BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043638
         (198 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P58021|TM9S2_MOUSE Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2
           SV=1
          Length = 662

 Score = 35.4 bits (80), Expect = 0.27,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 58  GWEWVYDKITPAARQQIIQNVFQSDGWNVDVPSNNAVSFVSRHGFVFEVNR-ELMTCSCR 116
           GW+ V+  I    R+ ++ +VF   G  + + +   + F    GF+   NR  LMTC+  
Sbjct: 346 GWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACL-GFLSPANRGALMTCAVV 404

Query: 117 LWQLSGIPCEH-ACRCIHSWG 136
           LW L G P  + A R   S+G
Sbjct: 405 LWVLLGTPAGYVAARFYKSFG 425


>sp|Q66HG5|TM9S2_RAT Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2
           PE=2 SV=1
          Length = 663

 Score = 35.4 bits (80), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 58  GWEWVYDKITPAARQQIIQNVFQSDGWNVDVPSNNAVSFVSRHGFVFEVNR-ELMTCSCR 116
           GW+ V+  I    R+ ++ +VF   G  + + +   + F    GF+   NR  LMTC+  
Sbjct: 347 GWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACL-GFLSPANRGALMTCAVV 405

Query: 117 LWQLSGIPCEH-ACRCIHSWG 136
           LW L G P  + A R   S+G
Sbjct: 406 LWVLLGTPAGYVAARFYKSFG 426


>sp|Q5R8Y6|TM9S2_PONAB Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2
           SV=1
          Length = 663

 Score = 35.0 bits (79), Expect = 0.30,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 58  GWEWVYDKITPAARQQIIQNVFQSDGWNVDVPSNNAVSFVSRHGFVFEVNR-ELMTCSCR 116
           GW+ V+  I    R+ ++ +VF   G  + + +   + F    GF+   NR  LMTC+  
Sbjct: 347 GWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACL-GFLSPANRGALMTCAVV 405

Query: 117 LWQLSGIPCEH-ACRCIHSWG 136
           LW L G P  + A R   S+G
Sbjct: 406 LWVLLGTPAGYVAARFYKSFG 426


>sp|Q99805|TM9S2_HUMAN Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1
           SV=1
          Length = 663

 Score = 35.0 bits (79), Expect = 0.30,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 58  GWEWVYDKITPAARQQIIQNVFQSDGWNVDVPSNNAVSFVSRHGFVFEVNR-ELMTCSCR 116
           GW+ V+  I    R+ ++ +VF   G  + + +   + F    GF+   NR  LMTC+  
Sbjct: 347 GWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACL-GFLSPANRGALMTCAVV 405

Query: 117 LWQLSGIPCEH-ACRCIHSWG 136
           LW L G P  + A R   S+G
Sbjct: 406 LWVLLGTPAGYVAARFYKSFG 426


>sp|Q3EBQ3|FRS2_ARATH Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2
           PE=2 SV=1
          Length = 807

 Score = 32.7 bits (73), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 96  FVSRHGFVFEVNRELMT--CSCRLWQLSGIPCEHACRCIHS 134
           F  R  F   +N EL+   CSC L++  G  C+HA   + S
Sbjct: 493 FEERQNFFVALNNELLDACCSCHLFEYQGFLCKHAILVLQS 533


>sp|Q9SY66|FRS11_ARATH Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana GN=FRS11
           PE=2 SV=1
          Length = 680

 Score = 32.3 bits (72), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 110 LMTCSCRLWQLSGIPCEHACRCI 132
           +++CSC+L++ SG  C HA R +
Sbjct: 563 IISCSCQLFEFSGFLCRHALRVL 585


>sp|Q5UBY2|FRS1_ARATH Protein FAR1-RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=FRS1
           PE=1 SV=1
          Length = 687

 Score = 31.2 bits (69), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 111 MTCSCRLWQLSGIPCEHACRCIHSWGD 137
           + CSCRL++L G  C HA   +   G+
Sbjct: 451 VVCSCRLFELKGFLCRHAMIVLQMSGE 477


>sp|Q7TMR0|PCP_MOUSE Lysosomal Pro-X carboxypeptidase OS=Mus musculus GN=Prcp PE=2 SV=2
          Length = 491

 Score = 30.4 bits (67), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 111 MTCSCRLWQLSG-IPCEHACRCI----HSWGDKLDKHVHRLWSVDEYRSAYGPGMQMLRE 165
           +  S  +WQL G +PC    + +       G    + + + W+V +  S  G G+Q L  
Sbjct: 198 LAASAPIWQLDGMVPCGEFMKIVTNDFRKSGPYCSESIRKSWNVIDKLSGSGSGLQSLTN 257

Query: 166 ITHWEWQTKDNVLPPMKN 183
           I H         +P +K 
Sbjct: 258 ILHLCSPLTSEKIPTLKG 275


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.131    0.445 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,901,756
Number of Sequences: 539616
Number of extensions: 2851599
Number of successful extensions: 5574
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5573
Number of HSP's gapped (non-prelim): 11
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)