Query 043637
Match_columns 693
No_of_seqs 626 out of 3660
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 11:33:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 7.4E-41 2.5E-45 360.0 34.5 495 188-691 63-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.9E-38 6.5E-43 341.3 39.6 497 86-655 62-593 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.9E-26 6.5E-31 233.1 39.0 368 317-691 6-384 (388)
4 4g26_A Pentatricopeptide repea 99.9 2.1E-27 7.1E-32 243.0 18.2 184 110-293 28-224 (501)
5 4g26_A Pentatricopeptide repea 99.9 9E-27 3.1E-31 238.2 21.1 213 359-626 8-222 (501)
6 1w3b_A UDP-N-acetylglucosamine 99.9 2.7E-24 9.3E-29 217.3 36.6 366 288-660 8-387 (388)
7 2gw1_A Mitochondrial precursor 99.9 5.4E-23 1.8E-27 216.5 29.7 261 424-688 202-491 (514)
8 1xi4_A Clathrin heavy chain; a 99.9 2.2E-18 7.5E-23 186.0 58.4 639 8-693 397-1327(1630)
9 2gw1_A Mitochondrial precursor 99.9 3.5E-21 1.2E-25 202.7 36.0 433 110-606 8-477 (514)
10 2y4t_A DNAJ homolog subfamily 99.9 5.3E-21 1.8E-25 197.5 31.4 319 340-688 25-371 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 2E-20 6.7E-25 193.2 33.7 345 309-680 25-415 (450)
12 3fp2_A TPR repeat-containing p 99.9 8.4E-20 2.9E-24 193.2 38.9 432 108-606 25-490 (537)
13 3fp2_A TPR repeat-containing p 99.9 1.4E-20 4.7E-25 199.3 30.2 234 445-682 245-498 (537)
14 1xi4_A Clathrin heavy chain; a 99.9 3.2E-16 1.1E-20 169.5 56.1 387 38-466 981-1378(1630)
15 3ieg_A DNAJ homolog subfamily 99.8 1.3E-18 4.4E-23 173.6 31.6 321 341-690 3-350 (359)
16 3hym_B Cell division cycle pro 99.8 1.9E-18 6.6E-23 170.1 27.3 280 408-690 19-314 (330)
17 3ieg_A DNAJ homolog subfamily 99.8 1E-16 3.4E-21 159.8 34.1 323 309-657 2-351 (359)
18 2xm6_A Protein corresponding t 99.8 6.7E-16 2.3E-20 160.5 38.9 365 278-690 38-450 (490)
19 3hym_B Cell division cycle pro 99.8 1.9E-16 6.6E-21 155.7 31.9 285 339-662 20-321 (330)
20 2xm6_A Protein corresponding t 99.8 1.9E-15 6.7E-20 157.0 35.0 401 227-680 25-472 (490)
21 1b89_A Protein (clathrin heavy 99.8 8.5E-17 2.9E-21 156.1 21.5 278 54-364 15-305 (449)
22 3mkr_A Coatomer subunit epsilo 99.7 8.7E-16 3E-20 146.6 27.8 257 419-684 7-273 (291)
23 1fch_A Peroxisomal targeting s 99.7 2.6E-16 8.8E-21 157.5 25.2 284 322-673 37-357 (368)
24 1b89_A Protein (clathrin heavy 99.7 3.7E-16 1.3E-20 151.6 24.3 220 89-337 15-234 (449)
25 2ooe_A Cleavage stimulation fa 99.7 2.7E-15 9.3E-20 157.6 33.0 215 460-678 255-495 (530)
26 4g1t_A Interferon-induced prot 99.7 1.2E-15 4.2E-20 158.2 29.4 217 458-687 228-471 (472)
27 1fch_A Peroxisomal targeting s 99.7 1.4E-16 4.7E-21 159.5 20.4 266 421-691 35-341 (368)
28 4eqf_A PEX5-related protein; a 99.7 8E-17 2.7E-21 160.9 17.6 233 442-679 64-314 (365)
29 4eqf_A PEX5-related protein; a 99.7 8.3E-16 2.9E-20 153.5 23.9 262 340-639 64-352 (365)
30 2ooe_A Cleavage stimulation fa 99.7 2.8E-13 9.6E-18 142.2 41.2 198 442-641 271-490 (530)
31 3cv0_A Peroxisome targeting si 99.7 6.6E-16 2.3E-20 151.6 17.8 259 415-678 25-318 (327)
32 3cv0_A Peroxisome targeting si 99.7 1.4E-14 4.7E-19 142.2 25.4 264 340-641 20-313 (327)
33 3mkr_A Coatomer subunit epsilo 99.7 5.4E-14 1.8E-18 134.2 28.2 191 377-571 66-263 (291)
34 3uq3_A Heat shock protein STI1 99.6 7.9E-15 2.7E-19 138.3 19.5 235 444-690 6-257 (258)
35 3spa_A Mtrpol, DNA-directed RN 99.6 2.2E-16 7.6E-21 165.5 7.7 149 176-324 125-286 (1134)
36 3u4t_A TPR repeat-containing p 99.6 1.7E-14 5.7E-19 137.4 19.5 240 447-690 7-265 (272)
37 3spa_A Mtrpol, DNA-directed RN 99.6 7.4E-16 2.5E-20 161.6 8.5 124 512-636 127-258 (1134)
38 4g1t_A Interferon-induced prot 99.6 8.3E-13 2.8E-17 136.8 31.6 364 209-641 51-457 (472)
39 2h6f_A Protein farnesyltransfe 99.6 5.2E-14 1.8E-18 138.8 18.7 243 443-690 97-363 (382)
40 2q7f_A YRRB protein; TPR, prot 99.6 6.8E-14 2.3E-18 130.5 17.8 212 444-691 24-238 (243)
41 2pl2_A Hypothetical conserved 99.6 2.5E-13 8.5E-18 123.7 20.2 204 443-672 5-211 (217)
42 3e4b_A ALGK; tetratricopeptide 99.6 5.6E-13 1.9E-17 136.1 24.9 372 287-677 11-423 (452)
43 2ho1_A Type 4 fimbrial biogene 99.6 3.7E-13 1.3E-17 126.3 21.9 210 443-686 37-249 (252)
44 1ouv_A Conserved hypothetical 99.6 1.1E-12 3.9E-17 124.6 25.5 231 442-684 5-260 (273)
45 2vq2_A PILW, putative fimbrial 99.6 4E-13 1.4E-17 123.5 21.7 205 481-688 12-224 (225)
46 2pl2_A Hypothetical conserved 99.5 1.4E-13 4.9E-18 125.3 17.3 177 510-691 3-196 (217)
47 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.1E-13 7.3E-18 129.9 18.8 221 456-682 18-251 (275)
48 3e4b_A ALGK; tetratricopeptide 99.5 5.6E-12 1.9E-16 128.6 27.9 184 47-239 8-209 (452)
49 3u4t_A TPR repeat-containing p 99.5 3.5E-12 1.2E-16 121.2 24.3 240 414-656 6-265 (272)
50 3uq3_A Heat shock protein STI1 99.5 2.5E-12 8.5E-17 121.0 21.9 223 343-606 7-235 (258)
51 1xnf_A Lipoprotein NLPI; TPR, 99.5 7.5E-13 2.6E-17 126.0 15.9 216 446-669 46-269 (275)
52 3vtx_A MAMA; tetratricopeptide 99.5 1.1E-12 3.6E-17 116.3 15.1 167 511-681 4-176 (184)
53 2q7f_A YRRB protein; TPR, prot 99.5 1.7E-12 5.9E-17 120.9 17.2 196 409-640 21-219 (243)
54 2ho1_A Type 4 fimbrial biogene 99.5 1.3E-11 4.5E-16 115.6 22.9 195 411-640 37-235 (252)
55 2h6f_A Protein farnesyltransfe 99.4 8.4E-12 2.9E-16 123.0 21.6 241 412-658 98-365 (382)
56 2ond_A Cleavage stimulation fa 99.4 1.8E-11 6.1E-16 118.3 22.6 210 428-640 33-267 (308)
57 1ouv_A Conserved hypothetical 99.4 6.4E-11 2.2E-15 112.4 26.1 220 410-641 5-249 (273)
58 2vq2_A PILW, putative fimbrial 99.4 1.8E-11 6.3E-16 112.3 21.5 199 444-647 9-216 (225)
59 3sf4_A G-protein-signaling mod 99.4 1.6E-12 5.5E-17 131.7 15.5 265 375-640 8-333 (406)
60 4a1s_A PINS, partner of inscut 99.4 3E-12 1E-16 130.0 16.7 230 446-677 89-374 (411)
61 3ro2_A PINS homolog, G-protein 99.4 5.8E-12 2E-16 123.8 17.2 135 544-678 184-335 (338)
62 3sf4_A G-protein-signaling mod 99.4 6.1E-12 2.1E-16 127.4 17.4 292 341-632 9-365 (406)
63 2ond_A Cleavage stimulation fa 99.4 3.8E-11 1.3E-15 116.0 21.9 216 460-680 33-275 (308)
64 4abn_A Tetratricopeptide repea 99.4 1.7E-11 5.9E-16 125.9 19.2 209 459-672 84-318 (474)
65 4a1s_A PINS, partner of inscut 99.4 1.4E-11 4.8E-16 125.0 17.2 264 343-641 50-370 (411)
66 3as5_A MAMA; tetratricopeptide 99.3 6E-11 2.1E-15 105.0 18.9 169 512-684 8-182 (186)
67 4e6h_A MRNA 3'-END-processing 99.3 4E-09 1.4E-13 111.1 35.2 216 462-681 328-576 (679)
68 3ro2_A PINS homolog, G-protein 99.3 3.8E-11 1.3E-15 117.9 18.8 265 344-641 8-330 (338)
69 3ulq_A Response regulator aspa 99.3 7.3E-11 2.5E-15 118.2 20.8 229 449-677 109-370 (383)
70 3nf1_A KLC 1, kinesin light ch 99.3 4E-12 1.4E-16 123.4 11.0 233 446-678 30-310 (311)
71 4i17_A Hypothetical protein; T 99.3 3.4E-11 1.2E-15 110.8 16.6 206 474-691 4-225 (228)
72 4e6h_A MRNA 3'-END-processing 99.3 5E-08 1.7E-12 102.8 41.7 226 359-589 327-585 (679)
73 3vtx_A MAMA; tetratricopeptide 99.3 2.2E-10 7.6E-15 101.2 19.6 161 444-640 6-167 (184)
74 4abn_A Tetratricopeptide repea 99.3 9.2E-11 3.2E-15 120.4 17.5 208 428-641 85-319 (474)
75 3q15_A PSP28, response regulat 99.2 7E-09 2.4E-13 103.5 28.3 228 449-676 107-366 (378)
76 3ulq_A Response regulator aspa 99.2 1E-09 3.5E-14 109.8 22.2 205 342-606 144-367 (383)
77 4gyw_A UDP-N-acetylglucosamine 99.2 1.7E-10 5.8E-15 123.1 15.6 163 512-678 9-177 (723)
78 3nf1_A KLC 1, kinesin light ch 99.2 5.4E-11 1.8E-15 115.4 10.9 152 20-171 5-181 (311)
79 3mv2_B Coatomer subunit epsilo 99.2 1.8E-09 6.2E-14 100.5 19.3 243 421-684 23-291 (310)
80 4gyw_A UDP-N-acetylglucosamine 99.2 2.2E-10 7.5E-15 122.3 14.2 147 541-691 7-156 (723)
81 3q15_A PSP28, response regulat 99.1 1.9E-08 6.5E-13 100.3 26.1 221 417-640 107-362 (378)
82 3as5_A MAMA; tetratricopeptide 99.1 3.7E-09 1.3E-13 93.3 18.7 157 446-605 11-171 (186)
83 4i17_A Hypothetical protein; T 99.1 1.1E-09 3.7E-14 100.6 14.6 161 511-680 6-182 (228)
84 4ga2_A E3 SUMO-protein ligase 99.1 1.2E-10 4E-15 98.6 6.7 139 549-691 3-145 (150)
85 1hz4_A MALT regulatory protein 99.1 9.3E-08 3.2E-12 95.2 28.3 266 347-640 20-319 (373)
86 1hz4_A MALT regulatory protein 99.1 9.5E-08 3.2E-12 95.1 28.0 263 313-606 17-321 (373)
87 1qqe_A Vesicular transport pro 99.1 3.1E-09 1.1E-13 101.5 15.8 209 444-680 38-274 (292)
88 3edt_B KLC 2, kinesin light ch 99.0 3.5E-09 1.2E-13 100.8 16.1 199 478-676 44-282 (283)
89 3qky_A Outer membrane assembly 99.0 6.7E-09 2.3E-13 97.5 17.0 166 515-682 18-231 (261)
90 4gco_A Protein STI-1; structur 99.0 1.8E-09 6E-14 88.0 10.4 115 574-690 8-125 (126)
91 2fo7_A Synthetic consensus TPR 99.0 8E-09 2.7E-13 85.5 14.7 130 545-678 3-135 (136)
92 3urz_A Uncharacterized protein 99.0 5.1E-09 1.8E-13 94.2 13.4 130 546-680 57-191 (208)
93 2vsy_A XCC0866; transferase, g 99.0 8.2E-09 2.8E-13 109.2 15.7 158 526-687 3-169 (568)
94 1qqe_A Vesicular transport pro 98.9 9E-08 3.1E-12 91.3 20.6 197 411-641 37-267 (292)
95 3mv2_B Coatomer subunit epsilo 98.9 1.1E-07 3.8E-12 88.5 20.2 184 462-649 85-289 (310)
96 2pzi_A Probable serine/threoni 98.9 1.9E-09 6.6E-14 115.8 9.2 196 488-689 402-616 (681)
97 3dra_A Protein farnesyltransfe 98.9 3.8E-07 1.3E-11 85.9 23.7 229 457-690 47-303 (306)
98 3qky_A Outer membrane assembly 98.9 5.5E-08 1.9E-12 91.2 17.8 58 547-606 152-223 (261)
99 2pzi_A Probable serine/threoni 98.9 2E-08 6.8E-13 108.0 16.5 181 454-641 402-603 (681)
100 2yhc_A BAMD, UPF0169 lipoprote 98.9 8.1E-08 2.8E-12 87.6 17.5 64 619-682 152-220 (225)
101 2fo7_A Synthetic consensus TPR 98.8 9.7E-08 3.3E-12 78.8 15.0 127 446-606 4-131 (136)
102 3urz_A Uncharacterized protein 98.8 6.4E-08 2.2E-12 87.0 14.7 134 516-654 58-198 (208)
103 2r5s_A Uncharacterized protein 98.8 5.8E-08 2E-12 84.6 13.9 156 515-674 9-172 (176)
104 3edt_B KLC 2, kinesin light ch 98.8 5E-08 1.7E-12 92.7 14.5 27 579-605 253-279 (283)
105 3qou_A Protein YBBN; thioredox 98.8 8.9E-08 3.1E-12 90.9 14.8 153 517-673 122-282 (287)
106 2ifu_A Gamma-SNAP; membrane fu 98.8 6.4E-08 2.2E-12 93.1 13.9 155 484-641 43-222 (307)
107 4ga2_A E3 SUMO-protein ligase 98.8 1.6E-08 5.6E-13 85.3 8.6 138 519-660 4-148 (150)
108 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.5E-07 5.2E-12 85.0 14.6 124 514-641 8-148 (213)
109 3qou_A Protein YBBN; thioredox 98.7 4.3E-07 1.5E-11 86.2 18.1 163 475-640 115-281 (287)
110 2uy1_A Cleavage stimulation fa 98.7 1.9E-05 6.4E-10 80.8 31.3 203 460-674 196-412 (493)
111 3rjv_A Putative SEL1 repeat pr 98.7 2E-07 6.8E-12 83.9 14.7 174 494-677 3-199 (212)
112 3gyz_A Chaperone protein IPGC; 98.7 7.3E-08 2.5E-12 80.7 10.6 105 574-680 31-138 (151)
113 2r5s_A Uncharacterized protein 98.7 2.1E-07 7.3E-12 81.0 14.1 154 484-640 13-170 (176)
114 3rjv_A Putative SEL1 repeat pr 98.7 6.2E-07 2.1E-11 80.7 17.5 179 460-649 3-203 (212)
115 2vgx_A Chaperone SYCD; alterna 98.7 3.1E-08 1E-12 83.3 8.0 102 579-682 22-125 (148)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.7 5.1E-07 1.7E-11 81.5 15.8 120 480-605 9-148 (213)
117 4f3v_A ESX-1 secretion system 98.7 3E-07 1E-11 84.5 13.9 137 546-687 105-248 (282)
118 2yhc_A BAMD, UPF0169 lipoprote 98.7 6.4E-07 2.2E-11 81.6 15.8 183 444-641 5-211 (225)
119 2e2e_A Formate-dependent nitri 98.6 8.7E-08 3E-12 83.7 9.1 129 554-686 21-155 (177)
120 1na0_A Designed protein CTPR3; 98.6 2.2E-07 7.6E-12 75.3 10.8 110 579-690 10-121 (125)
121 2uy1_A Cleavage stimulation fa 98.6 0.00011 3.7E-09 75.2 33.1 123 445-570 288-411 (493)
122 2lni_A Stress-induced-phosphop 98.6 2.2E-07 7.5E-12 76.4 9.7 109 580-690 18-128 (133)
123 2xcb_A PCRH, regulatory protei 98.6 1.2E-07 4.1E-12 79.1 8.1 101 580-682 20-122 (142)
124 2ifu_A Gamma-SNAP; membrane fu 98.6 4.2E-07 1.5E-11 87.3 13.0 223 389-636 4-254 (307)
125 1elw_A TPR1-domain of HOP; HOP 98.6 3.4E-07 1.2E-11 73.3 10.5 110 579-690 5-116 (118)
126 3q7a_A Farnesyltransferase alp 98.6 1.8E-05 6E-10 75.4 23.3 228 453-685 64-342 (349)
127 3u3w_A Transcriptional activat 98.6 4.9E-06 1.7E-10 79.3 19.8 158 518-675 81-266 (293)
128 2vsy_A XCC0866; transferase, g 98.6 1.1E-06 3.8E-11 92.8 16.6 147 424-571 2-156 (568)
129 2vyi_A SGTA protein; chaperone 98.5 4.8E-07 1.6E-11 74.0 10.3 108 581-690 15-124 (131)
130 3sz7_A HSC70 cochaperone (SGT) 98.5 4.7E-07 1.6E-11 77.7 10.5 96 542-641 10-106 (164)
131 3dss_A Geranylgeranyl transfer 98.5 1.5E-05 5.3E-10 75.4 21.5 224 461-689 48-318 (331)
132 2qfc_A PLCR protein; TPR, HTH, 98.5 6.5E-06 2.2E-10 78.4 18.9 159 517-675 80-266 (293)
133 3upv_A Heat shock protein STI1 98.5 4.4E-07 1.5E-11 73.8 8.9 107 580-688 6-120 (126)
134 2c2l_A CHIP, carboxy terminus 98.5 1.3E-06 4.5E-11 82.5 13.3 191 477-677 4-201 (281)
135 4gco_A Protein STI-1; structur 98.5 1.8E-06 6.2E-11 69.9 12.2 104 545-652 15-121 (126)
136 2dba_A Smooth muscle cell asso 98.5 1.7E-06 5.8E-11 72.6 11.9 109 579-690 29-143 (148)
137 3gw4_A Uncharacterized protein 98.4 3.8E-06 1.3E-10 75.0 14.8 97 544-640 67-173 (203)
138 3gw4_A Uncharacterized protein 98.4 3E-06 1E-10 75.6 14.1 154 524-677 4-178 (203)
139 3u3w_A Transcriptional activat 98.4 2E-05 6.7E-10 75.0 20.6 167 448-640 80-263 (293)
140 2c2l_A CHIP, carboxy terminus 98.4 2.5E-07 8.4E-12 87.5 6.8 172 511-690 3-179 (281)
141 3dra_A Protein farnesyltransfe 98.4 6.6E-05 2.3E-09 70.7 23.2 52 457-508 124-177 (306)
142 3gyz_A Chaperone protein IPGC; 98.4 6.7E-07 2.3E-11 74.8 8.4 102 542-647 35-138 (151)
143 1a17_A Serine/threonine protei 98.4 4E-06 1.4E-10 71.9 13.6 127 545-675 15-146 (166)
144 4f3v_A ESX-1 secretion system 98.4 2.6E-06 8.8E-11 78.2 12.7 137 515-653 105-248 (282)
145 1a17_A Serine/threonine protei 98.4 3.4E-06 1.1E-10 72.4 12.9 123 514-640 15-143 (166)
146 1na0_A Designed protein CTPR3; 98.4 5.6E-06 1.9E-10 66.8 13.4 112 543-658 9-123 (125)
147 2lni_A Stress-induced-phosphop 98.4 4E-06 1.4E-10 68.6 12.7 116 541-660 14-132 (133)
148 2kck_A TPR repeat; tetratricop 98.4 2.2E-06 7.6E-11 67.7 10.5 101 578-680 6-111 (112)
149 2vyi_A SGTA protein; chaperone 98.4 6.9E-06 2.4E-10 66.9 13.6 116 543-662 12-130 (131)
150 2fbn_A 70 kDa peptidylprolyl i 98.4 2.9E-07 9.9E-12 82.0 5.4 152 519-674 11-185 (198)
151 1hxi_A PEX5, peroxisome target 98.4 1.3E-06 4.5E-11 70.2 8.8 99 580-680 19-119 (121)
152 1p5q_A FKBP52, FK506-binding p 98.4 2.5E-06 8.4E-11 83.0 12.3 118 512-633 147-283 (336)
153 2qfc_A PLCR protein; TPR, HTH, 98.4 1.9E-05 6.5E-10 75.2 18.0 96 545-640 157-263 (293)
154 2vgx_A Chaperone SYCD; alterna 98.4 2.3E-06 7.9E-11 71.6 10.2 92 545-640 23-115 (148)
155 3q49_B STIP1 homology and U bo 98.3 2.9E-06 1E-10 70.0 9.7 95 542-640 8-103 (137)
156 4gcn_A Protein STI-1; structur 98.3 5.4E-06 1.8E-10 67.2 10.8 61 544-606 9-70 (127)
157 2if4_A ATFKBP42; FKBP-like, al 98.3 2.5E-06 8.5E-11 82.9 9.8 133 545-681 181-334 (338)
158 2fbn_A 70 kDa peptidylprolyl i 98.3 1.2E-06 4.1E-11 77.9 7.0 150 486-640 13-183 (198)
159 1p5q_A FKBP52, FK506-binding p 98.3 3.8E-06 1.3E-10 81.6 11.1 130 542-675 146-294 (336)
160 2e2e_A Formate-dependent nitri 98.3 4.6E-06 1.6E-10 72.5 10.5 92 513-606 45-143 (177)
161 1dce_A Protein (RAB geranylger 98.2 2.1E-05 7.2E-10 81.8 16.7 162 527-692 44-238 (567)
162 2xev_A YBGF; tetratricopeptide 98.2 6.5E-06 2.2E-10 67.0 10.4 88 549-640 8-102 (129)
163 4gcn_A Protein STI-1; structur 98.2 1.2E-05 4.2E-10 65.1 11.6 105 579-686 9-122 (127)
164 2hr2_A Hypothetical protein; a 98.2 3.9E-06 1.3E-10 69.2 8.3 106 582-687 15-143 (159)
165 3rkv_A Putative peptidylprolyl 98.2 3.2E-06 1.1E-10 72.2 7.8 65 616-680 65-131 (162)
166 2dba_A Smooth muscle cell asso 98.2 2.7E-05 9.2E-10 65.0 13.5 111 541-655 26-142 (148)
167 3upv_A Heat shock protein STI1 98.2 1.4E-05 4.9E-10 64.6 11.3 94 544-641 5-99 (126)
168 1elw_A TPR1-domain of HOP; HOP 98.2 2.8E-05 9.6E-10 61.8 12.9 95 543-641 4-99 (118)
169 1elr_A TPR2A-domain of HOP; HO 98.2 4.8E-06 1.7E-10 67.9 8.4 95 544-640 5-105 (131)
170 3sz7_A HSC70 cochaperone (SGT) 98.2 2.1E-05 7.3E-10 67.2 12.7 100 512-613 11-114 (164)
171 2xcb_A PCRH, regulatory protei 98.2 2.5E-05 8.4E-10 64.8 12.6 92 545-640 20-112 (142)
172 1wao_1 Serine/threonine protei 98.1 3.4E-06 1.2E-10 86.2 7.9 82 522-605 16-101 (477)
173 3ro3_A PINS homolog, G-protein 98.1 1.7E-05 5.7E-10 67.5 11.1 133 545-677 11-160 (164)
174 3q7a_A Farnesyltransferase alp 98.1 5E-05 1.7E-09 72.3 14.7 162 526-691 68-253 (349)
175 3dss_A Geranylgeranyl transfer 98.1 0.00017 5.9E-09 68.3 17.7 187 494-685 47-277 (331)
176 4b4t_Q 26S proteasome regulato 98.1 0.00049 1.7E-08 69.7 22.6 161 446-606 58-244 (434)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2E-05 6.8E-10 80.2 12.1 129 542-674 267-414 (457)
178 3k9i_A BH0479 protein; putativ 98.0 2.3E-06 7.7E-11 68.4 3.5 84 556-641 3-88 (117)
179 4b4t_Q 26S proteasome regulato 98.0 0.00023 7.8E-09 72.1 19.1 56 450-505 11-83 (434)
180 1elr_A TPR2A-domain of HOP; HO 98.0 1.6E-05 5.6E-10 64.6 8.4 107 515-624 7-122 (131)
181 2xev_A YBGF; tetratricopeptide 98.0 8.8E-05 3E-09 60.1 12.4 101 582-684 6-114 (129)
182 2kck_A TPR repeat; tetratricop 98.0 4.9E-05 1.7E-09 59.6 10.6 96 542-641 5-104 (112)
183 3q49_B STIP1 homology and U bo 98.0 7.9E-05 2.7E-09 61.2 12.1 100 577-678 8-109 (137)
184 1hxi_A PEX5, peroxisome target 97.9 5.8E-05 2E-09 60.4 9.8 90 547-640 21-111 (121)
185 3ro3_A PINS homolog, G-protein 97.9 5.1E-05 1.8E-09 64.4 10.2 96 545-640 51-155 (164)
186 1wao_1 Serine/threonine protei 97.9 9.9E-05 3.4E-09 75.3 13.4 117 483-602 12-134 (477)
187 2if4_A ATFKBP42; FKBP-like, al 97.9 1.9E-05 6.4E-10 76.7 7.5 109 579-690 180-308 (338)
188 1na3_A Designed protein CTPR2; 97.8 3E-05 1E-09 58.3 6.4 78 614-691 9-88 (91)
189 1ihg_A Cyclophilin 40; ppiase 97.8 3.5E-05 1.2E-09 75.6 8.4 120 543-664 223-359 (370)
190 3lvg_A Clathrin heavy chain 1; 97.8 1.8E-06 6.1E-11 82.9 -0.9 455 75-600 52-534 (624)
191 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 8.8E-05 3E-09 75.4 11.2 127 511-641 267-413 (457)
192 1klx_A Cysteine rich protein B 97.8 0.00023 7.9E-09 58.4 11.0 120 557-687 9-136 (138)
193 1zu2_A Mitochondrial import re 97.7 2.4E-05 8.3E-10 64.3 4.5 106 555-686 14-131 (158)
194 3rkv_A Putative peptidylprolyl 97.7 0.00021 7.1E-09 60.7 10.4 95 545-641 13-124 (162)
195 2l6j_A TPR repeat-containing p 97.7 6.7E-05 2.3E-09 58.8 6.6 92 577-670 3-102 (111)
196 3k9i_A BH0479 protein; putativ 97.7 7E-05 2.4E-09 59.5 6.7 63 543-607 27-90 (117)
197 1ihg_A Cyclophilin 40; ppiase 97.7 0.00024 8.2E-09 69.7 11.4 140 477-636 223-363 (370)
198 2l6j_A TPR repeat-containing p 97.7 6.6E-05 2.2E-09 58.9 5.9 95 542-641 3-105 (111)
199 1dce_A Protein (RAB geranylger 97.6 0.00021 7.2E-09 74.3 11.2 181 494-679 46-271 (567)
200 2hr2_A Hypothetical protein; a 97.6 0.00022 7.4E-09 58.8 9.0 60 545-606 59-130 (159)
201 3ly7_A Transcriptional activat 97.5 0.003 1E-07 60.0 15.3 147 540-689 191-352 (372)
202 3ma5_A Tetratricopeptide repea 97.4 0.0005 1.7E-08 52.6 8.2 82 541-624 5-87 (100)
203 2kat_A Uncharacterized protein 97.4 0.00025 8.7E-09 56.0 6.5 77 561-641 3-80 (115)
204 2kc7_A BFR218_protein; tetratr 97.4 0.00019 6.6E-09 54.8 5.1 88 584-681 6-96 (99)
205 3n71_A Histone lysine methyltr 97.4 0.0011 3.8E-08 67.1 11.7 61 580-640 353-419 (490)
206 2kat_A Uncharacterized protein 97.3 0.0007 2.4E-08 53.3 8.0 65 540-606 16-81 (115)
207 1klx_A Cysteine rich protein B 97.3 0.0058 2E-07 49.8 13.3 108 458-606 10-125 (138)
208 1zu2_A Mitochondrial import re 97.2 0.00036 1.2E-08 57.4 5.3 91 526-621 16-131 (158)
209 1na3_A Designed protein CTPR2; 97.2 0.0022 7.7E-08 47.6 9.7 80 544-627 10-90 (91)
210 3n71_A Histone lysine methyltr 97.2 0.0024 8.2E-08 64.6 12.6 125 328-505 334-463 (490)
211 3lvg_A Clathrin heavy chain 1; 97.2 4.5E-05 1.5E-09 73.5 -0.2 417 40-507 52-510 (624)
212 3ma5_A Tetratricopeptide repea 97.2 0.00029 9.9E-09 53.9 4.5 63 577-641 6-68 (100)
213 2v5f_A Prolyl 4-hydroxylase su 97.1 0.00094 3.2E-08 51.4 6.6 71 617-687 8-87 (104)
214 2kc7_A BFR218_protein; tetratr 97.1 0.00039 1.4E-08 53.0 4.0 80 549-641 6-88 (99)
215 3bee_A Putative YFRE protein; 96.9 0.0041 1.4E-07 46.3 8.1 70 611-680 3-77 (93)
216 3qww_A SET and MYND domain-con 96.9 0.0031 1.1E-07 62.6 9.5 37 648-684 384-425 (433)
217 3qwp_A SET and MYND domain-con 96.8 0.0053 1.8E-07 61.1 10.4 56 550-605 294-356 (429)
218 1pc2_A Mitochondria fission pr 96.6 0.0036 1.2E-07 50.9 6.2 72 612-683 30-108 (152)
219 3ly7_A Transcriptional activat 96.5 0.13 4.3E-06 49.0 16.5 150 441-619 192-348 (372)
220 1nzn_A CGI-135 protein, fissio 96.2 0.053 1.8E-06 42.2 10.5 92 592-685 15-113 (126)
221 3mkq_A Coatomer beta'-subunit; 96.2 0.32 1.1E-05 53.4 21.3 153 454-641 610-763 (814)
222 3mkq_B Coatomer subunit alpha; 96.1 0.38 1.3E-05 40.1 15.7 129 520-672 13-141 (177)
223 3bee_A Putative YFRE protein; 96.1 0.06 2E-06 39.9 10.0 65 540-606 3-71 (93)
224 3mkq_A Coatomer beta'-subunit; 96.0 0.15 5.2E-06 56.1 17.4 123 283-430 633-755 (814)
225 3qww_A SET and MYND domain-con 95.8 0.028 9.6E-07 55.8 9.2 62 545-606 342-410 (433)
226 1wy6_A Hypothetical protein ST 95.8 0.21 7.2E-06 38.9 11.6 57 518-574 97-156 (172)
227 3qwp_A SET and MYND domain-con 95.7 0.063 2.2E-06 53.4 11.2 88 519-606 294-399 (429)
228 4ady_A RPN2, 26S proteasome re 95.4 3.8 0.00013 44.4 32.8 248 420-673 383-656 (963)
229 3u64_A Protein TP_0956; tetrat 95.3 1.2 4E-05 40.7 16.7 137 526-672 135-295 (301)
230 4ady_A RPN2, 26S proteasome re 95.2 4.4 0.00015 43.9 37.2 307 318-629 382-721 (963)
231 1pc2_A Mitochondria fission pr 95.2 0.13 4.4E-06 41.8 9.2 80 559-641 14-98 (152)
232 2v5f_A Prolyl 4-hydroxylase su 94.9 0.15 5.1E-06 38.7 8.7 60 581-640 8-72 (104)
233 3ffl_A Anaphase-promoting comp 94.0 0.33 1.1E-05 39.7 9.0 40 615-654 123-163 (167)
234 1wy6_A Hypothetical protein ST 93.9 1.8 6E-05 33.9 13.5 62 613-674 90-153 (172)
235 1y8m_A FIS1; mitochondria, unk 93.4 0.44 1.5E-05 37.8 8.4 73 611-683 36-114 (144)
236 3u64_A Protein TP_0956; tetrat 92.8 0.73 2.5E-05 42.0 10.1 71 544-617 200-280 (301)
237 3mkq_B Coatomer subunit alpha; 92.8 3.7 0.00013 34.2 16.2 126 489-641 17-142 (177)
238 3lpz_A GET4 (YOR164C homolog); 92.6 6.7 0.00023 36.7 19.8 168 180-369 37-215 (336)
239 3o48_A Mitochondria fission 1 92.6 0.33 1.1E-05 37.9 6.6 72 612-683 38-115 (134)
240 1qsa_A Protein (soluble lytic 92.2 12 0.00041 38.8 25.9 252 413-674 74-347 (618)
241 3ffl_A Anaphase-promoting comp 92.0 0.59 2E-05 38.2 7.7 134 547-691 24-166 (167)
242 4gns_B Protein CSD3, chitin bi 92.0 0.66 2.2E-05 49.1 10.2 53 550-604 344-397 (754)
243 4b4t_P 26S proteasome regulato 92.0 10 0.00036 37.6 18.5 96 545-640 139-244 (445)
244 4h7y_A Dual specificity protei 91.9 3.2 0.00011 33.2 11.4 56 122-178 74-129 (161)
245 1zbp_A Hypothetical protein VP 91.7 1.5 5E-05 39.3 10.5 127 551-684 5-138 (273)
246 2wpv_A GET4, UPF0363 protein Y 91.3 9.1 0.00031 35.5 20.4 167 180-368 35-215 (312)
247 4b4t_P 26S proteasome regulato 90.8 14 0.00047 36.7 18.6 253 55-307 29-323 (445)
248 1nzn_A CGI-135 protein, fissio 89.9 2 6.9E-05 33.4 8.6 79 560-641 18-101 (126)
249 1v54_E Cytochrome C oxidase po 88.9 1.8 6E-05 31.7 6.9 62 559-622 26-87 (109)
250 2ff4_A Probable regulatory pro 88.7 2.7 9.4E-05 40.9 10.9 72 546-619 174-250 (388)
251 4h7y_A Dual specificity protei 88.3 8.7 0.0003 30.8 12.5 49 557-606 74-122 (161)
252 1v54_E Cytochrome C oxidase po 86.5 3.4 0.00012 30.3 7.1 59 26-85 29-87 (109)
253 3ltj_A Alpharep-4; protein eng 86.3 15 0.00051 31.4 15.7 80 41-124 27-106 (201)
254 4gns_B Protein CSD3, chitin bi 86.3 14 0.00049 39.1 15.1 55 150-205 344-398 (754)
255 2p58_C Putative type III secre 85.9 8 0.00027 28.2 8.7 80 156-239 20-99 (116)
256 2uwj_G Type III export protein 85.2 7.5 0.00026 28.3 8.3 86 157-247 20-105 (115)
257 3txn_A 26S proteasome regulato 85.1 28 0.00097 33.6 15.6 127 479-605 21-166 (394)
258 2wpv_A GET4, UPF0363 protein Y 84.2 26 0.0009 32.4 19.3 165 315-505 38-216 (312)
259 2y69_E Cytochrome C oxidase su 83.6 4.8 0.00016 31.3 7.2 60 561-622 71-130 (152)
260 2ff4_A Probable regulatory pro 82.5 7.1 0.00024 38.0 10.3 69 448-516 176-249 (388)
261 3o48_A Mitochondria fission 1 81.0 8.6 0.00029 30.1 8.0 43 561-605 61-105 (134)
262 4fhn_B Nucleoporin NUP120; pro 81.0 30 0.001 39.3 16.1 161 415-593 816-986 (1139)
263 2y69_E Cytochrome C oxidase su 80.2 7.3 0.00025 30.4 7.1 83 36-118 45-132 (152)
264 4fhn_B Nucleoporin NUP120; pro 78.4 35 0.0012 38.8 15.6 161 80-258 815-985 (1139)
265 3lpz_A GET4 (YOR164C homolog); 76.6 50 0.0017 30.9 21.5 165 315-505 40-215 (336)
266 3ltm_A Alpha-REP4; protein eng 76.1 37 0.0013 29.1 17.2 146 82-236 38-183 (211)
267 3txn_A 26S proteasome regulato 75.2 61 0.0021 31.2 20.9 93 413-505 21-127 (394)
268 3ltm_A Alpha-REP4; protein eng 73.2 44 0.0015 28.6 19.4 61 540-605 123-183 (211)
269 4b4t_R RPN7, 26S proteasome re 72.0 14 0.00046 36.6 9.0 107 513-620 132-249 (429)
270 1y8m_A FIS1; mitochondria, unk 70.0 39 0.0013 26.8 11.3 56 548-605 44-104 (144)
271 1n11_A Ankyrin; clathrin, BAND 67.2 98 0.0033 30.3 14.7 51 49-103 18-70 (437)
272 1zbp_A Hypothetical protein VP 66.6 64 0.0022 29.0 10.9 51 455-505 9-59 (273)
273 3ltj_A Alpharep-4; protein eng 66.3 60 0.002 27.5 17.5 58 410-469 120-177 (201)
274 3esl_A Checkpoint serine/threo 63.6 69 0.0023 27.2 10.4 83 530-614 62-150 (202)
275 1k1a_A B-cell lymphoma 3-encod 63.4 75 0.0026 27.6 13.9 152 49-206 13-175 (241)
276 1wdy_A 2-5A-dependent ribonucl 60.7 58 0.002 29.3 10.6 53 47-103 7-62 (285)
277 4b4t_R RPN7, 26S proteasome re 59.3 47 0.0016 32.7 10.0 95 477-571 131-236 (429)
278 3eiq_C Programmed cell death p 58.7 1.2E+02 0.0043 28.6 13.3 112 515-641 220-337 (358)
279 2p58_C Putative type III secre 56.9 55 0.0019 24.0 10.2 87 392-483 23-109 (116)
280 2uwj_G Type III export protein 55.6 58 0.002 23.8 9.5 87 392-483 22-108 (115)
281 3kea_A K1L; tropism, ANK repea 53.7 46 0.0016 30.4 8.5 15 363-377 210-224 (285)
282 3bqo_A Telomeric repeat-bindin 52.8 35 0.0012 28.6 6.3 44 594-639 94-142 (211)
283 3jxi_A Vanilloid receptor-rela 50.5 26 0.00091 31.3 6.2 89 118-206 12-118 (260)
284 3eiq_C Programmed cell death p 49.7 1.7E+02 0.006 27.6 14.9 68 446-513 220-289 (358)
285 3eu9_A Huntingtin-interacting 48.8 54 0.0019 28.5 8.0 21 83-103 45-65 (240)
286 3eu9_A Huntingtin-interacting 48.1 70 0.0024 27.7 8.7 50 153-206 16-67 (240)
287 3ljn_A Hypothetical protein; a 48.1 64 0.0022 30.6 8.9 149 47-204 22-196 (364)
288 2zu6_B Programmed cell death p 43.5 2E+02 0.0068 26.5 13.6 68 446-513 169-238 (307)
289 3hra_A Ankyrin repeat family p 43.1 83 0.0028 26.4 8.0 58 186-243 111-172 (201)
290 3b7b_A Euchromatic histone-lys 42.9 1.4E+02 0.0047 25.8 9.7 205 50-272 16-235 (237)
291 1n11_A Ankyrin; clathrin, BAND 42.8 2.4E+02 0.0083 27.3 14.1 148 83-243 17-173 (437)
292 4b4t_S RPN3, 26S proteasome re 42.7 50 0.0017 33.0 6.9 25 617-641 234-258 (523)
293 2d2s_A Exocyst complex compone 42.7 82 0.0028 27.7 7.7 86 550-639 25-116 (235)
294 3b7b_A Euchromatic histone-lys 41.7 1.5E+02 0.0052 25.5 9.8 20 384-403 215-234 (237)
295 1wdy_A 2-5A-dependent ribonucl 41.5 1.9E+02 0.0065 25.7 13.2 117 82-207 7-131 (285)
296 4a1g_A Mitotic checkpoint seri 41.1 1.4E+02 0.0048 24.0 9.9 54 560-614 82-136 (152)
297 3jxi_A Vanilloid receptor-rela 40.0 50 0.0017 29.4 6.3 54 216-269 9-71 (260)
298 2ion_A PDCD4, programmed cell 39.9 1.3E+02 0.0044 24.2 7.9 66 313-378 12-82 (152)
299 2rfa_A Transient receptor pote 38.9 1.3E+02 0.0044 25.9 8.8 57 185-241 125-183 (232)
300 2nsz_A Programmed cell death p 38.4 1.4E+02 0.0047 23.2 8.8 62 515-576 10-76 (129)
301 3hra_A Ankyrin repeat family p 38.3 1.3E+02 0.0044 25.1 8.5 89 185-278 76-172 (201)
302 2ion_A PDCD4, programmed cell 37.7 1.3E+02 0.0043 24.3 7.5 62 515-576 12-78 (152)
303 1bd8_A P19INK4D CDK4/6 inhibit 37.5 1.3E+02 0.0044 23.7 8.0 17 51-67 8-24 (156)
304 2d2s_A Exocyst complex compone 37.3 2.1E+02 0.0073 25.1 9.7 23 347-369 24-46 (235)
305 2zu6_B Programmed cell death p 37.0 2.5E+02 0.0086 25.8 13.7 57 181-237 6-66 (307)
306 3bu8_A Telomeric repeat-bindin 36.8 1.2E+02 0.0041 25.9 7.2 20 586-605 122-141 (235)
307 2fu4_A Ferric uptake regulatio 36.3 1.1E+02 0.0036 21.2 7.7 63 233-296 6-69 (83)
308 3esl_A Checkpoint serine/threo 36.2 2E+02 0.0069 24.4 9.6 54 458-511 94-149 (202)
309 3kea_A K1L; tropism, ANK repea 35.9 2.4E+02 0.0083 25.3 10.7 15 188-202 136-150 (285)
310 2fu4_A Ferric uptake regulatio 35.3 1.1E+02 0.0037 21.2 6.2 59 133-192 7-66 (83)
311 4a1g_A Mitotic checkpoint seri 33.6 87 0.003 25.2 5.8 54 460-513 82-137 (152)
312 1qsa_A Protein (soluble lytic 33.6 4.2E+02 0.014 27.4 39.0 265 179-470 73-346 (618)
313 2wvi_A Mitotic checkpoint seri 33.5 2E+02 0.0067 23.5 10.1 55 560-615 77-132 (164)
314 3bqo_A Telomeric repeat-bindin 33.4 43 0.0015 28.1 4.0 46 559-606 94-145 (211)
315 4gq2_M Nucleoporin NUP120; bet 33.4 5.3E+02 0.018 28.5 14.2 53 82-135 815-867 (950)
316 2nsz_A Programmed cell death p 32.7 1.7E+02 0.0059 22.6 9.2 66 313-378 10-80 (129)
317 4aez_C MAD3, mitotic spindle c 32.2 2.5E+02 0.0085 24.3 8.8 53 560-613 131-184 (223)
318 1ug3_A EIF4GI, eukaryotic prot 31.3 1.7E+02 0.0058 27.5 8.5 20 449-468 147-166 (339)
319 3aji_A 26S proteasome non-ATPa 31.2 1.3E+02 0.0044 25.8 7.5 19 84-102 10-28 (231)
320 1k1a_A B-cell lymphoma 3-encod 29.9 2.6E+02 0.009 23.9 12.8 50 154-203 17-68 (241)
321 1oyz_A Hypothetical protein YI 29.0 3.1E+02 0.011 24.4 20.5 19 175-193 139-157 (280)
322 3ygs_P Procaspase 9; apoptosis 27.7 48 0.0017 24.2 3.2 37 91-127 51-87 (97)
323 1ug3_A EIF4GI, eukaryotic prot 27.0 2.3E+02 0.008 26.5 8.7 27 313-339 14-40 (339)
324 4ets_A Ferric uptake regulatio 26.7 2.5E+02 0.0086 22.7 7.7 70 226-296 14-86 (162)
325 3ljn_A Hypothetical protein; a 26.5 3.6E+02 0.012 25.1 10.3 49 187-235 59-107 (364)
326 4gq2_M Nucleoporin NUP120; bet 25.7 3E+02 0.01 30.5 10.4 33 648-680 899-932 (950)
327 1mzb_A Ferric uptake regulatio 25.5 2.4E+02 0.0082 22.0 7.8 62 234-296 8-70 (136)
328 2fe3_A Peroxide operon regulat 25.3 1.4E+02 0.0048 23.7 5.8 62 234-296 12-73 (145)
329 4b4t_S RPN3, 26S proteasome re 25.2 3.8E+02 0.013 26.9 9.8 27 513-539 232-258 (523)
330 2w57_A Ferric uptake regulatio 24.9 2.6E+02 0.009 22.2 7.7 63 233-296 6-69 (150)
331 3aji_A 26S proteasome non-ATPa 24.7 3.2E+02 0.011 23.2 11.8 145 49-204 10-162 (231)
332 1oyz_A Hypothetical protein YI 24.0 3.8E+02 0.013 23.8 20.9 26 432-457 57-82 (280)
333 2fe3_A Peroxide operon regulat 23.8 1.9E+02 0.0065 22.9 6.4 22 117-138 30-51 (145)
334 2pnn_A Transient receptor pote 23.6 1.5E+02 0.0052 26.4 6.6 189 213-401 14-255 (273)
335 2etb_A Transient receptor pote 23.6 1.2E+02 0.0042 26.6 5.9 189 213-401 3-243 (256)
336 3mwm_A ZUR, putative metal upt 23.5 64 0.0022 25.5 3.4 49 46-94 17-65 (139)
337 2p1h_A APAF-1, apoptotic prote 23.4 1.3E+02 0.0043 21.7 4.8 63 61-127 24-86 (94)
338 4aez_C MAD3, mitotic spindle c 23.1 3.7E+02 0.013 23.3 9.0 46 595-641 131-177 (223)
339 2o03_A Probable zinc uptake re 22.3 68 0.0023 25.0 3.3 46 46-91 14-59 (131)
340 2fv2_A RCD1 required for cell 21.4 2.2E+02 0.0074 25.4 6.4 59 583-641 178-236 (268)
341 3ygs_P Procaspase 9; apoptosis 21.1 1E+02 0.0036 22.4 3.9 37 192-228 51-87 (97)
342 4hbd_A KN motif and ankyrin re 21.1 1.7E+02 0.0058 26.3 6.4 13 89-101 120-132 (276)
343 2qx5_A Nucleoporin NIC96; mRNA 21.1 7.2E+02 0.025 25.9 21.0 337 284-644 157-568 (661)
344 3bu8_A Telomeric repeat-bindin 20.6 4E+02 0.014 22.9 7.5 44 528-571 88-142 (235)
345 3t8k_A Uncharacterized protein 20.2 1.6E+02 0.0055 24.5 5.6 15 563-577 133-148 (186)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.4e-41 Score=360.04 Aligned_cols=495 Identities=8% Similarity=-0.067 Sum_probs=409.9
Q ss_pred hhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHH
Q 043637 188 YGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIH 267 (693)
Q Consensus 188 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 267 (693)
+.+.|....+...+..++.+++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.++...|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 34566677777778887778888899999999999999999999999985 5678888899999999999999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCC-------------------CchhHHHHHHHHHhcCCHHH
Q 043637 268 GVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDER-------------------NIISWTSIVSGYAISGRIRE 328 (693)
Q Consensus 268 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 328 (693)
+.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 877543 678889999999999999999999999965443 36789999999999999999
Q ss_pred HHHHHhhCCC--CC-cccHHHHHHHHHhCCCHHHHH--HH-HHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHH
Q 043637 329 ARELFNEMPE--RN-VISWNAMLAGYTRSLLWKEAL--DF-VFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFI 402 (693)
Q Consensus 329 A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~--~~-~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 402 (693)
|.+.|+++.+ |+ ...+..+...+...+..+.+. .+ +..+...+..+...+|..++..+.+.|++++|.++++.+
T Consensus 219 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 219 AKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence 9999999876 32 334444444443333222221 11 455555555556667777788899999999999999998
Q ss_pred HHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC--CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHH
Q 043637 403 HRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ--RRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTF 480 (693)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~ 480 (693)
.+. +++..+++.++.+|.+.|++++|...+.++.. ..+..+|+.++.++.+.|++++|.++++++....+.+..++
T Consensus 299 ~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 376 (597)
T 2xpi_A 299 NGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTW 376 (597)
T ss_dssp TTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred hcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHH
Confidence 766 58899999999999999999999999998875 34778899999999999999999999999986667789999
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCC
Q 043637 481 ETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNE 557 (693)
Q Consensus 481 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g 557 (693)
..++..|.+.|++++|.++|+++.+.... +..++..++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 455 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG 455 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC
Confidence 99999999999999999999999986543 67799999999999999999999999865 568889999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCC--hhHHHHHHHHHHhcCChH
Q 043637 558 RGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKY---GIIPQ--LEHYECMIKLYCRYGYMK 631 (693)
Q Consensus 558 ~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~ 631 (693)
++++|.++|+++.+. .| +..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|+++
T Consensus 456 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 533 (597)
T 2xpi_A 456 NILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533 (597)
T ss_dssp CHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH
Confidence 999999999999984 44 57899999999999999999999999998632 66787 789999999999999999
Q ss_pred HHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhccc
Q 043637 632 ELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 632 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
+|+..++++. .+.+...|..++..|...|++++|...++++++++|+++.++..|+++|.
T Consensus 534 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 534 AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999885 45678899999999999999999999999999999999999999999986
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-38 Score=341.26 Aligned_cols=497 Identities=8% Similarity=-0.067 Sum_probs=318.1
Q ss_pred HHhccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHH
Q 043637 86 CYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQL 165 (693)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 165 (693)
.+.+.|.+..+...+..++.++...|+.++..+.+.|++++|+.+|++|.+ ..|+..++..++..|...|+++.|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 345677888888888888888899999999999999999999999999985 467889999999999999999999999
Q ss_pred HHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCC-------------------CcccHHHHHHHHHhcCCch
Q 043637 166 HGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNK-------------------NAVSWNVIVRRYLVAGNGK 226 (693)
Q Consensus 166 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~ 226 (693)
++.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9987643 678899999999999999999999999965433 3678999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCH-HhHHHHHHHhcCCCCcchhH--HH-HHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhh
Q 043637 227 EAVVMFFKMLREDIRPLN-FTFANALFACSFLSSPYEGM--QI-HGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLL 302 (693)
Q Consensus 227 ~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 302 (693)
+|+++|++|.+.+ |+. ..+..+...+...+....+. .+ +..+...+..+...+|+.++..|.+.|+++
T Consensus 218 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------ 289 (597)
T 2xpi_A 218 RAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELR------ 289 (597)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHH------
T ss_pred HHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHH------
Confidence 9999999998753 433 34444444333332211111 01 222222233333334444444444444444
Q ss_pred cCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHH
Q 043637 303 DQPDERNIISWTSIVSGYAISGRIREARELFNEMPE--RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLG 380 (693)
Q Consensus 303 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 380 (693)
+|.++|+.+.+ ++..+|+.++.+|.+.|++++|..+|+++.+.+. .+..++.
T Consensus 290 -------------------------~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 343 (597)
T 2xpi_A 290 -------------------------RAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYP 343 (597)
T ss_dssp -------------------------HHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHH
T ss_pred -------------------------HHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHH
Confidence 66666666655 5666677777777777777777777777765542 2455566
Q ss_pred HHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC--CCChhhHHHHHHHHHhcCC
Q 043637 381 LILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ--RRDKVSWNAVLTGYARRGQ 458 (693)
Q Consensus 381 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 458 (693)
.++.++...|+.++|..+++.+.+.. +.+..++..++.+|.+.|++++|...+.++.. ..+..+|+.++..|.+.|+
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 422 (597)
T 2xpi_A 344 LHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE 422 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 66666666666666666666665432 44566666677777777777777666666543 2345567777777777777
Q ss_pred hHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcC
Q 043637 459 SEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKES 538 (693)
Q Consensus 459 ~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 538 (693)
+++|+++|+++....+.+..++..++.+|.+.|++++|.++|+++.+...
T Consensus 423 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------------------ 472 (597)
T 2xpi_A 423 HDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ------------------------------ 472 (597)
T ss_dssp HHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC------------------------------
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------------------------
Confidence 77777777776665555566666666666666666666666666655432
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 043637 539 SSLDVIICNSMILGFCHNERGREALEVFGLMKKE----GIKPD--HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP 612 (693)
Q Consensus 539 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 612 (693)
.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+. .+.
T Consensus 473 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~ 548 (597)
T 2xpi_A 473 --YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--STN 548 (597)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSC
T ss_pred --CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCC
Confidence 34455556666666666666666666666553 44565 456666666677777777777777666642 233
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHH
Q 043637 613 QLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDK 655 (693)
Q Consensus 613 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 655 (693)
+..+|..++.+|.+.|++++|.+.++++. .+.+...+..+...
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 56666666667777777777776666664 23344444444433
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.9e-26 Score=233.09 Aligned_cols=368 Identities=9% Similarity=0.001 Sum_probs=303.4
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC--CC-cccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchh
Q 043637 317 VSGYAISGRIREARELFNEMPE--RN-VISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIK 393 (693)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 393 (693)
...+.+.|++++|.+.+..+.+ |+ ...+..+...+...|++++|...++...+.. +.+...+..+...+...|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 3455566666677777766543 33 3455556667777888888888887776642 446667777778888888888
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC-CC-ChhhHHHHHHHHHhcCChHHHHHHHHHhhh
Q 043637 394 MGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ-RR-DKVSWNAVLTGYARRGQSEEAMTSFSEMQW 471 (693)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 471 (693)
+|...++.+.+.. +.+...+..+..++.+.|++++|...+.+.+. .| +...+..+...+...|++++|.+.|+++..
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888888877653 44556788888888888998888888887765 34 445677778888888999999999999887
Q ss_pred CCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHH
Q 043637 472 ETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNS 548 (693)
Q Consensus 472 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ 548 (693)
..+.+..++..+...+...|++++|...++++.+.++. +...+..+...+...|++++|...+++.. +.+..++..
T Consensus 164 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 242 (388)
T 1w3b_A 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHH
Confidence 76777888999999999999999999999999886654 56778888899999999999999998765 556789999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRY 627 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 627 (693)
+...+...|++++|++.++++.+ ..|+ ..+|..+..++.+.|++++|...++++.+ ..+.+...+..++..+.+.
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHc
Confidence 99999999999999999999999 5675 57899999999999999999999999986 3566788999999999999
Q ss_pred CChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhccc
Q 043637 628 GYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 628 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
|++++|+..++++. .+.+...+..++..+...|++++|...++++++++|+++.++..++++|.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHH
Confidence 99999999999886 35567789999999999999999999999999999999999999998874
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=2.1e-27 Score=242.96 Aligned_cols=184 Identities=11% Similarity=0.034 Sum_probs=161.0
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCC---------hHHHHHHHHHHHHhCCCCchhh
Q 043637 110 SWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELE---------LGVSKQLHGLIVKRGFCGNVIL 180 (693)
Q Consensus 110 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~~ 180 (693)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+. ++.|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4777888888888888888888888888888888888888888876543 5778888888888888888888
Q ss_pred HhHHHHHhhcCCCHHHHHHHHhccC----CCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcC
Q 043637 181 ESSLVDAYGKCMVMTDARRMFDDIQ----NKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSF 256 (693)
Q Consensus 181 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 256 (693)
|++||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 8888888888888888888888886 478888999999999999999999999999999999999999999999999
Q ss_pred CCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcC
Q 043637 257 LSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCG 293 (693)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 293 (693)
.|++++|.+++++|.+.|..|+..||+.++..|...+
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999998887643
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=9e-27 Score=238.24 Aligned_cols=213 Identities=12% Similarity=0.133 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHcCCCCCH-hhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhh
Q 043637 359 EALDFVFLMRKTTKDIDQ-VTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQM 437 (693)
Q Consensus 359 ~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 437 (693)
.+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.|++||..+|+.+|.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 344556666666665543 356777888888888888888888888888888888888888888777665443
Q ss_pred cCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHH
Q 043637 438 SQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWET-RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRG 516 (693)
Q Consensus 438 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 516 (693)
.+.+..++|.++|++|...| .||..||+++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P------ 138 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP------ 138 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC------
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------
Confidence 12344678899999999999 9999999999999999999999999999999888874
Q ss_pred HHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHH
Q 043637 517 ALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKL 596 (693)
Q Consensus 517 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 596 (693)
|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.||.+|++.|++++
T Consensus 139 -------------------------d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~ 193 (501)
T 4g26_A 139 -------------------------RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADK 193 (501)
T ss_dssp -------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred -------------------------ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHH
Confidence 5555666667777777778888888888888888888888888888888888888
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 043637 597 ALQFFDSMRCKYGIIPQLEHYECMIKLYCR 626 (693)
Q Consensus 597 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 626 (693)
|.+++++|.+ .+..|+..+|+.++..|+.
T Consensus 194 A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 194 VYKTLQRLRD-LVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHH-HTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHH-hCCCcCHHHHHHHHHHHhc
Confidence 8888888876 4888888888888777765
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=2.7e-24 Score=217.28 Aligned_cols=366 Identities=10% Similarity=0.018 Sum_probs=279.1
Q ss_pred HHHHcCChhHHHhhhcCCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCHHHHH
Q 043637 288 MYVKCGRLEDARGLLDQPDE--R-NIISWTSIVSGYAISGRIREARELFNEMPE---RNVISWNAMLAGYTRSLLWKEAL 361 (693)
Q Consensus 288 ~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 361 (693)
.+.+.|++++|...++++.+ | +...+..+...+...|++++|...++...+ .+..+|..+...+.+.|++++|+
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 34445555555555544322 2 223444445555555666666666655543 34567777888888888888888
Q ss_pred HHHHHHHHcCCCCC-HhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC-
Q 043637 362 DFVFLMRKTTKDID-QVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ- 439 (693)
Q Consensus 362 ~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 439 (693)
..|+++.+. .|+ ...+..+..++...|++++|.+.++.+.+.. +.+...+..+...+...|++++|...+.+++.
T Consensus 88 ~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 88 EHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 888887764 343 4467777778888888888888888877654 33455667777888888899998888887765
Q ss_pred CC-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHH
Q 043637 440 RR-DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGAL 518 (693)
Q Consensus 440 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 518 (693)
.| +..+|..+...+...|++++|.+.|+++....+.+...+..+...+...|++++|...+++.....+. +..++..+
T Consensus 165 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 243 (388)
T 1w3b_A 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNL 243 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHH
Confidence 23 56788888889999999999999999988777777888888889999999999999999988886543 56778888
Q ss_pred HHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHH
Q 043637 519 VEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVK 595 (693)
Q Consensus 519 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 595 (693)
..+|.+.|++++|...++++. +.+..+|..+...+.+.|++++|.+.++++.+. .+++..++..+...+...|+++
T Consensus 244 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHH
Confidence 999999999999999998865 456778999999999999999999999999984 2335688999999999999999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcC
Q 043637 596 LALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNG 660 (693)
Q Consensus 596 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 660 (693)
+|...++++.+ ..+.+...+..++.+|.+.|++++|+..++++. .+.+...+..+...+...|
T Consensus 323 ~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 323 EAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 99999999974 344567788999999999999999999998874 3445667777777766554
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.4e-23 Score=216.53 Aligned_cols=261 Identities=7% Similarity=-0.099 Sum_probs=194.1
Q ss_pred cCChHHHHHHHHhhcC--------CC--------ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHh
Q 043637 424 CGNLRSARIWFYQMSQ--------RR--------DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAAC 487 (693)
Q Consensus 424 ~~~~~~a~~~~~~~~~--------~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~ 487 (693)
.|++++|...+.+.+. .| +..++..+...+...|++++|...|+++....+. ...+..+..++
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~ 280 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIM 280 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHH
Confidence 5666666666666554 11 2345666777777888888888888877665533 77777777788
Q ss_pred cccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHH
Q 043637 488 ANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALE 564 (693)
Q Consensus 488 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~ 564 (693)
...|++++|...++.+.+.... +...+..+..+|...|++++|...+++.. +.+...+..+...+...|++++|..
T Consensus 281 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 359 (514)
T 2gw1_A 281 ADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCET 359 (514)
T ss_dssp HTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888887765433 45667777788888888888888887654 4556778888888888888888888
Q ss_pred HHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHh---cCChHHHHHH
Q 043637 565 VFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ----LEHYECMIKLYCR---YGYMKELEDF 636 (693)
Q Consensus 565 ~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~ 636 (693)
.++++.+ ..| +...+..+...+...|++++|...++++.+.....++ ...+..++..|.+ .|++++|...
T Consensus 360 ~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~ 437 (514)
T 2gw1_A 360 LFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437 (514)
T ss_dssp HHHHHHH--HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHH
T ss_pred HHHHHHH--HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 8888887 345 4577778888888888888888888888753222232 3377888888888 8888888888
Q ss_pred HHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhh
Q 043637 637 VNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTN 688 (693)
Q Consensus 637 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 688 (693)
++++. .+.+...+..++..+...|++++|...++++++++|+++.....+..
T Consensus 438 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 88774 45566777888888888888889998899888888887777665543
No 8
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.91 E-value=2.2e-18 Score=186.05 Aligned_cols=639 Identities=10% Similarity=0.061 Sum_probs=387.6
Q ss_pred HHHhhhcCCCCCCCCchhhhHHHhhhccCCCCCChhHHHHHHHHhhcCccHHHHHHHHHHHH------------HhCCC-
Q 043637 8 ILKNILSKSSPKPTPSKTLTKTISGHLKSDEPVSYSLYAHLFQLCASSKAIVEARKLESNLV------------TFYPT- 74 (693)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~------------~~~~~- 74 (693)
.+.++.+-+.+ |+.+++++.....++..| ++|..-=..+++.-..+|+.+....++.+-+ ..++.
T Consensus 397 ti~rfk~~~~~-pgq~~pll~YF~~ll~~g-~Ln~~eSlEl~r~vl~q~r~~lle~Wl~e~KL~~SEeLGDlv~~~d~~l 474 (1630)
T 1xi4_A 397 TIRRFQSVPAQ-PGQTSPLLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTL 474 (1630)
T ss_pred HHHHHHcCCCC-CCCCCHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHhchHHHHHHHHHhCCccccHHHHHHHHhcChHH
Confidence 34455555533 334445555555566665 6666555566666666666655544443221 00000
Q ss_pred -----CCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHH
Q 043637 75 -----PPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANV 149 (693)
Q Consensus 75 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 149 (693)
....+...++.++++.|+++++...-++.. ....|..|++.+.+. +++.|.++...+.+.. |.......+
T Consensus 475 Al~iY~~a~~~~Kvi~~l~~~gq~~ki~~Y~~~~~--~~pDy~~ll~~~~~~-~P~~~~~fa~~L~~~~--~p~~d~~~i 549 (1630)
T 1xi4_A 475 ALSVYLRANVPNKVIQCFAETGQVQKIVLYAKKVG--YTPDWIFLLRNVMRI-SPDQGQQFAQMLVQDE--EPLADITQI 549 (1630)
T ss_pred HHHHHHhcCCcHHHHHHHHHhCCHHHHHHHHhccC--CCccHHHHHHHHhhc-ChHHHHHHHHHHhcCC--CCccCHHHH
Confidence 112223567777777788887777765432 245677888887755 5788888777776653 234457778
Q ss_pred HHHhhccCChHHHHHHHHHHHHhCCCCchhh-----------------------------HhHHHHHhhcCCCHHHHHHH
Q 043637 150 LRSSAEELELGVSKQLHGLIVKRGFCGNVIL-----------------------------ESSLVDAYGKCMVMTDARRM 200 (693)
Q Consensus 150 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-----------------------------~~~l~~~~~~~g~~~~A~~~ 200 (693)
+..+...+...++..++-+..+.+-+.+... +..+...|-+.|-++.|++.
T Consensus 550 vd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~ 629 (1630)
T 1xi4_A 550 VDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEH 629 (1630)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHh
Confidence 8888888888888888877777664322222 23344555566666666666
Q ss_pred HhccCC-------CCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHh
Q 043637 201 FDDIQN-------KNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKI 273 (693)
Q Consensus 201 ~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 273 (693)
+..+.. .....-..++..+.+ =+.+.+++.+++|...+++-+......+..-+...=..+....+|+.-...
T Consensus 630 y~d~~dikR~~~~~~~~~~~~l~~~fg~-l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~ 708 (1630)
T 1xi4_A 630 FTDLYDIKRAVVHTHLLNPEWLVNYFGS-LSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSF 708 (1630)
T ss_pred cCCHHHHHHHhhccCcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcch
Confidence 654431 111122233333333 345666666666665544444332222222222222233344444443321
Q ss_pred -----------cCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCC---------------CCc-----------------
Q 043637 274 -----------DFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDE---------------RNI----------------- 310 (693)
Q Consensus 274 -----------g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------------~~~----------------- 310 (693)
....|..+....|.+.++.|++.+.+++.++-.- +|.
T Consensus 709 egl~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~ 788 (1630)
T 1xi4_A 709 EGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLV 788 (1630)
T ss_pred hhHHHHHHhhccccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHH
Confidence 1345778888999999999999999888653210 000
Q ss_pred --------------------------------------------------------------------------------
Q 043637 311 -------------------------------------------------------------------------------- 310 (693)
Q Consensus 311 -------------------------------------------------------------------------------- 310 (693)
T Consensus 789 ~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~ 868 (1630)
T 1xi4_A 789 LYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHE 868 (1630)
T ss_pred HHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence
Q ss_pred -----hhHHHHHHHHHhcCC-HHH------------------------H-------------------------------
Q 043637 311 -----ISWTSIVSGYAISGR-IRE------------------------A------------------------------- 329 (693)
Q Consensus 311 -----~~~~~li~~~~~~g~-~~~------------------------A------------------------------- 329 (693)
.++|+|++.|...++ .++ |
T Consensus 869 g~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv 948 (1630)
T 1xi4_A 869 GCEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLV 948 (1630)
T ss_pred CCCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHH
Confidence 013334333332221 111 0
Q ss_pred ----HHHHhhCCC---------------------CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCCHhhHHHH
Q 043637 330 ----RELFNEMPE---------------------RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTK--DIDQVTLGLI 382 (693)
Q Consensus 330 ----~~~~~~~~~---------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l 382 (693)
.+++..... .++.--...+.+|...|.+.+|++++++..-.+- .-+...-+.+
T Consensus 949 ~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlL 1028 (1630)
T 1xi4_A 949 RRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLL 1028 (1630)
T ss_pred HhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHH
Confidence 111111100 1111223445667777888888888887763321 0111222223
Q ss_pred HHHH---------------------------hcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHH
Q 043637 383 LNVC---------------------------AGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFY 435 (693)
Q Consensus 383 l~~~---------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 435 (693)
+.+. ...|.+++|..+|++.. ......+.+ +...+++++|.+...
T Consensus 1029 i~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Ae 1100 (1630)
T 1xi4_A 1029 ILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAE 1100 (1630)
T ss_pred HHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHH
Confidence 3222 22333334444433321 000001111 113444444433333
Q ss_pred hhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHH
Q 043637 436 QMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCR 515 (693)
Q Consensus 436 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 515 (693)
+. .+..+|..+..++.+.|++++|++.|.+. .+...|..++.+|.+.|++++|.+++...++... ++...
T Consensus 1101 rv---n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Id 1170 (1630)
T 1xi4_A 1101 RC---NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVE 1170 (1630)
T ss_pred hc---CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--ccccc
Confidence 22 34667888888888899999998888663 5667788888889999999999998888777553 33333
Q ss_pred HHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHH
Q 043637 516 GALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVK 595 (693)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 595 (693)
+.++.+|++.+++++...+. ..++...|..+...|...|++++|..+|... ..|..+..++.+.|+++
T Consensus 1171 t~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q 1238 (1630)
T 1xi4_A 1171 TELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 1238 (1630)
T ss_pred HHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHH
Confidence 35888888888888655443 3456667777888888999999999888874 37888888888889999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhc
Q 043637 596 LALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNEL 675 (693)
Q Consensus 596 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 675 (693)
+|.+.+++.. +..+|..+..++...|++..|....... ..++..+..++..|...|.+++|+..+++.+.+
T Consensus 1239 ~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1239 AAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 9988888663 4577888888888889988888877653 334556668899999999999999999999999
Q ss_pred CCCCCcchhhhhhcccCC
Q 043637 676 NPWAPFQFKITTNRFDRY 693 (693)
Q Consensus 676 ~p~~~~~~~~l~~~y~~~ 693 (693)
+|.+.+.+..|+.+|++|
T Consensus 1310 eraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1310 ERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred ChhHhHHHHHHHHHHHhC
Confidence 999999999999999987
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.5e-21 Score=202.70 Aligned_cols=433 Identities=10% Similarity=-0.044 Sum_probs=247.2
Q ss_pred cHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhh
Q 043637 110 SWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYG 189 (693)
Q Consensus 110 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 189 (693)
.|......+.+.|++++|+..|+++.+.+ |+..+|..+..++...|+++.|...++.+.+.+ +.+..++..+..++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 34556667777777777777777777754 677777777777777788888887777777765 345567777777777
Q ss_pred cCCCHHHHHHHHhccCC---CCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHH
Q 043637 190 KCMVMTDARRMFDDIQN---KNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQI 266 (693)
Q Consensus 190 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 266 (693)
+.|++++|...|+.+.. .+......++..+........+.+.+..+...+..|+...+..-......
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------- 154 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK---------- 154 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh----------
Confidence 77777777777776642 23333444444444333333333333333322222222211110000000
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCC-CchhHHHHHHHHHh---cCCHHHHHHHHhhCCC----
Q 043637 267 HGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDER-NIISWTSIVSGYAI---SGRIREARELFNEMPE---- 338 (693)
Q Consensus 267 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~---- 338 (693)
....|+...... +.......... ..+..+ +...+......+.. .|++++|...|+++.+
T Consensus 155 ------~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 221 (514)
T 2gw1_A 155 ------QENLPSVTSMAS----FFGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEE 221 (514)
T ss_dssp --------CCCCHHHHHH----HHTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred ------ccCCchhHHHHH----HHhhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhh
Confidence 011111111111 11111111000 111112 22333333343443 6667777777665433
Q ss_pred -------------CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHh
Q 043637 339 -------------RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRN 405 (693)
Q Consensus 339 -------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 405 (693)
.+...+..+...+...|++++|...|+++.+.... ...+..+...+...|+++.|...++.+.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 299 (514)
T 2gw1_A 222 QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKL 299 (514)
T ss_dssp HTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT
T ss_pred hhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc
Confidence 12345666777788888888888888877765322 444444444444444444444444444332
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 043637 406 DYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLA 485 (693)
Q Consensus 406 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~ 485 (693)
. + .+..++..+...+...|++++|...+++.....+.+...+..+..
T Consensus 300 ~-~--------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 346 (514)
T 2gw1_A 300 D-S--------------------------------NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLAC 346 (514)
T ss_dssp C-T--------------------------------TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHH
T ss_pred C-c--------------------------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHH
Confidence 1 1 234455556666666666666777776666555445566666777
Q ss_pred HhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCC------HHHHHHHHHHHHh-
Q 043637 486 ACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLD------VIICNSMILGFCH- 555 (693)
Q Consensus 486 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~------~~~~~~l~~~~~~- 555 (693)
.+...|++++|...++.+.+.... +...+..+...+...|++++|...++++. +.+ ...|..+...+..
T Consensus 347 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 425 (514)
T 2gw1_A 347 LAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRN 425 (514)
T ss_dssp HTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhh
Confidence 777777777777777777664332 45566667777777777777777776654 111 3377788888888
Q ss_pred --CCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 556 --NERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 556 --~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
.|++++|.+.++++.+ ..|+ ..++..+..++...|++++|...++++.+
T Consensus 426 ~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 426 PTVENFIEATNLLEKASK--LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp CCTTHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8888888888888887 3453 56777788888888888888888888875
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=5.3e-21 Score=197.52 Aligned_cols=319 Identities=11% Similarity=-0.028 Sum_probs=226.5
Q ss_pred CcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 043637 340 NVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLD 419 (693)
Q Consensus 340 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 419 (693)
+...+..+...+.+.|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...++.+.+.+ +.+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 44567778888888888888888888887652 2345566666666666666666666666666553 334455555555
Q ss_pred HHHHcCChHHHHHHHHhhcCC-CC-h---hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChH
Q 043637 420 MYRKCGNLRSARIWFYQMSQR-RD-K---VSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLE 494 (693)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~-~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 494 (693)
+|.+.|++++|...+.+++.. |+ . ..+..++..+... .+..+...+...|+++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------------~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ----------------------RLRSQALNAFGSGDYT 160 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH----------------------HHHHHHHHHHHcCCHH
Confidence 566666666665555555442 21 2 3333332221100 0112233455667777
Q ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 043637 495 QGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKK 571 (693)
Q Consensus 495 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 571 (693)
+|...++.+.+.... +...+..+..+|.+.|++++|...++++. +.+..+|..++..+...|++++|+..|+++.+
T Consensus 161 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 161 AAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777776664432 55666677777777777777777777665 56677888899999999999999999999887
Q ss_pred CCCCCCh-HHHHHH------------HHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChHHH
Q 043637 572 EGIKPDH-ITFHGI------------LLACIHEGNVKLALQFFDSMRCKYGIIPQ-----LEHYECMIKLYCRYGYMKEL 633 (693)
Q Consensus 572 ~g~~p~~-~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A 633 (693)
+.|+. ..+..+ ...|...|++++|...++++.+. .|+ ...+..++.++.+.|++++|
T Consensus 240 --~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 240 --LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp --HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred --hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 56654 444444 78899999999999999999853 343 34788889999999999999
Q ss_pred HHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhh
Q 043637 634 EDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTN 688 (693)
Q Consensus 634 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 688 (693)
+..++++. .+.+...+..++.+|...|++++|...++++++++|+++..+..++.
T Consensus 315 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 315 IRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 99999875 45678899999999999999999999999999999999999888883
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=2e-20 Score=193.21 Aligned_cols=345 Identities=8% Similarity=-0.066 Sum_probs=228.4
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 043637 309 NIISWTSIVSGYAISGRIREARELFNEMPE---RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNV 385 (693)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 385 (693)
+...+..++..+.+.|++++|...|+.+.+ .+..+|..+..++...|++++|+..|+++.+.+ +.+...+..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 556888999999999999999999998765 467788999999999999999999999999864 3356788888999
Q ss_pred HhcccchhhHHHHHHHHHHhCCCCch---hHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHH
Q 043637 386 CAGLSEIKMGKEVHGFIHRNDYSSNI---FVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEA 462 (693)
Q Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 462 (693)
+...|+++.|...++.+.+.. +.+. ..+..+...+...+ +..+...+...|++++|
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~--------------------~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQR--------------------LRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHH--------------------HHHHHHHHHHcCCHHHH
Confidence 999999999999999998754 3333 55555544421111 11222334445555555
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---
Q 043637 463 MTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS--- 539 (693)
Q Consensus 463 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--- 539 (693)
++.|+++....+.+...+..+..++...|++++|...++++.+.... +...+..+..+|...|++++|...++++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 163 IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 55555554444444555555555555555555555555555543221 34455555555555555555555555443
Q ss_pred CCCHHHHHHH------------HHHHHhCCChHHHHHHHHHHHHCCCCCC-----hHHHHHHHHHHhccCcHHHHHHHHH
Q 043637 540 SLDVIICNSM------------ILGFCHNERGREALEVFGLMKKEGIKPD-----HITFHGILLACIHEGNVKLALQFFD 602 (693)
Q Consensus 540 ~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (693)
+.+...+..+ +..+...|++++|...|+++.+ +.|+ ...+..+..++.+.|++++|+..++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2233333333 6677777888888888887777 4555 2356666777778888888888888
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHH------------HHHhcC-----Ccc
Q 043637 603 SMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFD------------KCRKNG-----YAT 663 (693)
Q Consensus 603 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~------------~~~~~g-----~~~ 663 (693)
++.+. .+.+...+..++.+|.+.|++++|...++++. .+.+...+..+.. .|...| +.+
T Consensus 320 ~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ 397 (450)
T 2y4t_A 320 EVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397 (450)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTT
T ss_pred HHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHH
Confidence 77642 23456777777788888888888888877763 2334455555552 233334 667
Q ss_pred HHHHHHHH-HhhcCCCCC
Q 043637 664 LGEWAARR-LNELNPWAP 680 (693)
Q Consensus 664 ~A~~~~~~-~~~~~p~~~ 680 (693)
++...+++ +++..|++.
T Consensus 398 ~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 398 EIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp HHHHHHHHHHHHSCGGGC
T ss_pred HHHHHHHHHHHHhCCCCC
Confidence 78888886 788888654
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=8.4e-20 Score=193.24 Aligned_cols=432 Identities=7% Similarity=-0.051 Sum_probs=266.0
Q ss_pred cccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHH
Q 043637 108 GGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDA 187 (693)
Q Consensus 108 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 187 (693)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|.+.++.+.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3456777788888888888888888887764 4567788888888888888888888888888775 4466777888888
Q ss_pred hhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHH
Q 043637 188 YGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIH 267 (693)
Q Consensus 188 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 267 (693)
+...|++++|...|+.+ ..+....+..+..+...+....|...++++.... |+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~~---------------------- 157 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGRG---------------------- 157 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC------------------------------
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--cccc----------------------
Confidence 88888888888888633 2222222333444555555667777777774421 1000
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCch---hHHHHHHHHHh--------cCCHHHHHHHHhhC
Q 043637 268 GVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNII---SWTSIVSGYAI--------SGRIREARELFNEM 336 (693)
Q Consensus 268 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~~ 336 (693)
....|+. ..+..+....+.+.+...+......+.. ....+...+.. .|++++|..+|+.+
T Consensus 158 -----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~ 228 (537)
T 3fp2_A 158 -----SQVLPSN----TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL 228 (537)
T ss_dssp ------CCCCCH----HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----ccccchH----hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 0001121 2233345556666666666666554332 22233322222 24677888888887
Q ss_pred CC--CCc--------ccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhC
Q 043637 337 PE--RNV--------ISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRND 406 (693)
Q Consensus 337 ~~--~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 406 (693)
.+ |+. .++..+...+...|++++|...|++..+. .|+...+..+...+...|+++.|...++.+.+..
T Consensus 229 l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 306 (537)
T 3fp2_A 229 LSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN 306 (537)
T ss_dssp HC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC
T ss_pred HHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Confidence 66 331 24566667788888899999998888875 4556677777777888888888888888877654
Q ss_pred CCCchhHHHHHHHHHHHcCChHHHHHHHHhhcC--CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHH
Q 043637 407 YSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQ--RRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLL 484 (693)
Q Consensus 407 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll 484 (693)
+.+..++..+...+...|++++|...+.+.+. ..+...|..+...+...|++++|.+.++++....+.+...+..+.
T Consensus 307 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 385 (537)
T 3fp2_A 307 -PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFA 385 (537)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 34566677777777777777777777766654 224556666777777777777777777776655555555666666
Q ss_pred HHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhC--------
Q 043637 485 AACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHN-------- 556 (693)
Q Consensus 485 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-------- 556 (693)
.++...|++++|...++++.+........ ......+......+...
T Consensus 386 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--------------------------~~~~~~~~~~a~~~~~~~~~~~~~~ 439 (537)
T 3fp2_A 386 EILTDRGDFDTAIKQYDIAKRLEEVQEKI--------------------------HVGIGPLIGKATILARQSSQDPTQL 439 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHCSSC--------------------------SSTTHHHHHHHHHHHHHHTC----C
T ss_pred HHHHHhCCHHHHHHHHHHHHHcCCcchhh--------------------------HHHHHHHHHHHHHHHHHhhccchhh
Confidence 66777777777777776665532111000 00111122233344444
Q ss_pred --CChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 557 --ERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 557 --g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
|++++|...++++.+ ..|+ ...+..+..++...|++++|.+.++++.+
T Consensus 440 ~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 440 DEEKFNAAIKLLTKACE--LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 556666666666655 2342 35555555666666666666666666653
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=1.4e-20 Score=199.30 Aligned_cols=234 Identities=8% Similarity=-0.106 Sum_probs=163.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh
Q 043637 445 SWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTK 524 (693)
Q Consensus 445 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 524 (693)
++..+...+...|++++|.+.+++..... |+...+..+...+...|+++.|...++++.+.... +...+..+..++..
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINLH-PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHh
Confidence 34555566677777777777777776553 33667777777777788888888888777775543 55667777777778
Q ss_pred hCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHH
Q 043637 525 CCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQF 600 (693)
Q Consensus 525 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 600 (693)
.|++++|...++++. +.+...|..+...+...|++++|...++++.+. .|+ ...+..+...+...|++++|...
T Consensus 323 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 888888888777665 445667777788888888888888888887773 453 46777777888888888888888
Q ss_pred HHHhHHhcCCCCC----hhHHHHHHHHHHhc----------CChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccH
Q 043637 601 FDSMRCKYGIIPQ----LEHYECMIKLYCRY----------GYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATL 664 (693)
Q Consensus 601 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 664 (693)
++++.+.....++ ...+..+..+|.+. |++++|+..++++. .+.+...+..++..+...|++++
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 8877653211111 12244445666666 88888888887764 35556677777888888888888
Q ss_pred HHHHHHHHhhcCCCCCcc
Q 043637 665 GEWAARRLNELNPWAPFQ 682 (693)
Q Consensus 665 A~~~~~~~~~~~p~~~~~ 682 (693)
|...++++++++|+++..
T Consensus 481 A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 481 AIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHHHHHC--CHHH
T ss_pred HHHHHHHHHHhCCCcHHH
Confidence 888888888888866544
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=3.2e-16 Score=169.53 Aligned_cols=387 Identities=11% Similarity=0.056 Sum_probs=288.6
Q ss_pred CCCChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCC--CCCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccHHHHH
Q 043637 38 EPVSYSLYAHLFQLCASSKAIVEARKLESNLVTFYP--TPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAML 115 (693)
Q Consensus 38 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 115 (693)
-..++.......++|...|.+.+|.+++++++-.+- .-+....+.++.+-.+. +.....+..++...-+ ...+.
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA 1056 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIA 1056 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHH
Confidence 355667778889999999999999999999983321 13445666677666665 4555555555544222 45577
Q ss_pred HHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHH
Q 043637 116 GAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMT 195 (693)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 195 (693)
..+...|.+++|..+|++... .....+.++. ..++++.|.++.++. -+..+|..+..++.+.|+++
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHH
Confidence 888899999999999988631 1222233332 667888888887754 34678889999999999999
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcC
Q 043637 196 DARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDF 275 (693)
Q Consensus 196 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 275 (693)
+|++.|.+. .|...|..++..+.+.|++++|++.|...++.. +++...+.+..++++.++++....+.+
T Consensus 1123 EAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~------- 1191 (1630)
T 1xi4_A 1123 EAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN------- 1191 (1630)
T ss_pred HHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-------
Confidence 999999765 677778889999999999999999998877654 333333458888888887775444421
Q ss_pred CCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCC
Q 043637 276 EGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSL 355 (693)
Q Consensus 276 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 355 (693)
.++...+..+...|...|++++|..+|... ..|..+..++++.|++++|.+.+++. .+..+|..+-.+|...|
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhh
Confidence 345667777899999999999999999985 58999999999999999999999877 45688888888999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHc--CChHHHHHH
Q 043637 356 LWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKC--GNLRSARIW 433 (693)
Q Consensus 356 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~ 433 (693)
++..|...... +..+...+..++..|.+.|.++++..+++...... +-....++-+..+|++- ++..++.+.
T Consensus 1265 Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1265 EFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred HHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 98888876653 44466677788889999999999999997776544 34555666666666654 455566677
Q ss_pred HHhhcCCC-------ChhhHHHHHHHHHhcCChHHHHHHH
Q 043637 434 FYQMSQRR-------DKVSWNAVLTGYARRGQSEEAMTSF 466 (693)
Q Consensus 434 ~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~ 466 (693)
+...+.-| +...|..++..|.+.|+++.|....
T Consensus 1339 f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1339 FWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 77666643 4567889999999999999888443
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=1.3e-18 Score=173.59 Aligned_cols=321 Identities=11% Similarity=-0.051 Sum_probs=215.6
Q ss_pred cccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 043637 341 VISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDM 420 (693)
Q Consensus 341 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 420 (693)
+..+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4456677778888888888888888887643 2234455555555666666666666666655542 2234455555555
Q ss_pred HHHcCChHHHHHHHHhhcCC-C----ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHH
Q 043637 421 YRKCGNLRSARIWFYQMSQR-R----DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQ 495 (693)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 495 (693)
+...|++++|...+.+.+.. | +...+..+...+. ...+..+...+...|++++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE----------------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH----------------------HHHHHHHHHHHHHccCHHH
Confidence 55555555555555554442 2 1111221110000 0001112455666777777
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 043637 496 GKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKE 572 (693)
Q Consensus 496 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 572 (693)
|...++++.+.... +...+..+..++...|++++|...++++. +.+...+..+...+...|++++|...+++..+
T Consensus 139 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~- 216 (359)
T 3ieg_A 139 AITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK- 216 (359)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-
Confidence 77777777665443 45666677777777777777777777654 45667888888888888888889888888887
Q ss_pred CCCCCh-HHHH------------HHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhcCChHHHHH
Q 043637 573 GIKPDH-ITFH------------GILLACIHEGNVKLALQFFDSMRCKYGIIPQL----EHYECMIKLYCRYGYMKELED 635 (693)
Q Consensus 573 g~~p~~-~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~ 635 (693)
..|+. ..+. .+...+...|++++|...++++.+.. +.+. ..+..+..+|.+.|++++|+.
T Consensus 217 -~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 217 -LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp -HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 45543 3332 23567889999999999999998632 2223 235567888999999999999
Q ss_pred HHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 636 FVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 636 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
.+++.. .+.+...+..++..+...|++++|...++++++++|+++.....|+.++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 999875 4557788889999999999999999999999999999988888877664
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.9e-18 Score=170.09 Aligned_cols=280 Identities=9% Similarity=-0.043 Sum_probs=205.5
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 043637 408 SSNIFVSNALLDMYRKCGNLRSARIWFYQMSQR--RDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLA 485 (693)
Q Consensus 408 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~ 485 (693)
+.+..++..+...+...|++++|...+.+.+.. .+...+..++..+...|++++|...++++....+.+...+..+..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 445555666667777777777777777666542 244556666677777777777777777776665556667777777
Q ss_pred HhcccC-ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHH
Q 043637 486 ACANIS-SLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGRE 561 (693)
Q Consensus 486 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~ 561 (693)
.+...| ++++|...++++.+.... +...+..+..++...|++++|...+++.. +.+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 777777 777788877777765433 45667777777888888888888877765 4445667778888888888888
Q ss_pred HHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC-------CCCChhHHHHHHHHHHhcCChHHH
Q 043637 562 ALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYG-------IIPQLEHYECMIKLYCRYGYMKEL 633 (693)
Q Consensus 562 A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A 633 (693)
|.+.+++..+ ..|+ ...+..+...+...|++++|...++++.+... .+.+...+..++.+|.+.|++++|
T Consensus 178 A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 178 AERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888887 4454 57777778888888888888888888875321 133456778888888888888888
Q ss_pred HHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 634 EDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 634 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
+..+++.. .+.+...+..++..+...|++++|...++++++++|+++..+..++..|
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 88888774 3556677778888888888888888888888888888888888888766
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=1e-16 Score=159.80 Aligned_cols=323 Identities=8% Similarity=-0.065 Sum_probs=220.5
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 043637 309 NIISWTSIVSGYAISGRIREARELFNEMPE---RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNV 385 (693)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 385 (693)
++..+..+...+...|++++|...|+.+.+ .+...+..+...+...|++++|...++++.+.. +-+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 345677888999999999999999998865 456788889999999999999999999998863 2256778888889
Q ss_pred HhcccchhhHHHHHHHHHHhCCC--CchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHH
Q 043637 386 CAGLSEIKMGKEVHGFIHRNDYS--SNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAM 463 (693)
Q Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 463 (693)
+...|+++.|...++...+.... .+...+..+...+. + ..+..+...+...|++++|+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~-------------~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------M-------------QRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------H-------------HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------H-------------HHHHHHHHHHHHccCHHHHH
Confidence 99999999999999999875410 23334433321110 0 11222334455555566666
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---C
Q 043637 464 TSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---S 540 (693)
Q Consensus 464 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~ 540 (693)
+.++++....+.+...+..+..++...|++++|...++++.+.... +...+..+...+...|++++|...+++.. +
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 141 TFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 6665555444445555555555556666666666666655554322 44555555556666666666666665544 2
Q ss_pred CCHHHHH------------HHHHHHHhCCChHHHHHHHHHHHHCCCCCChH-----HHHHHHHHHhccCcHHHHHHHHHH
Q 043637 541 LDVIICN------------SMILGFCHNERGREALEVFGLMKKEGIKPDHI-----TFHGILLACIHEGNVKLALQFFDS 603 (693)
Q Consensus 541 ~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~ 603 (693)
.+...+. .+...+...|++++|...++++.+ ..|+.. .+..+..++...|++++|...+++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 297 (359)
T 3ieg_A 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297 (359)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 2222222 336678889999999999999888 456532 244566888999999999999999
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHH
Q 043637 604 MRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCR 657 (693)
Q Consensus 604 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 657 (693)
+.+. .+.++..+..++.+|.+.|++++|...++++. .+.+...+..+..+..
T Consensus 298 ~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 298 VLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 9852 34467888889999999999999999998874 2344555555555544
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=6.7e-16 Score=160.49 Aligned_cols=365 Identities=8% Similarity=-0.036 Sum_probs=211.7
Q ss_pred chHHHHHHHHHHHH----cCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHh
Q 043637 278 DDVVLGSLTEMYVK----CGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTR 353 (693)
Q Consensus 278 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 353 (693)
+...+..+...|.. .+++++|...|++..+. .+...+..|...|..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~------------------------------~~~~a~~~Lg~~y~~ 87 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ------------------------------GYTPAEYVLGLRYMN 87 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------------------------------TCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC------------------------------CCHHHHHHHHHHHHc
Confidence 55666666666666 66677665555543221 233344444444444
Q ss_pred ----CCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc----ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHH--
Q 043637 354 ----SLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAG----LSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRK-- 423 (693)
Q Consensus 354 ----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 423 (693)
.+++++|..+|++..+.| +...+..+-..+.. .++.+.|...++...+.| +...+..+...|..
T Consensus 88 g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~ 161 (490)
T 2xm6_A 88 GEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGD 161 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 445555555555554433 22233333333333 445555555555554443 23344445555554
Q ss_pred --cCChHHHHHHHHhhcCCCChhhHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcc----cCCh
Q 043637 424 --CGNLRSARIWFYQMSQRRDKVSWNAVLTGYAR----RGQSEEAMTSFSEMQWETRPSKFTFETLLAACAN----ISSL 493 (693)
Q Consensus 424 --~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~ 493 (693)
.++.++|...+.+.....+..++..+...|.. .+++++|++.|++....+ +...+..+...+.. .++.
T Consensus 162 g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 162 GVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCH
Confidence 55666666666665555555566666666665 566666666666665543 23344444444443 5666
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHh----hCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHhC-----CChHHHH
Q 043637 494 EQGKQIHCFVIRNCYEINVVCRGALVEVYTK----CCCLEYAIRVFKESS-SLDVIICNSMILGFCHN-----ERGREAL 563 (693)
Q Consensus 494 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~-----g~~~~A~ 563 (693)
++|...+++..+.+ +...+..+...|.. .++.++|...|++.. ..+...+..+...|... ++.++|+
T Consensus 240 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 240 TQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 66666666666543 23344445555555 666777777776654 34455666666666665 6777777
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHH
Q 043637 564 EVFGLMKKEGIKPDHITFHGILLACIHEG---NVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCR----YGYMKELEDF 636 (693)
Q Consensus 564 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~ 636 (693)
..+++..+.| +...+..+...|...| ++++|.+.+++..+. .++..+..|...|.. .++.++|..+
T Consensus 317 ~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 389 (490)
T 2xm6_A 317 SWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIW 389 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 7777777653 3345555555655544 677777777777642 345666667777776 6777777777
Q ss_pred HHhCCCCCCHHhHHHHHHHHHh----cCCccHHHHHHHHHhhcCCC---CCcchhhhhhcc
Q 043637 637 VNRMPFNPTVPMLRKIFDKCRK----NGYATLGEWAARRLNELNPW---APFQFKITTNRF 690 (693)
Q Consensus 637 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~y 690 (693)
+++....+++..+..+...|.. .++.++|...++++.+.+|+ ++.+...|+.++
T Consensus 390 ~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 390 MRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred HHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence 7776555566666677777766 67777777777777777743 666666666554
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=1.9e-16 Score=155.70 Aligned_cols=285 Identities=11% Similarity=-0.020 Sum_probs=193.0
Q ss_pred CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHH
Q 043637 339 RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALL 418 (693)
Q Consensus 339 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 418 (693)
.+...+..+...+...|++++|..+|+++.+.. +.+...+..++
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~------------------------------------p~~~~~~~~~~ 63 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD------------------------------------PFHASCLPVHI 63 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------TTCTTTHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------------------------CCChhhHHHHH
Confidence 345556666666667777777777777766542 12223333344
Q ss_pred HHHHHcCChHHHHHHHHhhcC--CCChhhHHHHHHHHHhcC-ChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHH
Q 043637 419 DMYRKCGNLRSARIWFYQMSQ--RRDKVSWNAVLTGYARRG-QSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQ 495 (693)
Q Consensus 419 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 495 (693)
.++...|++++|...+.+.+. ..+...|..+...+...| ++++|.+.|++.....+.+...+..+..++...|++++
T Consensus 64 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 143 (330)
T 3hym_B 64 GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQ 143 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHH
Confidence 444455555555554444443 123445555666666666 66666666666655554455566666666667777777
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 043637 496 GKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKE 572 (693)
Q Consensus 496 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 572 (693)
|...++++.+.... +...+..+...|...|++++|...+++.. +.+...+..+...+...|++++|...++++.+.
T Consensus 144 A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 144 AMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp HHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 77777776665433 34445557777777777777777777654 456678888889999999999999999888773
Q ss_pred C--------CCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--C
Q 043637 573 G--------IKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--F 642 (693)
Q Consensus 573 g--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 642 (693)
. .+.+..++..+..++...|++++|...++++.+. .+.+...+..+..+|.+.|++++|...++++. .
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 1 0223578888999999999999999999999863 34467788899999999999999999999886 3
Q ss_pred CCCHHhHHHHHHHH-HhcCCc
Q 043637 643 NPTVPMLRKIFDKC-RKNGYA 662 (693)
Q Consensus 643 ~~~~~~~~~l~~~~-~~~g~~ 662 (693)
+.+...+..+...+ ...|+.
T Consensus 301 p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 301 RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp SCCHHHHHHHHHHHHTTTTC-
T ss_pred CCchHHHHHHHHHHHHHhCch
Confidence 44666777777777 455554
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=1.9e-15 Score=156.99 Aligned_cols=401 Identities=10% Similarity=-0.027 Sum_probs=239.7
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHhcC----CCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHH----cCChhHH
Q 043637 227 EAVVMFFKMLREDIRPLNFTFANALFACSF----LSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVK----CGRLEDA 298 (693)
Q Consensus 227 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~a 298 (693)
.++..+....+.| +...+..+...+.. .++.+.|...++...+.| +...+..|...|.. .++.++|
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3456666655543 56677777777766 789999999999988764 56677778888888 7888877
Q ss_pred HhhhcCCCCC-CchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh
Q 043637 299 RGLLDQPDER-NIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQV 377 (693)
Q Consensus 299 ~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 377 (693)
...|++..+. +...+..|...|.... ...+++++|+.+|++..+.| +..
T Consensus 99 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~---------------------------g~~~~~~~A~~~~~~a~~~~---~~~ 148 (490)
T 2xm6_A 99 VIWYKKAALKGLPQAQQNLGVMYHEGN---------------------------GVKVDKAESVKWFRLAAEQG---RDS 148 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTS---------------------------SSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCC---------------------------CCCCCHHHHHHHHHHHHHCC---CHH
Confidence 7666653322 3333444444444400 00444555555555444433 222
Q ss_pred hHHHHHHHHhc----ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHH----cCChHHHHHHHHhhcCCCChhhHHHH
Q 043637 378 TLGLILNVCAG----LSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRK----CGNLRSARIWFYQMSQRRDKVSWNAV 449 (693)
Q Consensus 378 ~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~l 449 (693)
.+..+-..+.. .++.+.|.+.++...+.+ +...+..+...|.. .++.++|...+.+.....+..++..+
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l 225 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHL 225 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 33333333332 344555555555554433 34444555555555 56666666666665555555556666
Q ss_pred HHHHHh----cCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcc----cCChHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 043637 450 LTGYAR----RGQSEEAMTSFSEMQWETRPSKFTFETLLAACAN----ISSLEQGKQIHCFVIRNCYEINVVCRGALVEV 521 (693)
Q Consensus 450 ~~~~~~----~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (693)
...|.. .+++++|.++|++....+. ...+..+...+.. .++.++|...+++..+.| +...+..+...
T Consensus 226 g~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~ 300 (490)
T 2xm6_A 226 ADMYYFGIGVTQDYTQSRVLFSQSAEQGN--SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHL 300 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 665554 5666666666666655432 2334444444444 566677777776666543 33445555666
Q ss_pred HHhh-----CCHHHHHHHHhcCC-CCCHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc--
Q 043637 522 YTKC-----CCLEYAIRVFKESS-SLDVIICNSMILGFCHNE---RGREALEVFGLMKKEGIKPDHITFHGILLACIH-- 590 (693)
Q Consensus 522 ~~~~-----~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-- 590 (693)
|... ++.++|...+++.. ..+...+..+...|...| +.++|++.|++..+.| +...+..+...|..
T Consensus 301 y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~ 377 (490)
T 2xm6_A 301 YDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGK 377 (490)
T ss_dssp HHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred HHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 6655 67777777776655 445556666777776655 6788888888888753 56677777777777
Q ss_pred --cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCC-CC----CHHhHHHHHHHHHhc
Q 043637 591 --EGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCR----YGYMKELEDFVNRMPF-NP----TVPMLRKIFDKCRKN 659 (693)
Q Consensus 591 --~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~ 659 (693)
.+++++|...+++..+. + ++..+..|...|.+ .++.++|..+|++... .+ ++.....+...+.
T Consensus 378 g~~~~~~~A~~~~~~A~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~-- 451 (490)
T 2xm6_A 378 GVKKDEQQAAIWMRKAAEQ-G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA-- 451 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH--
T ss_pred CCCCCHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH--
Confidence 78888888888888752 3 46667778888877 7888888888887752 21 2223333333222
Q ss_pred CCccHHHHHHHHHhhcCCCCC
Q 043637 660 GYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 660 g~~~~A~~~~~~~~~~~p~~~ 680 (693)
.+.+.|....+++++..|+..
T Consensus 452 ~~~~~a~~~a~~~~~~~~~~~ 472 (490)
T 2xm6_A 452 KQLQQAELLSQQYIEKYAPEA 472 (490)
T ss_dssp HHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 234555656666666556443
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=8.5e-17 Score=156.11 Aligned_cols=278 Identities=13% Similarity=0.094 Sum_probs=136.5
Q ss_pred cCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCChhhHHHHHHH
Q 043637 54 SSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLD 133 (693)
Q Consensus 54 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 133 (693)
..|++++|.++++++ +++.+|..++.++.+.|++++|++.|.+ .+|...|..++.++...|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 557899999999988 3446899999999999999999999975 46777999999999999999999998877
Q ss_pred hhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHH
Q 043637 134 MNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWN 213 (693)
Q Consensus 134 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 213 (693)
.++. .+++.+.+.++.++.+.|+++.+.++++ .|+..+|..+...|...|.+++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHH
Confidence 7764 5667889999999999999999998885 477789999999999999999999999987 4899
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcC
Q 043637 214 VIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCG 293 (693)
Q Consensus 214 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 293 (693)
.++.++.+.|++++|++.+.++ .+..+|..++.+|...|+++.|...... +...+.-...++..|.+.|
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G 221 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRG 221 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCC
Confidence 9999999999999999999988 3778999999999999999999554443 2233334557889999999
Q ss_pred ChhHHHhhhcCCCC---CCchhHHHHHHHHHh--cCCHHHHHHHHhhCCC--------CCcccHHHHHHHHHhCCCHHHH
Q 043637 294 RLEDARGLLDQPDE---RNIISWTSIVSGYAI--SGRIREARELFNEMPE--------RNVISWNAMLAGYTRSLLWKEA 360 (693)
Q Consensus 294 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a 360 (693)
++++|..+++.... .....|+.+.-.|++ .++..+.++.|..-.. .+...|..+...|...++++.|
T Consensus 222 ~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 222 YFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 99999999987654 344577777777765 5677788888876554 3578899999999999999988
Q ss_pred HHHH
Q 043637 361 LDFV 364 (693)
Q Consensus 361 ~~~~ 364 (693)
...+
T Consensus 302 ~~tm 305 (449)
T 1b89_A 302 IITM 305 (449)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=8.7e-16 Score=146.64 Aligned_cols=257 Identities=10% Similarity=-0.010 Sum_probs=209.7
Q ss_pred HHHHHcCChHHHHHHHHhhcCC-CCh--hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHH
Q 043637 419 DMYRKCGNLRSARIWFYQMSQR-RDK--VSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQ 495 (693)
Q Consensus 419 ~~~~~~~~~~~a~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 495 (693)
+-....|++..|+..+...... |+. .....+.++|...|++++|+..++. ..+|+..++..+...+...++.+.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHH
Confidence 3455678999997777665543 332 2445577899999999999876644 347778888999999999999999
Q ss_pred HHHHHHHHHHhCCCc-chhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 043637 496 GKQIHCFVIRNCYEI-NVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGI 574 (693)
Q Consensus 496 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 574 (693)
|.+.++++...+..| +...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++.+ .
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~ 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD--Q 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--h
Confidence 999999998876555 455667777899999999999999999 67888999999999999999999999999999 4
Q ss_pred CCChHHH---HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhH
Q 043637 575 KPDHITF---HGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPML 649 (693)
Q Consensus 575 ~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 649 (693)
.|+.... ..++..+...|++++|..+|+++.+. .+.++..+..++.++.+.|++++|+..++++. .+.++.++
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 5765322 22334455669999999999999963 56688899999999999999999999999875 46677789
Q ss_pred HHHHHHHHhcCCccH-HHHHHHHHhhcCCCCCcchh
Q 043637 650 RKIFDKCRKNGYATL-GEWAARRLNELNPWAPFQFK 684 (693)
Q Consensus 650 ~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~ 684 (693)
..++..+...|+..+ +.+.++++++++|+++....
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 999999999999876 67899999999999986644
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=2.6e-16 Score=157.48 Aligned_cols=284 Identities=7% Similarity=-0.072 Sum_probs=132.2
Q ss_pred hcCCHHHHHH-HHhhCCC-----C--CcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchh
Q 043637 322 ISGRIREARE-LFNEMPE-----R--NVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIK 393 (693)
Q Consensus 322 ~~g~~~~A~~-~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 393 (693)
..|++++|.. .|++... | +...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3456667776 6665443 1 34567777888888888888888888887642 123334444444444444444
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 043637 394 MGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWET 473 (693)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 473 (693)
.|...++.+.+.. +. +..++..+...+...|++++|.+.++++....
T Consensus 116 ~A~~~~~~al~~~-~~--------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 162 (368)
T 1fch_A 116 LAISALRRCLELK-PD--------------------------------NQTALMALAVSFTNESLQRQACEILRDWLRYT 162 (368)
T ss_dssp HHHHHHHHHHHHC-TT--------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcC-CC--------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4444444443332 22 33444555555555555555555555554443
Q ss_pred CCCHHHHHH---------------HHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcC
Q 043637 474 RPSKFTFET---------------LLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKES 538 (693)
Q Consensus 474 ~p~~~~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 538 (693)
+.+...+.. .+..+...|++++|...++++.+.....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~---------------------------- 214 (368)
T 1fch_A 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS---------------------------- 214 (368)
T ss_dssp TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTS----------------------------
T ss_pred cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCc----------------------------
Confidence 222111111 1111124455555555555554432221
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHH
Q 043637 539 SSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHY 617 (693)
Q Consensus 539 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 617 (693)
++..++..+...+...|++++|...++++.+ +.|+ ...+..+...+...|++++|...++++.+. .+.+...+
T Consensus 215 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~ 288 (368)
T 1fch_A 215 --IDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSR 288 (368)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred --ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 0234444444445555555555555555444 2332 344444445555555555555555554431 12234444
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC--CCCC-----------HHhHHHHHHHHHhcCCccHHHHHHHHHh
Q 043637 618 ECMIKLYCRYGYMKELEDFVNRMP--FNPT-----------VPMLRKIFDKCRKNGYATLGEWAARRLN 673 (693)
Q Consensus 618 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 673 (693)
..++.+|.+.|++++|...++++. .+.+ ...|..+..++...|+.++|..++++.+
T Consensus 289 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 289 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 455555555555555555554442 0111 3445555555555555555555544433
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=3.7e-16 Score=151.63 Aligned_cols=220 Identities=12% Similarity=0.115 Sum_probs=70.2
Q ss_pred ccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHH
Q 043637 89 KCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGL 168 (693)
Q Consensus 89 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 168 (693)
+.|++++|.++++++..| .+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 678899999999999665 49999999999999999999999653 5788999999999999999999998887
Q ss_pred HHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHH
Q 043637 169 IVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFA 248 (693)
Q Consensus 169 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 248 (693)
..+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 7774 45578899999999999999999888863 67778999999999999999999999976 3677
Q ss_pred HHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHH
Q 043637 249 NALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIRE 328 (693)
Q Consensus 249 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 328 (693)
.+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 7777777777777777776665 256666667777777777776655554433 222223334444555555555
Q ss_pred HHHHHhhCC
Q 043637 329 ARELFNEMP 337 (693)
Q Consensus 329 A~~~~~~~~ 337 (693)
|..+++...
T Consensus 226 ai~lLe~aL 234 (449)
T 1b89_A 226 LITMLEAAL 234 (449)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 555554443
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=2.7e-15 Score=157.61 Aligned_cols=215 Identities=9% Similarity=-0.030 Sum_probs=168.8
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHhcc-------cCChH-------HHHHHHHHHHHhCCCcchhHHHHHHHHHHhh
Q 043637 460 EEAMTSFSEMQWETRPSKFTFETLLAACAN-------ISSLE-------QGKQIHCFVIRNCYEINVVCRGALVEVYTKC 525 (693)
Q Consensus 460 ~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (693)
+++..+|++.....+.+...|......+.. .|+++ +|..++++..+.-.+-+...+..++..+.+.
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 367788888776656677777777777764 68877 8899999888632233677888899999999
Q ss_pred CCHHHHHHHHhcCC--CC-CH-HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHH-HhccCcHHHHHH
Q 043637 526 CCLEYAIRVFKESS--SL-DV-IICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLA-CIHEGNVKLALQ 599 (693)
Q Consensus 526 ~~~~~A~~~~~~~~--~~-~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~-~~~~g~~~~A~~ 599 (693)
|++++|..+|+++. .| +. ..|..++..+.+.|++++|.++|++..+. .|+ ...|...... +...|++++|..
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHH
Confidence 99999999999876 44 33 48999999999999999999999999984 454 3444333322 335899999999
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-CC-C----HHhHHHHHHHHHhcCCccHHHHHHHHHh
Q 043637 600 FFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPF-NP-T----VPMLRKIFDKCRKNGYATLGEWAARRLN 673 (693)
Q Consensus 600 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 673 (693)
+|++..+. .+.++..|..++..+.+.|+.++|..+|++... .| + ...|...+......|+.+.+..+.+++.
T Consensus 413 ~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 413 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999864 234578889999999999999999999998752 22 2 3378888888888999999999999999
Q ss_pred hcCCC
Q 043637 674 ELNPW 678 (693)
Q Consensus 674 ~~~p~ 678 (693)
+..|+
T Consensus 491 ~~~p~ 495 (530)
T 2ooe_A 491 TAFRE 495 (530)
T ss_dssp HHTHH
T ss_pred HHCch
Confidence 99985
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=1.2e-15 Score=158.21 Aligned_cols=217 Identities=10% Similarity=-0.044 Sum_probs=113.0
Q ss_pred ChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh-------------
Q 043637 458 QSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTK------------- 524 (693)
Q Consensus 458 ~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------- 524 (693)
++++|.+.+++.....+.+...+..+...+...|++++|...+++..+..+. +...+..+..+|..
T Consensus 228 ~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 228 EEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp --CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4445555555544444444444555555555555555555555555543322 23333333333321
Q ss_pred ------hCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh--HHHHHHHH-HHhccC
Q 043637 525 ------CCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH--ITFHGILL-ACIHEG 592 (693)
Q Consensus 525 ------~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~-~~~~~g 592 (693)
.+..++|...+++.. +.+...+..+...+...|++++|++.|++..+....|.. ..+..+.. .....|
T Consensus 307 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (472)
T 4g1t_A 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMK 386 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCC
Confidence 233566777776654 455667888999999999999999999999984332221 12333332 345778
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHH
Q 043637 593 NVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAAR 670 (693)
Q Consensus 593 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 670 (693)
++++|+..+++..+ +.|+........ +.+..++++.. .+.++..+..++..+...|++++|.+.++
T Consensus 387 ~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 387 CEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp CHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred CHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999874 455543322222 22333443332 35567789999999999999999999999
Q ss_pred HHhhcCCCCCcchhhhh
Q 043637 671 RLNELNPWAPFQFKITT 687 (693)
Q Consensus 671 ~~~~~~p~~~~~~~~l~ 687 (693)
+++++.|.+|.+..-+|
T Consensus 455 kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 455 RGLESGSLIPSASSWNG 471 (472)
T ss_dssp -----------------
T ss_pred HHHhcCCCCCcHhhcCC
Confidence 99999999998876665
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=1.4e-16 Score=159.48 Aligned_cols=266 Identities=9% Similarity=-0.073 Sum_probs=205.3
Q ss_pred HHHcCChHHHHH-HHHhhcCC----C--ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCCh
Q 043637 421 YRKCGNLRSARI-WFYQMSQR----R--DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSL 493 (693)
Q Consensus 421 ~~~~~~~~~a~~-~~~~~~~~----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 493 (693)
+...|++++|.. .+.+.+.. | +...+..+...+.+.|++++|+..|+++....+.+...+..+..++...|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 334567777766 66655542 1 3456777888888888888888888888877777778888888888888888
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHH---------------HHHHHHh
Q 043637 494 EQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNS---------------MILGFCH 555 (693)
Q Consensus 494 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~---------------l~~~~~~ 555 (693)
++|...++++.+.... +...+..+..+|...|++++|...++++. +.+...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 8888888888886543 66778888888888888888888888765 222222221 2333448
Q ss_pred CCChHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 043637 556 NERGREALEVFGLMKKEGIKPD---HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKE 632 (693)
Q Consensus 556 ~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 632 (693)
.|++++|...++++.+ ..|+ ..++..+...+...|++++|...++++.+. .+.+...+..++..|.+.|++++
T Consensus 194 ~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 194 DSLFLEVKELFLAAVR--LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHH--HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHHHH--hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 8999999999999998 4565 678889999999999999999999999863 34467889999999999999999
Q ss_pred HHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCC-----------Ccchhhhhhccc
Q 043637 633 LEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWA-----------PFQFKITTNRFD 691 (693)
Q Consensus 633 A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~y~ 691 (693)
|+..++++. .+.+...+..++..+...|++++|...+++++++.|++ +..+..++.+|.
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence 999999875 45667889999999999999999999999999999987 677888887764
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=8e-17 Score=160.91 Aligned_cols=233 Identities=10% Similarity=-0.078 Sum_probs=188.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 043637 442 DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEV 521 (693)
Q Consensus 442 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (693)
+...|..+...+.+.|++++|++.|+++....+.+..++..+..++...|++++|...++++.+.... +...+..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 34558888888888999999999999887777777888888888888999999999999988886543 56778888888
Q ss_pred HHhhCCHHHHHHHHhcCCC--CC-----------HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---hHHHHHHH
Q 043637 522 YTKCCCLEYAIRVFKESSS--LD-----------VIICNSMILGFCHNERGREALEVFGLMKKEGIKPD---HITFHGIL 585 (693)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~~--~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~ 585 (693)
|...|++++|...++++.. |+ ...+..+...+...|++++|.+.++++.+. .|+ ..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHHH
Confidence 9999999999998887662 21 223345588899999999999999999994 554 68889999
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCcc
Q 043637 586 LACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYAT 663 (693)
Q Consensus 586 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 663 (693)
..+...|++++|+..++++.+ ..+.+...+..++.+|.+.|++++|+..++++. .+.+...+..++..|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999999986 344568889999999999999999999999875 4556788999999999999999
Q ss_pred HHHHHHHHHhhcCCCC
Q 043637 664 LGEWAARRLNELNPWA 679 (693)
Q Consensus 664 ~A~~~~~~~~~~~p~~ 679 (693)
+|...+++++++.|++
T Consensus 299 ~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCccc
Confidence 9999999999999873
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=8.3e-16 Score=153.49 Aligned_cols=262 Identities=11% Similarity=0.002 Sum_probs=147.2
Q ss_pred CcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 043637 340 NVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLD 419 (693)
Q Consensus 340 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 419 (693)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------------------------------------p~~~~~~~~lg~ 107 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD------------------------------------PGDAEAWQFLGI 107 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------------cCCHHHHHHHHH
Confidence 34557777777888888888888888776642 122333444444
Q ss_pred HHHHcCChHHHHHHHHhhcC--CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC----------HHHHHHHHHHh
Q 043637 420 MYRKCGNLRSARIWFYQMSQ--RRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPS----------KFTFETLLAAC 487 (693)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~----------~~~~~~ll~~~ 487 (693)
++...|++++|+..+.+.+. ..+..+|..+...|...|++++|++.|+++....+.+ ...+..+...+
T Consensus 108 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~ 187 (365)
T 4eqf_A 108 TQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSP 187 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------------
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHH
Confidence 55555555555554444443 1234455666666666666666666666654432111 12233446666
Q ss_pred cccCChHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHH
Q 043637 488 ANISSLEQGKQIHCFVIRNCYE-INVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREAL 563 (693)
Q Consensus 488 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 563 (693)
...|++++|...++++.+.... .+...+..+..+|...|++++|...+++.. +.+..+|..+..++...|++++|+
T Consensus 188 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 267 (365)
T 4eqf_A 188 VDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAV 267 (365)
T ss_dssp -CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777777765433 145556666666666666666666666544 344556666666666666666666
Q ss_pred HHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC----------CChhHHHHHHHHHHhcCChHH
Q 043637 564 EVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGII----------PQLEHYECMIKLYCRYGYMKE 632 (693)
Q Consensus 564 ~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------p~~~~~~~l~~~~~~~g~~~~ 632 (693)
+.++++.+ +.|+ ..++..+..+|...|++++|...++++.+...-. .+...|..+..++...|+.+.
T Consensus 268 ~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 345 (365)
T 4eqf_A 268 EAYTRALE--IQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPEL 345 (365)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHh--cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHH
Confidence 66666666 3443 4556666666666666666666666665421110 024455566666666666666
Q ss_pred HHHHHHh
Q 043637 633 LEDFVNR 639 (693)
Q Consensus 633 A~~~~~~ 639 (693)
|....++
T Consensus 346 a~~~~~~ 352 (365)
T 4eqf_A 346 FQAANLG 352 (365)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 6655544
No 30
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=2.8e-13 Score=142.24 Aligned_cols=198 Identities=10% Similarity=0.043 Sum_probs=128.2
Q ss_pred ChhhHHHHHHHHHh-------cCChH-------HHHHHHHHhhhC-CCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHh
Q 043637 442 DKVSWNAVLTGYAR-------RGQSE-------EAMTSFSEMQWE-TRPSKFTFETLLAACANISSLEQGKQIHCFVIRN 506 (693)
Q Consensus 442 ~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 506 (693)
+...|..++..+.+ .|+++ +|.++|++.... .+.+...+..++..+...|++++|..+++++.+.
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 44455555555543 46655 667777776652 2445666666666666677777777777777664
Q ss_pred CCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC--CC-CHHHHHHHHHH-HHhCCChHHHHHHHHHHHHCCCCCC-hHHH
Q 043637 507 CYEINVVCRGALVEVYTKCCCLEYAIRVFKESS--SL-DVIICNSMILG-FCHNERGREALEVFGLMKKEGIKPD-HITF 581 (693)
Q Consensus 507 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~ 581 (693)
...-....|..++..+.+.|++++|..+|++.. .| +...|...+.. +...|+.++|..+|++..+ ..|+ ...|
T Consensus 351 ~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~--~~p~~~~~~ 428 (530)
T 2ooe_A 351 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK--KYGDIPEYV 428 (530)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHTTCHHHH
T ss_pred cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH--HCCCCHHHH
Confidence 322112466666666777777777777777655 12 22333322222 3357888888888888887 4564 5778
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 582 HGILLACIHEGNVKLALQFFDSMRCKYGIIPQ--LEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 582 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
..++..+.+.|+.++|..+|+++.......|+ ...|...+....+.|+.+.+..+.+++.
T Consensus 429 ~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 429 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888888888899998888753223332 3367777777778888888888887764
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.68 E-value=6.6e-16 Score=151.64 Aligned_cols=259 Identities=10% Similarity=-0.050 Sum_probs=153.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhcC--CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCC
Q 043637 415 NALLDMYRKCGNLRSARIWFYQMSQ--RRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISS 492 (693)
Q Consensus 415 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 492 (693)
..+...+...|++++|...+.+.+. ..+..++..+...+...|++++|.+.++++....+.+...+..+...+...|+
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC
Confidence 3344444555555555444444433 12334455555555555555555555555544444445555555555555555
Q ss_pred hHHHHHHHHHHHHhCCCcchhHHHHH--------------HH-HHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHH
Q 043637 493 LEQGKQIHCFVIRNCYEINVVCRGAL--------------VE-VYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFC 554 (693)
Q Consensus 493 ~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 554 (693)
+++|...++++.+.... +...+..+ .. .+...|++++|...++++. +.+...+..+...+.
T Consensus 105 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 105 ANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN 183 (327)
T ss_dssp HHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 55555555555543222 11111111 11 2555666677766666654 445667777777777
Q ss_pred hCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 043637 555 HNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKEL 633 (693)
Q Consensus 555 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 633 (693)
..|++++|.+.++++.+ ..|+ ..++..+...+...|++++|...++++.+ ..+.+...+..++..|.+.|++++|
T Consensus 184 ~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVE--LRPDDAQLWNKLGATLANGNRPQEALDAYNRALD--INPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhccHHHH
Confidence 77777777777777776 3443 46677777777777777777777777764 2234566677777777777777777
Q ss_pred HHHHHhCC--CCC------------CHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCC
Q 043637 634 EDFVNRMP--FNP------------TVPMLRKIFDKCRKNGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 634 ~~~~~~~~--~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 678 (693)
...++++. .+. +...+..+...+...|+.++|...+++.++..|+
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 77777663 122 3556777777777777887777777776665553
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=1.4e-14 Score=142.16 Aligned_cols=264 Identities=9% Similarity=-0.045 Sum_probs=185.3
Q ss_pred CcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 043637 340 NVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLD 419 (693)
Q Consensus 340 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 419 (693)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~------- 90 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIA------- 90 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH-------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHH-------
Confidence 34556777778888888888888888887653 1234444445555555555555555555554432 22333
Q ss_pred HHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHH--------------HH
Q 043637 420 MYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETL--------------LA 485 (693)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~l--------------l~ 485 (693)
++..+...+...|++++|.+.++++....+.+...+..+ ..
T Consensus 91 -------------------------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 91 -------------------------VHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp -------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------
T ss_pred -------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 444444455555555555555555544332222222222 22
Q ss_pred -HhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHH
Q 043637 486 -ACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGRE 561 (693)
Q Consensus 486 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~ 561 (693)
.+...|++++|...++++.+.... +...+..+...|...|++++|...++++. +.+...+..+...+...|++++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Confidence 367778888888888888876544 66778888888888899999988888765 5567789999999999999999
Q ss_pred HHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-----------ChhHHHHHHHHHHhcCC
Q 043637 562 ALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP-----------QLEHYECMIKLYCRYGY 629 (693)
Q Consensus 562 A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~ 629 (693)
|...++++.+ ..| +...+..+...+...|++++|.+.++++.+. .-.. +...+..+..+|.+.|+
T Consensus 225 A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 225 ALDAYNRALD--INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM-QVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH--cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 9999999988 456 4678888999999999999999999999853 2111 46788899999999999
Q ss_pred hHHHHHHHHhCC
Q 043637 630 MKELEDFVNRMP 641 (693)
Q Consensus 630 ~~~A~~~~~~~~ 641 (693)
.++|..++++..
T Consensus 302 ~~~A~~~~~~~l 313 (327)
T 3cv0_A 302 PDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHTTCCS
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.67 E-value=5.4e-14 Score=134.20 Aligned_cols=191 Identities=12% Similarity=-0.024 Sum_probs=99.9
Q ss_pred hhHHHHHHHHhcccchhhHHHHHHHHHHhCC-CCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 043637 377 VTLGLILNVCAGLSEIKMGKEVHGFIHRNDY-SSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYAR 455 (693)
Q Consensus 377 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (693)
.++..+...+...++.+.+.+.++.+...+. +.+...+..+...+...|++++|+..+.+ ..+...+..++..+.+
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~ 142 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---GDSLECMAMTVQILLK 142 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444444332 22344455566777778888888776666 3456677777777888
Q ss_pred cCChHHHHHHHHHhhhCCCCCHHHH--HHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHH
Q 043637 456 RGQSEEAMTSFSEMQWETRPSKFTF--ETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIR 533 (693)
Q Consensus 456 ~~~~~~a~~~~~~~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 533 (693)
.|++++|.+.|+++....+.+.... ...+..+...|++++|..+|+++.+..+ .+...++.+..++.+.|++++|..
T Consensus 143 ~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~ 221 (291)
T 3mkr_A 143 LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEG 221 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888765542221111 1122333344666666666666666532 244444444444444444444444
Q ss_pred HHhcCC---CCCHHHHHHHHHHHHhCCChHH-HHHHHHHHHH
Q 043637 534 VFKESS---SLDVIICNSMILGFCHNERGRE-ALEVFGLMKK 571 (693)
Q Consensus 534 ~~~~~~---~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~ 571 (693)
.+++.. +.+..++..++..+...|+.++ +.++++++.+
T Consensus 222 ~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 222 VLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 444433 2334444444444444444433 2344444444
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=7.9e-15 Score=138.33 Aligned_cols=235 Identities=9% Similarity=-0.083 Sum_probs=185.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCc--c----hhHHHH
Q 043637 444 VSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEI--N----VVCRGA 517 (693)
Q Consensus 444 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~~ 517 (693)
..+..+...+...|++++|++.|++..... .+...+..+..++...|++++|...++++.+..... + ...+..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 346666777777788888888887776665 667777777888888888888888888777633221 1 567777
Q ss_pred HHHHHHhhCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcH
Q 043637 518 LVEVYTKCCCLEYAIRVFKESS--SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNV 594 (693)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~ 594 (693)
+..+|...|++++|...+++.. .|+. ..+...|++++|...++++.. ..|+ ...+..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCH
Confidence 8888888888888888888766 4443 345566788999999999988 5664 46788888999999999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHH
Q 043637 595 KLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRL 672 (693)
Q Consensus 595 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 672 (693)
++|...++++.+ ..+.+...+..++.+|.+.|++++|+..++++. .+.+...+..++..+...|++++|...++++
T Consensus 156 ~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999986 334567888899999999999999999999875 4556778888999999999999999999999
Q ss_pred hhcC------CCCCcchhhhhhcc
Q 043637 673 NELN------PWAPFQFKITTNRF 690 (693)
Q Consensus 673 ~~~~------p~~~~~~~~l~~~y 690 (693)
++++ |++......++..+
T Consensus 234 ~~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred HHhChhhcCCCchHHHHHHHHHhh
Confidence 9999 88877777666543
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=2.2e-16 Score=165.51 Aligned_cols=149 Identities=11% Similarity=0.015 Sum_probs=120.7
Q ss_pred CchhhHhHHHHHhhcCCCHHHHHHHHhccC-------CCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHH
Q 043637 176 GNVILESSLVDAYGKCMVMTDARRMFDDIQ-------NKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFA 248 (693)
Q Consensus 176 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 248 (693)
.-..+|++||++|++.|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345688888888888888888888886653 5899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCc-chhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCC-----CchhHHHHHHHHHh
Q 043637 249 NALFACSFLSSP-YEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDER-----NIISWTSIVSGYAI 322 (693)
Q Consensus 249 ~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~ 322 (693)
++|.++++.|.. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++...+..+ .+.+...|.+.|.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 999999999885 678999999999999999999999998888887777776665544431 12333444455554
Q ss_pred cC
Q 043637 323 SG 324 (693)
Q Consensus 323 ~g 324 (693)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=1.7e-14 Score=137.37 Aligned_cols=240 Identities=8% Similarity=-0.051 Sum_probs=155.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcc--hhHHHHHHHHHHh
Q 043637 447 NAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEIN--VVCRGALVEVYTK 524 (693)
Q Consensus 447 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 524 (693)
......+...|++++|+..|++.....+.+...+..+..++...|++++|...++++.+....++ ...+..+..+|..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 33445555666666666666666555444444555566666666666666666666665221111 2235566666666
Q ss_pred hCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHH
Q 043637 525 CCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQF 600 (693)
Q Consensus 525 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 600 (693)
.|++++|...+++.. +.+...|..+...+...|++++|++.+++..+ +.|+ ...+..+...+...+++++|...
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777766666554 44556777777777788888888888877777 3554 45555555344445588888888
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhCC----CCCC------HHhHHHHHHHHHhcCCccHHHH
Q 043637 601 FDSMRCKYGIIPQLEHYECMIKLYCRYGY---MKELEDFVNRMP----FNPT------VPMLRKIFDKCRKNGYATLGEW 667 (693)
Q Consensus 601 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~~~~------~~~~~~l~~~~~~~g~~~~A~~ 667 (693)
++++.+. .+.+...+..+..++...|+ .++|...++++. ..|+ ...+..++..|...|++++|..
T Consensus 165 ~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 165 FVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8887752 23345666667777777776 666666666553 1122 1466678888889999999999
Q ss_pred HHHHHhhcCCCCCcchhhhhhcc
Q 043637 668 AARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 668 ~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
.++++++++|+++.+...++.+.
T Consensus 243 ~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 243 AWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHHHHhcCccHHHHHHHhhhhh
Confidence 99999999999998888777654
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=7.4e-16 Score=161.63 Aligned_cols=124 Identities=15% Similarity=0.164 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcC-------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHH
Q 043637 512 VVCRGALVEVYTKCCCLEYAIRVFKES-------SSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGI 584 (693)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 584 (693)
..+|++++++|++.|++++|.++|++| ..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 345556666666666666666655432 2578888888888888888888888888888888888888888888
Q ss_pred HHHHhccCc-HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 043637 585 LLACIHEGN-VKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDF 636 (693)
Q Consensus 585 ~~~~~~~g~-~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 636 (693)
|.++++.|+ .++|.++|++|.++ |+.||..+|+.++....+.+-++...++
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence 888888887 46788888888864 8888888888877766666544444444
No 38
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.60 E-value=8.3e-13 Score=136.83 Aligned_cols=364 Identities=9% Similarity=-0.069 Sum_probs=214.5
Q ss_pred cccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcC-CCchHHHHHHHH
Q 043637 209 AVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDF-EGDDVVLGSLTE 287 (693)
Q Consensus 209 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~ 287 (693)
...||.|...+...|++++|++.|++..+. ......... .....+|+.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~----------------------------~~~~~~~~~~~~~~~~~~nla~ 102 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEEL----------------------------IQQEHADQAEIRSLVTWGNYAW 102 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHHSGGGCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------------------HHhcCccccchHHHHHHHHHHH
Confidence 445777777778888888888887765431 000000001 123456777788
Q ss_pred HHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC----CcccHHHHHHHHHh--CCCHHHHH
Q 043637 288 MYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPER----NVISWNAMLAGYTR--SLLWKEAL 361 (693)
Q Consensus 288 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~--~~~~~~a~ 361 (693)
+|...|++++|...++ ++.++......+ ...++..+..++.. .+++++|+
T Consensus 103 ~y~~~g~~~~A~~~~~------------------------ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~ 158 (472)
T 4g1t_A 103 VYYHMGRLSDVQIYVD------------------------KVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAK 158 (472)
T ss_dssp HHHHTTCHHHHHHHHH------------------------HHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHcCChHHHHHHHH------------------------HHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHH
Confidence 8888888887777766 444444443331 12234444434333 34577777
Q ss_pred HHHHHHHHcCCCCCH-hhHHHHHHH---HhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHH----cCChHHHHHH
Q 043637 362 DFVFLMRKTTKDIDQ-VTLGLILNV---CAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRK----CGNLRSARIW 433 (693)
Q Consensus 362 ~~~~~m~~~~~~p~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 433 (693)
..|++..+. .|+. ..+..+..+ +...++.+.|.+.++...+.. +.+..++..+...+.. .++.++|...
T Consensus 159 ~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~ 235 (472)
T 4g1t_A 159 VCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKL 235 (472)
T ss_dssp HHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHH
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 777776654 3432 222222222 234455566666666665543 3344444444444433 3456667666
Q ss_pred HHhhcC--CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcc-------------------cCC
Q 043637 434 FYQMSQ--RRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACAN-------------------ISS 492 (693)
Q Consensus 434 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~-------------------~~~ 492 (693)
+.+... ..+..++..+...|...|++++|++.+++.....+.+..++..+..++.. .+.
T Consensus 236 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~ 315 (472)
T 4g1t_A 236 VEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLEL 315 (472)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHH
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Confidence 666544 23555677777777778888888887777766555555666555544422 123
Q ss_pred hHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC--CCCHH----HHHHHHH-HHHhCCChHHHHHH
Q 043637 493 LEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS--SLDVI----ICNSMIL-GFCHNERGREALEV 565 (693)
Q Consensus 493 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~----~~~~l~~-~~~~~g~~~~A~~~ 565 (693)
.+.|...++...+.... +...+..+...|...|++++|...|++.. .++.. .+..+.. .....|+.++|+..
T Consensus 316 ~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~ 394 (472)
T 4g1t_A 316 IGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHH 394 (472)
T ss_dssp HHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56677777777775543 55677888999999999999999998765 33322 2333332 34578999999999
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 566 FGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 566 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
+++..+ +.|+...... ....+.++++...+ ..+.++..|..+..+|...|++++|++.+++..
T Consensus 395 y~kal~--i~~~~~~~~~---------~~~~l~~~~~~~l~--~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kAL 457 (472)
T 4g1t_A 395 FIEGVK--INQKSREKEK---------MKDKLQKIAKMRLS--KNGADSEALHVLAFLQELNEKMQQADEDSERGL 457 (472)
T ss_dssp HHHHHH--SCCCCHHHHH---------HHHHHHHHHHHHHH--HCC-CTTHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHh--cCcccHHHHH---------HHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999 7787543322 23444556666654 345568889999999999999999999999886
No 39
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=5.2e-14 Score=138.83 Aligned_cols=243 Identities=7% Similarity=-0.051 Sum_probs=197.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCC-hHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 043637 443 KVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISS-LEQGKQIHCFVIRNCYEINVVCRGALVEV 521 (693)
Q Consensus 443 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (693)
...|..+...+.+.|++++|++.+++.....+-+...|..+..++...|+ +++|...++++++...+ +...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 34577777788888888888888888877767777888888888888886 88898888888887655 67778888888
Q ss_pred HHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhc-cCcHHH
Q 043637 522 YTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIH-EGNVKL 596 (693)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~-~g~~~~ 596 (693)
+...|++++|+..|+++. +.+...|..+..++...|++++|+..++++++ +.|+ ...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchH
Confidence 888899999999888876 56778999999999999999999999999999 6775 5788888888888 566577
Q ss_pred H-----HHHHHHhHHhcCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcC--------
Q 043637 597 A-----LQFFDSMRCKYGIIPQLEHYECMIKLYCRYG--YMKELEDFVNRMPF-NPTVPMLRKIFDKCRKNG-------- 660 (693)
Q Consensus 597 A-----~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g-------- 660 (693)
| +..++++.+ -.+-+...|..+..+|.+.| +.++|++.++++.. +.+...+..++..|.+.|
T Consensus 254 A~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 7 588888875 22335677888888888888 68999999888743 445667888888888764
Q ss_pred -CccHHHHHHHHH-hhcCCCCCcchhhhhhcc
Q 043637 661 -YATLGEWAARRL-NELNPWAPFQFKITTNRF 690 (693)
Q Consensus 661 -~~~~A~~~~~~~-~~~~p~~~~~~~~l~~~y 690 (693)
.+++|...++++ .+++|.....|..++..+
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 258999999999 999999998888887655
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=6.8e-14 Score=130.53 Aligned_cols=212 Identities=10% Similarity=-0.037 Sum_probs=146.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 043637 444 VSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYT 523 (693)
Q Consensus 444 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (693)
..|..+...+...|++++|...|+++....+.+...+..+...+...|++++|...++++.+..
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---------------- 87 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD---------------- 87 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------
Confidence 3455555555556666666666665554444444555555555555555555555554444322
Q ss_pred hhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHH
Q 043637 524 KCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFD 602 (693)
Q Consensus 524 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (693)
+.+...+..+...+...|++++|.+.++++.+. .| +...+..+...+...|++++|...++
T Consensus 88 ----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 149 (243)
T 2q7f_A 88 ----------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQ 149 (243)
T ss_dssp ----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred ----------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 335667777888888899999999999998884 44 56778888899999999999999999
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 603 SMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 603 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
++.+ ..+.+...+..++..|.+.|++++|+..++++. .+.+...+..++..+...|++++|...++++++++|+++
T Consensus 150 ~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 227 (243)
T 2q7f_A 150 RAVE--LNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHM 227 (243)
T ss_dssp HHHH--HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCH
T ss_pred HHHH--hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchH
Confidence 9885 334567788889999999999999999998875 455677888999999999999999999999999999999
Q ss_pred cchhhhhhccc
Q 043637 681 FQFKITTNRFD 691 (693)
Q Consensus 681 ~~~~~l~~~y~ 691 (693)
..+..++.+..
T Consensus 228 ~~~~~~~~l~~ 238 (243)
T 2q7f_A 228 LALHAKKLLGH 238 (243)
T ss_dssp HHHHHHTC---
T ss_pred HHHHHHHHHHh
Confidence 99888877653
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.56 E-value=2.5e-13 Score=123.68 Aligned_cols=204 Identities=13% Similarity=-0.010 Sum_probs=99.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 043637 443 KVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVY 522 (693)
Q Consensus 443 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (693)
...+..+...+.+.|++++|+..|++.....+.+...+..+..++...|++++|...+++..+..+. +...+..+..++
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~ 83 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSEAY 83 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 3445555556666666666666666665555555566666666666666666666666666554332 233333444444
Q ss_pred HhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHH
Q 043637 523 TKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFF 601 (693)
Q Consensus 523 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 601 (693)
...+. . ... .....|++++|+..+++..+ +.|+ ...+..+..++...|++++|+..+
T Consensus 84 ~~~~~---------~--~~~---------~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 141 (217)
T 2pl2_A 84 VALYR---------Q--AED---------RERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASL 141 (217)
T ss_dssp HHHHH---------T--CSS---------HHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhhh---------h--hhh---------hcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHH
Confidence 33300 0 000 00011555555555555555 3443 344555555555566666666666
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHH
Q 043637 602 DSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRL 672 (693)
Q Consensus 602 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 672 (693)
+++.+. . .++..+..+..+|...|++++|+..+++.. .+.+...+..+...+...|++++|...++++
T Consensus 142 ~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 142 KQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 655542 3 455555555555666666666665555553 2344445555555555566666665555544
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.56 E-value=5.6e-13 Score=136.05 Aligned_cols=372 Identities=8% Similarity=-0.056 Sum_probs=235.0
Q ss_pred HHHHHcCChhHHHhhhcCCCC-CCchhHHHHHHHHHhcCCH---HHHHHHHhhCCCCCcccHHHHHHHHHhCC-----CH
Q 043637 287 EMYVKCGRLEDARGLLDQPDE-RNIISWTSIVSGYAISGRI---REARELFNEMPERNVISWNAMLAGYTRSL-----LW 357 (693)
Q Consensus 287 ~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~ 357 (693)
..+.+.|++++|...|++..+ .+...+..+...|...|+. ++|...|+...+.+...+..+...+...+ ++
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCH
Confidence 334445555555555544332 2333444444445555555 67777777776666666777777555544 67
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchh---hHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHH-
Q 043637 358 KEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIK---MGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIW- 433 (693)
Q Consensus 358 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~- 433 (693)
++|+.+|++..+.|... .+..+-..+...+..+ .+.+.+......| +......+...|...+.++.+...
T Consensus 91 ~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 91 HEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred HHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHH
Confidence 88888888888866433 4444444554444433 3444444444444 345666777788888865554444
Q ss_pred --HHhhcCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHhhhCCCCCHHHHHHHHHHhccc----CChHHHHHHHHHHH
Q 043637 434 --FYQMSQRRDKVSWNAVLTGYARRG---QSEEAMTSFSEMQWETRPSKFTFETLLAACANI----SSLEQGKQIHCFVI 504 (693)
Q Consensus 434 --~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~ 504 (693)
+.+.....+..++..+...|...| +.++|++.|++....+.++...+..+...|... ++.++|...|++..
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 333344455668888999999999 899999999999999888888777777777665 79999999999987
Q ss_pred HhCCCcchhHHHHHHHH-H--HhhCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHhCC-----ChHHHHHHHHHHHHCCCC
Q 043637 505 RNCYEINVVCRGALVEV-Y--TKCCCLEYAIRVFKESS-SLDVIICNSMILGFCHNE-----RGREALEVFGLMKKEGIK 575 (693)
Q Consensus 505 ~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~m~~~g~~ 575 (693)
.| ++..+..+... | ...++.++|...|++.. ..+...+..+...|. .| ++++|.+.|++.. .|
T Consensus 245 -~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g-- 316 (452)
T 3e4b_A 245 -PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR-- 316 (452)
T ss_dssp -GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT--
T ss_pred -CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC--
Confidence 33 45556666666 3 46889999999999877 557778888888877 44 8999999999877 33
Q ss_pred CChHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHH
Q 043637 576 PDHITFHGILLACIH----EGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCR----YGYMKELEDFVNRMPFNPTVP 647 (693)
Q Consensus 576 p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 647 (693)
+...+..|...|.. ..++++|...+++..+ .| ++.....|...|.. ..+.++|..++++....++..
T Consensus 317 -~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 317 -EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR-NG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE 391 (452)
T ss_dssp -CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT-TT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH
T ss_pred -CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh-hC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 55667777766665 4499999999999875 34 34455667777764 568999999999887666666
Q ss_pred hHHHHHHHHHh--cCCccHHHHHHHHHhhcCC
Q 043637 648 MLRKIFDKCRK--NGYATLGEWAARRLNELNP 677 (693)
Q Consensus 648 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~p 677 (693)
....+...... .++..+|...++...+-.|
T Consensus 392 a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~ 423 (452)
T 3e4b_A 392 ANDLATQLEAPLTPAQRAEGQRLVQQELAARG 423 (452)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 54444443322 3466777777777766544
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=3.7e-13 Score=126.32 Aligned_cols=210 Identities=12% Similarity=0.017 Sum_probs=151.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 043637 443 KVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVY 522 (693)
Q Consensus 443 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 522 (693)
...|..+...+...|++++|.+.|+++....+.+...+..+...+...|++++|...++++.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD--------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---------------
Confidence 34556666666667777777777666655444445555555555555555555555555554432
Q ss_pred HhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHH
Q 043637 523 TKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFF 601 (693)
Q Consensus 523 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 601 (693)
+.+...+..+...+...|++++|.+.++++.+.+..|+ ...+..+...+...|++++|...+
T Consensus 102 -----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (252)
T 2ho1_A 102 -----------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYF 164 (252)
T ss_dssp -----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 23555677777888888888888888888877444564 467777788888999999999999
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCC
Q 043637 602 DSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWA 679 (693)
Q Consensus 602 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 679 (693)
+++.+. .+.+...+..++..|.+.|++++|...++++. .+.+...+..+...+...|+.++|...+++++++.|++
T Consensus 165 ~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 165 EKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 988752 33457778888889999999999999988774 34566677788888889999999999999999999988
Q ss_pred Ccchhhh
Q 043637 680 PFQFKIT 686 (693)
Q Consensus 680 ~~~~~~l 686 (693)
+.....+
T Consensus 243 ~~~~~~l 249 (252)
T 2ho1_A 243 LEYQEFQ 249 (252)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665443
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.56 E-value=1.1e-12 Score=124.55 Aligned_cols=231 Identities=10% Similarity=-0.109 Sum_probs=178.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcc----cCChHHHHHHHHHHHHhCCCcchhHHHH
Q 043637 442 DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACAN----ISSLEQGKQIHCFVIRNCYEINVVCRGA 517 (693)
Q Consensus 442 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 517 (693)
+..++..+...+...|++++|++.|++....+ +...+..+...+.. .+++++|...+++..+.+ +...+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 34455566666667777777777777766532 33455666666666 777777777777777654 5566667
Q ss_pred HHHHHHh----hCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 043637 518 LVEVYTK----CCCLEYAIRVFKESS-SLDVIICNSMILGFCH----NERGREALEVFGLMKKEGIKPDHITFHGILLAC 588 (693)
Q Consensus 518 l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 588 (693)
+...|.. .+++++|...+++.. ..+...+..+...|.. .+++++|++.+++..+.+ +...+..+...|
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 7777777 788888888877665 4467788888888888 899999999999999965 556777777888
Q ss_pred hc----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHhHHHHHHHHHh--
Q 043637 589 IH----EGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCR----YGYMKELEDFVNRMPFNPTVPMLRKIFDKCRK-- 658 (693)
Q Consensus 589 ~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~-- 658 (693)
.. .+++++|...+++..+. .++..+..+...|.+ .+++++|+..+++.....+...+..+...|..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 87 89999999999999862 256778889999999 99999999999988655567788888899988
Q ss_pred --cCCccHHHHHHHHHhhcCCCCCcchh
Q 043637 659 --NGYATLGEWAARRLNELNPWAPFQFK 684 (693)
Q Consensus 659 --~g~~~~A~~~~~~~~~~~p~~~~~~~ 684 (693)
.+++++|...++++.++.|+++....
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~~~a~~~l 260 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGAKGACDIL 260 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 89999999999999999996554443
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=4e-13 Score=123.53 Aligned_cols=205 Identities=12% Similarity=0.061 Sum_probs=142.6
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhC-
Q 043637 481 ETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHN- 556 (693)
Q Consensus 481 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~- 556 (693)
..+...+...|++++|...++++.+.... +...+..+..+|...|++++|...+++.. +.+...+..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 90 (225)
T 2vq2_A 12 TQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRL 90 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc
Confidence 33333444444444444444444433221 23344444445555555555555554433 34566777788888888
Q ss_pred CChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 043637 557 ERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELED 635 (693)
Q Consensus 557 g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 635 (693)
|++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..++..|.+.|++++|..
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 91 NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp CCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 999999999998888444454 467788888999999999999999998852 33457778888999999999999999
Q ss_pred HHHhCC--CC-CCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhh
Q 043637 636 FVNRMP--FN-PTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTN 688 (693)
Q Consensus 636 ~~~~~~--~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 688 (693)
.++++. .+ .+...+..+...+...|+.+.|...++.+.+.+|+++.....+.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 224 (225)
T 2vq2_A 169 YFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLTG 224 (225)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHhcc
Confidence 998875 34 566677777777888999999999999999999988877666543
No 46
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.55 E-value=1.4e-13 Score=125.28 Aligned_cols=177 Identities=11% Similarity=-0.122 Sum_probs=153.8
Q ss_pred cchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHH
Q 043637 510 INVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGIL 585 (693)
Q Consensus 510 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~ 585 (693)
++...+..+...+.+.|++++|...|++.. +.+...+..+...+...|++++|+..+++..+ +.|+ ...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHH
Confidence 355666777778888888888888888755 55677899999999999999999999999999 5675 57888888
Q ss_pred HHHhcc-----------CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHH
Q 043637 586 LACIHE-----------GNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKI 652 (693)
Q Consensus 586 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 652 (693)
.++... |++++|+..++++.+. .+-+...+..+..+|...|++++|+..+++.. . .++..+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHH
Confidence 999999 9999999999999852 33457788899999999999999999999874 4 778899999
Q ss_pred HHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhccc
Q 043637 653 FDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 653 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
+..+...|++++|...++++++++|+++..+..++.+|.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~ 196 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALL 196 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999998875
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=2.1e-13 Score=129.88 Aligned_cols=221 Identities=8% Similarity=-0.116 Sum_probs=155.5
Q ss_pred cCChHHHHHHHHHhhhCC----CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHH
Q 043637 456 RGQSEEAMTSFSEMQWET----RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYA 531 (693)
Q Consensus 456 ~~~~~~a~~~~~~~~~~~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 531 (693)
.|++++|++.|+++.... +.+...+..+..++...|++++|...++++.+.... +...+..+..+|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHH
Confidence 356677777777765543 123456666677777777777777777777765433 556677777777777777777
Q ss_pred HHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 043637 532 IRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKY 608 (693)
Q Consensus 532 ~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 608 (693)
...+++.. +.+...+..+...+...|++++|.+.++++.+ +.|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 77777665 44567788888888888888888888888888 5666555555555667778888888888777752
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC-C-----CHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcc
Q 043637 609 GIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFN-P-----TVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQ 682 (693)
Q Consensus 609 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 682 (693)
.+++...+ .++..+...++.++|...+++.... + +...+..++..+...|++++|...++++++++|++...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 33444443 3666777778888888888776522 1 14567778888888888888888888888888876553
No 48
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.52 E-value=5.6e-12 Score=128.61 Aligned_cols=184 Identities=9% Similarity=-0.050 Sum_probs=111.1
Q ss_pred HHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCCh---hhHHHhhccCCCCCcccHHHHHHHHHhCC-
Q 043637 47 HLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNL---DDARGLFDEMPERDGGSWNAMLGAYTQNG- 122 (693)
Q Consensus 47 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~- 122 (693)
.+...+.+.|++++|.++|+.+.+.| ++..+..+...|...|+. ++|...|++..+.++..+..|...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 46677788899999999999998886 345555677777778888 99999999887778888888888666665
Q ss_pred ----ChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCCh---HHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCC---
Q 043637 123 ----FPGRTLELFLDMNHSGVSANQITYANVLRSSAEELEL---GVSKQLHGLIVKRGFCGNVILESSLVDAYGKCM--- 192 (693)
Q Consensus 123 ----~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g--- 192 (693)
++++|+..|++..+.|.. ..+..+...+...+.. ..+.+.+....+.| +......|...|...+
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 778999999999887633 2566666666655443 33455555555554 3455566666666666
Q ss_pred -CHHHHHHHHhccCCCCcccHHHHHHHHHhcC---CchHHHHHHHHHHHCC
Q 043637 193 -VMTDARRMFDDIQNKNAVSWNVIVRRYLVAG---NGKEAVVMFFKMLRED 239 (693)
Q Consensus 193 -~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g 239 (693)
+.+.+..++......+..++..|...+...| +.++|++.|++..+.|
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG 209 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC
Confidence 4455555666666666667888888888888 7788888888877765
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.51 E-value=3.5e-12 Score=121.19 Aligned_cols=240 Identities=12% Similarity=0.009 Sum_probs=184.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhcCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CC--CHHHHHHHHHHhc
Q 043637 414 SNALLDMYRKCGNLRSARIWFYQMSQR-R-DKVSWNAVLTGYARRGQSEEAMTSFSEMQWET-RP--SKFTFETLLAACA 488 (693)
Q Consensus 414 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p--~~~~~~~ll~~~~ 488 (693)
.......+...|++++|+..+.+.+.. | +...+..+...+...|++++|++.+++..... .| ....+..+..++.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 444566777888888888888777652 3 45578888888888999999999998887643 22 2445788888899
Q ss_pred ccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHH
Q 043637 489 NISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEV 565 (693)
Q Consensus 489 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~ 565 (693)
..|++++|...+++..+.... +...+..+..+|...|++++|...+++.. +.+...|..+...+...+++++|.+.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886544 56788899999999999999999999887 45666777777344555699999999
Q ss_pred HHHHHHCCCCCC-hHHHHHHHHHHhccCc---HHHHHHHHHHhHHhcCCCCCh------hHHHHHHHHHHhcCChHHHHH
Q 043637 566 FGLMKKEGIKPD-HITFHGILLACIHEGN---VKLALQFFDSMRCKYGIIPQL------EHYECMIKLYCRYGYMKELED 635 (693)
Q Consensus 566 ~~~m~~~g~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~ 635 (693)
++++.+ +.|+ ...+..+..++...|+ +++|...++++.+.....|+. ..|..+...|.+.|++++|..
T Consensus 165 ~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 165 FVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999 5675 5777778888888888 888999999887643334442 577889999999999999999
Q ss_pred HHHhCC--CCCCHHhHHHHHHHH
Q 043637 636 FVNRMP--FNPTVPMLRKIFDKC 656 (693)
Q Consensus 636 ~~~~~~--~~~~~~~~~~l~~~~ 656 (693)
.++++. .+.++..+..+....
T Consensus 243 ~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 243 AWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHHHHhcCccHHHHHHHhhhhh
Confidence 999885 444555555444433
No 50
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.50 E-value=2.5e-12 Score=121.03 Aligned_cols=223 Identities=11% Similarity=-0.013 Sum_probs=137.8
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhC--CCCchhHHHHHHHH
Q 043637 343 SWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRND--YSSNIFVSNALLDM 420 (693)
Q Consensus 343 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 420 (693)
.+..+...+...|++++|+..|++..+.. .+...+..+...+...|+++.|...++...+.. ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-------- 76 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK-------- 76 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH--------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH--------
Confidence 45556666667777777777777766655 445555555555555555555555555544321 000100
Q ss_pred HHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHH
Q 043637 421 YRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIH 500 (693)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 500 (693)
....++..+...+...|++++|.+.|++..... |+. ..+...|++++|...+
T Consensus 77 --------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~-------~~~~~~~~~~~a~~~~ 128 (258)
T 3uq3_A 77 --------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTA-------DILTKLRNAEKELKKA 128 (258)
T ss_dssp --------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCH-------HHHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-chh-------HHHHHHhHHHHHHHHH
Confidence 002344445555555555555555555554332 221 2233445566666666
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 043637 501 CFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD 577 (693)
Q Consensus 501 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 577 (693)
+.+...... +...+..+...+...|++++|...+++.. +.+...|..+...+...|++++|.+.+++..+ ..|+
T Consensus 129 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~ 205 (258)
T 3uq3_A 129 EAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPN 205 (258)
T ss_dssp HHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCHH
Confidence 666553322 44556666666777777777777776654 45667788888888888999999999988888 4554
Q ss_pred -hHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 578 -HITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 578 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
...+..+..++...|++++|...++++.+
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 57788888888899999999999888875
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.47 E-value=7.5e-13 Score=126.04 Aligned_cols=216 Identities=8% Similarity=-0.123 Sum_probs=112.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhh
Q 043637 446 WNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKC 525 (693)
Q Consensus 446 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (693)
+..+...+...|++++|.+.|++.....+.+...+..+..++...|++++|...++++.+.... +...+..+..+|...
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~ 124 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYG 124 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHh
Confidence 4444444444555555555555544443444445555555555555555555555555543322 344455555555555
Q ss_pred CCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHH
Q 043637 526 CCLEYAIRVFKESS--SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDS 603 (693)
Q Consensus 526 ~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 603 (693)
|++++|...++++. .|+.......+..+...|++++|...+++.... .+++...+ .++..+...++.++|...+++
T Consensus 125 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~ 202 (275)
T 1xnf_A 125 GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGW-NIVEFYLGNISEQTLMERLKA 202 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHH-HHHHHHTTSSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHH-HHHHHHHHhcCHHHHHHHHHH
Confidence 55555555555544 233222333333345557777777777666653 22233333 355566666677777777766
Q ss_pred hHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCCccHHHHHH
Q 043637 604 MRCKYGIIPQ-----LEHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVPMLRKIFDKCRKNGYATLGEWAA 669 (693)
Q Consensus 604 ~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 669 (693)
+.. ..|. ...+..++..|.+.|++++|...++++. ..|+. +.....++...|++++|...+
T Consensus 203 ~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 203 DAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred Hhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 642 1221 4556667777777777777777777664 22321 222344555666666666554
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=1.1e-12 Score=116.31 Aligned_cols=167 Identities=9% Similarity=-0.063 Sum_probs=139.9
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHH
Q 043637 511 NVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILL 586 (693)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~ 586 (693)
+..+|..+...|.+.|++++|+..|++.. +.+...|..+..++...|++++|...+.+... ..|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHH
Confidence 45566777777777777777777777665 55677888899999999999999999999988 4564 567777778
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccH
Q 043637 587 ACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATL 664 (693)
Q Consensus 587 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 664 (693)
.+...++++.|...+++... -.+.+...+..+..+|.+.|++++|+..+++.. .+.+...+..++..+...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 99999999999999999985 344567788889999999999999999999875 46677889999999999999999
Q ss_pred HHHHHHHHhhcCCCCCc
Q 043637 665 GEWAARRLNELNPWAPF 681 (693)
Q Consensus 665 A~~~~~~~~~~~p~~~~ 681 (693)
|...++++++++|+++.
T Consensus 160 A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHhCCccCHH
Confidence 99999999999997643
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.46 E-value=1.7e-12 Score=120.90 Aligned_cols=196 Identities=10% Similarity=0.024 Sum_probs=116.6
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 043637 409 SNIFVSNALLDMYRKCGNLRSARIWFYQMSQR--RDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAA 486 (693)
Q Consensus 409 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~ 486 (693)
.....+..+...+...|++++|...+.+.+.. .+...+..+...+...|++++|++.+++.....+.+...+..+...
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 35567778888899999999999999888763 3677888899999999999999999999987777778888888889
Q ss_pred hcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 043637 487 CANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVF 566 (693)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 566 (693)
+...|++++|...++++.+.... +...+ ..+...+...|++++|...+
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~-------------------------------~~~a~~~~~~~~~~~A~~~~ 148 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGME-NGDLF-------------------------------YMLGTVLVKLEQPKLALPYL 148 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCC-SHHHH-------------------------------HHHHHHHHHTSCHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHH-------------------------------HHHHHHHHHhccHHHHHHHH
Confidence 99999999999999888875432 33334 44444455555555555555
Q ss_pred HHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 567 GLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 567 ~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
+++.+. .| +...+..+...+...|++++|...++++.+. .+.+...+..++.+|.+.|++++|...++++
T Consensus 149 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 149 QRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555542 23 2344555555555555555555555555531 2233445555555555555555555555554
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.45 E-value=1.3e-11 Score=115.65 Aligned_cols=195 Identities=10% Similarity=-0.053 Sum_probs=129.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHhhcC--CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhc
Q 043637 411 IFVSNALLDMYRKCGNLRSARIWFYQMSQ--RRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACA 488 (693)
Q Consensus 411 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~ 488 (693)
...+..+...+...|++++|...+.+.+. ..+...+..+...+...|++++|.+.++++....+.+...+..+...+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 56788888999999999999999988876 3467788999999999999999999999998776667788888888888
Q ss_pred ccCChHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 043637 489 NISSLEQGKQIHCFVIRNCYEI-NVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFG 567 (693)
Q Consensus 489 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 567 (693)
..|++++|...++++.+.+..| +...+.. +...+...|++++|.+.++
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-------------------------------la~~~~~~g~~~~A~~~~~ 165 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFEN-------------------------------LGLVSLQMKKPAQAKEYFE 165 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHH-------------------------------HHHHHHHTTCHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHH-------------------------------HHHHHHHcCCHHHHHHHHH
Confidence 8999999988888877622222 2333444 4444445555555555555
Q ss_pred HHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 568 LMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 568 ~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
++.+. .| +...+..+...+...|++++|...++++.+ ..+.+...+..+...+.+.|+.++|...++++
T Consensus 166 ~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 166 KSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55442 23 234444455555555555555555555542 22233444445555555555555555555544
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.44 E-value=8.4e-12 Score=123.04 Aligned_cols=241 Identities=8% Similarity=-0.027 Sum_probs=180.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHhhcC-CC-ChhhHHHHHHHHHhcCC-hHHHHHHHHHhhhCCCCCHHHHHHHHHHhc
Q 043637 412 FVSNALLDMYRKCGNLRSARIWFYQMSQ-RR-DKVSWNAVLTGYARRGQ-SEEAMTSFSEMQWETRPSKFTFETLLAACA 488 (693)
Q Consensus 412 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~ 488 (693)
.++..+..++.+.|++++|+..+.+.+. .| +..+|+.+...+...|+ +++|+..|++.....+-+...|..+..++.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3455566667777778888777777665 23 56677777778888886 888888888877776667778888888888
Q ss_pred ccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHh-CCChHHH--
Q 043637 489 NISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCH-NERGREA-- 562 (693)
Q Consensus 489 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~-~g~~~~A-- 562 (693)
..|++++|...++++++.... +...|..+..++.+.|++++|+..++++. +.+...|+.+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~ 256 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVL 256 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred HccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHH
Confidence 888888888888888876554 66777778888888888888888888766 5567788888888888 5665777
Q ss_pred ---HHHHHHHHHCCCCCC-hHHHHHHHHHHhccC--cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC--------
Q 043637 563 ---LEVFGLMKKEGIKPD-HITFHGILLACIHEG--NVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYG-------- 628 (693)
Q Consensus 563 ---~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------- 628 (693)
++.+++.++ +.|+ ...|..+...+...| ++++|++.+.++ + ..+.+...+..++.+|.+.|
T Consensus 257 ~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 257 EREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 588888888 6775 577888888888877 688898888877 2 34456777888888988874
Q ss_pred -ChHHHHHHHHhC--CCCC-CHHhHHHHHHHHHh
Q 043637 629 -YMKELEDFVNRM--PFNP-TVPMLRKIFDKCRK 658 (693)
Q Consensus 629 -~~~~A~~~~~~~--~~~~-~~~~~~~l~~~~~~ 658 (693)
..++|+.+++++ ...| ....|..+...+..
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258899999988 3333 34567666665543
No 56
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.43 E-value=1.8e-11 Score=118.33 Aligned_cols=210 Identities=10% Similarity=0.033 Sum_probs=120.6
Q ss_pred HHHHHHHHhhcC--CCChhhHHHHHHHHH-------hcCCh-------HHHHHHHHHhhhC-CCCCHHHHHHHHHHhccc
Q 043637 428 RSARIWFYQMSQ--RRDKVSWNAVLTGYA-------RRGQS-------EEAMTSFSEMQWE-TRPSKFTFETLLAACANI 490 (693)
Q Consensus 428 ~~a~~~~~~~~~--~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~-~~p~~~~~~~ll~~~~~~ 490 (693)
++|...+.+.+. ..+...|..++..+. +.|++ ++|..+|++.... .+.+...+..++..+...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 455556665555 235556666665554 24664 6777777776663 344555666666666667
Q ss_pred CChHHHHHHHHHHHHhCCCcchh-HHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHH-hCCChHHHHHH
Q 043637 491 SSLEQGKQIHCFVIRNCYEINVV-CRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFC-HNERGREALEV 565 (693)
Q Consensus 491 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~-~~g~~~~A~~~ 565 (693)
|++++|..+|+++.+..+. +.. .|..++..+.+.|++++|..+|++.. +.+...|...+.... ..|+.++|.++
T Consensus 113 ~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777776663221 222 56666666666666666666666554 223334433332222 24666666666
Q ss_pred HHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 566 FGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP--QLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 566 ~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
|++..+ ..|+ ...|..++..+.+.|++++|..+|+++.....+.| ....|..++..+.+.|+.++|..+++++
T Consensus 192 ~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 192 FELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666 3343 45566666666666666666666666664212343 2445666666666666666666666655
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.43 E-value=6.4e-11 Score=112.37 Aligned_cols=220 Identities=10% Similarity=-0.062 Sum_probs=169.1
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 043637 410 NIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYAR----RGQSEEAMTSFSEMQWETRPSKFTFETLLA 485 (693)
Q Consensus 410 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~ 485 (693)
+...+..+...+...|++++|...+.+.....+..++..+...|.. .+++++|++.|++....+ +...+..+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~ 82 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGN 82 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHH
Confidence 3445566666777777777777777777765566677777777777 888888888888876654 5566777777
Q ss_pred Hhcc----cCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh----hCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHh-
Q 043637 486 ACAN----ISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTK----CCCLEYAIRVFKESS-SLDVIICNSMILGFCH- 555 (693)
Q Consensus 486 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~- 555 (693)
.+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++.. ..+...+..+...+..
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~ 159 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAG 159 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC
Confidence 7777 888888888888887764 56677777778887 888888888888766 3456677778888887
Q ss_pred ---CCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh--
Q 043637 556 ---NERGREALEVFGLMKKEGIKPDHITFHGILLACIH----EGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCR-- 626 (693)
Q Consensus 556 ---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-- 626 (693)
.+++++|.+.+++..+.+ +...+..+...|.. .+++++|...+++..+. + +...+..+...|.+
T Consensus 160 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 160 RGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-E---NGGGCFNLGAMQYNGE 232 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcCC
Confidence 889999999999988854 45677778888888 89999999999998852 2 26677788888888
Q ss_pred --cCChHHHHHHHHhCC
Q 043637 627 --YGYMKELEDFVNRMP 641 (693)
Q Consensus 627 --~g~~~~A~~~~~~~~ 641 (693)
.|+.++|...+++..
T Consensus 233 ~~~~~~~~A~~~~~~a~ 249 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGC 249 (273)
T ss_dssp SSSCCSTTHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHH
Confidence 899999999888764
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.43 E-value=1.8e-11 Score=112.27 Aligned_cols=199 Identities=8% Similarity=-0.005 Sum_probs=135.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 043637 444 VSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYT 523 (693)
Q Consensus 444 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (693)
..+..+...+...|++++|.+.++++....+.+...+..+..++...|++++|...++++.+.... +...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 345555566666666666666666665554445556666666666666666666666666664332 4455666666666
Q ss_pred hh-CCHHHHHHHHhcCCC-----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHH
Q 043637 524 KC-CCLEYAIRVFKESSS-----LDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKL 596 (693)
Q Consensus 524 ~~-~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 596 (693)
.. |++++|...++++.. .+...+..+...+...|++++|...++++.+ ..|+ ...+..+...+...|++++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA--AQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHcCCHHH
Confidence 66 777777666665432 2245677788888888888888888888887 3454 5777778888888888888
Q ss_pred HHHHHHHhHHhcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHH
Q 043637 597 ALQFFDSMRCKYGII-PQLEHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVP 647 (693)
Q Consensus 597 A~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~ 647 (693)
|...++++.+. .+ .+...+..+...+...|+.++|..+++.+. ..|+.+
T Consensus 166 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 166 ADYYFKKYQSR--VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHh--CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 88888888753 23 456667777777888888888888888764 344433
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=1.6e-12 Score=131.70 Aligned_cols=265 Identities=8% Similarity=-0.081 Sum_probs=151.8
Q ss_pred CHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCc----hhHHHHHHHHHHHcCChHHHHHHHHhhcCC----C----C
Q 043637 375 DQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSN----IFVSNALLDMYRKCGNLRSARIWFYQMSQR----R----D 442 (693)
Q Consensus 375 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~----~ 442 (693)
....+...-..+...|+++.|...++...+.+ +.+ ..++..+...+...|++++|...+.+.+.. + .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34445555566777888888888888877763 222 245667777777888888887766665431 1 2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhhhCC--CCC----HHHHHHHHHHhcccCC--------------------hHHH
Q 043637 443 KVSWNAVLTGYARRGQSEEAMTSFSEMQWET--RPS----KFTFETLLAACANISS--------------------LEQG 496 (693)
Q Consensus 443 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~p~----~~~~~~ll~~~~~~~~--------------------~~~a 496 (693)
..++..+...+...|++++|...+++..... .++ ..++..+...+...|+ ++.|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 3356666777777777777777777654322 111 3356666666777777 6777
Q ss_pred HHHHHHHHHh----CC-CcchhHHHHHHHHHHhhCCHHHHHHHHhcCC-----CCC----HHHHHHHHHHHHhCCChHHH
Q 043637 497 KQIHCFVIRN----CY-EINVVCRGALVEVYTKCCCLEYAIRVFKESS-----SLD----VIICNSMILGFCHNERGREA 562 (693)
Q Consensus 497 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~~~~g~~~~A 562 (693)
...+.+..+. +. ......+..+...|...|++++|...+++.. .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 6666665441 11 1112345555666666666666666665544 111 12555566666666666666
Q ss_pred HHHHHHHHHC----CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHH
Q 043637 563 LEVFGLMKKE----GIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ----LEHYECMIKLYCRYGYMKEL 633 (693)
Q Consensus 563 ~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A 633 (693)
...+++..+. +-.+. ..++..+...+...|++++|...++++.+.....++ ...+..+...|.+.|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 6666665541 10000 234555556666666666666666665532111111 33455556666666666666
Q ss_pred HHHHHhC
Q 043637 634 EDFVNRM 640 (693)
Q Consensus 634 ~~~~~~~ 640 (693)
...+++.
T Consensus 327 ~~~~~~a 333 (406)
T 3sf4_A 327 MHFAEKH 333 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.41 E-value=3e-12 Score=129.97 Aligned_cols=230 Identities=10% Similarity=-0.037 Sum_probs=132.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhC----C--CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHh----C-CCcchhH
Q 043637 446 WNAVLTGYARRGQSEEAMTSFSEMQWE----T--RPSKFTFETLLAACANISSLEQGKQIHCFVIRN----C-YEINVVC 514 (693)
Q Consensus 446 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 514 (693)
+..+...+...|++++|.+.+++.... + +.....+..+...+...|++++|...+++..+. + .......
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 334444444444444444444443221 1 112234444445555555555555555554432 1 1112334
Q ss_pred HHHHHHHHHhhCC-----------------HHHHHHHHhcCC---------CCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 043637 515 RGALVEVYTKCCC-----------------LEYAIRVFKESS---------SLDVIICNSMILGFCHNERGREALEVFGL 568 (693)
Q Consensus 515 ~~~l~~~~~~~~~-----------------~~~A~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 568 (693)
+..+...|...|+ +++|...+++.. ......+..+...+...|++++|.+.+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4555555666666 666655555432 11123666677777778888888877777
Q ss_pred HHHCCCCC---C----hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHH
Q 043637 569 MKKEGIKP---D----HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ----LEHYECMIKLYCRYGYMKELEDFV 637 (693)
Q Consensus 569 m~~~g~~p---~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 637 (693)
..+. .| + ..++..+...+...|++++|...++++.+...-..+ ...+..+..+|.+.|++++|...+
T Consensus 249 al~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 249 RLRI--AREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHH--HHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHH--HHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6652 22 1 125666777788888888888888777642111111 345667777788888888888887
Q ss_pred HhCCC----CCC----HHhHHHHHHHHHhcCCccHHHHHHHHHhhcCC
Q 043637 638 NRMPF----NPT----VPMLRKIFDKCRKNGYATLGEWAARRLNELNP 677 (693)
Q Consensus 638 ~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 677 (693)
++... .++ ...+..+...+...|++++|...+++++++.+
T Consensus 327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 327 NRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 76631 112 23566677777788888888888888877665
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.40 E-value=5.8e-12 Score=123.79 Aligned_cols=135 Identities=10% Similarity=-0.052 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----h
Q 043637 544 IICNSMILGFCHNERGREALEVFGLMKKE----GIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ----L 614 (693)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~ 614 (693)
..+..+...+...|++++|...+++..+. +..+. ..++..+...+...|++++|...+++..+.....++ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 36777788888888888888888887652 11111 236777788899999999999999888653221222 4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCC
Q 043637 615 EHYECMIKLYCRYGYMKELEDFVNRMP----FNPT----VPMLRKIFDKCRKNGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 678 (693)
..+..+...|...|++++|...+++.. ..++ ...+..+...+...|++++|...+++++++.|+
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 567778888999999999999988764 1122 336677888999999999999999999998774
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=6.1e-12 Score=127.39 Aligned_cols=292 Identities=13% Similarity=-0.003 Sum_probs=219.2
Q ss_pred cccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHhcccchhhHHHHHHHHHHh----CCCC-chh
Q 043637 341 VISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDID---QVTLGLILNVCAGLSEIKMGKEVHGFIHRN----DYSS-NIF 412 (693)
Q Consensus 341 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 412 (693)
...+......+...|++++|...|++..+.+.... ...+..+...+...|+++.|...++..... +..| ...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34556677889999999999999999988742211 245677778888999999999999987642 2222 355
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhcCC----CC----hhhHHHHHHHHHhcCC--------------------hHHHHH
Q 043637 413 VSNALLDMYRKCGNLRSARIWFYQMSQR----RD----KVSWNAVLTGYARRGQ--------------------SEEAMT 464 (693)
Q Consensus 413 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 464 (693)
++..+...+...|++++|...+.+.+.. ++ ..++..+...+...|+ +++|.+
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 7788889999999999998888877652 22 3478888899999999 999999
Q ss_pred HHHHhhhC----C--CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCC-c----chhHHHHHHHHHHhhCCHHHHHH
Q 043637 465 SFSEMQWE----T--RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYE-I----NVVCRGALVEVYTKCCCLEYAIR 533 (693)
Q Consensus 465 ~~~~~~~~----~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~ 533 (693)
.+++.... + +....++..+...+...|++++|...+++..+.... + ....+..+..+|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99886432 2 222356788888999999999999999998863211 1 23477888899999999999999
Q ss_pred HHhcCC-----CCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHhccCcHHHHHH
Q 043637 534 VFKESS-----SLD----VIICNSMILGFCHNERGREALEVFGLMKKE----GIKPD-HITFHGILLACIHEGNVKLALQ 599 (693)
Q Consensus 534 ~~~~~~-----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~ 599 (693)
.+++.. ..+ ..++..+...+...|++++|.+.+++..+. +-.+. ..++..+...|...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 998765 122 457888999999999999999999988762 11111 4577788899999999999999
Q ss_pred HHHHhHHhc---CCCC-ChhHHHHHHHHHHhcCChHH
Q 043637 600 FFDSMRCKY---GIIP-QLEHYECMIKLYCRYGYMKE 632 (693)
Q Consensus 600 ~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~ 632 (693)
.+++..+.. +..+ ...++..+...+...|+...
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999986521 1111 13456667777777776643
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=3.8e-11 Score=115.98 Aligned_cols=216 Identities=9% Similarity=-0.034 Sum_probs=134.2
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHhc-------ccCCh-------HHHHHHHHHHHHh-CCCcchhHHHHHHHHHHh
Q 043637 460 EEAMTSFSEMQWETRPSKFTFETLLAACA-------NISSL-------EQGKQIHCFVIRN-CYEINVVCRGALVEVYTK 524 (693)
Q Consensus 460 ~~a~~~~~~~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 524 (693)
++|...|++.....+.+...|..++..+. ..|+. ++|..++++.++. .+ -+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHh
Confidence 46666666665554555556665555543 24664 6777777777663 32 244566667777777
Q ss_pred hCCHHHHHHHHhcCC--CC-CHH-HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHh-ccCcHHHHH
Q 043637 525 CCCLEYAIRVFKESS--SL-DVI-ICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACI-HEGNVKLAL 598 (693)
Q Consensus 525 ~~~~~~A~~~~~~~~--~~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~-~~g~~~~A~ 598 (693)
.|++++|..+|++.. .| +.. .|..++..+.+.|++++|..+|++..+. .|+ ...|........ ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777655 22 233 6777777777777777777777777763 332 334433332221 257777777
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC----CC--CHHhHHHHHHHHHhcCCccHHHHHHHHH
Q 043637 599 QFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPF----NP--TVPMLRKIFDKCRKNGYATLGEWAARRL 672 (693)
Q Consensus 599 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 672 (693)
.+|+++.+. .+-++..|..++..+.+.|+.++|+.+|++... +| ....|..++......|+.+.|..+++++
T Consensus 190 ~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777642 233456666777777777777777777776642 22 3446666666677777777777777777
Q ss_pred hhcCCCCC
Q 043637 673 NELNPWAP 680 (693)
Q Consensus 673 ~~~~p~~~ 680 (693)
++..|+++
T Consensus 268 ~~~~p~~~ 275 (308)
T 2ond_A 268 FTAFREEY 275 (308)
T ss_dssp HHHTTTTT
T ss_pred HHHccccc
Confidence 77777544
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.37 E-value=1.7e-11 Score=125.88 Aligned_cols=209 Identities=9% Similarity=-0.108 Sum_probs=167.7
Q ss_pred hHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCCh-HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhc
Q 043637 459 SEEAMTSFSEMQWETRPSKFTFETLLAACANISSL-EQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKE 537 (693)
Q Consensus 459 ~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 537 (693)
+++++..+++.....+.+...+..+..++...|++ ++|...+++..+.... +...+..+..+|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56677777776655566788888889999999999 9999999998886544 567788888888888999999888887
Q ss_pred CC--CCCHHHHHHHHHHHHhC---------CChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhcc--------CcHHHH
Q 043637 538 SS--SLDVIICNSMILGFCHN---------ERGREALEVFGLMKKEGIKPD-HITFHGILLACIHE--------GNVKLA 597 (693)
Q Consensus 538 ~~--~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~--------g~~~~A 597 (693)
.. .|+...+..+...+... |++++|++.+++..+ +.|+ ...|..+..+|... |++++|
T Consensus 163 al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 163 ALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 66 56677888888888888 899999999999888 5664 57788888888888 889999
Q ss_pred HHHHHHhHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHH
Q 043637 598 LQFFDSMRCKYGII---PQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRL 672 (693)
Q Consensus 598 ~~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 672 (693)
+..++++.+. .+ .+...|..+..+|.+.|++++|+..|++.. .+.+...+..+...+...|++++|...++++
T Consensus 241 ~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 241 LSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999988752 22 367788888889999999999999988874 4556667888888888888888887766554
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.35 E-value=1.4e-11 Score=124.98 Aligned_cols=264 Identities=9% Similarity=-0.065 Sum_probs=161.0
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHhcccchhhHHHHHHHHHHh----CC-CCchhH
Q 043637 343 SWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQ----VTLGLILNVCAGLSEIKMGKEVHGFIHRN----DY-SSNIFV 413 (693)
Q Consensus 343 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 413 (693)
.+..+...+...|++++|+..|++..+.+.. +. ..+..+...+...|+++.|...++...+. +. +....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445566778888888888888888775322 22 24555555666666666666666655432 10 112233
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC------CCCHHHHHHHHHHh
Q 043637 414 SNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWET------RPSKFTFETLLAAC 487 (693)
Q Consensus 414 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~p~~~~~~~ll~~~ 487 (693)
+..+...|.. .|++++|.+.+++..... .....++..+...+
T Consensus 129 ~~~l~~~~~~--------------------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 129 SGNLGNTLKV--------------------------------MGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHH--------------------------------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------------------------------CCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 4444444444 444444444444432211 11223445555555
Q ss_pred cccCC-----------------hHHHHHHHHHHHHh----CC-CcchhHHHHHHHHHHhhCCHHHHHHHHhcCCC-----
Q 043637 488 ANISS-----------------LEQGKQIHCFVIRN----CY-EINVVCRGALVEVYTKCCCLEYAIRVFKESSS----- 540 (693)
Q Consensus 488 ~~~~~-----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----- 540 (693)
...|+ ++.|...+++..+. +. ......+..+...|...|++++|...+++...
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 55555 55565555554431 11 11234556666677777777777777766541
Q ss_pred CC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-------hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 043637 541 LD----VIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-------HITFHGILLACIHEGNVKLALQFFDSMRCKYG 609 (693)
Q Consensus 541 ~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 609 (693)
.+ ...+..+...+...|++++|...+++..+. .|+ ..++..+...+...|++++|...++++.+...
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL--AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 11 226777888888889999998888887662 221 35677778888999999999999988865211
Q ss_pred CCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 610 IIPQ----LEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 610 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
-.++ ...+..+...|.+.|++++|...+++..
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1112 3467778888999999999999888764
No 66
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=6e-11 Score=104.97 Aligned_cols=169 Identities=12% Similarity=0.004 Sum_probs=146.3
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHH
Q 043637 512 VVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLA 587 (693)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~ 587 (693)
...+..+...+...|++++|...++++. +.+...+..+...+...|++++|...++++.+. .| +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 3456667788889999999999999887 456778999999999999999999999999984 45 46788888899
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHH
Q 043637 588 CIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLG 665 (693)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 665 (693)
+...|++++|.+.++++.+ ..+.+...+..++..|.+.|++++|...++++. .+.+...+..++..+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAE--ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHh--cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999986 345567888899999999999999999999875 455677888999999999999999
Q ss_pred HHHHHHHhhcCCCCCcchh
Q 043637 666 EWAARRLNELNPWAPFQFK 684 (693)
Q Consensus 666 ~~~~~~~~~~~p~~~~~~~ 684 (693)
...++++++++|+++....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~ 182 (186)
T 3as5_A 164 LPHFKKANELDEGASVELA 182 (186)
T ss_dssp HHHHHHHHHHHHCCCGGGG
T ss_pred HHHHHHHHHcCCCchhhHh
Confidence 9999999999998776544
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.34 E-value=4e-09 Score=111.11 Aligned_cols=216 Identities=7% Similarity=-0.105 Sum_probs=151.5
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHH-HHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCC
Q 043637 462 AMTSFSEMQWETRPSKFTFETLLAACANISSLEQGK-QIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSS 540 (693)
Q Consensus 462 a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 540 (693)
+..+|++.....+-....|...+.-+...|+.+.|. .++++.....+ .+...+-..+....+.|+++.|.++|+++..
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445566655444445555655666566666766775 77777766433 2445555666666777777777777766541
Q ss_pred -------------C------------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCChHHHHHHHHHHhcc-Cc
Q 043637 541 -------------L------------DVIICNSMILGFCHNERGREALEVFGLMKKE-GIKPDHITFHGILLACIHE-GN 593 (693)
Q Consensus 541 -------------~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~-g~ 593 (693)
| ...+|...+....+.|+.+.|..+|++..+. + .+....|...+..-.+. ++
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCC
Confidence 2 1236888888888889999999999999885 2 11233444333333333 55
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-CC----CHHhHHHHHHHHHhcCCccHHHHH
Q 043637 594 VKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPF-NP----TVPMLRKIFDKCRKNGYATLGEWA 668 (693)
Q Consensus 594 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~ 668 (693)
.+.|.++|+...+. ++-++..+...++.....|+.+.|..+|++... .+ ....|..++..-...|+.+.+..+
T Consensus 486 ~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 486 TKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp CHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 89999999999974 444566677888888889999999999998763 22 245788888888899999999999
Q ss_pred HHHHhhcCCCCCc
Q 043637 669 ARRLNELNPWAPF 681 (693)
Q Consensus 669 ~~~~~~~~p~~~~ 681 (693)
.+++.+..|+++.
T Consensus 564 ~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 564 EKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHSTTCCH
T ss_pred HHHHHHhCCCCcH
Confidence 9999999997653
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.34 E-value=3.8e-11 Score=117.87 Aligned_cols=265 Identities=9% Similarity=-0.088 Sum_probs=157.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HhhHHHHHHHHhcccchhhHHHHHHHHHHh----CCCC-chhHH
Q 043637 344 WNAMLAGYTRSLLWKEALDFVFLMRKTTKDID----QVTLGLILNVCAGLSEIKMGKEVHGFIHRN----DYSS-NIFVS 414 (693)
Q Consensus 344 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~ 414 (693)
+......+...|++++|...|+++.+.... + ...+..+...+...|+++.|...++...+. +..+ ...++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 344556677888888888888888775321 2 234445555566666666666666554421 1111 12233
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC--CCC----HHHHHHHHHHhc
Q 043637 415 NALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWET--RPS----KFTFETLLAACA 488 (693)
Q Consensus 415 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~p~----~~~~~~ll~~~~ 488 (693)
.. +...+...|++++|.+.+++..... .++ ..++..+...+.
T Consensus 87 ~~--------------------------------l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 87 GN--------------------------------LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 134 (338)
T ss_dssp HH--------------------------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HH--------------------------------HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 34 4444444555555555444432211 111 224444555555
Q ss_pred ccCC--------------------hHHHHHHHHHHHHh----CC-CcchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---
Q 043637 489 NISS--------------------LEQGKQIHCFVIRN----CY-EINVVCRGALVEVYTKCCCLEYAIRVFKESSS--- 540 (693)
Q Consensus 489 ~~~~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--- 540 (693)
..|+ ++.|...+++.... +. ......+..+...+...|++++|...+++...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5555 55555555554331 11 11233556666677777777777777766541
Q ss_pred --CC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 043637 541 --LD----VIICNSMILGFCHNERGREALEVFGLMKKE----GIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYG 609 (693)
Q Consensus 541 --~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 609 (693)
++ ..++..+...+...|++++|.+.+++..+. +-.+. ..++..+...+...|++++|...++++.+...
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 11 226777888888888999998888887652 11111 35677777888999999999999988865211
Q ss_pred CCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 610 IIPQ----LEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 610 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
...+ ...+..+...|.+.|++++|...+++..
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 1112 3467778888999999999999888653
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.33 E-value=7.3e-11 Score=118.22 Aligned_cols=229 Identities=10% Similarity=-0.006 Sum_probs=164.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCC--CC----CHHHHHHHHHHhcccCChHHHHHHHHHHHHhC--C----CcchhHHH
Q 043637 449 VLTGYARRGQSEEAMTSFSEMQWET--RP----SKFTFETLLAACANISSLEQGKQIHCFVIRNC--Y----EINVVCRG 516 (693)
Q Consensus 449 l~~~~~~~~~~~~a~~~~~~~~~~~--~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 516 (693)
....+...|++++|++.+++..... .+ ...++..+..++...|+++.|...+.+..+.. . .....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3445566777777777777764431 12 23466667777777777777777777766521 1 11234566
Q ss_pred HHHHHHHhhCCHHHHHHHHhcCC-----CCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-hHHHH
Q 043637 517 ALVEVYTKCCCLEYAIRVFKESS-----SLD----VIICNSMILGFCHNERGREALEVFGLMKKE----GIKPD-HITFH 582 (693)
Q Consensus 517 ~l~~~~~~~~~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~ 582 (693)
.+..+|...|++++|...+++.. .++ ..++..+...|...|++++|++.+++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 77778888888888888877655 122 237888999999999999999999988772 23243 47788
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcC---CCCChhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-HHhHHHHHHH
Q 043637 583 GILLACIHEGNVKLALQFFDSMRCKYG---IIPQLEHYECMIKLYCRYGY---MKELEDFVNRMPFNPT-VPMLRKIFDK 655 (693)
Q Consensus 583 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~ 655 (693)
.+...+...|++++|...+++..+... .+.....+..+...|...|+ .++|+.++++....++ ...+..++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 888999999999999999999875221 11222335668888899999 8999999999864333 3367778899
Q ss_pred HHhcCCccHHHHHHHHHhhcCC
Q 043637 656 CRKNGYATLGEWAARRLNELNP 677 (693)
Q Consensus 656 ~~~~g~~~~A~~~~~~~~~~~p 677 (693)
|...|++++|...+++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998655
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=4e-12 Score=123.45 Aligned_cols=233 Identities=11% Similarity=0.019 Sum_probs=135.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhC-------C-CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHh------CC-Cc
Q 043637 446 WNAVLTGYARRGQSEEAMTSFSEMQWE-------T-RPSKFTFETLLAACANISSLEQGKQIHCFVIRN------CY-EI 510 (693)
Q Consensus 446 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~ 510 (693)
+..+...+...|++++|...++++... . +.....+..+...+...|++++|...++++.+. +. ..
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 444444444555555555555444331 1 222334445555555555555555555555442 11 12
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCC-----------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC------C
Q 043637 511 NVVCRGALVEVYTKCCCLEYAIRVFKESS-----------SLDVIICNSMILGFCHNERGREALEVFGLMKKE------G 573 (693)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g 573 (693)
....+..+...|...|++++|...+++.. +.....+..+...+...|++++|.+.++++.+. +
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 34455556666666666666666665443 112346777888899999999999999988773 2
Q ss_pred CCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhc------CCCCC-h------hHHHHHHHHHHhcCChHHHHHHHHh
Q 043637 574 IKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKY------GIIPQ-L------EHYECMIKLYCRYGYMKELEDFVNR 639 (693)
Q Consensus 574 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~p~-~------~~~~~l~~~~~~~g~~~~A~~~~~~ 639 (693)
..|+ ..++..+...+...|++++|...++++.+.. ...+. . ..+..+...+...+.+.+|...+++
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 269 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKA 269 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-----
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhh
Confidence 2443 3577888899999999999999999987521 11111 1 1222233344455666666666666
Q ss_pred CCC--CCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCC
Q 043637 640 MPF--NPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 640 ~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 678 (693)
... +.....+..++..|...|++++|...+++++++.|+
T Consensus 270 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 270 CKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 652 233457888999999999999999999999999885
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=3.4e-11 Score=110.77 Aligned_cols=206 Identities=7% Similarity=-0.077 Sum_probs=158.0
Q ss_pred CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHH
Q 043637 474 RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMI 550 (693)
Q Consensus 474 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~ 550 (693)
+.+...+......+...|++++|...|++..+....++...+..+..++...|++++|+..+++.. +.+...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 445678888888999999999999999999987764566677778889999999999999998766 44566888899
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCC-h-------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHH
Q 043637 551 LGFCHNERGREALEVFGLMKKEGIKPD-H-------ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ---LEHYEC 619 (693)
Q Consensus 551 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~ 619 (693)
..+...|++++|+..+++..+ +.|+ . ..|..+...+...|++++|++.++++.+ ..|+ ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHH
Confidence 999999999999999999988 5665 3 3467777888889999999999998874 3454 566777
Q ss_pred HHHHHHhcCCh--HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhccc
Q 043637 620 MIKLYCRYGYM--KELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 620 l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
+..+|...|+. ++|..+ ...+...+.... ....+.+++|...++++++++|+++.....|+.+..
T Consensus 159 l~~~~~~~~~~~~~~a~~~-----~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 159 LGVLFYNNGADVLRKATPL-----ASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGG-----TTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhc-----ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 88888766654 232221 122344443322 334567899999999999999999999888887653
No 72
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.32 E-value=5e-08 Score=102.84 Aligned_cols=226 Identities=5% Similarity=-0.103 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHH-HHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhh
Q 043637 359 EALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGK-EVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQM 437 (693)
Q Consensus 359 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 437 (693)
.+..+|++.... .+-....|......+...|+.+.|. .+++..... ++.+...+...+....+.|+++.|..++...
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345566666554 2234555555555566667777775 787777653 3556666677777777888888887777666
Q ss_pred cCC------------CC------------hhhHHHHHHHHHhcCChHHHHHHHHHhhhC-CCCCHHHHHHHHHHhcc-cC
Q 043637 438 SQR------------RD------------KVSWNAVLTGYARRGQSEEAMTSFSEMQWE-TRPSKFTFETLLAACAN-IS 491 (693)
Q Consensus 438 ~~~------------~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~p~~~~~~~ll~~~~~-~~ 491 (693)
+.. |+ ...|...+....+.|+.+.|..+|.+.... +.+....|......-.+ .+
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence 542 21 225666777777778888888888887766 32223333322222222 34
Q ss_pred ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--C----CHHHHHHHHHHHHhCCChHHHHHH
Q 043637 492 SLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSS--L----DVIICNSMILGFCHNERGREALEV 565 (693)
Q Consensus 492 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~A~~~ 565 (693)
+.+.|..+|+...+.-. -+...+...++.....|+.+.|..+|++... + ....|..++.--.+.|+.+.+.++
T Consensus 485 d~e~Ar~ife~~Lk~~p-~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFA-TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp CCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred CHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 57888888888777522 2455566777777777888888888887662 2 234677777777788888888888
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHh
Q 043637 566 FGLMKKEGIKPDHITFHGILLACI 589 (693)
Q Consensus 566 ~~~m~~~g~~p~~~~~~~l~~~~~ 589 (693)
.+++.+ ..|+......++.-|.
T Consensus 564 ~~R~~~--~~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 564 EKRFFE--KFPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHH--HSTTCCHHHHHHHHTC
T ss_pred HHHHHH--hCCCCcHHHHHHHHhc
Confidence 888887 4566555555555543
No 73
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.30 E-value=2.2e-10 Score=101.18 Aligned_cols=161 Identities=8% Similarity=0.006 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 043637 444 VSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYT 523 (693)
Q Consensus 444 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (693)
..|..+...|.+.|++++|++.|++..+..+-+...+..+..++...|+++.|...+........
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~--------------- 70 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT--------------- 70 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc---------------
Confidence 34455555555555555555555555444444444555555555555555555555554444332
Q ss_pred hhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHH
Q 043637 524 KCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFD 602 (693)
Q Consensus 524 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 602 (693)
.+...+..+...+...++++.|.+.+.+..+ +.|+ ...+..+..++.+.|++++|++.++
T Consensus 71 -----------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 131 (184)
T 3vtx_A 71 -----------------TSAEAYYILGSANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYE 131 (184)
T ss_dssp -----------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHH
Confidence 2333344444444444555555555555444 2332 3444444455555555555555555
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 603 SMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 603 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
++.+. .+.+...+..++.+|.+.|++++|+..|++.
T Consensus 132 ~~l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 167 (184)
T 3vtx_A 132 KTISI--KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKA 167 (184)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHh--cchhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55431 1223444445555555555555555555444
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.27 E-value=9.2e-11 Score=120.44 Aligned_cols=208 Identities=11% Similarity=-0.043 Sum_probs=157.6
Q ss_pred HHHHHHHHhhcCC--CChhhHHHHHHHHHhcCCh-HHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHH
Q 043637 428 RSARIWFYQMSQR--RDKVSWNAVLTGYARRGQS-EEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVI 504 (693)
Q Consensus 428 ~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 504 (693)
+++...+.+.... .+...+..+...+...|++ ++|++.|++.....+.+...+..+..++...|++++|...+++..
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3343444443332 2455666677777777777 777777777766656667777777777777888888888877777
Q ss_pred HhCCCcchhHHHHHHHHHHhh---------CCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhC--------CChHHHHH
Q 043637 505 RNCYEINVVCRGALVEVYTKC---------CCLEYAIRVFKESS---SLDVIICNSMILGFCHN--------ERGREALE 564 (693)
Q Consensus 505 ~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~--------g~~~~A~~ 564 (693)
+.. |+...+..+..+|... |++++|...+++.. +.+...|..+..+|... |++++|++
T Consensus 165 ~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 165 THC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS 242 (474)
T ss_dssp TTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 754 4456777777777777 88888888887765 55677888888888888 88999999
Q ss_pred HHHHHHHCCCCC----ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 565 VFGLMKKEGIKP----DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 565 ~~~~m~~~g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
.|++..+ +.| +...|..+..+|...|++++|.+.++++.+. .+.+...+..+..++...|+.++|+..+.++
T Consensus 243 ~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 243 AYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999998 566 5678888889999999999999999999852 3345667888889999999999999887776
Q ss_pred C
Q 043637 641 P 641 (693)
Q Consensus 641 ~ 641 (693)
.
T Consensus 319 ~ 319 (474)
T 4abn_A 319 K 319 (474)
T ss_dssp C
T ss_pred c
Confidence 4
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.22 E-value=7e-09 Score=103.48 Aligned_cols=228 Identities=10% Similarity=0.007 Sum_probs=164.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCC--CCC----HHHHHHHHHHhcccCChHHHHHHHHHHHHhC--C---C-cchhHHH
Q 043637 449 VLTGYARRGQSEEAMTSFSEMQWET--RPS----KFTFETLLAACANISSLEQGKQIHCFVIRNC--Y---E-INVVCRG 516 (693)
Q Consensus 449 l~~~~~~~~~~~~a~~~~~~~~~~~--~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~~ 516 (693)
....+...|++++|+..|++..... .++ ..++..+..++...|+++.|...+.+..+.. . . ....++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 3444567788888888887765432 222 3466677777888888888888887776621 1 1 1245667
Q ss_pred HHHHHHHhhCCHHHHHHHHhcCCC-----CC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHCC---CCC-ChHHHHH
Q 043637 517 ALVEVYTKCCCLEYAIRVFKESSS-----LD----VIICNSMILGFCHNERGREALEVFGLMKKEG---IKP-DHITFHG 583 (693)
Q Consensus 517 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g---~~p-~~~~~~~ 583 (693)
.+..+|...|++++|...+++... ++ ..++..+..++...|++++|++.+++..+.. ..| ...++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 778888888888888888876541 22 2467788899999999999999999887710 123 3567888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-HHhHHHHHHHH
Q 043637 584 ILLACIHEGNVKLALQFFDSMRCKYGIIPQ---LEHYECMIKLYCRYGY---MKELEDFVNRMPFNPT-VPMLRKIFDKC 656 (693)
Q Consensus 584 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~~ 656 (693)
+...+.+.|++++|...+++..+.....++ ...+..+...|...|+ .++|+..+++....++ ...+..++..|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 889999999999999999998863222222 3345666677778888 8999999998654333 33666788899
Q ss_pred HhcCCccHHHHHHHHHhhcC
Q 043637 657 RKNGYATLGEWAARRLNELN 676 (693)
Q Consensus 657 ~~~g~~~~A~~~~~~~~~~~ 676 (693)
...|++++|...++++++..
T Consensus 347 ~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998754
No 76
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.22 E-value=1e-09 Score=109.84 Aligned_cols=205 Identities=7% Similarity=-0.018 Sum_probs=107.8
Q ss_pred ccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 043637 342 ISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMY 421 (693)
Q Consensus 342 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 421 (693)
.++..+...|...|++++|+..+++..+.-...+ +. .+....+++.+..+|
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~--------------~~~~~~~~~~lg~~~ 194 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE---------------AY--------------NIRLLQCHSLFATNF 194 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS---------------TT--------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc---------------cc--------------hHHHHHHHHHHHHHH
Confidence 4677778888888888888888877654211000 00 000122344555556
Q ss_pred HHcCChHHHHHHHHhhcCC----CC----hhhHHHHHHHHHhcCChHHHHHHHHHhhh-----CC-CCCHHHHHHHHHHh
Q 043637 422 RKCGNLRSARIWFYQMSQR----RD----KVSWNAVLTGYARRGQSEEAMTSFSEMQW-----ET-RPSKFTFETLLAAC 487 (693)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-~p~~~~~~~ll~~~ 487 (693)
...|++++|+..+.+.+.- ++ ..++..+...|...|++++|++.+++... .. +....++..+..++
T Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 274 (383)
T 3ulq_A 195 LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIH 274 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 6666666665555554431 11 12455566666666666666666666543 22 22234455555555
Q ss_pred cccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHhCCC---hHHHH
Q 043637 488 ANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSL-DVIICNSMILGFCHNER---GREAL 563 (693)
Q Consensus 488 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g~---~~~A~ 563 (693)
...|++++|...+++..+.... ...+ ....+..+...+...|+ +++|+
T Consensus 275 ~~~g~~~~A~~~~~~al~~~~~----------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~al 326 (383)
T 3ulq_A 275 YKLGKIDKAHEYHSKGMAYSQK----------------------------AGDVIYLSEFEFLKSLYLSGPDEEAIQGFF 326 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH----------------------------HTCHHHHHHHHHHHHHHTSSCCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHH----------------------------cCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 5666666666555554431100 0000 01123445555666666 55555
Q ss_pred HHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 564 EVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 564 ~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
.++++. +..|+. ..+..+...|...|++++|...+++..+
T Consensus 327 ~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 327 DFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555543 233332 4555566777777777777777776654
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.20 E-value=1.7e-10 Score=123.14 Aligned_cols=163 Identities=10% Similarity=-0.035 Sum_probs=131.0
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHH
Q 043637 512 VVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLA 587 (693)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~ 587 (693)
...++.+..+|.+.|++++|++.|++.. +.+...|+.+..+|.+.|++++|++.|++..+ +.|+ ...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 4556666677777777777777777655 44567888888889999999999999999888 6775 5788888899
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHH
Q 043637 588 CIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLG 665 (693)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 665 (693)
+.+.|++++|++.++++.+. .+-+...|..+..+|.+.|++++|+..+++.. .+.+...+..++..+...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 99999999999999988752 23356788889999999999999999998875 455677888899999999999999
Q ss_pred HHHHHHHhhcCCC
Q 043637 666 EWAARRLNELNPW 678 (693)
Q Consensus 666 ~~~~~~~~~~~p~ 678 (693)
.+.+++++++.|+
T Consensus 165 ~~~~~kal~l~~~ 177 (723)
T 4gyw_A 165 DERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChh
Confidence 9999999887664
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.20 E-value=5.4e-11 Score=115.38 Aligned_cols=152 Identities=12% Similarity=-0.023 Sum_probs=95.4
Q ss_pred CCCchhhhHHHhhhccCCCCCChhHHHHHHHHhhcCccHHHHHHHHHHHHHh-------CCCCCchhhhHHHHHHhccCC
Q 043637 20 PTPSKTLTKTISGHLKSDEPVSYSLYAHLFQLCASSKAIVEARKLESNLVTF-------YPTPPVFLLNRAIECYGKCGN 92 (693)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~ 92 (693)
+.+..+......+......|.+..++..+...+...|++++|..+++++.+. ..+....++..+...|...|+
T Consensus 5 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 84 (311)
T 3nf1_A 5 HHHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK 84 (311)
T ss_dssp CCCCGGGGGGSCSSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC
T ss_pred cccccccccccccCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC
Confidence 3344444455555556666777788999999999999999999999998874 233345667778888888888
Q ss_pred hhhHHHhhccCCC-------C----CcccHHHHHHHHHhCCChhhHHHHHHHhhhC------CCCC-CHhhHHHHHHHhh
Q 043637 93 LDDARGLFDEMPE-------R----DGGSWNAMLGAYTQNGFPGRTLELFLDMNHS------GVSA-NQITYANVLRSSA 154 (693)
Q Consensus 93 ~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~~-~~~~~~~ll~~~~ 154 (693)
+++|...|++..+ + ...+|..+...+...|++++|+..|++..+. +-.| ....+..+...+.
T Consensus 85 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 164 (311)
T 3nf1_A 85 YKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ 164 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 8888888875431 1 1234555666666666666666666665442 1111 1223444444444
Q ss_pred ccCChHHHHHHHHHHHH
Q 043637 155 EELELGVSKQLHGLIVK 171 (693)
Q Consensus 155 ~~~~~~~a~~~~~~~~~ 171 (693)
..|++++|...++.+.+
T Consensus 165 ~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 165 NQGKYEEVEYYYQRALE 181 (311)
T ss_dssp TTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555444443
No 79
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.17 E-value=1.8e-09 Score=100.47 Aligned_cols=243 Identities=10% Similarity=-0.017 Sum_probs=160.3
Q ss_pred HHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHH
Q 043637 421 YRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIH 500 (693)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 500 (693)
..-.|.+..++..............-.-+.++|...|++... ....|....+..+...+. .+ +...+
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~--------~~~~~~~~a~~~la~~~~-~~----a~~~l 89 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ--------DPTSKLGKVLDLYVQFLD-TK----NIEEL 89 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC--------CSSSTTHHHHHHHHHHHT-TT----CCHHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC--------CCCCHHHHHHHHHHHHhc-cc----HHHHH
Confidence 344577777766444433322222333345677777776531 111455444444444332 22 56666
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCC-----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 043637 501 CFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSS-----LDVIICNSMILGFCHNERGREALEVFGLMKKEGIK 575 (693)
Q Consensus 501 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 575 (693)
+++...+ .++...+..+..++...|++++|++++.+... .+...+...+..+.+.|+.+.|.+.+++|.+ ..
T Consensus 90 ~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~ 166 (310)
T 3mv2_B 90 ENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AI 166 (310)
T ss_dssp HHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC
Confidence 6666554 33444455777888888999999999887642 3556788888999999999999999999988 67
Q ss_pred C-----ChHHHHHHHHH--HhccC--cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC----
Q 043637 576 P-----DHITFHGILLA--CIHEG--NVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPF---- 642 (693)
Q Consensus 576 p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 642 (693)
| +..+...|..+ ....| ++.+|..+|+++.++ .|+...-..+..++.+.|++++|...++.+..
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 7 35555666655 44344 899999999998642 45523333444489999999999999986532
Q ss_pred --------CCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchh
Q 043637 643 --------NPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFK 684 (693)
Q Consensus 643 --------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 684 (693)
+.++.++..++-.....|+ +|.+.++++.+.+|++|....
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 3345566566666666675 889999999999999886543
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.16 E-value=2.2e-10 Score=122.29 Aligned_cols=147 Identities=10% Similarity=0.009 Sum_probs=132.9
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 043637 541 LDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYEC 619 (693)
Q Consensus 541 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 619 (693)
.+...|+.+...+...|++++|++.|++..+ +.|+ ...|..+..+|.+.|++++|++.++++.+. .+-+...|..
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~n 82 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 3567899999999999999999999999999 6786 588999999999999999999999999852 2335788999
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhccc
Q 043637 620 MIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 620 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
+..+|.+.|++++|++.+++.. .+.+...+..++..+...|++++|+..++++++++|+++.++..|+.+|.
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH
Confidence 9999999999999999999885 46678899999999999999999999999999999999999999998874
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.13 E-value=1.9e-08 Score=100.30 Aligned_cols=221 Identities=8% Similarity=0.002 Sum_probs=165.2
Q ss_pred HHHHHHHcCChHHHHHHHHhhcCC----CC----hhhHHHHHHHHHhcCChHHHHHHHHHhhhCC--CC-----CHHHHH
Q 043637 417 LLDMYRKCGNLRSARIWFYQMSQR----RD----KVSWNAVLTGYARRGQSEEAMTSFSEMQWET--RP-----SKFTFE 481 (693)
Q Consensus 417 l~~~~~~~~~~~~a~~~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~p-----~~~~~~ 481 (693)
....+...|++++|...+.+.... ++ ..++..+...|...|++++|+..+++..... .+ ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 445567889999998888887653 22 3467788889999999999999998864322 11 245777
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHh----CCC-cchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--------CCHHHHHH
Q 043637 482 TLLAACANISSLEQGKQIHCFVIRN----CYE-INVVCRGALVEVYTKCCCLEYAIRVFKESSS--------LDVIICNS 548 (693)
Q Consensus 482 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~ 548 (693)
.+..++...|++++|...+++..+. +.. ....++..+..+|...|++++|...+++... ....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8888999999999999999988762 111 2245677888999999999999999987652 23457888
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCC---CCC-hHHHHHHHHHHhccCc---HHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGI---KPD-HITFHGILLACIHEGN---VKLALQFFDSMRCKYGIIPQLEHYECMI 621 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 621 (693)
+...+.+.|++++|...+++..+..- .|. ...+..+...+...++ +.+|+..+++.. ..+.....+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHHHH
Confidence 99999999999999999999887321 222 2445566677778888 777887777632 2222345677889
Q ss_pred HHHHhcCChHHHHHHHHhC
Q 043637 622 KLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 622 ~~~~~~g~~~~A~~~~~~~ 640 (693)
..|.+.|++++|...+++.
T Consensus 344 ~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999876
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.13 E-value=3.7e-09 Score=93.27 Aligned_cols=157 Identities=13% Similarity=0.133 Sum_probs=82.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhh
Q 043637 446 WNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKC 525 (693)
Q Consensus 446 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (693)
+..+...+...|++++|.+.++++....+.+...+..+...+...|++++|...++++.+.... +...+..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHh
Confidence 4445555666666666666666655444445555666666666666666666666666554321 233344444444444
Q ss_pred CCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHH
Q 043637 526 CCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFF 601 (693)
Q Consensus 526 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 601 (693)
|++++|...++++. +.+...+..+...+...|++++|.+.++++.+. .| +...+..+...+...|++++|...+
T Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444444332 233444455555555555555555555555552 23 2344555555555555555555555
Q ss_pred HHhH
Q 043637 602 DSMR 605 (693)
Q Consensus 602 ~~~~ 605 (693)
+++.
T Consensus 168 ~~~~ 171 (186)
T 3as5_A 168 KKAN 171 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.10 E-value=1.1e-09 Score=100.58 Aligned_cols=161 Identities=11% Similarity=-0.025 Sum_probs=97.9
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCC---C-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHH
Q 043637 511 NVVCRGALVEVYTKCCCLEYAIRVFKESS---S-LDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGIL 585 (693)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~ 585 (693)
++..+......+...|++++|...|++.. + ++...+..+..++...|++++|++.+++..+ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 34556666666777777777777776654 3 5666666667777777777777777777776 45543 5566666
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC---HHhHHHHHH
Q 043637 586 LACIHEGNVKLALQFFDSMRCKYGIIPQL-------EHYECMIKLYCRYGYMKELEDFVNRMP-FNPT---VPMLRKIFD 654 (693)
Q Consensus 586 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~ 654 (693)
.++...|++++|+..+++..+. .+.+. ..|..+...+.+.|++++|+..+++.. ..|+ ...+..++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 7777777777777777777642 22223 345566666666777777777776654 2332 345555555
Q ss_pred HHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 655 KCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 655 ~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
.+... +...++++..+.+.++
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~~~ 182 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASSNK 182 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTTCH
T ss_pred HHHHH-----HHHHHHHHHhcccCCH
Confidence 55433 3444555555555443
No 84
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.09 E-value=1.2e-10 Score=98.62 Aligned_cols=139 Identities=12% Similarity=-0.047 Sum_probs=106.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRY 627 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 627 (693)
|...+...|++++|++.+++... ..|+ ...+..+...|.+.|++++|++.++++.+ -.+-++..|..+..+|.+.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 33445566778888888887766 4554 35566777888899999999999988875 2334577888888899999
Q ss_pred CChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHH-HHHHHhhcCCCCCcchhhhhhccc
Q 043637 628 GYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEW-AARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 628 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
|++++|+..|++.. .+.++..+..++..+...|+.++|.. .++++++++|+++.++...+.++.
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 99999999888775 45567788889999999998877655 469999999999999888887764
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.07 E-value=9.3e-08 Score=95.17 Aligned_cols=266 Identities=10% Similarity=-0.040 Sum_probs=136.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh----hHHHHHHHHhcccchhhHHHHHHHHHHhCC-CCchhHHHHHHHHH
Q 043637 347 MLAGYTRSLLWKEALDFVFLMRKTTKDIDQV----TLGLILNVCAGLSEIKMGKEVHGFIHRNDY-SSNIFVSNALLDMY 421 (693)
Q Consensus 347 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~ 421 (693)
....+...|++++|...+++........+.. .+..+...+...|+++.|...++...+..- ..+...
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------- 91 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY-------- 91 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH--------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH--------
Confidence 3445566788888888888776643222221 222333344455555555555554432110 000000
Q ss_pred HHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhC----C-C--CC-HHHHHHHHHHhcccCCh
Q 043637 422 RKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWE----T-R--PS-KFTFETLLAACANISSL 493 (693)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~--p~-~~~~~~ll~~~~~~~~~ 493 (693)
...++..+...+...|++++|.+.+++.... + . |. ...+..+...+...|++
T Consensus 92 --------------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 151 (373)
T 1hz4_A 92 --------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL 151 (373)
T ss_dssp --------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred --------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCH
Confidence 0112333444455555555555555554221 1 1 21 22344455555666666
Q ss_pred HHHHHHHHHHHHhCCCc----chhHHHHHHHHHHhhCCHHHHHHHHhcCC----CCC-HHHHH-----HHHHHHHhCCCh
Q 043637 494 EQGKQIHCFVIRNCYEI----NVVCRGALVEVYTKCCCLEYAIRVFKESS----SLD-VIICN-----SMILGFCHNERG 559 (693)
Q Consensus 494 ~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~-~~~~~-----~l~~~~~~~g~~ 559 (693)
++|...+++........ ....+..+...+...|++++|...+++.. .++ ...+. ..+..+...|++
T Consensus 152 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 231 (373)
T 1hz4_A 152 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 231 (373)
T ss_dssp HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH
Confidence 66666666655522211 12344555566666666666666665432 111 11111 222335677777
Q ss_pred HHHHHHHHHHHHCCCCCC---hHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCCh-hHHHHHHHHHHhcCChHH
Q 043637 560 REALEVFGLMKKEGIKPD---HITFHGILLACIHEGNVKLALQFFDSMRCKY---GIIPQL-EHYECMIKLYCRYGYMKE 632 (693)
Q Consensus 560 ~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~p~~-~~~~~l~~~~~~~g~~~~ 632 (693)
++|...+++.......+. ...+..+...+...|++++|...++++.... +..++. ..+..+..++...|+.++
T Consensus 232 ~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 311 (373)
T 1hz4_A 232 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD 311 (373)
T ss_dssp HHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHH
Confidence 777777777665321111 1234556677777788888877777765321 111122 245556677777888888
Q ss_pred HHHHHHhC
Q 043637 633 LEDFVNRM 640 (693)
Q Consensus 633 A~~~~~~~ 640 (693)
|...+++.
T Consensus 312 A~~~l~~a 319 (373)
T 1hz4_A 312 AQRVLLDA 319 (373)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87777765
No 86
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.07 E-value=9.5e-08 Score=95.10 Aligned_cols=263 Identities=8% Similarity=-0.132 Sum_probs=160.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--C--Cc----ccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCH----hhH
Q 043637 313 WTSIVSGYAISGRIREARELFNEMPE--R--NV----ISWNAMLAGYTRSLLWKEALDFVFLMRKTTKD-IDQ----VTL 379 (693)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~~~~--~--~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~----~~~ 379 (693)
.......+...|++++|...+++... | +. ..++.+...+...|++++|...+++....... ++. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 34455667789999999999877543 2 21 14566677888899999999999987653211 111 112
Q ss_pred HHHHHHHhcccchhhHHHHHHHHHHh----CCC--CchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHH
Q 043637 380 GLILNVCAGLSEIKMGKEVHGFIHRN----DYS--SNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGY 453 (693)
Q Consensus 380 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~ 453 (693)
..+...+...|+++.|...++...+. +.+ |. ....+..+...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~-------------------------------~~~~~~~la~~~ 145 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM-------------------------------HEFLVRIRAQLL 145 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH-------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH-------------------------------HHHHHHHHHHHH
Confidence 33333444555555555555444321 110 10 112334455555
Q ss_pred HhcCChHHHHHHHHHhhhCC----CC-CHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcc--hhHHH----HHHHHH
Q 043637 454 ARRGQSEEAMTSFSEMQWET----RP-SKFTFETLLAACANISSLEQGKQIHCFVIRNCYEIN--VVCRG----ALVEVY 522 (693)
Q Consensus 454 ~~~~~~~~a~~~~~~~~~~~----~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~ 522 (693)
...|++++|...+++..... .+ ...++..+...+...|++++|...+++.......++ ..... ..+..+
T Consensus 146 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (373)
T 1hz4_A 146 WAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 225 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 66666666666666543221 11 234555666667777777777777777665321111 11111 233446
Q ss_pred HhhCCHHHHHHHHhcCCCCC-------HHHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCCh-HHHHHHHHHHhc
Q 043637 523 TKCCCLEYAIRVFKESSSLD-------VIICNSMILGFCHNERGREALEVFGLMKKE----GIKPDH-ITFHGILLACIH 590 (693)
Q Consensus 523 ~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~ 590 (693)
...|++++|...+++...++ ...+..+...+...|++++|...+++..+. |..++. ..+..+..++..
T Consensus 226 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 305 (373)
T 1hz4_A 226 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 305 (373)
T ss_dssp HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence 78889999988888776321 224667788899999999999999887652 222222 356666788899
Q ss_pred cCcHHHHHHHHHHhHH
Q 043637 591 EGNVKLALQFFDSMRC 606 (693)
Q Consensus 591 ~g~~~~A~~~~~~~~~ 606 (693)
.|+.++|...+++...
T Consensus 306 ~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 306 AGRKSDAQRVLLDALK 321 (373)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH
Confidence 9999999999998874
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=3.1e-09 Score=101.50 Aligned_cols=209 Identities=9% Similarity=-0.079 Sum_probs=105.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhC----CCC--CHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHH
Q 043637 444 VSWNAVLTGYARRGQSEEAMTSFSEMQWE----TRP--SKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGA 517 (693)
Q Consensus 444 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 517 (693)
..|......|...|++++|.+.|.+.... +.| ...+|..+..+|...|++++|...+++..+...
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~--------- 108 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFT--------- 108 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---------
Confidence 34555555666666666666666654221 111 123455555555555555555555554443110
Q ss_pred HHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHHHHCCCCCC-------hHHHHHHHHHHh
Q 043637 518 LVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHN-ERGREALEVFGLMKKEGIKPD-------HITFHGILLACI 589 (693)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~p~-------~~~~~~l~~~~~ 589 (693)
..|+... -..+++.+...|... |++++|+..+++..+ +.|+ ..++..+...+.
T Consensus 109 ------~~g~~~~-----------~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~~~~~~~~~~~~~~~~lg~~~~ 169 (292)
T 1qqe_A 109 ------HRGQFRR-----------GANFKFELGEILENDLHDYAKAIDCYELAGE--WYAQDQSVALSNKCFIKCADLKA 169 (292)
T ss_dssp ------HTTCHHH-----------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------HcCCHHH-----------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--HHHhCCChHHHHHHHHHHHHHHH
Confidence 0010000 022455566666664 666666666666655 2221 234556666667
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHH------hHHHHHHHHH
Q 043637 590 HEGNVKLALQFFDSMRCKYGIIPQL-----EHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVP------MLRKIFDKCR 657 (693)
Q Consensus 590 ~~g~~~~A~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~------~~~~l~~~~~ 657 (693)
..|++++|+..++++.+...-.+.. ..+..++.++...|++++|+..+++.. ..|+.. .+..++..+.
T Consensus 170 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~ 249 (292)
T 1qqe_A 170 LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN 249 (292)
T ss_dssp HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 7777777777777666421111111 134556666666777777777776654 122211 2333444443
Q ss_pred --hcCCccHHHHHHHHHhhcCCCCC
Q 043637 658 --KNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 658 --~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
..+++++|...++++.+++|+..
T Consensus 250 ~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 250 EGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp TTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred cCCHHHHHHHHHHhccCCccHHHHH
Confidence 23456666666666666666443
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.05 E-value=3.5e-09 Score=100.77 Aligned_cols=199 Identities=10% Similarity=0.002 Sum_probs=119.5
Q ss_pred HHHHHHHHHhcccCChHHHHHHHHHHHHh------CC-CcchhHHHHHHHHHHhhCCHHHHHHHHhcCC-----------
Q 043637 478 FTFETLLAACANISSLEQGKQIHCFVIRN------CY-EINVVCRGALVEVYTKCCCLEYAIRVFKESS----------- 539 (693)
Q Consensus 478 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----------- 539 (693)
.++..+...+...|++++|...++++.+. +- ......+..+..+|...|++++|...+++..
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444555555555555555555554442 11 1123445555556666666666666555433
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhc----
Q 043637 540 SLDVIICNSMILGFCHNERGREALEVFGLMKKE------GIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKY---- 608 (693)
Q Consensus 540 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---- 608 (693)
+.....+..+...+...|++++|...+++..+. +-.|+ ..++..+...+...|++++|...++++.+..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 112446778888888999999999999888773 11443 4678888899999999999999999987521
Q ss_pred --CCCC-ChhHHHHHHHHHHhcC------ChHHHHHHHHhCCC-CC-CHHhHHHHHHHHHhcCCccHHHHHHHHHhhcC
Q 043637 609 --GIIP-QLEHYECMIKLYCRYG------YMKELEDFVNRMPF-NP-TVPMLRKIFDKCRKNGYATLGEWAARRLNELN 676 (693)
Q Consensus 609 --~~~p-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 676 (693)
...+ ....+..+...+...+ .+.++...++.... .| ....+..++..|...|++++|...++++++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1122 2333444444443322 34445555555542 22 23467788999999999999999999998753
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.03 E-value=6.7e-09 Score=97.53 Aligned_cols=166 Identities=11% Similarity=-0.019 Sum_probs=106.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCC--CC-C---HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----hHHHHHH
Q 043637 515 RGALVEVYTKCCCLEYAIRVFKESS--SL-D---VIICNSMILGFCHNERGREALEVFGLMKKEGIKPD----HITFHGI 584 (693)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l 584 (693)
+-.+...+.+.|++++|...|+++. .| + ...+..+..++...|++++|+..|++..+ ..|+ ...+..+
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ--IYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--HCCCCchhHHHHHHH
Confidence 3334444555555555555555544 12 2 44566666777777777777777777776 3342 2345555
Q ss_pred HHHHhc--------cCcHHHHHHHHHHhHHhcCCCCChhH---------------HHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 585 LLACIH--------EGNVKLALQFFDSMRCKYGIIPQLEH---------------YECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 585 ~~~~~~--------~g~~~~A~~~~~~~~~~~~~~p~~~~---------------~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
..++.. .|++++|+..|+++.+...-.+.... +..+...|.+.|++++|+..|+++.
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 566666 77777777777777653222222111 1556788899999999999998874
Q ss_pred -CCCC----HHhHHHHHHHHHhc----------CCccHHHHHHHHHhhcCCCCCcc
Q 043637 642 -FNPT----VPMLRKIFDKCRKN----------GYATLGEWAARRLNELNPWAPFQ 682 (693)
Q Consensus 642 -~~~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~ 682 (693)
..|+ ...+..++.+|... |++++|...++++++..|+++.+
T Consensus 176 ~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 176 DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 2222 34666777777755 88899999999999999988643
No 90
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.01 E-value=1.8e-09 Score=87.96 Aligned_cols=115 Identities=8% Similarity=-0.088 Sum_probs=98.6
Q ss_pred CCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHH
Q 043637 574 IKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLR 650 (693)
Q Consensus 574 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 650 (693)
+.|+. ..+......|.+.|++++|++.|+++.+ -.+.++..|..+..+|.+.|++++|+..+++.. .+.+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 66754 6777888899999999999999999885 334567888889999999999999999998875 466778899
Q ss_pred HHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 651 KIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 651 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
.++.++...|++++|...++++++++|+++.+...|++++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999998888753
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.01 E-value=8e-09 Score=85.47 Aligned_cols=130 Identities=12% Similarity=0.087 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKL 623 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 623 (693)
.|..+...+...|++++|..+++++.+. .| +...+..+...+...|++++|...++++... .+.+...+..++..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHH
Confidence 4667778888888899999999888874 34 4567777888888889999999999988752 34456677888888
Q ss_pred HHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCC
Q 043637 624 YCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 624 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 678 (693)
+.+.|++++|...++++. .+.+...+..++..+...|++++|...++++++.+|+
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999999988774 3456677888888899999999999999999998885
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.98 E-value=5.1e-09 Score=94.23 Aligned_cols=130 Identities=12% Similarity=0.025 Sum_probs=99.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 043637 546 CNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLY 624 (693)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 624 (693)
...+..++.+.|++++|+..|++..+ +.|+ ...+..+..++...|++++|+..++++.+ -.+.+...+..+...|
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHH
Confidence 34488889999999999999999999 5674 57888888999999999999999999985 2344577888888888
Q ss_pred HhcCC--hHHHHHHHHhCCCCCCHH--hHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 625 CRYGY--MKELEDFVNRMPFNPTVP--MLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 625 ~~~g~--~~~A~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
...|+ .+.+...+++.. .+++. .+.....++...|++++|+..++++++++|+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 76654 445667777665 33333 334456667778999999999999999999643
No 93
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.95 E-value=8.2e-09 Score=109.18 Aligned_cols=158 Identities=6% Similarity=-0.132 Sum_probs=102.0
Q ss_pred CCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHH
Q 043637 526 CCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFF 601 (693)
Q Consensus 526 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 601 (693)
|++++|...+++.. +.+...|..+...+...|++++|.+.+++..+ ..|+ ...+..+..++...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45566666666554 33456677777777777777777777777777 4554 466777777777778888888877
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhc---CCccHHHHHHHHHhhcC
Q 043637 602 DSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKN---GYATLGEWAARRLNELN 676 (693)
Q Consensus 602 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 676 (693)
++..+. .+.+...+..+..+|.+.|++++|++.+++.. .+.+...+..+...+... |+.++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 777642 23346667777777777888888877777664 344566677777777777 77888888888888888
Q ss_pred CCCCcchhhhh
Q 043637 677 PWAPFQFKITT 687 (693)
Q Consensus 677 p~~~~~~~~l~ 687 (693)
|++...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 77766665554
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.93 E-value=9e-08 Score=91.31 Aligned_cols=197 Identities=12% Similarity=0.035 Sum_probs=131.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHhhcCC----CC----hhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHH
Q 043637 411 IFVSNALLDMYRKCGNLRSARIWFYQMSQR----RD----KVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFET 482 (693)
Q Consensus 411 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ 482 (693)
...|......|...|++++|...+.+.+.- .+ ..+|+.+...|.+.|++++|+..+++.....
T Consensus 37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--------- 107 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF--------- 107 (292)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------
Confidence 346777888899999999999888877652 12 4578899999999999999999998864321
Q ss_pred HHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhh-CCHHHHHHHHhcCCC-----CC----HHHHHHHHHH
Q 043637 483 LLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKC-CCLEYAIRVFKESSS-----LD----VIICNSMILG 552 (693)
Q Consensus 483 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~ 552 (693)
...|+...+ ..++..+..+|... |++++|+..+++... .+ ..+++.+...
T Consensus 108 -----~~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~ 167 (292)
T 1qqe_A 108 -----THRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADL 167 (292)
T ss_dssp -----HHTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----HHcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 111222111 11233344444443 555555555544330 01 2457778888
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCh--------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh------HHH
Q 043637 553 FCHNERGREALEVFGLMKKEGIKPDH--------ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLE------HYE 618 (693)
Q Consensus 553 ~~~~g~~~~A~~~~~~m~~~g~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~------~~~ 618 (693)
+...|++++|+..|++..+. .|+. ..|..+..++...|++++|...+++..+ +.|+.. .+.
T Consensus 168 ~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~ 242 (292)
T 1qqe_A 168 KALDGQYIEASDIYSKLIKS--SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLK 242 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHT--TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHH--HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHH
Confidence 99999999999999999883 4432 1466777888899999999999998863 344321 244
Q ss_pred HHHHHHH--hcCChHHHHHHHHhCC
Q 043637 619 CMIKLYC--RYGYMKELEDFVNRMP 641 (693)
Q Consensus 619 ~l~~~~~--~~g~~~~A~~~~~~~~ 641 (693)
.++..|. ..+++++|+..++++.
T Consensus 243 ~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 243 SLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCC
Confidence 4555554 4678999999998875
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.93 E-value=1.1e-07 Score=88.46 Aligned_cols=184 Identities=15% Similarity=0.122 Sum_probs=118.4
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHhhCCHHHHHHHHhcCC-
Q 043637 462 AMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCY-EINVVCRGALVEVYTKCCCLEYAIRVFKESS- 539 (693)
Q Consensus 462 a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 539 (693)
|+..|++....+.++..++..+..++...|++++|.+++.+.+..+. .-+...+..++.++.+.|+.+.|.+.++++.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55566665554444455555666666667777777777766655443 2255666667777777777777777777665
Q ss_pred -CC-----CHHHHHHHHHH--HHh--CCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 043637 540 -SL-----DVIICNSMILG--FCH--NERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYG 609 (693)
Q Consensus 540 -~~-----~~~~~~~l~~~--~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 609 (693)
.| +-.+...++.+ ... .++.++|..+|+++.+ -.|+..+-..++.++.+.|++++|.+.++.+.+...
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ--TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 44 13344444444 222 3489999999999877 356644444455588999999999999987764210
Q ss_pred --------CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHhH
Q 043637 610 --------IIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVPML 649 (693)
Q Consensus 610 --------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~ 649 (693)
-+.++.++..+|......|+ +|.+++.++. ..|+.|..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 13456677666666666776 7888888875 45665543
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.91 E-value=1.9e-09 Score=115.84 Aligned_cols=196 Identities=11% Similarity=-0.048 Sum_probs=157.9
Q ss_pred cccCChHHHHHHHHHHH--------HhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhC
Q 043637 488 ANISSLEQGKQIHCFVI--------RNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHN 556 (693)
Q Consensus 488 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 556 (693)
...|++++|.+.+++.. +.. ..+...+..+..+|...|++++|...+++.. +.+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 78899999999999998 322 2356778888999999999999999999877 66788999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 043637 557 ERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELED 635 (693)
Q Consensus 557 g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 635 (693)
|++++|++.|++..+ +.|+ ...+..+..++.+.|++++ ++.++++.+ -.+.+...+..+..+|.+.|++++|+.
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999 6775 5788889999999999999 999999985 234457788999999999999999999
Q ss_pred HHHhCC-CCCC-HHhHHHHHHHHHhcCC-----ccHHHHHHHHHhhcCCCCCcchhhhhhc
Q 043637 636 FVNRMP-FNPT-VPMLRKIFDKCRKNGY-----ATLGEWAARRLNELNPWAPFQFKITTNR 689 (693)
Q Consensus 636 ~~~~~~-~~~~-~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 689 (693)
.+++.. ..|+ ...+..+..++...|+ .+...++.+.+.++.|+++.....-+.+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~~~l 616 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIRALV 616 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHHHHHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 999986 3444 5577777777766665 4667777777777888777765544433
No 97
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.91 E-value=3.8e-07 Score=85.95 Aligned_cols=229 Identities=7% Similarity=-0.033 Sum_probs=174.8
Q ss_pred CChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccC--ChHHHHHHHHHHHHhCCCcchhHHHHHHHHH----Hhh---CC
Q 043637 457 GQSEEAMTSFSEMQWETRPSKFTFETLLAACANIS--SLEQGKQIHCFVIRNCYEINVVCRGALVEVY----TKC---CC 527 (693)
Q Consensus 457 ~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 527 (693)
...++|++.++.+....+-....++.--.++...+ +++++...++.+...+++ +...++.-..++ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 33467888888877776666677777777777777 888888888888886655 444454444444 444 67
Q ss_pred HHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChH--HHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCc------HH
Q 043637 528 LEYAIRVFKESS---SLDVIICNSMILGFCHNERGR--EALEVFGLMKKEGIKP-DHITFHGILLACIHEGN------VK 595 (693)
Q Consensus 528 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~------~~ 595 (693)
+++++.+++++. +.+..+|+.-...+.+.|+++ ++++.++++.+ ..| |...|+.-...+...|. ++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 888888888876 667778888888888888888 99999999999 456 56778777777777776 89
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH-HHHHHHhCCC-----CCCHHhHHHHHHHHHhcCCccHHHHHH
Q 043637 596 LALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKE-LEDFVNRMPF-----NPTVPMLRKIFDKCRKNGYATLGEWAA 669 (693)
Q Consensus 596 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~ 669 (693)
++++.+++++. -.+-|...|+.+...+.+.|+..+ +..+.++... ..++..+..++..+.+.|+.++|.+++
T Consensus 204 eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 204 EELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 99999999985 345567778888888888888555 5567776642 446678888999999999999999999
Q ss_pred HHHhh-cCCCCCcchhhhhhcc
Q 043637 670 RRLNE-LNPWAPFQFKITTNRF 690 (693)
Q Consensus 670 ~~~~~-~~p~~~~~~~~l~~~y 690 (693)
+.+.+ .+|-....+...++..
T Consensus 282 ~~l~~~~Dpir~~yW~~~~~~l 303 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQISKL 303 (306)
T ss_dssp HHHHHTTCGGGHHHHHHHHHTC
T ss_pred HHHHhccChHHHHHHHHHHhhc
Confidence 99997 8998877777665543
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.90 E-value=5.5e-08 Score=91.23 Aligned_cols=58 Identities=14% Similarity=0.121 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHhcc----------CcHHHHHHHHHHhHH
Q 043637 547 NSMILGFCHNERGREALEVFGLMKKEGIKPD----HITFHGILLACIHE----------GNVKLALQFFDSMRC 606 (693)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~ 606 (693)
..+...+...|++++|+..|+++.+ ..|+ ...+..+..+|... |++++|...++++.+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFD--AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 3445556666666666666666655 2343 13444444555544 566666666666654
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.90 E-value=2e-08 Score=108.00 Aligned_cols=181 Identities=9% Similarity=-0.075 Sum_probs=152.0
Q ss_pred HhcCChHHHHHHHHHhh--------hCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhh
Q 043637 454 ARRGQSEEAMTSFSEMQ--------WETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKC 525 (693)
Q Consensus 454 ~~~~~~~~a~~~~~~~~--------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (693)
...|++++|++.+++.. ...+.+...+..+..++...|++++|...++++.+.... +...+..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHc
Confidence 77899999999999987 444666778889999999999999999999999986544 677888899999999
Q ss_pred CCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHH
Q 043637 526 CCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFF 601 (693)
Q Consensus 526 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 601 (693)
|++++|...|++.. +.+...|..+..++.+.|++++ ++.|++..+ +.|+ ...|..+..++.+.|++++|++.+
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999876 5577889999999999999999 999999999 5675 578889999999999999999999
Q ss_pred HHhHHhcCCCCC-hhHHHHHHHHHHhcCC--------hHHHHHHHHhCC
Q 043637 602 DSMRCKYGIIPQ-LEHYECMIKLYCRYGY--------MKELEDFVNRMP 641 (693)
Q Consensus 602 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~ 641 (693)
+++. ...|+ ...+..+..++...|+ +++|.+.+..+.
T Consensus 558 ~~al---~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 558 DEVP---PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HTSC---TTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred Hhhc---ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 9986 34555 5667778888876554 777777777775
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.88 E-value=8.1e-08 Score=87.62 Aligned_cols=64 Identities=14% Similarity=0.061 Sum_probs=52.5
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-CCCC-H---HhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcc
Q 043637 619 CMIKLYCRYGYMKELEDFVNRMP-FNPT-V---PMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQ 682 (693)
Q Consensus 619 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 682 (693)
.+...|.+.|++++|+..|+++. ..|+ + ..+..++.++.+.|+.++|...++.+....|++...
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 46678899999999999999885 2333 2 367788899999999999999999999999976543
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.83 E-value=9.7e-08 Score=78.76 Aligned_cols=127 Identities=12% Similarity=0.122 Sum_probs=77.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhh
Q 043637 446 WNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKC 525 (693)
Q Consensus 446 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 525 (693)
|..+...+...|++++|..+++++....+.+...+..+...+...|+++.|...++++.+.+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------ 65 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------------------ 65 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC------------------
Confidence 44445555555555555555555544333344444444444444555555555544444322
Q ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHh
Q 043637 526 CCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSM 604 (693)
Q Consensus 526 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 604 (693)
+.+...+..+...+...|++++|.+.++++.+. .| +...+..+...+...|++++|...++++
T Consensus 66 --------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 66 --------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp --------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred --------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 234455666777777778888888888877773 34 4566777777888888888888888877
Q ss_pred HH
Q 043637 605 RC 606 (693)
Q Consensus 605 ~~ 606 (693)
.+
T Consensus 130 ~~ 131 (136)
T 2fo7_A 130 LE 131 (136)
T ss_dssp HH
T ss_pred Hc
Confidence 64
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.83 E-value=6.4e-08 Score=86.96 Aligned_cols=134 Identities=9% Similarity=-0.066 Sum_probs=91.3
Q ss_pred HHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhcc
Q 043637 516 GALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHE 591 (693)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~ 591 (693)
..+..+|.+.|++++|...+++.. +.+...|..+...+...|++++|+..|++..+ +.|+ ...+..+..+|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 346777778888888888887765 55677888888888889999999999999888 5675 57777777777666
Q ss_pred Cc--HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHhHHHHHH
Q 043637 592 GN--VKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVPMLRKIFD 654 (693)
Q Consensus 592 g~--~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~ 654 (693)
|+ .+.+...++... ...|....+.....++...|++++|+..|++.. ..|+......+..
T Consensus 136 ~~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 54 334555554443 222222234445667777889999999988775 5677665554443
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.82 E-value=5.8e-08 Score=84.62 Aligned_cols=156 Identities=12% Similarity=-0.076 Sum_probs=110.6
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHH-Hhc
Q 043637 515 RGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLA-CIH 590 (693)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~ 590 (693)
...+...+...|++++|...+++.. +.+...+..+...+...|++++|+..+++..+ ..|+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChHHHHHHHHHHHHh
Confidence 4455667778888888888888877 55667888888888888999999988888776 44543322222211 122
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC---HHhHHHHHHHHHhcCCccHHH
Q 043637 591 EGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-FNPT---VPMLRKIFDKCRKNGYATLGE 666 (693)
Q Consensus 591 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~~g~~~~A~ 666 (693)
.+....|+..+++..+ -.+.++..+..+..++.+.|++++|+..|+++. ..|+ ...+..++..+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2223346778888774 223357778888888999999999998888764 2332 457778888888889999999
Q ss_pred HHHHHHhh
Q 043637 667 WAARRLNE 674 (693)
Q Consensus 667 ~~~~~~~~ 674 (693)
..+++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887754
No 104
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.82 E-value=5e-08 Score=92.70 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
.++..+...|...|++++|...++++.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456666677777777777777777665
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.78 E-value=8.9e-08 Score=90.93 Aligned_cols=153 Identities=8% Similarity=-0.094 Sum_probs=70.0
Q ss_pred HHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHH-HHHhccC
Q 043637 517 ALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGIL-LACIHEG 592 (693)
Q Consensus 517 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~-~~~~~~g 592 (693)
.+...+...|++++|...+++.. +.+...+..+...+...|++++|...++++.. ..|+........ ..+...+
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~~~~l~~~~ 199 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVAQIELLXQA 199 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHHHHHHHhhc
Confidence 33444444444444444444433 23344444455555555555555555555444 234332211111 2233444
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC--HHhHHHHHHHHHhcCCccHHHHH
Q 043637 593 NVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPT--VPMLRKIFDKCRKNGYATLGEWA 668 (693)
Q Consensus 593 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 668 (693)
+.++|...+++..+ ..+.+...+..+...|...|++++|+..++++. .+.+ ...+..++..+...|+.++|...
T Consensus 200 ~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~ 277 (287)
T 3qou_A 200 ADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASX 277 (287)
T ss_dssp TSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHH
Confidence 44445555555443 122334444555555555555555555555443 1111 33455555555555555555555
Q ss_pred HHHHh
Q 043637 669 ARRLN 673 (693)
Q Consensus 669 ~~~~~ 673 (693)
+++.+
T Consensus 278 ~r~al 282 (287)
T 3qou_A 278 YRRQL 282 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.78 E-value=6.4e-08 Score=93.13 Aligned_cols=155 Identities=8% Similarity=-0.035 Sum_probs=89.5
Q ss_pred HHHhcccCChHHHHHHHHHHHHhCCC-----cchhHHHHHHHHHHhhCCHHHHHHHHhcCC-------CCC--HHHHHHH
Q 043637 484 LAACANISSLEQGKQIHCFVIRNCYE-----INVVCRGALVEVYTKCCCLEYAIRVFKESS-------SLD--VIICNSM 549 (693)
Q Consensus 484 l~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~--~~~~~~l 549 (693)
...|...|++++|...+.+..+.... .....+..+..+|...|++++|+..+++.. .+. ..+++.+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45566677777777777766652111 113455666666777777766666665543 111 2355666
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCC-------hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHH
Q 043637 550 ILGFCHNERGREALEVFGLMKKEGIKPD-------HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ----LEHYE 618 (693)
Q Consensus 550 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~ 618 (693)
...|.. |++++|++.+++..+ +.|+ ..++..+...+...|++++|+..++++.+...-.++ ...+.
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 199 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAA--VFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCI 199 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHH--HHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 666666 777777777776655 2221 245566666777777777777777766542111111 12344
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC
Q 043637 619 CMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 619 ~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
.++.++...|++++|+..|++..
T Consensus 200 ~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 200 AQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHh
Confidence 55555666677777777776654
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.78 E-value=1.6e-08 Score=85.26 Aligned_cols=138 Identities=12% Similarity=0.009 Sum_probs=91.7
Q ss_pred HHHHHhhCCHHHHHHHHhcCCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcH
Q 043637 519 VEVYTKCCCLEYAIRVFKESSSL---DVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNV 594 (693)
Q Consensus 519 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~ 594 (693)
..++...|++++|+..++...+. +...+..+...|...|++++|++.|++..+ +.|+ ..+|..+..++...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCch
Confidence 34455566677777777766532 233555677788888888888888888887 5664 56777777888888888
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH-HHhCC--CCCCHHhHHHHHHHHHhcC
Q 043637 595 KLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDF-VNRMP--FNPTVPMLRKIFDKCRKNG 660 (693)
Q Consensus 595 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~--~~~~~~~~~~l~~~~~~~g 660 (693)
++|+..|+++.+. .+-++..+..+...|.+.|+.++|... +++.. .+.++..+......+...|
T Consensus 82 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 8888888888742 233466777788888888887765544 45543 3445555655555555555
No 108
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=1.5e-07 Score=85.01 Aligned_cols=124 Identities=10% Similarity=-0.007 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccC
Q 043637 514 CRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEG 592 (693)
Q Consensus 514 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g 592 (693)
.+..+...+...|++++|...+++...++...|..+...+...|++++|++.+++..+ +.| +...+..+..++...|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcc
Confidence 3456677888899999999999999888888999999999999999999999999888 455 4577888889999999
Q ss_pred cHHHHHHHHHHhHHhcCCCCCh----------------hHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 593 NVKLALQFFDSMRCKYGIIPQL----------------EHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 593 ~~~~A~~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
++++|++.++++.+. .+.+. ..+..+..+|.+.|++++|...+++..
T Consensus 86 ~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp CHHHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999998852 22222 667788888888888888888888764
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.74 E-value=4.3e-07 Score=86.20 Aligned_cols=163 Identities=10% Similarity=-0.038 Sum_probs=125.0
Q ss_pred CCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC--CCCHHHHH-HHHH
Q 043637 475 PSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS--SLDVIICN-SMIL 551 (693)
Q Consensus 475 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~-~l~~ 551 (693)
.+...+..+...+...|++++|...++++.+..+. +...+..+..++.+.|++++|...++++. .|+..... ....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 34455566667777788888888888888776554 56677788888999999999999999887 35544332 2333
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCh
Q 043637 552 GFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYM 630 (693)
Q Consensus 552 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 630 (693)
.+...++.+.|...+++..+ ..|+ ...+..+...+...|++++|...++++.+...-..+...+..++..|...|+.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 46677888889999999988 5675 57888888999999999999999999986422222367789999999999999
Q ss_pred HHHHHHHHhC
Q 043637 631 KELEDFVNRM 640 (693)
Q Consensus 631 ~~A~~~~~~~ 640 (693)
++|...+++.
T Consensus 272 ~~a~~~~r~a 281 (287)
T 3qou_A 272 DALASXYRRQ 281 (287)
T ss_dssp CHHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 9998887653
No 110
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.74 E-value=1.9e-05 Score=80.83 Aligned_cols=203 Identities=10% Similarity=-0.091 Sum_probs=136.7
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHH-HHHHhcC
Q 043637 460 EEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYA-IRVFKES 538 (693)
Q Consensus 460 ~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~ 538 (693)
+.+..+|+++....+.....|...+.-+...|+.+.|..++++.... + .+...+. .|....+.++. ..+.+..
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~----~y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSL----YYGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHH----HHHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHH----HHHhhcchhHHHHHHHHHH
Confidence 45667888877665555677777777778889999999999999988 2 2332222 22221111111 1112111
Q ss_pred C------------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc-cCcHHHHHHHHHHhH
Q 043637 539 S------------SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIH-EGNVKLALQFFDSMR 605 (693)
Q Consensus 539 ~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 605 (693)
. .....+|...+..+.+.++.+.|..+|++. .. -.++...|......-.. .++.+.|..+|+...
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 0 112246777777777888899999999999 31 11233444432322222 336999999999998
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 043637 606 CKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNE 674 (693)
Q Consensus 606 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 674 (693)
+.++ -++..+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..++++..+
T Consensus 348 ~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 348 LKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7533 334556667888889999999999999984 3678888888888889999999999998886
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.73 E-value=2e-07 Score=83.95 Aligned_cols=174 Identities=5% Similarity=-0.176 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHhCC----ChHHHHHHHHH
Q 043637 494 EQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS-SLDVIICNSMILGFCHNE----RGREALEVFGL 568 (693)
Q Consensus 494 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~ 568 (693)
.+|.+.|++..+.| ++..+..+...|...+++++|...|++.. ..++..+..+...|.. + ++++|++.|++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 35677888888764 66778888899999999999999999877 5677788888888887 6 89999999999
Q ss_pred HHHCCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHh----cCChHHHHHHH
Q 043637 569 MKKEGIKPDHITFHGILLACIH----EGNVKLALQFFDSMRCKYGIIPQ---LEHYECMIKLYCR----YGYMKELEDFV 637 (693)
Q Consensus 569 m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~ 637 (693)
..+.| +...+..|...|.. .+++++|.+.+++..+ ..|+ +..+..|...|.. .++.++|+.+|
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 98855 56778888888887 8899999999999874 2332 6778889999988 88999999999
Q ss_pred HhCCCC-CCHHhHHHHHHHHHhc-C-----CccHHHHHHHHHhhcCC
Q 043637 638 NRMPFN-PTVPMLRKIFDKCRKN-G-----YATLGEWAARRLNELNP 677 (693)
Q Consensus 638 ~~~~~~-~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~p 677 (693)
++.... +++..+..+...|... | +.++|...++++.+..+
T Consensus 153 ~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 988543 6667777788887663 4 89999999999998865
No 112
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.72 E-value=7.3e-08 Score=80.74 Aligned_cols=105 Identities=8% Similarity=-0.096 Sum_probs=81.7
Q ss_pred CCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHH
Q 043637 574 IKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLR 650 (693)
Q Consensus 574 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 650 (693)
+.|+ ...+..+...+.+.|++++|+..|+++.. -.+.++..|..+..+|.+.|++++|+..|++.. .+.++..+.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 4554 35677777888888888888888888875 234457778888888888888888888888774 455667788
Q ss_pred HHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 651 KIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 651 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
.++.++...|++++|...+++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888888888888654
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.72 E-value=2.1e-07 Score=80.98 Aligned_cols=154 Identities=9% Similarity=-0.031 Sum_probs=99.3
Q ss_pred HHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC--CCCHHHHHHHHHH-HHhCCChH
Q 043637 484 LAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS--SLDVIICNSMILG-FCHNERGR 560 (693)
Q Consensus 484 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~-~~~~g~~~ 560 (693)
...+...|++++|...+++..+..+. +...+..+..++...|++++|...+++.. .|+...+..+... +...++..
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~ 91 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAES 91 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccc
Confidence 33444555555555555554443222 44556666667777777777777777766 2343333222211 12223334
Q ss_pred HHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 043637 561 EALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNR 639 (693)
Q Consensus 561 ~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 639 (693)
.|+..+++..+ ..|+ ...+..+..++...|++++|...++++.+...-..+...+..++.+|...|+.++|...+++
T Consensus 92 ~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 92 PELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred hHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 57888888888 5675 57788888999999999999999999874211112355788889999999999999988875
Q ss_pred C
Q 043637 640 M 640 (693)
Q Consensus 640 ~ 640 (693)
.
T Consensus 170 a 170 (176)
T 2r5s_A 170 Q 170 (176)
T ss_dssp H
T ss_pred H
Confidence 3
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.71 E-value=6.2e-07 Score=80.66 Aligned_cols=179 Identities=5% Similarity=-0.118 Sum_probs=142.0
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhC----CHHHHHHHH
Q 043637 460 EEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCC----CLEYAIRVF 535 (693)
Q Consensus 460 ~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~ 535 (693)
.+|++.|++....+ +...+..+...+...+++++|...|++..+.| ++..+..|...|.. + ++++|...|
T Consensus 3 ~eA~~~~~~aa~~g--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG--DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp -CTTHHHHHHHHTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred chHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 35777888877654 55677778888888999999999999998876 45667778888887 6 899999999
Q ss_pred hcCC-CCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHhc----cCcHHHHHHHHHH
Q 043637 536 KESS-SLDVIICNSMILGFCH----NERGREALEVFGLMKKEGIKPD---HITFHGILLACIH----EGNVKLALQFFDS 603 (693)
Q Consensus 536 ~~~~-~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 603 (693)
++.. ..++..+..|...|.. .+++++|++.|++..+.| |+ ...+..|...|.. .+++++|...+++
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9877 6677788888888887 889999999999999854 42 6778888888888 8899999999999
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhc-C-----ChHHHHHHHHhCCCCCCHHhH
Q 043637 604 MRCKYGIIPQLEHYECMIKLYCRY-G-----YMKELEDFVNRMPFNPTVPML 649 (693)
Q Consensus 604 ~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~~~~~ 649 (693)
..+. ..++..+..|...|.+. | +.++|+.++++....++....
T Consensus 155 A~~~---~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~ 203 (212)
T 3rjv_A 155 SSSL---SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGC 203 (212)
T ss_dssp HHHT---SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHc---CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 9852 34556777888888753 3 899999999887644444443
No 115
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.71 E-value=3.1e-08 Score=83.27 Aligned_cols=102 Identities=9% Similarity=-0.132 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHH
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKC 656 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 656 (693)
..+..+...+...|++++|+..|+++.. ..+.+...|..+..+|.+.|++++|+..+++.. .+.++..+..++.++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4444555566666666666666666553 223345555556666666666666666666553 234445555566666
Q ss_pred HhcCCccHHHHHHHHHhhcCCCCCcc
Q 043637 657 RKNGYATLGEWAARRLNELNPWAPFQ 682 (693)
Q Consensus 657 ~~~g~~~~A~~~~~~~~~~~p~~~~~ 682 (693)
...|++++|...++++++++|++|..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 66666666666666666666655543
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.68 E-value=5.1e-07 Score=81.50 Aligned_cols=120 Identities=10% Similarity=-0.062 Sum_probs=76.5
Q ss_pred HHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhC
Q 043637 480 FETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHN 556 (693)
Q Consensus 480 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 556 (693)
+..+...+...|++++|...+++.. .|+...+..+..+|...|++++|...+++.. +.+...|..+..++...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 3445555666677777776666552 4455666666667777777777777766554 44555666666777777
Q ss_pred CChHHHHHHHHHHHHCCCCCC-h----------------HHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 557 ERGREALEVFGLMKKEGIKPD-H----------------ITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 557 g~~~~A~~~~~~m~~~g~~p~-~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
|++++|++.|++..+. .|+ . ..+..+..++...|++++|...++++.
T Consensus 85 ~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp TCHHHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 7777777777776663 332 2 455666666677777777777777665
No 117
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.67 E-value=3e-07 Score=84.46 Aligned_cols=137 Identities=8% Similarity=-0.092 Sum_probs=85.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHH
Q 043637 546 CNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ--LEHYECMIKL 623 (693)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~ 623 (693)
+-.+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.... .. .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHH
Confidence 344556666777777777777776663 35444555555677777777777777765432 11 111 2345666777
Q ss_pred HHhcCChHHHHHHHHhCCCC---C--CHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhh
Q 043637 624 YCRYGYMKELEDFVNRMPFN---P--TVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITT 687 (693)
Q Consensus 624 ~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 687 (693)
+.+.|++++|+..|++.... | ....+.....++.+.|+.++|...++++.+.+|+ +.....|.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 77777777777777766422 2 1224555666777777777777777777777776 55555444
No 118
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.65 E-value=6.4e-07 Score=81.58 Aligned_cols=183 Identities=12% Similarity=-0.024 Sum_probs=118.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCC--CC-CHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcch--hHHHHH
Q 043637 444 VSWNAVLTGYARRGQSEEAMTSFSEMQWET--RP-SKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINV--VCRGAL 518 (693)
Q Consensus 444 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 518 (693)
..+..+...+.+.|++++|+..|+++.... .| ....+..+..++...|++++|...++++.+..+.... ..+-.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 445566777888999999999999987654 22 2457777888889999999999999998886544221 133333
Q ss_pred HHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHH----------------
Q 043637 519 VEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITF---------------- 581 (693)
Q Consensus 519 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~---------------- 581 (693)
..++...+.- ....|..+...+...|+.++|...|+++.+ ..|+. ..+
T Consensus 85 g~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 85 GLTNMALDDS-------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp HHHHHHHHC---------------------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhh-------------hhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHHHHHHHHHHHH
Confidence 4444332210 001122233334456677777777777777 45543 222
Q ss_pred -HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 582 -HGILLACIHEGNVKLALQFFDSMRCKYGIIPQ-LEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 582 -~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
..+...+.+.|++++|+..++++.+...-.|. ...+..+..+|.+.|+.++|+..++.+.
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 24456788999999999999999864222221 2567888999999999999999998764
No 119
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.63 E-value=8.7e-08 Score=83.66 Aligned_cols=129 Identities=7% Similarity=0.022 Sum_probs=93.0
Q ss_pred HhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH-HHhcCCh-
Q 043637 554 CHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKL-YCRYGYM- 630 (693)
Q Consensus 554 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~- 630 (693)
...|++++|...+++..+ ..| +...+..+...|...|++++|...++++.+. .+.+...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 455777888888888777 345 4577777778888888888888888888752 23356667777777 6778887
Q ss_pred -HHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhh
Q 043637 631 -KELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKIT 686 (693)
Q Consensus 631 -~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 686 (693)
++|+..++++. .+.+...+..++..+...|++++|...++++++++|+++.....+
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 88888888774 345567777788888888888888888888888888776554433
No 120
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.63 E-value=2.2e-07 Score=75.30 Aligned_cols=110 Identities=12% Similarity=0.029 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHH
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKC 656 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 656 (693)
..+..+...+...|++++|.+.++++... .+.+...+..++..+.+.|++++|+..++++. .+.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45555556666666666666666666542 23345556666666666677777766666653 344555666777777
Q ss_pred HhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 657 RKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 657 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
...|++++|...++++++.+|+++..+..++.++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 7778888888888888888887777777777665
No 121
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.63 E-value=0.00011 Score=75.15 Aligned_cols=123 Identities=12% Similarity=-0.090 Sum_probs=57.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcc-cCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 043637 445 SWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACAN-ISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYT 523 (693)
Q Consensus 445 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 523 (693)
.|...+....+.+..+.|..+|++. .....+...|......-.. .++.+.|..+|+...+.... ++..+...++...
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~ 365 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 3445555555556666666666666 2112233333221111111 22466666666666654322 2233334444445
Q ss_pred hhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 043637 524 KCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMK 570 (693)
Q Consensus 524 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 570 (693)
+.|+.+.|..+|+++. .....|...+.--...|+.+.+.++++++.
T Consensus 366 ~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 366 RIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555552 234444444444444455555555444443
No 122
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.59 E-value=2.2e-07 Score=76.41 Aligned_cols=109 Identities=6% Similarity=-0.093 Sum_probs=54.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHH
Q 043637 580 TFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCR 657 (693)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 657 (693)
.+..+...+...|++++|...++++.+ ..+.+...+..+..+|...|++++|+..+++.. .+.+...+..++..+.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 344444444444444444444444432 112233444444444444444444444444432 2333445555556666
Q ss_pred hcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 658 KNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 658 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
..|++++|...++++++++|+++..+..++.+|
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 128 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 128 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 666666666666666666666666666655554
No 123
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.59 E-value=1.2e-07 Score=79.14 Aligned_cols=101 Identities=8% Similarity=-0.112 Sum_probs=52.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHH
Q 043637 580 TFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCR 657 (693)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 657 (693)
.+..+...+.+.|++++|...|+++.. ..+.+...|..+..+|.+.|++++|+..+++.. .+.++..+..++.++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 344444555555555555555555543 122234445555555555555555555555443 2334444555555555
Q ss_pred hcCCccHHHHHHHHHhhcCCCCCcc
Q 043637 658 KNGYATLGEWAARRLNELNPWAPFQ 682 (693)
Q Consensus 658 ~~g~~~~A~~~~~~~~~~~p~~~~~ 682 (693)
..|++++|...++++++++|+++..
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcch
Confidence 5566666666666666665555544
No 124
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.58 E-value=4.2e-07 Score=87.32 Aligned_cols=223 Identities=10% Similarity=0.014 Sum_probs=153.5
Q ss_pred ccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 043637 389 LSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSE 468 (693)
Q Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 468 (693)
.|++++|.+++++..+..- .. + +...++++.|...+ ......|...|++++|.+.|.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~------~---~~~~~~~~~A~~~~------------~~a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS------F---MKWKPDYDSAASEY------------AKAAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC------S---SSCSCCHHHHHHHH------------HHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc------c---cCCCCCHHHHHHHH------------HHHHHHHHHcCCHHHHHHHHHH
Confidence 4555666666665554321 11 0 11147788885544 4457889999999999999988
Q ss_pred hhhC----CCC--CHHHHHHHHHHhcccCChHHHHHHHHHHHHhCC---Cc--chhHHHHHHHHHHhhCCHHHHHHHHhc
Q 043637 469 MQWE----TRP--SKFTFETLLAACANISSLEQGKQIHCFVIRNCY---EI--NVVCRGALVEVYTKCCCLEYAIRVFKE 537 (693)
Q Consensus 469 ~~~~----~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~ 537 (693)
.... +.+ ...+|..+..+|...|++++|...+++..+... .+ ...++..+..+|.. |++++|+..+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7433 211 245788888999999999999999998876311 11 24567788888988 999999999988
Q ss_pred CCC-----CC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCCh-HHHHHHHHHHhccCcHHHHHHHHHH
Q 043637 538 SSS-----LD----VIICNSMILGFCHNERGREALEVFGLMKKE----GIKPDH-ITFHGILLACIHEGNVKLALQFFDS 603 (693)
Q Consensus 538 ~~~-----~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 603 (693)
... .+ ..+++.+...+...|++++|+..|++..+. +..+.. ..+..+..++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 661 11 457888999999999999999999998872 111111 3566666788888999999999999
Q ss_pred hHHhcCCCCChh---HHHHHHHHHHhcCChHHHHHH
Q 043637 604 MRCKYGIIPQLE---HYECMIKLYCRYGYMKELEDF 636 (693)
Q Consensus 604 ~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~ 636 (693)
.. .....++.. ....++..+ ..|+.+.+..+
T Consensus 221 al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 221 SY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred Hh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 86 322212222 234445544 67887777663
No 125
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.58 E-value=3.4e-07 Score=73.27 Aligned_cols=110 Identities=9% Similarity=-0.157 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHH
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKC 656 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 656 (693)
..+..+...+...|++++|...++++.. ..+.+...+..++..+.+.|++++|...+++.. .+.+...+..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3455555666666666666666666654 223345556666666666677777766666553 344556677777777
Q ss_pred HhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 657 RKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 657 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
...|++++|...++++++.+|+++..+..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 8888888888888888888888877777776553
No 126
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.57 E-value=1.8e-05 Score=75.38 Aligned_cols=228 Identities=10% Similarity=0.028 Sum_probs=161.4
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccC-ChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhh-C-CHH
Q 043637 453 YARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANIS-SLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKC-C-CLE 529 (693)
Q Consensus 453 ~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 529 (693)
..+.+..++|+++++++....+-+...++.--.++...+ .++++..+++.+....++ +...|+.-..++.+. + +++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred HHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence 344455578888888887776666677776666666667 588888888888876655 666676666666666 6 788
Q ss_pred HHHHHHhcCC---CCCHHHHHHHHHHHHhCCChH--------HHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCc----
Q 043637 530 YAIRVFKESS---SLDVIICNSMILGFCHNERGR--------EALEVFGLMKKEGIKP-DHITFHGILLACIHEGN---- 593 (693)
Q Consensus 530 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~---- 593 (693)
+++++++++. +.+..+|+.-...+.+.|.++ ++++.++++.+ ..| |...|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccccc
Confidence 8888888877 455667776665655555555 89999999999 456 56788888777777775
Q ss_pred ---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCh--------------------HHHHHHHHhCCC--------
Q 043637 594 ---VKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYM--------------------KELEDFVNRMPF-------- 642 (693)
Q Consensus 594 ---~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~-------- 642 (693)
++++++.+++++. -.+-|...|..+-..+.+.|+. .+...+..++..
T Consensus 221 ~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 221 SRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred hHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 7899999999885 3445666777777777776654 345555555542
Q ss_pred CCCHHhHHHHHHHHHhcCCccHHHHHHHHHh-hcCCCCCcchhh
Q 043637 643 NPTVPMLRKIFDKCRKNGYATLGEWAARRLN-ELNPWAPFQFKI 685 (693)
Q Consensus 643 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~ 685 (693)
.+++..+..+++.|...|+.++|..+++.+. +.+|-....+..
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 2556688889999999999999999999997 678855444443
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.56 E-value=4.9e-06 Score=79.27 Aligned_cols=158 Identities=10% Similarity=-0.086 Sum_probs=113.3
Q ss_pred HHHHHHhhCCHHHHHHHHhcCCC-----CCH----HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CC----hHHHHH
Q 043637 518 LVEVYTKCCCLEYAIRVFKESSS-----LDV----IICNSMILGFCHNERGREALEVFGLMKKEGIK-PD----HITFHG 583 (693)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ 583 (693)
.+..+...|++++|...+++... ++. ..+..+...+...|++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35567777888888888876441 221 13334666677778999999999998883222 22 236888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhc----CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-------CCCC-HHhHH
Q 043637 584 ILLACIHEGNVKLALQFFDSMRCKY----GIIPQ-LEHYECMIKLYCRYGYMKELEDFVNRMP-------FNPT-VPMLR 650 (693)
Q Consensus 584 l~~~~~~~g~~~~A~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~-~~~~~ 650 (693)
+...|...|++++|...++++.+.. +..+. ..++..++..|.+.|++++|+..+++.. .... ...+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999999999987421 11111 3367888899999999999999888663 1122 55788
Q ss_pred HHHHHHHhcCC-ccHHHHHHHHHhhc
Q 043637 651 KIFDKCRKNGY-ATLGEWAARRLNEL 675 (693)
Q Consensus 651 ~l~~~~~~~g~-~~~A~~~~~~~~~~ 675 (693)
.++..+...|+ +++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88888989994 59999999998874
No 128
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.56 E-value=1.1e-06 Score=92.81 Aligned_cols=147 Identities=7% Similarity=-0.116 Sum_probs=90.7
Q ss_pred cCChHHHHHHHHhhcCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHH
Q 043637 424 CGNLRSARIWFYQMSQR-R-DKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHC 501 (693)
Q Consensus 424 ~~~~~~a~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 501 (693)
.|++++|+..+.+.+.. | +...|..+...+...|++++|.+.+++.....+.+...+..+..++...|++++|...++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 35667777777666653 2 456677777777777888888888877776666667777777777777777777777777
Q ss_pred HHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhC---CChHHHHHHHHHHHH
Q 043637 502 FVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHN---ERGREALEVFGLMKK 571 (693)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~ 571 (693)
+..+.... +...+..+..+|.+.|++++|.+.+++.. +.+...+..+...+... |+.++|.+.+++..+
T Consensus 82 ~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 82 QASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 77775433 45566666677777777777777776654 34455666667777776 777777777777666
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.53 E-value=4.8e-07 Score=74.02 Aligned_cols=108 Identities=8% Similarity=-0.122 Sum_probs=47.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHh
Q 043637 581 FHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRK 658 (693)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 658 (693)
+..+...+...|++++|...++++... .+.+...+..++..+...|++++|+..+++.. .+.+...+..++..+..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 333334444444444444444444321 12233334444444444444444444444332 22233344444445555
Q ss_pred cCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 659 NGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 659 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
.|++++|...++++++++|+++..+..++.+|
T Consensus 93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 124 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELDPDNETYKSNLKIAE 124 (131)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 55555555555555555555555544444443
No 130
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.53 E-value=4.7e-07 Score=77.74 Aligned_cols=96 Identities=9% Similarity=-0.057 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 043637 542 DVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECM 620 (693)
Q Consensus 542 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 620 (693)
+...|..+...+...|++++|++.|++..+ +.| +...|..+..+|...|++++|+..++++.+. .+.+...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 344666667777777777777777777776 445 3456666667777777777777777777642 23345566666
Q ss_pred HHHHHhcCChHHHHHHHHhCC
Q 043637 621 IKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 621 ~~~~~~~g~~~~A~~~~~~~~ 641 (693)
..+|.+.|++++|+..|++..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHH
Confidence 667777777777777666553
No 131
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.52 E-value=1.5e-05 Score=75.44 Aligned_cols=224 Identities=6% Similarity=-0.101 Sum_probs=141.4
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHhcccCC----------hHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhC--CH
Q 043637 461 EAMTSFSEMQWETRPSKFTFETLLAACANISS----------LEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCC--CL 528 (693)
Q Consensus 461 ~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~ 528 (693)
+|++.++.+....+-+...++.--..+...+. ++++..+++.+....++ +..+|+.-..++.+.+ .+
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccH
Confidence 55555555555444444433332222222221 45666666666665544 5556666556666666 37
Q ss_pred HHHHHHHhcCC---CCCHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhcc------------
Q 043637 529 EYAIRVFKESS---SLDVIICNSMILGFCHNER-GREALEVFGLMKKEGIKP-DHITFHGILLACIHE------------ 591 (693)
Q Consensus 529 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~------------ 591 (693)
++++.+++++. +.+..+|+.-...+...|. ++++++.++++.+ ..| |...|+.....+...
T Consensus 127 ~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~ 204 (331)
T 3dss_A 127 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 204 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhhhcccccccccc
Confidence 77777777766 5667777777777777777 5888888888888 455 456666655544443
Q ss_pred --CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc-----------CChHHHHHHHHhCC-CCC-CHHhHHHHHHHH
Q 043637 592 --GNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRY-----------GYMKELEDFVNRMP-FNP-TVPMLRKIFDKC 656 (693)
Q Consensus 592 --g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~ 656 (693)
+.++++++.+++... -.+-|...|+.+-..+.+. +.++++++.++++. ..| +.-.+..++...
T Consensus 205 ~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~ 282 (331)
T 3dss_A 205 PENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 282 (331)
T ss_dssp CHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHH
Confidence 567888888888875 3344555666555555554 45778888888775 233 333333333221
Q ss_pred ---HhcCCccHHHHHHHHHhhcCCCCCcchhhhhhc
Q 043637 657 ---RKNGYATLGEWAARRLNELNPWAPFQFKITTNR 689 (693)
Q Consensus 657 ---~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 689 (693)
...|..++....+.++.++||...+.|..|.+-
T Consensus 283 ~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 283 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 235677889999999999999998988888654
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.50 E-value=6.5e-06 Score=78.41 Aligned_cols=159 Identities=9% Similarity=-0.075 Sum_probs=91.2
Q ss_pred HHHHHHHhhCCHHHHHHHHhcCC---CCCH------HHHHHHHHHHHhCCChHHHHHHHHHHHHCCC---CCC--hHHHH
Q 043637 517 ALVEVYTKCCCLEYAIRVFKESS---SLDV------IICNSMILGFCHNERGREALEVFGLMKKEGI---KPD--HITFH 582 (693)
Q Consensus 517 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~ 582 (693)
..+..+...|++++|.+.+++.. +... ..+..+...+...|++++|+..+++..+... .+. ..+++
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 34455556666666666655332 1111 1233344555666777777777777665211 111 23566
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCCC-------CC-CHHhH
Q 043637 583 GILLACIHEGNVKLALQFFDSMRCKYGIIPQ-----LEHYECMIKLYCRYGYMKELEDFVNRMPF-------NP-TVPML 649 (693)
Q Consensus 583 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~-~~~~~ 649 (693)
.+...|...|++++|...++++.+.....|+ ..++..++..|.+.|++++|+..+++... .. ....+
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 6667777777777777777776621111122 14566677777777777777777765530 01 13456
Q ss_pred HHHHHHHHhcCCccHH-HHHHHHHhhc
Q 043637 650 RKIFDKCRKNGYATLG-EWAARRLNEL 675 (693)
Q Consensus 650 ~~l~~~~~~~g~~~~A-~~~~~~~~~~ 675 (693)
..++..|...|++++| ...+++++++
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6667777777777777 6666666653
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.49 E-value=4.4e-07 Score=73.82 Aligned_cols=107 Identities=7% Similarity=-0.192 Sum_probs=60.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHH
Q 043637 580 TFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCR 657 (693)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 657 (693)
.+..+...+.+.|++++|+..+++..+ -.+.+...|..+..+|.+.|++++|+..+++.. .+.+...+..++.++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 344445555555555556555555553 122334555555555666666666666555543 3344555666666666
Q ss_pred hcCCccHHHHHHHHHhhcC------CCCCcchhhhhh
Q 043637 658 KNGYATLGEWAARRLNELN------PWAPFQFKITTN 688 (693)
Q Consensus 658 ~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~ 688 (693)
..|++++|...++++++++ |+++.....+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 6667777777777777766 655555555443
No 134
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.48 E-value=1.3e-06 Score=82.50 Aligned_cols=191 Identities=10% Similarity=-0.082 Sum_probs=118.7
Q ss_pred HHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHH
Q 043637 477 KFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGF 553 (693)
Q Consensus 477 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 553 (693)
...+..+...+...|++++|...+++..+.... +...+..+..+|.+.|++++|...+++.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 445555666666777777777777777665433 56667777778888888888888887765 45667888888999
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 043637 554 CHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKE 632 (693)
Q Consensus 554 ~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 632 (693)
...|++++|+..|++..+ +.|+. ..+...+....+. .++.. +..... ...+.+......+... ..|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~-~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS--LAKEQRLNFGDDIPSALRI---AKKKR-WNSIEE-RRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH--HHHHTTCCCCSHHHHHHHH---HHHHH-HHHHHH-TCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH--hCccchhhHHHHHHHHHHH---HHHHH-HHHHHH-HHHhhhHHHHHHHHHH--HHHHHHH
Confidence 999999999999998887 44532 1222222222211 11111 122222 2445555555555333 3688899
Q ss_pred HHHHHHhCC-CCCCH-HhHHHHHHHHHhc-CCccHHHHHHHHHhhcCC
Q 043637 633 LEDFVNRMP-FNPTV-PMLRKIFDKCRKN-GYATLGEWAARRLNELNP 677 (693)
Q Consensus 633 A~~~~~~~~-~~~~~-~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p 677 (693)
|++.+++.. ..|+. .....+...+... +.+++|.+.++++.+..+
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 998887764 34443 3344444444443 567888888888877443
No 135
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.48 E-value=1.8e-06 Score=69.90 Aligned_cols=104 Identities=8% Similarity=-0.093 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKL 623 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 623 (693)
.+......+.+.|++++|++.|++.++ +.| +...|..+..++...|++++|+..++++.+ -.+.+...|..+..+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHHHH
Confidence 455566677777777777777777776 455 346666677777777777777777777764 223345667777777
Q ss_pred HHhcCChHHHHHHHHhCC--CCCCHHhHHHH
Q 043637 624 YCRYGYMKELEDFVNRMP--FNPTVPMLRKI 652 (693)
Q Consensus 624 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 652 (693)
|...|++++|+..|++.. .+.+...+..+
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 777777777777777664 33344444333
No 136
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=1.7e-06 Score=72.59 Aligned_cols=109 Identities=11% Similarity=-0.084 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHH
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ----LEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKI 652 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 652 (693)
..+..+...+...|++++|...+++..+ ..|+ ...+..+..+|.+.|++++|+..+++.. .+.+...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 4455555555566666666666665542 2333 4455555666666666666666665543 23345566666
Q ss_pred HHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 653 FDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 653 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
...+...|++++|...++++++++|+++.....++.+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 77777777777777777777777777776666665553
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.45 E-value=3.8e-06 Score=74.96 Aligned_cols=97 Identities=10% Similarity=-0.058 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-C-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----
Q 043637 544 IICNSMILGFCHNERGREALEVFGLMKKE----GIKP-D-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ---- 613 (693)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~---- 613 (693)
.++..+...+...|++++|.+.+++..+. |-.| . ...+..+...+...|++++|...+++..+......+
T Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 146 (203)
T 3gw4_A 67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 35566666777777777777777665552 1122 1 244666667777788888888877777642111122
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 614 LEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 614 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
...+..+...+.+.|++++|...+++.
T Consensus 147 ~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 147 ACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 223456677777778887777777654
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.44 E-value=3e-06 Score=75.58 Aligned_cols=154 Identities=12% Similarity=0.047 Sum_probs=113.2
Q ss_pred hhCCHHHHHH---HHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH----CCCCCC-hHHHHHHHHHHhccCcHH
Q 043637 524 KCCCLEYAIR---VFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKK----EGIKPD-HITFHGILLACIHEGNVK 595 (693)
Q Consensus 524 ~~~~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g~~~ 595 (693)
..|++++|.+ .+..........+..+...+...|++++|...+++..+ .|..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566777777 55443334566788888888999999999998888766 222332 367788889999999999
Q ss_pred HHHHHHHHhHHhcCCCC-C----hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCCHH----hHHHHHHHHHhcCCc
Q 043637 596 LALQFFDSMRCKYGIIP-Q----LEHYECMIKLYCRYGYMKELEDFVNRMP----FNPTVP----MLRKIFDKCRKNGYA 662 (693)
Q Consensus 596 ~A~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~----~~~~l~~~~~~~g~~ 662 (693)
+|...+++..+.....+ + ...+..+...+...|++++|...+++.. ..++.. .+..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 99999999875322222 2 3457788899999999999999998764 223332 356788889999999
Q ss_pred cHHHHHHHHHhhcCC
Q 043637 663 TLGEWAARRLNELNP 677 (693)
Q Consensus 663 ~~A~~~~~~~~~~~p 677 (693)
++|...+++++++..
T Consensus 164 ~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 164 LEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988643
No 139
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.44 E-value=2e-05 Score=75.05 Aligned_cols=167 Identities=10% Similarity=-0.051 Sum_probs=97.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCC--CCCHH----HHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 043637 448 AVLTGYARRGQSEEAMTSFSEMQWET--RPSKF----TFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEV 521 (693)
Q Consensus 448 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 521 (693)
..+..+...|++++|.+.+++..... .|+.. .+..+...+...++++.|...++++.+.........
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~------- 152 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY------- 152 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT-------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH-------
Confidence 34667778888888888888876544 33321 233455566667777888777777776322211100
Q ss_pred HHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH----C-CCCCCh-HHHHHHHHHHhccCcHH
Q 043637 522 YTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKK----E-GIKPDH-ITFHGILLACIHEGNVK 595 (693)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~-~~~~~l~~~~~~~g~~~ 595 (693)
....+++.+...|...|++++|+..++++.+ . +..|.. .++..+...|.+.|+++
T Consensus 153 -------------------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~ 213 (293)
T 3u3w_A 153 -------------------QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYE 213 (293)
T ss_dssp -------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred -------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHH
Confidence 0012355555666666666666666666553 1 112222 35666777777777777
Q ss_pred HHHHHHHHhHHh---cCCCCC-hhHHHHHHHHHHhcCC-hHHHHHHHHhC
Q 043637 596 LALQFFDSMRCK---YGIIPQ-LEHYECMIKLYCRYGY-MKELEDFVNRM 640 (693)
Q Consensus 596 ~A~~~~~~~~~~---~~~~p~-~~~~~~l~~~~~~~g~-~~~A~~~~~~~ 640 (693)
+|+..+++..+. .+..+. ...|..+..+|.+.|+ +++|...+++.
T Consensus 214 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 214 ESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 777777766541 111222 4567777777777774 47777666654
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.43 E-value=2.5e-07 Score=87.53 Aligned_cols=172 Identities=6% Similarity=-0.120 Sum_probs=121.0
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHH
Q 043637 511 NVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILL 586 (693)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~ 586 (693)
+...+..+...+.+.|++++|...+++.. +.+...|..+..++.+.|++++|+..+++..+ +.|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 34566778888999999999999999876 55788999999999999999999999999998 5675 578888889
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHH
Q 043637 587 ACIHEGNVKLALQFFDSMRCKYGIIPQL-EHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLG 665 (693)
Q Consensus 587 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 665 (693)
++...|++++|...++++.+. .|+. ..+...+....+.++...... ......+.+......+... . .|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l-~-~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL-I-AAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH-H-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH-H-HHHHHHH
Confidence 999999999999999998752 1211 111112222222222222222 2223334444444444333 2 6889999
Q ss_pred HHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 666 EWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 666 ~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
...++++++++|++......+..++
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~ 179 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIE 179 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHH
T ss_pred HHHHHhhhccccchhhhhhHHHHHH
Confidence 9999999999998765555554443
No 141
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.43 E-value=6.6e-05 Score=70.69 Aligned_cols=52 Identities=6% Similarity=-0.110 Sum_probs=27.2
Q ss_pred CChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChH--HHHHHHHHHHHhCC
Q 043637 457 GQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLE--QGKQIHCFVIRNCY 508 (693)
Q Consensus 457 ~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~ 508 (693)
++++++++.++++....+-+...+..-..++...|.++ ++.+.++++++..+
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~ 177 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL 177 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence 45555666666555544445555544444444445444 55555555555443
No 142
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.42 E-value=6.7e-07 Score=74.81 Aligned_cols=102 Identities=9% Similarity=-0.100 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 043637 542 DVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECM 620 (693)
Q Consensus 542 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 620 (693)
+...+..+...+.+.|++++|+..|++..+ +.|+ ...|..+..+|...|++++|+..|+++.+. .+.++..|..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~l 110 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHH
Confidence 455777788888899999999999999888 5674 577888888999999999999999998852 33457778888
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCCCHH
Q 043637 621 IKLYCRYGYMKELEDFVNRMP-FNPTVP 647 (693)
Q Consensus 621 ~~~~~~~g~~~~A~~~~~~~~-~~~~~~ 647 (693)
..+|.+.|++++|+..|++.. ..|+.+
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999988775 345544
No 143
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.41 E-value=4e-06 Score=71.89 Aligned_cols=127 Identities=9% Similarity=-0.045 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKL 623 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 623 (693)
.+..+...+...|++++|...+++..+ ..| +...+..+..++...|++++|...+++..+ ..+.+...+..++.+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHH
Confidence 456666777777888888888877777 344 456677777777778888888888887775 233456667777777
Q ss_pred HHhcCChHHHHHHHHhCC--CCCCHHhHHH--HHHHHHhcCCccHHHHHHHHHhhc
Q 043637 624 YCRYGYMKELEDFVNRMP--FNPTVPMLRK--IFDKCRKNGYATLGEWAARRLNEL 675 (693)
Q Consensus 624 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~ 675 (693)
+.+.|++++|...+++.. .+.+...+.. .+..+...|++++|...+++..++
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 888888888888877764 2334444433 333356677888888887776653
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.41 E-value=2.6e-06 Score=78.25 Aligned_cols=137 Identities=6% Similarity=-0.107 Sum_probs=103.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhc
Q 043637 515 RGALVEVYTKCCCLEYAIRVFKESS--SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD--HITFHGILLACIH 590 (693)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~ 590 (693)
.-.+...+...|++++|.++|+... .|+......+...+.+.+++++|+..|+...... .|. ...+..+..++..
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 3456677888999999999999987 4544466777778999999999999998665521 121 2367778899999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHhHHHHH
Q 043637 591 EGNVKLALQFFDSMRCKYGIIPQ--LEHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVPMLRKIF 653 (693)
Q Consensus 591 ~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~ 653 (693)
.|++++|+..|++... ....|. .........++.+.|+.++|...|+++. ..|+...+..|.
T Consensus 184 LG~~~eAl~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL~ 248 (282)
T 4f3v_A 184 LALFTEAERRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAALK 248 (282)
T ss_dssp TTCHHHHHHHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHh
Confidence 9999999999999974 232254 4456778888999999999999999986 345544544443
No 145
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.40 E-value=3.4e-06 Score=72.38 Aligned_cols=123 Identities=11% Similarity=-0.025 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHh
Q 043637 514 CRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACI 589 (693)
Q Consensus 514 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~ 589 (693)
.+..+...+...|++++|...+++.. +.+...+..+...+...|++++|...+++..+ ..| +...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHH
Confidence 34445556666666777666666544 44566777788888888888888888888877 345 4567777778888
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHH--HHHHHHHhcCChHHHHHHHHhC
Q 043637 590 HEGNVKLALQFFDSMRCKYGIIPQLEHYE--CMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 590 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
..|++++|...++++.+. .+.+...+. .++..+.+.|++++|+..+++.
T Consensus 93 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 888888888888888753 222334443 3334467778888888877654
No 146
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.40 E-value=5.6e-06 Score=66.78 Aligned_cols=112 Identities=11% Similarity=0.092 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 043637 543 VIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMI 621 (693)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 621 (693)
...|..+...+...|++++|.+.++++.+. .| +...+..+...+...|++++|...++++.+. .+.+...+..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHH
Confidence 345666667777777777777777777763 34 3456666777777777777777777777642 334556667777
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHh
Q 043637 622 KLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRK 658 (693)
Q Consensus 622 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 658 (693)
..|.+.|++++|...++++. .+.+...+..+...+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 77777777777777777663 23444455555544443
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.40 E-value=4e-06 Score=68.65 Aligned_cols=116 Identities=8% Similarity=-0.106 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 043637 541 LDVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYEC 619 (693)
Q Consensus 541 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 619 (693)
.+...|..+...+...|++++|.+.+++..+ ..| +...+..+..++...|++++|...++++.+ -.+.+...+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~ 89 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ--LEPTFIKGYTR 89 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCchHHHHH
Confidence 3455677777888888888888888888877 445 456777777888888888888888888875 23345667777
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcC
Q 043637 620 MIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNG 660 (693)
Q Consensus 620 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 660 (693)
+..+|.+.|++++|+..+++.. .+.+...+..+...+...|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 8888888888888888887764 2334445555555555544
No 148
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.39 E-value=2.2e-06 Score=67.65 Aligned_cols=101 Identities=13% Similarity=-0.027 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCC--CHHhHHHHH
Q 043637 578 HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNP--TVPMLRKIF 653 (693)
Q Consensus 578 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~--~~~~~~~l~ 653 (693)
...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++|+..+++.. .+. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 355666777777888888888888877752 33456667777788888888888888887664 234 567777888
Q ss_pred HHHHhc-CCccHHHHHHHHHhhcCCCCC
Q 043637 654 DKCRKN-GYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 654 ~~~~~~-g~~~~A~~~~~~~~~~~p~~~ 680 (693)
..+... |++++|...++++++..|.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888888 888999999998888888654
No 149
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.38 E-value=6.9e-06 Score=66.88 Aligned_cols=116 Identities=14% Similarity=-0.037 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 043637 543 VIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMI 621 (693)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 621 (693)
...+..+...+...|++++|...+++..+. .| +...+..+...+...|++++|...+++..+. .+.+...+..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 87 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHH
Confidence 445666667777777777777777777763 44 4566666777777777777777777777642 233466677777
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCc
Q 043637 622 KLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYA 662 (693)
Q Consensus 622 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 662 (693)
..|.+.|++++|...+++.. .+.+...+..+...+...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 77777777777777777664 344555666666666666654
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.37 E-value=2.9e-07 Score=82.01 Aligned_cols=152 Identities=5% Similarity=-0.087 Sum_probs=92.3
Q ss_pred HHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-h----------------
Q 043637 519 VEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-H---------------- 578 (693)
Q Consensus 519 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---------------- 578 (693)
+......|.++++.+.++... ......+..+...+...|++++|+..|++..+ +.|+ .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchhhHHHHHHHHHH
Confidence 334455566666666665433 12344677778888888999999999998888 3443 2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHH
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKC 656 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 656 (693)
..+..+..+|...|++++|+..++++.+ -.+.+...+..+..+|...|++++|+..|++.. .+.+...+..+...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 5677777888888888888888888875 234456777778888888888888888887764 344556666666666
Q ss_pred HhcCCccHHH-HHHHHHhh
Q 043637 657 RKNGYATLGE-WAARRLNE 674 (693)
Q Consensus 657 ~~~g~~~~A~-~~~~~~~~ 674 (693)
...|+..++. ..++.++.
T Consensus 167 ~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6665555544 34444433
No 151
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.37 E-value=1.3e-06 Score=70.18 Aligned_cols=99 Identities=9% Similarity=-0.124 Sum_probs=68.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHH
Q 043637 580 TFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCR 657 (693)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 657 (693)
.+..+...+.+.|++++|+..++++.+ ..+.+...+..+..++.+.|++++|+..+++.. .+.+...+..+...+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555677777888888888887774 233356667777777888888888888877764 3456667777888888
Q ss_pred hcCCccHHHHHHHHHhhcCCCCC
Q 043637 658 KNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 658 ~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
..|++++|...++++++++|+++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888888888654
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.37 E-value=2.5e-06 Score=82.95 Aligned_cols=118 Identities=10% Similarity=-0.069 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCC--CC-C---------------HHHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 043637 512 VVCRGALVEVYTKCCCLEYAIRVFKESS--SL-D---------------VIICNSMILGFCHNERGREALEVFGLMKKEG 573 (693)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 573 (693)
...+..+...|.+.|++++|...|++.. .| + ...|..+..++.+.|++++|+..+++..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-- 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE-- 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 4455556666666666666666666544 22 2 34556666666666666666666666666
Q ss_pred CCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 043637 574 IKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKEL 633 (693)
Q Consensus 574 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 633 (693)
+.|+ ...|..+..+|...|++++|+..|+++.+. .+.+...+..+..++.+.|+.++|
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3443 355555556666666666666666666531 222344555555666666666655
No 153
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.35 E-value=1.9e-05 Score=75.17 Aligned_cols=96 Identities=13% Similarity=0.018 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCC-----hHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCC-Ch
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKE-GIKPD-----HITFHGILLACIHEGNVKLALQFFDSMRCKY---GIIP-QL 614 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~p-~~ 614 (693)
+|+.+...|...|++++|...+++..+. ...|+ ..++..+...|...|++++|+..+++..+.. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 5666777777777777777777776521 01222 1466777777888888888888877775421 1111 14
Q ss_pred hHHHHHHHHHHhcCChHHH-HHHHHhC
Q 043637 615 EHYECMIKLYCRYGYMKEL-EDFVNRM 640 (693)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A-~~~~~~~ 640 (693)
..|..+..+|.+.|+.++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 5677777788888888877 6656554
No 154
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.35 E-value=2.3e-06 Score=71.65 Aligned_cols=92 Identities=15% Similarity=0.067 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKL 623 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 623 (693)
.+..+...+...|++++|+..|++... ..| +...|..+..+|...|++++|+..++++... .+.++..+..+..+
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHH
Confidence 344444455555555555555555554 233 2344444445555555555555555555431 12234444455555
Q ss_pred HHhcCChHHHHHHHHhC
Q 043637 624 YCRYGYMKELEDFVNRM 640 (693)
Q Consensus 624 ~~~~g~~~~A~~~~~~~ 640 (693)
|...|++++|+..|++.
T Consensus 99 ~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLA 115 (148)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 55555555555555544
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.30 E-value=2.9e-06 Score=70.01 Aligned_cols=95 Identities=9% Similarity=-0.077 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 043637 542 DVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECM 620 (693)
Q Consensus 542 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 620 (693)
+...|..+...+...|++++|...|++..+ ..|+ ...+..+..++...|++++|...++++.+. .+.+...+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHH
Confidence 444555555555555555555555555555 2332 344555555555555555555555555531 12234444455
Q ss_pred HHHHHhcCChHHHHHHHHhC
Q 043637 621 IKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 621 ~~~~~~~g~~~~A~~~~~~~ 640 (693)
..+|...|++++|+..+++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 55555555555555555443
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.30 E-value=5.4e-06 Score=67.25 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 544 IICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
..+..+...+.+.|++++|++.|++.++ +.|+ ...|..+..+|...|++++|++.+++..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3455666666667777777777776666 4554 35566666666666777777666666653
No 157
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.27 E-value=2.5e-06 Score=82.93 Aligned_cols=133 Identities=10% Similarity=-0.013 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChH------------------HHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKPDHI------------------TFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
.+..+...+.+.|++++|+..|++..+ +.|+.. .|..+..+|.+.|++++|+..++++.+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555666666677777777766665 345432 788888999999999999999999985
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHhHHHHHHHH-HhcCCccHHHHHHHHHhhcCCCCCc
Q 043637 607 KYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-FNP-TVPMLRKIFDKC-RKNGYATLGEWAARRLNELNPWAPF 681 (693)
Q Consensus 607 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~p~~~~ 681 (693)
..+.+...+..+..+|...|++++|+..|++.. ..| +...+..+.... ...+..+++...++++++..|+++.
T Consensus 259 --~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 259 --EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp --HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred --hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 234467888999999999999999999999886 233 444555555543 3456788899999999999997763
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.27 E-value=1.2e-06 Score=77.91 Aligned_cols=150 Identities=11% Similarity=-0.039 Sum_probs=86.8
Q ss_pred HhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCH----------------HHH
Q 043637 486 ACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDV----------------IIC 546 (693)
Q Consensus 486 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~----------------~~~ 546 (693)
.....|+++.+.+.|+.-...... ....+..+...+...|++++|...|++.. +.+. ..|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQ-SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 334455566665555433221111 33445566677777788888888777654 2232 567
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 043637 547 NSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYC 625 (693)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 625 (693)
..+..++...|++++|+..+++..+ +.|+ ...+..+..++...|++++|...|++..+. .+-+...+..+..++.
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHH
Confidence 7777777888888888888888777 4553 466777777788888888888888877642 2334556666777777
Q ss_pred hcCChHHHH-HHHHhC
Q 043637 626 RYGYMKELE-DFVNRM 640 (693)
Q Consensus 626 ~~g~~~~A~-~~~~~~ 640 (693)
+.|+.+++. ..+..+
T Consensus 168 ~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 766666655 344444
No 159
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.27 E-value=3.8e-06 Score=81.57 Aligned_cols=130 Identities=4% Similarity=-0.115 Sum_probs=109.7
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh----------------HHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 542 DVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDH----------------ITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 542 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
+...|..+...+.+.|++++|+..|++..+ +.|+. ..|..+..++.+.|++++|+..++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456888899999999999999999999998 55654 788888899999999999999999998
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHH-HHHHHHHhhc
Q 043637 606 CKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLG-EWAARRLNEL 675 (693)
Q Consensus 606 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 675 (693)
+. .+.+...+..+..+|...|++++|+..|++.. .+.+...+..+...+...|+.++| ...++++++.
T Consensus 224 ~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 224 EL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 62 34467888999999999999999999999875 456677888888899999999888 5577777663
No 160
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.26 E-value=4.6e-06 Score=72.51 Aligned_cols=92 Identities=5% Similarity=0.054 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHH-HHhCCCh--HHHHHHHHHHHHCCCCCC-hHHHHHHH
Q 043637 513 VCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILG-FCHNERG--REALEVFGLMKKEGIKPD-HITFHGIL 585 (693)
Q Consensus 513 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~-~~~~g~~--~~A~~~~~~m~~~g~~p~-~~~~~~l~ 585 (693)
..+..+..+|...|++++|...+++.. +.+...+..+..+ +...|++ ++|...+++..+ ..|+ ...+..+.
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la 122 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALA--LDSNEITALMLLA 122 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH--hCCCcHHHHHHHH
Confidence 333444444444444444444444333 3344455555555 5566666 666666666666 3443 35555566
Q ss_pred HHHhccCcHHHHHHHHHHhHH
Q 043637 586 LACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 586 ~~~~~~g~~~~A~~~~~~~~~ 606 (693)
..+...|++++|...++++.+
T Consensus 123 ~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 123 SDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHh
Confidence 666666777777776666654
No 161
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.25 E-value=2.1e-05 Score=81.78 Aligned_cols=162 Identities=9% Similarity=-0.103 Sum_probs=129.4
Q ss_pred CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccC
Q 043637 527 CLEYAIRVFKESS---SLDVIICNSMILGFCHNER----------GREALEVFGLMKKEGIKPD-HITFHGILLACIHEG 592 (693)
Q Consensus 527 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g 592 (693)
..++|++.++++. +.+..+|+.-...+...|+ ++++++.++++.+ ..|. ..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcc
Confidence 3456677776665 4455677766666666666 8999999999998 5674 578888888888889
Q ss_pred --cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhc--------
Q 043637 593 --NVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYG-YMKELEDFVNRMP--FNPTVPMLRKIFDKCRKN-------- 659 (693)
Q Consensus 593 --~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~-------- 659 (693)
+++++++.++++.+ -.+-+...|+.-..++.+.| ..+++++.++++. .+.+...|......+...
T Consensus 122 ~~~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 77999999999986 34557778888888888888 8999999999886 456788888888877663
Q ss_pred ------CCccHHHHHHHHHhhcCCCCCcchhhhhhcccC
Q 043637 660 ------GYATLGEWAARRLNELNPWAPFQFKITTNRFDR 692 (693)
Q Consensus 660 ------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~~ 692 (693)
+.++++.+.++++++++|+|..++..+++++..
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 456899999999999999999999999998753
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.24 E-value=6.5e-06 Score=67.03 Aligned_cols=88 Identities=11% Similarity=0.041 Sum_probs=42.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHH
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGIKPDH----ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ---LEHYECMI 621 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~ 621 (693)
+...+...|++++|...|+++.+ ..|+. ..+..+..++...|++++|...++++... .+.+ +..+..+.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la 83 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLE--LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH--HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHH
Confidence 34445555555555555555555 23322 24444455555555555555555555432 1111 33344444
Q ss_pred HHHHhcCChHHHHHHHHhC
Q 043637 622 KLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 622 ~~~~~~g~~~~A~~~~~~~ 640 (693)
.+|.+.|++++|...|+++
T Consensus 84 ~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 4455555555555544444
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.23 E-value=1.2e-05 Score=65.09 Aligned_cols=105 Identities=12% Similarity=0.031 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCC----HHhH
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-----FNPT----VPML 649 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~ 649 (693)
..+..+...+.+.|++++|+..|+++.+. .+.+...|..+..+|.+.|++++|+..+++.. ..++ ...+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 34556666777777777777777777642 23345566667777777777777777766553 1111 1245
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhh
Q 043637 650 RKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKIT 686 (693)
Q Consensus 650 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 686 (693)
..++..+...|++++|...++++++..| ++.....|
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~l 122 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKKV 122 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHHHH
Confidence 5566666667777777777777777666 44444333
No 164
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.22 E-value=3.9e-06 Score=69.23 Aligned_cols=106 Identities=7% Similarity=-0.137 Sum_probs=68.8
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-----C-----hhHHHHHHHHHHhcCChHHHHHHHHhCC-C-------C
Q 043637 582 HGILLACIHEGNVKLALQFFDSMRCKYGIIP-----Q-----LEHYECMIKLYCRYGYMKELEDFVNRMP-F-------N 643 (693)
Q Consensus 582 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-------~ 643 (693)
......+.+.|++++|+..|++..+-....| + ...|..+..++.+.|++++|+..+++.. . .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 3334455555555555555555553111100 1 1256666666777777777766666553 2 4
Q ss_pred CC-HHhH----HHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhh
Q 043637 644 PT-VPML----RKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITT 687 (693)
Q Consensus 644 ~~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 687 (693)
|+ ...| ...+.++...|++++|...|+++++++|+|.+...-+.
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 44 4577 88889999999999999999999999999887665543
No 165
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.20 E-value=3.2e-06 Score=72.23 Aligned_cols=65 Identities=17% Similarity=0.047 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 616 HYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 616 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
.|..+..+|.+.|++++|+..+++.. .+.+...+..++.++...|++++|...++++++++|+++
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 34444555555555555555554442 233444555555555555555555555555555555554
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=2.7e-05 Score=65.02 Aligned_cols=111 Identities=6% Similarity=-0.138 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhH
Q 043637 541 LDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD----HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEH 616 (693)
Q Consensus 541 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 616 (693)
.+...+..+...+...|++++|.+.|++..+ ..|+ ...+..+..++...|++++|+..+++..+. .+.+...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 101 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKA 101 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHH
Confidence 4556777788888888888888888888887 5666 466777778888888888888888888752 2335667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHH
Q 043637 617 YECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDK 655 (693)
Q Consensus 617 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 655 (693)
+..+..+|.+.|++++|...+++.. .+.+...+..+...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 7788888888888888888888764 23344444444333
No 167
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.19 E-value=1.4e-05 Score=64.63 Aligned_cols=94 Identities=10% Similarity=-0.089 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 043637 544 IICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIK 622 (693)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 622 (693)
..|..+...+.+.|++++|+..|++..+ +.| +...|..+..++...|++++|+..++++.+. .+.+...+..+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 3455666667777777777777777776 345 3466666777777777777777777777642 2334566677777
Q ss_pred HHHhcCChHHHHHHHHhCC
Q 043637 623 LYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 623 ~~~~~g~~~~A~~~~~~~~ 641 (693)
+|...|++++|+..+++..
T Consensus 81 ~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 81 AQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHH
Confidence 7777777777777777653
No 168
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.19 E-value=2.8e-05 Score=61.77 Aligned_cols=95 Identities=12% Similarity=-0.055 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 043637 543 VIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMI 621 (693)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 621 (693)
...+..+...+...|++++|...+++..+ ..| +...+..+...+...|++++|...++++.+. .+.+...+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a 79 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 34566677777888888888888888877 345 4566777778888888888888888888752 334566777788
Q ss_pred HHHHhcCChHHHHHHHHhCC
Q 043637 622 KLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 622 ~~~~~~g~~~~A~~~~~~~~ 641 (693)
.+|.+.|++++|...+++..
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 88888888888888887764
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.18 E-value=4.8e-06 Score=67.87 Aligned_cols=95 Identities=11% Similarity=0.054 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC-CCC----hhHH
Q 043637 544 IICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGI-IPQ----LEHY 617 (693)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~p~----~~~~ 617 (693)
..|..+...+...|++++|...+++..+. .| +...+..+...+...|++++|...++++...... .++ ...+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45666667777777777777777777763 34 3456666667777777777777777776642111 111 4455
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC
Q 043637 618 ECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 618 ~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
..++.+|.+.|++++|...+++.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHH
Confidence 55556666666666666666554
No 170
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.18 E-value=2.1e-05 Score=67.18 Aligned_cols=100 Identities=12% Similarity=0.008 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHH
Q 043637 512 VVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLA 587 (693)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~ 587 (693)
...+..+...+.+.|++++|+..|++.. +.+...|..+..++...|++++|+..+++..+ +.|+ ...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 3445555566666666666666666654 44667788888888888899999999988888 5665 5778888888
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC
Q 043637 588 CIHEGNVKLALQFFDSMRCKYGIIPQ 613 (693)
Q Consensus 588 ~~~~g~~~~A~~~~~~~~~~~~~~p~ 613 (693)
+...|++++|...|+++.+...-.++
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchH
Confidence 88899999999999888764333333
No 171
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.17 E-value=2.5e-05 Score=64.85 Aligned_cols=92 Identities=13% Similarity=0.007 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKL 623 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 623 (693)
.+..+...+...|++++|+..|++... ..| +...|..+..++...|++++|+..++++... .+.++..+..+..+
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHH
Confidence 444455556666666666666666665 344 3345555556666666666666666666541 22344555556666
Q ss_pred HHhcCChHHHHHHHHhC
Q 043637 624 YCRYGYMKELEDFVNRM 640 (693)
Q Consensus 624 ~~~~g~~~~A~~~~~~~ 640 (693)
|...|++++|+..|++.
T Consensus 96 ~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 66666666666666655
No 172
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.14 E-value=3.4e-06 Score=86.18 Aligned_cols=82 Identities=16% Similarity=0.144 Sum_probs=38.5
Q ss_pred HHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHH
Q 043637 522 YTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLA 597 (693)
Q Consensus 522 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A 597 (693)
+.+.|++++|.+.+++.. +.+...|..+..++.+.|++++|++.+++..+ +.|+ ...+..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 334455555555554433 22344444445555555555555555555444 2332 24444444445555555555
Q ss_pred HHHHHHhH
Q 043637 598 LQFFDSMR 605 (693)
Q Consensus 598 ~~~~~~~~ 605 (693)
.+.++++.
T Consensus 94 ~~~~~~al 101 (477)
T 1wao_1 94 LRDYETVV 101 (477)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.13 E-value=1.7e-05 Score=67.50 Aligned_cols=133 Identities=10% Similarity=-0.028 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CC----hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hh
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIK-PD----HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ----LE 615 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~ 615 (693)
++..+...+...|++++|...+++..+..-. ++ ..++..+...+...|++++|...+++..+.....++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555666666677777777777666552100 11 135666667777777777777777776542111111 33
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HHhHHHHHHHHHhcCCccHHHHHHHHHhhcCC
Q 043637 616 HYECMIKLYCRYGYMKELEDFVNRMP----FNPT----VPMLRKIFDKCRKNGYATLGEWAARRLNELNP 677 (693)
Q Consensus 616 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 677 (693)
.+..+...+...|++++|...+++.. ..++ ...+..+...+...|++++|...+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 45666777777788877777776553 1122 23556677777788888888888888877644
No 174
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.11 E-value=5e-05 Score=72.29 Aligned_cols=162 Identities=8% Similarity=-0.059 Sum_probs=122.9
Q ss_pred CCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhcc-C-cHHHHH
Q 043637 526 CCLEYAIRVFKESS---SLDVIICNSMILGFCHNE-RGREALEVFGLMKKEGIKPD-HITFHGILLACIHE-G-NVKLAL 598 (693)
Q Consensus 526 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~-g-~~~~A~ 598 (693)
+..++|+++++.+. +.+..+|+.--..+...| +++++++.++.+.. ..|. ..+|+.-...+... + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~--~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV--QNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 33455666666655 445567777777777777 58999999999988 5674 46777766666665 6 788999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCChH--------HHHHHHHhCC--CCCCHHhHHHHHHHHHhcCC-------
Q 043637 599 QFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMK--------ELEDFVNRMP--FNPTVPMLRKIFDKCRKNGY------- 661 (693)
Q Consensus 599 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~------- 661 (693)
++++++.+ ..+.+...|..-..++.+.|..+ ++++.++++. .+.+...|......+...+.
T Consensus 146 ~~~~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHH
Confidence 99999874 44556777777777777766666 8888888775 56678888888888877765
Q ss_pred ccHHHHHHHHHhhcCCCCCcchhhhhhccc
Q 043637 662 ATLGEWAARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 662 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
++++.+.++++++++|+|.+++..+.+++.
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~ 253 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLK 253 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 688999999999999999999998888764
No 175
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.08 E-value=0.00017 Score=68.27 Aligned_cols=187 Identities=8% Similarity=-0.051 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCC----------HHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCC--
Q 043637 494 EQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCC----------LEYAIRVFKESS---SLDVIICNSMILGFCHNER-- 558 (693)
Q Consensus 494 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~-- 558 (693)
++|....+.+...++. +...++.--.++...+. +++++.+++.+. +.+..+|+.-...+...|+
T Consensus 47 ~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 47 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 4677777777775543 33334433333333222 678888888776 6677888888888888884
Q ss_pred hHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCc-HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---------
Q 043637 559 GREALEVFGLMKKEGIKP-DHITFHGILLACIHEGN-VKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRY--------- 627 (693)
Q Consensus 559 ~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------- 627 (693)
+++++.+++++.+ ..| |...|+.-...+...|. ++++++.++++++ ..+-|...|+.....+.+.
T Consensus 126 ~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 126 WARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHHSCCC-----
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhhhccccccc
Confidence 8999999999999 566 56788877777777887 6999999999986 3345666676666665554
Q ss_pred -----CChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhc-----------CCccHHHHHHHHHhhcCCCCCcchhh
Q 043637 628 -----GYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKN-----------GYATLGEWAARRLNELNPWAPFQFKI 685 (693)
Q Consensus 628 -----g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~~ 685 (693)
+.++++++.+++.. .+.|...|..+-..+... +.++++.+.++.+++++|++.-.+..
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~ 277 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLT 277 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHH
Confidence 55788998888775 577888887666666554 35789999999999999987544333
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.08 E-value=0.00049 Score=69.65 Aligned_cols=161 Identities=6% Similarity=-0.158 Sum_probs=111.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCC--CCCH----HHHHHHHHHhcccCChHHHHHHHHHHHHh----CCC-cchhH
Q 043637 446 WNAVLTGYARRGQSEEAMTSFSEMQWET--RPSK----FTFETLLAACANISSLEQGKQIHCFVIRN----CYE-INVVC 514 (693)
Q Consensus 446 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 514 (693)
+..+...|...|++++|.+.+..+.... .++. ...+.+...+...|+.+.+..++...... +.. ....+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5667788888888888888888764332 2221 22333444556678888888888877651 222 23456
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCC---------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC--hH
Q 043637 515 RGALVEVYTKCCCLEYAIRVFKESS---------SLDVIICNSMILGFCHNERGREALEVFGLMKKE----GIKPD--HI 579 (693)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~ 579 (693)
+..+...|...|++++|..++++.. +.....+..++..|...|++++|...+++.... +.+|. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 7778888999999999988887643 112347888899999999999999999887652 11122 24
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 580 TFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
.+..+...+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456666788889999999988887754
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.08 E-value=2e-05 Score=80.18 Aligned_cols=129 Identities=6% Similarity=-0.096 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----------------hHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 542 DVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD----------------HITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 542 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
....|..+...+.+.|++++|+..|++..+ +.|+ ...|..+..+|.+.|++++|+..++++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 355788888999999999999999999988 4554 3678888888899999999999999888
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHH-HHHHHhh
Q 043637 606 CKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEW-AARRLNE 674 (693)
Q Consensus 606 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 674 (693)
+ -.+.+...|..+..+|.+.|++++|+..|+++. .+.+...+..+...+...|+.++|.. .+++++.
T Consensus 345 ~--~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 345 G--LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp H--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred h--cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 234467778888888999999999999888774 34455577777778887777776653 4454443
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.04 E-value=2.3e-06 Score=68.41 Aligned_cols=84 Identities=8% Similarity=0.020 Sum_probs=49.3
Q ss_pred CCChHHHHHHHHHHHHCCC-CCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 043637 556 NERGREALEVFGLMKKEGI-KPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKEL 633 (693)
Q Consensus 556 ~g~~~~A~~~~~~m~~~g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 633 (693)
.|++++|+..|++..+.+. .|+ ...+..+..+|...|++++|+..++++.+. .+-+...+..+..+|.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 4666777777777776321 232 355666667777777777777777777642 233455566666666666666666
Q ss_pred HHHHHhCC
Q 043637 634 EDFVNRMP 641 (693)
Q Consensus 634 ~~~~~~~~ 641 (693)
+..+++..
T Consensus 81 ~~~~~~al 88 (117)
T 3k9i_A 81 VELLLKII 88 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666553
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.03 E-value=0.00023 Score=72.09 Aligned_cols=56 Identities=9% Similarity=0.006 Sum_probs=32.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCC--CCH---------------HHHHHHHHHhcccCChHHHHHHHHHHHH
Q 043637 450 LTGYARRGQSEEAMTSFSEMQWETR--PSK---------------FTFETLLAACANISSLEQGKQIHCFVIR 505 (693)
Q Consensus 450 ~~~~~~~~~~~~a~~~~~~~~~~~~--p~~---------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 505 (693)
...+.+.|++++|++.|..+....+ .+. ..+..+...|...|++++|.+.+..+..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4556778888888888888765541 110 1244455555555555555555555443
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.02 E-value=1.6e-05 Score=64.63 Aligned_cols=107 Identities=10% Similarity=0.062 Sum_probs=67.0
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCC----hHHHHHHH
Q 043637 515 RGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGI--KPD----HITFHGIL 585 (693)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~~l~ 585 (693)
+..+...+...|++++|...+++.. +.+...+..+...+...|++++|...+++..+..- .++ ..++..+.
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 4444555555555555555555443 34555666777777777778888777777766310 111 55677777
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 043637 586 LACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLY 624 (693)
Q Consensus 586 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 624 (693)
.++...|++++|.+.++++.+. .|+......+..+.
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAE---HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 7888888888888888888752 34555555554443
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.00 E-value=8.8e-05 Score=60.12 Aligned_cols=101 Identities=12% Similarity=0.008 Sum_probs=63.2
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC---HHhHHHHH
Q 043637 582 HGILLACIHEGNVKLALQFFDSMRCKYGIIPQL---EHYECMIKLYCRYGYMKELEDFVNRMP--FNPT---VPMLRKIF 653 (693)
Q Consensus 582 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~---~~~~~~l~ 653 (693)
..+...+...|++++|...++++.+. .+.+. ..+..+..+|.+.|++++|+..+++.. .+.+ +..+..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 34455666777777777777777642 11222 356666677777777777777776653 2222 44556666
Q ss_pred HHHHhcCCccHHHHHHHHHhhcCCCCCcchh
Q 043637 654 DKCRKNGYATLGEWAARRLNELNPWAPFQFK 684 (693)
Q Consensus 654 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 684 (693)
.++...|++++|...++++++..|+++....
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 6777777777777777777777776654443
No 182
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.00 E-value=4.9e-05 Score=59.64 Aligned_cols=96 Identities=10% Similarity=-0.046 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC--ChhHHH
Q 043637 542 DVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP--QLEHYE 618 (693)
Q Consensus 542 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~ 618 (693)
+...+..+...+...|++++|...+++..+ ..| +...+..+..++...|++++|.+.++++.+ ..+. +...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~ 80 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN--VIEDEYNKDVWA 80 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSCCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCcccchHHHHH
Confidence 344556666777777777777777777777 344 346666777777777788888887777764 2233 466677
Q ss_pred HHHHHHHhc-CChHHHHHHHHhCC
Q 043637 619 CMIKLYCRY-GYMKELEDFVNRMP 641 (693)
Q Consensus 619 ~l~~~~~~~-g~~~~A~~~~~~~~ 641 (693)
.+..+|.+. |++++|++.+++..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHh
Confidence 777777777 88888877777664
No 183
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.99 E-value=7.9e-05 Score=61.16 Aligned_cols=100 Identities=7% Similarity=-0.198 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHH
Q 043637 577 DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFD 654 (693)
Q Consensus 577 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 654 (693)
+...+..+...+...|++++|...+++.... .+.+...+..+..+|.+.|++++|+..+++.. .+.+...+..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3455666666666777777777777766642 23345566666666777777777776666653 3445556666666
Q ss_pred HHHhcCCccHHHHHHHHHhhcCCC
Q 043637 655 KCRKNGYATLGEWAARRLNELNPW 678 (693)
Q Consensus 655 ~~~~~g~~~~A~~~~~~~~~~~p~ 678 (693)
.+...|++++|...++++++++|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 666677777777777777776665
No 184
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.93 E-value=5.8e-05 Score=60.37 Aligned_cols=90 Identities=10% Similarity=-0.025 Sum_probs=53.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 043637 547 NSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYC 625 (693)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 625 (693)
..+...+.+.|++++|+..+++..+ ..|+ ...|..+..++...|++++|+..++++.+. .+.+...+..+..+|.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3445555666666666666666666 3453 455555556666666666666666666531 2223455566666666
Q ss_pred hcCChHHHHHHHHhC
Q 043637 626 RYGYMKELEDFVNRM 640 (693)
Q Consensus 626 ~~g~~~~A~~~~~~~ 640 (693)
+.|++++|+..+++.
T Consensus 97 ~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 97 NEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 666666666666654
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.92 E-value=5.1e-05 Score=64.38 Aligned_cols=96 Identities=6% Similarity=-0.077 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hh
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKE----GIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ----LE 615 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~ 615 (693)
++..+...+...|++++|.+.+++..+. +-.+. ...+..+...+...|++++|.+.+++..+...-..+ ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 5666677777777777777777776552 11111 345666677888888888888888877642111111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 616 HYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 616 ~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
.+..+...|...|++++|...+++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5667778888888888888887754
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.90 E-value=9.9e-05 Score=75.35 Aligned_cols=117 Identities=13% Similarity=0.034 Sum_probs=94.8
Q ss_pred HHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCCh
Q 043637 483 LLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERG 559 (693)
Q Consensus 483 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~ 559 (693)
+...+...|++++|...+++..+.... +...+..+..+|.+.|++++|+..+++.. +.+...|..+..+|...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 344577889999999999999987544 57888999999999999999999999876 55678999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCC-hHHHHHHHHH--HhccCcHHHHHHHHH
Q 043637 560 REALEVFGLMKKEGIKPD-HITFHGILLA--CIHEGNVKLALQFFD 602 (693)
Q Consensus 560 ~~A~~~~~~m~~~g~~p~-~~~~~~l~~~--~~~~g~~~~A~~~~~ 602 (693)
++|++.+++..+ +.|+ ...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH--HSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999998 4664 3555555555 888899999999998
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.89 E-value=1.9e-05 Score=76.74 Aligned_cols=109 Identities=8% Similarity=-0.136 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh------------------hHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 579 ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQL------------------EHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 579 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
..+..+...+.+.|++++|+..|+++... .|+. ..|..+..+|.+.|++++|+..+++.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45677788999999999999999998752 3443 27888999999999999999999987
Q ss_pred C--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhcc
Q 043637 641 P--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRF 690 (693)
Q Consensus 641 ~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y 690 (693)
. .+.+...+..+..+|...|++++|...++++++++|+++..+..|+.+.
T Consensus 257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 5 4567788999999999999999999999999999999999998888764
No 188
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.84 E-value=3e-05 Score=58.27 Aligned_cols=78 Identities=13% Similarity=0.011 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhccc
Q 043637 614 LEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 614 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
...+..+...+.+.|++++|+..+++.. .+.+...+..+...+...|++++|...++++++++|+++.++..++.+|.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3455666666777777777777776653 34456677778888888888888888888888888888888888887764
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.83 E-value=3.5e-05 Score=75.64 Aligned_cols=120 Identities=5% Similarity=-0.127 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHC--------------CCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 043637 543 VIICNSMILGFCHNERGREALEVFGLMKKE--------------GIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCK 607 (693)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--------------g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (693)
...+..+...+.+.|++++|++.|++..+. ...| +...|..+..+|.+.|++++|+..++++.+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE- 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH-
Confidence 345667777778888888888888877761 0122 123444445555555555555555555542
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccH
Q 043637 608 YGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATL 664 (693)
Q Consensus 608 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 664 (693)
-.+.+...+..+..+|.+.|++++|+..|++.. .+.+...+..+...+...++.++
T Consensus 302 -~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 302 -IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp -TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred -hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 112234444455555555555555555555442 22333344444444444443333
No 190
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.83 E-value=1.8e-06 Score=82.95 Aligned_cols=455 Identities=12% Similarity=0.111 Sum_probs=222.0
Q ss_pred CCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhh
Q 043637 75 PPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSA 154 (693)
Q Consensus 75 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 154 (693)
..+.+|+.|.+++...|++.+|++-|- +..|+..|..+|.+..+.|.+++-+..+...++..- ++..=+.|+-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 356788889999998898888888764 455777888999999999999999998887777633 3344457788888
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHH
Q 043637 155 EELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFK 234 (693)
Q Consensus 155 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 234 (693)
+.+++.+..+++. .||..-...+.+-|...|.++.|.-+|..+.. |.-|...+.+.|++..|++.-++
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887766544432 45655556666777777777777777666542 11122222233333333222111
Q ss_pred HHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCC---CCCch
Q 043637 235 MLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPD---ERNII 311 (693)
Q Consensus 235 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~ 311 (693)
.-+..||..+-.+|...+++..|...--.++-.. .-...++..|-..|.+++-+.+++... +....
T Consensus 196 ------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglglErAHmG 264 (624)
T 3lvg_A 196 ------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGLERAHMG 264 (624)
T ss_dssp ------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHH
T ss_pred ------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHH
Confidence 1122344444444444444433332222211110 001122333444444444444444322 12333
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC-----------CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHH
Q 043637 312 SWTSIVSGYAISGRIREARELFNEMPE-----------RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLG 380 (693)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 380 (693)
+++.|.-.|++- +.++..+-++.... .....|.-++-.|..-.+++.|...+- +. .|+.+.-.
T Consensus 265 mFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi---~h--~~~Aw~h~ 338 (624)
T 3lvg_A 265 MFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM---NH--PTDAWKEG 338 (624)
T ss_dssp HHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTT---SC--HHHHCCGG
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHH---hC--ChhhccHH
Confidence 444444444433 22233332222211 233456666666666666665543221 00 00111001
Q ss_pred HHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHH-------------HHHHHcCChHHHHHHHHhhcCCCChh-hH
Q 043637 381 LILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALL-------------DMYRKCGNLRSARIWFYQMSQRRDKV-SW 446 (693)
Q Consensus 381 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-------------~~~~~~~~~~~a~~~~~~~~~~~~~~-~~ 446 (693)
.+.....+..+.+.--+....-. .-.+...+.|+ +.+.+.|.+.-. +-+....+..|.. .=
T Consensus 339 ~Fkdii~KVaN~EiyYKAi~FYL----~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLI-kpYL~~Vq~~N~~aVN 413 (624)
T 3lvg_A 339 QFKDIITKVANVELYYRAIQFYL----EFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLV-KPYLRSVQNHNNKSVN 413 (624)
T ss_dssp GGTTTGGGCSCSHHHHHHHHHHT----TSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGG-TGGGTSCCCSCCHHHH
T ss_pred HHHHHHHHcchHHHHHHHHHHHH----HhChHHHHHHHHhccccCChHHHHHHHHhcCCchhh-HHHHHHHHHhhHHHHH
Confidence 11111111122111111111111 11111122232 233333444333 2122222222222 22
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhC
Q 043637 447 NAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCC 526 (693)
Q Consensus 447 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 526 (693)
.++-..|....+++.- ..-+..|-.-.....|.++ .++ .-......-...|.+.+
T Consensus 414 eAln~L~IEEEDy~~L------------------R~SId~ydNFD~i~LA~rL----EkH---eL~eFRrIAA~LYkkn~ 468 (624)
T 3lvg_A 414 ESLNNLFITEEDYQAL------------------RTSIDAYDNFDNISLAQRL----EKH---ELIEFRRIAAYLFKGNN 468 (624)
T ss_dssp HHHHHHHHHTTCCHHH------------------HHTTSSCCCSCTTHHHHHH----HTC---SSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhhHHHH------------------HHHHHHhccccHHHHHHHH----hhC---chHHHHHHHHHHHHhcc
Confidence 3334445555544422 1122222233333333222 221 12233334455688888
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 043637 527 CLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQF 600 (693)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 600 (693)
+|+++..+.++-. .|.-.|......|+.+-|.++++-..+.| +...|...+-.|...=++|-++++
T Consensus 469 rw~qsi~l~KkDk-----lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 469 RWKQSVELCKKDS-----LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHSSCSSTTC-----CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred cHHHHHHHHHhcc-----cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 8888887765433 11222445567788888888988888865 556788888888888787777766
No 191
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.81 E-value=8.8e-05 Score=75.38 Aligned_cols=127 Identities=9% Similarity=-0.080 Sum_probs=104.7
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCC---CCC---------------HHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 043637 511 NVVCRGALVEVYTKCCCLEYAIRVFKESS---SLD---------------VIICNSMILGFCHNERGREALEVFGLMKKE 572 (693)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 572 (693)
....+..+...|.+.|++++|...|++.. +.+ ...|..+..++.+.|++++|+..+++.++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 345 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG- 345 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-
Confidence 45567788899999999999999999876 333 57899999999999999999999999999
Q ss_pred CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHH-HHHhCC
Q 043637 573 GIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELED-FVNRMP 641 (693)
Q Consensus 573 g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 641 (693)
+.|+ ...|..+..+|...|++++|+..|+++.+ -.+-+...+..+..++.+.|+.++|.. .+.+|-
T Consensus 346 -~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 346 -LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5674 67888999999999999999999999984 233356778889999999999988764 566664
No 192
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.76 E-value=0.00023 Score=58.37 Aligned_cols=120 Identities=7% Similarity=-0.103 Sum_probs=96.4
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHH
Q 043637 557 ERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCR----YGYMKE 632 (693)
Q Consensus 557 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 632 (693)
+++++|++.|++..+.| .|+.. |...|...+.+++|.+.|++..+. -++..+..|...|.. .++.++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999987 33333 667888888899999999998852 466778888888888 899999
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHh----cCCccHHHHHHHHHhhcCCCCCcchhhhh
Q 043637 633 LEDFVNRMPFNPTVPMLRKIFDKCRK----NGYATLGEWAARRLNELNPWAPFQFKITT 687 (693)
Q Consensus 633 A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 687 (693)
|..+|++.....++.....+...|.. .+|.++|...++++.+... +.+...|+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--~~A~~~l~ 136 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS--EDACGILN 136 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHC-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHh
Confidence 99999988777888888889999988 7899999999999988743 44444443
No 193
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.73 E-value=2.4e-05 Score=64.35 Aligned_cols=106 Identities=13% Similarity=0.050 Sum_probs=60.7
Q ss_pred hCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcH----------HHHHHHHHHhHHhcCCCC-ChhHHHHHHH
Q 043637 555 HNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNV----------KLALQFFDSMRCKYGIIP-QLEHYECMIK 622 (693)
Q Consensus 555 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~p-~~~~~~~l~~ 622 (693)
+.+.+++|.+.+++..+ +.| +...|..+..++...+++ ++|+..|++.++ +.| +...|..+..
T Consensus 14 r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHHHH
Confidence 44556667777766666 455 345566566666666553 355555555553 222 2344555555
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhh
Q 043637 623 LYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKIT 686 (693)
Q Consensus 623 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 686 (693)
+|...|.+ .|+.+. ..|++++|...|+++++++|+++.....+
T Consensus 89 ay~~lg~l------------~P~~~~---------a~g~~~eA~~~~~kAl~l~P~~~~y~~al 131 (158)
T 1zu2_A 89 AYTSFAFL------------TPDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHH------------CCCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHhccc------------Ccchhh---------hhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 55544432 122111 12588999999999999999876554443
No 194
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.71 E-value=0.00021 Score=60.74 Aligned_cols=95 Identities=7% Similarity=-0.077 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHC-------CC---------CCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKE-------GI---------KPD-HITFHGILLACIHEGNVKLALQFFDSMRCK 607 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~-------g~---------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (693)
.+......+.+.|++++|+..|.+..+. +- .|. ...|..+..+|.+.|++++|+..++++.+
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~- 91 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK- 91 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-
Confidence 4455566666667777777766666652 00 232 25677777888888888888888888875
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 608 YGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 608 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
-.+.+...|..+..+|...|++++|+..|++..
T Consensus 92 -~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 92 -REETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp -HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 234456777888888888888888888887764
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.70 E-value=6.7e-05 Score=58.84 Aligned_cols=92 Identities=8% Similarity=-0.001 Sum_probs=63.0
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-------HHh
Q 043637 577 DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-FNPT-------VPM 648 (693)
Q Consensus 577 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-------~~~ 648 (693)
+...+..+...+...|++++|+..++++.+ -.+.+...+..+..+|.+.|++++|+..+++.. ..|+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 455677777888888888888888888875 233456777778888888888888888887764 2333 344
Q ss_pred HHHHHHHHHhcCCccHHHHHHH
Q 043637 649 LRKIFDKCRKNGYATLGEWAAR 670 (693)
Q Consensus 649 ~~~l~~~~~~~g~~~~A~~~~~ 670 (693)
+..+..++...|+.+.|...++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHH
Confidence 5555666666666666554443
No 196
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.70 E-value=7e-05 Score=59.51 Aligned_cols=63 Identities=11% Similarity=-0.031 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 043637 543 VIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCK 607 (693)
Q Consensus 543 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 607 (693)
...+..+..++...|++++|+..|++..+ ..|+ ...+..+..++...|++++|+..+++..+.
T Consensus 27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 27 AECYLGLGSTFRTLGEYRKAEAVLANGVK--QFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44677788888999999999999999988 5664 577888888999999999999999988764
No 197
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.67 E-value=0.00024 Score=69.68 Aligned_cols=140 Identities=8% Similarity=-0.099 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhC
Q 043637 477 KFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHN 556 (693)
Q Consensus 477 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 556 (693)
...+..+...+.+.|++++|...+++..+.... . ......+++ ....+.+...|..+..++.+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~--~----------~~~~~~~~~----~~~~~~~~~~~~nla~~~~~~ 286 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG--S----------RAAAEDADG----AKLQPVALSCVLNIGACKLKM 286 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--H----------HHHSCHHHH----GGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc--C----------ccccChHHH----HHHHHHHHHHHHHHHHHHHhc
Confidence 345666666777777777777777766652100 0 000000000 011123456788899999999
Q ss_pred CChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 043637 557 ERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELED 635 (693)
Q Consensus 557 g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 635 (693)
|++++|++.+++..+ +.|+ ...|..+..+|...|++++|+..++++.+. .+.+...+..+..++.+.++.+++.+
T Consensus 287 g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 287 SDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 5674 578888889999999999999999999852 23356777788888888888887765
Q ss_pred H
Q 043637 636 F 636 (693)
Q Consensus 636 ~ 636 (693)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 3
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.65 E-value=6.6e-05 Score=58.90 Aligned_cols=95 Identities=13% Similarity=0.061 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-------
Q 043637 542 DVIICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ------- 613 (693)
Q Consensus 542 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~------- 613 (693)
+...|..+...+...|++++|++.+++..+ +.| +...+..+..++...|++++|+..++++.+ ..|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHH
Confidence 455677888889999999999999999988 456 457788888999999999999999999874 3444
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 614 LEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 614 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
...+..+..++...|+.++|+..++++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 4556677777777887777776666654
No 199
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.65 E-value=0.00021 Score=74.28 Aligned_cols=181 Identities=7% Similarity=-0.081 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCC----------HHHHHHHHhcCC---CCCHHHHHHHHHHHHhCC--C
Q 043637 494 EQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCC----------LEYAIRVFKESS---SLDVIICNSMILGFCHNE--R 558 (693)
Q Consensus 494 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g--~ 558 (693)
++|.+.++++...+++ +...|+.-..++...|+ ++++++.++.+. +.+..+|+.-...+.+.| +
T Consensus 46 eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 3444555555544333 33334433344444444 666666666655 456667777777777888 6
Q ss_pred hHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccC-cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---------
Q 043637 559 GREALEVFGLMKKEGIKP-DHITFHGILLACIHEG-NVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRY--------- 627 (693)
Q Consensus 559 ~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------- 627 (693)
++++++.++++.+ ..| |...|+.-...+...| .++++++.++++++ ..+-+...|......+.+.
T Consensus 125 ~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 125 WARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred HHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCCCccHHHHHHHHHHhhccccccccc
Confidence 6899999999988 556 4577777777777778 88888888888874 3344566676666665553
Q ss_pred -----CChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccH------------HHHHHHHHhhcCCCC
Q 043637 628 -----GYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATL------------GEWAARRLNELNPWA 679 (693)
Q Consensus 628 -----g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~------------A~~~~~~~~~~~p~~ 679 (693)
+.+++|++.++++. .+.+...|......+...+..++ |...|.+.++++|..
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 55788888887764 56677888888888877776544 334455566666643
No 200
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.65 E-value=0.00022 Score=58.85 Aligned_cols=60 Identities=15% Similarity=-0.022 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCC-------CCCh-HHH----HHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGI-------KPDH-ITF----HGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-------~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
.|..+..++.+.|++++|+..+++.++ + .|+. ..| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~--l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALH--YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 566666666666666666666666666 4 5653 455 5666666666666666666666653
No 201
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.47 E-value=0.003 Score=59.96 Aligned_cols=147 Identities=12% Similarity=-0.054 Sum_probs=97.4
Q ss_pred CCCHHHHHHHHHHHH--hCC---ChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhc---cC-----cHHHHHHHHHHhH
Q 043637 540 SLDVIICNSMILGFC--HNE---RGREALEVFGLMKKEGIKPDH-ITFHGILLACIH---EG-----NVKLALQFFDSMR 605 (693)
Q Consensus 540 ~~~~~~~~~l~~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~---~g-----~~~~A~~~~~~~~ 605 (693)
+.+...|..++++.. ..+ +..+|..+|++..+ +.|+. ..|..+..+|.. .+ ........++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 445555666555433 222 35789999999999 68874 455544444421 11 1111111222211
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchh
Q 043637 606 CKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP-FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFK 684 (693)
Q Consensus 606 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 684 (693)
.....+.++.+|..+...+.-.|++++|...++++. .+|+...|..+...+...|+.++|.+.+++++.++|..+ +|.
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~ 347 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLY 347 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHH
Confidence 111335577788888888888899999999999886 357777777778888899999999999999999999654 666
Q ss_pred hhhhc
Q 043637 685 ITTNR 689 (693)
Q Consensus 685 ~l~~~ 689 (693)
...|+
T Consensus 348 ~~~~l 352 (372)
T 3ly7_A 348 WIENG 352 (372)
T ss_dssp HHHHS
T ss_pred HHhCc
Confidence 65554
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.45 E-value=0.0005 Score=52.57 Aligned_cols=82 Identities=10% Similarity=-0.017 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 043637 541 LDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYEC 619 (693)
Q Consensus 541 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 619 (693)
.+...+..+...+...|++++|+..|++..+ +.|+ ...|..+..+|...|++++|.+.+++..+.....++......
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 3455666777777777777777777777777 4453 456666777777777777777777776642222334443333
Q ss_pred HHHHH
Q 043637 620 MIKLY 624 (693)
Q Consensus 620 l~~~~ 624 (693)
+...+
T Consensus 83 l~~~l 87 (100)
T 3ma5_A 83 LQDAK 87 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.43 E-value=0.00025 Score=55.97 Aligned_cols=77 Identities=9% Similarity=-0.120 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 043637 561 EALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNR 639 (693)
Q Consensus 561 ~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 639 (693)
.|++.|++..+ ..|+ ...+..+...+...|++++|+..++++.+. .+.+...+..+..+|.+.|++++|...|++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56777888777 4564 577777888888888888888888888752 334566777888888888888888888876
Q ss_pred CC
Q 043637 640 MP 641 (693)
Q Consensus 640 ~~ 641 (693)
..
T Consensus 79 al 80 (115)
T 2kat_A 79 GL 80 (115)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.37 E-value=0.00019 Score=54.76 Aligned_cols=88 Identities=10% Similarity=-0.055 Sum_probs=59.0
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcC
Q 043637 584 ILLACIHEGNVKLALQFFDSMRCKYGIIPQLE-HYECMIKLYCRYGYMKELEDFVNRMP--FNPTVPMLRKIFDKCRKNG 660 (693)
Q Consensus 584 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 660 (693)
....+...|++++|+..++++.+. .+.+.. .+..+..+|.+.|++++|+..|++.. .+.+...+.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 445677888888888888888752 233456 77777888888888888888887764 2233333211 4
Q ss_pred CccHHHHHHHHHhhcCCCCCc
Q 043637 661 YATLGEWAARRLNELNPWAPF 681 (693)
Q Consensus 661 ~~~~A~~~~~~~~~~~p~~~~ 681 (693)
.+.++...++++.+.+|+++.
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCSS
T ss_pred HHHHHHHHHHHHhccCccccc
Confidence 566677777777777776654
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.36 E-value=0.0011 Score=67.07 Aligned_cols=61 Identities=7% Similarity=-0.204 Sum_probs=25.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 580 TFHGILLACIHEGNVKLALQFFDSMRCKY--GIIPQ----LEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 580 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
+++.|..+|...|++++|..+++++.+-. -+.|+ ..+++.|...|...|++++|+.++++.
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444444555555555544444443200 11111 223444444555555555555444433
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.33 E-value=0.0007 Score=53.34 Aligned_cols=65 Identities=12% Similarity=0.099 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 540 SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPD-HITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 540 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
+.+...+..+...+...|++++|+..+++..+ +.|+ ...|..+..++...|++++|...+++..+
T Consensus 16 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 16 TDNMLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45667788888888999999999999999888 4564 56788888899999999999999998875
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.28 E-value=0.0058 Score=49.84 Aligned_cols=108 Identities=10% Similarity=-0.106 Sum_probs=64.2
Q ss_pred ChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhc
Q 043637 458 QSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKE 537 (693)
Q Consensus 458 ~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 537 (693)
++++|++.|++....+.|... +...|...+.++.|.+.|++..+.
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~------------------------------- 54 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL------------------------------- 54 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-------------------------------
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-------------------------------
Confidence 455666666666555544433 444455555555555555555543
Q ss_pred CCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHhHH
Q 043637 538 SSSLDVIICNSMILGFCH----NERGREALEVFGLMKKEGIKPDHITFHGILLACIH----EGNVKLALQFFDSMRC 606 (693)
Q Consensus 538 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 606 (693)
.++..+..+...|.. .++.++|.+.|++..+.| +...+..|...|.. .+++++|...+++..+
T Consensus 55 ---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 55 ---NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp ---TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 344445555555555 567777777777777654 44556666666666 6777777777777764
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.24 E-value=0.00036 Score=57.42 Aligned_cols=91 Identities=21% Similarity=0.077 Sum_probs=60.6
Q ss_pred CCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhcc
Q 043637 526 CCLEYAIRVFKESS---SLDVIICNSMILGFCHNER----------GREALEVFGLMKKEGIKPD-HITFHGILLACIHE 591 (693)
Q Consensus 526 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~ 591 (693)
+.+++|...++... +.+...|..+..++...++ +++|+..|++.++ +.|+ ...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHh
Confidence 44555555555544 4455566666666665554 4588888888888 6775 47788888888776
Q ss_pred C-----------cHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 043637 592 G-----------NVKLALQFFDSMRCKYGIIPQLEHYECMI 621 (693)
Q Consensus 592 g-----------~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 621 (693)
| ++++|++.|+++.+ +.|+...|...+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~---l~P~~~~y~~al 131 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSL 131 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 4 78888888888874 466655554433
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.24 E-value=0.0022 Score=47.56 Aligned_cols=80 Identities=10% Similarity=0.071 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 043637 544 IICNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIK 622 (693)
Q Consensus 544 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 622 (693)
..+..+...+...|++++|+..+++..+ ..| +...+..+..++...|++++|...+++..+. .+.+...+..+..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~ 85 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 4555566666677777777777777666 334 3455666666777777777777777776642 2233445555555
Q ss_pred HHHhc
Q 043637 623 LYCRY 627 (693)
Q Consensus 623 ~~~~~ 627 (693)
++.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55443
No 210
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.23 E-value=0.0024 Score=64.62 Aligned_cols=125 Identities=7% Similarity=-0.091 Sum_probs=70.7
Q ss_pred HHHHHHhhCCCCCc----ccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHH
Q 043637 328 EARELFNEMPERNV----ISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIH 403 (693)
Q Consensus 328 ~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 403 (693)
+++++.+....++. .+++.|...|...|++++|..++++..+. ++...
T Consensus 334 ~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i----------------------------~~~~l 385 (490)
T 3n71_A 334 ECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG----------------------------YMKLY 385 (490)
T ss_dssp HHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHHS
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----------------------------HHHHc
Confidence 55555555554332 46888888999999999999998876541 11111
Q ss_pred HhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCH-HHHHH
Q 043637 404 RNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSK-FTFET 482 (693)
Q Consensus 404 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~-~~~~~ 482 (693)
....+....+++.|...|...|++++|+..+.+ |+++++.......|+. .+...
T Consensus 386 G~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~-------------------------Al~i~~~~lG~~Hp~~~~~~~~ 440 (490)
T 3n71_A 386 HHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICK-------------------------AYAILLVTHGPSHPITKDLEAM 440 (490)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------HHHHHHHHTCTTSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-------------------------HHHHHHHHhCCCChHHHHHHHH
Confidence 111222334566667777777777777544433 3444444333333332 23334
Q ss_pred HHHHhcccCChHHHHHHHHHHHH
Q 043637 483 LLAACANISSLEQGKQIHCFVIR 505 (693)
Q Consensus 483 ll~~~~~~~~~~~a~~~~~~~~~ 505 (693)
+-.++...+.++.|+.++..+++
T Consensus 441 l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 441 RMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666654
No 211
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.22 E-value=4.5e-05 Score=73.54 Aligned_cols=417 Identities=10% Similarity=0.063 Sum_probs=255.0
Q ss_pred CChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCC--CCcccHHHHHHH
Q 043637 40 VSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPE--RDGGSWNAMLGA 117 (693)
Q Consensus 40 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~ 117 (693)
-.+..++.|.++....+.+.+|.+-|-+ .-|+..|..++.+..+.|.+++-++.+.-..+ +++..=+.|+-+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3456788899999888888877655432 24677888999999999999999998876654 466667889999
Q ss_pred HHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHH
Q 043637 118 YTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDA 197 (693)
Q Consensus 118 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 197 (693)
|++.++..+-.+++ -.|+..-...+..-|...|.++.|+-+|. +..-|..|...+.+.|++..|
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys---------~isN~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYN---------NVSNFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGG---------GSCCCTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHH---------hCccHHHHHHHHHHHHHHHHH
Confidence 99999876654443 24677777788888888888888877664 334456677777888888877
Q ss_pred HHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcC-C
Q 043637 198 RRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDF-E 276 (693)
Q Consensus 198 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~ 276 (693)
.+.-+. ..++.+|-.+-.+|...+.+.-|.-.--.+.- .|| ....++..|-..|.+++...+++.-. |. .
T Consensus 190 VdaArK--Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEagl--glEr 260 (624)
T 3lvg_A 190 VDGARK--ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAAL--GLER 260 (624)
T ss_dssp TTTTTT--CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTT
T ss_pred HHHHHh--cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCc
Confidence 654333 25788999999999999998877655444432 222 23345666888999999888887655 33 3
Q ss_pred CchHHHHHHHHHHHHcCChhHHHhhhcC----CCCC-------CchhHHHHHHHHHhcCCHHHHHHHH------------
Q 043637 277 GDDVVLGSLTEMYVKCGRLEDARGLLDQ----PDER-------NIISWTSIVSGYAISGRIREARELF------------ 333 (693)
Q Consensus 277 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~------------ 333 (693)
....+++-|.-.|+|- +.++..+.++. +.-| ....|..++-.|..-..++.|....
T Consensus 261 AHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~ 339 (624)
T 3lvg_A 261 AHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQ 339 (624)
T ss_dssp CCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGG
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHH
Confidence 5677888888888876 34444443332 2222 4467999999999999999884332
Q ss_pred -hhCCC--CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCc
Q 043637 334 -NEMPE--RNVISWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSN 410 (693)
Q Consensus 334 -~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 410 (693)
.++.. .|...|...|..|....- ..--+++.-+. .+.|.. .+++.+.+.+++.....++...+. ..+
T Consensus 340 Fkdii~KVaN~EiyYKAi~FYL~e~P-~lL~DLL~vL~---prlDh~---RvV~~~~k~~~LpLIkpYL~~Vq~---~N~ 409 (624)
T 3lvg_A 340 FKDIITKVANVELYYRAIQFYLEFKP-LLLNDLLMVLS---PRLDHT---RAVNYFSKVKQLPLVKPYLRSVQN---HNN 409 (624)
T ss_dssp GTTTGGGCSCSHHHHHHHHHHTTSCC-TTSHHHHHHHC---TTCCST---TTHHHHHTTTCGGGGTGGGTSCCC---SCC
T ss_pred HHHHHHHcchHHHHHHHHHHHHHhCh-HHHHHHHHhcc---ccCChH---HHHHHHHhcCCchhhHHHHHHHHH---hhH
Confidence 11111 455555555555554321 11111111110 011110 112222333333333332222211 123
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHhhcCC------------CChhhHHH-HHHHHHhcCChHHHHHHHHHhhhCCCCCH
Q 043637 411 IFVSNALLDMYRKCGNLRSARIWFYQMSQR------------RDKVSWNA-VLTGYARRGQSEEAMTSFSEMQWETRPSK 477 (693)
Q Consensus 411 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~p~~ 477 (693)
..+-.++-+.|....+++.-...+. .-.. .+..-+.. -...|.+++++++++++.++=
T Consensus 410 ~aVNeAln~L~IEEEDy~~LR~SId-~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~KkD-------- 480 (624)
T 3lvg_A 410 KSVNESLNNLFITEEDYQALRTSID-AYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKD-------- 480 (624)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHTTS-SCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSSTT--------
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHH-HhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHhc--------
Confidence 4455566677777777665422221 1111 12222222 334566777788777654431
Q ss_pred HHHHHHHHHhcccCChHHHHHHHHHHHHhC
Q 043637 478 FTFETLLAACANISSLEQGKQIHCFVIRNC 507 (693)
Q Consensus 478 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 507 (693)
..|.-.|.....+|+.+-+.++++-.++.|
T Consensus 481 klykDAietAa~S~~~elaeeLL~yFv~~g 510 (624)
T 3lvg_A 481 SLYKDAMQYASESKDTELAEELLQWFLQEE 510 (624)
T ss_dssp CCTTGGGTTTTTCCCTTHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 112223445566788888888888777765
No 212
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.22 E-value=0.00029 Score=53.91 Aligned_cols=63 Identities=19% Similarity=0.144 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 577 DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 577 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
+...+..+..++...|++++|+..|+++.+. .+.+...|..+..+|.+.|++++|+..+++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4577888888899999999999999988853 23356678888888999999999998887763
No 213
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.13 E-value=0.00094 Score=51.36 Aligned_cols=71 Identities=13% Similarity=-0.038 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC---------CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhh
Q 043637 617 YECMIKLYCRYGYMKELEDFVNRMP---------FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITT 687 (693)
Q Consensus 617 ~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 687 (693)
...++..+.+.|+++.|..++++.. ..+....+..+..++.+.|++++|...++++++++|+++.+..++.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 3445555555555555555555432 1223446677777788888888888888888888888777766655
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.08 E-value=0.00039 Score=52.98 Aligned_cols=80 Identities=15% Similarity=0.078 Sum_probs=52.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCC-hH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHH
Q 043637 549 MILGFCHNERGREALEVFGLMKKEGIKPD-HI-TFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ-LEHYECMIKLYC 625 (693)
Q Consensus 549 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 625 (693)
....+...|++++|++.+++..+ ..|+ .. .+..+..++...|++++|.+.++++.+. .|+ ...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~------ 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL---NPDSPALQAR------ 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTSTHHHHH------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCcHHHHHH------
Confidence 45566777888888888888877 4564 45 6777778888888888888888888752 232 222211
Q ss_pred hcCChHHHHHHHHhCC
Q 043637 626 RYGYMKELEDFVNRMP 641 (693)
Q Consensus 626 ~~g~~~~A~~~~~~~~ 641 (693)
+.+.++...+++..
T Consensus 75 --~~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 75 --KMVMDILNFYNKDM 88 (99)
T ss_dssp --HHHHHHHHHHCCTT
T ss_pred --HHHHHHHHHHHHHh
Confidence 45566666665553
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.92 E-value=0.0041 Score=46.32 Aligned_cols=70 Identities=7% Similarity=-0.214 Sum_probs=45.8
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCC
Q 043637 611 IPQLEHYECMIKLYCRYGY---MKELEDFVNRMP--FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAP 680 (693)
Q Consensus 611 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 680 (693)
+.++..+..+..++...++ .++|..++++.. .+.++..+..++..+...|++++|+..++++++.+|+++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 3455666666666654443 577777777664 455556666667777777777777777777777777633
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.90 E-value=0.0031 Score=62.64 Aligned_cols=37 Identities=16% Similarity=0.009 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhh-----cCCCCCcchh
Q 043637 648 MLRKIFDKCRKNGYATLGEWAARRLNE-----LNPWAPFQFK 684 (693)
Q Consensus 648 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~ 684 (693)
.++.++..|..+|++++|+..++++++ +.|++|.+-.
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 455556666666666666666666655 3465554433
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.81 E-value=0.0053 Score=61.13 Aligned_cols=56 Identities=14% Similarity=0.084 Sum_probs=28.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCC---CCCC----hHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 550 ILGFCHNERGREALEVFGLMKKEG---IKPD----HITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 550 ~~~~~~~g~~~~A~~~~~~m~~~g---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
+..+...|++++|++++++..+.. +.|+ ..+++.+..+|...|++++|+.+++++.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L 356 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM 356 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 334445556666666666555421 2222 1345555555656666666666655554
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.63 E-value=0.0036 Score=50.86 Aligned_cols=72 Identities=6% Similarity=-0.216 Sum_probs=36.2
Q ss_pred CChhHHHHHHHHHHhcC---ChHHHHHHHHhCCCC--C--CHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcch
Q 043637 612 PQLEHYECMIKLYCRYG---YMKELEDFVNRMPFN--P--TVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQF 683 (693)
Q Consensus 612 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 683 (693)
++..+...+..++++++ +.++++.+|++.... | ....+-.+.-+|.+.|++++|.+.++.+++++|+|..+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 44444444455555544 333455444444211 1 122333455555666666666666666666666665443
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.46 E-value=0.13 Score=49.02 Aligned_cols=150 Identities=7% Similarity=-0.070 Sum_probs=94.6
Q ss_pred CChhhHHHHHHHHH--hcCC---hHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHH
Q 043637 441 RDKVSWNAVLTGYA--RRGQ---SEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCR 515 (693)
Q Consensus 441 ~~~~~~~~l~~~~~--~~~~---~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 515 (693)
.+..+|...+++.. ..+. ..+|..+|++.....+-....+..+..++.. ....+.. +....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~-------------~~~~~~~-~~~~~ 257 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIV-------------RHSQHPL-DEKQL 257 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------------HHHHSCC-CHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------------HhccCCC-chhhH
Confidence 35666766665533 2222 4678888888776655555666555444430 0001100 00000
Q ss_pred HHHHHHHHhhCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc
Q 043637 516 GALVEVYTKCCCLEYAIRVFKESS--SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGN 593 (693)
Q Consensus 516 ~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 593 (693)
. ....+.+....+. +.+...|..+...+...|++++|...++++... .|+...|..+...+.-.|+
T Consensus 258 ~----------~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~ 325 (372)
T 3ly7_A 258 A----------ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGM 325 (372)
T ss_dssp H----------HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTC
T ss_pred H----------HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCC
Confidence 0 1122222222222 667778888887777789999999999999994 5887778777789999999
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHH
Q 043637 594 VKLALQFFDSMRCKYGIIPQLEHYEC 619 (693)
Q Consensus 594 ~~~A~~~~~~~~~~~~~~p~~~~~~~ 619 (693)
+++|.+.++++.. +.|...+|..
T Consensus 326 ~~eA~e~~~~Alr---L~P~~~t~~~ 348 (372)
T 3ly7_A 326 NREAADAYLTAFN---LRPGANTLYW 348 (372)
T ss_dssp HHHHHHHHHHHHH---HSCSHHHHHH
T ss_pred HHHHHHHHHHHHh---cCCCcChHHH
Confidence 9999999998874 4677776654
No 220
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.25 E-value=0.053 Score=42.21 Aligned_cols=92 Identities=9% Similarity=-0.104 Sum_probs=62.8
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH---HHHHHHhCCCCCCH----HhHHHHHHHHHhcCCccH
Q 043637 592 GNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKE---LEDFVNRMPFNPTV----PMLRKIFDKCRKNGYATL 664 (693)
Q Consensus 592 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~ 664 (693)
.....+.+.+.+.... +. |+..+-..+.+++.++.+..+ ++.++++.....++ ...-.+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3344455555555432 33 777777777888888777665 77777776533212 244456778889999999
Q ss_pred HHHHHHHHhhcCCCCCcchhh
Q 043637 665 GEWAARRLNELNPWAPFQFKI 685 (693)
Q Consensus 665 A~~~~~~~~~~~p~~~~~~~~ 685 (693)
|...++.+++.+|+|..+..+
T Consensus 93 A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999988776544
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.23 E-value=0.32 Score=53.43 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=91.8
Q ss_pred HhcCChHHHHH-HHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHH
Q 043637 454 ARRGQSEEAMT-SFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAI 532 (693)
Q Consensus 454 ~~~~~~~~a~~-~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 532 (693)
...+++++|.+ ++..+ |+......++..+.+.|..+.|.++.+.- ..-.......|++++|+
T Consensus 610 ~~~~~~~~a~~~~l~~i-----~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV-----EGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLAR 672 (814)
T ss_dssp HHTTCHHHHHHHTGGGC-----CCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHhcC-----CchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHH
Confidence 34566666655 33211 11122255555666666666666544211 11133456778999998
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 043637 533 RVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIP 612 (693)
Q Consensus 533 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 612 (693)
++.+.+ .+...|..+...+.+.|+++.|++.|.++.+ |..+...+...|+.+...++-+..... |.
T Consensus 673 ~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~~-- 738 (814)
T 3mkq_A 673 DLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-GK-- 738 (814)
T ss_dssp HHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-TC--
T ss_pred HHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-Cc--
Confidence 888766 4567889999999999999999999988755 334444445566666655555444431 21
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 613 QLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 613 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
+.....+|.+.|++++|++++.++.
T Consensus 739 ----~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 739 ----FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp ----HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred ----hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2333445666677777777766664
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.38 Score=40.15 Aligned_cols=129 Identities=12% Similarity=0.094 Sum_probs=81.0
Q ss_pred HHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHH
Q 043637 520 EVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQ 599 (693)
Q Consensus 520 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 599 (693)
+.....|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445667777777776655 4566788888888888888888888877554 3444455556677666655
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHH
Q 043637 600 FFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRL 672 (693)
Q Consensus 600 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 672 (693)
+-+....+ | -++.....+.-.|++++++++|.+...-|. -.......|-.+.|.+..+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~e------A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPL------AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHH------HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHH------HHHHHHHcCcHHHHHHHHHHh
Confidence 55544431 2 134455667778888888888877752111 112223456666777766654
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.12 E-value=0.06 Score=39.91 Aligned_cols=65 Identities=6% Similarity=-0.047 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 540 SLDVIICNSMILGFCHNER---GREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 540 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
+.++..+..+..++...++ .++|..++++..+ +.|+. .....+...+.+.|++++|+..|+++.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3456667777777765544 6889999999888 67754 6666777888899999999999999875
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.02 E-value=0.15 Score=56.07 Aligned_cols=123 Identities=12% Similarity=0.135 Sum_probs=67.7
Q ss_pred HHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHH
Q 043637 283 GSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALD 362 (693)
Q Consensus 283 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 362 (693)
..++..+.+.|..++|..+.+.. ..-.......|+++.|.++.+.+. +...|..+...+.+.++++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHH
Confidence 45555666667777666655421 111233456677777777766653 45677777777777888888877
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHhcccchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHH
Q 043637 363 FVFLMRKTTKDIDQVTLGLILNVCAGLSEIKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSA 430 (693)
Q Consensus 363 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 430 (693)
.|.++.. |..+...+...++.+...++-+.....| -++.-..+|.+.|++++|
T Consensus 703 ~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a 755 (814)
T 3mkq_A 703 AFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGA 755 (814)
T ss_dssp HHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHH
T ss_pred HHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHH
Confidence 7776642 2333334444454444444433333332 122233344455555555
No 225
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.84 E-value=0.028 Score=55.81 Aligned_cols=62 Identities=6% Similarity=-0.173 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH-----CC-CCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKK-----EG-IKPDH-ITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
+++.+..+|...|++++|+.++++..+ .| -.|+. .+++.|...|..+|++++|..+++++.+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 566677777777777777777766554 11 23333 5677777777777777777777777653
No 226
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.81 E-value=0.21 Score=38.87 Aligned_cols=57 Identities=11% Similarity=0.001 Sum_probs=26.5
Q ss_pred HHHHHHhhCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 043637 518 LVEVYTKCCCLEYAIRVFKESS---SLDVIICNSMILGFCHNERGREALEVFGLMKKEGI 574 (693)
Q Consensus 518 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 574 (693)
-++.+...|+-++-.+++.++. +|++...-.+..+|.+.|+..+|.+++.+..+.|+
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3344444444444444444421 33444444445555555555555555555555443
No 227
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.69 E-value=0.063 Score=53.38 Aligned_cols=88 Identities=10% Similarity=-0.002 Sum_probs=57.7
Q ss_pred HHHHHhhCCHHHHHHHHhcCC--------CCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHHC-----C-CCCCh-HH
Q 043637 519 VEVYTKCCCLEYAIRVFKESS--------SLD---VIICNSMILGFCHNERGREALEVFGLMKKE-----G-IKPDH-IT 580 (693)
Q Consensus 519 ~~~~~~~~~~~~A~~~~~~~~--------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~-~~ 580 (693)
+..+.+.|++++|+.++++.. +.+ ..+++.++.+|...|++++|+.++++.++- | -.|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445566778888877776432 112 236777778888888888888888776641 1 22332 55
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 581 FHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
++.|...|...|++++|..+++++.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777777777777777777776653
No 228
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.40 E-value=3.8 Score=44.39 Aligned_cols=248 Identities=10% Similarity=-0.054 Sum_probs=130.6
Q ss_pred HHHHcCChHHHHHHHHhhcCC---CChh--hHHHHHHHHHhcCChHHHHHHHHHhhhCCC--------CCHH--HHHHHH
Q 043637 420 MYRKCGNLRSARIWFYQMSQR---RDKV--SWNAVLTGYARRGQSEEAMTSFSEMQWETR--------PSKF--TFETLL 484 (693)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~---~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------p~~~--~~~~ll 484 (693)
+....|+.++++..+.+.+.. .+.. .-..+.-+....|..+++.+++........ +... ....|.
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 345667888888888887763 2222 223344456667776778877776543221 1111 122333
Q ss_pred HHhcccCChHHHHHHHHHHHHhCCCcchhHHH--HHHHHHHhhCCHHHHHHHHhcCC-CCCHHHH--HHHHHHHHhCCCh
Q 043637 485 AACANISSLEQGKQIHCFVIRNCYEINVVCRG--ALVEVYTKCCCLEYAIRVFKESS-SLDVIIC--NSMILGFCHNERG 559 (693)
Q Consensus 485 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~--~~l~~~~~~~g~~ 559 (693)
.++.-.++ +++...+..+....-. ...... ++...+.-.|+-+-...+++.+. ..+.... -.+.-++...|+.
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 33444444 3444444444432211 111122 23334455677666666665433 2232333 3334445578888
Q ss_pred HHHHHHHHHHHHCCCCCChHHHH---HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 043637 560 REALEVFGLMKKEGIKPDHITFH---GILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDF 636 (693)
Q Consensus 560 ~~A~~~~~~m~~~g~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 636 (693)
+.+..+++.+... -.|. .-|. .+.-+|+..|+.....+++..+.. ....+..-...+.-++.-.|+.+.+.++
T Consensus 541 e~~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 541 ELADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 8888888888873 1222 2333 344678889998777778888875 3333344333444455567777767777
Q ss_pred HHhCCCCCCHHhHHHHHHHHH--hcCC-ccHHHHHHHHHh
Q 043637 637 VNRMPFNPTVPMLRKIFDKCR--KNGY-ATLGEWAARRLN 673 (693)
Q Consensus 637 ~~~~~~~~~~~~~~~l~~~~~--~~g~-~~~A~~~~~~~~ 673 (693)
++.+....++..-.....++. ..|+ ..++...++.+.
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 765553344443222222222 2333 256666666664
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.29 E-value=1.2 Score=40.66 Aligned_cols=137 Identities=11% Similarity=0.097 Sum_probs=88.5
Q ss_pred CCHHHHHHHHhcCCCCCHH--HHHHHHHH-HHhC--CC------hHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHhc-
Q 043637 526 CCLEYAIRVFKESSSLDVI--ICNSMILG-FCHN--ER------GREALEVFGLMKKEGIKPD---HITFHGILLACIH- 590 (693)
Q Consensus 526 ~~~~~A~~~~~~~~~~~~~--~~~~l~~~-~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~- 590 (693)
++..+-.+.+.+..+.++. .|...+.+ +... |+ ...|...+++..+ +.|+ -..|..+...|..
T Consensus 135 ~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~v 212 (301)
T 3u64_A 135 GDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAA 212 (301)
T ss_dssp SCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHS
T ss_pred cchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhC
Confidence 4444455556666544433 56655543 2332 33 5677888888888 7887 3578888888887
Q ss_pred ----cCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhc-CChHHHHHHHHhCC-CCCCH-HhHHHHHHHHHhcCC
Q 043637 591 ----EGNVKLALQFFDSMRCKYGIIP--QLEHYECMIKLYCRY-GYMKELEDFVNRMP-FNPTV-PMLRKIFDKCRKNGY 661 (693)
Q Consensus 591 ----~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~ 661 (693)
-|+.++|.+.|++..+ +.| +..++..+.+.+++. |+.++|.+.+++.. .+|.. |. ..+.+..++
T Consensus 213 Pp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~-~~lan~~~q--- 285 (301)
T 3u64_A 213 PESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPH-NKLLVILSQ--- 285 (301)
T ss_dssp CTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS-CHHHHHHHH---
T ss_pred CCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC-hhHHHHHHH---
Confidence 4899999999999985 344 366777788888884 99999999998875 23332 22 234444433
Q ss_pred ccHHHHHHHHH
Q 043637 662 ATLGEWAARRL 672 (693)
Q Consensus 662 ~~~A~~~~~~~ 672 (693)
.+|...++++
T Consensus 286 -~eA~~LL~~~ 295 (301)
T 3u64_A 286 -KRARWLKAHV 295 (301)
T ss_dssp -HHHHHHHHTH
T ss_pred -HHHHHHHHHh
Confidence 2455555544
No 230
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.18 E-value=4.4 Score=43.88 Aligned_cols=307 Identities=13% Similarity=0.029 Sum_probs=145.9
Q ss_pred HHHHhcCCHHHHHHHHhhCCCC--CcccH----HHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCC---H-hhHH-HHHH
Q 043637 318 SGYAISGRIREARELFNEMPER--NVISW----NAMLAGYTRSLLWKEALDFVFLMRKTTK--DID---Q-VTLG-LILN 384 (693)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~---~-~~~~-~ll~ 384 (693)
-+....|+.++++.++...... +...+ ..+.-+....|..+++..++.......- .-+ . .... .+--
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3456677777888887776541 11111 2223344555655667776666554321 000 1 1111 1111
Q ss_pred HHhcccc-hhhHHHHHHHHHHhCCCCchhHHH--HHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHH--HHHHHhcCCh
Q 043637 385 VCAGLSE-IKMGKEVHGFIHRNDYSSNIFVSN--ALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAV--LTGYARRGQS 459 (693)
Q Consensus 385 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~ 459 (693)
+....|. -+++...+..+....- ....... ++...+.-.|+.+....++.......+......+ .-++...|+.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 2222232 1234444444443221 1111111 2222333445555554444443333232232223 3344567888
Q ss_pred HHHHHHHHHhhhCCCCCHHHH--HHHHHHhcccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhc
Q 043637 460 EEAMTSFSEMQWETRPSKFTF--ETLLAACANISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKE 537 (693)
Q Consensus 460 ~~a~~~~~~~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 537 (693)
+.+..+++.+.....|....- ..+.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.++++.
T Consensus 541 e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 541 ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 888888888776543333322 244557888899888888888887642 22333333333344445665556666654
Q ss_pred CC-CCCHHHHH--HHHHHHHhCCCh-HHHHHHHHHHHHCCCCCChHHHHHHH--HHHhccC-------cHHHHHHHHHHh
Q 043637 538 SS-SLDVIICN--SMILGFCHNERG-REALEVFGLMKKEGIKPDHITFHGIL--LACIHEG-------NVKLALQFFDSM 604 (693)
Q Consensus 538 ~~-~~~~~~~~--~l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~l~--~~~~~~g-------~~~~A~~~~~~~ 604 (693)
+. ..|+.+-. .+.-+....|+. .++..++..+.. .+|..+-...+ -+..-.| ++...++.+...
T Consensus 620 L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~ 696 (963)
T 4ady_A 620 LSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSV 696 (963)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHH
Confidence 44 33444333 333444445543 677888888875 45543322222 2222222 233333433333
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCC
Q 043637 605 RCKYGIIPQLEHYECMIKLYCRYGY 629 (693)
Q Consensus 605 ~~~~~~~p~~~~~~~l~~~~~~~g~ 629 (693)
..+..-.++...-..+..+....|.
T Consensus 697 ~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 697 ITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HhcccccHHHHHHHHHHHHHHhcCC
Confidence 3211223444555556666665554
No 231
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.17 E-value=0.13 Score=41.76 Aligned_cols=80 Identities=11% Similarity=0.056 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCChHHH
Q 043637 559 GREALEVFGLMKKEGIKPDHITFHGILLACIHEG---NVKLALQFFDSMRCKYGIIP--QLEHYECMIKLYCRYGYMKEL 633 (693)
Q Consensus 559 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 633 (693)
...+.+-|.+..+.| .++..+...+.+++++++ +.++++.++++..++ . .| +.+.+..|.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 345556666665654 366777777777888877 666888888888753 2 34 355666777788888888888
Q ss_pred HHHHHhCC
Q 043637 634 EDFVNRMP 641 (693)
Q Consensus 634 ~~~~~~~~ 641 (693)
++.++.+.
T Consensus 91 ~~y~~~lL 98 (152)
T 1pc2_A 91 LKYVRGLL 98 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888775
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.91 E-value=0.15 Score=38.74 Aligned_cols=60 Identities=5% Similarity=0.042 Sum_probs=29.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcC-----CCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 581 FHGILLACIHEGNVKLALQFFDSMRCKYG-----IIPQLEHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 581 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
+..+...+...|+++.|...++.+.+... -.+...++..|..+|.+.|++++|+..++++
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 33444555555555555555555543210 1123444555555555555555555555554
No 233
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.02 E-value=0.33 Score=39.71 Aligned_cols=40 Identities=13% Similarity=0.059 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHhHHHHHH
Q 043637 615 EHYECMIKLYCRYGYMKELEDFVNRMPFNP-TVPMLRKIFD 654 (693)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~ 654 (693)
+.-..+..+|.+.|++++|+.+++.++.+. ++.+-..|..
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~Lak 163 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLAN 163 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHH
Confidence 444557788888888888888888886433 3333333333
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.94 E-value=1.8 Score=33.87 Aligned_cols=62 Identities=15% Similarity=0.099 Sum_probs=45.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 043637 613 QLEHYECMIKLYCRYGYMKELEDFVNRM-P-FNPTVPMLRKIFDKCRKNGYATLGEWAARRLNE 674 (693)
Q Consensus 613 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 674 (693)
+.+.....+..+...|+.++-.+++..+ . .+++++.+-.+..+|.+-|+..+|.+.++++=+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3445566667777888888888888873 3 456778888888888888888888887777644
No 235
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.44 E-value=0.44 Score=37.79 Aligned_cols=73 Identities=8% Similarity=-0.137 Sum_probs=39.4
Q ss_pred CCChhHHHHHHHHHHhcCChH---HHHHHHHhCC-CCC--CHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcch
Q 043637 611 IPQLEHYECMIKLYCRYGYMK---ELEDFVNRMP-FNP--TVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQF 683 (693)
Q Consensus 611 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 683 (693)
.|+..+-..+.+++.++.+.+ +++.++++.. ..| ....+-.+.-++.+.|++++|.+..+.+++.+|+|.++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 345555555555555554433 3444444442 111 122333455566677777777777777777777665543
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.83 E-value=0.73 Score=41.96 Aligned_cols=71 Identities=10% Similarity=-0.076 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCC--CC
Q 043637 544 IICNSMILGFCHN-----ERGREALEVFGLMKKEGIKPD--HITFHGILLACIHE-GNVKLALQFFDSMRCKYGII--PQ 613 (693)
Q Consensus 544 ~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~--p~ 613 (693)
..|..+...|.+. |+.++|.+.|++.++ +.|+ ..++......++.. |+.+++.+.+++... .... |+
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~-a~p~~~P~ 276 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALA-IDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH-CCGGGCSS
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc-CCCCCCCC
Confidence 3666777777774 889999999999988 6774 67777777888774 889999999998885 3444 44
Q ss_pred hhHH
Q 043637 614 LEHY 617 (693)
Q Consensus 614 ~~~~ 617 (693)
....
T Consensus 277 ~~la 280 (301)
T 3u64_A 277 NKLL 280 (301)
T ss_dssp CHHH
T ss_pred hhHH
Confidence 4433
No 237
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.80 E-value=3.7 Score=34.21 Aligned_cols=126 Identities=10% Similarity=0.099 Sum_probs=79.4
Q ss_pred ccCChHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 043637 489 NISSLEQGKQIHCFVIRNCYEINVVCRGALVEVYTKCCCLEYAIRVFKESSSLDVIICNSMILGFCHNERGREALEVFGL 568 (693)
Q Consensus 489 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 568 (693)
..|+++.|.++.+.+ -+...|..|.+...+.|+++-|.+.|......+ .+.--|...|+.+.-.++-+.
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~-----~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHSFD-----KLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH-----HHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHH-----HHHHHHHHhCCHHHHHHHHHH
Confidence 456666666665544 256677777777788888888888777665433 333344556676666655555
Q ss_pred HHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 569 MKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 569 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
....| -++.....+...|+++++.+++.+.- .-| .-+......|-.+.|.++.+++.
T Consensus 86 A~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~----r~~------eA~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 86 AQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG----SLP------LAYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT----CHH------HHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC----ChH------HHHHHHHHcCcHHHHHHHHHHhC
Confidence 55543 24555567778899999999987653 212 11122223677788888888775
No 238
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.59 E-value=6.7 Score=36.66 Aligned_cols=168 Identities=12% Similarity=0.033 Sum_probs=103.7
Q ss_pred hHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHH----HHHHHCCCCCCHHhHHHHHHHhc
Q 043637 180 LESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMF----FKMLREDIRPLNFTFANALFACS 255 (693)
Q Consensus 180 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~g~~p~~~~~~~ll~~~~ 255 (693)
+|.++..-|.+.+++++|++++-.- ...+.+.|+...|.++- +-+.+.++++|..+..-++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4455666678888999998876432 34566677776666554 55567789999888888888877
Q ss_pred CCCCcc-hhHHHHHHH----HHhc--CCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHH
Q 043637 256 FLSSPY-EGMQIHGVI----IKID--FEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIRE 328 (693)
Q Consensus 256 ~~~~~~-~a~~~~~~~----~~~g--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 328 (693)
.....+ .-..+.+.+ .+.| ..-|......+...|.+.+++.+|..-|--...++...+..++..|...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 655422 122333333 3334 345677888888999999999999888753333334566655555544443221
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043637 329 ARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMRK 369 (693)
Q Consensus 329 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 369 (693)
+ +...-. .+-.|...++...|..+++...+
T Consensus 186 ~----------dlfiaR-aVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 A----------PLYCAR-AVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp H----------HHHHHH-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred H----------HHHHHH-HHHHHHHhCCHHHHHHHHHHHHH
Confidence 1 111112 23345566777777776665543
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.59 E-value=0.33 Score=37.91 Aligned_cols=72 Identities=8% Similarity=-0.136 Sum_probs=35.7
Q ss_pred CChhHHHHHHHHHHhcCChH---HHHHHHHhCC-CCC--CHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcch
Q 043637 612 PQLEHYECMIKLYCRYGYMK---ELEDFVNRMP-FNP--TVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQF 683 (693)
Q Consensus 612 p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 683 (693)
|++.+--.+.++++++.+.+ +++.++++.. ..| ....+-.+.-++.+.|++++|.+..+.+++.+|+|..+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 34444444445555544332 3344444332 111 122333455556666666666666666666666665543
No 240
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.25 E-value=12 Score=38.81 Aligned_cols=252 Identities=9% Similarity=0.049 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCC
Q 043637 413 VSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISS 492 (693)
Q Consensus 413 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 492 (693)
.-+..+..+.+.+++..... +... ...+...-.....+....|+..+|......+-..+......+..++..+...|.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~-~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLA-FSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHH-HCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHH-hccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCC
Confidence 33445555666666666644 2222 222333334455666667777777776666655554444455555555554443
Q ss_pred hHH--HHHHHHHHHHhC-----------CCcch-hHHHHHHHHHHhhCCHHHHHHHHhcCCCCCHH---HHHHHHHHHHh
Q 043637 493 LEQ--GKQIHCFVIRNC-----------YEINV-VCRGALVEVYTKCCCLEYAIRVFKESSSLDVI---ICNSMILGFCH 555 (693)
Q Consensus 493 ~~~--a~~~~~~~~~~~-----------~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~ 555 (693)
... ..+=+..+...| +.++. .....++..+.+-. .+....... .++.. .+...+.-+.+
T Consensus 152 lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~---~~~~~~~~~-~~~~~~~~~~~~~~~rlar 227 (618)
T 1qsa_A 152 QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPN---TVLTFARTT-GATDFTRQMAAVAFASVAR 227 (618)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGG---GHHHHHHHS-CCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChH---hHHHHHhcc-CCChhhHHHHHHHHHHHHh
Confidence 221 111111111111 11111 11122222222221 222222221 12221 12222233333
Q ss_pred CCChHHHHHHHHHHHHCC-CCCCh--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 043637 556 NERGREALEVFGLMKKEG-IKPDH--ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKE 632 (693)
Q Consensus 556 ~g~~~~A~~~~~~m~~~g-~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 632 (693)
.+.+.|...+......+ +.+.. ..+..+.......+...++...+..... ..++.......++...+.|+++.
T Consensus 228 -~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 -QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp -HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHH
T ss_pred -cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHH
Confidence 37899999998886543 22222 2333344455556634566666666542 23455455666677778899999
Q ss_pred HHHHHHhCCCCC-C-HHhHHHHHHHHHhcCCccHHHHHHHHHhh
Q 043637 633 LEDFVNRMPFNP-T-VPMLRKIFDKCRKNGYATLGEWAARRLNE 674 (693)
Q Consensus 633 A~~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 674 (693)
|...|+.|...+ + ....--+..+....|+.++|...++.+.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999997432 2 22222355677788999999999999875
No 241
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.01 E-value=0.59 Score=38.24 Aligned_cols=134 Identities=5% Similarity=-0.099 Sum_probs=68.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCh-------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh-HH
Q 043637 547 NSMILGFCHNERGREALEVFGLMKKEG-IKPDH-------ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLE-HY 617 (693)
Q Consensus 547 ~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~ 617 (693)
-.-+..+...|.++.|+-+.+.+.... ..|+. .++..+.+++...|++.+|...|++.......-+... ..
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 334556666777777766666544311 12331 2445555677777777777777777643222212111 11
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCccHHHHHHHHHhhcCCCCCcchhhhhhccc
Q 043637 618 ECMIKLYCRYGYMKELEDFVNRMPFNPTVPMLRKIFDKCRKNGYATLGEWAARRLNELNPWAPFQFKITTNRFD 691 (693)
Q Consensus 618 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~y~ 691 (693)
..+. ....... -+ ....+...--.+...|.+.|+.++|...++.+-... ..|.....||++|-
T Consensus 104 ~~~~---~~ss~p~----s~---~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~-Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 104 PSTG---NSASTPQ----SQ---CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ-RTPKINMLLANLYK 166 (167)
T ss_dssp -----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG-CCHHHHHHHHHHCC
T ss_pred cccc---ccCCCcc----cc---cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh-cCHHHHHHHHHHhc
Confidence 1110 0000000 00 011223333446777788999999999887653322 36678888888874
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.00 E-value=0.66 Score=49.12 Aligned_cols=53 Identities=17% Similarity=0.064 Sum_probs=39.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHh
Q 043637 550 ILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSM 604 (693)
Q Consensus 550 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 604 (693)
..-|...|+++-|+++-++... +.|+. .+|..|..+|...|+++.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445567778888888888777 56754 77778888888888888888777765
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.96 E-value=10 Score=37.56 Aligned_cols=96 Identities=14% Similarity=0.093 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCC---hHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCCCC----h
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKE--GIKPD---HITFHGILLACIHEGNVKLALQFFDSMRCKY-GIIPQ----L 614 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~p~----~ 614 (693)
....|...+...|++.+|..++.++... |..+. ...+..-++.|...+++.+|..++.++..+. ...++ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3456778888889999999988887642 22222 1345555688999999999999998874311 22222 2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC
Q 043637 615 EHYECMIKLYCRYGYMKELEDFVNRM 640 (693)
Q Consensus 615 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 640 (693)
..+...+..+...+++.+|-+.|.+.
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34667778888899999888777655
No 244
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.90 E-value=3.2 Score=33.24 Aligned_cols=56 Identities=16% Similarity=0.038 Sum_probs=39.0
Q ss_pred CChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCch
Q 043637 122 GFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNV 178 (693)
Q Consensus 122 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 178 (693)
+++++|.++|+.+++.+-.. ...|..-.+.=.+.|++..|.+++...+..+..|..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 57777777777776543222 555555556666788899999999888887755544
No 245
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.73 E-value=1.5 Score=39.30 Aligned_cols=127 Identities=12% Similarity=0.045 Sum_probs=82.9
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 043637 551 LGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGY 629 (693)
Q Consensus 551 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 629 (693)
....+.|++++|++.+..-++. .| |...-..|+..+|-.|++++|.+-++...+ +.|+...-..+.+.++++-.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~aE~ 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQ 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHHHH
Confidence 4567889999999988888774 56 556667777999999999999999998864 34554322222222222211
Q ss_pred hHHHHHHHHhCC---C-CCCHHhHHHHHHHHH--hcCCccHHHHHHHHHhhcCCCCCcchh
Q 043637 630 MKELEDFVNRMP---F-NPTVPMLRKIFDKCR--KNGYATLGEWAARRLNELNPWAPFQFK 684 (693)
Q Consensus 630 ~~~A~~~~~~~~---~-~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~ 684 (693)
..+ ++|.--. . ....+....++.+.. ..|+.++|...-..+++.-|..+++.+
T Consensus 80 ~R~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~ 138 (273)
T 1zbp_A 80 ARK--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 138 (273)
T ss_dssp HHH--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHH--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC
Confidence 111 2332111 1 223344455555554 469999999999999999998776543
No 246
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.32 E-value=9.1 Score=35.50 Aligned_cols=167 Identities=8% Similarity=0.000 Sum_probs=101.4
Q ss_pred hHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHH----HHHHHHCCCCCCHHhHHHHHHHhc
Q 043637 180 LESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVM----FFKMLREDIRPLNFTFANALFACS 255 (693)
Q Consensus 180 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~ 255 (693)
.|.++..-|.+.+++++|++++..- ...+.+.|+...|.++ .+.+.+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4456666677888888888875432 3455667777666664 455566789999888888887776
Q ss_pred CCCCcc-hhHHHHHHHHHh----c--CCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhc---CC
Q 043637 256 FLSSPY-EGMQIHGVIIKI----D--FEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAIS---GR 325 (693)
Q Consensus 256 ~~~~~~-~a~~~~~~~~~~----g--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~---g~ 325 (693)
.....+ .-.++.+.+.+. | ...+......+...|.+.|++.+|+..|--....+...+..++.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 643222 223444444433 3 2346778888889999999999888877633333455555555555444 44
Q ss_pred HHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043637 326 IREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDFVFLMR 368 (693)
Q Consensus 326 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 368 (693)
..++- + ..-. .+-.|...++...|..+|+...
T Consensus 184 ~~e~d-l---------f~~R-aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 184 DSTVA-E---------FFSR-LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHH-H---------HHHH-HHHHHHHTTBHHHHHHHHHHHH
T ss_pred cchHH-H---------HHHH-HHHHHHHhcCHHHHHHHHHHHH
Confidence 33321 1 1111 1223445667777777776654
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.85 E-value=14 Score=36.71 Aligned_cols=253 Identities=8% Similarity=-0.021 Sum_probs=130.1
Q ss_pred CccHHHHHHHHHHHHHh-----CCCCCchhhhHHHHHHhccCChhhHHHhhccCCCC---CcccHHHHHHHH----HhCC
Q 043637 55 SKAIVEARKLESNLVTF-----YPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPER---DGGSWNAMLGAY----TQNG 122 (693)
Q Consensus 55 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~----~~~~ 122 (693)
.|++..|.+.+-.+.+. +......+...++..|...|+++...+.+..+... -..+-..+++.+ ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 36788888777666543 23334566777888888889998886665544322 122223333322 2222
Q ss_pred Chhh--HHHHHHHhhh--CC-CCC---CHhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCc-----hhhHhHHHHHhh
Q 043637 123 FPGR--TLELFLDMNH--SG-VSA---NQITYANVLRSSAEELELGVSKQLHGLIVKRGFCGN-----VILESSLVDAYG 189 (693)
Q Consensus 123 ~~~~--a~~~~~~m~~--~g-~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~l~~~~~ 189 (693)
..+. -+.+.+.... .| +.. .......|...+...|++.+|..++..+...-...+ ...+..-+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2221 1222222211 11 111 112234566677778888888888887754321121 245666677777
Q ss_pred cCCCHHHHHHHHhccCC------CC----cccHHHHHHHHHhcCCchHHHHHHHHHHHC-CCCCCHHhHHH----HHHHh
Q 043637 190 KCMVMTDARRMFDDIQN------KN----AVSWNVIVRRYLVAGNGKEAVVMFFKMLRE-DIRPLNFTFAN----ALFAC 254 (693)
Q Consensus 190 ~~g~~~~A~~~~~~~~~------~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~----ll~~~ 254 (693)
..+++..|..++..+.. ++ ..-+...+..+...+++.+|...|.+.-.. .+.-|...+.. ++.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ 268 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL 268 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 88888888777766531 11 122556666777778888887777766431 11112222211 11111
Q ss_pred cCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHc--CChhHHHhhhcCCCC
Q 043637 255 SFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKC--GRLEDARGLLDQPDE 307 (693)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~ 307 (693)
.-.+....-.++..........++...+..++.+|... .+++.+...|.....
T Consensus 269 iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 269 VLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp HHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred HhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhc
Confidence 11222222233333333333334556667777776654 345555555555443
No 248
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.95 E-value=2 Score=33.38 Aligned_cols=79 Identities=9% Similarity=-0.045 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHH---HHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCChHHHH
Q 043637 560 REALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKL---ALQFFDSMRCKYGIIP--QLEHYECMIKLYCRYGYMKELE 634 (693)
Q Consensus 560 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 634 (693)
..+.+-+.+....| .|+..+-..+.+++.++..... ++.+++.+.. ...| .......|.-++.+.|++++|+
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~--~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP--KGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444555444443 2666666667777777766555 7777777664 2223 3444556667777888888888
Q ss_pred HHHHhCC
Q 043637 635 DFVNRMP 641 (693)
Q Consensus 635 ~~~~~~~ 641 (693)
+.++.+.
T Consensus 95 ~~~~~lL 101 (126)
T 1nzn_A 95 KYVRGLL 101 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777664
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.92 E-value=1.8 Score=31.74 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 043637 559 GREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIK 622 (693)
Q Consensus 559 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 622 (693)
.=+..+-++.+....+-|++......+++|.+.+++..|.++++-++.+ +.+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 3455666777777778899999999999999999999999999988764 3444556766654
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.72 E-value=2.7 Score=40.92 Aligned_cols=72 Identities=11% Similarity=0.065 Sum_probs=57.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChhHHHH
Q 043637 546 CNSMILGFCHNERGREALEVFGLMKKEGIKP-DHITFHGILLACIHEGNVKLALQFFDSMRC----KYGIIPQLEHYEC 619 (693)
Q Consensus 546 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~~~ 619 (693)
...++..+...|++++|...+..+.. ..| +...+..++.++.+.|+..+|++.|+.+.+ +.|+.|.+.+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34567778888999999998888887 456 667888999999999999999999888643 4699998875433
No 251
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.28 E-value=8.7 Score=30.83 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=34.5
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 043637 557 ERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 557 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 606 (693)
++.++|.++|+.+.+.+-.. ...|.....--.++|+...|.+++...+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 67778888888776643233 55566666666778888888888888874
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.45 E-value=3.4 Score=30.30 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=33.3
Q ss_pred hhHHHhhhccCCCCCChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHH
Q 043637 26 LTKTISGHLKSDEPVSYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIE 85 (693)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 85 (693)
+.+.+..+...+..|++....+.|++|.|-+++..|.++++.++..- .+...+|..+++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 33444455556666666666666666666666666666666665331 122334555544
No 253
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=86.35 E-value=15 Score=31.43 Aligned_cols=80 Identities=16% Similarity=0.125 Sum_probs=38.3
Q ss_pred ChhHHHHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccHHHHHHHHHh
Q 043637 41 SYSLYAHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQ 120 (693)
Q Consensus 41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 120 (693)
+...-...+..+...|.......+.+.+ + .++..+-...+.+++..|..+....+.+.+..++...-...+.++.+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKAL-K---DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHH-c---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4444444455555444432222222222 1 34555555556666666655444444444555555555555555555
Q ss_pred CCCh
Q 043637 121 NGFP 124 (693)
Q Consensus 121 ~~~~ 124 (693)
.++.
T Consensus 103 ~~~~ 106 (201)
T 3ltj_A 103 IGDE 106 (201)
T ss_dssp HCCG
T ss_pred hCcH
Confidence 5543
No 254
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.30 E-value=14 Score=39.11 Aligned_cols=55 Identities=5% Similarity=-0.142 Sum_probs=44.1
Q ss_pred HHHhhccCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccC
Q 043637 150 LRSSAEELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQ 205 (693)
Q Consensus 150 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 205 (693)
.+.|...|+++.|+++-++..... +.+-.+|..|..+|...|+++.|+-.++.++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 345566788888888888887764 4456788999999999999999998888887
No 255
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.93 E-value=8 Score=28.23 Aligned_cols=80 Identities=8% Similarity=0.034 Sum_probs=59.4
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHH
Q 043637 156 ELELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKM 235 (693)
Q Consensus 156 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 235 (693)
....++|.-+-+.+...|- ...+--.-+..+...|++++|..+.+...-||...|-.|-. .+.|-..++..-+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3456778888777777663 33333444566788999999999999999999999887765 4567777777777777
Q ss_pred HHCC
Q 043637 236 LRED 239 (693)
Q Consensus 236 ~~~g 239 (693)
...|
T Consensus 96 a~sg 99 (116)
T 2p58_C 96 ARSQ 99 (116)
T ss_dssp TTCC
T ss_pred HhCC
Confidence 6665
No 256
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.24 E-value=7.5 Score=28.31 Aligned_cols=86 Identities=8% Similarity=-0.027 Sum_probs=62.2
Q ss_pred CChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHH
Q 043637 157 LELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKML 236 (693)
Q Consensus 157 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 236 (693)
...++|.-+-+.+...|- ...+--.-+..+...|++++|..+.+...-||...|-.|-. .+.|-.+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 456778878777777663 33333444566788999999999999999999999887765 46788888888777887
Q ss_pred HCCCCCCHHhH
Q 043637 237 REDIRPLNFTF 247 (693)
Q Consensus 237 ~~g~~p~~~~~ 247 (693)
.+| .|....|
T Consensus 96 ~sg-~p~~q~F 105 (115)
T 2uwj_G 96 GSS-DPALADF 105 (115)
T ss_dssp TCS-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 765 3433333
No 257
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.13 E-value=28 Score=33.57 Aligned_cols=127 Identities=11% Similarity=-0.045 Sum_probs=55.7
Q ss_pred HHHHHHHHhcccCChHHHHHHHHHHHH-hCCCc---chhHHHHHHHHHHhh-CCHHHHHHHHhcCC-----CCCHH----
Q 043637 479 TFETLLAACANISSLEQGKQIHCFVIR-NCYEI---NVVCRGALVEVYTKC-CCLEYAIRVFKESS-----SLDVI---- 544 (693)
Q Consensus 479 ~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~---~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~-----~~~~~---- 544 (693)
....+...|...|+.++...++...+. .+.-+ .......+++.+... +..+.-.++..+.. ..-..
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666555443 11111 223344455544432 22222223322222 00111
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--h---HHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 545 ICNSMILGFCHNERGREALEVFGLMKKEGIKPD--H---ITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 545 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
.=..++..|...|++.+|.+++.++.+.=-..| . ..+..-+..|...+++.++...+....
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 111345555566666666555555544211111 1 123333355555566666665555554
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.20 E-value=26 Score=32.44 Aligned_cols=165 Identities=12% Similarity=0.150 Sum_probs=92.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHH----HHHHHHHcCCCCCHhhHHHHHHHHhccc
Q 043637 315 SIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALD----FVFLMRKTTKDIDQVTLGLILNVCAGLS 390 (693)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 390 (693)
++..-|.+.+++++|++++..- ...+.+.|++..|.+ +.+-..+.+++++..+...++..+....
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 4455555566666776665432 334556677665555 4566667788999888888887765533
Q ss_pred chh-hHHHHHHHHH----HhCC--CCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhc---CChH
Q 043637 391 EIK-MGKEVHGFIH----RNDY--SSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARR---GQSE 460 (693)
Q Consensus 391 ~~~-~a~~~~~~~~----~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~ 460 (693)
..+ .-.++.+.++ +.|- ..+......+...|.+.|++.+|+..+- .....+...+..++.-+... |...
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~~~~~ 185 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDDIEDS 185 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence 211 2234444444 3332 2467788888889999999999866554 22212344444444433333 3333
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHH
Q 043637 461 EAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIR 505 (693)
Q Consensus 461 ~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 505 (693)
++--.+- ..++ .|.-.++...|..+++...+
T Consensus 186 e~dlf~~-------------RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 186 TVAEFFS-------------RLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHH-------------HHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred hHHHHHH-------------HHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 3211111 1222 23346778888877776554
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.58 E-value=4.8 Score=31.34 Aligned_cols=60 Identities=18% Similarity=0.266 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 043637 561 EALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIK 622 (693)
Q Consensus 561 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 622 (693)
+..+-++.+....+-|++......+++|.+.+|+..|.++|+-++.| ..+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 45566677777778899999999999999999999999999988764 4455666776654
No 260
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.54 E-value=7.1 Score=37.98 Aligned_cols=69 Identities=10% Similarity=0.015 Sum_probs=49.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHH-----hCCCcchhHHH
Q 043637 448 AVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIR-----NCYEINVVCRG 516 (693)
Q Consensus 448 ~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 516 (693)
.++..+...|++++++..+..+....+-+...+..++.++.+.|+..+|.+.|+.+.+ .|+.|+..+-.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3455666777777777777777666566777888888888888888888887777654 57887776543
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.04 E-value=8.6 Score=30.08 Aligned_cols=43 Identities=14% Similarity=0.289 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHCCCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 561 EALEVFGLMKKEGIKPD--HITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 561 ~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
+++.+++++...+ |. ...+..|.-++.+.|++++|.+..+.+.
T Consensus 61 ~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 61 LGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4455555554432 31 2333334455555555555555555554
No 262
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.96 E-value=30 Score=39.32 Aligned_cols=161 Identities=8% Similarity=0.036 Sum_probs=73.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChH
Q 043637 415 NALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLE 494 (693)
Q Consensus 415 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 494 (693)
..++..+.+.+..+-+ ..+....+. +...--.+..++...|++++|.+.|++....-...... .....
T Consensus 816 ~~l~~~l~~~~~~~~~-~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l----------~~~~~ 883 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNAC-MQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQ----------FAVLR 883 (1139)
T ss_dssp HHHHHHHHHHSCTTHH-HHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCS----------CSSHH
T ss_pred HHHHHHHHHhhhHHHH-HHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchh----------hhhhc
Confidence 3455556666666666 333333333 22222344566777888888888887753211000000 00000
Q ss_pred HHHHHHHHHHHh--CCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC----CCC----HHHHHHHHHHHHhCCChHHHHH
Q 043637 495 QGKQIHCFVIRN--CYEINVVCRGALVEVYTKCCCLEYAIRVFKESS----SLD----VIICNSMILGFCHNERGREALE 564 (693)
Q Consensus 495 ~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~ 564 (693)
. +..+... ....-..-|..++..+.+.+.++.+.++-+... +.+ ...|..+...+...|++++|..
T Consensus 884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 0011110 001112234455555555555555544443221 111 1146666666667777777766
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhccCc
Q 043637 565 VFGLMKKEGIKPDHITFHGILLACIHEGN 593 (693)
Q Consensus 565 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 593 (693)
.+-.+.+... -...+..|+..++..|.
T Consensus 960 aL~~~pd~~~--r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 960 ALMVLSTTPL--KKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHSSS--CHHHHHHHHHHHHHHCC
T ss_pred HHHhCCCHHH--HHHHHHHHHHHHHhCCC
Confidence 6666655322 23445555554444443
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.24 E-value=7.3 Score=30.37 Aligned_cols=83 Identities=10% Similarity=0.111 Sum_probs=60.6
Q ss_pred CCCCCChhHHHHHHHHhh-cCc-cHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCC---CCCccc
Q 043637 36 SDEPVSYSLYAHLFQLCA-SSK-AIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMP---ERDGGS 110 (693)
Q Consensus 36 ~~~~~~~~~~~~ll~~~~-~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~ 110 (693)
++..-+...|..=-..+. +.. |.-+.++-++.+...+.-|++.+..+.+++|.+-+++..|.++|+.++ .+....
T Consensus 45 ~h~~Et~EeFdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~i 124 (152)
T 2y69_E 45 HGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEI 124 (152)
T ss_dssp ----CCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTH
T ss_pred CCCCCcHHHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhh
Confidence 334456666666555555 334 566788888888888999999999999999999999999999998875 234556
Q ss_pred HHHHHHHH
Q 043637 111 WNAMLGAY 118 (693)
Q Consensus 111 ~~~li~~~ 118 (693)
|..+++-+
T Consensus 125 Y~y~lqEl 132 (152)
T 2y69_E 125 YPYVIQEL 132 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777644
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.40 E-value=35 Score=38.79 Aligned_cols=161 Identities=9% Similarity=-0.052 Sum_probs=84.1
Q ss_pred hhHHHHHHhccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCCh
Q 043637 80 LNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELEL 159 (693)
Q Consensus 80 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 159 (693)
...++..+.+.|..+-|.++....++ ++..--.+..++...|++++|.+.|.+.-. |+..+.... ...
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~ 882 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVL 882 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhh
Confidence 34566777778888888887665554 333334566778899999999999977532 221111000 000
Q ss_pred HHHHHHHHHHHHhCC--CCchhhHhHHHHHhhcCCCHHHHHHHHhccC----CCCc----ccHHHHHHHHHhcCCchHHH
Q 043637 160 GVSKQLHGLIVKRGF--CGNVILESSLVDAYGKCMVMTDARRMFDDIQ----NKNA----VSWNVIVRRYLVAGNGKEAV 229 (693)
Q Consensus 160 ~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~~~~~~a~ 229 (693)
.. +..+..... ..-..-|..++..+.+.|.++.+.++-.... +.+. ..|..+.+.+...|++++|.
T Consensus 883 ~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 RE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00 011111110 1122345555566666666655554433221 1111 13666777777777777777
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHhcCCC
Q 043637 230 VMFFKMLREDIRPLNFTFANALFACSFLS 258 (693)
Q Consensus 230 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 258 (693)
..+-.+.....+ ...+..++..++..|
T Consensus 959 ~aL~~~pd~~~r--~~cLr~LV~~lce~~ 985 (1139)
T 4fhn_B 959 VALMVLSTTPLK--KSCLLDFVNQLTKQG 985 (1139)
T ss_dssp HHHHHHHHSSSC--HHHHHHHHHHHHHHC
T ss_pred HHHHhCCCHHHH--HHHHHHHHHHHHhCC
Confidence 777666554332 233444444444333
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=76.60 E-value=50 Score=30.88 Aligned_cols=165 Identities=11% Similarity=0.104 Sum_probs=90.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCCHHHHHHH----HHHHHHcCCCCCHhhHHHHHHHHhccc
Q 043637 315 SIVSGYAISGRIREARELFNEMPERNVISWNAMLAGYTRSLLWKEALDF----VFLMRKTTKDIDQVTLGLILNVCAGLS 390 (693)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~~~~~~ 390 (693)
++..-|.+.+++++|++++-.- ...+.+.|+...|.++ ++-+.+.++++|..+...++..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 4444555556666776665331 2345556665554444 466677888899888888887776554
Q ss_pred chh-hHHHHHHHHH----HhC--CCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHH
Q 043637 391 EIK-MGKEVHGFIH----RND--YSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAM 463 (693)
Q Consensus 391 ~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 463 (693)
.-+ .-..+.+.++ +.| -..+......+...|.+.+++.+|+..+. .-.++....+..++.-+...+...++-
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~e~d 187 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESHTAP 187 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGGGHH
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCccHH
Confidence 322 1223333333 333 23466777888888999999988866553 222233355555544444433322221
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHH
Q 043637 464 TSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIR 505 (693)
Q Consensus 464 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 505 (693)
-. .-..++ .|.-.++...|...++...+
T Consensus 188 lf-------------iaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 188 LY-------------CARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HH-------------HHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HH-------------HHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 11 112222 23345677777776665554
No 266
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=76.14 E-value=37 Score=29.13 Aligned_cols=146 Identities=11% Similarity=0.044 Sum_probs=57.8
Q ss_pred HHHHHHhccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHhhHHHHHHHhhccCChHH
Q 043637 82 RAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQITYANVLRSSAEELELGV 161 (693)
Q Consensus 82 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 161 (693)
..+..+++.|..+....+.+.+..++...-...+.++.+.++.+ +...+..+.. .++...-...+.++...++.+.
T Consensus 38 ~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~ 113 (211)
T 3ltm_A 38 AAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDERA 113 (211)
T ss_dssp HHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHH
Confidence 33344444443333333333333444444444444454444432 2222222222 2344444444555554444322
Q ss_pred HHHHHHHHHHhCCCCchhhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHH
Q 043637 162 SKQLHGLIVKRGFCGNVILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKML 236 (693)
Q Consensus 162 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 236 (693)
...+.+ +. -.++..+....+.++.+.|+.+....+...+..++...-...+.++.+.+. ..+...+..+.
T Consensus 114 ~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 114 VEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHHHHH-HT---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHH-HH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 222222 11 134444444445555444443333333333333444444444444444443 33444444443
No 267
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=75.17 E-value=61 Score=31.24 Aligned_cols=93 Identities=9% Similarity=0.025 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhcCC----C---ChhhHHHHHHHHHhcC-ChHHHHHHHHHhhhCCCCCHHHH----
Q 043637 413 VSNALLDMYRKCGNLRSARIWFYQMSQR----R---DKVSWNAVLTGYARRG-QSEEAMTSFSEMQWETRPSKFTF---- 480 (693)
Q Consensus 413 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~p~~~~~---- 480 (693)
....|...|.+.|+.++....+....+- + .......++..+.... ..+.-.++..+..+.......+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777775555554331 1 1223444555554432 22333333333221111111111
Q ss_pred --HHHHHHhcccCChHHHHHHHHHHHH
Q 043637 481 --ETLLAACANISSLEQGKQIHCFVIR 505 (693)
Q Consensus 481 --~~ll~~~~~~~~~~~a~~~~~~~~~ 505 (693)
.-++..|...|++.+|..++..+.+
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 1344555555666666555555554
No 268
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=73.19 E-value=44 Score=28.63 Aligned_cols=61 Identities=11% Similarity=-0.025 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 540 SLDVIICNSMILGFCHNERGREALEVFGLMKKEGIKPDHITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 540 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
.++..+-...+.++...|+. ++...+.++.+ .++...-...+.++.+.+. .++...+..+.
T Consensus 123 d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 123 DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 44554444455555555442 23333333332 3444444444455555544 33444444444
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.98 E-value=14 Score=36.58 Aligned_cols=107 Identities=13% Similarity=0.041 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH---CCCCCChHH--H
Q 043637 513 VCRGALVEVYTKCCCLEYAIRVFKESS------SLDVIICNSMILGFCHNERGREALEVFGLMKK---EGIKPDHIT--F 581 (693)
Q Consensus 513 ~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~--~ 581 (693)
.....+.+.|.+.|++++|.+.+.++. ..-...+...++.+...+++..+...+.+... .+-.|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 456678899999999999999998765 33455788888899999999999998888754 333333321 1
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 043637 582 HGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECM 620 (693)
Q Consensus 582 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 620 (693)
..-...+...+++..|...|-++...+. ......+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~-~~e~~~~~~~ 249 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFT-SIELTSYESI 249 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSC-CSCHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCC-ccchhhHHHH
Confidence 1222455677899999999988886432 3333344443
No 270
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=70.00 E-value=39 Score=26.80 Aligned_cols=56 Identities=14% Similarity=0.282 Sum_probs=25.4
Q ss_pred HHHHHHHhCCC---hHHHHHHHHHHHHCCCCC-Ch-HHHHHHHHHHhccCcHHHHHHHHHHhH
Q 043637 548 SMILGFCHNER---GREALEVFGLMKKEGIKP-DH-ITFHGILLACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 548 ~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p-~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 605 (693)
.+..++.+..+ ..+++.+++++... .| +. .....|.-++.+.|++++|.+..+.+.
T Consensus 44 ~YAw~Lv~S~~~~di~~GI~LLe~l~~~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 44 NYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHHHH--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhc--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444433 33445555555442 23 12 233333345555555555555555554
No 271
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=67.15 E-value=98 Score=30.25 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=26.4
Q ss_pred HHHhhcCccHHHHHHHHHHHHHhCCCCCchh--hhHHHHHHhccCChhhHHHhhccC
Q 043637 49 FQLCASSKAIVEARKLESNLVTFYPTPPVFL--LNRAIECYGKCGNLDDARGLFDEM 103 (693)
Q Consensus 49 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~ 103 (693)
|...+..|+.+-+.. +.+.|..++... ....+...+..|+.+-+.-+++.-
T Consensus 18 L~~Aa~~g~~~~v~~----Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g 70 (437)
T 1n11_A 18 LHVASFMGHLPIVKN----LLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK 70 (437)
T ss_dssp HHHHHHHTCHHHHHH----HHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHH----HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 344445566654443 444455444321 223445555667777777776643
No 272
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=66.63 E-value=64 Score=28.95 Aligned_cols=51 Identities=12% Similarity=0.075 Sum_probs=23.8
Q ss_pred hcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCChHHHHHHHHHHHH
Q 043637 455 RRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISSLEQGKQIHCFVIR 505 (693)
Q Consensus 455 ~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 505 (693)
+.|+.+++++....-.+..+-|...-..++..+|-.|+++.|.+-++...+
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344444554444444444344444444444444445555555444444444
No 273
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=66.27 E-value=60 Score=27.45 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=26.1
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHh
Q 043637 410 NIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEM 469 (693)
Q Consensus 410 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 469 (693)
+..+-...+.++.+.+..+.. ..+.+.+..++...-...+.++.+.|. .++...+..+
T Consensus 120 ~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~ 177 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGDERAV-EPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKL 177 (201)
T ss_dssp SHHHHHHHHHHHHHHTCGGGH-HHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHH-HHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 333444444444444443322 445555555554444444555555444 3344444443
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.62 E-value=69 Score=27.24 Aligned_cols=83 Identities=13% Similarity=-0.002 Sum_probs=54.7
Q ss_pred HHHHHHhcCC--CCCHH---HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHH
Q 043637 530 YAIRVFKESS--SLDVI---ICNSMILGFCHNERGREALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDS 603 (693)
Q Consensus 530 ~A~~~~~~~~--~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 603 (693)
.+...|.... +.|+. .|-.++..+ ..+...++..+|..|...|+--.. .-|......+...|++.+|.++++.
T Consensus 62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 62 RCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344444433 45554 333344433 244567888899999888876653 5677777888888999999999988
Q ss_pred hHHhcCCCCCh
Q 043637 604 MRCKYGIIPQL 614 (693)
Q Consensus 604 ~~~~~~~~p~~ 614 (693)
-++ .+-+|-.
T Consensus 141 GI~-~~A~P~~ 150 (202)
T 3esl_A 141 GAE-NNCRPYN 150 (202)
T ss_dssp HHH-TTCBSHH
T ss_pred HHH-cCCccHH
Confidence 886 3666643
No 275
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=63.43 E-value=75 Score=27.63 Aligned_cols=152 Identities=9% Similarity=-0.042 Sum_probs=78.5
Q ss_pred HHHhhcCccHHHHHHHHHHHHHhCCCCCchh--hhHHHHHHhccCChhhHHHhhccCCCC---CcccHHHHHHHHHhCCC
Q 043637 49 FQLCASSKAIVEARKLESNLVTFYPTPPVFL--LNRAIECYGKCGNLDDARGLFDEMPER---DGGSWNAMLGAYTQNGF 123 (693)
Q Consensus 49 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~ 123 (693)
|...+..|+.+.+..+++.+.+.+..++... ....+...+..|+.+-+..+++.-..+ +..-++. +...+..|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA-AHLACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH-HHHHHHcCC
Confidence 4445567888888888887777665544321 223455556678887777777644333 2222233 333445666
Q ss_pred hhhHHHHHHHhhhCCCCCC---HhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchh---hHhHHHHHhhcCCCHHHH
Q 043637 124 PGRTLELFLDMNHSGVSAN---QITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVI---LESSLVDAYGKCMVMTDA 197 (693)
Q Consensus 124 ~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~l~~~~~~~g~~~~A 197 (693)
.+-+..+++.....++.++ ..-.+. +...+..|+. ++++.+.+.|..++.. .-.+.+...++.|+.+-+
T Consensus 92 ~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v 166 (241)
T 1k1a_A 92 PTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQ----ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 166 (241)
T ss_dssp HHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCH----HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCH----HHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHH
Confidence 6555555554432211221 111222 2233344544 3444555566554432 223445555667777777
Q ss_pred HHHHhccCC
Q 043637 198 RRMFDDIQN 206 (693)
Q Consensus 198 ~~~~~~~~~ 206 (693)
.-+++.-..
T Consensus 167 ~~Ll~~g~~ 175 (241)
T 1k1a_A 167 QLLLQHGAN 175 (241)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHcCCC
Confidence 766665433
No 276
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=60.67 E-value=58 Score=29.29 Aligned_cols=53 Identities=9% Similarity=-0.092 Sum_probs=28.0
Q ss_pred HHHHHhhcCccHHHHHHHHHHHHHhCCCCCch---hhhHHHHHHhccCChhhHHHhhccC
Q 043637 47 HLFQLCASSKAIVEARKLESNLVTFYPTPPVF---LLNRAIECYGKCGNLDDARGLFDEM 103 (693)
Q Consensus 47 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~ 103 (693)
..+....+.|+++.+.. +.+.|..++.. .-...+...+..|+.+-+..+++.-
T Consensus 7 ~~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 62 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQ----LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62 (285)
T ss_dssp HHHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred hHHHHHHHcCCHHHHHH----HHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 34455556677654444 44455444322 1123455555677777777666653
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.33 E-value=47 Score=32.66 Aligned_cols=95 Identities=8% Similarity=-0.099 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhcccCChHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHhhCCHHHHHHHHhcCC-----CCCHHHHHH-
Q 043637 477 KFTFETLLAACANISSLEQGKQIHCFVIRN--CYEINVVCRGALVEVYTKCCCLEYAIRVFKESS-----SLDVIICNS- 548 (693)
Q Consensus 477 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~- 548 (693)
..+...+...+.+.|+++.|.+.+.++... +..--...+-.++..+...+++..+...+.++. .+|....+.
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 346777889999999999999999999983 334446677788888999999999988887754 233332222
Q ss_pred ---HHHHHHhCCChHHHHHHHHHHHH
Q 043637 549 ---MILGFCHNERGREALEVFGLMKK 571 (693)
Q Consensus 549 ---l~~~~~~~g~~~~A~~~~~~m~~ 571 (693)
-+..+...+++..|.+.|-+...
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 12234567889999888877665
No 278
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=58.66 E-value=1.2e+02 Score=28.60 Aligned_cols=112 Identities=10% Similarity=0.093 Sum_probs=64.5
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCCCCC---HHHHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCChHHHHHHHHHHh
Q 043637 515 RGALVEVYTKCCCLEYAIRVFKESSSLD---VIICNSMILGFCHNER--GREALEVFGLMKKEGIKPDHITFHGILLACI 589 (693)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 589 (693)
...++.-|...++.++|.+.++++..|. ..+...+..++-+.++ .+...+++..+...|+-+..... .++
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~----~Gf- 294 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK----RGY- 294 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH----HHH-
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHH----HHH-
Confidence 4567888888999999999999988654 2344555555555433 34567788888877655433332 233
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhH-HHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 590 HEGNVKLALQFFDSMRCKYGIIPQLEH-YECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 590 ~~g~~~~A~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
.+..+.++++.- . -|.... +..++..+...|-... .+++.++
T Consensus 295 -----~~vl~~ldDl~l--D-iP~A~~~la~~varai~~g~l~~--~f~~~~p 337 (358)
T 3eiq_C 295 -----ERIYNEIPDINL--D-VPHSYSVLERFVEECFQAGIISK--QLRDLCP 337 (358)
T ss_dssp -----HHHHHHHHHHHH--H-CTTHHHHHHHHHHHHHHHTSSCH--HHHTTCC
T ss_pred -----HHHHHhccHhhc--c-cccHHHHHHHHHHHHHHCCCCCH--HHHHhCc
Confidence 223444455542 2 354443 3344444555555443 3455554
No 279
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=56.87 E-value=55 Score=23.99 Aligned_cols=87 Identities=16% Similarity=0.113 Sum_probs=53.5
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhh
Q 043637 392 IKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQW 471 (693)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 471 (693)
.++|..|-+.+...+. ...+--.-+..+.+.|++++| -.+.+-..-||...|-.+-. .+.|-.+++...+.++..
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~A-l~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASA-LQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHH-HHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHH-HHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 3444444444444332 222222334456778999999 44444444788888876643 467777888888888888
Q ss_pred CCCCCHHHHHHH
Q 043637 472 ETRPSKFTFETL 483 (693)
Q Consensus 472 ~~~p~~~~~~~l 483 (693)
+|.|....|..=
T Consensus 98 sg~p~~q~Fa~g 109 (116)
T 2p58_C 98 SQDPRIQTFVNG 109 (116)
T ss_dssp CCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 877777666543
No 280
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=55.58 E-value=58 Score=23.84 Aligned_cols=87 Identities=10% Similarity=0.057 Sum_probs=53.3
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhh
Q 043637 392 IKMGKEVHGFIHRNDYSSNIFVSNALLDMYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQW 471 (693)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 471 (693)
.++|..|-+.+...+. ...+--.-+..+.+.|++++| -.+.+-..-||...|-.+- -.+.|-.+++...+.++..
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~A-l~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEA-LAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHH-HGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHH-HHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHh
Confidence 3444444444444332 222222334456778899999 4444444478888887664 3467888888888888888
Q ss_pred CCCCCHHHHHHH
Q 043637 472 ETRPSKFTFETL 483 (693)
Q Consensus 472 ~~~p~~~~~~~l 483 (693)
+|.|....|..=
T Consensus 97 sg~p~~q~Fa~g 108 (115)
T 2uwj_G 97 SSDPALADFAAG 108 (115)
T ss_dssp CSSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 887777666543
No 281
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=53.70 E-value=46 Score=30.36 Aligned_cols=15 Identities=13% Similarity=0.049 Sum_probs=7.4
Q ss_pred HHHHHHHcCCCCCHh
Q 043637 363 FVFLMRKTTKDIDQV 377 (693)
Q Consensus 363 ~~~~m~~~~~~p~~~ 377 (693)
+.+.+.+.|..|+..
T Consensus 210 ~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 210 MLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHTTSCBCSTTT
T ss_pred HHHHHHHcCCCCCCC
Confidence 344445556555543
No 282
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=52.79 E-value=35 Score=28.64 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHh
Q 043637 594 VKLALQFFDSMRCKYGIIPQLEHYE-----CMIKLYCRYGYMKELEDFVNR 639 (693)
Q Consensus 594 ~~~A~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~ 639 (693)
.+.|+.+|+.+... ..+-...-. ..+-.|.+.|.+++|.++|++
T Consensus 94 LESAl~v~~~I~~e--~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr 142 (211)
T 3bqo_A 94 LESALMIWGSIEKE--HDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFER 142 (211)
T ss_dssp HHHHHHHHTTSCSC--CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 56677777666532 111111111 123446666777777766666
No 283
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=50.48 E-value=26 Score=31.29 Aligned_cols=89 Identities=8% Similarity=-0.061 Sum_probs=41.1
Q ss_pred HHhCCChhhHHHHHHHhhhCCCCCCHh-------hHHHHHHHhh--ccCChHHHHHHHHHHHHhC---------CCCchh
Q 043637 118 YTQNGFPGRTLELFLDMNHSGVSANQI-------TYANVLRSSA--EELELGVSKQLHGLIVKRG---------FCGNVI 179 (693)
Q Consensus 118 ~~~~~~~~~a~~~~~~m~~~g~~~~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---------~~~~~~ 179 (693)
.++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+.+..+++.....+ +.....
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~ 91 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYY 91 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSE
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccccc
Confidence 345566666555665555544444422 2223333321 4566666666555543311 000000
Q ss_pred hHhHHHHHhhcCCCHHHHHHHHhccCC
Q 043637 180 LESSLVDAYGKCMVMTDARRMFDDIQN 206 (693)
Q Consensus 180 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 206 (693)
.-.+.+...+..|+.+-+.-+++.-..
T Consensus 92 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 92 RGQTALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp ESBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 112334444556777766666665443
No 284
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=49.74 E-value=1.7e+02 Score=27.61 Aligned_cols=68 Identities=10% Similarity=0.100 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCC--hHHHHHHHHHHHHhCCCcchh
Q 043637 446 WNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISS--LEQGKQIHCFVIRNCYEINVV 513 (693)
Q Consensus 446 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 513 (693)
...++.-|...|+.++|.+.++++.....-.......+..++.+.++ .+....++..+...|+-....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 46677888888899999888888853221123334445555555432 345666777777665544433
No 285
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=48.79 E-value=54 Score=28.48 Aligned_cols=21 Identities=5% Similarity=-0.036 Sum_probs=11.0
Q ss_pred HHHHHhccCChhhHHHhhccC
Q 043637 83 AIECYGKCGNLDDARGLFDEM 103 (693)
Q Consensus 83 l~~~~~~~g~~~~A~~~~~~~ 103 (693)
.+...+..|+.+-+.-+++.-
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISKG 65 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHcC
Confidence 444445556666555555443
No 286
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=48.14 E-value=70 Score=27.73 Aligned_cols=50 Identities=8% Similarity=-0.065 Sum_probs=25.9
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCchh--hHhHHHHHhhcCCCHHHHHHHHhccCC
Q 043637 153 SAEELELGVSKQLHGLIVKRGFCGNVI--LESSLVDAYGKCMVMTDARRMFDDIQN 206 (693)
Q Consensus 153 ~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 206 (693)
.+..|+.+....+ .+.|..++.. .-.+.+...++.|+.+-+.-+++.-..
T Consensus 16 A~~~g~~~~~~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 67 (240)
T 3eu9_A 16 ATQYGIYERCREL----VEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAI 67 (240)
T ss_dssp HHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHcCChHHHHHH----HHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCc
Confidence 3455665444443 4455444321 122345556667777777666665543
No 287
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=48.08 E-value=64 Score=30.60 Aligned_cols=149 Identities=12% Similarity=-0.021 Sum_probs=74.3
Q ss_pred HHHHHhhcCccHHHHHHHHHHHHHhCCCCCchh--hhHHHHHHhccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCCh
Q 043637 47 HLFQLCASSKAIVEARKLESNLVTFYPTPPVFL--LNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFP 124 (693)
Q Consensus 47 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 124 (693)
..|...+..|+.+.+..++ +.|..++... ....+...+..|+.+-+.-+++.-...+...-.+.+...+..|+.
T Consensus 22 t~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~ 97 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKT 97 (364)
T ss_dssp HHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCH
T ss_pred CHHHHHHHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCH
Confidence 3444455567775554444 4555444322 123455555678888877777765544332222233444566776
Q ss_pred hhHHHHHHHhhhCCCCCCH--------------------hhHHHHHHHhhccC--ChHHHHHHHHHHHHhCCCCchhh--
Q 043637 125 GRTLELFLDMNHSGVSANQ--------------------ITYANVLRSSAEEL--ELGVSKQLHGLIVKRGFCGNVIL-- 180 (693)
Q Consensus 125 ~~a~~~~~~m~~~g~~~~~--------------------~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~-- 180 (693)
+-+..+++.....|..++. .-.+.|. ..+..| +.+ +.+.+.+.|..++...
T Consensus 98 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~~----~v~~Ll~~ga~~~~~d~~ 172 (364)
T 3ljn_A 98 DLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALH-WCVGLGPEYLE----MIKILVQLGASPTAKDKA 172 (364)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHH-HHHHSCGGGHH----HHHHHHHHTCCTTCCCTT
T ss_pred HHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHH-HHHHcCCchHH----HHHHHHHcCCCCcccCCC
Confidence 6666666654443443332 1122222 233344 443 3344444565544321
Q ss_pred HhHHHHHhhcCCCHHHHHHHHhcc
Q 043637 181 ESSLVDAYGKCMVMTDARRMFDDI 204 (693)
Q Consensus 181 ~~~l~~~~~~~g~~~~A~~~~~~~ 204 (693)
-.+.+...+..|+.+-+..+++..
T Consensus 173 g~t~L~~A~~~g~~~~v~~Ll~~g 196 (364)
T 3ljn_A 173 DETPLMRAMEFRNREALDLMMDTV 196 (364)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcc
Confidence 123344455667777777776653
No 288
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=43.50 E-value=2e+02 Score=26.51 Aligned_cols=68 Identities=10% Similarity=0.108 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHhcccCC--hHHHHHHHHHHHHhCCCcchh
Q 043637 446 WNAVLTGYARRGQSEEAMTSFSEMQWETRPSKFTFETLLAACANISS--LEQGKQIHCFVIRNCYEINVV 513 (693)
Q Consensus 446 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 513 (693)
...++.-|...|+.++|.+.++++.....-.......+..++.+.++ .+....++..+.+.|+-+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 45678888888999999999988853221112344455555555433 455667777777666554433
No 289
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=43.11 E-value=83 Score=26.36 Aligned_cols=58 Identities=3% Similarity=0.055 Sum_probs=27.1
Q ss_pred HHhhcCCCHHHHHHHHhcc-CC---CCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC
Q 043637 186 DAYGKCMVMTDARRMFDDI-QN---KNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPL 243 (693)
Q Consensus 186 ~~~~~~g~~~~A~~~~~~~-~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 243 (693)
...++.|+.+-+..+++.- .. ++..-++.+..+.........-.++.+.+.+.|..++
T Consensus 111 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 111 IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence 3445566666666666554 21 2222233333333222223333555555666665554
No 290
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=42.91 E-value=1.4e+02 Score=25.81 Aligned_cols=205 Identities=12% Similarity=0.023 Sum_probs=96.4
Q ss_pred HHhhcCccHHHHHHHHHHHHHhCCCCCchh--hhHHHHHHhccCChhhHHHhhccCCCC---CcccHHHHHHHHHhCCCh
Q 043637 50 QLCASSKAIVEARKLESNLVTFYPTPPVFL--LNRAIECYGKCGNLDDARGLFDEMPER---DGGSWNAMLGAYTQNGFP 124 (693)
Q Consensus 50 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~ 124 (693)
...+..|+.+ +++.+.+.|..++... ....+...+..|+.+-+..+++.-..+ +....+.+ ...+..|+.
T Consensus 16 ~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~ 90 (237)
T 3b7b_A 16 HAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCL-HLAAKKGHY 90 (237)
T ss_dssp HHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHH-HHHHHTTCH
T ss_pred HHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHH-HHHHHcCCH
Confidence 3344456654 4445555565444321 123455555678888777777653322 22222333 333445554
Q ss_pred hhHHHHHHHhhhCC-CCCC---HhhHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchh--hHhHHHHHhhcCCCHHHHH
Q 043637 125 GRTLELFLDMNHSG-VSAN---QITYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVI--LESSLVDAYGKCMVMTDAR 198 (693)
Q Consensus 125 ~~a~~~~~~m~~~g-~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~g~~~~A~ 198 (693)
+ +++.+.+.| ..++ ..-.+. +...+..|+.+ +++.+.+.|..++.. .-.+.+...++.|+.+-+.
T Consensus 91 ~----~~~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 161 (237)
T 3b7b_A 91 E----VVQYLLSNGQMDVNCQDDGGWTP-MIWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE 161 (237)
T ss_dssp H----HHHHHHTTTCCCTTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred H----HHHHHHhCCCCCcccCCCCCCCH-HHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHH
Confidence 3 333344443 2222 111222 23333445544 444555566554432 1223444555667777777
Q ss_pred HHHhccCCCCccc--HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH--hHHHHHHHhcCCCCcchhHHHHHHHHH
Q 043637 199 RMFDDIQNKNAVS--WNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNF--TFANALFACSFLSSPYEGMQIHGVIIK 272 (693)
Q Consensus 199 ~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~ 272 (693)
-+++.-..++... -.+.+...++.|+.+ +.+.+.+.|..++.. .-.+.+......|+...+.++.+.+.+
T Consensus 162 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 162 ILLAAKCDLHAVNIHGDSPLHIAARENRYD----CVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHTTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCcCCCCCCHHHHHHHhCCHh----HHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7766544332221 112334444556544 333444556555432 122344555666666666666665543
No 291
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=42.80 E-value=2.4e+02 Score=27.30 Aligned_cols=148 Identities=10% Similarity=0.068 Sum_probs=72.7
Q ss_pred HHHHHhccCChhhHHHhhccCCCCCcc--cHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHh--hHHHHHHHhhccCC
Q 043637 83 AIECYGKCGNLDDARGLFDEMPERDGG--SWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQI--TYANVLRSSAEELE 158 (693)
Q Consensus 83 l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~ll~~~~~~~~ 158 (693)
.+..-+..|+.+-+..+++.-..++.. ...+.+...+..|+.+-+.-++ +.|..++.. .-...+...+..|+
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~g~ 92 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHCAARIGH 92 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHHHCCC
Confidence 455556678888888888764433221 1122344445566655444443 334333221 11123344445666
Q ss_pred hHHHHHHHHHHHHhCCCCchh--hHhHHHHHhhcCCCHHHHHHHHhccCCCCc---ccHHHHHHHHHhcCCchHHHHHHH
Q 043637 159 LGVSKQLHGLIVKRGFCGNVI--LESSLVDAYGKCMVMTDARRMFDDIQNKNA---VSWNVIVRRYLVAGNGKEAVVMFF 233 (693)
Q Consensus 159 ~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~ 233 (693)
.+- .+.+.+.|..++.. .-.+.+...++.|+.+.+..+++.-...+. ..+ +.+...+..|+.+ +++
T Consensus 93 ~~~----v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~-t~L~~A~~~g~~~----~v~ 163 (437)
T 1n11_A 93 TNM----VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGF-TPLHVAAKYGKVR----VAE 163 (437)
T ss_dssp HHH----HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSC-CHHHHHHHTTCHH----HHH
T ss_pred HHH----HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCC-CHHHHHHHcCCHH----HHH
Confidence 554 44445556554432 122344555677888888877776443221 112 2334445556644 333
Q ss_pred HHHHCCCCCC
Q 043637 234 KMLREDIRPL 243 (693)
Q Consensus 234 ~m~~~g~~p~ 243 (693)
.+.+.|..|+
T Consensus 164 ~Ll~~g~~~~ 173 (437)
T 1n11_A 164 LLLERDAHPN 173 (437)
T ss_dssp HHHHTTCCTT
T ss_pred HHHhCCCCCC
Confidence 4444555443
No 292
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.74 E-value=50 Score=33.05 Aligned_cols=25 Identities=12% Similarity=0.416 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 617 YECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 617 ~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
++.+++.|...+.++.|..++.+..
T Consensus 234 ~nllLRnYL~~~~y~qA~~lvsk~~ 258 (523)
T 4b4t_S 234 INLILRDFLNNGEVDSASDFISKLE 258 (523)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHHHC
T ss_pred HHHHHHHHHccCcHHHHHHHHhcCc
Confidence 3444444444444444444444443
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=42.66 E-value=82 Score=27.72 Aligned_cols=86 Identities=12% Similarity=0.095 Sum_probs=42.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHH--CCCCC----ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 043637 550 ILGFCHNERGREALEVFGLMKK--EGIKP----DHITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKL 623 (693)
Q Consensus 550 ~~~~~~~g~~~~A~~~~~~m~~--~g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 623 (693)
+..+....++++|..++++..+ .++++ +.......+..-.....-.-+..+.+++. . .+++......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~---~-~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL---S-SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH---T-CSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH---h-cCCHHHHHHHHHH
Confidence 4455566666666666655443 11221 11122222333333333333444444442 1 4445555666777
Q ss_pred HHhcCChHHHHHHHHh
Q 043637 624 YCRYGYMKELEDFVNR 639 (693)
Q Consensus 624 ~~~~g~~~~A~~~~~~ 639 (693)
+.+.|+.++|.++|-+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 7888888888877643
No 294
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=41.72 E-value=1.5e+02 Score=25.51 Aligned_cols=20 Identities=5% Similarity=-0.012 Sum_probs=9.8
Q ss_pred HHHhcccchhhHHHHHHHHH
Q 043637 384 NVCAGLSEIKMGKEVHGFIH 403 (693)
Q Consensus 384 ~~~~~~~~~~~a~~~~~~~~ 403 (693)
......++...+.++.+.+.
T Consensus 215 ~~A~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 215 QCASLNSQVWSALQMSKALQ 234 (237)
T ss_dssp HHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33344455555555555444
No 295
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=41.51 E-value=1.9e+02 Score=25.67 Aligned_cols=117 Identities=9% Similarity=-0.092 Sum_probs=61.6
Q ss_pred HHHHHHhccCChhhHHHhhccCCCCCcc---cHHHHHHHHHhCCChhhHHHHHHHhhhCCCCCCHh---hHHHHHHHhhc
Q 043637 82 RAIECYGKCGNLDDARGLFDEMPERDGG---SWNAMLGAYTQNGFPGRTLELFLDMNHSGVSANQI---TYANVLRSSAE 155 (693)
Q Consensus 82 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~ll~~~~~ 155 (693)
..+...++.|+.+.+..+++.-...+.. .-.+.+...+..|+.+ +++.+.+.|..++.. -.+ .+...+.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~ 81 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGAT-PFLLAAI 81 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCC-HHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCC-HHHHHHH
Confidence 3455556778888888888764433221 1123344445566654 444445555554432 122 2333344
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhh--HhHHHHHhhcCCCHHHHHHHHhccCCC
Q 043637 156 ELELGVSKQLHGLIVKRGFCGNVIL--ESSLVDAYGKCMVMTDARRMFDDIQNK 207 (693)
Q Consensus 156 ~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~ 207 (693)
.|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+++.-..+
T Consensus 82 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~ 131 (285)
T 1wdy_A 82 AGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131 (285)
T ss_dssp HTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred cCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCc
Confidence 55544 4455555665554321 123445556778888777777765543
No 296
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=41.11 E-value=1.4e+02 Score=24.03 Aligned_cols=54 Identities=11% Similarity=0.055 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh
Q 043637 560 REALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQL 614 (693)
Q Consensus 560 ~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 614 (693)
+++..+|..|...|+--.. .-|......+...|++.+|.++++.-++ .+-+|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~-~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ-NQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCccHH
Confidence 3477888888888776653 5677777788888888888888888876 3666643
No 297
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=40.01 E-value=50 Score=29.40 Aligned_cols=54 Identities=7% Similarity=-0.148 Sum_probs=29.6
Q ss_pred HHHHHhcCCchHHHHHHHHHHHCCCCCCHHh-------HHHHHHHhc--CCCCcchhHHHHHH
Q 043637 216 VRRYLVAGNGKEAVVMFFKMLREDIRPLNFT-------FANALFACS--FLSSPYEGMQIHGV 269 (693)
Q Consensus 216 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~ 269 (693)
+...++.|+.+....+++.+...|..++... .+.+..++. +.|+.+-+..+++.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 3444566777777777776666665555332 233333332 45666655555554
No 298
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=39.94 E-value=1.3e+02 Score=24.23 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCc---ccHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCCHhh
Q 043637 313 WTSIVSGYAISGRIREARELFNEMPERNV---ISWNAMLAGYTRSLL--WKEALDFVFLMRKTTKDIDQVT 378 (693)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~ 378 (693)
...++.-|...|+.++|...++++..|.- .+...+..++-+.++ .+.+..++..+...|+-+....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 34566666666777788777777765421 223333334444322 4456677777776665544433
No 299
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=38.87 E-value=1.3e+02 Score=25.90 Aligned_cols=57 Identities=14% Similarity=0.029 Sum_probs=27.0
Q ss_pred HHHhhcCCCHHHHHHHHhccCCCCccc--HHHHHHHHHhcCCchHHHHHHHHHHHCCCC
Q 043637 185 VDAYGKCMVMTDARRMFDDIQNKNAVS--WNVIVRRYLVAGNGKEAVVMFFKMLREDIR 241 (693)
Q Consensus 185 ~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 241 (693)
+...+..|+.+-+.-+++.-..++... -.+-+...+..|+.+-+..+++.+.+.|..
T Consensus 125 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~ 183 (232)
T 2rfa_A 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183 (232)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCc
Confidence 333444555555555555433222111 112334445556666665666666665543
No 300
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.36 E-value=1.4e+02 Score=23.19 Aligned_cols=62 Identities=11% Similarity=0.110 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCCCCCH---HHHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCC
Q 043637 515 RGALVEVYTKCCCLEYAIRVFKESSSLDV---IICNSMILGFCHNER--GREALEVFGLMKKEGIKP 576 (693)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~g~~p 576 (693)
...++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+....++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 45577778888899999999888875533 234445555555432 355667777777766544
No 301
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=38.32 E-value=1.3e+02 Score=25.07 Aligned_cols=89 Identities=9% Similarity=0.001 Sum_probs=38.0
Q ss_pred HHHhhcCCCHHHHHHHHhccC-C---CCcccHHHHHHHHHhcCCchHHHHHHHHHHHCC-CCCC---HHhHHHHHHHhcC
Q 043637 185 VDAYGKCMVMTDARRMFDDIQ-N---KNAVSWNVIVRRYLVAGNGKEAVVMFFKMLRED-IRPL---NFTFANALFACSF 256 (693)
Q Consensus 185 ~~~~~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~---~~~~~~ll~~~~~ 256 (693)
+...+..|+.+-+..+++... . .+..-.+. +...+..|+.+-+..++ +.| ..++ ..-.+.+..++..
T Consensus 76 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~ 150 (201)
T 3hra_A 76 YLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNA-LIPAAEKGHIDNVKLLL----EDGREDIDFQNDFGYTALIEAVGL 150 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCS-HHHHHHTTCHHHHHHHH----HHCCCCTTCCCTTSCCHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHhccCcccccccCCCCcH-HHHHHHcCCHHHHHHHH----HcCCCCcCCCCCCCCCHHHHHHHh
Confidence 334445666666666664322 1 22222222 33344566654444333 333 2222 2222333333332
Q ss_pred CCCcchhHHHHHHHHHhcCCCc
Q 043637 257 LSSPYEGMQIHGVIIKIDFEGD 278 (693)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~ 278 (693)
......-.++.+.+.+.|..++
T Consensus 151 ~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 151 REGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp SCCSHHHHHHHHHHHHTTCCTT
T ss_pred ccchhhHHHHHHHHHHCCCCCC
Confidence 2222223556666666665544
No 302
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.70 E-value=1.3e+02 Score=24.30 Aligned_cols=62 Identities=11% Similarity=0.083 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCCCCCHH---HHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCC
Q 043637 515 RGALVEVYTKCCCLEYAIRVFKESSSLDVI---ICNSMILGFCHNER--GREALEVFGLMKKEGIKP 576 (693)
Q Consensus 515 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~--~~~A~~~~~~m~~~g~~p 576 (693)
...++.-|...|+.++|.+.++++..|... +...+..++-+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 456777888889999999999888765432 44445555555433 345667777777766544
No 303
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=37.54 E-value=1.3e+02 Score=23.73 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=9.0
Q ss_pred HhhcCccHHHHHHHHHH
Q 043637 51 LCASSKAIVEARKLESN 67 (693)
Q Consensus 51 ~~~~~~~~~~a~~~~~~ 67 (693)
..+..|+.+.+..+++.
T Consensus 8 ~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 8 GAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 34445566555555554
No 304
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.34 E-value=2.1e+02 Score=25.05 Aligned_cols=23 Identities=9% Similarity=0.082 Sum_probs=15.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Q 043637 347 MLAGYTRSLLWKEALDFVFLMRK 369 (693)
Q Consensus 347 l~~~~~~~~~~~~a~~~~~~m~~ 369 (693)
-++.+....++++|..++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 35566777788888777776643
No 305
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=37.01 E-value=2.5e+02 Score=25.82 Aligned_cols=57 Identities=11% Similarity=0.049 Sum_probs=35.8
Q ss_pred HhHHHHHhhcCCCHHHHHHHHhccCCCCccc--HHHHHHHHHhcCC--chHHHHHHHHHHH
Q 043637 181 ESSLVDAYGKCMVMTDARRMFDDIQNKNAVS--WNVIVRRYLVAGN--GKEAVVMFFKMLR 237 (693)
Q Consensus 181 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~--~~~a~~~~~~m~~ 237 (693)
...++.-|...|+.++|...++++..|.... ...+|......++ -+.+-.++..+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 4578888999999999999999987665221 2223333333332 2445556677654
No 306
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=36.85 E-value=1.2e+02 Score=25.92 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=10.8
Q ss_pred HHHhccCcHHHHHHHHHHhH
Q 043637 586 LACIHEGNVKLALQFFDSMR 605 (693)
Q Consensus 586 ~~~~~~g~~~~A~~~~~~~~ 605 (693)
..|.+.|.+++|.+++++..
T Consensus 122 ~VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHhcchHHHHHHHHHHh
Confidence 34555555555555555553
No 307
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=36.26 E-value=1.1e+02 Score=21.24 Aligned_cols=63 Identities=6% Similarity=-0.043 Sum_probs=45.2
Q ss_pred HHHHHCCCCCCHHhHHHHHHHhcCCC-CcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChh
Q 043637 233 FKMLREDIRPLNFTFANALFACSFLS-SPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLE 296 (693)
Q Consensus 233 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 296 (693)
+.|.+.|++.+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|-+.
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 34667787777655 44556666554 56778889998888777777888888888888877654
No 308
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=36.18 E-value=2e+02 Score=24.43 Aligned_cols=54 Identities=13% Similarity=0.037 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHhhhCC--CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcc
Q 043637 458 QSEEAMTSFSEMQWET--RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEIN 511 (693)
Q Consensus 458 ~~~~a~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 511 (693)
...++.++|..|...+ .--..-|......+...|++.+|.++|+.-++.+-.|-
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3556677777775555 55555666666666666777777777776666655553
No 309
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=35.86 E-value=2.4e+02 Score=25.31 Aligned_cols=15 Identities=0% Similarity=-0.263 Sum_probs=6.3
Q ss_pred hhcCCCHHHHHHHHh
Q 043637 188 YGKCMVMTDARRMFD 202 (693)
Q Consensus 188 ~~~~g~~~~A~~~~~ 202 (693)
.+..|+.+-+.-+++
T Consensus 136 A~~~~~~~~v~~Ll~ 150 (285)
T 3kea_A 136 AVMLNDVSIVSYFLS 150 (285)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHh
Confidence 334444444444443
No 310
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=35.35 E-value=1.1e+02 Score=21.16 Aligned_cols=59 Identities=8% Similarity=0.075 Sum_probs=34.0
Q ss_pred HhhhCCCCCCHhhHHHHHHHhhccC-ChHHHHHHHHHHHHhCCCCchhhHhHHHHHhhcCC
Q 043637 133 DMNHSGVSANQITYANVLRSSAEEL-ELGVSKQLHGLIVKRGFCGNVILESSLVDAYGKCM 192 (693)
Q Consensus 133 ~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 192 (693)
.|.+.|+..+..- ..++..+...+ ..-.+.++.+.+.+.+...+..|....+..+...|
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3556666666543 34555555544 45667777777777665555555555555554444
No 311
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=33.62 E-value=87 Score=25.20 Aligned_cols=54 Identities=11% Similarity=-0.035 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhhCC--CCCHHHHHHHHHHhcccCChHHHHHHHHHHHHhCCCcchh
Q 043637 460 EEAMTSFSEMQWET--RPSKFTFETLLAACANISSLEQGKQIHCFVIRNCYEINVV 513 (693)
Q Consensus 460 ~~a~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 513 (693)
+++.++|..|...+ .--..-|..-...+...|++.+|.++++.-++.+-.|-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 34677777776666 5566667777777777788888888887777776666443
No 312
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=33.62 E-value=4.2e+02 Score=27.38 Aligned_cols=265 Identities=10% Similarity=-0.014 Sum_probs=122.2
Q ss_pred hhHhHHHHHhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcCCC
Q 043637 179 ILESSLVDAYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKMLREDIRPLNFTFANALFACSFLS 258 (693)
Q Consensus 179 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 258 (693)
..-..-+..+.+.+++......+.. ...+...-.....+....|+..+|......+=..|.. ....+.
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~---------- 140 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACD---------- 140 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHH----------
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHH----------
Confidence 3445555666677777777776655 3223333344556666777777676666665444321 122233
Q ss_pred CcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 043637 259 SPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIISWTSIVSGYAISGRIREARELFNEMPE 338 (693)
Q Consensus 259 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 338 (693)
.++....+.|.-....++.. +......|+...|..+...+..........++....+. ..+....... .
T Consensus 141 ------~l~~~~~~~g~lt~~~~~~R-~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p---~~~~~~~~~~-~ 209 (618)
T 1qsa_A 141 ------KLFSVWRASGKQDPLAYLER-IRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFARTT-G 209 (618)
T ss_dssp ------HHHHHHHHTTCSCHHHHHHH-HHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHHS-C
T ss_pred ------HHHHHHHHCCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhCh---HhHHHHHhcc-C
Confidence 33444443333322223322 34556667777777776665322111122222222222 1222222221 1
Q ss_pred CCcc---cHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhhHHH----HHHHHhcccchhhHHHHHHHHHHhCCCCch
Q 043637 339 RNVI---SWNAMLAGYTRSLLWKEALDFVFLMRKTTKDIDQVTLGL----ILNVCAGLSEIKMGKEVHGFIHRNDYSSNI 411 (693)
Q Consensus 339 ~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 411 (693)
++.. .+...+.-+.+ .+.+.|...+....+... .+...... +.......+....+...+....... .+.
T Consensus 210 ~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~ 285 (618)
T 1qsa_A 210 ATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QST 285 (618)
T ss_dssp CCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCH
T ss_pred CChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CCh
Confidence 1111 11111222223 366777777777765432 22222221 2222223332334444444433222 222
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHhhcCCC-C-hhhHHHHHHHHHhcCChHHHHHHHHHhh
Q 043637 412 FVSNALLDMYRKCGNLRSARIWFYQMSQRR-D-KVSWNAVLTGYARRGQSEEAMTSFSEMQ 470 (693)
Q Consensus 412 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 470 (693)
....-.+..-.+.|+++.|...+..+...+ + ....-=+..++...|+.++|..+|+.+.
T Consensus 286 ~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 286 SLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 223333333446688888866665554432 1 1112224456667788888887777764
No 313
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=33.53 E-value=2e+02 Score=23.53 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh
Q 043637 560 REALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQLE 615 (693)
Q Consensus 560 ~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 615 (693)
+.+..+|..|...|+--.. .-|......+...|++.+|.+++..-++ .+-+|...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~-~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ-QKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCcHHH
Confidence 3366788888888876653 5667777778888888888888888876 46667543
No 314
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=33.40 E-value=43 Score=28.14 Aligned_cols=46 Identities=24% Similarity=0.432 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHCCCCCCh-HHHHHHH-----HHHhccCcHHHHHHHHHHhHH
Q 043637 559 GREALEVFGLMKKEGIKPDH-ITFHGIL-----LACIHEGNVKLALQFFDSMRC 606 (693)
Q Consensus 559 ~~~A~~~~~~m~~~g~~p~~-~~~~~l~-----~~~~~~g~~~~A~~~~~~~~~ 606 (693)
.+.|+.+|+.+... .++. ..-..|+ ..|.+.|.+++|.++|++...
T Consensus 94 LESAl~v~~~I~~e--~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 94 LESALMIWGSIEKE--HDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHTTSCSC--CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 77888888887774 2322 2223333 478888999999999988653
No 315
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.37 E-value=5.3e+02 Score=28.45 Aligned_cols=53 Identities=9% Similarity=-0.035 Sum_probs=35.4
Q ss_pred HHHHHHhccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCChhhHHHHHHHhh
Q 043637 82 RAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRTLELFLDMN 135 (693)
Q Consensus 82 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 135 (693)
.++..+...|..+-|.++....+. ++..--.+.++|...|++++|.++|++.-
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 356666677777777776666664 33322346677778888888888887654
No 316
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=32.70 E-value=1.7e+02 Score=22.63 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCc---ccHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCCHhh
Q 043637 313 WTSIVSGYAISGRIREARELFNEMPERNV---ISWNAMLAGYTRSLL--WKEALDFVFLMRKTTKDIDQVT 378 (693)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~ 378 (693)
...++.-|...|+.++|...++++..|.- .....+..++-+.+. .+.+..++..+...|+-+....
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 34566667777777788888887765422 223333344444332 4566777777777665544433
No 317
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=32.25 E-value=2.5e+02 Score=24.32 Aligned_cols=53 Identities=15% Similarity=0.195 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 043637 560 REALEVFGLMKKEGIKPDH-ITFHGILLACIHEGNVKLALQFFDSMRCKYGIIPQ 613 (693)
Q Consensus 560 ~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 613 (693)
+.+..+|..|...|+--.. .-|......+...|++.+|..+|+.-++ .+-+|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~-~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR-MKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCccH
Confidence 4667788888888776653 5667777778888888888888888876 366664
No 318
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=31.34 E-value=1.7e+02 Score=27.47 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=10.1
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 043637 449 VLTGYARRGQSEEAMTSFSE 468 (693)
Q Consensus 449 l~~~~~~~~~~~~a~~~~~~ 468 (693)
++..+.+....+.+.++|.+
T Consensus 147 vl~~l~~~~g~~~l~~~~~~ 166 (339)
T 1ug3_A 147 ILGLLCKSMGPKKVGTLWRE 166 (339)
T ss_dssp HHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHH
Confidence 34444444455555555554
No 319
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=31.16 E-value=1.3e+02 Score=25.85 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=11.6
Q ss_pred HHHHhccCChhhHHHhhcc
Q 043637 84 IECYGKCGNLDDARGLFDE 102 (693)
Q Consensus 84 ~~~~~~~g~~~~A~~~~~~ 102 (693)
+...++.|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4444556777777666654
No 320
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=29.91 E-value=2.6e+02 Score=23.90 Aligned_cols=50 Identities=12% Similarity=0.044 Sum_probs=21.3
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchh--hHhHHHHHhhcCCCHHHHHHHHhc
Q 043637 154 AEELELGVSKQLHGLIVKRGFCGNVI--LESSLVDAYGKCMVMTDARRMFDD 203 (693)
Q Consensus 154 ~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~ 203 (693)
+..|+.+.+..+++.+.+.|..++.. .-.+.+...+..|+.+-+..+++.
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 68 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 34455555555555444444333221 111223333445555544444443
No 321
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=29.02 E-value=3.1e+02 Score=24.40 Aligned_cols=19 Identities=5% Similarity=-0.253 Sum_probs=8.5
Q ss_pred CCchhhHhHHHHHhhcCCC
Q 043637 175 CGNVILESSLVDAYGKCMV 193 (693)
Q Consensus 175 ~~~~~~~~~l~~~~~~~g~ 193 (693)
.++..+....+.++.+.|+
T Consensus 139 d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVIND 157 (280)
T ss_dssp CSCHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 3444554555555555444
No 322
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.68 E-value=48 Score=24.21 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=29.7
Q ss_pred CChhhHHHhhccCCCCCcccHHHHHHHHHhCCChhhH
Q 043637 91 GNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRT 127 (693)
Q Consensus 91 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 127 (693)
...+.|.++++.++.+++.+|..++.++...|....|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4688888888888888888888888888776765544
No 323
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=27.04 E-value=2.3e+02 Score=26.50 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 043637 313 WTSIVSGYAISGRIREARELFNEMPER 339 (693)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~~~~~ 339 (693)
...++.-|...|+.++|...++++..|
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 455666777777777777777777654
No 324
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=26.74 E-value=2.5e+02 Score=22.75 Aligned_cols=70 Identities=7% Similarity=-0.038 Sum_probs=49.9
Q ss_pred hHHHHHHH-HHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHh--cCCCchHHHHHHHHHHHHcCChh
Q 043637 226 KEAVVMFF-KMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKI--DFEGDDVVLGSLTEMYVKCGRLE 296 (693)
Q Consensus 226 ~~a~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~l~~~~~~~g~~~ 296 (693)
+.+++-+. .+++.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34444443 3466788876643 44566666677788899999999888 77778777777778888888655
No 325
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=26.49 E-value=3.6e+02 Score=25.15 Aligned_cols=49 Identities=8% Similarity=-0.099 Sum_probs=20.4
Q ss_pred HhhcCCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHHHHHHHHH
Q 043637 187 AYGKCMVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEAVVMFFKM 235 (693)
Q Consensus 187 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 235 (693)
..+..|+.+-+.-+++.-...+...-.+.+...+..|+.+-+..+++..
T Consensus 59 ~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 107 (364)
T 3ljn_A 59 LACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGA 107 (364)
T ss_dssp HHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhc
Confidence 3344455555555544433322211122233334455555444444443
No 326
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.74 E-value=3e+02 Score=30.45 Aligned_cols=33 Identities=3% Similarity=-0.275 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhcCCccHHHHHHHHHhh-cCCCCC
Q 043637 648 MLRKIFDKCRKNGYATLGEWAARRLNE-LNPWAP 680 (693)
Q Consensus 648 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~ 680 (693)
.|.+++..+.++|.++-+.+..+.+++ ..++|+
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 556666666666666666666666665 334433
No 327
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=25.51 E-value=2.4e+02 Score=21.95 Aligned_cols=62 Identities=3% Similarity=-0.025 Sum_probs=43.6
Q ss_pred HHHHCCCCCCHHhHHHHHHHhcCCC-CcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChh
Q 043637 234 KMLREDIRPLNFTFANALFACSFLS-SPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLE 296 (693)
Q Consensus 234 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 296 (693)
.|++.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 8 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPRVK-ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 456678777765443 444454555 67789999999988877777777777778888887665
No 328
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.26 E-value=1.4e+02 Score=23.71 Aligned_cols=62 Identities=8% Similarity=-0.107 Sum_probs=34.4
Q ss_pred HHHHCCCCCCHHhHHHHHHHhcCCCCcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChh
Q 043637 234 KMLREDIRPLNFTFANALFACSFLSSPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLE 296 (693)
Q Consensus 234 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 296 (693)
.+++.|++++..-.. ++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+.
T Consensus 12 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 12 TLKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 345566655544322 23333334445566677777666665566666666666677666543
No 329
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.19 E-value=3.8e+02 Score=26.88 Aligned_cols=27 Identities=4% Similarity=0.005 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHhcCC
Q 043637 513 VCRGALVEVYTKCCCLEYAIRVFKESS 539 (693)
Q Consensus 513 ~~~~~l~~~~~~~~~~~~A~~~~~~~~ 539 (693)
..++.++..|...+.++.|..+..+..
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~ 258 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE 258 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc
Confidence 344555555555555555555555544
No 330
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=24.92 E-value=2.6e+02 Score=22.23 Aligned_cols=63 Identities=6% Similarity=-0.027 Sum_probs=46.5
Q ss_pred HHHHHCCCCCCHHhHHHHHHHhcCCC-CcchhHHHHHHHHHhcCCCchHHHHHHHHHHHHcCChh
Q 043637 233 FKMLREDIRPLNFTFANALFACSFLS-SPYEGMQIHGVIIKIDFEGDDVVLGSLTEMYVKCGRLE 296 (693)
Q Consensus 233 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 296 (693)
+.|++.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-..++.+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 446678888776544 3455555555 67789999999988887778888777888888888765
No 331
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=24.68 E-value=3.2e+02 Score=23.16 Aligned_cols=145 Identities=10% Similarity=0.022 Sum_probs=67.6
Q ss_pred HHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCC---CcccHHHHHHHHHhCCChh
Q 043637 49 FQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPER---DGGSWNAMLGAYTQNGFPG 125 (693)
Q Consensus 49 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~ 125 (693)
+...+..|+++....+++.-.......+..-.+ .+...+..|+.+-+..+++.-..+ +..-++.|..+ +..|+.+
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~~ 87 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRT-ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA-ASAGXDE 87 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH-HHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCC-HHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHH-HHcCHHH
Confidence 445556788877777766532211112222223 444445677887777777653322 22333333333 3445543
Q ss_pred hHHHHHHHhhhCCCCCCHh---hHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhh--HhHHHHHhhcCCCHHHHHHH
Q 043637 126 RTLELFLDMNHSGVSANQI---TYANVLRSSAEELELGVSKQLHGLIVKRGFCGNVIL--ESSLVDAYGKCMVMTDARRM 200 (693)
Q Consensus 126 ~a~~~~~~m~~~g~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g~~~~A~~~ 200 (693)
+++.+.+.|..++.. -.+ .+...+..|+.+.+ +.+.+.|..++... -.+.+...+..|+.+-+..+
T Consensus 88 ----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 158 (231)
T 3aji_A 88 ----IVKALLVKGAHVNAVNQNGCT-PLHYAASKNRHEIA----VMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158 (231)
T ss_dssp ----HHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred ----HHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHH----HHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 344444455444321 122 22333344554433 34445555443321 12334444555666666666
Q ss_pred Hhcc
Q 043637 201 FDDI 204 (693)
Q Consensus 201 ~~~~ 204 (693)
++.-
T Consensus 159 l~~g 162 (231)
T 3aji_A 159 LFYK 162 (231)
T ss_dssp HHTT
T ss_pred HhcC
Confidence 5543
No 332
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=24.02 E-value=3.8e+02 Score=23.77 Aligned_cols=26 Identities=0% Similarity=-0.125 Sum_probs=11.6
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHhcC
Q 043637 432 IWFYQMSQRRDKVSWNAVLTGYARRG 457 (693)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~~ 457 (693)
..+.+.+..++...-...+.++.+.|
T Consensus 57 ~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 57 RLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 44444444444443333444444444
No 333
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.84 E-value=1.9e+02 Score=22.88 Aligned_cols=22 Identities=0% Similarity=-0.108 Sum_probs=9.0
Q ss_pred HHHhCCChhhHHHHHHHhhhCC
Q 043637 117 AYTQNGFPGRTLELFLDMNHSG 138 (693)
Q Consensus 117 ~~~~~~~~~~a~~~~~~m~~~g 138 (693)
.+...+.+-.|.++++.+.+.+
T Consensus 30 ~L~~~~~~~sa~ei~~~l~~~~ 51 (145)
T 2fe3_A 30 YLVNSMAHPTADDIYKALEGKF 51 (145)
T ss_dssp HHHHCSSCCCHHHHHHHHGGGC
T ss_pred HHHhCCCCCCHHHHHHHHHHhC
Confidence 3333333334444444444433
No 334
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=23.58 E-value=1.5e+02 Score=26.37 Aligned_cols=189 Identities=8% Similarity=-0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCC-------CHHhHHHHHHHhcC--CCCcchhHHHHHHH---------HHhc
Q 043637 213 NVIVRRYLVAGNGKEAVVMFFKMLREDIRP-------LNFTFANALFACSF--LSSPYEGMQIHGVI---------IKID 274 (693)
Q Consensus 213 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-------~~~~~~~ll~~~~~--~~~~~~a~~~~~~~---------~~~g 274 (693)
.+.+...++.|+.+....+++.....+... +..-.+.|..++.. .|+.+-+..+++.- ...+
T Consensus 14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~ 93 (273)
T 2pnn_A 14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNAS 93 (273)
T ss_dssp HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCC
T ss_pred chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcc
Q ss_pred CCCchHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchh----------------HHHHHHHHHhcCCHHHHHHHHh---h
Q 043637 275 FEGDDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIIS----------------WTSIVSGYAISGRIREARELFN---E 335 (693)
Q Consensus 275 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------------~~~li~~~~~~g~~~~A~~~~~---~ 335 (693)
.......-.+.+...+..|+.+-+..+++.....+... -.+.+...+..|+.+-+..+++ .
T Consensus 94 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 173 (273)
T 2pnn_A 94 YTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQ 173 (273)
T ss_dssp CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred cccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccC
Q ss_pred CCC---CCcccHHHHHHHHHhCCCHHHH----HHHHHHHHHcCCCCC---------HhhHHHHHHHHhcccchhhHHHHH
Q 043637 336 MPE---RNVISWNAMLAGYTRSLLWKEA----LDFVFLMRKTTKDID---------QVTLGLILNVCAGLSEIKMGKEVH 399 (693)
Q Consensus 336 ~~~---~~~~~~~~l~~~~~~~~~~~~a----~~~~~~m~~~~~~p~---------~~~~~~ll~~~~~~~~~~~a~~~~ 399 (693)
-.. .|..-.+.|..+........+- .++++.+.+.|..++ ...-.+.+...+..|+.+.+..++
T Consensus 174 gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll 253 (273)
T 2pnn_A 174 PADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL 253 (273)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHH
Q ss_pred HH
Q 043637 400 GF 401 (693)
Q Consensus 400 ~~ 401 (693)
+.
T Consensus 254 ~~ 255 (273)
T 2pnn_A 254 QR 255 (273)
T ss_dssp HH
T ss_pred HC
No 335
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=23.57 E-value=1.2e+02 Score=26.65 Aligned_cols=189 Identities=8% Similarity=-0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH------HhHHHHHHHhcCC---CCcchhHHHHHHHHHhcCCC------
Q 043637 213 NVIVRRYLVAGNGKEAVVMFFKMLREDIRPLN------FTFANALFACSFL---SSPYEGMQIHGVIIKIDFEG------ 277 (693)
Q Consensus 213 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~g~~~------ 277 (693)
.+.+...++.|+.+....+++.+...|..++. ..-.+.+..++.. |+.+-+..+++.-...+...
T Consensus 3 ~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 82 (256)
T 2etb_A 3 RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQ 82 (256)
T ss_dssp HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCC
T ss_pred ccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccc
Q ss_pred ---chHHHHHHHHHHHHcCChhHHHhhhcCCCCCCchh---------------HHHHHHHHHhcCCHHHHHHHHh---hC
Q 043637 278 ---DDVVLGSLTEMYVKCGRLEDARGLLDQPDERNIIS---------------WTSIVSGYAISGRIREARELFN---EM 336 (693)
Q Consensus 278 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------------~~~li~~~~~~g~~~~A~~~~~---~~ 336 (693)
....-.+.+...+..|+.+-+..+++.....+... -.+.+...+..|+.+-+.-+++ .-
T Consensus 83 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~g 162 (256)
T 2etb_A 83 CTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQP 162 (256)
T ss_dssp CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred cccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC
Q ss_pred CC---CCcccHHHHHHHHHhCCCHHHHHH----HHHHHHHcCCCC---------CHhhHHHHHHHHhcccchhhHHHHHH
Q 043637 337 PE---RNVISWNAMLAGYTRSLLWKEALD----FVFLMRKTTKDI---------DQVTLGLILNVCAGLSEIKMGKEVHG 400 (693)
Q Consensus 337 ~~---~~~~~~~~l~~~~~~~~~~~~a~~----~~~~m~~~~~~p---------~~~~~~~ll~~~~~~~~~~~a~~~~~ 400 (693)
.. .|..-.+.|..+........+..+ +++.+.+.|..+ ....-.+.+...+..|+.+.+..+++
T Consensus 163 a~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~ 242 (256)
T 2etb_A 163 ASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ 242 (256)
T ss_dssp CCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHh
Q ss_pred H
Q 043637 401 F 401 (693)
Q Consensus 401 ~ 401 (693)
.
T Consensus 243 ~ 243 (256)
T 2etb_A 243 R 243 (256)
T ss_dssp H
T ss_pred C
No 336
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.49 E-value=64 Score=25.51 Aligned_cols=49 Identities=14% Similarity=0.140 Sum_probs=37.9
Q ss_pred HHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccCChh
Q 043637 46 AHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLD 94 (693)
Q Consensus 46 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 94 (693)
..++..+...+....|.++++.+.+.++..+..+.-..++.+...|-+.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4566777777777889999999988887778777777888888877544
No 337
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=23.39 E-value=1.3e+02 Score=21.66 Aligned_cols=63 Identities=10% Similarity=0.102 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCCCCchhhhHHHHHHhccCChhhHHHhhccCCCCCcccHHHHHHHHHhCCChhhH
Q 043637 61 ARKLESNLVTFYPTPPVFLLNRAIECYGKCGNLDDARGLFDEMPERDGGSWNAMLGAYTQNGFPGRT 127 (693)
Q Consensus 61 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 127 (693)
...+++.+.+.++- +..-...+. +.....+.|..+++.+.+.+..+|..++.++.+.+....|
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~---~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVR---NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHH---TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHH---cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 34567777777653 222222222 2357788899999888888888888888888887754433
No 338
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=23.09 E-value=3.7e+02 Score=23.27 Aligned_cols=46 Identities=11% Similarity=0.191 Sum_probs=31.8
Q ss_pred HHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 595 KLALQFFDSMRCKYGIIPQ-LEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 595 ~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
+++.++|..|..+ |+--. ...|......+...|++.+|..+|+.-.
T Consensus 131 ~~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 177 (223)
T 4aez_C 131 DEPVELFSFLAHH-HIGQESSIFYEEYANYFESRGLFQKADEVYQKGK 177 (223)
T ss_dssp SCHHHHHHHHHHT-TCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHC-CcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3566777777653 55444 4557777778888888888888887553
No 339
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.26 E-value=68 Score=24.98 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHhhcCccHHHHHHHHHHHHHhCCCCCchhhhHHHHHHhccC
Q 043637 46 AHLFQLCASSKAIVEARKLESNLVTFYPTPPVFLLNRAIECYGKCG 91 (693)
Q Consensus 46 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 91 (693)
..++..+...+....|.++++.+.+.++..+..+.-..++.+...|
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
No 340
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=21.37 E-value=2.2e+02 Score=25.37 Aligned_cols=59 Identities=10% Similarity=0.160 Sum_probs=48.9
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 043637 583 GILLACIHEGNVKLALQFFDSMRCKYGIIPQLEHYECMIKLYCRYGYMKELEDFVNRMP 641 (693)
Q Consensus 583 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 641 (693)
.|--.|....++.....++..|.......|++.....++++|.|.-+-.+|.+.+....
T Consensus 178 GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~L 236 (268)
T 2fv2_A 178 GLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCL 236 (268)
T ss_dssp HHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHS
T ss_pred hHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 34456777778888888899998766778999999999999999999999998888654
No 341
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=21.10 E-value=1e+02 Score=22.40 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=27.7
Q ss_pred CCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCchHH
Q 043637 192 MVMTDARRMFDDIQNKNAVSWNVIVRRYLVAGNGKEA 228 (693)
Q Consensus 192 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 228 (693)
...+.|.++++.+++++..+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4678888888888888888888888888766654443
No 342
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=21.08 E-value=1.7e+02 Score=26.26 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=6.3
Q ss_pred ccCChhhHHHhhc
Q 043637 89 KCGNLDDARGLFD 101 (693)
Q Consensus 89 ~~g~~~~A~~~~~ 101 (693)
..|+.+-+..+++
T Consensus 120 ~~g~~~~v~~Ll~ 132 (276)
T 4hbd_A 120 SHANFPVVQQLLD 132 (276)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHH
Confidence 4455555444444
No 343
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=21.05 E-value=7.2e+02 Score=25.89 Aligned_cols=337 Identities=11% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHcCChhHHHhhhcCC---CCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC---------CCcccHHHHHHHH
Q 043637 284 SLTEMYVKCGRLEDARGLLDQP---DERNIISWTSIVSGYAISGRIREARELFNEMPE---------RNVISWNAMLAGY 351 (693)
Q Consensus 284 ~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~ 351 (693)
.++-.+.|+|++++|.++.++. .+.-...+...+..|+...+-.--.++-+++.. ++...|-..+-..
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s~~~~L~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~I 236 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIKSSLDGDPYRLAVYKL 236 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q ss_pred HhCCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHhccc-----------chhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 043637 352 TRSLLWKEALDFVFLMRKT-TKDIDQVTLGLILNVCAGLS-----------EIKMGKEVHGFIHRNDYSSNIFVSNALLD 419 (693)
Q Consensus 352 ~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 419 (693)
.-..+.. -... .+..+..-|-.+=-.+.+.+ .++.......+.-+.-+.+ ....
T Consensus 237 ig~cD~~--------~~~~~~v~~siED~LWl~L~lvre~~~~~~~~~e~ytL~~LQ~~I~~yGe~~F~~------lYf~ 302 (661)
T 2qx5_A 237 IGRCDLS--------RKNIPAVTLSIEDWLWMHLMLIKEKDAENDPVYERYSLEDFQNIIISYGPSRFSN------YYLQ 302 (661)
T ss_dssp HHTCCGG--------GCCCGGGCCSHHHHHHHHHHTCCC----------CCCHHHHHHHHHHHCGGGGTT------CHHH
T ss_pred Hhccccc--------ccchHHHhccHHHHHHHHHHhccCCCcccccccccccHHHHHHHHHHhhhhhhhh------HHHH
Q ss_pred HHHHcCChHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCHHHHHHHHHHhcc---cCChHH
Q 043637 420 MYRKCGNLRSARIWFYQMSQRRDKVSWNAVLTGYARRGQSEEAMTSFSEMQWET-RPSKFTFETLLAACAN---ISSLEQ 495 (693)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~p~~~~~~~ll~~~~~---~~~~~~ 495 (693)
++.-.|+++.|+..+... +...--.+.-++...|-... =+.+.... .-...-+..||..|.+ ..+...
T Consensus 303 vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~----~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~ 374 (661)
T 2qx5_A 303 TLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI----DSSTRLTKKPKRDIRFANILANYTKSFRYSDPRV 374 (661)
T ss_dssp HHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC---------------------CHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC----CCcccccCCCcccccHHHHHHHHHHHhhcCCHHH
Q ss_pred HHHHHHHHHHhC-CCcchhHHHHHHHHHHhhCCHHHHH-----------HHHhcCCC---------CCHHHHHHHHHHHH
Q 043637 496 GKQIHCFVIRNC-YEINVVCRGALVEVYTKCCCLEYAI-----------RVFKESSS---------LDVIICNSMILGFC 554 (693)
Q Consensus 496 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~-----------~~~~~~~~---------~~~~~~~~l~~~~~ 554 (693)
|.+++-.+.-.+ ..-.......+-+.....+.++.-+ -++++-.+ --.........-+.
T Consensus 375 Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~~aA~~ae 454 (661)
T 2qx5_A 375 AVEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTITEQAARRAD 454 (661)
T ss_dssp HHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHHHHHHHHHH
Q ss_pred hCCChHHHHHHHHHHHHCCCCCChHHHHHHH-HHHhccC---------------cHHHHHHHHHHhHHh-----cCCCCC
Q 043637 555 HNERGREALEVFGLMKKEGIKPDHITFHGIL-LACIHEG---------------NVKLALQFFDSMRCK-----YGIIPQ 613 (693)
Q Consensus 555 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~-~~~~~~g---------------~~~~A~~~~~~~~~~-----~~~~p~ 613 (693)
..|++++|+.+|.-..+ ..--....+.++ .+..... -...|.++.+..... .-...+
T Consensus 455 ~~G~~~dAi~LY~La~~--~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~~~ 532 (661)
T 2qx5_A 455 EDGRIYDSILLYQLAEE--YDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHVKN 532 (661)
T ss_dssp HTTCHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCHHH
T ss_pred HCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhccHHH
Q ss_pred hhHHHHHHHH-----HHhcCChHHHHHHHHhCCCCC
Q 043637 614 LEHYECMIKL-----YCRYGYMKELEDFVNRMPFNP 644 (693)
Q Consensus 614 ~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~ 644 (693)
..++..|.+. +...|++++|++.++++..-|
T Consensus 533 ~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~llP 568 (661)
T 2qx5_A 533 KEICMLLLNISSIRELYFNKQWQETLSQMELLDLLP 568 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSCSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
No 344
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.56 E-value=4e+02 Score=22.86 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCC---CCCHH--------HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 043637 528 LEYAIRVFKESS---SLDVI--------ICNSMILGFCHNERGREALEVFGLMKK 571 (693)
Q Consensus 528 ~~~A~~~~~~~~---~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~m~~ 571 (693)
++.|+.+++.+. ..+.. .--..+..|.+.|.+++|.+++++...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 678888887665 11111 122345668888999999999988877
No 345
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.17 E-value=1.6e+02 Score=24.45 Aligned_cols=15 Identities=13% Similarity=0.361 Sum_probs=8.4
Q ss_pred HHHHHHHHH-CCCCCC
Q 043637 563 LEVFGLMKK-EGIKPD 577 (693)
Q Consensus 563 ~~~~~~m~~-~g~~p~ 577 (693)
..+++.+.+ .|..++
T Consensus 133 ~~iv~~Ll~~~gad~~ 148 (186)
T 3t8k_A 133 IPLYKLIFSQSGLQLL 148 (186)
T ss_dssp HHHHHHHHTSTTCCTT
T ss_pred HHHHHHHHHhcCCCCc
Confidence 445555566 565554
Done!