ss_pred CCCHHHHHHHHHHH
Confidence 66666666666554
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=4e-06 Score=81.83 Aligned_cols=243 Identities=12% Similarity=0.087 Sum_probs=160.6
Q ss_pred ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC-C-CChhhHHHHHHHHHhcCChHHHHHHH
Q 043637 389 LSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ-R-RDKVSWNAVLTGYARRGQSEEAMTSF 466 (693)
Q Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 466 (693)
.|++..|.-.|+..++.+ |.+...|..|.......++-..|+..+.+.+. + .+..+.-.|.-.|...|.-..|+..+
T Consensus 298 nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred cCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 344444444444444433 44566666677777777777777777777766 3 36667777778888888888888888
Q ss_pred HHhhhCCCCC---------HHHHHHHHHHhcccCChHHHHHHHHHHHH-hCCCcchhHHHHHHHHHHhhCCHHHHHHHHh
Q 043637 467 SEMQWETRPS---------KFTFETLLAACANISSLEQGKQIHCFVIR-NCYEINVVCRGALVEVYTKCCCLEYAIRVFK 536 (693)
Q Consensus 467 ~~~~~~~~p~---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 536 (693)
+.-....+|- ...-.. ..+..........++|-++.. .+..+|+.+...|.-.|--.|+++.|...|+
T Consensus 377 ~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~ 454 (579)
T KOG1125|consen 377 DKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE 454 (579)
T ss_pred HHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence 7753221110 000000 112222333444555555444 5556788888888888999999999999998
Q ss_pred cCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC---
Q 043637 537 ESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYG--- 609 (693)
Q Consensus 537 ~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--- 609 (693)
... +.|..+||.|...++...+.++|+..|.+.++ +.|+. .....|.-+|...|.+++|...|-.++.-..
T Consensus 455 ~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~ 532 (579)
T KOG1125|consen 455 AALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSR 532 (579)
T ss_pred HHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccc
Confidence 766 66778999999999999999999999999999 78985 5666777789999999999888777653111
Q ss_pred -----CCCChhHHHHHHHHHHhcCChHHHHHH
Q 043637 610 -----IIPQLEHYECMIKLYCRYGYMKELEDF 636 (693)
Q Consensus 610 -----~~p~~~~~~~l~~~~~~~g~~~~A~~~ 636 (693)
..++..+|..|=.++.-.++.|-+...
T Consensus 533 ~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 533 NHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred ccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 111234666666666666666644443
No 103
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.61 E-value=0.00013 Score=72.92 Aligned_cols=254 Identities=8% Similarity=-0.022 Sum_probs=151.3
Q ss_pred HHHcCChHHHHHHHHhhcC-CC-ChhhHHH---HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHH
Q 043637 421 YRKCGNLRSARIWFYQMSQ-RR-DKVSWNA---VLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQ 495 (693)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 495 (693)
+...|++++|...+.+.+. .| +...+.. ........+....+.+.+.......+........+...+...|++++
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 3445666666555555443 22 2222221 11111123444555555554111113334455566778889999999
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCC-----CCH--HHHHHHHHHHHhCCChHHHHHHHHH
Q 043637 496 GKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSS-----LDV--IICNSMILGFCHNERGREALEVFGL 568 (693)
Q Consensus 496 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 568 (693)
|...+++..+.... +...+..+..++...|++++|...+++..+ ++. ..|..+...+...|++++|..++++
T Consensus 133 A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 133 AEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999996644 466778889999999999999999998762 222 2456788899999999999999999
Q ss_pred HHHCCC-CCChHHH-H--HHHHHHhccCcHHHHHHHHHHhHHh--cCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 569 MKKEGI-KPDHITF-H--GILLACIHEGNVKLALQFFDSMRCK--YGI--IPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 569 m~~~g~-~p~~~~~-~--~l~~~~~~~g~~~~A~~~~~~~~~~--~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
...... .+..... + .++.-+...|..+.+.+. +.+... ... ..........+.++...|+.++|...++.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l 290 (355)
T cd05804 212 HIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAAL 290 (355)
T ss_pred HhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 865321 1112111 1 223333444432222222 212110 011 111122235677788999999999999877
Q ss_pred CC---C----CC----HHhHHHHHHHHHhcCCccHHHHHHHHHhhcC
Q 043637 641 PF---N----PT----VPMLRKIFDKCRKNGYATLGEWAARRLNELN 676 (693)
Q Consensus 641 ~~---~----~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 676 (693)
.. . +. ....-....++...|+.++|.+.+..++.+-
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 291 KGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 41 1 11 1122223344557899999999999888754
No 104
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=0.00019 Score=69.97 Aligned_cols=102 Identities=13% Similarity=0.061 Sum_probs=79.3
Q ss_pred HHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCC--C-CcccHHHHHHHHHhCCChhh
Q 043637 50 QLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPE--R-DGGSWNAMLGAYTQNGFPGR 126 (693)
Q Consensus 50 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~ 126 (693)
.+....|++..|...|.......++ +...|+.-..+|++.|++++|.+--.+-.+ | -+..|+....++.--|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 4567789999999999999998865 888889999999999999999876655443 3 24579999999999999999
Q ss_pred HHHHHHHhhhCCCCCCHhhHHHHHHHh
Q 043637 127 TLELFLDMNHSGVSANQITYANVLRSS 153 (693)
Q Consensus 127 a~~~~~~m~~~g~~~~~~~~~~ll~~~ 153 (693)
|+..|.+-.+.. +-+...++.+..+.
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 999998877753 33444555555554
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.58 E-value=0.00017 Score=82.18 Aligned_cols=257 Identities=8% Similarity=-0.060 Sum_probs=142.2
Q ss_pred HHHHHcCChHHHHHHHHhhcCC-C--Ch----hhHHHHHHHHHhcCChHHHHHHHHHhhhC----CCCC--HHHHHHHHH
Q 043637 419 DMYRKCGNLRSARIWFYQMSQR-R--DK----VSWNAVLTGYARRGQSEEAMTSFSEMQWE----TRPS--KFTFETLLA 485 (693)
Q Consensus 419 ~~~~~~~~~~~a~~~~~~~~~~-~--~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~p~--~~~~~~ll~ 485 (693)
..+...|++++|...+.+.... + +. ...+.+...+...|++++|...+++.... +.+. ..++..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 3345566777766666554431 1 11 23344555566677777777777665322 1111 223444555
Q ss_pred HhcccCChHHHHHHHHHHHH----hCCC--c-chhHHHHHHHHHHhhCCHHHHHHHHhcCCC------C--CHHHHHHHH
Q 043637 486 ACANISSLEQGKQIHCFVIR----NCYE--I-NVVCRGALVEVYTKCCCLEYAIRVFKESSS------L--DVIICNSMI 550 (693)
Q Consensus 486 ~~~~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~--~~~~~~~l~ 550 (693)
.+...|+++.|...+++... .+.. + ....+..+...+...|++++|...+.+... + ....+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 66777888887777766554 1211 1 122333445556667888888777766431 1 122344455
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCC-CChHHH-----HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh----HHHHH
Q 043637 551 LGFCHNERGREALEVFGLMKKEGIK-PDHITF-----HGILLACIHEGNVKLALQFFDSMRCKYGIIPQLE----HYECM 620 (693)
Q Consensus 551 ~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~----~~~~l 620 (693)
......|+.+.|...+++.....-. .....+ ...+..+...|+.+.|...+..... ....... .+..+
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK--PEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC--CCCccchhHHHHHHHH
Confidence 6667778888888877776542100 011111 0112334456777888777766542 1111111 13456
Q ss_pred HHHHHhcCChHHHHHHHHhCCC----CCC----HHhHHHHHHHHHhcCCccHHHHHHHHHhhcCC
Q 043637 621 IKLYCRYGYMKELEDFVNRMPF----NPT----VPMLRKIFDKCRKNGYATLGEWAARRLNELNP 677 (693)
Q Consensus 621 ~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 677 (693)
..++...|+.++|...+++... .+. ......+..++...|+.++|...+++++++-.
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 6677778888888887776631 111 12344455667778888888888888887654
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.55 E-value=5.9e-06 Score=73.34 Aligned_cols=124 Identities=9% Similarity=0.003 Sum_probs=81.1
Q ss_pred CCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH-HhcCC--hH
Q 043637 556 NERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLY-CRYGY--MK 631 (693)
Q Consensus 556 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~ 631 (693)
.++.+++...+++..+ ..| |...|..+...|...|++++|...+++..+ -.+.+...+..+..++ ...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 4455666666666666 344 446666666777777777777777777764 2233566666666653 55565 47
Q ss_pred HHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcch
Q 043637 632 ELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQF 683 (693)
Q Consensus 632 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 683 (693)
+|..++++.. .+.+...+..+...+...|++++|+..++++++++|.+....
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 7777777764 344556666677777777777777777777777777655443
No 107
>PLN02789 farnesyltranstransferase
Probab=98.55 E-value=4.4e-05 Score=72.99 Aligned_cols=221 Identities=10% Similarity=-0.014 Sum_probs=119.8
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccC-ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCH--
Q 043637 452 GYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANIS-SLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCL-- 528 (693)
Q Consensus 452 ~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 528 (693)
.+...++.++|+....++....+-+...+..-..++...| +++++...++++.+.+.+ +...|+....++.+.|..
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhh
Confidence 3444555666666666655554444444444444444444 456666666666654443 333344443334444432
Q ss_pred HHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhcc---Cc----HHHH
Q 043637 529 EYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHE---GN----VKLA 597 (693)
Q Consensus 529 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~---g~----~~~A 597 (693)
++++.+++++. +.+..+|+.....+...|+++++++.++++++. .| |...|+.....+.+. |. .+++
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 44555555544 445566776666777777777777777777773 34 335555544444332 21 2455
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhc----CChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcC-----------
Q 043637 598 LQFFDSMRCKYGIIPQLEHYECMIKLYCRY----GYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNG----------- 660 (693)
Q Consensus 598 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g----------- 660 (693)
++...+++. -.+-|...|+.+...+... ++..+|..++.+.. ...++..+..+++.|....
T Consensus 203 l~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~ 280 (320)
T PLN02789 203 LKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVD 280 (320)
T ss_pred HHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhh
Confidence 666655553 2333455566666666552 33455666666543 2334556666666665421
Q ss_pred -------CccHHHHHHHHHhhcCC
Q 043637 661 -------YATLGEWAARRLNELNP 677 (693)
Q Consensus 661 -------~~~~A~~~~~~~~~~~p 677 (693)
..++|..+++.+-+.+|
T Consensus 281 ~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 281 TLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred ccccccccHHHHHHHHHHHHhhCc
Confidence 23668888888866666
No 108
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=7.1e-05 Score=65.98 Aligned_cols=154 Identities=15% Similarity=0.126 Sum_probs=83.0
Q ss_pred HHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----cCcHH
Q 043637 520 EVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIH----EGNVK 595 (693)
Q Consensus 520 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~ 595 (693)
..|...|++++|++..+..........+ +..+.+..+.+-|.+.+++|.+ +. +..|.+.|..++.+ .+.+.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~--id-ed~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ--ID-EDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc--cc-hHHHHHHHHHHHHHHhccchhhh
Confidence 4456666666666666663333333332 2334455566666666666666 22 33455544444432 34566
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcC-CccHHHHHHHHH
Q 043637 596 LALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNG-YATLGEWAARRL 672 (693)
Q Consensus 596 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 672 (693)
+|.-+|++|.+ ...|++.+.+-...++...|++++|..++++.. ...++.++..++-.-...| +.+--.+.+.++
T Consensus 191 dAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 191 DAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 66667777653 466666666666666666777777777666664 2334444433333333333 333334455555
Q ss_pred hhcCCCCC
Q 043637 673 NELNPWAP 680 (693)
Q Consensus 673 ~~~~p~~~ 680 (693)
....|+++
T Consensus 269 k~~~p~h~ 276 (299)
T KOG3081|consen 269 KLSHPEHP 276 (299)
T ss_pred HhcCCcch
Confidence 55566544
No 109
>PLN02789 farnesyltranstransferase
Probab=98.55 E-value=1.3e-05 Score=76.61 Aligned_cols=200 Identities=8% Similarity=-0.082 Sum_probs=147.9
Q ss_pred hcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhC-CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCCh--H
Q 043637 487 CANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCC-CLEYAIRVFKESS---SLDVIICNSMILGFCHNERG--R 560 (693)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~--~ 560 (693)
+...+..++|.....++++..+. +...|+....++...| .+++++..++++. +.+..+|+.....+.+.|+. +
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 34456788888888888885544 4445555556666667 5799999998876 55566777666666666663 6
Q ss_pred HHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---CCh----HH
Q 043637 561 EALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRY---GYM----KE 632 (693)
Q Consensus 561 ~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~ 632 (693)
+++.+++++.+ ..| |..+|.....++...|+++++++.++++++ .-.-+...|+....++.+. |.. ++
T Consensus 126 ~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~--~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 126 KELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE--EDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 78999999998 667 468899988999999999999999999986 3344556666666555554 323 45
Q ss_pred HHHHHHhCC--CCCCHHhHHHHHHHHHhc----CCccHHHHHHHHHhhcCCCCCcchhhhhhccc
Q 043637 633 LEDFVNRMP--FNPTVPMLRKIFDKCRKN----GYATLGEWAARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 633 A~~~~~~~~--~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
++...+++. .+.+...|..+...+... +...+|...+..+.+.+|+++.++-.|+.+|+
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 666664443 456677888888888773 34567888999999999999999999999885
No 110
>PF12854 PPR_1: PPR repeat
Probab=98.54 E-value=1.2e-07 Score=55.90 Aligned_cols=32 Identities=28% Similarity=0.614 Sum_probs=16.3
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 609 GIIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 609 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
|+.||..+|+.|+.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
No 111
>PF12854 PPR_1: PPR repeat
Probab=98.54 E-value=1.1e-07 Score=55.98 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=20.6
Q ss_pred CCCCchhhHhHHHHHhhcCCCHHHHHHHHhcc
Q 043637 173 GFCGNVILESSLVDAYGKCMVMTDARRMFDDI 204 (693)
Q Consensus 173 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 204 (693)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.49 E-value=9e-06 Score=75.63 Aligned_cols=60 Identities=20% Similarity=0.188 Sum_probs=46.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-CCC----CHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCC
Q 043637 619 CMIKLYCRYGYMKELEDFVNRMP-FNP----TVPMLRKIFDKCRKNGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 619 ~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 678 (693)
.+...|.+.|++++|+..+++.. ..| ....+..++.++.+.|++++|...++.+....|+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45667888999999999888774 122 2457778889999999999999988887776663
No 113
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.47 E-value=0.0014 Score=74.78 Aligned_cols=360 Identities=12% Similarity=0.008 Sum_probs=219.4
Q ss_pred HHHHHHHHHHcCChhHHHhhhcCCCCCCch--hHHHHHHHHHhcCCHHHHHHHHhhCCC----CCcccHHHHHHHHHhCC
Q 043637 282 LGSLTEMYVKCGRLEDARGLLDQPDERNII--SWTSIVSGYAISGRIREARELFNEMPE----RNVISWNAMLAGYTRSL 355 (693)
Q Consensus 282 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~ 355 (693)
+......+...|++.+|............. ........+...|+.+.+...+..+.. .+..........+...|
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC
Confidence 334455566778877777666555443221 122223345567888888888877642 23333334445566788
Q ss_pred CHHHHHHHHHHHHHcCCC------CCHh--hHHHHHHHHhcccchhhHHHHHHHHHHhCCCCc----hhHHHHHHHHHHH
Q 043637 356 LWKEALDFVFLMRKTTKD------IDQV--TLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSN----IFVSNALLDMYRK 423 (693)
Q Consensus 356 ~~~~a~~~~~~m~~~~~~------p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 423 (693)
+++++..++......--. +... .....-..+...|+++.+...++...+.--..+ ....+.+...+..
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~ 503 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC 503 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 999999888877543111 1111 111222344578899999998888765311111 1234556666778
Q ss_pred cCChHHHHHHHHhhcCC------CC--hhhHHHHHHHHHhcCChHHHHHHHHHhhhC----CC---C-CHHHHHHHHHHh
Q 043637 424 CGNLRSARIWFYQMSQR------RD--KVSWNAVLTGYARRGQSEEAMTSFSEMQWE----TR---P-SKFTFETLLAAC 487 (693)
Q Consensus 424 ~~~~~~a~~~~~~~~~~------~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~---p-~~~~~~~ll~~~ 487 (693)
.|++++|...+.+.... +. ..++..+...+...|++++|...+++.... +. + ....+..+...+
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 89999998887776541 11 224455666788899999999988876332 21 1 123344555667
Q ss_pred cccCChHHHHHHHHHHHHh----CCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC----CC-CHHHH-----HHHHHHH
Q 043637 488 ANISSLEQGKQIHCFVIRN----CYEINVVCRGALVEVYTKCCCLEYAIRVFKESS----SL-DVIIC-----NSMILGF 553 (693)
Q Consensus 488 ~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~-~~~~~-----~~l~~~~ 553 (693)
...|++++|...+.+.... +.......+..+...+...|+.++|...+.... .. ....+ ...+..+
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYW 663 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHH
Confidence 7789999999888887652 111123344456667788899999988877653 11 11111 1122344
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCh---HHHHHHHHHHhccCcHHHHHHHHHHhHHh---cCCCCC-hhHHHHHHHHHHh
Q 043637 554 CHNERGREALEVFGLMKKEGIKPDH---ITFHGILLACIHEGNVKLALQFFDSMRCK---YGIIPQ-LEHYECMIKLYCR 626 (693)
Q Consensus 554 ~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~p~-~~~~~~l~~~~~~ 626 (693)
...|+.+.|.+.+............ ..+..+..++...|++++|...++++... .+..++ ..+...+..++.+
T Consensus 664 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~ 743 (903)
T PRK04841 664 QMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ 743 (903)
T ss_pred HHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 5678899998888775542111111 11345567888899999999999988642 122222 2345667788889
Q ss_pred cCChHHHHHHHHhCC
Q 043637 627 YGYMKELEDFVNRMP 641 (693)
Q Consensus 627 ~g~~~~A~~~~~~~~ 641 (693)
.|+.++|...+.+..
T Consensus 744 ~G~~~~A~~~L~~Al 758 (903)
T PRK04841 744 QGRKSEAQRVLLEAL 758 (903)
T ss_pred cCCHHHHHHHHHHHH
Confidence 999999999988774
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.47 E-value=3.5e-06 Score=84.42 Aligned_cols=217 Identities=14% Similarity=0.127 Sum_probs=140.3
Q ss_pred CCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 043637 407 YSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAA 486 (693)
Q Consensus 407 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~ 486 (693)
++|--..-..+...+.+.|-..+|..+++.. ..|...+.+|+..|+..+|..+..+..+ .+|+...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh
Confidence 3444455566677777777777776655553 4567777777777777777777766655 47777777777777
Q ss_pred hcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHH
Q 043637 487 CANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREAL 563 (693)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 563 (693)
.....-+++|.++.+..-.. .-..+.....+.++++++.+.++... +.-..+|-.+..+..+.++++.|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 66666667776666554321 11122222334567777777776544 444556666666777777777777
Q ss_pred HHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 564 EVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 564 ~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
+.|..-.. +.||. ..|+.+-.+|.+.|+-.+|...+.+..+ .. .-+..+|...+....+.|.+++|++.++++.
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 77777766 56754 6677777777777777777777777763 34 3344456666666677777777777776653
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.46 E-value=1.7e-05 Score=83.87 Aligned_cols=135 Identities=10% Similarity=-0.023 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 043637 542 DVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECM 620 (693)
Q Consensus 542 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 620 (693)
++..+-.|.......|++++|+.+++...+ +.||. .....+..++.+.+++++|....++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 355555566666666666666666666666 55654 4444555666666666666666666653 233334445555
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CC-CCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 621 IKLYCRYGYMKELEDFVNRMP-FN-PTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 621 ~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
..++.+.|++++|...|++.. .. .+...+-.+...+.+.|+.++|..+|+++++...+..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 566666666666666666654 22 2244555556666666666666666666666544333
No 116
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=4.4e-06 Score=81.58 Aligned_cols=224 Identities=13% Similarity=0.008 Sum_probs=142.6
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHH
Q 043637 451 TGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEY 530 (693)
Q Consensus 451 ~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 530 (693)
.-+.+.|+..+|.-.|+...+..+-+...|..|.......++-..|...+.+..+..+. +......|.-.|...|.-.+
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 34667888888888888888777777888888888888888888888888888775443 55666667777777777777
Q ss_pred HHHHHhcCCCCCHH-HHHHHH--H-------HHHhCCChHHHHHHHHHH-HHCCCCCChHHHHHHHHHHhccCcHHHHHH
Q 043637 531 AIRVFKESSSLDVI-ICNSMI--L-------GFCHNERGREALEVFGLM-KKEGIKPDHITFHGILLACIHEGNVKLALQ 599 (693)
Q Consensus 531 A~~~~~~~~~~~~~-~~~~l~--~-------~~~~~g~~~~A~~~~~~m-~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 599 (693)
|...++......+. .|.... . .+.....+....++|-++ .+.+..+|+.....|.-.|.-.|++++|++
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 77777765421111 111110 0 001111122333333333 334433556666666667777777777777
Q ss_pred HHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcC
Q 043637 600 FFDSMRCKYGIIP-QLEHYECMIKLYCRYGYMKELEDFVNRMP-F-NPTVPMLRKIFDKCRKNGYATLGEWAARRLNELN 676 (693)
Q Consensus 600 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 676 (693)
.|+.+.. ++| |..+|+.|...+....+.++|+..++++. . +.-+...-.++-+|...|.+++|...+=.++.+.
T Consensus 452 cf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 7777763 344 45567777777777777777777777664 2 3334455567777777777777777776666665
Q ss_pred CC
Q 043637 677 PW 678 (693)
Q Consensus 677 p~ 678 (693)
+.
T Consensus 529 ~k 530 (579)
T KOG1125|consen 529 RK 530 (579)
T ss_pred hc
Confidence 53
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=1e-05 Score=81.29 Aligned_cols=226 Identities=9% Similarity=-0.023 Sum_probs=154.8
Q ss_pred HHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC-CCChhhHHHHHHHHHhcCChHHH
Q 043637 384 NVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ-RRDKVSWNAVLTGYARRGQSEEA 462 (693)
Q Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a 462 (693)
..+.+.|-...|..+++ ....+...+.+|+..|+..+|..+..+.+. .|+...|..+........-+++|
T Consensus 406 ell~slGitksAl~I~E---------rlemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEka 476 (777)
T KOG1128|consen 406 ELLLSLGITKSALVIFE---------RLEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKA 476 (777)
T ss_pred HHHHHcchHHHHHHHHH---------hHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHH
Confidence 34444555555555543 245677788888888888888777777777 46777777777777777777888
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---
Q 043637 463 MTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS--- 539 (693)
Q Consensus 463 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--- 539 (693)
.++.+..... .-..+.....+.++++++.+-|+.-.+.+.- ...+|-.+.-+..+.++++.|...|....
T Consensus 477 wElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 477 WELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred HHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence 8888765322 1122222334468888888888876664322 45556666667778888888888888766
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 043637 540 SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYEC 619 (693)
Q Consensus 540 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 619 (693)
+.+...||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|...+-...+.|.+++|++.+.++........|..+...
T Consensus 550 Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~ 628 (777)
T KOG1128|consen 550 PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLI 628 (777)
T ss_pred CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHH
Confidence 4456688888888888888888888888888865 334456666777778888888888888887653333346666666
Q ss_pred HHHHHHh
Q 043637 620 MIKLYCR 626 (693)
Q Consensus 620 l~~~~~~ 626 (693)
++....+
T Consensus 629 iv~~~~~ 635 (777)
T KOG1128|consen 629 IVRTVLE 635 (777)
T ss_pred HHHHHHh
Confidence 6555444
No 118
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.41 E-value=7.5e-05 Score=80.53 Aligned_cols=240 Identities=12% Similarity=0.070 Sum_probs=181.5
Q ss_pred HHHHHHHhhcCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-----CCCHHHHHHHHHHhcccCChHHHHHHHHH
Q 043637 429 SARIWFYQMSQRRD-KVSWNAVLTGYARRGQSEEAMTSFSEMQWET-----RPSKFTFETLLAACANISSLEQGKQIHCF 502 (693)
Q Consensus 429 ~a~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 502 (693)
.|.+........|+ ...|-..|....+.++.++|.+++++....- .--...|.++++.-..-|.-+...++|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 44344444444564 4568889999999999999999999875433 11123566666666666778888899998
Q ss_pred HHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-
Q 043637 503 VIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH- 578 (693)
Q Consensus 503 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 578 (693)
+.+..- ...+|..|...|.+.++.++|.++++.|. ......|..++..+.+.++-+.|.+++.+..+ .-|..
T Consensus 1523 Acqycd--~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--~lPk~e 1598 (1710)
T KOG1070|consen 1523 ACQYCD--AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALK--SLPKQE 1598 (1710)
T ss_pred HHHhcc--hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh--hcchhh
Confidence 887432 34567889999999999999999999988 55677999999999999999999999999988 56652
Q ss_pred --HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-----CCCHHhHHH
Q 043637 579 --ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPF-----NPTVPMLRK 651 (693)
Q Consensus 579 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 651 (693)
....-.+..-++.|+.+++..+|+.... ..+.....|+.+++.-.+.|+.+.++.+|++... ..-...|..
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~--ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLS--AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHh--hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHH
Confidence 3344455677889999999999999985 5666777899999999999999999999998742 223446777
Q ss_pred HHHHHHhcCCccHHHHHHHHHhh
Q 043637 652 IFDKCRKNGYATLGEWAARRLNE 674 (693)
Q Consensus 652 l~~~~~~~g~~~~A~~~~~~~~~ 674 (693)
++..-..+||-+.++.+=.++.+
T Consensus 1677 wLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1677 WLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHHHHHhcCchhhHHHHHHHHHH
Confidence 77776777876666555555544
No 119
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=8.5e-05 Score=71.56 Aligned_cols=137 Identities=9% Similarity=0.026 Sum_probs=109.0
Q ss_pred HHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHH
Q 043637 521 VYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKL 596 (693)
Q Consensus 521 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~ 596 (693)
.+...|+.++|+..++.+. +.|+..+......+...|+.++|.+.++++.. ..|+. .....+..++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHH
Confidence 3456688888888888766 55666667777888999999999999999998 67874 556667789999999999
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcC
Q 043637 597 ALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELN 676 (693)
Q Consensus 597 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 676 (693)
|+.+++.... ..+-|+..|..|.++|...|+..+|..-. .+.+...|++++|+..++.+.+..
T Consensus 393 ai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~---------------AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 393 AIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLAR---------------AEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHH---------------HHHHHhCCCHHHHHHHHHHHHHhc
Confidence 9999998874 67778888999999999999988887643 455667788888888877777744
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.38 E-value=1.2e-05 Score=67.41 Aligned_cols=97 Identities=8% Similarity=-0.089 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 043637 541 LDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYEC 619 (693)
Q Consensus 541 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 619 (693)
.++..+..+...+...|++++|...|++... +.| +...|..+..++...|++++|...++.+.+ -.+.++..+..
T Consensus 22 ~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~~~a~~~ 97 (144)
T PRK15359 22 VDPETVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASHPEPVYQ 97 (144)
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHH
Confidence 3343455566777788888888888888877 556 456777777888888888888888888874 34456777777
Q ss_pred HHHHHHhcCChHHHHHHHHhCC
Q 043637 620 MIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 620 l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
+..++.+.|+.++|+..+++..
T Consensus 98 lg~~l~~~g~~~eAi~~~~~Al 119 (144)
T PRK15359 98 TGVCLKMMGEPGLAREAFQTAI 119 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888888888888887764
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.38 E-value=2.3e-05 Score=72.86 Aligned_cols=183 Identities=11% Similarity=-0.021 Sum_probs=115.0
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCH---HHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcch--hHH
Q 043637 441 RDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSK---FTFETLLAACANISSLEQGKQIHCFVIRNCYEINV--VCR 515 (693)
Q Consensus 441 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 515 (693)
.....+..+...+...|++++|...|+++....+.+. ..+..+..++...|+++.|...++.+.+....... ..+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3455677778888889999999999998866553332 46677778888889999999999988875443221 123
Q ss_pred HHHHHHHHhh--------CCHHHHHHHHhcCC--CCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHH
Q 043637 516 GALVEVYTKC--------CCLEYAIRVFKESS--SLDV-IICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGI 584 (693)
Q Consensus 516 ~~l~~~~~~~--------~~~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 584 (693)
..+..++... |+.++|.+.++++. .|+. ..+..+... ..+... . ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~--------------~~~~~~---~-~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM--------------DYLRNR---L-AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH--------------HHHHHH---H-HHHHHHH
Confidence 3333344332 45555666555544 2221 111111100 000000 0 0011244
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 585 LLACIHEGNVKLALQFFDSMRCKYGIIP-QLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 585 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
...+.+.|++++|+..++.+.....-.| ....+..++.++.+.|++++|...++.+.
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5678889999999999999986433333 35678889999999999999999888765
No 122
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=5.9e-05 Score=65.93 Aligned_cols=183 Identities=11% Similarity=0.047 Sum_probs=103.8
Q ss_pred hcCChHHHHHHHHHhhhC---C--CCCH-HHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCH
Q 043637 455 RRGQSEEAMTSFSEMQWE---T--RPSK-FTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCL 528 (693)
Q Consensus 455 ~~~~~~~a~~~~~~~~~~---~--~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 528 (693)
...+.++.++++.++... + .|+. ..|..++-+....|..+.|...++.+...- +-+..+-..-.-.+...|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 345678888888877422 2 3333 345556666677788888888888877643 21223222223334455666
Q ss_pred HHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 529 EYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 529 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
++|.++++... +.|..++-.=+......|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 66666666665 344445555555555556666666666665553 34456666666666666666666666666665
Q ss_pred HhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhCC
Q 043637 606 CKYGIIPQLEHYECMIKLYCRYG---YMKELEDFVNRMP 641 (693)
Q Consensus 606 ~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~ 641 (693)
- --+-++..+..+...+.-.| +.+-|.+.+.+..
T Consensus 182 l--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 182 L--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred H--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2 22233444455555544333 3334555555443
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.37 E-value=0.00014 Score=64.38 Aligned_cols=155 Identities=11% Similarity=0.002 Sum_probs=97.2
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCC
Q 043637 482 TLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNER 558 (693)
Q Consensus 482 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~ 558 (693)
.+-..+...|+-+....+........ ..+......++....+.|++.+|...+.+.. ++|...|+.+..+|.+.|+
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 33344444455444444444332211 1233444445666666677777777776654 5667777777777777777
Q ss_pred hHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 043637 559 GREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFV 637 (693)
Q Consensus 559 ~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 637 (693)
.+.|..-+.+..+ +.|+ +..++.+...+.-.|+.+.|..++..... .-.-|..+-..+.......|++++|..+.
T Consensus 150 ~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l--~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 150 FDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL--SPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh--CCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777777777 5564 46667777777777777777777777753 33335666667777777777777777766
Q ss_pred HhCC
Q 043637 638 NRMP 641 (693)
Q Consensus 638 ~~~~ 641 (693)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 5443
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.37 E-value=3.9e-05 Score=81.90 Aligned_cols=144 Identities=11% Similarity=0.022 Sum_probs=88.9
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHHhhcCC-CChh-hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 043637 409 SNIFVSNALLDMYRKCGNLRSARIWFYQMSQR-RDKV-SWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAA 486 (693)
Q Consensus 409 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~ 486 (693)
.+...+..|+..+...+++++|..+....+.. |+.. .|-.+...+.+.++..++..+ .++..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~~l~~ 92 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL----------------NLIDS 92 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh----------------hhhhh
Confidence 35667788888888888888888888766663 4433 344444456666665555444 22333
Q ss_pred hcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHH
Q 043637 487 CANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREAL 563 (693)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 563 (693)
.....++.....+...+.+.+. +...+..+..+|.+.|+.++|...++++. +.|+.+.|.+...|... +.++|+
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~--~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGE--NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhhhh--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 3333344333334444443221 33355667777777777777777777766 45566777777777777 777777
Q ss_pred HHHHHHHH
Q 043637 564 EVFGLMKK 571 (693)
Q Consensus 564 ~~~~~m~~ 571 (693)
+++.+...
T Consensus 170 ~m~~KAV~ 177 (906)
T PRK14720 170 TYLKKAIY 177 (906)
T ss_pred HHHHHHHH
Confidence 77777665
No 125
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.34 E-value=0.00015 Score=78.31 Aligned_cols=197 Identities=10% Similarity=0.022 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHhhcCCC-------ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHH
Q 043637 411 IFVSNALLDMYRKCGNLRSARIWFYQMSQRR-------DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETL 483 (693)
Q Consensus 411 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~l 483 (693)
...|-..+......+++++|.++.++.+..- -...|.++++.-..-|.-+...++|++..+-. ..-..|..|
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~V~~~L 1536 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYTVHLKL 1536 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHHHHHHH
Confidence 3344444555555555555555555444421 12234444444444444444555555544321 112334455
Q ss_pred HHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---C--CCHHHHHHHHHHHHhCCC
Q 043637 484 LAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---S--LDVIICNSMILGFCHNER 558 (693)
Q Consensus 484 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~--~~~~~~~~l~~~~~~~g~ 558 (693)
...|.+.+++++|.++++.|.+.-- -...+|...++.+.+..+-+.|..++.+.. + .........+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 5555555555555555555554211 244455555555555555555555555433 1 123344444444455555
Q ss_pred hHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 043637 559 GREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP 612 (693)
Q Consensus 559 ~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 612 (693)
.+++..+|+..... .| ....|+.+++.-.++|+.+.+..+|+++.. .++.|
T Consensus 1616 aeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~-l~l~~ 1667 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE-LKLSI 1667 (1710)
T ss_pred chhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHh-cCCCh
Confidence 55555555555542 23 234555555555555555555555555554 24444
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.34 E-value=7.2e-06 Score=68.56 Aligned_cols=113 Identities=9% Similarity=-0.095 Sum_probs=76.9
Q ss_pred HHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 043637 565 VFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-- 641 (693)
Q Consensus 565 ~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 641 (693)
.+++... ..|+. .....+...+...|++++|...++.+.. ..+.+...+..+...|.+.|++++|...+++..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555 45543 4455556677777778888877777764 234456667777777777788888877777663
Q ss_pred CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCc
Q 043637 642 FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPF 681 (693)
Q Consensus 642 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 681 (693)
.+.+...+..+...+...|++++|...++++++++|+++.
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 3444556666777777788888888888888888886655
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.00025 Score=62.68 Aligned_cols=157 Identities=13% Similarity=0.165 Sum_probs=110.5
Q ss_pred HHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCH-HHHHHHHHHHH----hCC
Q 043637 483 LLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDV-IICNSMILGFC----HNE 557 (693)
Q Consensus 483 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~----~~g 557 (693)
-...|++.+++++|.+...... +......=+.++.+..+++-|...++.|...|. .+.+.|..++. ..+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccch
Confidence 3445677777777776665411 333444445666777888888888888885443 35665666554 345
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHH-HH
Q 043637 558 RGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELE-DF 636 (693)
Q Consensus 558 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~ 636 (693)
.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++... ....++.+...++-.-...|+..++. +.
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~--kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD--KDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 689999999999886 688899999999999999999999999999985 45566777777777777777776554 44
Q ss_pred HHhCC-CCCCHHh
Q 043637 637 VNRMP-FNPTVPM 648 (693)
Q Consensus 637 ~~~~~-~~~~~~~ 648 (693)
+.+.. ..|..+.
T Consensus 265 l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 265 LSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHhcCCcchH
Confidence 55554 3444443
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=4.7e-05 Score=66.56 Aligned_cols=192 Identities=11% Similarity=0.070 Sum_probs=141.2
Q ss_pred ccCChHHHHHHHHHHHH---hC-CCcchh-HHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChH
Q 043637 489 NISSLEQGKQIHCFVIR---NC-YEINVV-CRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGR 560 (693)
Q Consensus 489 ~~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 560 (693)
...+.++..+++..+.. .| ..++.. .|..++-+...+|+.+.|...++... +.+..+-..-..-+-..|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 35678889999988876 34 334433 34455556677889999988888755 222222222223345678999
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 561 EALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 561 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
+|+++++.+.+.. +.|..++..-+-..-..|+.-+|++-+.+..+ .+..|.+.|..+...|...|++++|.--++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999864 33567888777777788888899998888885 67889999999999999999999999999988
Q ss_pred C-CCCC-HHhHHHHHHHHHhcC---CccHHHHHHHHHhhcCCCCCcch
Q 043637 641 P-FNPT-VPMLRKIFDKCRKNG---YATLGEWAARRLNELNPWAPFQF 683 (693)
Q Consensus 641 ~-~~~~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~ 683 (693)
. .+|. +..+..+.+.+...| +..-|...|++.++++|.+..++
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 5 4554 445666777666544 77889999999999999655443
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.26 E-value=8.7e-05 Score=65.58 Aligned_cols=155 Identities=12% Similarity=-0.048 Sum_probs=127.6
Q ss_pred HHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhcc
Q 043637 516 GALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHE 591 (693)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~ 591 (693)
..+...+...|+-+.+..+..... +.|....+.++....+.|++..|...+.+... +.| |...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence 445566777788777777777654 55666777899999999999999999999998 455 678999999999999
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHH
Q 043637 592 GNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAA 669 (693)
Q Consensus 592 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 669 (693)
|+.+.|..-+.+..+ -..-++..++.+.-.|.-.|+++.|..++.... ...+......+.......|++.+|+.+.
T Consensus 148 Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 999999999999985 233346678999999999999999999998875 2346778888999999999999999877
Q ss_pred HHHhh
Q 043637 670 RRLNE 674 (693)
Q Consensus 670 ~~~~~ 674 (693)
..-+.
T Consensus 226 ~~e~~ 230 (257)
T COG5010 226 VQELL 230 (257)
T ss_pred ccccc
Confidence 65443
No 130
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.23 E-value=0.00014 Score=64.65 Aligned_cols=125 Identities=4% Similarity=0.003 Sum_probs=71.2
Q ss_pred CChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHh
Q 043637 457 GQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFK 536 (693)
Q Consensus 457 ~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 536 (693)
++.++++..++......+.+...|..+...+...|+++.|...+++..+..
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~----------------------------- 103 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR----------------------------- 103 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------------------
Confidence 334444444544444444445555555555555555555555555444433
Q ss_pred cCCCCCHHHHHHHHHHH-HhCCC--hHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 043637 537 ESSSLDVIICNSMILGF-CHNER--GREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP 612 (693)
Q Consensus 537 ~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 612 (693)
+.+...+..+..++ ...|+ .++|.+++++..+ ..|+ ...+..+...+.+.|++++|+..|+++.+ ..+|
T Consensus 104 ---P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~--l~~~ 176 (198)
T PRK10370 104 ---GENAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTALMLLASDAFMQADYAQAIELWQKVLD--LNSP 176 (198)
T ss_pred ---CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 33455555555553 45555 4777777777777 4553 45666666777777777777777777764 4455
Q ss_pred ChhHH
Q 043637 613 QLEHY 617 (693)
Q Consensus 613 ~~~~~ 617 (693)
+..-+
T Consensus 177 ~~~r~ 181 (198)
T PRK10370 177 RVNRT 181 (198)
T ss_pred CccHH
Confidence 54443
No 131
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.19 E-value=0.0082 Score=58.95 Aligned_cols=173 Identities=11% Similarity=0.055 Sum_probs=129.4
Q ss_pred hHHHHHHHHHhhhCC-CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHhhCCHHHHHHHHh
Q 043637 459 SEEAMTSFSEMQWET-RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEI-NVVCRGALVEVYTKCCCLEYAIRVFK 536 (693)
Q Consensus 459 ~~~a~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 536 (693)
.+...++++++.... ..-..+|...++..-+..-++.|..+|.++.+.+..+ .+.+.+++++.|+ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 556667777766555 4444577888888888899999999999999977666 7778888888776 477889999999
Q ss_pred cCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC--
Q 043637 537 ESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH--ITFHGILLACIHEGNVKLALQFFDSMRCKYG-- 609 (693)
Q Consensus 537 ~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-- 609 (693)
-.. ..++.--...+.-+...++-..|..+|++....++.|+. ..|..++.--..-|+...+.++-+++..-+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 776 344555567788888999999999999999998888864 7899999988999999999999888765322
Q ss_pred CCCChhHHHHHHHHHHhcCChHH
Q 043637 610 IIPQLEHYECMIKLYCRYGYMKE 632 (693)
Q Consensus 610 ~~p~~~~~~~l~~~~~~~g~~~~ 632 (693)
..+....-..++..|.=.+....
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred hcCCCChHHHHHHHHhhcccccc
Confidence 23222333444555554444433
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.17 E-value=0.00066 Score=72.86 Aligned_cols=180 Identities=12% Similarity=0.076 Sum_probs=121.4
Q ss_pred HHcCCCC-CHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhH
Q 043637 368 RKTTKDI-DQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSW 446 (693)
Q Consensus 368 ~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 446 (693)
.-.+..| +...+..++..+...++++++.++.+...+.. +-....|-.+...+.+.++...+ ..+ .
T Consensus 22 ~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~-~lv-~---------- 88 (906)
T PRK14720 22 DANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDS-NLL-N---------- 88 (906)
T ss_pred ccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhh-hhh-h----------
Confidence 3344555 45567788888889999999999999666543 33334444444477788887777 222 2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhC
Q 043637 447 NAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCC 526 (693)
Q Consensus 447 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (693)
++..+....++.-+..+...|... .-+...+..+..+|.+.|+.+++..+|+++.+..+. ++...|.+...|...
T Consensus 89 --~l~~~~~~~~~~~ve~~~~~i~~~-~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 89 --LIDSFSQNLKWAIVEHICDKILLY-GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE- 163 (906)
T ss_pred --hhhhcccccchhHHHHHHHHHHhh-hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-
Confidence 333333344442223333333322 334457788888899999999999999999987743 788888888888888
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh
Q 043637 527 CLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH 578 (693)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 578 (693)
++++|.+++.+. +..+...+++..+.++|.++.+ ..|+.
T Consensus 164 dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~--~~~~d 202 (906)
T PRK14720 164 DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVH--YNSDD 202 (906)
T ss_pred hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHh--cCccc
Confidence 999998887653 3446666778888888888877 45543
No 133
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.16 E-value=0.00012 Score=61.69 Aligned_cols=125 Identities=11% Similarity=0.074 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh--hHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKPDH----ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQL--EHYE 618 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~ 618 (693)
.|..++..+ ..++...+...++.+.+. .|+. .....+...+...|++++|...|+.+..+ ...|.. ....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 344555555 478888898889998885 3433 23334558889999999999999999863 322221 2344
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCCccHHHHHHHHHh
Q 043637 619 CMIKLYCRYGYMKELEDFVNRMPFNP-TVPMLRKIFDKCRKNGYATLGEWAARRLN 673 (693)
Q Consensus 619 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 673 (693)
.|..++...|++++|+..++.....+ .+..+...++.+...|+.++|+..|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 57888999999999999998875433 34466677889999999999999998764
No 134
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.15 E-value=0.0041 Score=58.32 Aligned_cols=82 Identities=13% Similarity=0.043 Sum_probs=43.6
Q ss_pred cCChHHHHHHHHhhcCCCChhh--HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHH
Q 043637 424 CGNLRSARIWFYQMSQRRDKVS--WNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHC 501 (693)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 501 (693)
.|+.+.|.+.|+.|+..|.... ...|.-.-.+.|..+.|..+-+.....-+--.......+...|..|+++.|.++.+
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence 4666666666666666554332 22233333445555555555555444333334455555666666666666666665
Q ss_pred HHHH
Q 043637 502 FVIR 505 (693)
Q Consensus 502 ~~~~ 505 (693)
.-+.
T Consensus 213 ~~~~ 216 (531)
T COG3898 213 AQRA 216 (531)
T ss_pred HHHH
Confidence 5444
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.14 E-value=0.011 Score=58.23 Aligned_cols=148 Identities=13% Similarity=0.094 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCC-chhHHHHHHHHHHHcCChHHHHHHHH
Q 043637 357 WKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSS-NIFVSNALLDMYRKCGNLRSARIWFY 435 (693)
Q Consensus 357 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 435 (693)
.+.....++++...-..--..+|...++...+..-+..|+.+|.+..+.+..+ .+.+.++++..||. ++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 55566666666554333333566777787788888888888888888877766 77788888887764 55666667777
Q ss_pred hhcCC-CChhh-HHHHHHHHHhcCChHHHHHHHHHhhhCC-CCC--HHHHHHHHHHhcccCChHHHHHHHHHHHH
Q 043637 436 QMSQR-RDKVS-WNAVLTGYARRGQSEEAMTSFSEMQWET-RPS--KFTFETLLAACANISSLEQGKQIHCFVIR 505 (693)
Q Consensus 436 ~~~~~-~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 505 (693)
--+.+ +|... -...+.-+...++-..+..+|++....+ .|+ ...|..++.--+..|+...+.++-+++..
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 66654 44333 3456666777777777888888876665 333 35677777777777777777766665544
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.13 E-value=0.00035 Score=67.47 Aligned_cols=129 Identities=12% Similarity=-0.004 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHH-HHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHH
Q 043637 544 IICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGI-LLACIHEGNVKLALQFFDSMRCKYGIIPQ-LEHYECMI 621 (693)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 621 (693)
..+--....+...|+.++|+..++.+.. -.|+..-|..+ ...+.+.++.++|.+.++++.. ..|+ ....-.+.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHH
Confidence 3344445556678899999999999998 46776555554 5899999999999999999974 4555 56667789
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCC
Q 043637 622 KLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNP 677 (693)
Q Consensus 622 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 677 (693)
.+|.+.|++.+|+..++... .+.++..|..|..+|...|+..+|..+.-....+.-
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G 439 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAG 439 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCC
Confidence 99999999999999999886 566778999999999999999999998887776654
No 137
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.10 E-value=0.00077 Score=71.61 Aligned_cols=127 Identities=8% Similarity=-0.045 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHH
Q 043637 477 KFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGF 553 (693)
Q Consensus 477 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 553 (693)
...+..|.......|..++|..+++.+.+..++ +......+..++.+.+++++|+..+++.. +.+......+..++
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l 164 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSW 164 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 444445555555555555555555555543322 23333444455555555555555555544 23334445555555
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 554 CHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 554 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
.+.|++++|..+|+++.. ..|+ ..++..+..++...|+.++|...|+...+
T Consensus 165 ~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 165 DEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666666666665555 2333 35555555555555666666666655553
No 138
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.07 E-value=1.6e-05 Score=71.51 Aligned_cols=93 Identities=10% Similarity=-0.077 Sum_probs=40.9
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHHhHHHHHHHHHhcCCccHHH
Q 043637 589 IHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-F-NPTVPMLRKIFDKCRKNGYATLGE 666 (693)
Q Consensus 589 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~ 666 (693)
.+.++|.+|+..|.++++ -.+-|+..|..-..+|.+.|.++.|++-.+... . +.....|..|..+|...|++++|+
T Consensus 92 m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 344444444444444442 112233333344444444444444444444332 1 112234444455555555555555
Q ss_pred HHHHHHhhcCCCCCcch
Q 043637 667 WAARRLNELNPWAPFQF 683 (693)
Q Consensus 667 ~~~~~~~~~~p~~~~~~ 683 (693)
+.|+++++++|+++..-
T Consensus 170 ~aykKaLeldP~Ne~~K 186 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYK 186 (304)
T ss_pred HHHHhhhccCCCcHHHH
Confidence 55555555555444333
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.06 E-value=0.00012 Score=71.35 Aligned_cols=122 Identities=15% Similarity=0.118 Sum_probs=80.5
Q ss_pred HHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcH
Q 043637 516 GALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNV 594 (693)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~ 594 (693)
..|+..+...++++.|..+++++...++.....++..+...++-.+|.+++++.... .| +...+..-...|.+.+++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCH
Confidence 344445555666667777776666444455555667777777777777777777763 44 344444445667777777
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 595 KLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 595 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
+.|+.+.+++.+ -.+-+..+|..|+.+|.+.|++++|+..++.++
T Consensus 251 ~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888777763 333345677777888888888888877777765
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.05 E-value=8e-06 Score=49.14 Aligned_cols=35 Identities=31% Similarity=0.477 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH
Q 043637 210 VSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLN 244 (693)
Q Consensus 210 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 244 (693)
.+||.+|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999873
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.99 E-value=0.033 Score=58.46 Aligned_cols=102 Identities=12% Similarity=0.065 Sum_probs=45.1
Q ss_pred CCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhh--ccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHH
Q 043637 121 NGFPGRTLELFLDMNHSGVSANQITYANVLRSSA--EELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDAR 198 (693)
Q Consensus 121 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 198 (693)
.+++.+|+....++.+. .|+. .|..+++++. +.|..++|..+++.....+.. |..|...+-..|...|+.++|.
T Consensus 22 ~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 34444555444444433 2222 2333333332 445555555555444443322 4445555555555555555555
Q ss_pred HHHhccCC--CCcccHHHHHHHHHhcCCch
Q 043637 199 RMFDDIQN--KNAVSWNVIVRRYLVAGNGK 226 (693)
Q Consensus 199 ~~~~~~~~--~~~~~~~~li~~~~~~~~~~ 226 (693)
.++++..+ |+......+..+|.+.+++.
T Consensus 98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 98 HLYERANQKYPSEELLYHLFMAYVREKSYK 127 (932)
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHH
Confidence 55555543 33222333334444444443
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.98 E-value=1e-05 Score=48.17 Aligned_cols=33 Identities=36% Similarity=0.619 Sum_probs=24.1
Q ss_pred ccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCC
Q 043637 109 GSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSA 141 (693)
Q Consensus 109 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 141 (693)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 143
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.98 E-value=0.018 Score=55.37 Aligned_cols=321 Identities=12% Similarity=0.066 Sum_probs=176.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--------CCcccHHHHHHHHHhC--------C-------CHHHHHHHHHHHHHc-
Q 043637 315 SIVSGYAISGRIREARELFNEMPE--------RNVISWNAMLAGYTRS--------L-------LWKEALDFVFLMRKT- 370 (693)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~--------~-------~~~~a~~~~~~m~~~- 370 (693)
..++++...|++.+++.+++++.. -+..+|+.++-.+.++ . .++-++-+.++|...
T Consensus 133 i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d 212 (549)
T PF07079_consen 133 IEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFD 212 (549)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHh
Confidence 345566666777677666666543 3556666544333321 1 122223333333221
Q ss_pred -----CCCCCHhhHHHHHHHHhcc--cchhhHHHHHHHHHHhCCCCchh-HHHHHHHHHHHcCChHHHHHHHHhhcC---
Q 043637 371 -----TKDIDQVTLGLILNVCAGL--SEIKMGKEVHGFIHRNDYSSNIF-VSNALLDMYRKCGNLRSARIWFYQMSQ--- 439 (693)
Q Consensus 371 -----~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 439 (693)
.+.|....+..++....-. ....--.++++.....-+.|+-. +...++.-+.+ +.+++....+....
T Consensus 213 ~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i 290 (549)
T PF07079_consen 213 QRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKI 290 (549)
T ss_pred hchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhH
Confidence 2455555555555544322 33444555555555555566543 33444444444 44444233332222
Q ss_pred ----CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHH------HHHHHHHhc-c---cCChHHHHHHHHHHHH
Q 043637 440 ----RRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFT------FETLLAACA-N---ISSLEQGKQIHCFVIR 505 (693)
Q Consensus 440 ----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~------~~~ll~~~~-~---~~~~~~a~~~~~~~~~ 505 (693)
+.-..++..++....+.++..+|-+.+.-+..-.+..... -..+-+..+ . ..+...-..+|+....
T Consensus 291 ~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs 370 (549)
T PF07079_consen 291 EKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQS 370 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHh
Confidence 1234567788888888899998888887775543221111 111122222 1 1122333445555554
Q ss_pred hCCCcchhHHHHHH---HHHHhhCC-HHHHHHHHhcCC---CCCHHHHHHHHH----HHH---hCCChHHHHHHHHHHHH
Q 043637 506 NCYEINVVCRGALV---EVYTKCCC-LEYAIRVFKESS---SLDVIICNSMIL----GFC---HNERGREALEVFGLMKK 571 (693)
Q Consensus 506 ~~~~~~~~~~~~l~---~~~~~~~~-~~~A~~~~~~~~---~~~~~~~~~l~~----~~~---~~g~~~~A~~~~~~m~~ 571 (693)
..++- -.....|+ .-+-+.|. -++|+.+++.+. +.|...-|.+.. +|. ....+.+-+.+-+-+.+
T Consensus 371 ~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e 449 (549)
T PF07079_consen 371 YDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITE 449 (549)
T ss_pred hcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 44331 11122222 22444454 778888888766 555554443322 222 12234444555555667
Q ss_pred CCCCCC----hHHHHHHH--HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 572 EGIKPD----HITFHGIL--LACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 572 ~g~~p~----~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
.|+.|- ...-+.|. .-+..+|++.++.-.-..+. .+.|++.+|..++-++....++++|...+.+++
T Consensus 450 ~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 450 VGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred cCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 888883 23444444 45678899999988777775 678999999999999999999999999999996
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.97 E-value=1.7e-05 Score=47.71 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=30.4
Q ss_pred ccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 043637 342 ISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDID 375 (693)
Q Consensus 342 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 375 (693)
.+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3789999999999999999999999999998887
No 145
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.96 E-value=0.00023 Score=59.43 Aligned_cols=87 Identities=14% Similarity=0.090 Sum_probs=49.1
Q ss_pred HHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCc
Q 043637 518 LVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGN 593 (693)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 593 (693)
+...+...|++++|.+.++... +.+...|..+...+...|++++|...+++..+. .| +...+..+...+...|+
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--DPDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHcCC
Confidence 3344444444555544444432 334455556666666666666666666666653 34 34555555566666666
Q ss_pred HHHHHHHHHHhHH
Q 043637 594 VKLALQFFDSMRC 606 (693)
Q Consensus 594 ~~~A~~~~~~~~~ 606 (693)
+++|...++...+
T Consensus 101 ~~~A~~~~~~al~ 113 (135)
T TIGR02552 101 PESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHH
Confidence 6777666666653
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.96 E-value=0.00014 Score=71.01 Aligned_cols=123 Identities=10% Similarity=0.037 Sum_probs=83.1
Q ss_pred hHHHHHHhccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChH
Q 043637 81 NRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELG 160 (693)
Q Consensus 81 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 160 (693)
..+++.+...++++.|+.+|+++.+.++.....+++.+...++-.+|++++++..+.. +-|...+..-.+.|...++++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence 3455666666777777777777777666666667777777777777777777776542 345555555566666777777
Q ss_pred HHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccC
Q 043637 161 VSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQ 205 (693)
Q Consensus 161 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 205 (693)
.|.++.+++.+.. +.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 252 lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 252 LALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777777777653 3344567777777777777777777666665
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.96 E-value=1.4e-05 Score=47.64 Aligned_cols=33 Identities=24% Similarity=0.505 Sum_probs=28.6
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 043637 210 VSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRP 242 (693)
Q Consensus 210 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 242 (693)
.+|+.+|.++++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888999999998888877
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.93 E-value=0.00015 Score=58.94 Aligned_cols=104 Identities=13% Similarity=0.060 Sum_probs=62.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHhHHHHH
Q 043637 580 TFHGILLACIHEGNVKLALQFFDSMRCKYGIIP-QLEHYECMIKLYCRYGYMKELEDFVNRMP-FNPT----VPMLRKIF 653 (693)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~ 653 (693)
++..+...+.+.|++++|.+.++.+....+-.+ ....+..++.++.+.|++++|...++++. ..|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445555666666777777777766664211111 13345556666777777777777776653 1122 33455666
Q ss_pred HHHHhcCCccHHHHHHHHHhhcCCCCCcch
Q 043637 654 DKCRKNGYATLGEWAARRLNELNPWAPFQF 683 (693)
Q Consensus 654 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 683 (693)
.++...|+.++|...++.+++..|+++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 677777777777777777777777665543
No 149
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.88 E-value=0.05 Score=57.14 Aligned_cols=216 Identities=13% Similarity=0.109 Sum_probs=130.8
Q ss_pred hcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHH--hccCChhhHHHhhccCCC---CCcccHHHHHHHHHhCCChhhH
Q 043637 53 ASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECY--GKCGNLDDARGLFDEMPE---RDGGSWNAMLGAYTQNGFPGRT 127 (693)
Q Consensus 53 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a 127 (693)
...+++..|..-...+.+.- |+. .+..++.++ .+.|+.++|..+++.... .|..+...+-.+|...++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34577888888888877664 332 233444444 478999999999987754 3677888999999999999999
Q ss_pred HHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCC----------CHHHH
Q 043637 128 LELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCM----------VMTDA 197 (693)
Q Consensus 128 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g----------~~~~A 197 (693)
..+|++.... -|+..-...+..++.+.+++.+-.+.-=++-+ .++.+...+=++++.+...- -..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999999876 57788888888899988887665555444444 23445555555555544321 11223
Q ss_pred HHHHhccCCCC--ccc---HHHHHHHHHhcCCchHHHHHHH-HHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHH
Q 043637 198 RRMFDDIQNKN--AVS---WNVIVRRYLVAGNGKEAVVMFF-KMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVII 271 (693)
Q Consensus 198 ~~~~~~~~~~~--~~~---~~~li~~~~~~~~~~~a~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 271 (693)
.+.++.+.+.. ..+ .......+-..|++++|++++. .....-...+...-+.-+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 44444444322 111 1111233345566777777763 33222222233333344455555566666666555555
Q ss_pred Hhc
Q 043637 272 KID 274 (693)
Q Consensus 272 ~~g 274 (693)
..|
T Consensus 254 ~k~ 256 (932)
T KOG2053|consen 254 EKG 256 (932)
T ss_pred HhC
Confidence 554
No 150
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.88 E-value=0.00047 Score=70.83 Aligned_cols=140 Identities=13% Similarity=-0.034 Sum_probs=99.6
Q ss_pred CCCHHHHHHHHHHHHhC--C---ChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhcc--------CcHHHHHHHHHHhH
Q 043637 540 SLDVIICNSMILGFCHN--E---RGREALEVFGLMKKEGIKPDH-ITFHGILLACIHE--------GNVKLALQFFDSMR 605 (693)
Q Consensus 540 ~~~~~~~~~l~~~~~~~--g---~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~--------g~~~~A~~~~~~~~ 605 (693)
+.+...|..++++.... + +.+.|..+|++..+ ..|+. ..|..+..++... +++..+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 56667777777664432 2 37789999999999 78875 4555444433221 22344555555443
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCc
Q 043637 606 CKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPF 681 (693)
Q Consensus 606 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 681 (693)
.......++..|..+.-.+...|++++|...++++. .+|+...|..++..+...|+.++|...+++++.++|.+|.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 211244456778878777778899999999999885 4667778888899999999999999999999999998774
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.87 E-value=0.00092 Score=56.31 Aligned_cols=117 Identities=11% Similarity=0.055 Sum_probs=57.5
Q ss_pred cCChHHHHHHHHHhhhCCCCC---HHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHH
Q 043637 456 RGQSEEAMTSFSEMQWETRPS---KFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAI 532 (693)
Q Consensus 456 ~~~~~~a~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 532 (693)
.++...+.+.++.+....+.+ ......+...+...|++++|...|+.+......+...
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~------------------- 84 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELK------------------- 84 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH-------------------
Confidence 555666666666665544222 2223334445555666666666666666544222211
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHH
Q 043637 533 RVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDS 603 (693)
Q Consensus 533 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 603 (693)
......+...+...|++++|+..++..... ......+.....++.+.|++++|...|+.
T Consensus 85 ----------~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 85 ----------PLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred ----------HHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 112233445555556666666665442221 11223334444566666666666666654
No 152
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.86 E-value=0.00012 Score=71.85 Aligned_cols=102 Identities=10% Similarity=0.004 Sum_probs=73.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRY 627 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 627 (693)
-...+...|++++|++.|++.++ +.|+ ...|..+..+|...|++++|+..++++.+ -.+.+...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHh
Confidence 35566777888888888888888 5664 46677777888888888888888888874 2333566777788888888
Q ss_pred CChHHHHHHHHhCC-CCCCHHhHHHHHH
Q 043637 628 GYMKELEDFVNRMP-FNPTVPMLRKIFD 654 (693)
Q Consensus 628 g~~~~A~~~~~~~~-~~~~~~~~~~l~~ 654 (693)
|++++|+..|++.. ..|+.+....++.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 88888888888774 3444443333333
No 153
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.78 E-value=3.8e-05 Score=54.22 Aligned_cols=61 Identities=13% Similarity=-0.029 Sum_probs=46.4
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 620 MIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 620 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
+...+.+.|++++|+..|++.. .+.+...+..++.++...|++++|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567788888888888888774 233555777788888888899999999999999888775
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.74 E-value=0.00028 Score=54.56 Aligned_cols=91 Identities=14% Similarity=0.030 Sum_probs=39.5
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCc
Q 043637 585 LLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYA 662 (693)
Q Consensus 585 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 662 (693)
...+...|++++|...++++.+ ..+.+...+..+...+...|++++|.+.+++.. .+.+...+..+...+...|+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 3344444444444444444432 111222333444444444444444444444332 122223444444455555555
Q ss_pred cHHHHHHHHHhhcCC
Q 043637 663 TLGEWAARRLNELNP 677 (693)
Q Consensus 663 ~~A~~~~~~~~~~~p 677 (693)
++|...++.+++..|
T Consensus 85 ~~a~~~~~~~~~~~~ 99 (100)
T cd00189 85 EEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHccCC
Confidence 555555555555544
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.70 E-value=0.0011 Score=63.23 Aligned_cols=147 Identities=13% Similarity=0.176 Sum_probs=78.2
Q ss_pred HHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHHHH----CCCCCC--hHHHHHHHHHHhcc
Q 043637 519 VEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHN-ERGREALEVFGLMKK----EGIKPD--HITFHGILLACIHE 591 (693)
Q Consensus 519 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~----~g~~p~--~~~~~~l~~~~~~~ 591 (693)
++.|...|++..|-..+ ..+...|... |++++|++.|++..+ .| .+. ..++..+...+.+.
T Consensus 101 ~~~y~~~G~~~~aA~~~-----------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCL-----------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHH-----------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence 34455555555554443 3456666666 777777777777654 22 221 24455666777888
Q ss_pred CcHHHHHHHHHHhHHhcCCCC-----Chh-HHHHHHHHHHhcCChHHHHHHHHhCC-CCC----C--HHhHHHHHHHHHh
Q 043637 592 GNVKLALQFFDSMRCKYGIIP-----QLE-HYECMIKLYCRYGYMKELEDFVNRMP-FNP----T--VPMLRKIFDKCRK 658 (693)
Q Consensus 592 g~~~~A~~~~~~~~~~~~~~p-----~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~--~~~~~~l~~~~~~ 658 (693)
|++++|.++|+++... .... +.. .+-..+-++...|+...|...+++.. ..| + ..+...++.+|..
T Consensus 169 ~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp T-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 8888888888877642 2211 111 22333445666788888888887653 111 1 2255566666654
Q ss_pred c--CCccHHHHHHHHHhhcCCC
Q 043637 659 N--GYATLGEWAARRLNELNPW 678 (693)
Q Consensus 659 ~--g~~~~A~~~~~~~~~~~p~ 678 (693)
. ..+..+..-|..+.+++|.
T Consensus 248 ~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 248 GDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp T-CCCHHHHCHHHTTSS---HH
T ss_pred CCHHHHHHHHHHHcccCccHHH
Confidence 2 2455555555555555553
No 156
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.69 E-value=0.001 Score=63.00 Aligned_cols=134 Identities=13% Similarity=0.101 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 043637 544 IICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLA-CIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIK 622 (693)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 622 (693)
.+|-.++....+.+..+.|..+|++..+.+ ..+...|...... +...++.+.|.++|+...+ .+..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 467788888888888999999999998642 2234555555544 3335777779999999996 45667788888999
Q ss_pred HHHhcCChHHHHHHHHhCCC-CC----CHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 623 LYCRYGYMKELEDFVNRMPF-NP----TVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 623 ~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
.+.+.|+.+.|..+|++... -+ ...+|..++..-.+.|+.+....+.+++.+..|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999998852 22 345899999999999999999999999999999744
No 157
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.63 E-value=0.00087 Score=58.46 Aligned_cols=117 Identities=13% Similarity=0.041 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 043637 543 VIICNSMILGFCHNERGREALEVFGLMKKEGIKPD--HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECM 620 (693)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 620 (693)
...+..+...+...|++++|...|++..+.+-.+. ...+..+...+.+.|++++|...++++.+ -.+-+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHH
Confidence 34567777778888888888888888876432222 25677777888888888888888888774 222345556666
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCC
Q 043637 621 IKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWA 679 (693)
Q Consensus 621 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 679 (693)
...|...|+...+..-+++.. ..+++|.+.++++++.+|++
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh
Confidence 777777777666554332221 13577889999999999976
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.63 E-value=0.00013 Score=54.56 Aligned_cols=79 Identities=8% Similarity=0.170 Sum_probs=50.7
Q ss_pred CCChHHHHHHHHHHHHCCCCC---ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 043637 556 NERGREALEVFGLMKKEGIKP---DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKE 632 (693)
Q Consensus 556 ~g~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 632 (693)
.|+++.|+.+++++.+. .| +...+..+..++.+.|++++|..+++.... +. .+......++++|.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~--~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~--~~-~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLEL--DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKL--DP-SNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHH--HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTH--HH-CHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCC--CC-CCHHHHHHHHHHHHHhCCHHH
Confidence 46778888888888773 44 234455567788888888888888877211 11 223444455777888888888
Q ss_pred HHHHHHh
Q 043637 633 LEDFVNR 639 (693)
Q Consensus 633 A~~~~~~ 639 (693)
|++.|++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 8887764
No 159
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.63 E-value=7.3e-05 Score=43.29 Aligned_cols=31 Identities=29% Similarity=0.451 Sum_probs=24.5
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 043637 210 VSWNVIVRRYLVAGNGKEAVVMFFKMLREDI 240 (693)
Q Consensus 210 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 240 (693)
++|+.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888877664
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.62 E-value=0.0001 Score=55.22 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=52.8
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCCccHHHHHH
Q 043637 591 EGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTV-PMLRKIFDKCRKNGYATLGEWAA 669 (693)
Q Consensus 591 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 669 (693)
.|+++.|+.+++++.+.....|+...+..++.+|.+.|++++|..++++....+.. ...-.++.++.+.|++++|+..+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 57788888888888764222234445555788888888888888888774322322 33334566777788888888877
Q ss_pred HHH
Q 043637 670 RRL 672 (693)
Q Consensus 670 ~~~ 672 (693)
+++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 753
No 161
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.61 E-value=3.9e-05 Score=54.79 Aligned_cols=59 Identities=17% Similarity=0.287 Sum_probs=35.4
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHhH
Q 043637 589 IHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVPML 649 (693)
Q Consensus 589 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~ 649 (693)
.+.|++++|+++++++.. ..+-+......++.+|.+.|++++|..+++++. ..|+.+.+
T Consensus 2 l~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HHTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hhccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 356677777777777764 233355556666677777777777777776664 34443443
No 162
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.60 E-value=7.9e-05 Score=43.14 Aligned_cols=30 Identities=27% Similarity=0.596 Sum_probs=21.9
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHhhhCCC
Q 043637 110 SWNAMLGAYTQNGFPGRTLELFLDMNHSGV 139 (693)
Q Consensus 110 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 139 (693)
+||.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777776653
No 163
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.60 E-value=0.0019 Score=53.23 Aligned_cols=103 Identities=7% Similarity=-0.049 Sum_probs=73.3
Q ss_pred HhcCC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 043637 535 FKESS-SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP 612 (693)
Q Consensus 535 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 612 (693)
+..+. +.+....-.+..-+...|++++|.++|+-+.. +.|.. .-|..|.-+|-..|++++|+..+..+.. --+-
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~d 101 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKID 101 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCC
Confidence 33444 34444555566677788888888888888877 66754 5566666777778888888888888874 2234
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 613 QLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 613 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
|+..+-.+..++...|+.+.|++.|+...
T Consensus 102 dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 102 APQAPWAAAECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57777788888888888888888887653
No 164
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.59 E-value=0.00013 Score=52.22 Aligned_cols=65 Identities=12% Similarity=0.058 Sum_probs=48.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcC-CccHHHHHHHHHhhcCC
Q 043637 613 QLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNG-YATLGEWAARRLNELNP 677 (693)
Q Consensus 613 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 677 (693)
++..|..+...+.+.|++++|+..|++.. .+.++..+..+..++...| ++++|...++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34566777777777778888777777664 3445667777778888888 68888888888888887
No 165
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.57 E-value=0.0027 Score=52.38 Aligned_cols=94 Identities=14% Similarity=0.034 Sum_probs=76.5
Q ss_pred HHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccC
Q 043637 517 ALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEG 592 (693)
Q Consensus 517 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g 592 (693)
.+...+...|++++|..+|+-.. +.+..-|-.|..++...|++++|+..|..... +.|| +..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcC
Confidence 34455667888888888888766 55666788899999999999999999999999 5664 688888999999999
Q ss_pred cHHHHHHHHHHhHHhcCCCC
Q 043637 593 NVKLALQFFDSMRCKYGIIP 612 (693)
Q Consensus 593 ~~~~A~~~~~~~~~~~~~~p 612 (693)
+.+.|.+.|+..+...+-.|
T Consensus 118 ~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 118 NVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred CHHHHHHHHHHHHHHhccCh
Confidence 99999999999886444333
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.56 E-value=0.01 Score=56.55 Aligned_cols=106 Identities=16% Similarity=0.149 Sum_probs=61.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCC---C---CCH-HHHHHHHHHhcccCChHHHHHHHHHHHHh--CCCcc--hh
Q 043637 445 SWNAVLTGYARRGQSEEAMTSFSEMQWET---R---PSK-FTFETLLAACANISSLEQGKQIHCFVIRN--CYEIN--VV 513 (693)
Q Consensus 445 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~---p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~ 513 (693)
.+..+...+.+.|++++|.++|+++.... + .+. ..|...+-++...||...|...+++.... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 35556777888888888888888875443 1 111 12233333555568888888888877653 22222 34
Q ss_pred HHHHHHHHHHh--hCCHHHHHHHHhcCCCCCHHHHHHHH
Q 043637 514 CRGALVEVYTK--CCCLEYAIRVFKESSSLDVIICNSMI 550 (693)
Q Consensus 514 ~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~l~ 550 (693)
....|++++.. ...++.|..-|+.+.+.|...-..|+
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~ 275 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLL 275 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHH
Confidence 45566666654 35677788888887777766544443
No 167
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.55 E-value=0.0021 Score=52.10 Aligned_cols=95 Identities=14% Similarity=0.037 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKPD----HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP-QLEHYEC 619 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~ 619 (693)
++..++..+...|++++|.+.|+++.+. .|+ ...+..+..++.+.|+++.|...++.+.....-.| ....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4555667777788888888888888763 343 23555677788888888888888888765322211 2455677
Q ss_pred HHHHHHhcCChHHHHHHHHhCC
Q 043637 620 MIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 620 l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
+..++.+.|+.++|...++++.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHH
Confidence 7778888888888888887764
No 168
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.53 E-value=0.00079 Score=51.13 Aligned_cols=80 Identities=15% Similarity=0.056 Sum_probs=67.0
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHhhhCCC-CCCHhhHHHHHHHhhccC--------ChHHHHHHHHHHHHhCCCCchhhH
Q 043637 111 WNAMLGAYTQNGFPGRTLELFLDMNHSGV-SANQITYANVLRSSAEEL--------ELGVSKQLHGLIVKRGFCGNVILE 181 (693)
Q Consensus 111 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 181 (693)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++. .+-....+++.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666777999999999999999999 999999999999988654 244567889999999999999999
Q ss_pred hHHHHHhhc
Q 043637 182 SSLVDAYGK 190 (693)
Q Consensus 182 ~~l~~~~~~ 190 (693)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887654
No 169
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.49 E-value=0.09 Score=53.56 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=99.2
Q ss_pred HcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCcccHHHHHHHHHhCCCHHHHHHHHH
Q 043637 291 KCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPE-----RNVISWNAMLAGYTRSLLWKEALDFVF 365 (693)
Q Consensus 291 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~ 365 (693)
--|.+++|++++-++.++|. .|..+.+.|++-...++++.-.. .-...|+.+...+.....|++|.+.|.
T Consensus 746 ~~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 746 FYGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hhcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999988888764 35566677787777777766433 123568888888888888888888876
Q ss_pred HHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhh
Q 043637 366 LMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVS 445 (693)
Q Consensus 366 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 445 (693)
.-... ...+.++.+...+++.+.+.. .++.+....-.+.+++.+.|.-++|.+.+.......
T Consensus 821 ~~~~~---------e~~~ecly~le~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk---- 882 (1189)
T KOG2041|consen 821 YCGDT---------ENQIECLYRLELFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK---- 882 (1189)
T ss_pred hccch---------HhHHHHHHHHHhhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH----
Confidence 53221 223444444444444433332 245566777778888888888888866665543322
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHh
Q 043637 446 WNAVLTGYARRGQSEEAMTSFSEM 469 (693)
Q Consensus 446 ~~~l~~~~~~~~~~~~a~~~~~~~ 469 (693)
.-+..|...+++.+|.++-++.
T Consensus 883 --aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 883 --AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhc
Confidence 1244566666777777766554
No 170
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.46 E-value=0.17 Score=51.64 Aligned_cols=220 Identities=13% Similarity=0.027 Sum_probs=109.8
Q ss_pred hhhHHHhhccCCCCCcccHHHHHHHHHhCCChhhHHHHHHHhhh-CCCCCCHhhHHHH------HHHhhccCChHHHHHH
Q 043637 93 LDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNH-SGVSANQITYANV------LRSSAEELELGVSKQL 165 (693)
Q Consensus 93 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~l------l~~~~~~~~~~~a~~~ 165 (693)
+++|.++.+. .|.+..|..+.......-..+-|...|-+... .|++.-...-... ....+-.|++++|+++
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 3444444332 34455566555555555555555555544332 1221111000000 0111234667777777
Q ss_pred HHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCC-----CcccHHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 043637 166 HGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNK-----NAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDI 240 (693)
Q Consensus 166 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 240 (693)
+-++-+.. ..|..+.+.||+-...++++.-... -..+|+.+...++....|++|.+.|..-..
T Consensus 757 yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--- 824 (1189)
T KOG2041|consen 757 YLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--- 824 (1189)
T ss_pred hhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---
Confidence 65554332 3455666777777777776654321 123477777777777777777777665321
Q ss_pred CCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHH
Q 043637 241 RPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGY 320 (693)
Q Consensus 241 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~ 320 (693)
. ...+.++.+..++++-+.+.. .++.+....-.+.+++.+.|.-++|...+-+-..|. ..+..|
T Consensus 825 ---~---e~~~ecly~le~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tC 888 (1189)
T KOG2041|consen 825 ---T---ENQIECLYRLELFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTC 888 (1189)
T ss_pred ---h---HhHHHHHHHHHhhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHH
Confidence 0 112222322222222222211 224455555666777777777777766654433332 234556
Q ss_pred HhcCCHHHHHHHHhhCCCCCcc
Q 043637 321 AISGRIREARELFNEMPERNVI 342 (693)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~~~~ 342 (693)
...++|.+|.++-+...-|.+.
T Consensus 889 v~LnQW~~avelaq~~~l~qv~ 910 (1189)
T KOG2041|consen 889 VELNQWGEAVELAQRFQLPQVQ 910 (1189)
T ss_pred HHHHHHHHHHHHHHhccchhHH
Confidence 6666777777776665544443
No 171
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.45 E-value=0.0018 Score=49.86 Aligned_cols=91 Identities=15% Similarity=0.097 Sum_probs=62.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 043637 546 CNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLY 624 (693)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 624 (693)
+..+...+...|++++|...+++..+ ..|+ ...+..+...+...|++++|.+.++.... -.+.+...+..++..+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHHH
Confidence 44556666777778888888877776 3443 35566666777777888888888877764 2333445667777777
Q ss_pred HhcCChHHHHHHHHhC
Q 043637 625 CRYGYMKELEDFVNRM 640 (693)
Q Consensus 625 ~~~g~~~~A~~~~~~~ 640 (693)
...|+.++|...+++.
T Consensus 79 ~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 79 YKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 7788888887777655
No 172
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.063 Score=51.22 Aligned_cols=154 Identities=10% Similarity=-0.075 Sum_probs=100.9
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcch-hHHHH----------HH
Q 043637 451 TGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINV-VCRGA----------LV 519 (693)
Q Consensus 451 ~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~----------l~ 519 (693)
.++.-.|++++|..+--.+.+....+......=..++...++.+.+..-|++..+.++.... ..... -.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhh
Confidence 34566788888877776666555444444433344455667778888777777664432111 11111 11
Q ss_pred HHHHhhCCHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhcc
Q 043637 520 EVYTKCCCLEYAIRVFKESS-------SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHE 591 (693)
Q Consensus 520 ~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~ 591 (693)
+-..+.|++.+|.+.|.+.. .++...|.....+..+.|+.++|+.--++..+ +.|.. ..|..-..++...
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHH
Confidence 22346788899999998876 34455777778888889999999988888777 55543 3444444677778
Q ss_pred CcHHHHHHHHHHhHH
Q 043637 592 GNVKLALQFFDSMRC 606 (693)
Q Consensus 592 g~~~~A~~~~~~~~~ 606 (693)
++|++|.+-++...+
T Consensus 335 e~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHh
Confidence 889999988888875
No 173
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.43 E-value=0.0012 Score=64.94 Aligned_cols=118 Identities=9% Similarity=0.080 Sum_probs=85.3
Q ss_pred CCCchhhhHHHHHHhccCChhhHHHhhccCCC-C-----CcccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHH
Q 043637 74 TPPVFLLNRAIECYGKCGNLDDARGLFDEMPE-R-----DGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYA 147 (693)
Q Consensus 74 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 147 (693)
+.+......+++.+...-+++.+..++-+... | -..+..++++.|.+.|..+.++++++.=...|+-||..|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 34555556677777777777777777766643 2 23455688888888888888888888888888888888888
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcC
Q 043637 148 NVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKC 191 (693)
Q Consensus 148 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 191 (693)
.||..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888877777666666666555555554
No 174
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.43 E-value=0.13 Score=49.47 Aligned_cols=111 Identities=18% Similarity=0.132 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc
Q 043637 514 CRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGN 593 (693)
Q Consensus 514 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 593 (693)
+.+..+.-+...|+...|.++-.+..-||...|..-+.+++..++|++-.++... +-++..|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444455556677777787777777777777788888888888887766554321 1134667777778888888
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 594 VKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 594 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
..+|..+..++. +..-+..|.+.|++.+|.+.--+.+
T Consensus 253 ~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 253 KKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 777777776531 1445677777788777776655443
No 175
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.40 E-value=0.0027 Score=55.01 Aligned_cols=118 Identities=13% Similarity=0.048 Sum_probs=79.5
Q ss_pred CCCHhhHHHHHHHhh-----ccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHH
Q 043637 140 SANQITYANVLRSSA-----EELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNV 214 (693)
Q Consensus 140 ~~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 214 (693)
..+..+|..++..+. +.|..+-....+..|.+.|++.|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~---------- 111 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE---------- 111 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH----------
Confidence 345566666666555 457788888888999999999999999999988754 3221 11111111
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCc-chhHHHHHHHHH
Q 043637 215 IVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSP-YEGMQIHGVIIK 272 (693)
Q Consensus 215 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~ 272 (693)
.- -.-.+-+-|++++++|...|+-||..|+..+++.+.+.+.. ....++.=+|.+
T Consensus 112 -F~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 112 -FM--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred -hc--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 11 11245577899999999999999999999999999876653 234444444433
No 176
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.40 E-value=0.016 Score=55.94 Aligned_cols=158 Identities=14% Similarity=0.035 Sum_probs=86.4
Q ss_pred HHHHhhCCHHHHHHHHhcCCCC-------CHHHHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHh
Q 043637 520 EVYTKCCCLEYAIRVFKESSSL-------DVIICNSMILGFCH---NERGREALEVFGLMKKEGIKPDHITFHGILLACI 589 (693)
Q Consensus 520 ~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 589 (693)
-.|....+++...++++.+..+ ...+--..+-++-+ .|+.++|+.++..+....-.+++.+|..+.+.|-
T Consensus 149 lSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 149 LSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYK 228 (374)
T ss_pred HHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 3444445555555555544411 11122233444445 6777777777777555444556666666654442
Q ss_pred ----c-----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH----HHHHH---HhC-------CCCCCH
Q 043637 590 ----H-----EGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKE----LEDFV---NRM-------PFNPTV 646 (693)
Q Consensus 590 ----~-----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----A~~~~---~~~-------~~~~~~ 646 (693)
. ....++|+..+.+.- .+.|+...-..++-.+.-.|...+ ..++- ... ....+-
T Consensus 229 D~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dY 305 (374)
T PF13281_consen 229 DLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDY 305 (374)
T ss_pred HHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccH
Confidence 1 223566777776653 344554443334444444443221 12211 110 023445
Q ss_pred HhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 647 PMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 647 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
..+.++++++...||.++|.++++++.++.|+.-
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 5667788999999999999999999999988543
No 177
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.34 E-value=0.0035 Score=47.73 Aligned_cols=79 Identities=11% Similarity=-0.074 Sum_probs=65.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHhhHHHHHHHHhccc--------chhhHHHHHHHHHHhCCCCchhHHH
Q 043637 345 NAMLAGYTRSLLWKEALDFVFLMRKTTK-DIDQVTLGLILNVCAGLS--------EIKMGKEVHGFIHRNDYSSNIFVSN 415 (693)
Q Consensus 345 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (693)
...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.+++. +.-....+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666777999999999999999999 999999999999887653 2445677889999999999999999
Q ss_pred HHHHHHHH
Q 043637 416 ALLDMYRK 423 (693)
Q Consensus 416 ~l~~~~~~ 423 (693)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887765
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.32 E-value=0.081 Score=48.82 Aligned_cols=61 Identities=13% Similarity=0.037 Sum_probs=41.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCHHH---HHHHHHHhcccCChHHHHHHHHHHHHhCCC
Q 043637 449 VLTGYARRGQSEEAMTSFSEMQWETRPSKFT---FETLLAACANISSLEQGKQIHCFVIRNCYE 509 (693)
Q Consensus 449 l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 509 (693)
....+.+.|++++|.+.|+++....+-+... ...+..++.+.++++.|...+++.++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 3445566788888888888876654322222 245567778888888888888888875443
No 179
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.32 E-value=0.0025 Score=62.76 Aligned_cols=116 Identities=11% Similarity=0.053 Sum_probs=85.6
Q ss_pred chhhHhHHHHHhhcCCCHHHHHHHHhccCC-C-----CcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHH
Q 043637 177 NVILESSLVDAYGKCMVMTDARRMFDDIQN-K-----NAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANA 250 (693)
Q Consensus 177 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 250 (693)
+......+++.+....+++.+..++-+... | -..+..++|+.|...|..+.++.+++.=...|+-||..|++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 444445555555555566666665554432 1 2334568889999999999999999988889999999999999
Q ss_pred HHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHc
Q 043637 251 LFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKC 292 (693)
Q Consensus 251 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 292 (693)
++.+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999988888877766666666666666655
No 180
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.30 E-value=0.079 Score=53.44 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=29.4
Q ss_pred HHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHH
Q 043637 166 HGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKML 236 (693)
Q Consensus 166 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 236 (693)
++++++.|-.|+... +...++-.|++.+|.++|.+ .|.-..|+++|..|+
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlR 672 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLR 672 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHH
Confidence 455666665565543 33445566777777777644 455556666666553
No 181
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.30 E-value=0.0023 Score=58.05 Aligned_cols=99 Identities=16% Similarity=0.127 Sum_probs=76.9
Q ss_pred HhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCC---HHHHHHHHHHHHhCCChHHH
Q 043637 486 ACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLD---VIICNSMILGFCHNERGREA 562 (693)
Q Consensus 486 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 562 (693)
-+.+.+++.+|...|.+.+...+. ++..|.--..+|.+.|.++.|++-.+.....| ..+|..|..+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 345677888888888888875444 66667777888888888888888888777444 34788888999999999999
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHH
Q 043637 563 LEVFGLMKKEGIKPDHITFHGILLA 587 (693)
Q Consensus 563 ~~~~~~m~~~g~~p~~~~~~~l~~~ 587 (693)
++.|++.++ +.|+..+|..=+..
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHH
Confidence 999999888 88988777666543
No 182
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.29 E-value=0.18 Score=48.40 Aligned_cols=106 Identities=9% Similarity=0.079 Sum_probs=56.9
Q ss_pred hHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCC
Q 043637 246 TFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGR 325 (693)
Q Consensus 246 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 325 (693)
+.+..+.-|...|+...|.++..+.. .|+..-|...+.+++..+++++-..+-.. ++++..|..++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCC
Confidence 44444455555555555554433331 35555566666666666666655554433 3455566666666666666
Q ss_pred HHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHHH
Q 043637 326 IREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDF 363 (693)
Q Consensus 326 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 363 (693)
..+|......+ .+..-+..|.+.|++.+|.+.
T Consensus 253 ~~eA~~yI~k~------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC------ChHHHHHHHHHCCCHHHHHHH
Confidence 66666555552 224445555666666655544
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.29 E-value=0.0078 Score=47.89 Aligned_cols=94 Identities=11% Similarity=0.053 Sum_probs=70.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHH
Q 043637 548 SMILGFCHNERGREALEVFGLMKKEGIKPD--HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP-QLEHYECMIKLY 624 (693)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 624 (693)
....++-..|+.++|+.+|++..+.|+... ...+..+...+...|++++|..++++....+.-.+ +......+.-++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 355677788999999999999999887765 35677777899999999999999999886422211 222223345577
Q ss_pred HhcCChHHHHHHHHhCC
Q 043637 625 CRYGYMKELEDFVNRMP 641 (693)
Q Consensus 625 ~~~g~~~~A~~~~~~~~ 641 (693)
...|+.++|+.++-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 88999999998886543
No 184
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.28 E-value=0.0073 Score=52.67 Aligned_cols=88 Identities=14% Similarity=0.049 Sum_probs=68.4
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCC--CCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHH
Q 043637 511 NVVCRGALVEVYTKCCCLEYAIRVFKESS--SLD----VIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHG 583 (693)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ 583 (693)
....+..+...+...|++++|...+++.. .++ ...+..+...+.+.|++++|...+++..+ ..|+ ...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHH
Confidence 34556777888899999999999999876 222 35788899999999999999999999998 5675 466667
Q ss_pred HHHHHhccCcHHHHHHH
Q 043637 584 ILLACIHEGNVKLALQF 600 (693)
Q Consensus 584 l~~~~~~~g~~~~A~~~ 600 (693)
+...+...|+...+..-
T Consensus 112 lg~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHHcCChHhHhhC
Confidence 77888887775444433
No 185
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.27 E-value=0.0027 Score=58.84 Aligned_cols=101 Identities=10% Similarity=0.043 Sum_probs=61.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCC---CHHhHHHHHH
Q 043637 581 FHGILLACIHEGNVKLALQFFDSMRCKYGIIP-QLEHYECMIKLYCRYGYMKELEDFVNRMP--FNP---TVPMLRKIFD 654 (693)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~---~~~~~~~l~~ 654 (693)
|...+....+.|++++|...|+.+...+.-.+ .+..+..++..|...|++++|...|+++. .+. .+..+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444444555777777777777765322211 12345566777777777777777777664 111 1234444566
Q ss_pred HHHhcCCccHHHHHHHHHhhcCCCCCc
Q 043637 655 KCRKNGYATLGEWAARRLNELNPWAPF 681 (693)
Q Consensus 655 ~~~~~g~~~~A~~~~~~~~~~~p~~~~ 681 (693)
.+...|+.++|...++.+++..|+...
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 666778888888888888888886553
No 186
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.26 E-value=0.0045 Score=60.99 Aligned_cols=86 Identities=8% Similarity=-0.009 Sum_probs=72.9
Q ss_pred HHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcH
Q 043637 519 VEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNV 594 (693)
Q Consensus 519 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~ 594 (693)
...+...|++++|+..|++.. +.+...|..+..++...|++++|+..++++++ +.|+ ...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCCH
Confidence 455677899999999998876 55677888888999999999999999999998 5674 57788888899999999
Q ss_pred HHHHHHHHHhHH
Q 043637 595 KLALQFFDSMRC 606 (693)
Q Consensus 595 ~~A~~~~~~~~~ 606 (693)
++|+..|+++.+
T Consensus 87 ~eA~~~~~~al~ 98 (356)
T PLN03088 87 QTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 187
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.26 E-value=0.0032 Score=54.72 Aligned_cols=61 Identities=16% Similarity=0.073 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKPD--HITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
.|..+...+...|++++|+..|++.....-.|. ..++..+...+...|++++|+..+++..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555666666666665554211111 1345555555556666666666665555
No 188
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.25 E-value=0.0081 Score=56.94 Aligned_cols=140 Identities=10% Similarity=0.023 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHH-hcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 043637 444 VSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAA-CANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVY 522 (693)
Q Consensus 444 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (693)
.+|..++...-+.+..+.|..+|.+....+..+...|...... +...++.+.|..+|+...+. +..+...+...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 3566777777777778888888888875544444445444444 33346666688888887764 233566677777777
Q ss_pred HhhCCHHHHHHHHhcCC--CCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 043637 523 TKCCCLEYAIRVFKESS--SLD----VIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILL 586 (693)
Q Consensus 523 ~~~~~~~~A~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 586 (693)
.+.++.+.|..+|++.. -+. ...|..++.--.+.|+.+.+.++.+++.+ .-|+......+++
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSD 148 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHC
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHH
Confidence 77788888888887766 122 24777777777777888888888777777 4555444444443
No 189
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.23 E-value=0.0019 Score=55.86 Aligned_cols=96 Identities=16% Similarity=0.236 Sum_probs=72.2
Q ss_pred HhhccC--CCCCcccHHHHHHHHHh-----CCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhcc--------------
Q 043637 98 GLFDEM--PERDGGSWNAMLGAYTQ-----NGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEE-------------- 156 (693)
Q Consensus 98 ~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-------------- 156 (693)
..|+.. ...+..+|..++..|.+ .|.++-....+..|.+-|+.-|..+|+.||..+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 44566677777777754 456666777888888889999999999988866542
Q ss_pred --CChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCC
Q 043637 157 --LELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMV 193 (693)
Q Consensus 157 --~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 193 (693)
.+.+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346688999999999999999999999998877654
No 190
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.27 Score=50.89 Aligned_cols=340 Identities=11% Similarity=0.016 Sum_probs=173.0
Q ss_pred cCCCCCChhHHHHH-----HHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccC---ChhhHHHhhccCCC-
Q 043637 35 KSDEPVSYSLYAHL-----FQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCG---NLDDARGLFDEMPE- 105 (693)
Q Consensus 35 ~~~~~~~~~~~~~l-----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~- 105 (693)
+-|+|.+...|..| +..+...+.+..|.++...+-..-.+. ..++......+.+.. +-+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 34778887777764 666777788888888877763222122 455656666666542 22333333344444
Q ss_pred -CCcccHHHHHHHHHhCCChhhHHHHHHHhhhCCC----CCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhh
Q 043637 106 -RDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGV----SANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVIL 180 (693)
Q Consensus 106 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 180 (693)
....+|..+.+..-..|+.+.|..+++.=...+- -.+..-+...+.-+...|+.+....++-.+...- +...
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~ 580 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSS 580 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHH
Confidence 4566788888888888999888888765443321 1223345566666667777776666655554321 1111
Q ss_pred HhHHHHHhhcCCCHHHHHHHHhccCC-CCcccHHHHHHHHHhcCCchHHHHHHHHH---HHCCCCCCHHhHHHHHHHhcC
Q 043637 181 ESSLVDAYGKCMVMTDARRMFDDIQN-KNAVSWNVIVRRYLVAGNGKEAVVMFFKM---LREDIRPLNFTFANALFACSF 256 (693)
Q Consensus 181 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m---~~~g~~p~~~~~~~ll~~~~~ 256 (693)
+...+ .+...|..++....+ .|..+ +..+.+.++-..++..|..- ...-+.+-........+++++
T Consensus 581 l~~~l------~~~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~ 650 (829)
T KOG2280|consen 581 LFMTL------RNQPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAK 650 (829)
T ss_pred HHHHH------HhchhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhh
Confidence 11111 122223333322221 11110 01111122222222211110 000011222222333334443
Q ss_pred CCCcch-hHH---------HHHHHH-HhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCC
Q 043637 257 LSSPYE-GMQ---------IHGVII-KIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGR 325 (693)
Q Consensus 257 ~~~~~~-a~~---------~~~~~~-~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 325 (693)
...... ++. +.+.+. +.|.....-+.+-.+.-+..-|+..+|.++-.+..-||...|-.-+.+++..++
T Consensus 651 sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~k 730 (829)
T KOG2280|consen 651 SKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKK 730 (829)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhh
Confidence 333111 111 111111 112223333344444555666777777777777777777777777777777777
Q ss_pred HHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHH
Q 043637 326 IREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVH 399 (693)
Q Consensus 326 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 399 (693)
+++-+++-..... +.-|...+.+|.+.|+.++|.+++.+... . .-...++...|++.+|.++-
T Consensus 731 weeLekfAkskks--PIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 731 WEELEKFAKSKKS--PIGYLPFVEACLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHHHHhccCC--CCCchhHHHHHHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHH
Confidence 7766665554433 56667777777777777777777654321 1 14455666666666665543
No 191
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.19 E-value=0.00046 Score=43.74 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhc
Q 043637 648 MLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNR 689 (693)
Q Consensus 648 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 689 (693)
.+..+...|...|++++|+..++++++.+|+|+..+..|+.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 566788999999999999999999999999999998888753
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.18 E-value=0.0014 Score=46.63 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=26.3
Q ss_pred hCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 555 HNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 555 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
..|++++|++.|+++.+ ..| +...+..+..+|.+.|++++|.++++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555566666665555 334 33444455555566666666666665554
No 193
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.18 E-value=0.00079 Score=48.75 Aligned_cols=64 Identities=14% Similarity=-0.004 Sum_probs=46.5
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhh
Q 043637 622 KLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKI 685 (693)
Q Consensus 622 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 685 (693)
..|.+.+++++|+++++++. .+.++..+...+..+...|++++|.+.++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 46677777777777777774 34455567677777788888888888888888888877655443
No 194
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.17 E-value=0.26 Score=47.76 Aligned_cols=133 Identities=14% Similarity=0.104 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHH-HHH
Q 043637 543 VIICNSMILGFCHNERGREALEVFGLMKKEG-IKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHY-ECM 620 (693)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~~l 620 (693)
..+|...+..-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|++.-|..+|+.-.. .+ ||...| ...
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f-~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KF-PDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hC-CCchHHHHHH
Confidence 4467777777777778899999999999988 5677888888887665 5788889999987664 23 444333 556
Q ss_pred HHHHHhcCChHHHHHHHHhCC----CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCC
Q 043637 621 IKLYCRYGYMKELEDFVNRMP----FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWA 679 (693)
Q Consensus 621 ~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 679 (693)
+..+.+-++-+.|..+|+... ...-.++|..++..-..-|+...+...-+++.+..|+.
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 777889999999999998553 23346789999998889999999999999999988864
No 195
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.17 E-value=0.18 Score=50.99 Aligned_cols=94 Identities=10% Similarity=0.064 Sum_probs=63.6
Q ss_pred hcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh
Q 043637 536 KESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLE 615 (693)
Q Consensus 536 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 615 (693)
.++...+..+...+..-+.+...+.-|.++|.+|-+ ...+++.....++|++|..+-+..- .+.||+.
T Consensus 740 rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hP---e~~~dVy 807 (1081)
T KOG1538|consen 740 RKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHP---EFKDDVY 807 (1081)
T ss_pred hhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCc---ccccccc
Confidence 333344445555555556666677778888877655 2356677788888888888877653 4455542
Q ss_pred -----------HHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 616 -----------HYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 616 -----------~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
-|...-++|.++|+..||..+++++.
T Consensus 808 ~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 808 MPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred chHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 24444577899999999999999885
No 196
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.16 E-value=0.064 Score=45.11 Aligned_cols=125 Identities=10% Similarity=0.025 Sum_probs=79.5
Q ss_pred CCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC----CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---hHH
Q 043637 508 YEINVVCRGALVEVYTKCCCLEYAIRVFKESS----SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD---HIT 580 (693)
Q Consensus 508 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~ 580 (693)
..|+....-.|.....+.|+..+|...|++.. -.|......+.++....+++..|...++++.+. +|+ +.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--NPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--CCccCCCCc
Confidence 44555556667777777777777777776654 456666777777777777777777777777663 242 233
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 043637 581 FHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFV 637 (693)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 637 (693)
...+.+.+...|++.+|...|+... ..-|++..-......+.+.|+.++|..-+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~---~~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAI---SYYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHH---HhCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 4445567777777777777777765 34455554444555666777666655433
No 197
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.15 E-value=0.021 Score=58.98 Aligned_cols=60 Identities=10% Similarity=0.088 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 544 IICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
..|..+.......|++++|...+++..+ +.|+...|..+...+...|+.++|.+.++++.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444555555555555555 34554555555555555555555555555554
No 198
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.11 E-value=0.012 Score=51.07 Aligned_cols=100 Identities=12% Similarity=-0.059 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHH
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP-QLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDK 655 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 655 (693)
..|..+...+...|++++|+..+++........+ ...++..+...|.+.|++++|+..+++.. .+.....+..+...
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 4445555566666666666666666653211111 12355666666666666666666666553 22223344444444
Q ss_pred HH-------hcCCcc-------HHHHHHHHHhhcCCC
Q 043637 656 CR-------KNGYAT-------LGEWAARRLNELNPW 678 (693)
Q Consensus 656 ~~-------~~g~~~-------~A~~~~~~~~~~~p~ 678 (693)
+. ..|+++ +|...+++.++.+|+
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 44 445544 455555556666663
No 199
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.019 Score=52.66 Aligned_cols=101 Identities=12% Similarity=-0.049 Sum_probs=66.1
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhCC--CCCCHHhHHH
Q 043637 577 DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYG---YMKELEDFVNRMP--FNPTVPMLRK 651 (693)
Q Consensus 577 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~--~~~~~~~~~~ 651 (693)
|...|..|..+|...|+++.|...|.+..+ -..+++..+..+..++..+. ...++..+|+++. ++.+.....-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 457777777777777777777777777764 33345555666666554322 3456777777764 4555556666
Q ss_pred HHHHHHhcCCccHHHHHHHHHhhcCCCC
Q 043637 652 IFDKCRKNGYATLGEWAARRLNELNPWA 679 (693)
Q Consensus 652 l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 679 (693)
+...+...|++.+|...++.+++..|.+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 6667777777777777777777766543
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.98 E-value=0.14 Score=43.25 Aligned_cols=133 Identities=9% Similarity=-0.028 Sum_probs=73.1
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC--C---CCHHHHHHHHHHHHhC
Q 043637 482 TLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS--S---LDVIICNSMILGFCHN 556 (693)
Q Consensus 482 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~---~~~~~~~~l~~~~~~~ 556 (693)
.+..+....|+..+|...|++....-+.-|....-.+.++....+++..|...+++.- + ..+..-..+.+.+...
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~ 173 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQ 173 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhc
Confidence 3334444444444444444444333333334444444444444444444444444332 0 1122334567788889
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 043637 557 ERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYE 618 (693)
Q Consensus 557 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 618 (693)
|+..+|+..|+.... .-|+...-......+.++|+.+++..-+..+.. ....+...|.
T Consensus 174 g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d--~~~r~~~H~r 231 (251)
T COG4700 174 GKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD--TAKRSRPHYR 231 (251)
T ss_pred CCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH--HHHhcchhHH
Confidence 999999999999998 678876655556667788877776655555542 2333444454
No 201
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.96 E-value=0.16 Score=45.62 Aligned_cols=176 Identities=14% Similarity=0.036 Sum_probs=85.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCC---CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhh
Q 043637 449 VLTGYARRGQSEEAMTSFSEMQWET---RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKC 525 (693)
Q Consensus 449 l~~~~~~~~~~~~a~~~~~~~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (693)
....+...|++.+|.+.|+.+.... +-.......++.++.+.|+++.|...++.+++..+.....-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 3455667888888888888886554 2334456667778888888888888888887754432222222222222211
Q ss_pred CCHHHHHHHHhcCCCCC-------HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHH
Q 043637 526 CCLEYAIRVFKESSSLD-------VIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLAL 598 (693)
Q Consensus 526 ~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 598 (693)
....... ....| ...+..++.-|-...-..+|...+..+.+. . ...-..+..-|.+.|.+..|.
T Consensus 91 ~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 91 KQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCTT-HHHHH
T ss_pred HhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHcccHHHHH
Confidence 1111110 00111 112334444444444444554444443331 0 011122345666677777777
Q ss_pred HHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHH
Q 043637 599 QFFDSMRCKYGIIPQ-LEHYECMIKLYCRYGYMKEL 633 (693)
Q Consensus 599 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 633 (693)
.-++.+.+++.-.+. ......++.+|.+.|..+.|
T Consensus 162 ~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 162 IRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 777777654322222 22344555666666666543
No 202
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.78 Score=47.72 Aligned_cols=112 Identities=17% Similarity=0.154 Sum_probs=72.2
Q ss_pred cchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHh
Q 043637 510 INVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACI 589 (693)
Q Consensus 510 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 589 (693)
....+.+.-+..+...|+..+|.++-.+..-||-..|..=+.++...+++++-+++-+.+. .+..|..+..+|.
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 3344444555556666777777777777777777777777777777777776555443322 1455666777777
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 043637 590 HEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFV 637 (693)
Q Consensus 590 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 637 (693)
+.|+.++|.+++-+.. |. ...+.+|.+.|++.+|.+.-
T Consensus 756 ~~~n~~EA~KYiprv~---~l-------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVG---GL-------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccC---Ch-------HHHHHHHHHhccHHHHHHHH
Confidence 7777777777765442 11 14567777777777776653
No 203
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.80 E-value=0.008 Score=42.81 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccC-cHHHHHHHHHHhHH
Q 043637 542 DVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEG-NVKLALQFFDSMRC 606 (693)
Q Consensus 542 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 606 (693)
+...|..+...+...|++++|+..|++..+ +.|+ ...|..+..++...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345677777777778888888888888777 4564 466667777777777 67888877777664
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.069 Score=47.61 Aligned_cols=132 Identities=10% Similarity=-0.066 Sum_probs=68.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHH-----HHHH
Q 043637 547 NSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHY-----ECMI 621 (693)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-----~~l~ 621 (693)
+.++..+.-.|.+.-...++++.++..-+-++.....|.+.-.+.||.+.|...|++..+. .-+.+.... ....
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhh
Confidence 4455555555666666666666666432234455555666666666666666666655432 222222222 2223
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCC
Q 043637 622 KLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWA 679 (693)
Q Consensus 622 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 679 (693)
..|.-++++.+|...++++. .+.++...++-.-...-.|+...|....+.+++..|..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 33455566666666666664 22333333332222223455666666666666666643
No 205
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.74 E-value=0.017 Score=54.67 Aligned_cols=130 Identities=12% Similarity=0.013 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhcccCChHHHHHHHHHHHH----hCCCc-chhHHHHHHHHHHhhCCHHHHHHHHhcCC---------CCC
Q 043637 477 KFTFETLLAACANISSLEQGKQIHCFVIR----NCYEI-NVVCRGALVEVYTKCCCLEYAIRVFKESS---------SLD 542 (693)
Q Consensus 477 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~ 542 (693)
...|..+.+.|.-.|+++.|....+.-.. .|-+. ....+..+.+++.-.|+++.|.+.|+... ...
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 35667777777778888888776654332 33222 23456667778888888888888887543 122
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHH----CC-CCCChHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 543 VIICNSMILGFCHNERGREALEVFGLMKK----EG-IKPDHITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
..+..+|...|.-..++++|+.++.+-.. .+ ..-....+++|..++...|..++|+.+.+...+
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 33556677777777778888877765332 11 112346788888888888888888887776654
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.12 Score=46.06 Aligned_cols=137 Identities=11% Similarity=0.032 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHH---
Q 043637 444 VSWNAVLTGYARRGQSEEAMTSFSEMQWET-RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALV--- 519 (693)
Q Consensus 444 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--- 519 (693)
...++++..+.-.|.+.-.+..+.+..+.. +.++.....+.+.-...|+.+.|...|+++.+..-..+....+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345566677777788888888888888776 6667777888888888999999999999877644444444433333
Q ss_pred --HHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHH
Q 043637 520 --EVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFH 582 (693)
Q Consensus 520 --~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 582 (693)
..|.-++++..|...+.++. +.++..-|.=.-++.-.|+..+|++.++.|.+ ..|...+-+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 34556677888888887776 44555556555566667888888888888888 566554444
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.74 E-value=0.024 Score=52.68 Aligned_cols=95 Identities=16% Similarity=0.068 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKPDH----ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP-QLEHYEC 619 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~ 619 (693)
.|...+....+.|++++|...|+.+.+ ..|+. ..+..+..+|...|++++|...|+.+..++...| .+..+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 344444444667899999999999988 45654 4667777899999999999999999986433332 2445556
Q ss_pred HHHHHHhcCChHHHHHHHHhCC
Q 043637 620 MIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 620 l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
++.++.+.|+.++|..++++..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 6778888999999999998775
No 208
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.69 E-value=0.0085 Score=42.01 Aligned_cols=55 Identities=16% Similarity=0.185 Sum_probs=32.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 550 ILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 550 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
...+...|++++|.+.|+++.+. .|+ ...+..+..++...|++++|...++++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555666666666666666663 353 35555555666666666666666666653
No 209
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.079 Score=48.75 Aligned_cols=93 Identities=10% Similarity=0.057 Sum_probs=42.2
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHCCCCCC-hHHHHH
Q 043637 511 NVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNE---RGREALEVFGLMKKEGIKPD-HITFHG 583 (693)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g~~p~-~~~~~~ 583 (693)
|...|-.|..+|...|+.+.|..-|.... ++++..+..+..++.... ...++..+|+++.. ..|+ ..+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHHHHHH
Confidence 34444444444444444444444444332 333444444444333221 23445555555555 3443 233334
Q ss_pred HHHHHhccCcHHHHHHHHHHhH
Q 043637 584 ILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 584 l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
|...+...|++.+|...|+.|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 4455555555555555555555
No 210
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.63 E-value=0.22 Score=46.02 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=38.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC----C-CCCHHhHHHHHHHHHhcCCccHHHHHHHHHh
Q 043637 619 CMIKLYCRYGYMKELEDFVNRMP----F-NPTVPMLRKIFDKCRKNGYATLGEWAARRLN 673 (693)
Q Consensus 619 ~l~~~~~~~g~~~~A~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 673 (693)
.+.+.|.+.|.+.-|+.-++.+. . +.....+..+..+|...|..++|..+.+.+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 34566888888887777777664 2 2223356667788888888888888776553
No 211
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.63 E-value=0.017 Score=54.78 Aligned_cols=128 Identities=13% Similarity=0.019 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHhcCC---------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH----CCCC-CCh
Q 043637 513 VCRGALVEVYTKCCCLEYAIRVFKESS---------SLDVIICNSMILGFCHNERGREALEVFGLMKK----EGIK-PDH 578 (693)
Q Consensus 513 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~-p~~ 578 (693)
..|..|.+.|.-.|+++.|+...+.-. ..-...+..+..++.-.|+++.|.+.++.-.. .|-+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456666677777889999987765422 11233677888999999999999998887543 3322 133
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHh---c-CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCK---Y-GIIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
.+..+|.+.|.-..++.+|+.++.+-... . ...-....+.+|..+|...|..++|+.+.+.-
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 56667888888888999999887764321 1 11223456778889999999999998877643
No 212
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.046 Score=52.12 Aligned_cols=155 Identities=12% Similarity=0.023 Sum_probs=75.4
Q ss_pred HHHHhhCCHHHHHHHHhcCCCCCHH-HHHHHHH--HHHhCCChHHHHHHHHHHHHCCCCCChHHHHH-------------
Q 043637 520 EVYTKCCCLEYAIRVFKESSSLDVI-ICNSMIL--GFCHNERGREALEVFGLMKKEGIKPDHITFHG------------- 583 (693)
Q Consensus 520 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~------------- 583 (693)
.++.-.++.++|.+.--.+.+.|.. .+..+++ ++--.++.+.|...|++.+. +.|+...-..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHh
Confidence 3444555666665555444433322 2222222 22344556666666666555 4454322111
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHh--cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHhHHH---HHHHHHh
Q 043637 584 ILLACIHEGNVKLALQFFDSMRCK--YGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRK---IFDKCRK 658 (693)
Q Consensus 584 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~ 658 (693)
=.+-..+.|.+..|.+.+.+.+.. ...+|+...|.....+..+.|+.++|+.-.+... .-|+..+.. -..++..
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHH
Confidence 112234566666676666666520 0222334455555556666677777666666554 222222222 2233334
Q ss_pred cCCccHHHHHHHHHhhcCC
Q 043637 659 NGYATLGEWAARRLNELNP 677 (693)
Q Consensus 659 ~g~~~~A~~~~~~~~~~~p 677 (693)
.+++++|.+-++++.+.+.
T Consensus 334 le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 5566666666666666543
No 213
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.45 E-value=0.071 Score=42.50 Aligned_cols=57 Identities=11% Similarity=0.098 Sum_probs=34.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCC-CCC--HHHHHHHHHHhcccCChHHHHHHHHHHHHh
Q 043637 450 LTGYARRGQSEEAMTSFSEMQWET-RPS--KFTFETLLAACANISSLEQGKQIHCFVIRN 506 (693)
Q Consensus 450 ~~~~~~~~~~~~a~~~~~~~~~~~-~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 506 (693)
..++-..|+.++|+.+|++....| ... ...+..+...+...|++++|..+++.....
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345556677777777777766665 221 234455556666667777777766666553
No 214
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.39 E-value=0.14 Score=50.34 Aligned_cols=65 Identities=12% Similarity=0.068 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 540 SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH----ITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 540 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
+.+...|+.+..+|.+.|++++|+..|++.++ +.|+. .+|..+..+|...|+.++|++.++++.+
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566778888888888888888888888887 67764 3477788888888888888888888775
No 215
>PRK15331 chaperone protein SicA; Provisional
Probab=96.30 E-value=0.11 Score=43.44 Aligned_cols=97 Identities=9% Similarity=-0.040 Sum_probs=65.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRY 627 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 627 (693)
...-+...|++++|..+|.-+.- ..| +..-|..|..+|-..+++++|+..+..... .+ .-|+..+-....+|...
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~-~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LL-KNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-cCCCCccchHHHHHHHh
Confidence 34445677888888888887777 445 334455556667777888888888887753 22 34444556677888888
Q ss_pred CChHHHHHHHHhCCCCCCHHhH
Q 043637 628 GYMKELEDFVNRMPFNPTVPML 649 (693)
Q Consensus 628 g~~~~A~~~~~~~~~~~~~~~~ 649 (693)
|+.+.|+..|+....+|....+
T Consensus 119 ~~~~~A~~~f~~a~~~~~~~~l 140 (165)
T PRK15331 119 RKAAKARQCFELVNERTEDESL 140 (165)
T ss_pred CCHHHHHHHHHHHHhCcchHHH
Confidence 8888888888777655544433
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.29 E-value=0.042 Score=46.38 Aligned_cols=71 Identities=20% Similarity=0.270 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChhHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRC----KYGIIPQLEHY 617 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~ 617 (693)
+...++..+...|++++|...++++.. ..| |...|..++.+|...|+...|.+.++++.. +.|+.|++.+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 445567777888999999999999888 566 567888889999999999999998887743 46888887754
No 217
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.26 E-value=1.2 Score=42.72 Aligned_cols=295 Identities=11% Similarity=0.030 Sum_probs=149.9
Q ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH--hcccchhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 043637 344 WNAMLAGYTR--SLLWKEALDFVFLMRKTTKDIDQVTLGLILNVC--AGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLD 419 (693)
Q Consensus 344 ~~~l~~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 419 (693)
|..|-.++.. .|+-..|.+.-.+-.+. +.-|......++.+- .-.|+.+.+.+-|+.|....- ....-...|.-
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPE-tRllGLRgLyl 162 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPE-TRLLGLRGLYL 162 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChH-HHHHhHHHHHH
Confidence 4445445444 56666666655443321 455666666666644 456899999999999875320 01111223333
Q ss_pred HHHHcCChHHHHHHHHhhcCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC--CCCHH--HHHHHHHHh--cc-c
Q 043637 420 MYRKCGNLRSARIWFYQMSQR-R-DKVSWNAVLTGYARRGQSEEAMTSFSEMQWET--RPSKF--TFETLLAAC--AN-I 490 (693)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~p~~~--~~~~ll~~~--~~-~ 490 (693)
.-.+.|..+.|.+.-...... | -...+...+...|..|+++.|+++++.-.... .++.. .-..|+.+- +. .
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 334668888885555555443 2 34567888889999999999999988765443 33321 222333221 11 1
Q ss_pred CChHHHHHHHHHHHHhCCCcchhHH-HHHHHHHHhhCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhCCChHHH-HHHH
Q 043637 491 SSLEQGKQIHCFVIRNCYEINVVCR-GALVEVYTKCCCLEYAIRVFKESS--SLDVIICNSMILGFCHNERGREA-LEVF 566 (693)
Q Consensus 491 ~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A-~~~~ 566 (693)
.+...|...-.+..+ +.|+..-- ..-...+.+.|+..++-.+++.+- .|.+.++... ...+.|+.... ++-.
T Consensus 243 adp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY--~~ar~gdta~dRlkRa 318 (531)
T COG3898 243 ADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLY--VRARSGDTALDRLKRA 318 (531)
T ss_pred CChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHH--HHhcCCCcHHHHHHHH
Confidence 233333333333322 22222111 112344556666666666666555 3333333222 22333332111 1122
Q ss_pred HHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhCCCCC
Q 043637 567 GLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCR-YGYMKELEDFVNRMPFNP 644 (693)
Q Consensus 567 ~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~ 644 (693)
+++.. ++||. .+...+..+....|++..|..--+... ...|....|..|.++-.. .|+-.++..++-+....|
T Consensus 319 ~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 319 KKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 22222 45543 444445555566666666555554443 345555566555555433 366666666665554444
Q ss_pred CHHhH
Q 043637 645 TVPML 649 (693)
Q Consensus 645 ~~~~~ 649 (693)
..|.|
T Consensus 394 rdPaW 398 (531)
T COG3898 394 RDPAW 398 (531)
T ss_pred CCCcc
Confidence 44444
No 218
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.25 E-value=0.026 Score=55.26 Aligned_cols=69 Identities=10% Similarity=-0.038 Sum_probs=53.0
Q ss_pred CCCCChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCc--hhhhHHHHHHhccCChhhHHHhhccCCC
Q 043637 37 DEPVSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPV--FLLNRAIECYGKCGNLDDARGLFDEMPE 105 (693)
Q Consensus 37 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 105 (693)
..|.+...++.+..+|...|++++|...|++.++.++.... .+|..+..+|...|+.++|++.+++..+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566688888888888899999999999988888754221 3477788888888888888888876654
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=96.22 E-value=0.03 Score=46.58 Aligned_cols=96 Identities=8% Similarity=-0.123 Sum_probs=73.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHh
Q 043637 581 FHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRK 658 (693)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 658 (693)
.....--+...|++++|..+|.-+.. --.-++..+..|..++-..|++++|+..+.-.. ...|+.........+..
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence 33445566789999999999998874 233456667778888889999999999987553 33444444457888899
Q ss_pred cCCccHHHHHHHHHhhcCCCC
Q 043637 659 NGYATLGEWAARRLNELNPWA 679 (693)
Q Consensus 659 ~g~~~~A~~~~~~~~~~~p~~ 679 (693)
.|+.+.|+..++.+.+ .|.+
T Consensus 118 l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 118 MRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred hCCHHHHHHHHHHHHh-Ccch
Confidence 9999999999999988 4544
No 220
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.20 E-value=1.4 Score=43.15 Aligned_cols=137 Identities=14% Similarity=0.085 Sum_probs=88.0
Q ss_pred hhcCccHHHHHHHHHHHHHhCCCCCc------hhhhHHHHHHhccCChhhHHHhhccCCCC-CcccHHHHHHHH--HhCC
Q 043637 52 CASSKAIVEARKLESNLVTFYPTPPV------FLLNRAIECYGKCGNLDDARGLFDEMPER-DGGSWNAMLGAY--TQNG 122 (693)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~--~~~~ 122 (693)
+-+++++.++..+|.++.+..- .++ ...+.++++|. ..+.+.....+....+. ....|-.+..++ -+.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~-~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKE-SSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh-cchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Confidence 3467899999999999876532 222 23457788887 45666666666555442 345577776655 4678
Q ss_pred ChhhHHHHHHHhhhC--CCCC------------CHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCC----CchhhHhHH
Q 043637 123 FPGRTLELFLDMNHS--GVSA------------NQITYANVLRSSAEELELGVSKQLHGLIVKRGFC----GNVILESSL 184 (693)
Q Consensus 123 ~~~~a~~~~~~m~~~--g~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~l 184 (693)
.+.+|++.+....+. +..| |-..=+..+..+...|++.++..+++.+...=++ -+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 889999888776554 3222 1112233455666788888888887777765443 677777776
Q ss_pred HHHhhc
Q 043637 185 VDAYGK 190 (693)
Q Consensus 185 ~~~~~~ 190 (693)
+-.+++
T Consensus 174 vlmlsr 179 (549)
T PF07079_consen 174 VLMLSR 179 (549)
T ss_pred HHHHhH
Confidence 666655
No 221
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.031 Score=53.41 Aligned_cols=127 Identities=6% Similarity=-0.089 Sum_probs=73.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHC-----CCCCC---------hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh
Q 043637 549 MILGFCHNERGREALEVFGLMKKE-----GIKPD---------HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQL 614 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~-----g~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 614 (693)
-...+.+.|++..|...|++.... +..+. ..++..+.-+|.+.+++..|++..++..+ --++|+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe--~~~~N~ 291 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE--LDPNNV 291 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh--cCCCch
Confidence 356778888888888888886652 11221 11355555666677777777777777764 344556
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHhHHHHHHHHHhcC-CccHHHHHHHHHhhcCC
Q 043637 615 EHYECMIKLYCRYGYMKELEDFVNRMP-FNP-TVPMLRKIFDKCRKNG-YATLGEWAARRLNELNP 677 (693)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 677 (693)
.....-.++|...|+++.|+..|+++. ..| +..+-..+...-.+.. ..+....+|..|+..-+
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 666666677777777777777777664 233 3333333333322222 22334566666666544
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.11 E-value=0.013 Score=42.99 Aligned_cols=61 Identities=13% Similarity=0.224 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC-CC---CC-hhHHHHHHHHHHhcCChHHHHHHHHh
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYG-II---PQ-LEHYECMIKLYCRYGYMKELEDFVNR 639 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 639 (693)
.+++.+...|...|++++|+..+++..+... .. |+ ..++..+..+|.+.|++++|++.+++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4556666666677777777776666653110 11 11 22344445555555555555555443
No 223
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.09 E-value=0.096 Score=42.22 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=41.4
Q ss_pred CCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 043637 573 GIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKL 623 (693)
Q Consensus 573 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 623 (693)
.+.|+..+..+++.+|+..|++..|+++++...+.++++.+..+|..|+.=
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 366788888888888888888888888888888888877777778777654
No 224
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.01 E-value=0.035 Score=39.98 Aligned_cols=54 Identities=20% Similarity=0.148 Sum_probs=34.8
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 551 LGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 551 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
..+.+.+++++|.++++++.. +.|+ ...+.....++.+.|++++|.+.++...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345666677777777777776 4453 35555566667777777777777777664
No 225
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.00 E-value=0.042 Score=49.42 Aligned_cols=111 Identities=16% Similarity=0.216 Sum_probs=84.0
Q ss_pred hHHHhhccCC--CCCcccHHHHHHHHHhC-----CChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccC----------
Q 043637 95 DARGLFDEMP--ERDGGSWNAMLGAYTQN-----GFPGRTLELFLDMNHSGVSANQITYANVLRSSAEEL---------- 157 (693)
Q Consensus 95 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~---------- 157 (693)
.....|...+ ++|..+|-..+..+... +.++-....++.|++.|+.-|..+|..|++.+=+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3445566555 56778888888888644 566677788899999999999999999998775432
Q ss_pred ------ChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCH-HHHHHHHhccC
Q 043637 158 ------ELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVM-TDARRMFDDIQ 205 (693)
Q Consensus 158 ------~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 205 (693)
+-+-+..++++|...|+-||..+-..|++++.+.|.. .+..++.-.|+
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2345788999999999999999999999999887753 33444444444
No 226
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.00 E-value=1.4 Score=42.94 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
.-+..++.++.-.|++++|.+..++|.
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 344444455555555555555555554
No 227
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.96 E-value=0.052 Score=49.21 Aligned_cols=84 Identities=15% Similarity=0.112 Sum_probs=36.1
Q ss_pred hCCChHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCC
Q 043637 555 HNERGREALEVFGLMKKEGIKPD----HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ-LEHYECMIKLYCRYGY 629 (693)
Q Consensus 555 ~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 629 (693)
+.|++..|...|...++. -|+ ...+.-|..++...|++++|..+|..+.++++-.|. ++.+-.|..+..+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 334455555555554442 121 122333444455555555555555544443333332 2334444444444444
Q ss_pred hHHHHHHHHhC
Q 043637 630 MKELEDFVNRM 640 (693)
Q Consensus 630 ~~~A~~~~~~~ 640 (693)
.++|..+|++.
T Consensus 231 ~d~A~atl~qv 241 (262)
T COG1729 231 TDEACATLQQV 241 (262)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.95 E-value=0.02 Score=41.99 Aligned_cols=60 Identities=12% Similarity=0.147 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-----CCCC----HHhHHHHHHHHHhcCCccHHHHHHHHHhhc
Q 043637 616 HYECMIKLYCRYGYMKELEDFVNRMP-----FNPT----VPMLRKIFDKCRKNGYATLGEWAARRLNEL 675 (693)
Q Consensus 616 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 675 (693)
++..+...|.+.|++++|+..+++.. ..++ ..++..++..+...|++++|.+.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45666666666666666666666542 1111 234555666666666666666666666553
No 229
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.87 E-value=0.77 Score=45.58 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=33.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCC--ChHHHHHHHHHHhccCcHHHHHHHHHHh
Q 043637 547 NSMILGFCHNERGREALEVFGLMKKEGIKP--DHITFHGILLACIHEGNVKLALQFFDSM 604 (693)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 604 (693)
..+..++.+.|+.++|++.+++|.+. .++ +......|+.++...+.+.++..++.+-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke-~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKE-FPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhh-CCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 34555556666666666666666542 122 1234555666666666666666666654
No 230
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.86 E-value=0.2 Score=44.98 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=23.6
Q ss_pred HHHHHHhcCChHHHHHHHHhCCC-CCCH----HhHHHHHHHHHhcCCccHH
Q 043637 620 MIKLYCRYGYMKELEDFVNRMPF-NPTV----PMLRKIFDKCRKNGYATLG 665 (693)
Q Consensus 620 l~~~~~~~g~~~~A~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A 665 (693)
+++.|.+.|.+..|..-++.+.. -|+. ..+..++.++.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 34556667777766666665531 1221 2344556666666655543
No 231
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.78 E-value=0.019 Score=33.76 Aligned_cols=33 Identities=12% Similarity=-0.098 Sum_probs=28.2
Q ss_pred HhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCC
Q 043637 647 PMLRKIFDKCRKNGYATLGEWAARRLNELNPWA 679 (693)
Q Consensus 647 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 679 (693)
..+..++..+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356778889999999999999999999999975
No 232
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.74 E-value=0.68 Score=39.75 Aligned_cols=131 Identities=7% Similarity=-0.070 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHH--HHHHhccCcHHHHHHHHHHhHHhcCCCCChh----HHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGI--LLACIHEGNVKLALQFFDSMRCKYGIIPQLE----HYE 618 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~----~~~ 618 (693)
.|..++.... .+.. +.....+++....-......+..| ...+...+++++|...++.... .+.|.. .--
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~l 130 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA---QTKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHH
Confidence 3444555443 2233 555566666664212222333333 3788899999999999998763 222221 223
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHh-HHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 619 CMIKLYCRYGYMKELEDFVNRMPFNPTVPM-LRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 619 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
.|.+.....|.+|+|+..++....+.-.+. ...-++.+...|+.++|+..|++.++.+++.+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 466778899999999999998875443443 34456788899999999999999999876443
No 233
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.58 E-value=0.088 Score=42.82 Aligned_cols=58 Identities=16% Similarity=0.020 Sum_probs=28.1
Q ss_pred HHHhcCChHHHHHHHHhCCC-----CCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 623 LYCRYGYMKELEDFVNRMPF-----NPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 623 ~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
...+.|++++|++.|+.+.. +-....--.++.+|.+.|++++|...+++.++++|.++
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 34445555555555554431 01112233355555555555555555555555555555
No 234
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.55 E-value=0.018 Score=33.81 Aligned_cols=33 Identities=15% Similarity=-0.062 Sum_probs=28.2
Q ss_pred HhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCC
Q 043637 647 PMLRKIFDKCRKNGYATLGEWAARRLNELNPWA 679 (693)
Q Consensus 647 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 679 (693)
..|..++..+...|++++|...++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 357778899999999999999999999999964
No 235
>PRK11906 transcriptional regulator; Provisional
Probab=95.50 E-value=0.55 Score=46.50 Aligned_cols=108 Identities=13% Similarity=0.111 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHH
Q 043637 559 GREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ-LEHYECMIKLYCRYGYMKELEDF 636 (693)
Q Consensus 559 ~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 636 (693)
..+|.++.++..+ +.| |......+..+..-.++++.|...|++.. .+.|| ...|........-+|+.++|.+.
T Consensus 320 ~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 320 AQKALELLDYVSD--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4455556666666 334 44555555555566666777777777665 34444 34455555556666777777777
Q ss_pred HHhC-CCCCC---HHhHHHHHHHHHhcCCccHHHHHHHHH
Q 043637 637 VNRM-PFNPT---VPMLRKIFDKCRKNGYATLGEWAARRL 672 (693)
Q Consensus 637 ~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 672 (693)
+++. .-.|. .......++.|+..+ .+.|+..|-+-
T Consensus 395 i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 395 IDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred HHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhc
Confidence 7663 22222 234444455555543 55566555543
No 236
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.20 E-value=1.3 Score=39.25 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=12.0
Q ss_pred CCccHHHHHHHHHhhcCCCC
Q 043637 660 GYATLGEWAARRLNELNPWA 679 (693)
Q Consensus 660 g~~~~A~~~~~~~~~~~p~~ 679 (693)
+|.-.+..++++..+++|..
T Consensus 209 ~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred ccHHHHHHHHHHHHhcCCcc
Confidence 45555666666666666643
No 237
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.16 E-value=3.8 Score=40.73 Aligned_cols=66 Identities=9% Similarity=-0.146 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---ChHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 541 LDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP---DHITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 541 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
....+|..++..+.+.|+++.|...+.++...+..+ .+.....-++.....|+.++|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445578888999999999999999999888743222 233444455677778888999998888875
No 238
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.15 E-value=0.18 Score=42.48 Aligned_cols=71 Identities=14% Similarity=0.037 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHH-----hCCCcchhHHH
Q 043637 446 WNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIR-----NCYEINVVCRG 516 (693)
Q Consensus 446 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 516 (693)
...++..+...|++++|.++.+.+....+-+...+..++.++...|+...|.+.|+.+.+ .|+.|+..+-.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 344556667778888888888888777777788888888888888888888888777654 57777766543
No 239
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=2.1 Score=40.10 Aligned_cols=150 Identities=13% Similarity=0.053 Sum_probs=87.0
Q ss_pred cCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHh---CCCcchhHHHHHHHHHHhhCCHHHHH
Q 043637 456 RGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRN---CYEINVVCRGALVEVYTKCCCLEYAI 532 (693)
Q Consensus 456 ~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~ 532 (693)
.|+..+|-..++++....+.|...+...-.+|...|+.+.-...++++... +++....+-..+.-++..+|-+++|+
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 455666666666666555666666666666677777766666666665542 22222233334444556677777777
Q ss_pred HHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 533 RVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD---HITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 533 ~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
+.-++.. +.|...-.+....+...|++.++.+...+-...=-..+ ...|....-.+...+.++.|+++|++=+
T Consensus 196 k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 196 KQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 7777666 34444555666666777777777776655333100001 1234444445566677788887777644
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.01 E-value=0.28 Score=44.62 Aligned_cols=105 Identities=13% Similarity=0.010 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC----C-CCCHHhHHHH
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP-QLEHYECMIKLYCRYGYMKELEDFVNRMP----F-NPTVPMLRKI 652 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~-~~~~~~~~~l 652 (693)
..|+.-+. +.+.|++..|.+.|.....++.-.+ .+..+..|...+...|++++|...|..+. . +.-+..+..+
T Consensus 143 ~~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 35666554 4567889999999999986322111 23446679999999999999999988774 2 2234467778
Q ss_pred HHHHHhcCCccHHHHHHHHHhhcCCCCCcchh
Q 043637 653 FDKCRKNGYATLGEWAARRLNELNPWAPFQFK 684 (693)
Q Consensus 653 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 684 (693)
.......|+.++|...++.+.+..|..+.+-.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 88888999999999999999999998776543
No 241
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.00 E-value=0.47 Score=44.67 Aligned_cols=127 Identities=14% Similarity=-0.023 Sum_probs=64.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCC---CCC--ChHHHHHHHHHHhccCcHHHHHHHHHHhHH---hcCCCCChhHHH-
Q 043637 548 SMILGFCHNERGREALEVFGLMKKEG---IKP--DHITFHGILLACIHEGNVKLALQFFDSMRC---KYGIIPQLEHYE- 618 (693)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~m~~~g---~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~p~~~~~~- 618 (693)
++..+....+.++++++.|+....-- -.| ....+..|...|.+..|+++|.-+..++.+ ..++.....-|.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 34455555556666666666554411 111 123456666666666666666655544432 122222222222
Q ss_pred ----HHHHHHHhcCChHHHHHHHHhCC----CCCCHH----hHHHHHHHHHhcCCccHHHHHHHHHhh
Q 043637 619 ----CMIKLYCRYGYMKELEDFVNRMP----FNPTVP----MLRKIFDKCRKNGYATLGEWAARRLNE 674 (693)
Q Consensus 619 ----~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 674 (693)
.+.-+|-..|+.-.|.+..++.. ..+|.+ ....+.+.|+..||.+.|..-|+.+..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 23344555666665655555432 233333 344566666777777777666666544
No 242
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.99 E-value=2.9 Score=38.47 Aligned_cols=160 Identities=16% Similarity=0.065 Sum_probs=95.4
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCCC--CCH-HHHHHHHH-HHHhCCChHHHHHHHHHHHHCCCCC----ChHHHHHHHH
Q 043637 515 RGALVEVYTKCCCLEYAIRVFKESSS--LDV-IICNSMIL-GFCHNERGREALEVFGLMKKEGIKP----DHITFHGILL 586 (693)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~l~~ 586 (693)
+......+...+....+...+..... ++. ........ .+...|+++.|...+++... ..| ....+.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~ 175 (291)
T COG0457 98 LLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGA 175 (291)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhh
Confidence 33334444444445555555544331 111 12222222 67777888888888887755 333 2233444444
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCCC-CCC-HHhHHHHHHHHHhcCCcc
Q 043637 587 ACIHEGNVKLALQFFDSMRCKYGIIP-QLEHYECMIKLYCRYGYMKELEDFVNRMPF-NPT-VPMLRKIFDKCRKNGYAT 663 (693)
Q Consensus 587 ~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~ 663 (693)
.+...++++.+...+..... .... ....+..+...+...|+.++|...+..... .++ ...+......+...|..+
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (291)
T COG0457 176 LLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYE 253 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHH
Confidence 46677788888888888764 3333 356677777778888888888888777652 232 334444555555666788
Q ss_pred HHHHHHHHHhhcCCC
Q 043637 664 LGEWAARRLNELNPW 678 (693)
Q Consensus 664 ~A~~~~~~~~~~~p~ 678 (693)
.+...+++..+..|.
T Consensus 254 ~~~~~~~~~~~~~~~ 268 (291)
T COG0457 254 EALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhCcc
Confidence 888888888888775
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.96 E-value=1.4 Score=45.29 Aligned_cols=159 Identities=14% Similarity=0.085 Sum_probs=79.1
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHH-hCCCcch-----hHHHHHHHHHH----hhCCHHHHHHHHhcCC--CCCHHHHHH
Q 043637 481 ETLLAACANISSLEQGKQIHCFVIR-NCYEINV-----VCRGALVEVYT----KCCCLEYAIRVFKESS--SLDVIICNS 548 (693)
Q Consensus 481 ~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~-----~~~~~l~~~~~----~~~~~~~A~~~~~~~~--~~~~~~~~~ 548 (693)
..++....-.||-+.+.+.+.+..+ .++.-.. -.|...+..+. .....+.|.++++.+. -|+...|..
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 3444445555666666666665544 2222111 11112221111 2345566666666665 355544443
Q ss_pred H-HHHHHhCCChHHHHHHHHHHHHCC--CC-CChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH-HH
Q 043637 549 M-ILGFCHNERGREALEVFGLMKKEG--IK-PDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMI-KL 623 (693)
Q Consensus 549 l-~~~~~~~g~~~~A~~~~~~m~~~g--~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~-~~ 623 (693)
. .+.+...|+.++|++.|++..... .+ .....+.-+...+....+|++|.+.|..+.+. -.-+..+|..+. -+
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~--s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE--SKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 3 344556677777777777654311 11 12344555566667777777777777777642 222233333332 23
Q ss_pred HHhcCCh-------HHHHHHHHhCC
Q 043637 624 YCRYGYM-------KELEDFVNRMP 641 (693)
Q Consensus 624 ~~~~g~~-------~~A~~~~~~~~ 641 (693)
+...|+. ++|.++|.+.+
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 4455666 55555555543
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.95 E-value=1.7 Score=35.58 Aligned_cols=115 Identities=10% Similarity=0.015 Sum_probs=68.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGIKPD---HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYC 625 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 625 (693)
-.....+.|++++|.+.|+.+... .+.. ...-..++.+|.+.|++++|...+++.++-+.-.|+.. |-....+++
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~gL~ 93 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRGLS 93 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHHHH
Confidence 344456778888888888888774 2222 34566677888888888888888888886444444433 444444444
Q ss_pred hcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 626 RYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 626 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
.-...+..+.-+- ....|+ +....|...++.+++..|+++
T Consensus 94 ~~~~~~~~~~~~~--~~drD~-------------~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 94 YYEQDEGSLQSFF--RSDRDP-------------TPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHhhhHHhhhc--ccccCc-------------HHHHHHHHHHHHHHHHCcCCh
Confidence 3332222221111 111111 123478888888888888654
No 245
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.92 E-value=0.8 Score=36.36 Aligned_cols=57 Identities=12% Similarity=0.058 Sum_probs=28.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
.+..+...|+-+.-.+++.++... -.|++.....+..+|.+.|+..++.+++.++.+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 344555555555555555555432 245555555555666666666666666666654
No 246
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.35 Score=46.54 Aligned_cols=119 Identities=16% Similarity=0.089 Sum_probs=88.9
Q ss_pred HHHHHHhhCCHHHHHHHHhcCC------------------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-Ch
Q 043637 518 LVEVYTKCCCLEYAIRVFKESS------------------SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DH 578 (693)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 578 (693)
-...|.+.|++..|...|+++. ..-..+++.+..++.+.+++..|++...+.++. .| |.
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--~~~N~ 291 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--DPNNV 291 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--CCCch
Confidence 3567888999999988887643 122347888999999999999999999999994 45 56
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCChHH-HHHHHHhCC
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQL-EHYECMIKLYCRYGYMKE-LEDFVNRMP 641 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~-A~~~~~~~~ 641 (693)
.....=..+|...|+++.|...|+++.+ +.|+. ..-..|+.+-.+....++ ..++|..|-
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k---~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALK---LEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777778999999999999999999984 45654 444555555555544443 356666663
No 247
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.76 E-value=1 Score=37.57 Aligned_cols=41 Identities=7% Similarity=-0.052 Sum_probs=18.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIH 590 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 590 (693)
++..+...+.......+++.+...| ..+....+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3334444444445555555544443 1233344444444443
No 248
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.74 E-value=1.4 Score=44.70 Aligned_cols=133 Identities=15% Similarity=0.047 Sum_probs=86.7
Q ss_pred HHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Q 043637 479 TFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNER 558 (693)
Q Consensus 479 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 558 (693)
....++.-+.+.|-.+.|.++...- ..-.+...+.|+++.|.++.++.. +...|..|.......|+
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCC
Confidence 3455555556666666665543321 123445667788888888876654 56689999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 043637 559 GREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVN 638 (693)
Q Consensus 559 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 638 (693)
++-|++.|.+..+ |..|+-.|...|+.+.-.++.+....+ |. ++....++.-.|+.++..++|.
T Consensus 363 ~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 363 IELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-GD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-cC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 9999988887554 566666777778877777777666542 21 4555566677788888888887
Q ss_pred hCC
Q 043637 639 RMP 641 (693)
Q Consensus 639 ~~~ 641 (693)
+..
T Consensus 427 ~~~ 429 (443)
T PF04053_consen 427 ETG 429 (443)
T ss_dssp HTT
T ss_pred HcC
Confidence 765
No 249
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.73 E-value=1.1 Score=40.50 Aligned_cols=168 Identities=13% Similarity=0.080 Sum_probs=112.0
Q ss_pred cchhHHHHHHHHHHhhCCHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh--HHH
Q 043637 510 INVVCRGALVEVYTKCCCLEYAIRVFKESS------SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH--ITF 581 (693)
Q Consensus 510 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~ 581 (693)
|-...|+..+ .-.+.|++++|.+.|+.+. +....+--.++.++.+.++++.|+..+++... ..|+. .-|
T Consensus 33 p~~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~--lyP~~~n~dY 109 (254)
T COG4105 33 PASELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR--LYPTHPNADY 109 (254)
T ss_pred CHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCCCCChhH
Confidence 3344444433 3456799999999999877 22344666778889999999999999999988 44532 334
Q ss_pred HHHHHHHhc-------cCcH---HHHHHHHHHhHHhcCCC---CChhH------------HHHHHHHHHhcCChHHHHHH
Q 043637 582 HGILLACIH-------EGNV---KLALQFFDSMRCKYGII---PQLEH------------YECMIKLYCRYGYMKELEDF 636 (693)
Q Consensus 582 ~~l~~~~~~-------~g~~---~~A~~~~~~~~~~~~~~---p~~~~------------~~~l~~~~~~~g~~~~A~~~ 636 (693)
...|.+++. ..|. ..|..-|+++..++.-. ||... =-.+.+.|.+.|.+.-|..-
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR 189 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINR 189 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 444443332 2233 34555555555543222 22211 11346778999999999988
Q ss_pred HHhCCC-----CCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 637 VNRMPF-----NPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 637 ~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
+++|.. .-..+.+..+..+|..-|-.++|....+-+....|+++
T Consensus 190 ~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 190 FEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 888852 22334677788999999999999998887777777665
No 250
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.72 E-value=0.0087 Score=35.11 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=21.6
Q ss_pred HHHHhhcCCCCCcchhhhhhccc
Q 043637 669 ARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 669 ~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
++++++++|+++.++..||++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~ 24 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYL 24 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHH
Confidence 78999999999999999999986
No 251
>PRK11906 transcriptional regulator; Provisional
Probab=94.68 E-value=2.1 Score=42.60 Aligned_cols=105 Identities=15% Similarity=0.077 Sum_probs=72.0
Q ss_pred HHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHH
Q 043637 528 LEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDS 603 (693)
Q Consensus 528 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 603 (693)
..+|.++-++.. +.|......+..+....++++.|...|++... +.||. .+|......+.-.|+.++|.+.+++
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344455554443 56777777788877888889999999999888 78875 6677777777888999999999988
Q ss_pred hHHhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHH
Q 043637 604 MRCKYGIIPQ---LEHYECMIKLYCRYGYMKELEDFVN 638 (693)
Q Consensus 604 ~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~ 638 (693)
..+ ..|. ..+....++.|+..+ .++|+.++-
T Consensus 398 alr---LsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 398 SLQ---LEPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred Hhc---cCchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 653 3443 333344444555544 556666553
No 252
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.67 E-value=1.7 Score=36.13 Aligned_cols=67 Identities=7% Similarity=0.123 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc-CChHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 043637 578 HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRY-GYMKELEDFVNRMPFNPTVPMLRKIFDKC 656 (693)
Q Consensus 578 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 656 (693)
.......++.|.+.+.++++.-++.++.. +...+..+... ++.+.|.+++.+. .++..|..++..+
T Consensus 69 ~yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~ 135 (140)
T smart00299 69 HYDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKAL 135 (140)
T ss_pred cCCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 34444566777777777777777765532 33344444444 6777777777663 2555666666555
Q ss_pred H
Q 043637 657 R 657 (693)
Q Consensus 657 ~ 657 (693)
.
T Consensus 136 l 136 (140)
T smart00299 136 L 136 (140)
T ss_pred H
Confidence 4
No 253
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.54 E-value=0.29 Score=44.27 Aligned_cols=99 Identities=7% Similarity=-0.030 Sum_probs=75.4
Q ss_pred HHHHhccC--CCCcccHHHHHHHHHhc-----CCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCC------------
Q 043637 198 RRMFDDIQ--NKNAVSWNVIVRRYLVA-----GNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLS------------ 258 (693)
Q Consensus 198 ~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------------ 258 (693)
.+.|.... ++|-.+|-..+..+... +..+=....++.|++-|+.-|..+|..|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34555555 46666777777666543 455666677888999999999999999998876543
Q ss_pred ----CcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChh
Q 043637 259 ----SPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLE 296 (693)
Q Consensus 259 ----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 296 (693)
+-.-+..++++|..+|+.||..+-..|++++++.+..-
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccH
Confidence 23457889999999999999999999999998887643
No 254
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.38 E-value=8.6 Score=41.13 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=39.9
Q ss_pred HHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 043637 516 GALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGL 568 (693)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 568 (693)
.-++..+....+.+.+..+.+...+.++..|..++..+.+.+.++.-.+...+
T Consensus 709 ~dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~ 761 (933)
T KOG2114|consen 709 QDLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYK 761 (933)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHH
Confidence 34666777888888888888888877888999999988888865554444433
No 255
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.22 E-value=3.4 Score=42.60 Aligned_cols=112 Identities=18% Similarity=0.083 Sum_probs=71.7
Q ss_pred CChHHHHHHHHHHHHhCCCcchhHHH-HHHHHHHhhCCHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCChHHH
Q 043637 491 SSLEQGKQIHCFVIRNCYEINVVCRG-ALVEVYTKCCCLEYAIRVFKESS-------SLDVIICNSMILGFCHNERGREA 562 (693)
Q Consensus 491 ~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A 562 (693)
.+.+.+.+++..+.+.-+ +...|. .-...+...|++++|.+.|++.. +.....+.-+...+...+++++|
T Consensus 247 ~~~~~a~~lL~~~~~~yP--~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYP--NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 455666666666665432 333332 22344556677777777777544 22333556677778888999999
Q ss_pred HHHHHHHHHCCCCCChHHHHHHH-HHHhccCcH-------HHHHHHHHHhH
Q 043637 563 LEVFGLMKKEGIKPDHITFHGIL-LACIHEGNV-------KLALQFFDSMR 605 (693)
Q Consensus 563 ~~~~~~m~~~g~~p~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~~~ 605 (693)
.+.|.++.+.. .-+..+|..+. .++...|+. ++|.+++.++.
T Consensus 325 ~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 325 AEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 99999999852 33455566555 444566777 88888888774
No 256
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.14 E-value=4.1 Score=36.50 Aligned_cols=85 Identities=15% Similarity=0.133 Sum_probs=44.7
Q ss_pred HHHHHHHHhhCCHHHHHHHHhcCC--------CCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCC-ChHHHHH
Q 043637 516 GALVEVYTKCCCLEYAIRVFKESS--------SLDV-IICNSMILGFCHNERGREALEVFGLMKKEG--IKP-DHITFHG 583 (693)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~p-~~~~~~~ 583 (693)
.....++.+..++++|-..+.+-. -++. ..|-..|-.+....++..|.+.++.-.+-+ ..| +..+...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 334444555555555544443322 1111 134445555666667777777777744422 222 3466667
Q ss_pred HHHHHhccCcHHHHHHHH
Q 043637 584 ILLACIHEGNVKLALQFF 601 (693)
Q Consensus 584 l~~~~~~~g~~~~A~~~~ 601 (693)
|+.+| ..|+.+++.+++
T Consensus 234 LL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 234 LLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHh-ccCCHHHHHHHH
Confidence 77666 456666665554
No 257
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.13 E-value=0.93 Score=35.88 Aligned_cols=89 Identities=16% Similarity=0.087 Sum_probs=61.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh--HHHHHHHHHHh
Q 043637 550 ILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLE--HYECMIKLYCR 626 (693)
Q Consensus 550 ~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~ 626 (693)
..++...|+.+.|++.|.+.+. +-| +...||.-..++.-+|+.++|++=+++..+-.|-+-... .|..-.-.|-.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3456677888888888888887 555 567888888888888888888888888876444332221 23333344666
Q ss_pred cCChHHHHHHHHhC
Q 043637 627 YGYMKELEDFVNRM 640 (693)
Q Consensus 627 ~g~~~~A~~~~~~~ 640 (693)
.|+.+.|..-|+..
T Consensus 128 ~g~dd~AR~DFe~A 141 (175)
T KOG4555|consen 128 LGNDDAARADFEAA 141 (175)
T ss_pred hCchHHHHHhHHHH
Confidence 78888888777655
No 258
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.10 E-value=0.73 Score=37.21 Aligned_cols=48 Identities=13% Similarity=0.053 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHhcccCChHHHHHHHHHHHH-hCCCcchhHHHHHHHH
Q 043637 474 RPSKFTFETLLAACANISSLEQGKQIHCFVIR-NCYEINVVCRGALVEV 521 (693)
Q Consensus 474 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~ 521 (693)
.|+..++.+++.+++..+++..|.++.+.+.+ .+++.+..+|..|++-
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 67777788888888777888888887777766 4566566666665543
No 259
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.05 E-value=2.5 Score=33.72 Aligned_cols=137 Identities=7% Similarity=0.047 Sum_probs=75.0
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhH---HHHHHHHHHHcCChH
Q 043637 352 TRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFV---SNALLDMYRKCGNLR 428 (693)
Q Consensus 352 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~ 428 (693)
.-.|..++..++..+..... +..-++.++--....-+-+-..+.+ ..-|--.|... ....+.+|.+.|...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~L---dsIGkiFDis~C~NlKrVi~C~~~~n~~s 86 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETL---DSIGKIFDISKCGNLKRVIECYAKRNKLS 86 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHH---HHHGGGS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHH---HHHhhhcCchhhcchHHHHHHHHHhcchH
Confidence 34566667777766665432 2333444443322222223233333 22232222222 234555666655533
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCC
Q 043637 429 SARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCY 508 (693)
Q Consensus 429 ~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 508 (693)
+- ...-+..+.++|+-+.-.+++..+...+.+++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 87 e~---------------vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EY---------------VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HH---------------HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HH---------------HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 32 334466778889988888999888776688889999999999999999999999999888886
Q ss_pred C
Q 043637 509 E 509 (693)
Q Consensus 509 ~ 509 (693)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 5
No 260
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.90 E-value=2.4 Score=43.01 Aligned_cols=126 Identities=12% Similarity=0.115 Sum_probs=79.5
Q ss_pred hHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCC
Q 043637 246 TFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGR 325 (693)
Q Consensus 246 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 325 (693)
-...++.-+.+.|-.+.|.++... . ..-.+...+.|+++.|.++.++.. +...|..|.+...+.|+
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCC
Confidence 345555555555555555554322 1 122345678899999998888776 55588999999999999
Q ss_pred HHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHH
Q 043637 326 IREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGK 396 (693)
Q Consensus 326 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 396 (693)
++-|.+.|.+..+ |..|+-.|...|+.++-.++.+.....|- ++....++...|+.++..
T Consensus 363 ~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 363 IELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred HHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHH
Confidence 9999999988765 66777778888888777777666655442 344444444445544433
No 261
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.78 E-value=5.2 Score=36.41 Aligned_cols=179 Identities=12% Similarity=0.050 Sum_probs=104.7
Q ss_pred HHHhcCChHHHHHHHHHhhhCC---CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCH
Q 043637 452 GYARRGQSEEAMTSFSEMQWET---RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCL 528 (693)
Q Consensus 452 ~~~~~~~~~~a~~~~~~~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 528 (693)
.-.+.|++++|.+.|+.+.... +-...+...++.++.+.++++.|....++..+..+.....-|...+.+++.
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~---- 118 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSY---- 118 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH----
Confidence 4456788889999998887654 444567777778888899999999998888885443333334444444431
Q ss_pred HHHHHHHhcCC--CCCHH-------HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHH-HHHHHHhccCcHHHHH
Q 043637 529 EYAIRVFKESS--SLDVI-------ICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFH-GILLACIHEGNVKLAL 598 (693)
Q Consensus 529 ~~A~~~~~~~~--~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~~~~A~ 598 (693)
|..+. ..|.. .+..++.-|-...=...|......+.. -..-+. .+.+-|.+.|.+..|.
T Consensus 119 ------~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d-----~LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 119 ------FFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLND-----ALAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred ------hccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH-----HHHHHHHHHHHHHHHhcChHHHH
Confidence 11111 11111 111122222111112222222222111 011122 2347889999999999
Q ss_pred HHHHHhHHhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHH
Q 043637 599 QFFDSMRCKYGIIPQL---EHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVP 647 (693)
Q Consensus 599 ~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~ 647 (693)
.-++.|.+. .+-+. +.+-.+..+|.+.|-.++|...-.-+. ..|+.+
T Consensus 188 nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 188 NRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 999999974 33333 345566788999999999988777665 345544
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=4.4 Score=37.61 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 043637 577 DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGY 629 (693)
Q Consensus 577 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 629 (693)
|...-..+...+...|+.+.|.+.+-.+..+-.---|...-..|+..+.--|.
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 33444445555666666666555544443321222233334455555555443
No 263
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.58 E-value=1.8 Score=40.96 Aligned_cols=126 Identities=12% Similarity=0.016 Sum_probs=74.9
Q ss_pred HHHHHHHhcccCChHHHHHHHHHHHHhC-----CCcchhHHHHHHHHHHhhCCHHHHHHHHhcC-------CCCCHH---
Q 043637 480 FETLLAACANISSLEQGKQIHCFVIRNC-----YEINVVCRGALVEVYTKCCCLEYAIRVFKES-------SSLDVI--- 544 (693)
Q Consensus 480 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~~--- 544 (693)
..++..++...+.++++.+.|+...+.- .-....++..|...|.+..+.++|.-+..+. .-.|..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 3345556666666777777666655511 1123445666677777777766665444332 212222
Q ss_pred ---HHHHHHHHHHhCCChHHHHHHHHHHHH----CCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 545 ---ICNSMILGFCHNERGREALEVFGLMKK----EGIKPD-HITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 545 ---~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
....|..++...|...+|.+.-++..+ .|-.|- ......+.+.|...|+.|.|..-++.+.
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 233456677788888888777776544 343332 2445566688888888888887777654
No 264
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.51 E-value=0.34 Score=38.17 Aligned_cols=90 Identities=17% Similarity=0.081 Sum_probs=69.9
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCCHH---hHHHHHHHHHhc
Q 043637 586 LACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPF---NPTVP---MLRKIFDKCRKN 659 (693)
Q Consensus 586 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~---~~~~l~~~~~~~ 659 (693)
-+....|+.+.|++.|.+... -.+-.+..|+.-..++--.|+.++|++-+++... ..... .+-.-.-.|+..
T Consensus 51 valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 477889999999999999985 4556778899999999999999999999987741 11222 233344567889
Q ss_pred CCccHHHHHHHHHhhcCC
Q 043637 660 GYATLGEWAARRLNELNP 677 (693)
Q Consensus 660 g~~~~A~~~~~~~~~~~p 677 (693)
|+-+.|+.-|+.+-++..
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 999999998888776554
No 265
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.49 E-value=2.3 Score=35.61 Aligned_cols=108 Identities=10% Similarity=0.081 Sum_probs=62.3
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHH-HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH-HHHHhcCC
Q 043637 552 GFCHNERGREALEVFGLMKKEGIKPDHITFHGIL-LACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMI-KLYCRYGY 629 (693)
Q Consensus 552 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~ 629 (693)
.-.+.++.+++..++..+.- ++|.......+- ..+...|+|.+|..+|+++.++ .|....-..|. .++...|+
T Consensus 19 ~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~---~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER---APGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHHcCC
Confidence 34566788888888888888 778765444443 6777888888888888888643 23333333333 33334444
Q ss_pred hH---HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHH
Q 043637 630 MK---ELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWA 668 (693)
Q Consensus 630 ~~---~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 668 (693)
.+ .|.++++.- ..+.-..++..+....+...|...
T Consensus 94 ~~Wr~~A~evle~~----~d~~a~~Lv~~Ll~~~~~~~a~~~ 131 (160)
T PF09613_consen 94 PSWRRYADEVLESG----ADPDARALVRALLARADLEPAHEA 131 (160)
T ss_pred hHHHHHHHHHHhcC----CChHHHHHHHHHHHhccccchhhh
Confidence 43 233333222 223333456666665555555553
No 266
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.49 E-value=11 Score=40.27 Aligned_cols=81 Identities=14% Similarity=0.107 Sum_probs=37.7
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHH
Q 043637 453 YARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAI 532 (693)
Q Consensus 453 ~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 532 (693)
+.+.|++++|...|-+-...-.|+ .++.-+........-..+++.+.+.|+. +...-..|+.+|.+.++.++-.
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGFLEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred HHhcCCHHHHHHHHHHHcccCChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence 344555555555544432222221 1222333333344444455555555554 4444455556666666555555
Q ss_pred HHHhcCC
Q 043637 533 RVFKESS 539 (693)
Q Consensus 533 ~~~~~~~ 539 (693)
++.+...
T Consensus 452 efI~~~~ 458 (933)
T KOG2114|consen 452 EFISKCD 458 (933)
T ss_pred HHHhcCC
Confidence 5555444
No 267
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.48 E-value=0.1 Score=30.48 Aligned_cols=31 Identities=16% Similarity=-0.072 Sum_probs=26.7
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhhcCCC
Q 043637 648 MLRKIFDKCRKNGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 648 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 678 (693)
.|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667788888999999999999999999884
No 268
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.31 E-value=8.5 Score=42.94 Aligned_cols=101 Identities=12% Similarity=0.118 Sum_probs=52.9
Q ss_pred hhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChH--HHHHHHHHHhccCcHHHHHHHH
Q 043637 524 KCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHI--TFHGILLACIHEGNVKLALQFF 601 (693)
Q Consensus 524 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~ 601 (693)
..+.+++|.-.|+..-+. ..-+.+|...|+|.+|+.+..++.. .-|.. +-..|..-+..+++.-+|-+++
T Consensus 951 ~~~~~~~Aal~Ye~~Gkl-----ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il 1022 (1265)
T KOG1920|consen 951 EELMSDEAALMYERCGKL-----EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKIL 1022 (1265)
T ss_pred HhccccHHHHHHHHhccH-----HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHH
Confidence 344455555444433321 1134455555555555555554433 11221 1244556666677777777766
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 602 DSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 602 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
.+...+ ....+..|++...+++|..+-....
T Consensus 1023 ~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1023 LEYLSD---------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 655432 2344566777777777777666554
No 269
>PRK12798 chemotaxis protein; Reviewed
Probab=93.25 E-value=9.1 Score=37.64 Aligned_cols=163 Identities=11% Similarity=0.106 Sum_probs=102.1
Q ss_pred hCCHHHHHHHHhcCC----CCCHHHHHHHHHHH-HhCCChHHHHHHHHHHHHCCCCCChH----HHHHHHHHHhccCcHH
Q 043637 525 CCCLEYAIRVFKESS----SLDVIICNSMILGF-CHNERGREALEVFGLMKKEGIKPDHI----TFHGILLACIHEGNVK 595 (693)
Q Consensus 525 ~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~l~~~~~~~g~~~ 595 (693)
.|+.++|.+.+..+. ++....|-.|+.+- ....+...|+++|+...= .-|-.. ....-+-...+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 477777777777666 34445566666554 344568888888888766 456433 2333344567778888
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHH-HHHHHHh---cCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHH
Q 043637 596 LALQFFDSMRCKYGIIPQLEHYEC-MIKLYCR---YGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARR 671 (693)
Q Consensus 596 ~A~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 671 (693)
++..+-..-..++...|-...|.. +...+.+ .-..+.-..++..|....-...|-.+...-...|+.+.|.-+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 877777666665666665444332 3333333 334445556666665333445777777777788888888888888
Q ss_pred HhhcCCCCCcchhhhhhcc
Q 043637 672 LNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 672 ~~~~~p~~~~~~~~l~~~y 690 (693)
++.+-+ ........+.+|
T Consensus 283 A~~L~~-~~~~~~~ra~LY 300 (421)
T PRK12798 283 ALKLAD-PDSADAARARLY 300 (421)
T ss_pred HHHhcc-CCCcchHHHHHH
Confidence 888874 345555556655
No 270
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.25 E-value=0.17 Score=47.03 Aligned_cols=51 Identities=12% Similarity=0.174 Sum_probs=24.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHH
Q 043637 551 LGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDS 603 (693)
Q Consensus 551 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 603 (693)
.-|.+.|.+++|+..+..... +.| |.+++..-..+|.+.+.+..|..=.+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~ 156 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEA 156 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHH
Confidence 344455555555555554444 344 444444444455555544444443333
No 271
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.16 E-value=6.2 Score=35.43 Aligned_cols=114 Identities=12% Similarity=0.036 Sum_probs=60.2
Q ss_pred CCChHHHHHHHHHHHHCCCCC--C---hHHHHHHHHHHhccCcHHHHHHHHHHhHH---hcCCCCCh-hHHHHHHHHHHh
Q 043637 556 NERGREALEVFGLMKKEGIKP--D---HITFHGILLACIHEGNVKLALQFFDSMRC---KYGIIPQL-EHYECMIKLYCR 626 (693)
Q Consensus 556 ~g~~~~A~~~~~~m~~~g~~p--~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~p~~-~~~~~l~~~~~~ 626 (693)
..++++|++++++...-=..- + ...+....+.+.+..++++|-..+.+-.. +..--++. ..|-..|-.|.-
T Consensus 123 nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~ 202 (308)
T KOG1585|consen 123 NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLY 202 (308)
T ss_pred cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhh
Confidence 345666776666654410001 1 12344444677777777776666554321 01111221 224455556667
Q ss_pred cCChHHHHHHHHhC---CC---CCCHHhHHHHHHHHHhcCCccHHHHHHH
Q 043637 627 YGYMKELEDFVNRM---PF---NPTVPMLRKIFDKCRKNGYATLGEWAAR 670 (693)
Q Consensus 627 ~g~~~~A~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 670 (693)
..++..|...++.. +. ..+..+...|+.+|-. ||.+++..++.
T Consensus 203 ~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~-gD~E~~~kvl~ 251 (308)
T KOG1585|consen 203 AHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE-GDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc-CCHHHHHHHHc
Confidence 77888888888873 21 2234456666666544 56666655543
No 272
>PRK09687 putative lyase; Provisional
Probab=93.03 E-value=8.3 Score=36.57 Aligned_cols=45 Identities=4% Similarity=0.005 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCC
Q 043637 413 VSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQ 458 (693)
Q Consensus 413 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 458 (693)
+....+..+...|..+-. ..+......++...-...+.++.+.|+
T Consensus 39 vR~~A~~aL~~~~~~~~~-~~l~~ll~~~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 39 KRISSIRVLQLRGGQDVF-RLAIELCSSKNPIERDIGADILSQLGM 83 (280)
T ss_pred HHHHHHHHHHhcCcchHH-HHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 333344444444432222 333334444444444444445555544
No 273
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.85 E-value=15 Score=39.07 Aligned_cols=100 Identities=10% Similarity=0.130 Sum_probs=66.5
Q ss_pred HHHHHHcCChhHHHhhhcCCCCC-----CchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHH
Q 043637 286 TEMYVKCGRLEDARGLLDQPDER-----NIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEA 360 (693)
Q Consensus 286 ~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 360 (693)
++-+.+.+.+++|+++.+..... -...+...|+.+...|++++|-...-.|...+..-|.-.+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 45567778888888887765542 2246777888888889999998888888777777777777666666665443
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhc
Q 043637 361 LDFVFLMRKTTKDIDQVTLGLILNVCAG 388 (693)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 388 (693)
..++ .....+.+...|..++..+..
T Consensus 443 a~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 APYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hccC---CCCCcccCchHHHHHHHHHHH
Confidence 3322 222223455667777766655
No 274
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.80 E-value=5.3 Score=33.70 Aligned_cols=119 Identities=12% Similarity=0.084 Sum_probs=77.1
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH-----HHHHh
Q 043637 553 FCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMI-----KLYCR 626 (693)
Q Consensus 553 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~-----~~~~~ 626 (693)
+...+..++|+.-|..+.+.|...=+ ..-........+.|+-..|...|+++-.+ .|.+.....+. ..+..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 35667788888888888886643211 11222234556778888888888888643 33333332222 33567
Q ss_pred cCChHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 043637 627 YGYMKELEDFVNRMPFNPT---VPMLRKIFDKCRKNGYATLGEWAARRLNE 674 (693)
Q Consensus 627 ~g~~~~A~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 674 (693)
.|.+++....++-+....+ ...-..|..+-.+.|++..|...|+.+..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8888888888777753332 23455677777788888888888888776
No 275
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.77 E-value=1.2 Score=41.38 Aligned_cols=78 Identities=14% Similarity=0.238 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChhHHH
Q 043637 544 IICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRC----KYGIIPQLEHYE 618 (693)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~~ 618 (693)
.++..++..+...|+++.+.+.++++.+ ..| +...|..++.+|.+.|+...|+..++.+.. +.|+.|.+.+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4566778888888888888888888888 566 678888888899999988888888887754 457788777666
Q ss_pred HHHHH
Q 043637 619 CMIKL 623 (693)
Q Consensus 619 ~l~~~ 623 (693)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55555
No 276
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.71 E-value=0.26 Score=30.98 Aligned_cols=26 Identities=12% Similarity=0.057 Sum_probs=13.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 581 FHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
+..+..+|.+.|++++|.++++++.+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445555555555555555555553
No 277
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.66 E-value=3 Score=34.93 Aligned_cols=96 Identities=16% Similarity=0.167 Sum_probs=62.7
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHH-HHHHHHHHhcCChHHHHHHHHhCC-CCCCHHhHHHHHHHHHh-cCC
Q 043637 585 LLACIHEGNVKLALQFFDSMRCKYGIIPQLEHY-ECMIKLYCRYGYMKELEDFVNRMP-FNPTVPMLRKIFDKCRK-NGY 661 (693)
Q Consensus 585 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~-~g~ 661 (693)
+..-.+.++.+++..++..+. -++|...-. ..-...+++.|++.+|+.+|+++. ..|..+....++..|.. .||
T Consensus 17 ~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 345567789999999999986 456664433 334567889999999999999986 35556666666666654 344
Q ss_pred ccHHHHHHHHHhhcCCCCCcchhh
Q 043637 662 ATLGEWAARRLNELNPWAPFQFKI 685 (693)
Q Consensus 662 ~~~A~~~~~~~~~~~p~~~~~~~~ 685 (693)
.+. ....+.+++-.| |+.+-..
T Consensus 94 ~~W-r~~A~evle~~~-d~~a~~L 115 (160)
T PF09613_consen 94 PSW-RRYADEVLESGA-DPDARAL 115 (160)
T ss_pred hHH-HHHHHHHHhcCC-ChHHHHH
Confidence 333 333444555554 4444333
No 278
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.39 E-value=13 Score=37.33 Aligned_cols=178 Identities=13% Similarity=0.083 Sum_probs=120.8
Q ss_pred CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHH
Q 043637 474 RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMI 550 (693)
Q Consensus 474 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~ 550 (693)
..+.....+++..+...-+..-.+.+..+|...|- +...+-.++++|... ..++-..+++++. -.|++.-..|+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 66777888888888888888888888888887553 566677788888777 5566666666444 34444444455
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCC---h---HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 043637 551 LGFCHNERGREALEVFGLMKKEGIKPD---H---ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLY 624 (693)
Q Consensus 551 ~~~~~~g~~~~A~~~~~~m~~~g~~p~---~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 624 (693)
.-|-+ ++.+.+...|.++... +-|. . ..|.-+... -..+.|..+.+..++..+.|...-...+..+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 55555 7778888888887775 3331 1 234444321 24567788888888877766666666677777778
Q ss_pred HhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHh
Q 043637 625 CRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRK 658 (693)
Q Consensus 625 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 658 (693)
....++++|++++..+. .+.+...-..++..++.
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 88888888888888775 34455566666666653
No 279
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.31 E-value=18 Score=38.52 Aligned_cols=67 Identities=7% Similarity=-0.025 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHhcC-----ChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcc-cCChHHHHHHHHHHHHhCCC
Q 043637 443 KVSWNAVLTGYARRG-----QSEEAMTSFSEMQWETRPSKFTFETLLAACAN-ISSLEQGKQIHCFVIRNCYE 509 (693)
Q Consensus 443 ~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~ 509 (693)
......+...|.+.. +.+.|+.++.+....+.|+...+...+..... ..+...|.++|......|..
T Consensus 288 ~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~ 360 (552)
T KOG1550|consen 288 PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI 360 (552)
T ss_pred CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh
Confidence 334445555555532 55678888888888887777766665555444 35677888888888877754
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.10 E-value=0.19 Score=29.93 Aligned_cols=27 Identities=15% Similarity=-0.036 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHhhc
Q 043637 649 LRKIFDKCRKNGYATLGEWAARRLNEL 675 (693)
Q Consensus 649 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 675 (693)
+..++..|...|++++|++.+++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556777888888888888888885544
No 281
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.09 E-value=16 Score=37.62 Aligned_cols=185 Identities=7% Similarity=-0.068 Sum_probs=98.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 043637 442 DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEV 521 (693)
Q Consensus 442 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (693)
+..+|...+.-....|+.+.+.-.|++..-....-...|--.++-....|+.+.+..++....+.-.+-.+.+--.-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 44567777777778888888887777764332111222222333333347777777776666553332222221111112
Q ss_pred HHhhCCHHHHHHHHhcCC--CCCHH-HHHHHHHHHHhCCChHHHH---HHHHHHHHCCCCCCh--HHHHHHH-HHHhccC
Q 043637 522 YTKCCCLEYAIRVFKESS--SLDVI-ICNSMILGFCHNERGREAL---EVFGLMKKEGIKPDH--ITFHGIL-LACIHEG 592 (693)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~--~~~~~-~~~~l~~~~~~~g~~~~A~---~~~~~m~~~g~~p~~--~~~~~l~-~~~~~~g 592 (693)
....|+++.|..+++.+. -|+.. .-..-+....+.|+.+.+. +++....+....+.. ..+.-.. --+.-.+
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~ 455 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRE 455 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhc
Confidence 233467888888877665 23322 2222344556667777666 333333332122211 1111111 2334457
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 043637 593 NVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYG 628 (693)
Q Consensus 593 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 628 (693)
+.+.|..++.++.+ -++++...|..+++...-.+
T Consensus 456 d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 456 DADLARIILLEAND--ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred CHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHhCC
Confidence 77888888888874 66677777777777665544
No 282
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.48 E-value=19 Score=37.16 Aligned_cols=179 Identities=9% Similarity=-0.044 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHH
Q 043637 476 SKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILG 552 (693)
Q Consensus 476 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~ 552 (693)
+..+|...+.--...|+.+.+.-.+++..-..-. -...|-..+.-....|+.+-|..++.... .++......+-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~-Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL-YDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh-hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3455666666666677777776666665542111 11222223333334466666666555443 2222222222222
Q ss_pred H-HhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHH---HHHHHhHHhcCCCCChhHHHHHH----HH
Q 043637 553 F-CHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLAL---QFFDSMRCKYGIIPQLEHYECMI----KL 623 (693)
Q Consensus 553 ~-~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~p~~~~~~~l~----~~ 623 (693)
+ -..|++..|..+++.+.+. + |+. ..-..-+....+.|..+.+. +++..... ..-+..+...+. +.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~---~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE---GKENNGILEKLYVKFARL 449 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc---cccCcchhHHHHHHHHHH
Confidence 2 2345677777777776664 3 543 22222334455566666655 33332221 112222222222 21
Q ss_pred -HHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcC
Q 043637 624 -YCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNG 660 (693)
Q Consensus 624 -~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 660 (693)
+.-.++.+.|..++.++. .+++.+.|..++..+..++
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 222566667777766664 3455666666666666554
No 283
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.30 E-value=6.8 Score=33.36 Aligned_cols=135 Identities=11% Similarity=0.051 Sum_probs=79.0
Q ss_pred HHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCC
Q 043637 128 LELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNK 207 (693)
Q Consensus 128 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 207 (693)
.+.+..+.+.+++|+...+..++..+.+.|++....+ +...++-+|.......+-.+.. ....+.++=-.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 4566667778889999999999999998887655444 4445555555444433322222 223333332233322
Q ss_pred CcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHH
Q 043637 208 NAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIK 272 (693)
Q Consensus 208 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 272 (693)
=...+..++..+...|++-+|+++.+..... +......++.+....+|...-..++....+
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2234667778888899999999888775322 122234455666555555554444444443
No 284
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.06 E-value=1.7 Score=37.38 Aligned_cols=88 Identities=13% Similarity=0.005 Sum_probs=55.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCh-----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHH
Q 043637 550 ILGFCHNERGREALEVFGLMKKEGIKPDH-----ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ-LEHYECMIKL 623 (693)
Q Consensus 550 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~ 623 (693)
..-+.+.|++++|.+-|.+.++. ++|.. ..|..-..+..+.+.++.|+.-..+.++ +.|+ ......-..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHH
Confidence 34577888888888888888884 33322 2233334566777888888887777663 2332 1222233456
Q ss_pred HHhcCChHHHHHHHHhCC
Q 043637 624 YCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 624 ~~~~g~~~~A~~~~~~~~ 641 (693)
|.+..++++|+.-++++.
T Consensus 178 yek~ek~eealeDyKki~ 195 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKIL 195 (271)
T ss_pred HHhhhhHHHHHHHHHHHH
Confidence 777788888887777775
No 285
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.05 E-value=14 Score=35.04 Aligned_cols=17 Identities=6% Similarity=-0.201 Sum_probs=10.0
Q ss_pred hCCCHHHHHHHHHHHHH
Q 043637 353 RSLLWKEALDFVFLMRK 369 (693)
Q Consensus 353 ~~~~~~~a~~~~~~m~~ 369 (693)
+.|+.+.|...+.+...
T Consensus 5 ~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhCCHHHHHHHHHHhhh
Confidence 45666666666665544
No 286
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.88 E-value=15 Score=34.82 Aligned_cols=144 Identities=8% Similarity=-0.164 Sum_probs=78.9
Q ss_pred hCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHH----HHHHhccCcHHHH
Q 043637 525 CCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGI----LLACIHEGNVKLA 597 (693)
Q Consensus 525 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l----~~~~~~~g~~~~A 597 (693)
.|++.+|-..++++. +.|...++..=.++.-.|+.+.-...++++... ..||...|..+ .-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 355555555555554 456666666666666777766666666666653 34554333322 2344566777777
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHH------hHHHHHHHHHhcCCccHHHHHHHH
Q 043637 598 LQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVP------MLRKIFDKCRKNGYATLGEWAARR 671 (693)
Q Consensus 598 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~ 671 (693)
.+.-++..+ -.+.|...-..+...+.-.|+..++.++..+-...-+.. .|=+..-.+...+.++.|.++|.+
T Consensus 195 Ek~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 195 EKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 777666653 223344445556666666777777777766554211110 111223334455677777776654
No 287
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.82 E-value=1.1 Score=37.42 Aligned_cols=85 Identities=18% Similarity=0.194 Sum_probs=55.9
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHH
Q 043637 250 ALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREA 329 (693)
Q Consensus 250 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 329 (693)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .....++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4566667777777778888887766667788888889999998888888888884433 2223445555555555555
Q ss_pred HHHHhhCC
Q 043637 330 RELFNEMP 337 (693)
Q Consensus 330 ~~~~~~~~ 337 (693)
.-++..+.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 55555443
No 288
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.75 E-value=14 Score=34.44 Aligned_cols=58 Identities=10% Similarity=-0.062 Sum_probs=34.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCCHHhHHHHHHHHHhcCCccHHHHHHH
Q 043637 613 QLEHYECMIKLYCRYGYMKELEDFVNRMP----FNPTVPMLRKIFDKCRKNGYATLGEWAAR 670 (693)
Q Consensus 613 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 670 (693)
|...-..+...|...|+.++|.+.+-.+. ...+...-..++..+..-|..+.+...++
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 55555667777777777777776665443 22344455566666666664444444443
No 289
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.65 E-value=9.8 Score=32.42 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHH
Q 043637 344 WNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHR 404 (693)
Q Consensus 344 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 404 (693)
+..++..+...|++-+|+++.+.... .+......++.+..+.++...-..+++...+
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444555556666666665554321 1112223445555555555544444444443
No 290
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.64 E-value=11 Score=32.80 Aligned_cols=89 Identities=8% Similarity=-0.014 Sum_probs=61.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHH-----HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGIKPDHITFH-----GILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKL 623 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 623 (693)
+...+...|++++|+.-++..... |....+. .|.+.....|.+|+|+.+++...++ +. .......-.++
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w--~~~~~elrGDi 168 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SW--AAIVAELRGDI 168 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cH--HHHHHHHhhhH
Confidence 456677888899998888877762 3222333 3446778889999999998877542 22 22233445678
Q ss_pred HHhcCChHHHHHHHHhCCCC
Q 043637 624 YCRYGYMKELEDFVNRMPFN 643 (693)
Q Consensus 624 ~~~~g~~~~A~~~~~~~~~~ 643 (693)
+...|+.++|+.-+++....
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 169 LLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHcCchHHHHHHHHHHHHc
Confidence 88999999999988877633
No 291
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.43 E-value=3.9 Score=35.57 Aligned_cols=96 Identities=11% Similarity=0.070 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHH--H
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKPDH--ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ-LEHYE--C 619 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~--~ 619 (693)
.+..+..-|++.|+.+.|++.+.++.+....|.. ..+..+++.+...+++..+...+.++..- ...+. ...-+ .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~-~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL-IEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhccchHHHHHHHH
Confidence 5667788888999999999999998886555543 45677788888889999998888888652 22222 11111 1
Q ss_pred HH--HHHHhcCChHHHHHHHHhCC
Q 043637 620 MI--KLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 620 l~--~~~~~~g~~~~A~~~~~~~~ 641 (693)
.. -.+...|++.+|-+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 11 22446789999888887765
No 292
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.33 E-value=36 Score=38.41 Aligned_cols=76 Identities=17% Similarity=0.245 Sum_probs=38.5
Q ss_pred HHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHHHHHH
Q 043637 287 EMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFL 366 (693)
Q Consensus 287 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 366 (693)
+.--+.|-+++|+.++.--.+.-...|....+-+.....+++|.-.|+..-+ ...-+.+|...|+|.+|+.+-.+
T Consensus 916 n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~q 990 (1265)
T KOG1920|consen 916 NYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQ 990 (1265)
T ss_pred HHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHh
Confidence 3334445555555555444433334455555555556666666555544322 12234455556666666666554
Q ss_pred H
Q 043637 367 M 367 (693)
Q Consensus 367 m 367 (693)
+
T Consensus 991 l 991 (1265)
T KOG1920|consen 991 L 991 (1265)
T ss_pred h
Confidence 4
No 293
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.32 E-value=14 Score=35.21 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc--cc----chhhHHHHHHHHHHhCC---CCchhHHHHHHHHHHHcCCh
Q 043637 357 WKEALDFVFLMRKTTKDIDQVTLGLILNVCAG--LS----EIKMGKEVHGFIHRNDY---SSNIFVSNALLDMYRKCGNL 427 (693)
Q Consensus 357 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 427 (693)
+++.+.+++.|.+.|.+-+..+|-+....... .. ....+..+++.|.+... .++-..+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566788888888888877776654333322 11 24456667777765431 1122222222211 11111
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC--CCCH-HHHHHHHHHhcccCC--hHHHHHHHHH
Q 043637 428 RSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWET--RPSK-FTFETLLAACANISS--LEQGKQIHCF 502 (693)
Q Consensus 428 ~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~p~~-~~~~~ll~~~~~~~~--~~~a~~~~~~ 502 (693)
+.- .+.+..+|+.+...| +-+. .....++..+..... ...+..+++.
T Consensus 156 e~l----------------------------~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~ 207 (297)
T PF13170_consen 156 EEL----------------------------AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA 207 (297)
T ss_pred HHH----------------------------HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 111 255667777777766 3333 444444444433333 3467788888
Q ss_pred HHHhCCCcchhHHHHHH
Q 043637 503 VIRNCYEINVVCRGALV 519 (693)
Q Consensus 503 ~~~~~~~~~~~~~~~l~ 519 (693)
+.+.|+++....|..+.
T Consensus 208 l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 208 LKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHcCCccccccccHHH
Confidence 88888887777766544
No 294
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=90.14 E-value=15 Score=33.57 Aligned_cols=94 Identities=13% Similarity=-0.030 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHhhcC----CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHH-H
Q 043637 412 FVSNALLDMYRKCGNLRSARIWFYQMSQ----RRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLA-A 486 (693)
Q Consensus 412 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~-~ 486 (693)
.........+...+.+..+...+..... ......+......+...+++.++.+.+.........+......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 4445555556666666666555555542 2233344555555556666666666666665544111111112222 4
Q ss_pred hcccCChHHHHHHHHHHHH
Q 043637 487 CANISSLEQGKQIHCFVIR 505 (693)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~ 505 (693)
+...|+++.+...+.+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 140 LYELGDYEEALELYEKALE 158 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 5556666666666666533
No 295
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.13 E-value=0.32 Score=31.94 Aligned_cols=35 Identities=14% Similarity=-0.056 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhh
Q 043637 651 KIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKI 685 (693)
Q Consensus 651 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 685 (693)
.+.-++.+.|++++|.+..+.+++.+|+|..+-.+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 35667788999999999999999999988876544
No 296
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.91 E-value=0.8 Score=26.61 Aligned_cols=27 Identities=15% Similarity=0.059 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKK 571 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 571 (693)
+|..+..++...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555556666666666666666555
No 297
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.73 E-value=59 Score=39.96 Aligned_cols=110 Identities=10% Similarity=-0.056 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC--------HHh
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPT--------VPM 648 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~--------~~~ 648 (693)
.+|....+.+...|.++.|...+-++.+ .- -+..+-..++.+...|+-..|+.++++.. ..|+ +..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e--~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKE--SR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhh--cc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 5677777777777777777777766654 22 23345556677777777777777776542 0111 111
Q ss_pred HHHH--------HHHH-HhcCC--ccHHHHHHHHHhhcCCCCCcchhhhhhcccC
Q 043637 649 LRKI--------FDKC-RKNGY--ATLGEWAARRLNELNPWAPFQFKITTNRFDR 692 (693)
Q Consensus 649 ~~~l--------~~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 692 (693)
-+.. +.-| .+.|+ .+.-...|+.+.+..|+....++.||..|.+
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~k 1801 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDK 1801 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHH
Confidence 1111 1111 22333 3455677888888999888888888877764
No 298
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.39 E-value=0.5 Score=27.18 Aligned_cols=29 Identities=17% Similarity=-0.063 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCccHHHHHHHHHhhcCCCC
Q 043637 651 KIFDKCRKNGYATLGEWAARRLNELNPWA 679 (693)
Q Consensus 651 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 679 (693)
.++.++.+.|+.++|...++++++..|++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 46677788889999999999999988853
No 299
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.11 E-value=0.98 Score=26.80 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=9.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHH
Q 043637 547 NSMILGFCHNERGREALEVFGL 568 (693)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~ 568 (693)
+.|...|.+.|++++|++++++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444
No 300
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.06 E-value=5.1 Score=34.87 Aligned_cols=94 Identities=13% Similarity=-0.004 Sum_probs=49.8
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCH--hhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCc-h------hh
Q 043637 110 SWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQ--ITYANVLRSSAEELELGVSKQLHGLIVKRGFCGN-V------IL 180 (693)
Q Consensus 110 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~------~~ 180 (693)
.+..+..-|.+.|+.+.|++.|.++++....+.. ..+..+++.....+++..+.....+....--.+. . .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3555666666666666666666666655433332 3455666666666666666666555543322211 1 12
Q ss_pred HhHHHHHhhcCCCHHHHHHHHhccC
Q 043637 181 ESSLVDAYGKCMVMTDARRMFDDIQ 205 (693)
Q Consensus 181 ~~~l~~~~~~~g~~~~A~~~~~~~~ 205 (693)
|..|. +...+++..|.+.|-...
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHccC
Confidence 22222 223467777766665554
No 301
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.03 E-value=22 Score=34.04 Aligned_cols=134 Identities=16% Similarity=0.218 Sum_probs=77.8
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHH--cCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHh
Q 043637 392 IKMGKEVHGFIHRNDYSSNIFVSNALLDMYRK--CGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEM 469 (693)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 469 (693)
++....+++.+.+.|+..+..++-+..-.... ..+++. ...++.++++.|
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~----------------------------~~~ra~~iy~~m 129 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDE----------------------------IIQRAKEIYKEM 129 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHH----------------------------HHHHHHHHHHHH
Confidence 34556678888899888887666553322222 111111 136788999999
Q ss_pred hhCC----CCCHHHHHHHHHHhcccCC----hHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCC
Q 043637 470 QWET----RPSKFTFETLLAACANISS----LEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSL 541 (693)
Q Consensus 470 ~~~~----~p~~~~~~~ll~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 541 (693)
++.. .++..++..++.. ..++ .+.++.+++.+.+.|+..+-..
T Consensus 130 Kk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~L--------------------------- 180 (297)
T PF13170_consen 130 KKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDL--------------------------- 180 (297)
T ss_pred HHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHH---------------------------
Confidence 7765 6666777777544 2233 2445666666666665533221
Q ss_pred CHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 043637 542 DVIICNSMILGFCHNE---RGREALEVFGLMKKEGIKPDHITFHGIL 585 (693)
Q Consensus 542 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 585 (693)
... +-+-++.... ...++.++++.+.+.|+++....|..+.
T Consensus 181 --Q~L-S~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 181 --QFL-SHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred --HHH-HHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 111 1111111111 1457888999999999988777666665
No 302
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.98 E-value=3.3 Score=38.58 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCChHHHHH
Q 043637 512 VVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKK-----EGIKPDHITFHG 583 (693)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 583 (693)
..++..++..+...|+.+.+...+++.. +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3455667788888888888888888766 66778999999999999999999999988765 688888777766
Q ss_pred HHHH
Q 043637 584 ILLA 587 (693)
Q Consensus 584 l~~~ 587 (693)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6655
No 303
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.50 E-value=0.47 Score=27.74 Aligned_cols=19 Identities=11% Similarity=0.277 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhccCcHHHH
Q 043637 579 ITFHGILLACIHEGNVKLA 597 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A 597 (693)
..|..+...|...|++++|
T Consensus 14 ~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 14 EAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHCcCHHhh
Confidence 4444444444444444444
No 304
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=88.39 E-value=38 Score=36.03 Aligned_cols=26 Identities=12% Similarity=0.310 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC
Q 043637 313 WTSIVSGYAISGRIREARELFNEMPE 338 (693)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~~~~ 338 (693)
|..+.++|....+.+.+.++++++.+
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 33445556666666666666666655
No 305
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.31 E-value=4.2 Score=30.75 Aligned_cols=60 Identities=18% Similarity=0.313 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 043637 561 EALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIK 622 (693)
Q Consensus 561 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 622 (693)
+..+-+..+....+-|++......+++|.+.+++..|.++|+-++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4455666677777889999999999999999999999999998886544 33436766654
No 306
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.25 E-value=3.5 Score=30.79 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 043637 561 EALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMI 621 (693)
Q Consensus 561 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 621 (693)
++.+-++.+....+-|++....+.+++|.+.+++..|.++|+-++.+ +..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHH
Confidence 45566667777778888888888889999999999999999888753 333445565554
No 307
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=87.97 E-value=33 Score=34.79 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhcCCC--C---CHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 043637 514 CRGALVEVYTKCCCLEYAIRVFKESSS--L---DVIICNSMILGFCHNERGREALEVFGLMKK 571 (693)
Q Consensus 514 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 571 (693)
+-..+..+..+.|+.++|.+.+.++.+ | ...+...|+.++...+.+.++..++.+-.+
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 334445555555666666555555541 1 122444556666666666666666655443
No 308
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.96 E-value=14 Score=30.54 Aligned_cols=51 Identities=12% Similarity=0.174 Sum_probs=37.0
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCChHHHHHH-HHHHhccCcHHHHHHHHHHhHH
Q 043637 554 CHNERGREALEVFGLMKKEGIKPDHITFHGI-LLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 554 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
...++.+++..+++.|.- +.|+..-...+ ...+...|+|++|..+|+++.+
T Consensus 21 L~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 347788888888888887 67765433333 3567778888888888888875
No 309
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.83 E-value=1.3 Score=25.53 Aligned_cols=26 Identities=15% Similarity=0.071 Sum_probs=14.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 043637 546 CNSMILGFCHNERGREALEVFGLMKK 571 (693)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 571 (693)
|..+...+...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455555555566666666555555
No 310
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.38 E-value=49 Score=36.18 Aligned_cols=48 Identities=8% Similarity=-0.085 Sum_probs=27.8
Q ss_pred hhCCHHHHHHHHhcCC--------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 043637 524 KCCCLEYAIRVFKESS--------SLDVIICNSMILGFCHNERGREALEVFGLMKK 571 (693)
Q Consensus 524 ~~~~~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 571 (693)
..|++++|.++.+... ......+..+..+..-.|++++|..+..+..+
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 3456666655554432 23445566666666667777777666655544
No 311
>PRK09687 putative lyase; Provisional
Probab=87.30 E-value=27 Score=33.15 Aligned_cols=117 Identities=11% Similarity=-0.050 Sum_probs=47.2
Q ss_pred chhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCc----hHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 043637 177 NVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNG----KEAVVMFFKMLREDIRPLNFTFANALF 252 (693)
Q Consensus 177 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~ 252 (693)
|..+....+.++...|..+-...+..-...+|...-...+.++.+.|+. .++...+..+... .|+...-...+.
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~ 113 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAIN 113 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHH
Confidence 3344444444444444332222222222234444444455555555543 3455555555332 233333333344
Q ss_pred HhcCCCCcc--hhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCCh
Q 043637 253 ACSFLSSPY--EGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRL 295 (693)
Q Consensus 253 ~~~~~~~~~--~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 295 (693)
++...+... ...+....+...-..++..+-...+.++++.|+.
T Consensus 114 aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~ 158 (280)
T PRK09687 114 ATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE 158 (280)
T ss_pred HHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH
Confidence 433332111 0112222222222233445555555566555553
No 312
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=87.25 E-value=33 Score=34.08 Aligned_cols=142 Identities=11% Similarity=0.042 Sum_probs=87.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhhhCC--CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHH
Q 043637 443 KVSWNAVLTGYARRGQSEEAMTSFSEMQWET--RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVE 520 (693)
Q Consensus 443 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 520 (693)
...|..++..-.+..-.+.|..+|-+..+.+ .++...+++++..++ .|+...|..+|+.-...-.+ +.......+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d-~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPD-STLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 4456667777667677777777887777777 666667777776554 46667777777654443222 1222234455
Q ss_pred HHHhhCCHHHHHHHHhcCC---CCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 043637 521 VYTKCCCLEYAIRVFKESS---SLD--VIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLAC 588 (693)
Q Consensus 521 ~~~~~~~~~~A~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 588 (693)
.+...++-+.|..+|+... ..+ ...|..+|.--..-|+...+..+=++|.+ +-|...+......-|
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 5566677777777777544 122 34677777777777777777777777776 556554444444444
No 313
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.85 E-value=34 Score=33.90 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
.+|..++..+.+.|.++.|...+.++.
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~ 173 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLF 173 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHh
Confidence 344444444444455444444444443
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.70 E-value=49 Score=35.51 Aligned_cols=170 Identities=11% Similarity=0.081 Sum_probs=84.9
Q ss_pred HHHHHhCCChhhHHHHHHHhhhCCCCC---CHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcC
Q 043637 115 LGAYTQNGFPGRTLELFLDMNHSGVSA---NQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKC 191 (693)
Q Consensus 115 i~~~~~~~~~~~a~~~~~~m~~~g~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 191 (693)
|..+.+.+.+++|+++-+..... .| -.......+..+...|+++.|....-.|.. .+..-|.--+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 56667777888887776655432 33 123455566666677777777766666542 2344444444445555
Q ss_pred CCHHHHHHHHhccCC-CCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHH
Q 043637 192 MVMTDARRMFDDIQN-KNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVI 270 (693)
Q Consensus 192 g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 270 (693)
++......++-.-+. -+...|..++..+.. .+.. -|.+..+. ..++...-..++++- .. +.
T Consensus 437 ~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~----~F~e~i~~-Wp~~Lys~l~iisa~--~~----------q~ 498 (846)
T KOG2066|consen 437 DQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVK----GFLELIKE-WPGHLYSVLTIISAT--EP----------QI 498 (846)
T ss_pred cccchhhccCCCCCcccCchHHHHHHHHHHH-HHHH----HHHHHHHh-CChhhhhhhHHHhhc--ch----------HH
Confidence 444433332221111 234447766666655 2222 22222211 122222222222111 00 00
Q ss_pred HHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCc
Q 043637 271 IKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNI 310 (693)
Q Consensus 271 ~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 310 (693)
.+. .-+......|+..|...+++..|..++-...++++
T Consensus 499 ~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 499 KQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred Hhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 000 11122233488889999999999999888777644
No 315
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.47 E-value=19 Score=30.56 Aligned_cols=54 Identities=7% Similarity=0.079 Sum_probs=31.3
Q ss_pred HHhcCChHHHHHHHHHhhhCCC--CCHHHHHHHHHHhcccCChHHHHHHHHHHHHh
Q 043637 453 YARRGQSEEAMTSFSEMQWETR--PSKFTFETLLAACANISSLEQGKQIHCFVIRN 506 (693)
Q Consensus 453 ~~~~~~~~~a~~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 506 (693)
+.+.+..++|+.-|..+.+.|. -.......+.......|+...|...|+++-..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 3556777888888888777661 11222222333445566666666666666553
No 316
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.05 E-value=30 Score=36.69 Aligned_cols=101 Identities=16% Similarity=0.174 Sum_probs=63.5
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc-HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChH
Q 043637 553 FCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGN-VKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMK 631 (693)
Q Consensus 553 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 631 (693)
|...+..+.|.+.|++..+ +.|+..+-..+.-.+...|. ++...++- .+ | -.|-..+.|.|..+
T Consensus 297 ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~Fens~Elq-~I----g--------mkLn~LlgrKG~le 361 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEHFENSLELQ-QI----G--------MKLNSLLGRKGALE 361 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhhccchHHHH-HH----H--------HHHHHHhhccchHH
Confidence 4445567788899998888 78876442222222222232 22222221 11 1 22445568899988
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCC
Q 043637 632 ELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 632 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 678 (693)
+-..+|+-.- .+++-..++|+.+|.++.+.+.+++|.
T Consensus 362 klq~YWdV~~----------y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 362 KLQEYWDVAT----------YFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred HHHHHHhHHH----------hhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 8888875442 455666778999999999999999994
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.95 E-value=1.3 Score=27.09 Aligned_cols=27 Identities=15% Similarity=0.028 Sum_probs=13.7
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhh
Q 043637 648 MLRKIFDKCRKNGYATLGEWAARRLNE 674 (693)
Q Consensus 648 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 674 (693)
+++.+...|...|++++|...++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344455555555555555555555544
No 318
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.89 E-value=0.77 Score=38.42 Aligned_cols=86 Identities=12% Similarity=0.067 Sum_probs=63.3
Q ss_pred HHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCChhh
Q 043637 47 HLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGR 126 (693)
Q Consensus 47 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 126 (693)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .....+++.|.+.|.++.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35677777888888888999988877667788889999999999888899888873332 334566677777777777
Q ss_pred HHHHHHHhh
Q 043637 127 TLELFLDMN 135 (693)
Q Consensus 127 a~~~~~~m~ 135 (693)
+.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777776654
No 319
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.78 E-value=19 Score=29.82 Aligned_cols=48 Identities=6% Similarity=-0.191 Sum_probs=22.7
Q ss_pred hCCHHHHHHHHhcCC--CCCHHHH-HHHHHHHHhCCChHHHHHHHHHHHHC
Q 043637 525 CCCLEYAIRVFKESS--SLDVIIC-NSMILGFCHNERGREALEVFGLMKKE 572 (693)
Q Consensus 525 ~~~~~~A~~~~~~~~--~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~ 572 (693)
.++++++..+++.+. .|+..-. ..-..-+...|++++|.++|++..+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 455555555555443 3322211 11122344556666666666665553
No 320
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.75 E-value=4.7 Score=30.53 Aligned_cols=58 Identities=5% Similarity=0.035 Sum_probs=30.6
Q ss_pred hHHHhhhccCCCCCChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHH
Q 043637 27 TKTISGHLKSDEPVSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIE 85 (693)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (693)
.+.+..+...+..|++....+.|++|.|-+++..|.++++.++..- .+....|..+++
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 3444455556666667777777777777777777777766665431 122225555544
No 321
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.74 E-value=1.2 Score=24.82 Aligned_cols=31 Identities=19% Similarity=-0.001 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhhcCCC
Q 043637 648 MLRKIFDKCRKNGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 648 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 678 (693)
.+..+...+...|+++.|...++..++++|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3455667777788888888888888887774
No 322
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.24 E-value=6.3 Score=39.03 Aligned_cols=128 Identities=13% Similarity=0.015 Sum_probs=81.1
Q ss_pred HHHHhCCChHHHH-HHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 043637 551 LGFCHNERGREAL-EVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGY 629 (693)
Q Consensus 551 ~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 629 (693)
.-....|+...|- +++.-+....-.|+..... .......|+++.+.+.+..... -+-....+...+++...+.|+
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhh
Confidence 3344556766664 3444444433344443332 3455667889999888887753 444556667788888888999
Q ss_pred hHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcc
Q 043637 630 MKELEDFVNRMPF--NPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQ 682 (693)
Q Consensus 630 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 682 (693)
+++|...-+-|.. -.++.....-.......|-++++.-.+++++.++|+..+.
T Consensus 373 ~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g 427 (831)
T PRK15180 373 WREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG 427 (831)
T ss_pred HHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc
Confidence 9999888777751 1223333333344455677888888999999888754433
No 323
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=85.12 E-value=57 Score=34.81 Aligned_cols=26 Identities=8% Similarity=0.027 Sum_probs=15.3
Q ss_pred HhHHHHHhhcCCCHHHHHHHHhccCC
Q 043637 181 ESSLVDAYGKCMVMTDARRMFDDIQN 206 (693)
Q Consensus 181 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 206 (693)
|..+.++|.-..+.+.+.++++++.+
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 34455555666666666666666554
No 324
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.98 E-value=15 Score=34.46 Aligned_cols=102 Identities=9% Similarity=0.100 Sum_probs=72.7
Q ss_pred hCCCCCchhhhHHHHHHhccCChhhHHHhhccCCC-CCc-----ccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHh
Q 043637 71 FYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPE-RDG-----GSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQI 144 (693)
Q Consensus 71 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 144 (693)
.|.+.++.+...++..-....+++++...+-++.. |+. .+-.+.++.+ -.-++++++.++..=+..|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 34455555566666666667888888888877653 211 1222333333 3446778888888888899999999
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHHhC
Q 043637 145 TYANVLRSSAEELELGVSKQLHGLIVKRG 173 (693)
Q Consensus 145 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 173 (693)
+++.+|..+.+.+++..|.++.-.|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999988888888777654
No 325
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.87 E-value=48 Score=33.68 Aligned_cols=175 Identities=12% Similarity=0.055 Sum_probs=119.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 043637 442 DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEV 521 (693)
Q Consensus 442 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (693)
|....-+++..+..+....-+..+..+|..-| .+...|..++.+|... ..+.-..+|+++.+..++ +...-..|+..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHH
Confidence 55566778888888888888888888876654 4566788889998887 567778899999997776 55556667777
Q ss_pred HHhhCCHHHHHHHHhcCC------CCCH---HHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCChHHHHHHHHHHhcc
Q 043637 522 YTKCCCLEYAIRVFKESS------SLDV---IICNSMILGFCHNERGREALEVFGLMKKE-GIKPDHITFHGILLACIHE 591 (693)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~------~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~ 591 (693)
|.+ ++.+.+..+|.++. +.+. ..|..+..- -..+.+..+.+..++... |..--...+..+-.-|...
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 766 88888888887654 1111 145544432 134566666666666553 2222345556666788888
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 043637 592 GNVKLALQFFDSMRCKYGIIPQLEHYECMIKLY 624 (693)
Q Consensus 592 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 624 (693)
.++++|++++..+.+ ....|...-..++.-+
T Consensus 219 eN~~eai~Ilk~il~--~d~k~~~ar~~~i~~l 249 (711)
T COG1747 219 ENWTEAIRILKHILE--HDEKDVWARKEIIENL 249 (711)
T ss_pred cCHHHHHHHHHHHhh--hcchhhhHHHHHHHHH
Confidence 999999999998885 4455665555555544
No 326
>PRK11619 lytic murein transglycosylase; Provisional
Probab=84.21 E-value=67 Score=34.85 Aligned_cols=114 Identities=11% Similarity=0.058 Sum_probs=54.4
Q ss_pred CChHHHHHHHHHHHHCC-CCCCh--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 043637 557 ERGREALEVFGLMKKEG-IKPDH--ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKEL 633 (693)
Q Consensus 557 g~~~~A~~~~~~m~~~g-~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 633 (693)
.+.+.|..++....... +.+.. ..+..+.......+..++|...++.... ...+......-++.-.+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHHH
Confidence 34566666666653322 22221 2233333333333223455555544321 122444445555555567777777
Q ss_pred HHHHHhCCC--CCCHHhHHHHHHHHHhcCCccHHHHHHHHHh
Q 043637 634 EDFVNRMPF--NPTVPMLRKIFDKCRKNGYATLGEWAARRLN 673 (693)
Q Consensus 634 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 673 (693)
...+..|.. .......--++.+....|+.++|...|+.+.
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777766641 1111111124445455677777777776653
No 327
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.76 E-value=10 Score=33.24 Aligned_cols=75 Identities=9% Similarity=-0.023 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhc--CCCCChhHHHHHHHHHHhcCChHHHH
Q 043637 559 GREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKY--GIIPQLEHYECMIKLYCRYGYMKELE 634 (693)
Q Consensus 559 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~ 634 (693)
-+.|.+.|-++...+.--++.....|. .|....+.+++++++-++.+-. +-.+|+..+..|+..|.+.|+++.|-
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 377888888887766444544444444 4445678888888888887521 33567888888888888888888874
No 328
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=83.62 E-value=39 Score=31.68 Aligned_cols=159 Identities=13% Similarity=0.045 Sum_probs=78.3
Q ss_pred cCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHH----HHHHCCCCCCHHhHHHHHHHhcCCCCcc-hhH
Q 043637 190 KCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFF----KMLREDIRPLNFTFANALFACSFLSSPY-EGM 264 (693)
Q Consensus 190 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~----~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~ 264 (693)
+.+++++|++++..- ...+.+.|+...|.++-. -+.+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 345566666654332 233445555544444333 3334556666655555554444332221 222
Q ss_pred HHHHHHHHh---c--CCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 043637 265 QIHGVIIKI---D--FEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPER 339 (693)
Q Consensus 265 ~~~~~~~~~---g--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 339 (693)
.+.+.+.+. | ...+......+...|.+.|++.+|+..|--...++...+..++..+...|...++
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------
Confidence 333333332 2 2346778888889999999999998887666555554444455444444443333
Q ss_pred CcccHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 043637 340 NVISWNAMLAGYTRSLLWKEALDFVFLMRKT 370 (693)
Q Consensus 340 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 370 (693)
+...-. .+-.|...++...|...++...+.
T Consensus 141 dlfi~R-aVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 DLFIAR-AVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHH-HHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred hHHHHH-HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 111112 233456677788888777766554
No 329
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.76 E-value=2.6 Score=22.71 Aligned_cols=21 Identities=14% Similarity=0.146 Sum_probs=12.0
Q ss_pred HHHHHHHHhcCChHHHHHHHH
Q 043637 618 ECMIKLYCRYGYMKELEDFVN 638 (693)
Q Consensus 618 ~~l~~~~~~~g~~~~A~~~~~ 638 (693)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555666666666665554
No 330
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.48 E-value=18 Score=27.37 Aligned_cols=86 Identities=9% Similarity=0.059 Sum_probs=58.3
Q ss_pred ChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHH
Q 043637 158 ELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLR 237 (693)
Q Consensus 158 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 237 (693)
..++|.-+-+.+...+-. ...+--.-+..+...|++++|..+.+....||...|-.|-. .+.|-...+..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 456666666666655422 33333344566788999999999999998899998887765 456777777777777777
Q ss_pred CCCCCCHHhH
Q 043637 238 EDIRPLNFTF 247 (693)
Q Consensus 238 ~g~~p~~~~~ 247 (693)
.| .|...+|
T Consensus 97 sg-~p~lq~F 105 (115)
T TIGR02508 97 SG-DPRLQTF 105 (115)
T ss_pred CC-CHHHHHH
Confidence 65 3444444
No 331
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.29 E-value=2.2 Score=24.61 Aligned_cols=27 Identities=19% Similarity=0.009 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKK 571 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 571 (693)
+|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555566666666666666666555
No 332
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.29 E-value=6.7 Score=29.39 Aligned_cols=42 Identities=7% Similarity=0.100 Sum_probs=21.8
Q ss_pred HHHhhhccCCCCCChhHHHHHHHHhhcCccHHHHHHHHHHHH
Q 043637 28 KTISGHLKSDEPVSYSLYAHLFQLCASSKAIVEARKLESNLV 69 (693)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 69 (693)
+.+..+...+..|++....+.|++|.|.+++..|.++++.++
T Consensus 28 r~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 28 RGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444555555555555555555555555555555444
No 333
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.45 E-value=23 Score=33.28 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=75.1
Q ss_pred HhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCC-CCc-----ccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH
Q 043637 171 KRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQN-KNA-----VSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLN 244 (693)
Q Consensus 171 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 244 (693)
..|.+....+...++.......+++.++..+-.... |+. .+-.+.++. +..-++++++.++..=++-|+.||.
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccch
Confidence 345555666667777777777888888877665542 221 122233343 3345678999999988999999999
Q ss_pred HhHHHHHHHhcCCCCcchhHHHHHHHHHhc
Q 043637 245 FTFANALFACSFLSSPYEGMQIHGVIIKID 274 (693)
Q Consensus 245 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 274 (693)
++++.+|+.+.+.++..+|.++.-.|+...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999888776554
No 334
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=81.12 E-value=51 Score=31.32 Aligned_cols=158 Identities=11% Similarity=0.028 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHhhCCHH---HHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 043637 513 VCRGALVEVYTKCCCLE---YAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILL 586 (693)
Q Consensus 513 ~~~~~l~~~~~~~~~~~---~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 586 (693)
.+...++.+|...+..+ +|..+++.+. +..+.++-.-+..+.+.++.+.+.+.+.+|... +.-....+...+.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHH
Confidence 34455666666655544 3444444433 223444545566666678888888888888885 2212344444444
Q ss_pred HH---hccCcHHHHHHHHHHhHHhcCCCCChh-HHHH-HH-HHHH--hcC------ChHHHHHHHHhC----CCCCCHH-
Q 043637 587 AC---IHEGNVKLALQFFDSMRCKYGIIPQLE-HYEC-MI-KLYC--RYG------YMKELEDFVNRM----PFNPTVP- 647 (693)
Q Consensus 587 ~~---~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~-l~-~~~~--~~g------~~~~A~~~~~~~----~~~~~~~- 647 (693)
.+ ... ....|...++.+... .+.|... .... ++ +.+. +.+ +.+....+++.. ..+-+..
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~-r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLN-RFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 33 333 334566666666542 5555543 2211 11 1121 111 133344444422 1222222
Q ss_pred --hHHHH----HHHHHhcCCccHHHHHHHHHh
Q 043637 648 --MLRKI----FDKCRKNGYATLGEWAARRLN 673 (693)
Q Consensus 648 --~~~~l----~~~~~~~g~~~~A~~~~~~~~ 673 (693)
...++ +..+.+.++++.|..+|+..+
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22223 344567889999999998654
No 335
>PRK10941 hypothetical protein; Provisional
Probab=81.09 E-value=6.3 Score=36.88 Aligned_cols=64 Identities=8% Similarity=-0.165 Sum_probs=34.3
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcch
Q 043637 620 MIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQF 683 (693)
Q Consensus 620 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 683 (693)
+-.+|.+.++++.|+...+.+. .+.++.-++.-+..|.+.|-...|..-++..++..|++|.+.
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 3344555555555555555553 233333455555555555666666666666666666555543
No 336
>PRK11619 lytic murein transglycosylase; Provisional
Probab=79.29 E-value=1e+02 Score=33.57 Aligned_cols=320 Identities=7% Similarity=-0.038 Sum_probs=142.7
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcC-CCchHHHHHHHHHHHHcCCh
Q 043637 217 RRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDF-EGDDVVLGSLTEMYVKCGRL 295 (693)
Q Consensus 217 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g~~ 295 (693)
....+.|++..+..+...+....+. .-..|..+...+. ....+ ++-..+.+..- +.....-..-+..+.+.+++
T Consensus 41 ~~a~~~g~~~~~~~~~~~l~d~pL~-~yl~y~~L~~~l~-~~~~~---ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w 115 (644)
T PRK11619 41 KQAWDNRQMDVVEQLMPTLKDYPLY-PYLEYRQLTQDLM-NQPAV---QVTNFIRANPTLPPARSLQSRFVNELARREDW 115 (644)
T ss_pred HHHHHCCCHHHHHHHHHhccCCCcH-hHHHHHHHHhccc-cCCHH---HHHHHHHHCCCCchHHHHHHHHHHHHHHccCH
Confidence 3445678888887777766432221 1123333322221 11222 34444444332 22333334445556667777
Q ss_pred hHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 043637 296 EDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPE---RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTK 372 (693)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 372 (693)
+.....+... ..+...-.....+....|+.++|......+-- ......+.++..+. +.|.
T Consensus 116 ~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~----------------~~g~ 178 (644)
T PRK11619 116 RGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQ----------------QSGK 178 (644)
T ss_pred HHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHH----------------HcCC
Confidence 7666633222 23444444555566666666555444433311 12233333333333 3332
Q ss_pred CCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHH
Q 043637 373 DIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSN-IFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLT 451 (693)
Q Consensus 373 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~ 451 (693)
..+...+.- +......|+...+..+...+ +++ ......++..+.. ...+...+.. .. ++...-..++.
T Consensus 179 lt~~d~w~R-~~~al~~~~~~lA~~l~~~l-----~~~~~~~a~a~~al~~~---p~~~~~~~~~-~~-~~~~~~~~~~~ 247 (644)
T PRK11619 179 QDPLAYLER-IRLAMKAGNTGLVTYLAKQL-----PADYQTIASALIKLQND---PNTVETFART-TG-PTDFTRQMAAV 247 (644)
T ss_pred CCHHHHHHH-HHHHHHCCCHHHHHHHHHhc-----ChhHHHHHHHHHHHHHC---HHHHHHHhhc-cC-CChhhHHHHHH
Confidence 222222111 22233445555555444433 111 1122333333322 2222111111 11 11111111111
Q ss_pred HHH--hcCChHHHHHHHHHhhhCC--CCCH--HHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhh
Q 043637 452 GYA--RRGQSEEAMTSFSEMQWET--RPSK--FTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKC 525 (693)
Q Consensus 452 ~~~--~~~~~~~a~~~~~~~~~~~--~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (693)
++. ...+.+.|...+....... .+.. .....+.......+..+.+...+....... .+......-+..-.+.
T Consensus 248 ~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~ 325 (644)
T PRK11619 248 AFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGT 325 (644)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHc
Confidence 221 2445688888888765444 2221 222333333333322455555555433322 2344444455555578
Q ss_pred CCHHHHHHHHhcCCC--CCHHHHHH-HHHHHHhCCChHHHHHHHHHHHH
Q 043637 526 CCLEYAIRVFKESSS--LDVIICNS-MILGFCHNERGREALEVFGLMKK 571 (693)
Q Consensus 526 ~~~~~A~~~~~~~~~--~~~~~~~~-l~~~~~~~g~~~~A~~~~~~m~~ 571 (693)
++++.+...+..+.. .+..-|.- +.+++...|+.++|...|+++..
T Consensus 326 ~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 326 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred cCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888888887761 11111221 45565667888888888888743
No 337
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.27 E-value=52 Score=30.24 Aligned_cols=59 Identities=14% Similarity=0.216 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHH-----hccCcHHHHHHHHHHh
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEG-IKPDHITFHGILLAC-----IHEGNVKLALQFFDSM 604 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~ 604 (693)
.|..-|..|...++-..-..++++...-. --|.+.... .|+-| .+.|.+++|..-|-++
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHH
Confidence 55566777777777666667777655421 234443332 33333 4667777766544333
No 338
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.83 E-value=53 Score=30.15 Aligned_cols=94 Identities=11% Similarity=0.082 Sum_probs=60.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCC----CC-------hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh
Q 043637 547 NSMILGFCHNERGREALEVFGLMKKEGIK----PD-------HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLE 615 (693)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~----p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 615 (693)
..|...|...|.+.+-.++++++...--. -| ...|..=|..|..+++-..-..++++...-..--|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 44566666777777777777777653111 11 23566667888888888888888888765435567776
Q ss_pred HHHHHH----HHHHhcCChHHHH-HHHHhC
Q 043637 616 HYECMI----KLYCRYGYMKELE-DFVNRM 640 (693)
Q Consensus 616 ~~~~l~----~~~~~~g~~~~A~-~~~~~~ 640 (693)
+...+- +...+.|++++|- .+|+..
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 665543 2356788888875 444443
No 339
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.59 E-value=5.5 Score=24.21 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMK 570 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 570 (693)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34444445555555555555554443
No 340
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=78.41 E-value=5.8 Score=37.43 Aligned_cols=110 Identities=14% Similarity=0.027 Sum_probs=71.4
Q ss_pred HHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHH
Q 043637 520 EVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKL 596 (693)
Q Consensus 520 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 596 (693)
+.|.+.|++++|+..|.... +.+++++..-..+|.+.+++..|+.=....... | ...+.+|.+.+.-..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL----d----~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL----D----KLYVKAYSRRMQARE 176 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh----h----HHHHHHHHHHHHHHH
Confidence 45899999999999998866 448889999999999999998887766666552 1 233455555554444
Q ss_pred HHHHHHHhHHh----cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 597 ALQFFDSMRCK----YGIIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 597 A~~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
++...+++.++ ..++|+. ..|-..|.+.....++.-+.+.-
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP~~---~ELkK~~a~i~Sl~E~~I~~KsT 221 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEPKN---IELKKSLARINSLRERKIATKST 221 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCccc---HHHHHHHHHhcchHhhhHHhhcC
Confidence 44444444332 1355653 44555666666666655444443
No 341
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.41 E-value=16 Score=32.12 Aligned_cols=72 Identities=17% Similarity=0.070 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhhCC-CCCHHHHHHHHHHhcccCChHHHHHHHHHHHH---hCCCcchhHHHHHHHHHHhhCCHHHHH
Q 043637 460 EEAMTSFSEMQWET-RPSKFTFETLLAACANISSLEQGKQIHCFVIR---NCYEINVVCRGALVEVYTKCCCLEYAI 532 (693)
Q Consensus 460 ~~a~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~ 532 (693)
+.|.+.|-.+...+ --+......+. .|....+.+++.+++-+..+ .+-.+++..+.+|+..|.+.++++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 56777777777666 33333333443 33346677777777777666 233567777777777777777776664
No 342
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.14 E-value=5.6 Score=28.50 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=25.2
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHH
Q 043637 590 HEGNVKLALQFFDSMRCKYGIIPQ-LEHYECMIKLYCRYGYMKELEDF 636 (693)
Q Consensus 590 ~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 636 (693)
...+.++|+..|+.+.++..-.|+ ..++..++.+|+..|++.+++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666653222222 22345556666666666665554
No 343
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=77.46 E-value=79 Score=31.38 Aligned_cols=92 Identities=13% Similarity=-0.037 Sum_probs=53.2
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH-HhcCChHHHHHHHHhCCC--CCC-----HHhHHHHHHHH
Q 043637 585 LLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLY-CRYGYMKELEDFVNRMPF--NPT-----VPMLRKIFDKC 656 (693)
Q Consensus 585 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~--~~~-----~~~~~~l~~~~ 656 (693)
+..+.+.|-+..|.++.+-+.. ....-|+.....+|+.| .++++++--+++.+.... ..+ +...-++.-++
T Consensus 110 i~~L~~RG~~rTAlE~~KlLls-Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLS-LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY 188 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHh-cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence 3567777888888888877763 23222454455555555 467777777777766542 111 01222233333
Q ss_pred HhcCCc---------------cHHHHHHHHHhhcCC
Q 043637 657 RKNGYA---------------TLGEWAARRLNELNP 677 (693)
Q Consensus 657 ~~~g~~---------------~~A~~~~~~~~~~~p 677 (693)
...++. +.|...+++++...|
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 344444 778888887777666
No 344
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.11 E-value=18 Score=31.12 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCc-----------HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 043637 559 GREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGN-----------VKLALQFFDSMRCKYGIIPQLEHYECMIKLYC 625 (693)
Q Consensus 559 ~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 625 (693)
+++|++-|++.+. +.|+. .++..+..++...+. +++|.+.|+++. ...|+...|..-+....
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv---~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAV---DEDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH---HH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH---hcCCCcHHHHHHHHHHH
Confidence 4556666666666 77875 677777766655432 445555555554 35788888877666553
No 345
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=77.02 E-value=22 Score=29.45 Aligned_cols=88 Identities=9% Similarity=0.206 Sum_probs=61.1
Q ss_pred hCCCCCc--hhhhHHHHHHhccCChhhHHHhhccCCC---------CCcccHHHHHHHHHhCCChh-hHHHHHHHhhhCC
Q 043637 71 FYPTPPV--FLLNRAIECYGKCGNLDDARGLFDEMPE---------RDGGSWNAMLGAYTQNGFPG-RTLELFLDMNHSG 138 (693)
Q Consensus 71 ~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~g 138 (693)
.+..++. ...++++.-.+..+++...+.+++.+.. .+..+|+.++.+.++..... -+..+|+-|++.+
T Consensus 31 ~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~ 110 (145)
T PF13762_consen 31 ENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKND 110 (145)
T ss_pred cccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcC
Confidence 3444443 3356777777777888888877777632 35567888888886666533 4667888888877
Q ss_pred CCCCHhhHHHHHHHhhccCC
Q 043637 139 VSANQITYANVLRSSAEELE 158 (693)
Q Consensus 139 ~~~~~~~~~~ll~~~~~~~~ 158 (693)
.+++..-|..+++++.+...
T Consensus 111 ~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 111 IEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred CCCCHHHHHHHHHHHHcCCC
Confidence 88888888888888766533
No 346
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.92 E-value=3.1 Score=26.02 Aligned_cols=26 Identities=8% Similarity=0.243 Sum_probs=15.4
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCC
Q 043637 620 MIKLYCRYGYMKELEDFVNRMPFNPT 645 (693)
Q Consensus 620 l~~~~~~~g~~~~A~~~~~~~~~~~~ 645 (693)
|.++|...|+.+.|..++++....++
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 55666666666666666665543333
No 347
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=76.54 E-value=17 Score=29.42 Aligned_cols=31 Identities=10% Similarity=-0.172 Sum_probs=14.9
Q ss_pred HHHHHHhcCCccHHHHHHHHHhhcCCCCCcc
Q 043637 652 IFDKCRKNGYATLGEWAARRLNELNPWAPFQ 682 (693)
Q Consensus 652 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 682 (693)
+.-++++.|+++++.+.+..+++.+|+|+++
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3334444445555555555555555544443
No 348
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=76.24 E-value=35 Score=32.27 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=59.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCh---HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHH
Q 043637 548 SMILGFCHNERGREALEVFGLMKKEGIKPDH---ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLE-HYECMIKL 623 (693)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~ 623 (693)
.+..+..+.|+..+|.+.++.+.+. .|-. .....|+.+|....-+.+...++-+-.+ ...+.+.. .|+. +
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDd-islPkSA~icYTa---A 353 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD-ISLPKSAAICYTA---A 353 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccCcchHHHHHHH---H
Confidence 3455555677788888777776653 3311 2344566777776666666666554432 12222221 1221 1
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC---CccHHHHHHHHHhhcCCCCCcchhhhh
Q 043637 624 YCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNG---YATLGEWAARRLNELNPWAPFQFKITT 687 (693)
Q Consensus 624 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~l~ 687 (693)
+. ++..+-++. .|+... ++| .-..|.+++.++.+.+|.-|..+.-+-
T Consensus 354 LL------K~RAVa~kF--spd~as---------rRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~k 403 (556)
T KOG3807|consen 354 LL------KTRAVSEKF--SPETAS---------RRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMK 403 (556)
T ss_pred HH------HHHHHHhhc--Cchhhh---------hccccHHHHHHHHHHHHHhhcCCCCcHHHHHHH
Confidence 11 122222222 222221 222 123477888888999997777665543
No 349
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.00 E-value=27 Score=30.54 Aligned_cols=61 Identities=11% Similarity=0.052 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 544 IICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
..|..-..++.+.+.++.|+.-..+.++ +.|+. .....-..+|.+...+++|++=++.+.+
T Consensus 135 Ily~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 135 ILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3566667788888889998888888888 56643 3333445678888888999988888875
No 350
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=75.46 E-value=14 Score=27.22 Aligned_cols=67 Identities=16% Similarity=0.105 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCChhhHH
Q 043637 60 EARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTL 128 (693)
Q Consensus 60 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 128 (693)
.+.++++.+.+.|+- +......+-.+-...|+.+.|++++..++ +.+..|..++.++...|.-.-|.
T Consensus 20 ~~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 456788888888753 34444444444446789999999999999 88889999999998888766554
No 351
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.98 E-value=37 Score=31.54 Aligned_cols=87 Identities=8% Similarity=0.031 Sum_probs=42.2
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCC-CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh----
Q 043637 450 LTGYARRGQSEEAMTSFSEMQWET-RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTK---- 524 (693)
Q Consensus 450 ~~~~~~~~~~~~a~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 524 (693)
|.+++..+++.+++...-+--+.. +-.......-|-.|++.+....+.++-..-.+..-+-+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 344555555555554443332222 222223333334455666666666655555553333333345555555543
Q ss_pred -hCCHHHHHHHHh
Q 043637 525 -CCCLEYAIRVFK 536 (693)
Q Consensus 525 -~~~~~~A~~~~~ 536 (693)
.|.+++|+++..
T Consensus 170 PLG~~~eAeelv~ 182 (309)
T PF07163_consen 170 PLGHFSEAEELVV 182 (309)
T ss_pred ccccHHHHHHHHh
Confidence 466677766663
No 352
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.39 E-value=8.1 Score=21.82 Aligned_cols=24 Identities=13% Similarity=0.254 Sum_probs=15.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHH
Q 043637 583 GILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 583 ~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
.+..++.+.|++++|.+.|+++.+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344566666677777777766664
No 353
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=73.36 E-value=52 Score=27.31 Aligned_cols=50 Identities=12% Similarity=0.130 Sum_probs=34.8
Q ss_pred CcccHHHHHHHHHhcCC-chHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCC
Q 043637 208 NAVSWNVIVRRYLVAGN-GKEAVVMFFKMLREDIRPLNFTFANALFACSFL 257 (693)
Q Consensus 208 ~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 257 (693)
+..+|..++.+..+... --.+..+|.-|++.+.+++..-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 45567777777755554 345667777777777778888888888777665
No 354
>PRK13342 recombination factor protein RarA; Reviewed
Probab=73.27 E-value=50 Score=33.64 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=27.4
Q ss_pred cHHHHHHHHHh---CCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHh
Q 043637 110 SWNAMLGAYTQ---NGFPGRTLELFLDMNHSGVSANQITYANVLRSS 153 (693)
Q Consensus 110 ~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 153 (693)
.+..+++++.+ ..+++.|+..+..|.+.|..|....-..+..++
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34445555554 467888888888888887666654444444333
No 355
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=73.25 E-value=4.8 Score=35.69 Aligned_cols=58 Identities=14% Similarity=0.055 Sum_probs=42.1
Q ss_pred HHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 623 LYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 623 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
...+.|+.+-|.+++.+.. .+.....|..+...-.+.|+++.|..++++.++++|+|.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3455677777777777664 234455677777777888888888888888888888654
No 356
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.02 E-value=23 Score=31.38 Aligned_cols=55 Identities=5% Similarity=-0.086 Sum_probs=24.3
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHH
Q 043637 451 TGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIR 505 (693)
Q Consensus 451 ~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 505 (693)
+.+.+.+...+++...+.-.+..+.+..+-..++..+|-.|++++|..-++.+-+
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 3344444444444444444333333333444444444455555555444444333
No 357
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.28 E-value=15 Score=32.51 Aligned_cols=52 Identities=10% Similarity=0.080 Sum_probs=28.0
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 590 HEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 590 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
...+.+......+.+.+-....|++.+|..++..+...|+.++|.++..++.
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444444443333455666666666666666666666666665553
No 358
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.24 E-value=30 Score=31.31 Aligned_cols=59 Identities=8% Similarity=-0.016 Sum_probs=31.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCC
Q 043637 619 CMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNP 677 (693)
Q Consensus 619 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 677 (693)
.+..++...|++-++++.-.+.. .+.++..|..-..+.+..=+..+|..-+.++++++|
T Consensus 235 Ny~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 235 NYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 33445555566666655555543 234444444444444444455666666666666666
No 359
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=70.75 E-value=1.6e+02 Score=31.89 Aligned_cols=38 Identities=13% Similarity=0.280 Sum_probs=21.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 043637 348 LAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCA 387 (693)
Q Consensus 348 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 387 (693)
...+.-.|+++.|++.+-+ ..+...|.+.+.+.+..+.
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~g 302 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYG 302 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcC
Confidence 3455667888888888766 2334556666666655443
No 360
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=70.66 E-value=66 Score=32.25 Aligned_cols=54 Identities=7% Similarity=0.083 Sum_probs=33.6
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCChH--HHHHHHHHH--hccCcHHHHHHHHHHhHH
Q 043637 552 GFCHNERGREALEVFGLMKKEGIKPDHI--TFHGILLAC--IHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 552 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~--~~~g~~~~A~~~~~~~~~ 606 (693)
.+...+++..|.++++.+... ++++.. .+..+..+| ...-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 444667788888888887776 555443 333343444 345567777777777654
No 361
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=70.47 E-value=5.1 Score=37.12 Aligned_cols=61 Identities=5% Similarity=-0.060 Sum_probs=37.6
Q ss_pred HhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhh
Q 043637 625 CRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKI 685 (693)
Q Consensus 625 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 685 (693)
.+.|+.++|..+|+... .+.++..+..++......++.-+|.+.|-+++.++|.++.++.+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 35666677776666442 23344455555555555667777777777777777776666554
No 362
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.20 E-value=50 Score=30.74 Aligned_cols=87 Identities=14% Similarity=0.200 Sum_probs=42.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHH----
Q 043637 348 LAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRK---- 423 (693)
Q Consensus 348 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 423 (693)
|.+++..++|.+++.+.-+--+.--+........-|-.|.+.++...+.++-....+..-.-+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5677777778777766544433222222333333444455555555555555444433222222234444444332
Q ss_pred -cCChHHHHHHH
Q 043637 424 -CGNLRSARIWF 434 (693)
Q Consensus 424 -~~~~~~a~~~~ 434 (693)
.|.+++|++.+
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 35555554443
No 363
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=69.94 E-value=42 Score=25.93 Aligned_cols=81 Identities=5% Similarity=-0.034 Sum_probs=50.3
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHH
Q 043637 156 ELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKM 235 (693)
Q Consensus 156 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 235 (693)
....++|..+.+.+...+- ....+.-..+..+.+.|++++|...=.....||...|-.|-. .+.|-.+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 3456778888887777663 333344444566778899999955545555678777766654 4677778888877777
Q ss_pred HHCC
Q 043637 236 LRED 239 (693)
Q Consensus 236 ~~~g 239 (693)
..+|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 6554
No 364
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=69.22 E-value=9.7 Score=38.89 Aligned_cols=101 Identities=10% Similarity=-0.039 Sum_probs=72.3
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccH
Q 043637 587 ACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATL 664 (693)
Q Consensus 587 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 664 (693)
-+...|+...|...+..+........++ ....|.....+.|...+|-.++.+.. .-..+.+.-.+++++....+.++
T Consensus 616 ywr~~gn~~~a~~cl~~a~~~~p~~~~v-~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRALNLAPLQQDV-PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eeeecCCcHHHHHHHHHHhccChhhhcc-cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 3345788899999888876432222222 34557778888888888888877654 22334456667888888889999
Q ss_pred HHHHHHHHhhcCCCCCcchhhhhh
Q 043637 665 GEWAARRLNELNPWAPFQFKITTN 688 (693)
Q Consensus 665 A~~~~~~~~~~~p~~~~~~~~l~~ 688 (693)
|.+.++.+++++|+++..-.+|-.
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHH
Confidence 999999999999998876666543
No 365
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.81 E-value=87 Score=28.03 Aligned_cols=126 Identities=12% Similarity=0.010 Sum_probs=74.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHH-hcCCCCChhHHHHHHHHH
Q 043637 547 NSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRC-KYGIIPQLEHYECMIKLY 624 (693)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~p~~~~~~~l~~~~ 624 (693)
+.-+..+.+.+..++|+...++-.+. +| |..+-..+++.++-.|+|++|..-++..-+ .....+-..+|..++++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~- 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC- 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH-
Confidence 44566777888999999988887774 56 556777788999999999999988887753 11223335566666654
Q ss_pred HhcCChHHHH-HHHHhCC-----CCCCHHhHHHHHHHHHh-cCCccH-HHHHHHHHhhcCCCCCc
Q 043637 625 CRYGYMKELE-DFVNRMP-----FNPTVPMLRKIFDKCRK-NGYATL-GEWAARRLNELNPWAPF 681 (693)
Q Consensus 625 ~~~g~~~~A~-~~~~~~~-----~~~~~~~~~~l~~~~~~-~g~~~~-A~~~~~~~~~~~p~~~~ 681 (693)
+.+. ++|.--. ..|.+.....+..+... ++...+ +...-+..++--|..++
T Consensus 82 ------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 82 ------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred ------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 2222 2333211 12333333344444433 333444 44455666666665443
No 366
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.50 E-value=12 Score=23.43 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=12.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 043637 549 MILGFCHNERGREALEVFGLMKK 571 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~ 571 (693)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555554
No 367
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.98 E-value=16 Score=26.29 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=34.9
Q ss_pred hCCChHHHHHHHHHHHHCCCCC-Ch-HHHHHHHHHHhccCcHHHHHHHH
Q 043637 555 HNERGREALEVFGLMKKEGIKP-DH-ITFHGILLACIHEGNVKLALQFF 601 (693)
Q Consensus 555 ~~g~~~~A~~~~~~m~~~g~~p-~~-~~~~~l~~~~~~~g~~~~A~~~~ 601 (693)
..++.++|+..|....+.-..| +. .++..++.+++..|++++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788999998888854333 22 56777889999999998877653
No 368
>PHA02875 ankyrin repeat protein; Provisional
Probab=67.86 E-value=1.4e+02 Score=30.45 Aligned_cols=143 Identities=13% Similarity=-0.044 Sum_probs=62.9
Q ss_pred hcCccHHHHHHHHHHHHHhCCCCCchh--hhHHHHHHhccCChhhHHHhhccCCCCCc---ccHHHHHHHHHhCCChhhH
Q 043637 53 ASSKAIVEARKLESNLVTFYPTPPVFL--LNRAIECYGKCGNLDDARGLFDEMPERDG---GSWNAMLGAYTQNGFPGRT 127 (693)
Q Consensus 53 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a 127 (693)
...|+.+.+ +.+.+.|..|+... ....+...+..|+.+-+.-+++.-..++. ... ..+...+..|+.+.+
T Consensus 10 ~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~-t~L~~A~~~g~~~~v 84 (413)
T PHA02875 10 ILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIE-SELHDAVEEGDVKAV 84 (413)
T ss_pred HHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcc-cHHHHHHHCCCHHHH
Confidence 344555443 33444565554422 23445555566777666555544322221 122 233444566666554
Q ss_pred HHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhh--HhHHHHHhhcCCCHHHHHHHHhccC
Q 043637 128 LELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVIL--ESSLVDAYGKCMVMTDARRMFDDIQ 205 (693)
Q Consensus 128 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~ 205 (693)
..+++.-....-..+..-. ..+...+..|+. ++.+.+.+.|..++... -.+.+...+..|+.+-+.-+++.-.
T Consensus 85 ~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~ 159 (413)
T PHA02875 85 EELLDLGKFADDVFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKA 159 (413)
T ss_pred HHHHHcCCcccccccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence 4444322110000011111 122233344544 34444455565554321 1234445556677766666665443
No 369
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.70 E-value=93 Score=32.48 Aligned_cols=46 Identities=17% Similarity=0.130 Sum_probs=25.0
Q ss_pred HhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043637 321 AISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMR 368 (693)
Q Consensus 321 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 368 (693)
.+.|+++.|.++..+. .+..-|..|..+....+++..|.+.|....
T Consensus 648 l~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 3444555555444332 244456666666666666666666665543
No 370
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=67.49 E-value=53 Score=25.04 Aligned_cols=85 Identities=15% Similarity=0.062 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCChhhHHHHHHHhhhC
Q 043637 58 IVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHS 137 (693)
Q Consensus 58 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 137 (693)
-++|.-+-+.+...+- ....+--.-+..+..+|++++|..+.+...-||...|-+|-.. +.|-.++...-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 4566666555544431 1222333345566678888888888888877787777766433 455556666666667666
Q ss_pred CCCCCHhhH
Q 043637 138 GVSANQITY 146 (693)
Q Consensus 138 g~~~~~~~~ 146 (693)
| .|...+|
T Consensus 98 g-~p~lq~F 105 (115)
T TIGR02508 98 G-DPRLQTF 105 (115)
T ss_pred C-CHHHHHH
Confidence 5 4443333
No 371
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.45 E-value=1.7e+02 Score=32.74 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=22.6
Q ss_pred ccHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043637 342 ISWNAMLAGYTRSLLWKEALDFVFLMRK 369 (693)
Q Consensus 342 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 369 (693)
.-|..|+..|...|+.++|+++|.+..+
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 3477888888888888888888888765
No 372
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.41 E-value=55 Score=34.03 Aligned_cols=98 Identities=20% Similarity=0.096 Sum_probs=57.3
Q ss_pred ccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHH
Q 043637 89 KCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGL 168 (693)
Q Consensus 89 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 168 (693)
+.|+++.|.++..+ ..+..-|..|..+..+.+++..|.+.|...+. |..|+-.+...|+.+....+-..
T Consensus 649 ~lgrl~iA~~la~e--~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVE--ANSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHh--hcchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 45566666655432 23445577777888888888888777766543 34555556666666655555555
Q ss_pred HHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhc
Q 043637 169 IVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDD 203 (693)
Q Consensus 169 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 203 (693)
..+.|. .|....+|...|+++++.+++.+
T Consensus 718 ~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 718 AKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 555552 12223344455666666666544
No 373
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=67.14 E-value=94 Score=27.78 Aligned_cols=30 Identities=10% Similarity=-0.001 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhcccCChHHHHHHHHHHHHh
Q 043637 477 KFTFETLLAACANISSLEQGKQIHCFVIRN 506 (693)
Q Consensus 477 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 506 (693)
+..|+.+.--+...|+++.|.+.|+...+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence 344454444455555555555555555543
No 374
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.77 E-value=1.8e+02 Score=31.01 Aligned_cols=95 Identities=9% Similarity=-0.079 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcC-----ChHHHHHHHHhhcCCCChhhHHHHHHHHHhc---CChHHHHHHHHHhhhCCCCCHHHHHHHH
Q 043637 413 VSNALLDMYRKCG-----NLRSARIWFYQMSQRRDKVSWNAVLTGYARR---GQSEEAMTSFSEMQWETRPSKFTFETLL 484 (693)
Q Consensus 413 ~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~p~~~~~~~ll 484 (693)
....+..+|.+.. +.+.|...+.......+...--.+...+... .+...|.++|......|.+...-+..+.
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~ 369 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALC 369 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3444555555533 3455666666655544433333333333322 3567888888887777755444443333
Q ss_pred HHhc--ccCChHHHHHHHHHHHHhC
Q 043637 485 AACA--NISSLEQGKQIHCFVIRNC 507 (693)
Q Consensus 485 ~~~~--~~~~~~~a~~~~~~~~~~~ 507 (693)
.... -..+.+.|..++.+..+.|
T Consensus 370 y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 370 YELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 3322 3456777778887777776
No 375
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=66.57 E-value=15 Score=31.52 Aligned_cols=66 Identities=17% Similarity=0.154 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHCCCCC-ChHHHH---HHHHHHhccCcHHHHHHHHHHhHHhc----CCCCCh-hHHHHHHHHHHh
Q 043637 559 GREALEVFGLMKKEGIKP-DHITFH---GILLACIHEGNVKLALQFFDSMRCKY----GIIPQL-EHYECMIKLYCR 626 (693)
Q Consensus 559 ~~~A~~~~~~m~~~g~~p-~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~ 626 (693)
++.|.+..+.-.. ..| |...++ ..+.-+.+.....++.+++++.+.++ .+.|+. ..+..+..+|..
T Consensus 7 FE~ark~aea~y~--~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYA--KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 4555666655444 234 333333 33334444455566767776665432 234442 334444444443
No 376
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=66.27 E-value=72 Score=31.65 Aligned_cols=28 Identities=11% Similarity=0.030 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 578 HITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 578 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
..++..+...|..+|+.+.|.++++++.
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555556666666666666555553
No 377
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=65.73 E-value=36 Score=29.30 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=9.2
Q ss_pred HHHhcCChHHHHHHHHhCC
Q 043637 623 LYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 623 ~~~~~g~~~~A~~~~~~~~ 641 (693)
.|.+.|++++|.++|++.-
T Consensus 120 VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHhcCchHHHHHHHHHHh
Confidence 3444555555555554443
No 378
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=65.63 E-value=72 Score=25.86 Aligned_cols=41 Identities=5% Similarity=-0.113 Sum_probs=26.9
Q ss_pred HHHHHHHhCC----CCCCHHhHHHHHHHHHhcCCccHHHHHHHHH
Q 043637 632 ELEDFVNRMP----FNPTVPMLRKIFDKCRKNGYATLGEWAARRL 672 (693)
Q Consensus 632 ~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 672 (693)
++.++|+.|. ....+..|......+...|++++|.+++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 6666666553 3455667777777777777788877777654
No 379
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=65.28 E-value=70 Score=28.79 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=10.8
Q ss_pred HHHHHhCCChHHHHHHHHHHH
Q 043637 550 ILGFCHNERGREALEVFGLMK 570 (693)
Q Consensus 550 ~~~~~~~g~~~~A~~~~~~m~ 570 (693)
|......|+++.|++....+.
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhC
Confidence 444455555555555555443
No 380
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.17 E-value=1.2e+02 Score=28.46 Aligned_cols=58 Identities=12% Similarity=-0.018 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 043637 617 YECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNE 674 (693)
Q Consensus 617 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 674 (693)
++...+.|..+|.+.+|.++.++.. .+-+...+..+...+...||--.|..-++++-+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4455677889999999999998886 345667888899999999987777766666543
No 381
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.24 E-value=51 Score=26.34 Aligned_cols=57 Identities=12% Similarity=0.181 Sum_probs=39.1
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 043637 563 LEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMI 621 (693)
Q Consensus 563 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 621 (693)
.+.+..+..-.+-|++.....-+++|.+.+|+..|..+|+-++. .+.+....|-.++
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~--K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD--KCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcccHHHHHHHHH
Confidence 34455566666788888888888888888888888888888764 3444444454443
No 382
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=64.19 E-value=2.7e+02 Score=32.03 Aligned_cols=154 Identities=9% Similarity=-0.056 Sum_probs=87.2
Q ss_pred cchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHH-HHHHHHHHHHCCCCCChHHHHHHHHHH
Q 043637 510 INVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGRE-ALEVFGLMKKEGIKPDHITFHGILLAC 588 (693)
Q Consensus 510 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~l~~~~ 588 (693)
++..+-...+.++.+.+..+. +......++..+-...+.++...+..+. +...+..+.. .+|...-...+.++
T Consensus 726 ~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aL 799 (897)
T PRK13800 726 PDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAAL 799 (897)
T ss_pred CCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 344444455555554443322 2222335666666667777776665432 3444555544 45666666777777
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHH
Q 043637 589 IHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWA 668 (693)
Q Consensus 589 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 668 (693)
...|..+.+...+..+.. .++..+-...+.++.+.+. +++...+..+...++...-...+.++...+.-..+...
T Consensus 800 g~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~ 874 (897)
T PRK13800 800 AELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAA-DVAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDA 874 (897)
T ss_pred HhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhccc-cchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHH
Confidence 777775555444544443 2455555556677777765 45666666665566666655666666654334466667
Q ss_pred HHHHhh
Q 043637 669 ARRLNE 674 (693)
Q Consensus 669 ~~~~~~ 674 (693)
+..+++
T Consensus 875 L~~al~ 880 (897)
T PRK13800 875 LTTALT 880 (897)
T ss_pred HHHHHh
Confidence 766665
No 383
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=63.96 E-value=23 Score=23.31 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=21.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHH
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGIKPDHITFHGI 584 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 584 (693)
+.-++.+.|++++|.+..+.+.+ +.|+......|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 45566777777777777777777 67765444333
No 384
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=63.93 E-value=37 Score=31.67 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=22.4
Q ss_pred HHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 043637 520 EVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLM 569 (693)
Q Consensus 520 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 569 (693)
..|..+|.+.+|.++.++.. +.+...|-.++..+...|+--.|.+.++++
T Consensus 287 ~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34444444555544444443 233334444444455444444444444333
No 385
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.49 E-value=49 Score=24.49 Aligned_cols=64 Identities=8% Similarity=-0.066 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHH
Q 043637 497 KQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREA 562 (693)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 562 (693)
.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. ..+..|..++.++...|..+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3445555555432 22222222222224455555666655555 4444555566665555554433
No 386
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=63.26 E-value=6.8 Score=22.03 Aligned_cols=28 Identities=14% Similarity=-0.111 Sum_probs=20.5
Q ss_pred CCccHHHHHHHHHhhcCCCCCcchhhhh
Q 043637 660 GYATLGEWAARRLNELNPWAPFQFKITT 687 (693)
Q Consensus 660 g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 687 (693)
|+.+.|..+++++++..|.++..+...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 4567788888888888887766665544
No 387
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=62.85 E-value=36 Score=27.11 Aligned_cols=81 Identities=10% Similarity=0.159 Sum_probs=58.0
Q ss_pred cCCCCCChhHHHHHHHHhhcCc--cHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCC--C-cc
Q 043637 35 KSDEPVSYSLYAHLFQLCASSK--AIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPER--D-GG 109 (693)
Q Consensus 35 ~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~-~~ 109 (693)
.+|.. +..-|..=-.-|.... +-=+.++-+..+...++-|++.+...-++++.+-+++..|.++|+.++.. + -.
T Consensus 41 ~hg~e-t~EEfd~ry~~yf~r~~iD~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~ 119 (149)
T KOG4077|consen 41 EHGPE-TAEEFDARYEKYFNRPEIDGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQ 119 (149)
T ss_pred hcCcc-cHHHHHHHHHHHcCcccchHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHH
Confidence 44444 6666766666665533 33467778888888899999999999999999999999999999887532 2 22
Q ss_pred cHHHHHH
Q 043637 110 SWNAMLG 116 (693)
Q Consensus 110 ~~~~li~ 116 (693)
.|-.++.
T Consensus 120 ~Y~y~v~ 126 (149)
T KOG4077|consen 120 VYPYYVK 126 (149)
T ss_pred HHHHHHH
Confidence 4655553
No 388
>PRK10941 hypothetical protein; Provisional
Probab=62.58 E-value=89 Score=29.41 Aligned_cols=74 Identities=12% Similarity=0.058 Sum_probs=39.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 043637 546 CNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMI 621 (693)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 621 (693)
.+.+-.+|.+.++++.|+++.+.+.. +.|+. .-+.--.-.|.+.|.+..|..=++...+...-.|+.......+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 34455556666666666666666666 45542 3344444456666666666666666554333344444333333
No 389
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=61.73 E-value=92 Score=28.35 Aligned_cols=118 Identities=7% Similarity=-0.078 Sum_probs=74.1
Q ss_pred HHhhCCHHHHHHHHhcCC--CCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHH-HHHHHHHhccCcHHHH
Q 043637 522 YTKCCCLEYAIRVFKESS--SLDV-IICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITF-HGILLACIHEGNVKLA 597 (693)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~A 597 (693)
|....+++.|...|.+.. .|.. .-|..-+.++.+..+++.+..=-.+.++ +.||...- ..+..+......++.|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 445566778888776655 5555 4556677777888888888877777777 77876443 3444666777788888
Q ss_pred HHHHHHhHH---hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 598 LQFFDSMRC---KYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 598 ~~~~~~~~~---~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
+..+.+... ...+.|-..+...|..+=.+.=...+..++.++..
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 888877732 12344445555555554444444445555555554
No 390
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=61.19 E-value=22 Score=21.12 Aligned_cols=31 Identities=13% Similarity=-0.007 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCccHHHHH--HHHHhhcCCCC
Q 043637 649 LRKIFDKCRKNGYATLGEWA--ARRLNELNPWA 679 (693)
Q Consensus 649 ~~~l~~~~~~~g~~~~A~~~--~~~~~~~~p~~ 679 (693)
+-.+...+...|++++|+.. ++-+-.++|.|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 34456666777888888888 44666666653
No 391
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=60.97 E-value=24 Score=35.44 Aligned_cols=104 Identities=14% Similarity=0.107 Sum_probs=70.9
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHH-HHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcC
Q 043637 551 LGFCHNERGREALEVFGLMKKEGIKPDHITFHGIL-LACIHEGNVKLALQFFDSMRCKYGIIPQ-LEHYECMIKLYCRYG 628 (693)
Q Consensus 551 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 628 (693)
..+.+.+.++.|..++.+.++ +.||...|...= .++.+.+++..|+.=+..+++. .|+ ...|..-..++.+.+
T Consensus 12 n~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhHH
Confidence 344566788899999999998 788776555544 7888888888888777777642 233 233333345556667
Q ss_pred ChHHHHHHHHhCC-CCCCHHhHHHHHHHHHhc
Q 043637 629 YMKELEDFVNRMP-FNPTVPMLRKIFDKCRKN 659 (693)
Q Consensus 629 ~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~ 659 (693)
++.+|...|+... ..|+.+.....+.-|...
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 7788888777765 567777766666666554
No 392
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=58.69 E-value=1.3e+02 Score=27.16 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhccCcH-------HHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 579 ITFHGILLACIHEGNV-------KLALQFFDSMRCKYGIIPQ-----LEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
..+..+.+.|...|+- ..|.+.|++..+. ...|. ..+.-.++....+.|+.++|.++|.++.
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~-e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYEN-EDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHh-CcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3444555667666663 3455555555542 22211 1223334455666777777777777664
No 393
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=58.44 E-value=1.7e+02 Score=27.72 Aligned_cols=60 Identities=10% Similarity=-0.090 Sum_probs=26.6
Q ss_pred CCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHh-CCCCchhhHhHHHHHhhcCCCHHHHH
Q 043637 139 VSANQITYANVLRSSAEELELGVSKQLHGLIVKR-GFCGNVILESSLVDAYGKCMVMTDAR 198 (693)
Q Consensus 139 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~ 198 (693)
..++..+...++..++..+++....++++..... +...|...|...|+.....||..-..
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ 258 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMR 258 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHH
Confidence 3444445555555555555555555554444333 23333334444444444444433333
No 394
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=57.96 E-value=1.4e+02 Score=26.74 Aligned_cols=178 Identities=12% Similarity=-0.036 Sum_probs=95.3
Q ss_pred HcCChHHHHHHHHhhcC-CC-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHH
Q 043637 423 KCGNLRSARIWFYQMSQ-RR-DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIH 500 (693)
Q Consensus 423 ~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 500 (693)
..|-+.-|..-+.+.+. .| -+..||-+.--+...|+++.|.+.|+...+..+....+...-.-++.-.|++..|.+-+
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHH
Confidence 33444445444444443 34 34567777777788899999999988887665444444444344455668888887665
Q ss_pred HHHHHhCC-CcchhHHHHHHHHHHhhCCHHHHHH-HHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-
Q 043637 501 CFVIRNCY-EINVVCRGALVEVYTKCCCLEYAIR-VFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD- 577 (693)
Q Consensus 501 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~- 577 (693)
...-.... +|-...|--+. ...-+..+|.. +.++....|..-|...+..+.-..-.+ ..+++++.+- -.-+
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~-a~~n~ 230 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKAD-ATDNT 230 (297)
T ss_pred HHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhh-ccchH
Confidence 55544322 22222222221 22234445543 333444555555554444433221111 2233333331 1111
Q ss_pred ------hHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 578 ------HITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 578 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
..||..|..-+...|+.++|..+|+....
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 24677777777788888888888877664
No 395
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.50 E-value=3.1e+02 Score=30.49 Aligned_cols=174 Identities=11% Similarity=0.111 Sum_probs=87.4
Q ss_pred HHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHHHH
Q 043637 285 LTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFV 364 (693)
Q Consensus 285 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 364 (693)
+-..|...|++++|..+-+.-++.=..++..-.+.|.+.+++..|-+++-++. ..+..+.--+....+.+ ++..|
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~----~~FEEVaLKFl~~~~~~-~L~~~ 438 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETL----SSFEEVALKFLEINQER-ALRTF 438 (911)
T ss_pred HHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh----hhHHHHHHHHHhcCCHH-HHHHH
Confidence 34567788999999888766522111234444566777788888888887773 34444544555555544 44433
Q ss_pred HHHHHcCCCCCHhhHHH-----HHHHH-hcccchh----hHHHHHHH--------HHH-hCCCCchhHHHHHHHHHHHcC
Q 043637 365 FLMRKTTKDIDQVTLGL-----ILNVC-AGLSEIK----MGKEVHGF--------IHR-NDYSSNIFVSNALLDMYRKCG 425 (693)
Q Consensus 365 ~~m~~~~~~p~~~~~~~-----ll~~~-~~~~~~~----~a~~~~~~--------~~~-~~~~~~~~~~~~l~~~~~~~~ 425 (693)
-.=+-..++|...+-.. ++..+ .+.++.+ .+..-++. +.. .....+.....+........|
T Consensus 439 L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~ 518 (911)
T KOG2034|consen 439 LDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHG 518 (911)
T ss_pred HHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHcc
Confidence 32222334454433322 22222 1222222 22221111 111 001111122223334444556
Q ss_pred ChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHh
Q 043637 426 NLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEM 469 (693)
Q Consensus 426 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 469 (693)
+.+.. -.+...+. -|..++.-+++.+.+++|++++..-
T Consensus 519 ~~e~l-l~fA~l~~-----d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 519 RQEEL-LQFANLIK-----DYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred CHHHH-HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66655 33333222 3666777788888888888887664
No 396
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=56.62 E-value=1.6e+02 Score=26.83 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 043637 540 SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD 577 (693)
Q Consensus 540 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 577 (693)
.|.+.....++..|.+ +++++|.+++.++-+.|..|.
T Consensus 236 ~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred CCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHH
Confidence 5777777777766544 468888888888888887774
No 397
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.51 E-value=76 Score=24.84 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=23.5
Q ss_pred ccHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043637 342 ISWNAMLAGYTRSLLWKEALDFVFLMRK 369 (693)
Q Consensus 342 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 369 (693)
.-|..|+..|...|..++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588888888899999999999888876
No 398
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=56.51 E-value=3e+02 Score=29.98 Aligned_cols=112 Identities=13% Similarity=0.046 Sum_probs=54.8
Q ss_pred HHHHHHHHHHH-hCCCCCc--hhhhHHHHHHh-ccCChhhHHHhhccCC----CCCcc-----cHHHHHHHHHhCCChhh
Q 043637 60 EARKLESNLVT-FYPTPPV--FLLNRAIECYG-KCGNLDDARGLFDEMP----ERDGG-----SWNAMLGAYTQNGFPGR 126 (693)
Q Consensus 60 ~a~~~~~~~~~-~~~~~~~--~~~~~l~~~~~-~~g~~~~A~~~~~~~~----~~~~~-----~~~~li~~~~~~~~~~~ 126 (693)
.|...++.+.+ ..++|.. .++-.+...|. ...+++.|+..+++.. +++.. +...++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 45566666653 3333332 33445566655 5677788877777542 12111 1223444454444444
Q ss_pred HHHHHHHhhhC----CCCCCHhhHHHH-HHHhhccCChHHHHHHHHHHHHh
Q 043637 127 TLELFLDMNHS----GVSANQITYANV-LRSSAEELELGVSKQLHGLIVKR 172 (693)
Q Consensus 127 a~~~~~~m~~~----g~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~ 172 (693)
|...+++..+. +..+-...|..+ +..+...++...|.+.++.+...
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~ 168 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQL 168 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777665543 112222233333 22222235666666666666544
No 399
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=56.44 E-value=1.8e+02 Score=27.34 Aligned_cols=33 Identities=9% Similarity=0.153 Sum_probs=23.9
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhH
Q 043637 215 IVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTF 247 (693)
Q Consensus 215 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 247 (693)
+.+-..+.+++++|+..+.+....|+..|..+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 344456678888888888888888877766543
No 400
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=55.71 E-value=40 Score=21.62 Aligned_cols=33 Identities=15% Similarity=0.290 Sum_probs=18.7
Q ss_pred HhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHH
Q 043637 119 TQNGFPGRTLELFLDMNHSGVSANQITYANVLR 151 (693)
Q Consensus 119 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 151 (693)
.+.|-..++..++++|.+.|+..+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555556666666666666655555555543
No 401
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=54.65 E-value=2.5e+02 Score=28.68 Aligned_cols=107 Identities=14% Similarity=0.100 Sum_probs=66.7
Q ss_pred HHHhCCChHHHHHHHHHHH---HCC--CCCCh---HHHHHHHHHHhccCcHHHHHHHHHHhHH------hcCCCCCh---
Q 043637 552 GFCHNERGREALEVFGLMK---KEG--IKPDH---ITFHGILLACIHEGNVKLALQFFDSMRC------KYGIIPQL--- 614 (693)
Q Consensus 552 ~~~~~g~~~~A~~~~~~m~---~~g--~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~p~~--- 614 (693)
-+..+|++.+|.+++...- +.| +.|.. ..|+.|.-...+.|.+.-+..+|.++.+ ..|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3456788888888775431 122 22211 2245565566666776666666665542 13655532
Q ss_pred -------hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHh
Q 043637 615 -------EHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRK 658 (693)
Q Consensus 615 -------~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 658 (693)
.+.....-.|...|++-.|.+-|.+.. +..++..|-.+.++|..
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 223334556788899999988888775 57788888888888874
No 402
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=54.45 E-value=5.5e+02 Score=32.49 Aligned_cols=161 Identities=13% Similarity=0.035 Sum_probs=101.2
Q ss_pred HHHHHhhcCccHHHHHHHHHHHHHhCCC--CCchhhhHHHHHHhccCChhhHHHhhcc-CCCCCcccHHHHHHHHHhCCC
Q 043637 47 HLFQLCASSKAIVEARKLESNLVTFYPT--PPVFLLNRAIECYGKCGNLDDARGLFDE-MPERDGGSWNAMLGAYTQNGF 123 (693)
Q Consensus 47 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~ 123 (693)
.+..+-.+.+.+..|...++.-.....+ .....+..+...|+.-+++|+...+... ...+ . ...-|-.....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~--s-l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP--S-LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc--c-HHHHHHHHHhhcc
Confidence 5566777888888888888873111111 1123334455588888888888877663 2322 2 2334445677899
Q ss_pred hhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhH-HHHHhhcCCCHHHHHHHHh
Q 043637 124 PGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESS-LVDAYGKCMVMTDARRMFD 202 (693)
Q Consensus 124 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~ 202 (693)
+..|...|+.+.+.+ ++...+++.+++.....|.+....-..+-....- .+....++. -+.+--+.++++...+...
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999999875 4447788888888888888877776554443322 223333333 2444456677777766655
Q ss_pred ccCCCCcccHHHH
Q 043637 203 DIQNKNAVSWNVI 215 (693)
Q Consensus 203 ~~~~~~~~~~~~l 215 (693)
..+..+|...
T Consensus 1543 ---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVE 1552 (2382)
T ss_pred ---cccccchhHH
Confidence 4566666655
No 403
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=53.82 E-value=3.6e+02 Score=30.10 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=14.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHH
Q 043637 583 GILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 583 ~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
.|+......|++++|...++++..
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 444566666666666666666653
No 404
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=53.44 E-value=1.5e+02 Score=27.01 Aligned_cols=119 Identities=8% Similarity=-0.099 Sum_probs=77.4
Q ss_pred HHhcccCChHHHHHHHHHHHHhCCCcch-hHHHHHHHHHHhhCCHHHHHHHHhcCC--CCCHH-HHHHHHHHHHhCCChH
Q 043637 485 AACANISSLEQGKQIHCFVIRNCYEINV-VCRGALVEVYTKCCCLEYAIRVFKESS--SLDVI-ICNSMILGFCHNERGR 560 (693)
Q Consensus 485 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~-~~~~l~~~~~~~g~~~ 560 (693)
+.|.....++.|..-+.+.+. +.|+. .-|..-+.++.+..+++.+..--.+.. .|+.+ ..-.+..++.....++
T Consensus 18 nk~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 346677788888886666655 45555 444556677788888888777666555 34443 3444566677788899
Q ss_pred HHHHHHHHHHHC----CCCCChHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 561 EALEVFGLMKKE----GIKPDHITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 561 ~A~~~~~~m~~~----g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
+|+..+.+.... .+.|-......|..+--..=...+..++.++..
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 999999887543 234444566666666555555566666666553
No 405
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=53.25 E-value=69 Score=25.74 Aligned_cols=59 Identities=8% Similarity=0.146 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCCccHHHHHHHHHh
Q 043637 615 EHYECMIKLYCRYGYMKELEDFVNRMPFNPT-VPMLRKIFDKCRKNGYATLGEWAARRLN 673 (693)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 673 (693)
.+..+++.++.=.|..++|.+++...+.-+. ...-..+++.|.+..+-++...+-++.+
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~l 126 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEYL 126 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 3456677777777777777777777764433 3344557777777766666665555443
No 406
>PHA03100 ankyrin repeat protein; Provisional
Probab=51.66 E-value=3e+02 Score=28.67 Aligned_cols=148 Identities=11% Similarity=0.043 Sum_probs=61.3
Q ss_pred HHHHhhcCccHHHHHHHHHHHHHhCCCCCchh--hhHHHHH-----HhccCChhhHHHhhccCCC---CCcccHHHHHHH
Q 043637 48 LFQLCASSKAIVEARKLESNLVTFYPTPPVFL--LNRAIEC-----YGKCGNLDDARGLFDEMPE---RDGGSWNAMLGA 117 (693)
Q Consensus 48 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~-----~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 117 (693)
.+....+.|+.+ +++.+.+.|..++... ....+.. ....|..+-+.-+++.-.. ++....+.|..+
T Consensus 38 ~L~~A~~~~~~~----ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A 113 (480)
T PHA03100 38 PLYLAKEARNID----VVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYA 113 (480)
T ss_pred hhhhhhccCCHH----HHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHH
Confidence 344444555553 3444445555544322 1233344 4455566555555544322 222233344333
Q ss_pred HH-hCCChhhHHHHHHHhhhCCCCCCHhh--HHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhh--HhHHHHHhhcCC
Q 043637 118 YT-QNGFPGRTLELFLDMNHSGVSANQIT--YANVLRSSAEELELGVSKQLHGLIVKRGFCGNVIL--ESSLVDAYGKCM 192 (693)
Q Consensus 118 ~~-~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g 192 (693)
.. ..|+. ++++.+.+.|..++... -...+...+..|. .-.++.+.+.+.|..++... -.+.+...+..|
T Consensus 114 ~~~~~~~~----~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~ 187 (480)
T PHA03100 114 ISKKSNSY----SIVEYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG 187 (480)
T ss_pred HhcccChH----HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC
Confidence 32 33333 33333444444433211 1123333333341 11233444445555443221 123344455556
Q ss_pred CHHHHHHHHhccC
Q 043637 193 VMTDARRMFDDIQ 205 (693)
Q Consensus 193 ~~~~A~~~~~~~~ 205 (693)
+.+-+.-+++.-.
T Consensus 188 ~~~iv~~Ll~~ga 200 (480)
T PHA03100 188 NIDVIKFLLDNGA 200 (480)
T ss_pred CHHHHHHHHHcCC
Confidence 6555555555443
No 407
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.53 E-value=42 Score=29.74 Aligned_cols=37 Identities=14% Similarity=-0.015 Sum_probs=34.8
Q ss_pred CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCC
Q 043637 642 FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 642 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 678 (693)
..|++..+..++.++...|+.++|.+..+++..+.|.
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 5789999999999999999999999999999999993
No 408
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=51.44 E-value=28 Score=29.96 Aligned_cols=30 Identities=23% Similarity=0.229 Sum_probs=25.1
Q ss_pred HHHHHHhcCCccHHHHHHHHHhhcCCCCCcc
Q 043637 652 IFDKCRKNGYATLGEWAARRLNELNPWAPFQ 682 (693)
Q Consensus 652 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 682 (693)
.+..|.+.|.+++|.+++++..+ +|++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 46789999999999999999999 7765443
No 409
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=51.38 E-value=2.8e+02 Score=28.20 Aligned_cols=50 Identities=12% Similarity=0.032 Sum_probs=21.2
Q ss_pred HHcCChHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChHHHHHHHHHhhh
Q 043637 422 RKCGNLRSARIWFYQMSQR--RDKVSWNAVLTGYARRGQSEEAMTSFSEMQW 471 (693)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 471 (693)
...|+++.+...+...... ....+..++++...+.|++++|..+-+.|..
T Consensus 334 ~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~ 385 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLS 385 (831)
T ss_pred HHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 3444555444433332221 2223344444444444555555544444433
No 410
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=51.30 E-value=1.3e+02 Score=24.36 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHH
Q 043637 561 EALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDS 603 (693)
Q Consensus 561 ~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 603 (693)
.+.++|+.|...|+--.. .-|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 555666666665554432 4455555555566666666666543
No 411
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.93 E-value=2.3e+02 Score=27.03 Aligned_cols=88 Identities=16% Similarity=0.320 Sum_probs=62.4
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH----------hcCChHH
Q 043637 563 LEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYC----------RYGYMKE 632 (693)
Q Consensus 563 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~----------~~g~~~~ 632 (693)
.++++.+.+.++.|.-.++.-+.-.+.+.=.+.+.+.+|+.+..+ +.-|..|+..|| -.|++.-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 578888999999999888777777777888889999999998753 223555555554 3688888
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHH
Q 043637 633 LEDFVNRMPFNPTVPMLRKIFDKCR 657 (693)
Q Consensus 633 A~~~~~~~~~~~~~~~~~~l~~~~~ 657 (693)
-+++++.-. +.|.+..-.+++.++
T Consensus 337 nmkLLQ~yp-~tdi~~~l~~A~~Lr 360 (370)
T KOG4567|consen 337 NMKLLQNYP-TTDISKMLAVADSLR 360 (370)
T ss_pred HHHHHhcCC-CCCHHHHHHHHHHHH
Confidence 888887765 344444434444443
No 412
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=50.83 E-value=52 Score=30.61 Aligned_cols=53 Identities=13% Similarity=0.113 Sum_probs=26.6
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCC----CChhHHHHHHHHHHhcCChHHHHHH
Q 043637 584 ILLACIHEGNVKLALQFFDSMRCKYGII----PQLEHYECMIKLYCRYGYMKELEDF 636 (693)
Q Consensus 584 l~~~~~~~g~~~~A~~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~g~~~~A~~~ 636 (693)
+..-|...|++++|.++|+.+...+.-+ +...+...+..++.+.|+.++.+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3456666666666666666664322211 1223334444555555655555444
No 413
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.30 E-value=3.3e+02 Score=28.64 Aligned_cols=91 Identities=11% Similarity=0.137 Sum_probs=54.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCC--ChHHHHHHHHHHh-ccCcHHHHHHHHHHhHH--hcCCCCChhHHHHHHHH
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGIKP--DHITFHGILLACI-HEGNVKLALQFFDSMRC--KYGIIPQLEHYECMIKL 623 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~--~~~~~p~~~~~~~l~~~ 623 (693)
.+..+.+.|-+..|.++.+-+.. +.| |+.....+|+.|+ +..+|.-.+++++.... +...-|+...-.+|+..
T Consensus 348 ~m~~l~~RGC~rTA~E~cKllls--Ldp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f 425 (665)
T KOG2422|consen 348 YMQSLAQRGCWRTALEWCKLLLS--LDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARF 425 (665)
T ss_pred HHHHHHhcCChHHHHHHHHHHhh--cCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHH
Confidence 35566777778888888777777 455 4566666665553 55667777777666532 12334555544555666
Q ss_pred HHhcCC---hHHHHHHHHhCC
Q 043637 624 YCRYGY---MKELEDFVNRMP 641 (693)
Q Consensus 624 ~~~~g~---~~~A~~~~~~~~ 641 (693)
|.+... .+.|...+.++.
T Consensus 426 ~l~~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 426 FLRKNEEDDRQSALNALLQAL 446 (665)
T ss_pred HHhcCChhhHHHHHHHHHHHH
Confidence 665544 344555555443
No 414
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=49.57 E-value=2.4e+02 Score=27.24 Aligned_cols=118 Identities=11% Similarity=-0.052 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHh------ccCcHHHHHHHHHHhHHhcCCCCChhH-HHHHHHHHHhcCChH
Q 043637 559 GREALEVFGLMKKEGIKPDHITFHGILLACI------HEGNVKLALQFFDSMRCKYGIIPQLEH-YECMIKLYCRYGYMK 631 (693)
Q Consensus 559 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~------~~g~~~~A~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~ 631 (693)
++++..++++....+. |.+......|.++- ..-+|.....+++.+. ...|++.+ .|. .-+..+.--.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPvV~LNR-AVAla~~~Gp~ 346 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPVVTLNR-AVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCeEeehH-HHHHHHhhhHH
Confidence 5677788888777764 77777777775542 2346777666776665 33444332 222 22333444455
Q ss_pred HHHHHHHhCCCC----CCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCc
Q 043637 632 ELEDFVNRMPFN----PTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPF 681 (693)
Q Consensus 632 ~A~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 681 (693)
.++...+.+... +....+..-.+.+.+.|..++|...|++.+.+.++...
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 566666655432 33445555667788889999999999999888875543
No 415
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=49.42 E-value=2.6e+02 Score=27.28 Aligned_cols=113 Identities=16% Similarity=0.142 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh---cCChHHHHH
Q 043637 560 REALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCR---YGYMKELED 635 (693)
Q Consensus 560 ~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~ 635 (693)
+.-+.++++.++. .|+ ......++..+.+..+.+...+-++++..+ .+-+...|...+..... .-.+++...
T Consensus 48 E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 48 ERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 4445666666664 443 344555566666666666666777777642 22345555555444322 123334444
Q ss_pred HHHhC-------CCC-----CCH-----HhHH---HHHHHHHhcCCccHHHHHHHHHhhcC
Q 043637 636 FVNRM-------PFN-----PTV-----PMLR---KIFDKCRKNGYATLGEWAARRLNELN 676 (693)
Q Consensus 636 ~~~~~-------~~~-----~~~-----~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~ 676 (693)
+|.+. ... ++. .... .+...+...|-.+.|..+++.+++++
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 43322 111 111 1111 22233346788888888888888854
No 416
>PHA02875 ankyrin repeat protein; Provisional
Probab=49.37 E-value=3e+02 Score=27.98 Aligned_cols=78 Identities=12% Similarity=-0.032 Sum_probs=38.3
Q ss_pred HhCCChhhHHHHHHHhhhCCCCCCHhh--HHHHHHHhhccCChHHHHHHHHHHHHhCCCCchh--hHhHHHHHhhcCCCH
Q 043637 119 TQNGFPGRTLELFLDMNHSGVSANQIT--YANVLRSSAEELELGVSKQLHGLIVKRGFCGNVI--LESSLVDAYGKCMVM 194 (693)
Q Consensus 119 ~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~g~~ 194 (693)
+..|+.+ +++.+.+.|..|+... -...+..++..|+.+. .+.+.+.|..|+.. .....+...++.|+.
T Consensus 10 ~~~g~~~----iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELD----IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 4445543 3444445666665432 2334444455566543 34444555544322 112334455566777
Q ss_pred HHHHHHHhcc
Q 043637 195 TDARRMFDDI 204 (693)
Q Consensus 195 ~~A~~~~~~~ 204 (693)
+.+..+++.-
T Consensus 82 ~~v~~Ll~~~ 91 (413)
T PHA02875 82 KAVEELLDLG 91 (413)
T ss_pred HHHHHHHHcC
Confidence 7766666543
No 417
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=49.06 E-value=1.6e+02 Score=28.43 Aligned_cols=57 Identities=12% Similarity=0.104 Sum_probs=32.0
Q ss_pred CCCHHHHH--HHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCh-HHHHHHHH-HHhccCcHHH
Q 043637 540 SLDVIICN--SMILGFCHNERGREALEVFGLMKK-----EGIKPDH-ITFHGILL-ACIHEGNVKL 596 (693)
Q Consensus 540 ~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~-~~~~~l~~-~~~~~g~~~~ 596 (693)
.|+.+.|. .....+...|+..++.+.+++..+ .|++|+. ..|..+-. -|-..|++..
T Consensus 110 e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 110 EPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFAS 175 (380)
T ss_pred cchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHH
Confidence 34444332 344555567777777777777766 5677755 34555543 3333444443
No 418
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=48.34 E-value=22 Score=28.72 Aligned_cols=34 Identities=15% Similarity=0.294 Sum_probs=23.5
Q ss_pred HHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHh
Q 043637 118 YTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSS 153 (693)
Q Consensus 118 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 153 (693)
+...|.-.+|..+|.+|.+.|-+|| .|+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 3445666778888888888888887 356665543
No 419
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=47.80 E-value=42 Score=23.01 Aligned_cols=28 Identities=7% Similarity=0.236 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
..-..+|.++...|++++|.++++++..
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344455566666666666666655543
No 420
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=47.71 E-value=3.1e+02 Score=27.68 Aligned_cols=340 Identities=11% Similarity=-0.002 Sum_probs=0.0
Q ss_pred chHHHHHhhhcCCCCCCCCchhhhHHHhhhccCCCCCChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHH
Q 043637 4 NAATILKNILSKSSPKPTPSKTLTKTISGHLKSDEPVSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRA 83 (693)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 83 (693)
+-+.|..--.-+=.|.|.....+.+.|-...+.++.-.-.-.+.++.-|...|+..+|-+..+++... ...+..+-.++
T Consensus 176 kg~qV~~~aeksylsap~hae~ve~~wGg~~n~t~EEvK~kIn~~l~eyv~~getrea~rciR~L~vs-ffhhe~vkral 254 (645)
T KOG0403|consen 176 KGFQVINTAEKSYLSAPHHAELVELFWGGETNATVEEVKNKINGNLIEYVEIGETREACRCIRELGVS-FFHHEGVKRAL 254 (645)
T ss_pred cchhHHHHHHhhccCCCchhhHHHhhhCCCccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhCCC-chhhHHHHHHH
Q ss_pred HHHHhccCChhhHHHhhccCCCCCcccHHHHHHHHHhCC--------ChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhc
Q 043637 84 IECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNG--------FPGRTLELFLDMNHSGVSANQITYANVLRSSAE 155 (693)
Q Consensus 84 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 155 (693)
+.+....-.--..+.++.+-.+.+..+-+.+..++.+.+ +...|...|+......+.-+-.--+++-.....
T Consensus 255 v~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~ 334 (645)
T KOG0403|consen 255 VDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRKGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVL 334 (645)
T ss_pred HHHHhhhhcccceeccchhhhhhcchhhhccccCchhhccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccC
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCC---CcccHHHHHHHHHhcCCchHHHHHH
Q 043637 156 ELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNK---NAVSWNVIVRRYLVAGNGKEAVVMF 232 (693)
Q Consensus 156 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~ 232 (693)
.|+.+....+-+.. ..+|+-|...|+..+..+.++.+--| ..+.-..+--++-+.+...+.-.+|
T Consensus 335 ~g~~e~~r~Fkk~~------------~~IIqEYFlsgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvl 402 (645)
T KOG0403|consen 335 PGDSENLRAFKKDL------------TPIIQEYFLSGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVL 402 (645)
T ss_pred CCcchHHHHHHHhh------------HHHHHHHHhcCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHH
Q ss_pred HHHHHCCCCCCHHhHHHHHHHhcCCC----CcchhHHHHHHHHHhcCCCchH----------------------------
Q 043637 233 FKMLREDIRPLNFTFANALFACSFLS----SPYEGMQIHGVIIKIDFEGDDV---------------------------- 280 (693)
Q Consensus 233 ~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~---------------------------- 280 (693)
-.-.--.+-++...-+.....+-... +...|-+.+.......+..++-
T Consensus 403 lS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsL 482 (645)
T KOG0403|consen 403 LSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSL 482 (645)
T ss_pred HHHhhcccCCHHHHHHHHHHHHhcchhhhccccccHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHH
Q ss_pred ----------------------------HHHHHHHHHHHcCChhHHHhhhcCCCCC---CchhHHHHHHHHHhcCCHHHH
Q 043637 281 ----------------------------VLGSLTEMYVKCGRLEDARGLLDQPDER---NIISWTSIVSGYAISGRIREA 329 (693)
Q Consensus 281 ----------------------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A 329 (693)
-...|+.-|.-.|++.+|.+.++++.-| ....+.+++.+.-+.|+-..-
T Consensus 483 lsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ 562 (645)
T KOG0403|consen 483 LSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMI 562 (645)
T ss_pred HHHhhcccchhheecCCCCcchHHHHHHHHHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHH
Q ss_pred HHHHhhCCCCCcccHHHHHHHHHhCCC
Q 043637 330 RELFNEMPERNVISWNAMLAGYTRSLL 356 (693)
Q Consensus 330 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ 356 (693)
+.+++..-.....|-+.|-.+|.+..+
T Consensus 563 ldLLk~cf~sglIT~nQMtkGf~RV~d 589 (645)
T KOG0403|consen 563 LDLLKECFKSGLITTNQMTKGFERVYD 589 (645)
T ss_pred HHHHHHHHhcCceeHHHhhhhhhhhhc
No 421
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=47.56 E-value=25 Score=20.22 Aligned_cols=26 Identities=8% Similarity=-0.077 Sum_probs=19.5
Q ss_pred CccHHHHHHHHHhhcCCCCCcchhhhh
Q 043637 661 YATLGEWAARRLNELNPWAPFQFKITT 687 (693)
Q Consensus 661 ~~~~A~~~~~~~~~~~p~~~~~~~~l~ 687 (693)
+++.|..+|++.+...| ++.++...|
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 46788999999998887 566665544
No 422
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=47.13 E-value=4.1e+02 Score=28.89 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=16.5
Q ss_pred ccHHHHHHHHHh---CCCHHHHHHHHHHHHH
Q 043637 342 ISWNAMLAGYTR---SLLWKEALDFVFLMRK 369 (693)
Q Consensus 342 ~~~~~l~~~~~~---~~~~~~a~~~~~~m~~ 369 (693)
..+..||..|.+ ..+..+|+++|--+..
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 456667777765 3567777777765544
No 423
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.04 E-value=3.6e+02 Score=28.14 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=15.2
Q ss_pred hCCChhhHHHHHHHhhhCCCCCCHh
Q 043637 120 QNGFPGRTLELFLDMNHSGVSANQI 144 (693)
Q Consensus 120 ~~~~~~~a~~~~~~m~~~g~~~~~~ 144 (693)
..++++.|+.++..|...|..|...
T Consensus 255 ~~~d~~~Al~~l~~ll~~Gedp~~i 279 (472)
T PRK14962 255 FNGDVKRVFTVLDDVYYSGKDYEVL 279 (472)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 4466666666666666666555443
No 424
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=46.96 E-value=1.2e+02 Score=22.82 Aligned_cols=53 Identities=13% Similarity=0.024 Sum_probs=28.6
Q ss_pred HhCCChHHHHHHHHHHHH----CCCCCC----hHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 554 CHNERGREALEVFGLMKK----EGIKPD----HITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 554 ~~~g~~~~A~~~~~~m~~----~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
.+.|++..|.+.+.+..+ .+..+. ......+.......|++++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456777777555555443 221111 12222233555666777777777777764
No 425
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=46.83 E-value=1.4e+02 Score=23.29 Aligned_cols=87 Identities=13% Similarity=0.169 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhh
Q 043637 392 IKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQW 471 (693)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 471 (693)
.++|..+.+.+...+. ....+.-.-+..+.+.|++++| -.+-.....||...|-.|- -.+.|-.+++...+.++..
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A-Ll~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA-LLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLAS 97 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH-HHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH-HHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 4455555555554442 2222333344556788888888 4444444567777776653 4467888888888888877
Q ss_pred CCCCCHHHHHH
Q 043637 472 ETRPSKFTFET 482 (693)
Q Consensus 472 ~~~p~~~~~~~ 482 (693)
+|.|....|..
T Consensus 98 ~g~~~~q~Fa~ 108 (116)
T PF09477_consen 98 SGSPELQAFAA 108 (116)
T ss_dssp -SSHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 77666666543
No 426
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=45.71 E-value=62 Score=33.52 Aligned_cols=120 Identities=14% Similarity=0.052 Sum_probs=66.9
Q ss_pred HHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccC----CCCCcccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCH
Q 043637 68 LVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEM----PERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQ 143 (693)
Q Consensus 68 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 143 (693)
+.++-.-|--.+.|...--+...|+...|...+... +...-+..-.|.+.+.+.|-..+|-.++.+..... .-..
T Consensus 598 ~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sep 676 (886)
T KOG4507|consen 598 AINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEP 676 (886)
T ss_pred HhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCc
Confidence 333333344444443333333456666666655443 22233444556666667777777777766655433 3334
Q ss_pred hhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhh
Q 043637 144 ITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYG 189 (693)
Q Consensus 144 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 189 (693)
-++..+.+++....+++.|.+.|++..+.. +.+...-+.|...-|
T Consensus 677 l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 677 LTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred hHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 566666777777777777777777776654 334555566555444
No 427
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=44.87 E-value=2.9e+02 Score=26.40 Aligned_cols=183 Identities=9% Similarity=-0.096 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHhhCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHh----CCChHHHHH
Q 043637 491 SSLEQGKQIHCFVIRNCYE-INVVCRGALVEVYTKCCCLEYAIRVFKESS-SLDVIICNSMILGFCH----NERGREALE 564 (693)
Q Consensus 491 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~g~~~~A~~ 564 (693)
+++..+...+......+.. -....-...........+..+|...+.... .........|...|.. ..+..+|..
T Consensus 55 ~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~ 134 (292)
T COG0790 55 PDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALK 134 (292)
T ss_pred ccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHH
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhcc-----CcHH--HHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHHH
Q 043637 565 VFGLMKKEGIKPDHITFHGILLACIHE-----GNVK--LALQFFDSMRCKYGIIPQLEHYECMIKLYCR----YGYMKEL 633 (693)
Q Consensus 565 ~~~~m~~~g~~p~~~~~~~l~~~~~~~-----g~~~--~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 633 (693)
.+++..+.|..+-..+...+...|... -.++ .|...+.++... + +......+...|.. ..+.++|
T Consensus 135 ~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~-~---~~~a~~~lg~~y~~G~Gv~~d~~~A 210 (292)
T COG0790 135 YYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL-G---NPDAQLLLGRMYEKGLGVPRDLKKA 210 (292)
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh-c---CHHHHHHHHHHHHcCCCCCcCHHHH
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcC---------------CccHHHHHHHHHhhcCCC
Q 043637 634 EDFVNRMPFNPTVPMLRKIFDKCRKNG---------------YATLGEWAARRLNELNPW 678 (693)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~p~ 678 (693)
..+|++.....+......+. .+...| +...|...+...-+..+.
T Consensus 211 ~~wy~~Aa~~g~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 211 FRWYKKAAEQGDGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHHHHHHHCCCHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
No 428
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=44.70 E-value=3.7e+02 Score=27.63 Aligned_cols=101 Identities=10% Similarity=0.028 Sum_probs=57.5
Q ss_pred HHhcCChHHHHHHHHHhhhC---C---CCCH---HHHHHHHHHhcccCChHHHHHHHHHHHH-------hCCCcch----
Q 043637 453 YARRGQSEEAMTSFSEMQWE---T---RPSK---FTFETLLAACANISSLEQGKQIHCFVIR-------NCYEINV---- 512 (693)
Q Consensus 453 ~~~~~~~~~a~~~~~~~~~~---~---~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~---- 512 (693)
+.-.|++.+|.+++...--. | .|.- ..++.+...+.+.|.+..+..+|.+..+ .|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 44567778887777664221 1 1111 1124444455566666666666665553 3444421
Q ss_pred -------hHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHH
Q 043637 513 -------VCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFC 554 (693)
Q Consensus 513 -------~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 554 (693)
.+||. .-.|...|+.-.|.+.|.+.. ..++..|-.|..+|.
T Consensus 330 s~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 330 SQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred hcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 12222 224566788888888887765 567778888887774
No 429
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=44.38 E-value=22 Score=35.71 Aligned_cols=95 Identities=8% Similarity=0.029 Sum_probs=67.8
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhH-HHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HHhHHHHHHHHHhcCCc
Q 043637 586 LACIHEGNVKLALQFFDSMRCKYGIIPQLEH-YECMIKLYCRYGYMKELEDFVNRMP-FNPT-VPMLRKIFDKCRKNGYA 662 (693)
Q Consensus 586 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~ 662 (693)
......++++.|..++.++++ +.||-.. |..-..++.+.+++..|+.=+.++. ..|. ...|-.-+.+|-..+.+
T Consensus 12 n~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 455677899999999999984 5676444 4444578999999999987666554 2222 22332334456667789
Q ss_pred cHHHHHHHHHhhcCCCCCcch
Q 043637 663 TLGEWAARRLNELNPWAPFQF 683 (693)
Q Consensus 663 ~~A~~~~~~~~~~~p~~~~~~ 683 (693)
.+|...++....+.|+++..-
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDAT 109 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHH
Confidence 999999999999999887543
No 430
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=44.10 E-value=85 Score=20.12 Aligned_cols=33 Identities=12% Similarity=-0.019 Sum_probs=19.0
Q ss_pred HhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 043637 220 LVAGNGKEAVVMFFKMLREDIRPLNFTFANALF 252 (693)
Q Consensus 220 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 252 (693)
.+.|-..++..++++|.+.|+..+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555566666666666666655555554443
No 431
>PF13934 ELYS: Nuclear pore complex assembly
Probab=44.00 E-value=2.6e+02 Score=25.61 Aligned_cols=20 Identities=10% Similarity=0.140 Sum_probs=8.8
Q ss_pred HHHHHHhCCChHHHHHHHHH
Q 043637 549 MILGFCHNERGREALEVFGL 568 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~ 568 (693)
++.++...|+.+.|+.+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 33344444444444444443
No 432
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.57 E-value=2.6e+02 Score=25.56 Aligned_cols=16 Identities=13% Similarity=0.349 Sum_probs=7.6
Q ss_pred CCChHHHHHHHHHHHH
Q 043637 556 NERGREALEVFGLMKK 571 (693)
Q Consensus 556 ~g~~~~A~~~~~~m~~ 571 (693)
.+++.+|+.+|++...
T Consensus 167 leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555554444
No 433
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=43.38 E-value=5.7e+02 Score=29.48 Aligned_cols=252 Identities=11% Similarity=0.005 Sum_probs=134.1
Q ss_pred CCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHH
Q 043637 373 DIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTG 452 (693)
Q Consensus 373 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~ 452 (693)
.+|...-...+..+...+..+....+. ...+ .++..+-...+.++.+.+........+...+..+|...-...+..
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~~~~L~-~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~a 707 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGFGPALV-AALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDV 707 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhHHHHHH-HHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHH
Confidence 455555555556655555433222222 3322 234444444444444443221111344444555555555555555
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHH-H
Q 043637 453 YARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEY-A 531 (693)
Q Consensus 453 ~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A 531 (693)
+...+..+ ...+...+ ..++...-...+.++...+..+. + ...--+++..+-...+.++...+..+. +
T Consensus 708 L~~~~~~~-~~~l~~~L---~D~d~~VR~~Av~aL~~~~~~~~---l----~~~l~D~~~~VR~~aa~aL~~~~~~~~~~ 776 (897)
T PRK13800 708 LRALRAGD-AALFAAAL---GDPDHRVRIEAVRALVSVDDVES---V----AGAATDENREVRIAVAKGLATLGAGGAPA 776 (897)
T ss_pred HHhhccCC-HHHHHHHh---cCCCHHHHHHHHHHHhcccCcHH---H----HHHhcCCCHHHHHHHHHHHHHhccccchh
Confidence 55433211 11122211 14444444455555555544322 1 122234566666777777777665442 3
Q ss_pred HHHHhcC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 043637 532 IRVFKES-SSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGI 610 (693)
Q Consensus 532 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 610 (693)
...+..+ ..+|...-...+.++...|..+.+...+..+.+ .+|...-...+.++...+. +++...+..+..
T Consensus 777 ~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---- 848 (897)
T PRK13800 777 GDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEALT---- 848 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHHhc----
Confidence 3434443 467888888899999999887665555555554 3565566667777777765 456666666654
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHH
Q 043637 611 IPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVP 647 (693)
Q Consensus 611 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 647 (693)
.|+..+-...+.++.+.+....+...+......++..
T Consensus 849 D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~ 885 (897)
T PRK13800 849 DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDAD 885 (897)
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHH
Confidence 3666666777777777543446666666665444444
No 434
>PF15469 Sec5: Exocyst complex component Sec5
Probab=43.31 E-value=2.3e+02 Score=24.80 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=30.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 548 SMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 548 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
.++..-.+..+...++.++++..- ....-.-+.-|...|+++.+..-+.++..
T Consensus 62 pll~~~~k~~~l~~~l~~l~r~~f------lF~LP~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 62 PLLERREKADKLRNALEFLQRNRF------LFNLPSNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHccHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 333333344445555555554433 22233456677788888888888888765
No 435
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=42.98 E-value=1.6e+02 Score=29.31 Aligned_cols=55 Identities=13% Similarity=0.057 Sum_probs=27.5
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCC---CCCH-HHHHHHHHHhcccCChHHHHHHHHHHH
Q 043637 449 VLTGYARRGQSEEAMTSFSEMQWET---RPSK-FTFETLLAACANISSLEQGKQIHCFVI 504 (693)
Q Consensus 449 l~~~~~~~~~~~~a~~~~~~~~~~~---~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 504 (693)
|++...-.|++....+.++.|.++- .|.- .| ..+.-+|...+++.+|.+.|-.+.
T Consensus 241 LlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 241 LLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHHH
Confidence 4444445566555556665554332 2221 22 344455555566666666555443
No 436
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=42.93 E-value=2.6e+02 Score=29.16 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=26.9
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHH
Q 043637 619 CMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGE 666 (693)
Q Consensus 619 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 666 (693)
.+...+.|.+++++|..+--.+. +...+..+-......|+.+.|.
T Consensus 499 RfFhhLLR~~rfekAFlLAvdi~---~~DLFmdlh~~A~~~ge~~La~ 543 (545)
T PF11768_consen 499 RFFHHLLRYQRFEKAFLLAVDIG---DRDLFMDLHYLAKDKGELALAE 543 (545)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhhhh
Confidence 34455667888888877766664 3334444444445566666654
No 437
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=41.85 E-value=1.7e+02 Score=29.39 Aligned_cols=57 Identities=9% Similarity=0.084 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC-----------CCcccHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043637 312 SWTSIVSGYAISGRIREARELFNEMPE-----------RNVISWNAMLAGYTRSLLWKEALDFVFLMR 368 (693)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 368 (693)
+...|++.++-.|++..|+++++.+.- -.+.++..+.-+|.-.+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567777778888888888776642 244567778888888999999999887764
No 438
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=41.63 E-value=33 Score=27.77 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=25.1
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 043637 553 FCHNERGREALEVFGLMKKEGIKPDHITFHGILLAC 588 (693)
Q Consensus 553 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 588 (693)
....|.-.+|-.+|++|++.|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456667888999999999988874 66666543
No 439
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=41.43 E-value=2e+02 Score=23.64 Aligned_cols=65 Identities=8% Similarity=0.018 Sum_probs=27.3
Q ss_pred CChHHHHHHHHHHhccCc---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 576 PDHITFHGILLACIHEGN---VKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 576 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
++..+-..+.+++.++.+ ..+.+.+++++.++..-.-.......|.-++.|.|++++++++++.+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 334444444455544433 23344444444421011111222333444555555555555555444
No 440
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=41.37 E-value=2.8e+02 Score=27.90 Aligned_cols=19 Identities=16% Similarity=0.038 Sum_probs=11.1
Q ss_pred HHhcCChHHHHHHHHHhhh
Q 043637 453 YARRGQSEEAMTSFSEMQW 471 (693)
Q Consensus 453 ~~~~~~~~~a~~~~~~~~~ 471 (693)
+.+.+++..|.++|+.+..
T Consensus 141 l~n~~~y~aA~~~l~~l~~ 159 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLR 159 (379)
T ss_pred HHhcCCHHHHHHHHHHHHH
Confidence 3455666666666666544
No 441
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=41.02 E-value=43 Score=22.94 Aligned_cols=27 Identities=22% Similarity=0.149 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKK 571 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 571 (693)
---.++.++...|++++|.++++++.+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344567778888888888887777655
No 442
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.83 E-value=2.3e+02 Score=29.62 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=66.2
Q ss_pred CCCChhHHHHH---HHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHh-ccCChhhHHHhhccCC------CCC
Q 043637 38 EPVSYSLYAHL---FQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYG-KCGNLDDARGLFDEMP------ERD 107 (693)
Q Consensus 38 ~~~~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~------~~~ 107 (693)
++-|...|..| ++.+.+.|-++.|.++...+.+..+.-|+.....+|+.|+ ++.++.=.+++++... +-.
T Consensus 335 ~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~P 414 (665)
T KOG2422|consen 335 YPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLP 414 (665)
T ss_pred chhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcC
Confidence 34455555544 5567889999999999999999998778888888999888 6677777777776552 334
Q ss_pred cccHHHHH-HHHHhCCC---hhhHHHHHHHhhh
Q 043637 108 GGSWNAML-GAYTQNGF---PGRTLELFLDMNH 136 (693)
Q Consensus 108 ~~~~~~li-~~~~~~~~---~~~a~~~~~~m~~ 136 (693)
...|+..+ ..|..... -+.|...+.+..+
T Consensus 415 N~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 415 NFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred CchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 45566544 44444443 2344555544443
No 443
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.69 E-value=46 Score=31.45 Aligned_cols=37 Identities=16% Similarity=0.315 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHH
Q 043637 111 WNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYA 147 (693)
Q Consensus 111 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 147 (693)
|+..|....+.|++++|+.++++..+.|+.--..+|.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 5566666677777777777777776666554444443
No 444
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.68 E-value=3.2e+02 Score=28.38 Aligned_cols=98 Identities=8% Similarity=-0.059 Sum_probs=52.2
Q ss_pred HHHHHHHHHH-HhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCC--CCcccHHHHHHHHHhCCChhhHHHHHHHhhh
Q 043637 60 EARKLESNLV-TFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPE--RDGGSWNAMLGAYTQNGFPGRTLELFLDMNH 136 (693)
Q Consensus 60 ~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 136 (693)
+..+.++.+. +.|+..+......+++. ..|+...|+.+++.+.. .+..++..+ .+++
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~~~~it~~~V-------------~~~l----- 243 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFTDSKLTGVKI-------------RKMI----- 243 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhCCCCcCHHHH-------------HHHh-----
Confidence 3444444443 34665566655544432 45888888888765321 011112211 1111
Q ss_pred CCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchh
Q 043637 137 SGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVI 179 (693)
Q Consensus 137 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 179 (693)
|+ .+...+..++.++...+....+..+++.+.+.|..|...
T Consensus 244 -g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 244 -GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred -CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 32 355566666666655555567778888888877666543
No 445
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=39.68 E-value=1.8e+02 Score=26.63 Aligned_cols=107 Identities=14% Similarity=0.039 Sum_probs=54.4
Q ss_pred HHhCCChHHHHHHHHHHHHCCCC-CCh--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 043637 553 FCHNERGREALEVFGLMKKEGIK-PDH--ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGY 629 (693)
Q Consensus 553 ~~~~g~~~~A~~~~~~m~~~g~~-p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 629 (693)
+...|+++.|+++.+-+++.|+. |+. .++-+++ . |+....-.... +.|.+.++.....+...-...
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v----a----eev~~~A~~~~-~ag~~~e~~~~~~~~~l~~~~-- 161 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFV----A----EEVANAALKAA-SAGESVEPYFLRVFLDLTTEW-- 161 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHH----H----HHHHHHHHHHH-HcCCCCChHHHHHHHHHHhcC--
Confidence 46778899999999988888754 332 1222221 1 11111111122 124444444333322211111
Q ss_pred hHHHHHHHHhCCCCCCHHhHHHHHHHHH---------hcCCccHHHHHHHHHhhcCCCC
Q 043637 630 MKELEDFVNRMPFNPTVPMLRKIFDKCR---------KNGYATLGEWAARRLNELNPWA 679 (693)
Q Consensus 630 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~p~~ 679 (693)
.|..+.....+...+..+. ..++...|...++++++++|.-
T Consensus 162 ---------dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 162 ---------DMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred ---------CCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 1222222234555555553 3346678999999999999853
No 446
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.48 E-value=55 Score=30.93 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHH
Q 043637 212 WNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFA 248 (693)
Q Consensus 212 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 248 (693)
|+..|....+.||.++|+.++++.++.|+.--..+|.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 6788888888888888888888888888765444443
No 447
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.45 E-value=4.1e+02 Score=26.62 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 043637 515 RGALVEVYTKCCCLEYAIRVFKESS------SLDVIICNSMILGFCHNERGREALEVFGLMKK 571 (693)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 571 (693)
+.-+.+-|..+|+++.|++.|.+.. +.-+..|-.+|..-.-.|+|........+...
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3445555666666666666665533 12233455555555556666655555554444
No 448
>PRK02287 hypothetical protein; Provisional
Probab=37.76 E-value=1.5e+02 Score=25.39 Aligned_cols=59 Identities=8% Similarity=0.121 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 043637 616 HYECMIKLYCRYGYMKELEDFVNRMPFNPT-VPMLRKIFDKCRKNGYATLGEWAARRLNE 674 (693)
Q Consensus 616 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 674 (693)
+..+++.++.=.|..++|.++++....... ...-..+++.|....+-++..++-+..++
T Consensus 109 ~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~~ 168 (171)
T PRK02287 109 SVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYLG 168 (171)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 456666677777777777777776664333 33444567777766666666665555443
No 449
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=36.40 E-value=1.9e+02 Score=21.84 Aligned_cols=54 Identities=13% Similarity=0.049 Sum_probs=32.0
Q ss_pred HhccCcHHHHHHHHHHhHHhc--CCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 588 CIHEGNVKLALQFFDSMRCKY--GIIPQ-----LEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~~~--~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
..+.|++..|.+.+.+...-. ...+. ....-.+.......|++++|...+++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456788888866666554211 11111 1122234556677889998888888764
No 450
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.52 E-value=3.1e+02 Score=25.53 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=31.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHhh----hCC--CCCHHHHHHHHHHhcccCChHHHHHH
Q 043637 448 AVLTGYARRGQSEEAMTSFSEMQ----WET--RPSKFTFETLLAACANISSLEQGKQI 499 (693)
Q Consensus 448 ~l~~~~~~~~~~~~a~~~~~~~~----~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~ 499 (693)
.+...|.+.|++++|.++|+.+. .+| .+...+...+..+....|+.+....+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566777888888888887762 233 44444555555566666666555443
No 451
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=34.69 E-value=4.4e+02 Score=25.59 Aligned_cols=186 Identities=10% Similarity=-0.025 Sum_probs=0.0
Q ss_pred HHHHhccC--ChhhHHHhhccC--CCCCcccHHHHHHHHHhCC-----ChhhHHHHHHH---------hhhCCCCCC--H
Q 043637 84 IECYGKCG--NLDDARGLFDEM--PERDGGSWNAMLGAYTQNG-----FPGRTLELFLD---------MNHSGVSAN--Q 143 (693)
Q Consensus 84 ~~~~~~~g--~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~---------m~~~g~~~~--~ 143 (693)
+..+++.| .+..+++++..+ .+++...|..++..+..-. ........|+. +.+.|..+. .
T Consensus 45 ~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 124 (324)
T PF11838_consen 45 LFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGE 124 (324)
T ss_dssp HHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--S
T ss_pred HHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccc
Q ss_pred hhHHHHHHHh-hccCC-----hHHHHHHHHHHHHhCC----CCchhhHhHHHHHhhcCCCHHHHHHHHhccCC-CCcccH
Q 043637 144 ITYANVLRSS-AEELE-----LGVSKQLHGLIVKRGF----CGNVILESSLVDAYGKCMVMTDARRMFDDIQN-KNAVSW 212 (693)
Q Consensus 144 ~~~~~ll~~~-~~~~~-----~~~a~~~~~~~~~~g~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~ 212 (693)
......++.. ..... .+.|.+.++.....+. ..++.....++....+.|+.+.-..+++.... ++..-.
T Consensus 125 ~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k 204 (324)
T PF11838_consen 125 DHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEK 204 (324)
T ss_dssp CHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHH
T ss_pred cHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHH
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHh-cCCCCcchhHHHHHH
Q 043637 213 NVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFAC-SFLSSPYEGMQIHGV 269 (693)
Q Consensus 213 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~ 269 (693)
..++.+++...+.+...++++.....+..++......+.... ......+.+...+..
T Consensus 205 ~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 205 RRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 452
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=34.53 E-value=2.7e+02 Score=23.22 Aligned_cols=65 Identities=5% Similarity=-0.103 Sum_probs=44.0
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChh
Q 043637 231 MFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLE 296 (693)
Q Consensus 231 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 296 (693)
+.+.+++.|++++..- ..+++.+...++.-.|..+++.+.+.+...+..|.-..++.+...|-+.
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 4455666777666543 3455666666666788888888888877777776666677777777544
No 453
>PRK09462 fur ferric uptake regulator; Provisional
Probab=34.00 E-value=2.8e+02 Score=23.18 Aligned_cols=62 Identities=6% Similarity=-0.028 Sum_probs=39.5
Q ss_pred HHHHCCCCCCHHhHHHHHHHhcC-CCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChh
Q 043637 234 KMLREDIRPLNFTFANALFACSF-LSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLE 296 (693)
Q Consensus 234 ~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 296 (693)
.+...|++++..-.. ++..+.. .+..-.|.++++.+.+.+...+..|.-..++.+...|-+.
T Consensus 7 ~l~~~glr~T~qR~~-Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 7 ALKKAGLKVTLPRLK-ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 345566666554332 3333333 3456678888888888877777777666777777777654
No 454
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=33.73 E-value=2.5e+02 Score=29.32 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCC--CCHHHHHHHHHHhcccCChHHHHHHHHHHHH
Q 043637 447 NAVLTGYARRGQSEEAMTSFSEMQWETR--PSKFTFETLLAACANISSLEQGKQIHCFVIR 505 (693)
Q Consensus 447 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 505 (693)
..++.-|.+.+++++|..++..|..... ---.+.+.+.+.+.+..--++.+..++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 3466677788888888888887765532 1122333444444444434444444444444
No 455
>KOG3154 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.36 E-value=1.4e+02 Score=26.38 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=25.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 043637 580 TFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELED 635 (693)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 635 (693)
...+|..+++-.|..++|..++.... +|..- ...-..|+..|.++++.++..+
T Consensus 149 CvEAlaA~l~I~G~~e~A~~lL~~F~--wG~~F-l~lN~~lLd~Ya~C~~s~ev~~ 201 (263)
T KOG3154|consen 149 CVEALAACLYICGFPEEARELLDKFK--WGHAF-LELNKDLLDEYAKCASSAEVVE 201 (263)
T ss_pred HHHHHHhHeeeecChhHHHHHHhcCc--chHHH-HHHhHHHHHHHHhhCCHHHHHH
Confidence 34444555555666666666665442 22211 1111235555666665555443
No 456
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=32.59 E-value=35 Score=31.96 Aligned_cols=33 Identities=18% Similarity=0.067 Sum_probs=29.1
Q ss_pred HHhcCCccHHHHHHHHHhhcCCCCCcchhhhhh
Q 043637 656 CRKNGYATLGEWAARRLNELNPWAPFQFKITTN 688 (693)
Q Consensus 656 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 688 (693)
..+.|+.++|...+++++.+.|.+|..+..+|-
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~ 158 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQ 158 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhH
Confidence 457899999999999999999999998877664
No 457
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=32.08 E-value=2.5e+02 Score=22.00 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=13.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 043637 546 CNSMILGFCHNERGREALEVFGLMKK 571 (693)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 571 (693)
|..|+.-|...|.+++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44444455555555555555554444
No 458
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=31.25 E-value=1.2e+02 Score=25.14 Aligned_cols=57 Identities=9% Similarity=-0.013 Sum_probs=29.6
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 631 KELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 631 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
+.|.++.+-|. ...............|++..|.+....++..+|+|..+-...++.|
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al 114 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADAL 114 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 34444444443 2222223344455667777777777777777777666555554443
No 459
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=31.04 E-value=6.2e+02 Score=26.25 Aligned_cols=437 Identities=10% Similarity=-0.045 Sum_probs=0.0
Q ss_pred hHHHhhhccCCCCCChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCC-hhhHHHhhccCCC
Q 043637 27 TKTISGHLKSDEPVSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGN-LDDARGLFDEMPE 105 (693)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 105 (693)
...+........+-|+..+..-+..|-+.+.+.....+|..|....+. ++.+|..-....-..+. ++.|+.+|.+-.+
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHHHHHhh
Q ss_pred CCccc-----------HHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCCh-HHHHHHHHHHHHh-
Q 043637 106 RDGGS-----------WNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELEL-GVSKQLHGLIVKR- 172 (693)
Q Consensus 106 ~~~~~-----------~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~- 172 (693)
.++.+ .+-+-....+..-.+....--+.=.+.|..........+=..+...... +.....++...+.
T Consensus 169 ~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~ 248 (568)
T KOG2396|consen 169 FNPDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQ 248 (568)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHH
Q ss_pred ---------CCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC
Q 043637 173 ---------GFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPL 243 (693)
Q Consensus 173 ---------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 243 (693)
+.+.++.++.-+ |.+.++-..+.+...+...-.+..-..+-+....+|++..+ --|+
T Consensus 249 k~i~d~~~~~~~~np~~~~~l------------aqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~--~l~t 314 (568)
T KOG2396|consen 249 KNIIDDLQSKAPDNPLLWDDL------------AQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVK--TLPT 314 (568)
T ss_pred HHHHHHHhccCCCCCccHHHH------------HHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHH--HhhH
Q ss_pred HHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhc
Q 043637 244 NFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAIS 323 (693)
Q Consensus 244 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 323 (693)
...+...|..|...-.......+...+
T Consensus 315 ~sm~e~YI~~~lE~~~~~r~~~I~h~~----------------------------------------------------- 341 (568)
T KOG2396|consen 315 ESMWECYITFCLERFTFLRGKRILHTM----------------------------------------------------- 341 (568)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHH-----------------------------------------------------
Q ss_pred CCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc--cchhhHHHHHHH
Q 043637 324 GRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGL--SEIKMGKEVHGF 401 (693)
Q Consensus 324 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~ 401 (693)
...+.+..........+......+.......++...-..+...+..-+...+-.-+...... .---....++..
T Consensus 342 ----~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~ 417 (568)
T KOG2396|consen 342 ----CVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNH 417 (568)
T ss_pred ----HHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q ss_pred HHHhCCCCchhHHHHHH-HHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHH
Q 043637 402 IHRNDYSSNIFVSNALL-DMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTF 480 (693)
Q Consensus 402 ~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~ 480 (693)
+...-..+....+++.. ..+......+.....+..+........-+.++..+-+.|-..+|..++..+....+|+...|
T Consensus 418 ~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~ 497 (568)
T KOG2396|consen 418 LRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLF 497 (568)
T ss_pred HHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHH
Q ss_pred HHHHHHhcccC--ChHHHHHHHHHHHH-hCCCcchhHHHHHHHHHHhhCCHHHHHHHHhc
Q 043637 481 ETLLAACANIS--SLEQGKQIHCFVIR-NCYEINVVCRGALVEVYTKCCCLEYAIRVFKE 537 (693)
Q Consensus 481 ~~ll~~~~~~~--~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 537 (693)
..++..-.... +..-+..+++.+.. .| .++..|...+..=...|..+.+-.++.+
T Consensus 498 r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~r 555 (568)
T KOG2396|consen 498 RKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWR 555 (568)
T ss_pred HHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHH
No 460
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=30.93 E-value=1.6e+02 Score=21.84 Aligned_cols=63 Identities=19% Similarity=0.170 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCChhhH
Q 043637 61 ARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRT 127 (693)
Q Consensus 61 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 127 (693)
+..++..+.+.|+- +. ...-...+...+.+.|.++++.++.+++.+|..+..++...|....|
T Consensus 18 ~~~v~~~L~~~~Vl-t~---~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVF-TP---DMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCC-CH---HHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34566677666653 22 22223334556788888888888888888888888888777755443
No 461
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=30.92 E-value=4.9e+02 Score=24.99 Aligned_cols=77 Identities=6% Similarity=0.071 Sum_probs=47.6
Q ss_pred HHHHHHhhhCC-CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh----------hCCHHHH
Q 043637 463 MTSFSEMQWET-RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTK----------CCCLEYA 531 (693)
Q Consensus 463 ~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~A 531 (693)
.++|+.+...+ .|.-.+|..+.-.++..=.+.....+|+.+.. |..-+..|+..|+. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 45666776666 77777777777777777777777788877765 22234455544442 3555555
Q ss_pred HHHHhcCCCCCHH
Q 043637 532 IRVFKESSSLDVI 544 (693)
Q Consensus 532 ~~~~~~~~~~~~~ 544 (693)
.++++.-+..|..
T Consensus 338 mkLLQ~yp~tdi~ 350 (370)
T KOG4567|consen 338 MKLLQNYPTTDIS 350 (370)
T ss_pred HHHHhcCCCCCHH
Confidence 5555555444443
No 462
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=30.83 E-value=5.2e+02 Score=25.26 Aligned_cols=100 Identities=8% Similarity=0.005 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhc---cCcHHHHHHHHHHhHHhc-----CC
Q 043637 540 SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIH---EGNVKLALQFFDSMRCKY-----GI 610 (693)
Q Consensus 540 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~-----~~ 610 (693)
+.+...+..++..+.+..+.+...+.++++... .| +...|...+..... .-.++....+|.+..... +.
T Consensus 62 p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~ 139 (321)
T PF08424_consen 62 PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR 139 (321)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc
Confidence 345556777777888888888888888888884 45 45666666644433 234555555555543321 11
Q ss_pred ------CCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 611 ------IPQ-----LEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 611 ------~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
.++ ..++..+...+..+|..+.|+.+++.+.
T Consensus 140 ~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~l 181 (321)
T PF08424_consen 140 MTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALL 181 (321)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHH
Confidence 011 1233444555667999999999998663
No 463
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=30.77 E-value=2.3e+02 Score=23.71 Aligned_cols=48 Identities=13% Similarity=-0.065 Sum_probs=32.6
Q ss_pred cHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCC
Q 043637 211 SWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLS 258 (693)
Q Consensus 211 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 258 (693)
.-..++..+.+.++.-.|.++++++.+.+...+..|.-..++.+...|
T Consensus 22 qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 22 QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 345567777777777888889988888777666666544455444444
No 464
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=30.54 E-value=1.6e+02 Score=29.77 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=12.2
Q ss_pred HHhCCChHHHHHHHHHHHH
Q 043637 553 FCHNERGREALEVFGLMKK 571 (693)
Q Consensus 553 ~~~~g~~~~A~~~~~~m~~ 571 (693)
+...|++.+|+..|+.++.
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~ 232 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILH 232 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHH
Confidence 3566777777777776655
No 465
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=30.42 E-value=90 Score=18.85 Aligned_cols=28 Identities=7% Similarity=-0.111 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhhc
Q 043637 648 MLRKIFDKCRKNGYATLGEWAARRLNEL 675 (693)
Q Consensus 648 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 675 (693)
++..+++.....+++++|..-+++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4556677777778888888888887774
No 466
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=30.19 E-value=80 Score=24.96 Aligned_cols=48 Identities=15% Similarity=0.202 Sum_probs=34.8
Q ss_pred HHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChh
Q 043637 47 HLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLD 94 (693)
Q Consensus 47 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 94 (693)
.++..+...+..-.|.++++.+.+.++..+..+.-..++.+...|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 355556556667788888888888877777777777778887777544
No 467
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=30.03 E-value=5.8e+02 Score=25.61 Aligned_cols=93 Identities=8% Similarity=-0.040 Sum_probs=51.6
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH--HhHH----HHHHH
Q 043637 586 LACIHEGNVKLALQFFDSMRCKYGIIPQL----EHYECMIKLYCRYGYMKELEDFVNRMPFNPTV--PMLR----KIFDK 655 (693)
Q Consensus 586 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~----~l~~~ 655 (693)
.++-..|+...-..++........++-|. ...+.|++.|..-+.++.|..+..+...+... .-|. .++..
T Consensus 177 l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrI 256 (493)
T KOG2581|consen 177 LSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRI 256 (493)
T ss_pred HHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhH
Confidence 34445555555555554444333333332 23556667777777788888777777522111 1111 12223
Q ss_pred HHhcCCccHHHHHHHHHhhcCCC
Q 043637 656 CRKNGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 656 ~~~~g~~~~A~~~~~~~~~~~p~ 678 (693)
...++++..|.+.+-.++...|+
T Consensus 257 kaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 257 KAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHhhcchhHHHHHHHHHHHhCcc
Confidence 33467788888877777777775
No 468
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=29.94 E-value=4e+02 Score=28.03 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=12.6
Q ss_pred CCChhhHHHHHHHhhhCCCCC
Q 043637 121 NGFPGRTLELFLDMNHSGVSA 141 (693)
Q Consensus 121 ~~~~~~a~~~~~~m~~~g~~~ 141 (693)
.|+..+|+.+++++...|..|
T Consensus 270 ~~d~~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 270 HRETEKAINLINKLYGSSVNL 290 (507)
T ss_pred cCCHHHHHHHHHHHHHcCCCH
Confidence 356666666666666665443
No 469
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=29.36 E-value=3e+02 Score=29.41 Aligned_cols=100 Identities=14% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHhhcCCCHHHHHHHHhccC------CCCcccHHHHHHHHHhcCCc------hHHHHHHHHHHHCCCCCCHHhHHHH
Q 043637 183 SLVDAYGKCMVMTDARRMFDDIQ------NKNAVSWNVIVRRYLVAGNG------KEAVVMFFKMLREDIRPLNFTFANA 250 (693)
Q Consensus 183 ~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~g~~p~~~~~~~l 250 (693)
+|..+|...|++-.+.++++... +.=...||..|+.+.+.|++ +.|.++++...-+| |..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~---d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNG---DSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCC---cchHHHHH
Q ss_pred HHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHH
Q 043637 251 LFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSL 285 (693)
Q Consensus 251 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 285 (693)
+.+.....+.....-++.++.......-..++...
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~~s~ngv~di~~~~ 144 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIHRSANGVIDILMHE 144 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHHhhhhhHHHHHhhh
No 470
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=28.88 E-value=5.3e+02 Score=24.75 Aligned_cols=117 Identities=12% Similarity=0.070 Sum_probs=59.4
Q ss_pred HHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc-HHH
Q 043637 518 LVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGN-VKL 596 (693)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~~ 596 (693)
++..+.+.++..+....++.+. ....-...+..+...|++..|+.++.+..+. +. ....|..+-..-.+..+ .+.
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L~~~L~e~~~~ 179 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHLSSQLQETLEL 179 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHHhHHHHHHHHH
Confidence 4445555555555555554442 2333445567777888888888888877662 11 11112111111111111 111
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 043637 597 ALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVN 638 (693)
Q Consensus 597 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 638 (693)
..+.++....+.-..-|+..|..+..+|.-.|+...+.+-+.
T Consensus 180 i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 180 IEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 222222222111224677788888888888887776654443
No 471
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=28.81 E-value=5e+02 Score=24.42 Aligned_cols=81 Identities=19% Similarity=0.161 Sum_probs=42.2
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHH-HHHHHHHh
Q 043637 511 NVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITF-HGILLACI 589 (693)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~ 589 (693)
++.....+...|.+.+++.+|+..|-....++...+..++.-.... |-+.+...| ...+--|.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~----------------~~~~e~dlfi~RaVL~yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK----------------GYPSEADLFIARAVLQYL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH----------------TSS--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh----------------cCCcchhHHHHHHHHHHH
Confidence 5667777888888889888888877655444433332222221111 212122222 12223445
Q ss_pred ccCcHHHHHHHHHHhHHh
Q 043637 590 HEGNVKLALQFFDSMRCK 607 (693)
Q Consensus 590 ~~g~~~~A~~~~~~~~~~ 607 (693)
-.++...|...++...++
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 567778888777776653
No 472
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=28.61 E-value=2.9e+02 Score=27.20 Aligned_cols=39 Identities=18% Similarity=0.116 Sum_probs=26.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCChHHHHHH
Q 043637 546 CNSMILGFCHNERGREALEVFGLMKKEG-IKPDHITFHGI 584 (693)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l 584 (693)
.-.++..|.+.|.+++|+++..-..... .-|+......+
T Consensus 109 lP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i 148 (338)
T PF04124_consen 109 LPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSI 148 (338)
T ss_pred hHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHH
Confidence 4578899999999999988876654421 34665444444
No 473
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=28.37 E-value=87 Score=23.16 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=10.5
Q ss_pred HHHHHHhhCCCCCcccHHHHHHHHHh
Q 043637 328 EARELFNEMPERNVISWNAMLAGYTR 353 (693)
Q Consensus 328 ~A~~~~~~~~~~~~~~~~~l~~~~~~ 353 (693)
++.++++.++..+..+|.....++..
T Consensus 48 q~~~LLd~L~~RG~~AF~~F~~aL~~ 73 (84)
T cd08326 48 QARQLLIDLETRGKQAFPAFLSALRE 73 (84)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 44444444444444444444333333
No 474
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=28.14 E-value=5.5e+02 Score=26.01 Aligned_cols=95 Identities=16% Similarity=0.208 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChH----------------HHHHHHHHHhccCcHHHHHHHHHHh
Q 043637 541 LDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHI----------------TFHGILLACIHEGNVKLALQFFDSM 604 (693)
Q Consensus 541 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------------~~~~l~~~~~~~g~~~~A~~~~~~~ 604 (693)
.+...-..++.++....++.+-++..+. |..|+.. +...|++..+-.||+..|+++++.+
T Consensus 73 W~~~~VLnvL~sLv~kS~I~e~l~~~~~----~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 73 WNVYSVLNVLYSLVDKSQINEQLEAEKR----GEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHhhc----cCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhcc
Confidence 3444444455556655555554443332 3444432 2344557778889999999998877
Q ss_pred HHhcCCC------C--ChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 605 RCKYGII------P--QLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 605 ~~~~~~~------p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
.- +.+ | ...++..++-+|.-.+++.+|.+.|....
T Consensus 149 dl--~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 149 DL--NKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred Cc--ccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 31 111 1 24457778888888999999999887764
No 475
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=28.11 E-value=3.4e+02 Score=27.67 Aligned_cols=22 Identities=5% Similarity=-0.144 Sum_probs=12.8
Q ss_pred HHHHHHHHCCCCCCHHhHHHHH
Q 043637 230 VMFFKMLREDIRPLNFTFANAL 251 (693)
Q Consensus 230 ~~~~~m~~~g~~p~~~~~~~ll 251 (693)
++.-...+.|+..|..+|..|.
T Consensus 197 RL~g~y~e~gv~InrE~FGpLt 218 (480)
T TIGR01503 197 RLVGFYEEQGVHINREPFGPLT 218 (480)
T ss_pred HHHHHHHhcCceeccccccCCC
Confidence 3333344577777777776543
No 476
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=27.87 E-value=1.9e+02 Score=19.85 Aligned_cols=34 Identities=6% Similarity=-0.011 Sum_probs=16.6
Q ss_pred HhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHH
Q 043637 119 TQNGFPGRTLELFLDMNHSGVSANQITYANVLRS 152 (693)
Q Consensus 119 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 152 (693)
...|++-+|-++++.+-...-.+....+..+|+.
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~ 43 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQL 43 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHH
Confidence 4456666666666666543223344444444443
No 477
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=27.81 E-value=5.4e+02 Score=24.51 Aligned_cols=64 Identities=9% Similarity=0.011 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhCCHHHHHHHHhc
Q 043637 474 RPSKFTFETLLAACANISSLEQGKQIHCFVIRN-CYEINVVCRGALVEVYTKCCCLEYAIRVFKE 537 (693)
Q Consensus 474 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 537 (693)
.++..+...++..++..+++..-.++|...... +...|...|..+++.....|+..-...+..+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 555556666666666666666666666655553 4445555555555555555555555555544
No 478
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=27.57 E-value=4.1e+02 Score=25.46 Aligned_cols=28 Identities=14% Similarity=0.016 Sum_probs=17.8
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHH
Q 043637 408 SSNIFVSNALLDMYRKCGNLRSARIWFY 435 (693)
Q Consensus 408 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 435 (693)
..|+..|..+..+|.-.|+...+.+.+.
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4566677777777777776666544333
No 479
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=26.98 E-value=5.7e+02 Score=24.51 Aligned_cols=16 Identities=13% Similarity=0.482 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhCCChH
Q 043637 545 ICNSMILGFCHNERGR 560 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~ 560 (693)
.|..|+.+++..|+.+
T Consensus 323 ~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSE 338 (412)
T ss_pred hhhHHHHHHhcCChHH
Confidence 3455555555555544
No 480
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=26.89 E-value=1.7e+02 Score=22.84 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=10.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC
Q 043637 316 IVSGYAISGRIREARELFNEMP 337 (693)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~~~ 337 (693)
++..|...|+.++|...+.++.
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHhcCCCHHHHHHHHHHhC
Confidence 3444444455555555555443
No 481
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=26.87 E-value=8.5e+02 Score=26.51 Aligned_cols=49 Identities=14% Similarity=0.021 Sum_probs=25.6
Q ss_pred cCCchHHHHHHHHHHHCC---CCCCHHhHHHHHHHhc--CCCCcchhHHHHHHH
Q 043637 222 AGNGKEAVVMFFKMLRED---IRPLNFTFANALFACS--FLSSPYEGMQIHGVI 270 (693)
Q Consensus 222 ~~~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~ 270 (693)
.+++..|++.++.+.... ..|-...+..++.+.. +.+..+++.+....+
T Consensus 152 ~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRA 205 (608)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 367777777777765422 2333344444444433 334445555555544
No 482
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.85 E-value=5.1e+02 Score=23.95 Aligned_cols=58 Identities=12% Similarity=-0.019 Sum_probs=39.4
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHh
Q 043637 449 VLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRN 506 (693)
Q Consensus 449 l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 506 (693)
+-.++...|++-++++.-.++....+.+...|..-..+.+..-+..+|..=|..+.+.
T Consensus 236 y~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 236 YCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 3345556677777777777777666666777776667766666777777766666653
No 483
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=26.77 E-value=5.4e+02 Score=29.35 Aligned_cols=18 Identities=11% Similarity=0.025 Sum_probs=9.9
Q ss_pred HHHcCChhHHHhhhcCCC
Q 043637 289 YVKCGRLEDARGLLDQPD 306 (693)
Q Consensus 289 ~~~~g~~~~a~~~~~~~~ 306 (693)
.+..|+.+-+.-+++...
T Consensus 662 A~~~g~~~iv~~Ll~~GA 679 (823)
T PLN03192 662 AMAEDHVDMVRLLIMNGA 679 (823)
T ss_pred HHHCCcHHHHHHHHHcCC
Confidence 345566666655555433
No 484
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=26.70 E-value=3.2e+02 Score=21.54 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=12.8
Q ss_pred HHHHhCCChHHHHHHHHHHHH
Q 043637 551 LGFCHNERGREALEVFGLMKK 571 (693)
Q Consensus 551 ~~~~~~g~~~~A~~~~~~m~~ 571 (693)
..+...|+.-+|+++.+++..
T Consensus 4 ~~~~~rGnhiKAL~iied~i~ 24 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLIS 24 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 345566666666666666655
No 485
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=26.57 E-value=4.4e+02 Score=28.35 Aligned_cols=256 Identities=12% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHhhhcCCCCCCCCchhhhHHHhhhccCCCCCChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHH
Q 043637 6 ATILKNILSKSSPKPTPSKTLTKTISGHLKSDEPVSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIE 85 (693)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (693)
++.+-..+-...|...+...+......-++.. +++...-...+-...-.|++..+.+....+ ..+..+-..+.+
T Consensus 262 yE~~~a~~ly~~P~~~~~e~l~~~a~~~~~~~-~~~~~~~~e~~~~~i~~~d~~~vL~~~~~~-----~~~~w~aahlad 335 (566)
T PF07575_consen 262 YEALVALLLYVDPTCKPFELLHEYAQSCLEEF-PPDSTNPLEQILLAIFEGDIESVLKEISSL-----FDDWWFAAHLAD 335 (566)
T ss_dssp HHHHHHHHHHT------TTTHHHHHHHHHHHS----TTSTTHHHHHHHHTS--GGGHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHhheeeCCCcchhhhHHHHHHHHHhcC-CCCCCCHHHHHHHHHHccCHHHHHHHHHHH-----ccchhHHHHHHH
Q ss_pred HHhccCChh-------h------------HHHhhccCCCCCcccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhH
Q 043637 86 CYGKCGNLD-------D------------ARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITY 146 (693)
Q Consensus 86 ~~~~~g~~~-------~------------A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 146 (693)
.+...|-++ . |..++. +...|..-+.-+...++.. ...++.+..+-...+...-
T Consensus 336 Ll~~~g~L~~~~~~~~~~~~lre~~ll~YA~~L~s-----~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~ 408 (566)
T PF07575_consen 336 LLEHKGLLEDSEQEDFGGSSLREYLLLEYASSLMS-----HHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDA 408 (566)
T ss_dssp HHHHTTSS--SS-----TS-HHHHHHHHHHHHHHT------TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHH
T ss_pred HHHhcCccccccccccccccHHHHHHHHHHHHHhc-----CcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHH
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCC----CCcccHHHHHHHHHhc
Q 043637 147 ANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQN----KNAVSWNVIVRRYLVA 222 (693)
Q Consensus 147 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~ 222 (693)
.-++..|.+.|-.+.+..+.+.+-..-.. ..-|..-+.-+.++|+...+..+.+.+.+ .+......++......
T Consensus 409 ~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~ 486 (566)
T PF07575_consen 409 EKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSP 486 (566)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-------------------------------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcch
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHH
Q 043637 223 GNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMY 289 (693)
Q Consensus 223 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 289 (693)
.-...-+..+....+ .......++..+|.+.+-.+.+.+..|...-...|.++.
T Consensus 487 ~~~~~~L~fla~yre-------------F~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~l 540 (566)
T PF07575_consen 487 MLLSQRLSFLAKYRE-------------FYELYDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDAL 540 (566)
T ss_dssp -------------------------------------------------------------------
T ss_pred hhhhhhhHHHHHHHH-------------HHHHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
No 486
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.51 E-value=2.3e+02 Score=24.42 Aligned_cols=60 Identities=7% Similarity=0.101 Sum_probs=29.7
Q ss_pred HHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChh
Q 043637 236 LREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLE 296 (693)
Q Consensus 236 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 296 (693)
+..|++++..-. .++..+....+.-.|.++++.+.+.+...+..|.-..++.+...|-+.
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 334544444332 222233233344456666666666655555555555556666666554
No 487
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.09 E-value=1e+03 Score=27.13 Aligned_cols=27 Identities=19% Similarity=0.521 Sum_probs=23.5
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHhhh
Q 043637 110 SWNAMLGAYTQNGFPGRTLELFLDMNH 136 (693)
Q Consensus 110 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 136 (693)
-|..|+-.|...|+.++|+++|.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 488899999999999999999988865
No 488
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=25.95 E-value=6.8e+02 Score=25.09 Aligned_cols=54 Identities=9% Similarity=-0.081 Sum_probs=34.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCChHH----HHHHHHHH--hccCcHHHHHHHHHH
Q 043637 550 ILGFCHNERGREALEVFGLMKKEGIKPDHIT----FHGILLAC--IHEGNVKLALQFFDS 603 (693)
Q Consensus 550 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~l~~~~--~~~g~~~~A~~~~~~ 603 (693)
+..+...+++..|.++|+++....+.|+... |..+..+| ...-++++|.+.++.
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3455677888999999998888765554433 22333333 244567788888874
No 489
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=25.77 E-value=4.4e+02 Score=23.32 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=14.1
Q ss_pred HHhcCChHHHHHHHHhCC
Q 043637 624 YCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 624 ~~~~g~~~~A~~~~~~~~ 641 (693)
..+.|++++|.++++-|.
T Consensus 131 ~l~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 131 LLRKGSFEEAERFLKFME 148 (204)
T ss_pred HHHhccHHHHHHHHHHHH
Confidence 346889999998888764
No 490
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=25.52 E-value=2.1e+02 Score=21.37 Aligned_cols=42 Identities=24% Similarity=0.350 Sum_probs=23.0
Q ss_pred HHHHhccCChhhHHHhhccCCC-CCcccHHHHHHHHHhCCChh
Q 043637 84 IECYGKCGNLDDARGLFDEMPE-RDGGSWNAMLGAYTQNGFPG 125 (693)
Q Consensus 84 ~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~ 125 (693)
.......|+.+.|..+++.+.+ ....-+..++.++-..|...
T Consensus 41 ~a~~~~~g~~~aa~~Ll~~L~~~r~~~wf~~Fl~AL~~~g~~~ 83 (88)
T cd08812 41 LAEERNKGNIAAAEELLDRLERCDKPGWFQAFLDALRRTGNDD 83 (88)
T ss_pred HHHHhccChHHHHHHHHHHHHHhccCCcHHHHHHHHHHcCCcc
Confidence 3333334666666666666654 44555566666666555433
No 491
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=25.42 E-value=6.4e+02 Score=24.60 Aligned_cols=99 Identities=10% Similarity=0.081 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHHHh------CCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 043637 540 SLDVIICNSMILGFCH------NERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP 612 (693)
Q Consensus 540 ~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 612 (693)
.|.+......|.++-. .-+|.....+|+-+.. +.|++ ++.|--+ +.....-.+.++.+.+-+..+..+.-
T Consensus 287 ~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAV-Ala~~~Gp~agLa~ve~L~~~~~L~g 363 (415)
T COG4941 287 RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAV-ALAMREGPAAGLAMVEALLARPRLDG 363 (415)
T ss_pred CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHH-HHHHhhhHHhHHHHHHHhhccccccc
Confidence 4555555555544421 1356677777777777 56765 4455443 34444445677777776654322222
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 613 QLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 613 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
-...+..-...+.+.|+.++|...|++..
T Consensus 364 y~~~h~~RadlL~rLgr~~eAr~aydrAi 392 (415)
T COG4941 364 YHLYHAARADLLARLGRVEEARAAYDRAI 392 (415)
T ss_pred ccccHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 22233444566778888888888888764
No 492
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=25.33 E-value=2e+02 Score=21.57 Aligned_cols=63 Identities=14% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCChhhH
Q 043637 61 ARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRT 127 (693)
Q Consensus 61 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 127 (693)
...++..+.+.| +.+-...-...+..-+.+.+.++++.++..++.+|..+..++...+....|
T Consensus 22 ~~~v~~~L~~~g----vlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~~La 84 (90)
T cd08332 22 LDELLIHLLQKD----ILTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQEHLC 84 (90)
T ss_pred HHHHHHHHHHcC----CCCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChHHHH
No 493
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=25.29 E-value=3.7e+02 Score=21.79 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHH
Q 043637 617 YECMIKLYCRYGYMKELEDFVN 638 (693)
Q Consensus 617 ~~~l~~~~~~~g~~~~A~~~~~ 638 (693)
|......+...|++.+|.++++
T Consensus 102 Ye~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 102 YEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444455555555555443
No 494
>PHA03100 ankyrin repeat protein; Provisional
Probab=25.28 E-value=7.9e+02 Score=25.57 Aligned_cols=14 Identities=14% Similarity=0.192 Sum_probs=6.3
Q ss_pred cCCCHHHHHHHHhc
Q 043637 190 KCMVMTDARRMFDD 203 (693)
Q Consensus 190 ~~g~~~~A~~~~~~ 203 (693)
..|+.+-+..+++.
T Consensus 117 ~~~~~~iv~~Ll~~ 130 (480)
T PHA03100 117 KSNSYSIVEYLLDN 130 (480)
T ss_pred ccChHHHHHHHHHc
Confidence 44444444444443
No 495
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=25.25 E-value=2.3e+02 Score=22.14 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=10.1
Q ss_pred HHHHHHhcCChHHHHHHHHHh
Q 043637 449 VLTGYARRGQSEEAMTSFSEM 469 (693)
Q Consensus 449 l~~~~~~~~~~~~a~~~~~~~ 469 (693)
++..|...++.++|..-+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444455555555555554
No 496
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=25.01 E-value=1.9e+02 Score=22.81 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=25.5
Q ss_pred HHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccC
Q 043637 114 MLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEEL 157 (693)
Q Consensus 114 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 157 (693)
++..+...+.+-.|.++++.+.+.+..++..|.--.|+.+...|
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 45555555566667777777776665555555444444444443
No 497
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=24.86 E-value=2.7e+02 Score=24.04 Aligned_cols=15 Identities=7% Similarity=0.018 Sum_probs=6.2
Q ss_pred hhhHHHHHHHhhhCC
Q 043637 124 PGRTLELFLDMNHSG 138 (693)
Q Consensus 124 ~~~a~~~~~~m~~~g 138 (693)
+-.|.++++.+.+.+
T Consensus 41 hlSa~eI~~~L~~~~ 55 (169)
T PRK11639 41 AISAYDLLDLLREAE 55 (169)
T ss_pred CCCHHHHHHHHHhhC
Confidence 333444444444433
No 498
>PRK13342 recombination factor protein RarA; Reviewed
Probab=23.80 E-value=7.9e+02 Score=25.07 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=31.5
Q ss_pred HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc
Q 043637 344 WNAMLAGYTR---SLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAG 388 (693)
Q Consensus 344 ~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 388 (693)
...++.++.+ .++.+.|+.++..|.+.|..|....-..++.++..
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4444555444 57899999999999999988886665555554433
No 499
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=23.78 E-value=2.1e+02 Score=19.91 Aligned_cols=50 Identities=8% Similarity=0.145 Sum_probs=25.9
Q ss_pred CChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 043637 576 PDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRY 627 (693)
Q Consensus 576 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 627 (693)
|....++.++..+++..-.++++..+.++... |. .+...|-.-++.++|.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~-g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQR-GS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TS-S-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CC-CCHHHHHHHHHHHHHH
Confidence 44445555666666666666666666666542 32 3445555555555443
No 500
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=23.40 E-value=86 Score=29.20 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcccCC
Q 043637 648 MLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRFDRY 693 (693)
Q Consensus 648 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 693 (693)
....+-..+...+..+.|....++.+.++|++|-....-|-+|.+|
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql 228 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQL 228 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhc
Done!