Query 043638
Match_columns 198
No_of_seqs 132 out of 413
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 11:34:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043638.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043638hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0z_A Glycoprotein G2; zinc-b 54.9 4 0.00014 24.1 0.9 15 110-124 21-35 (42)
2 1wq6_A AML1-ETO; NHR2, oncopro 28.0 68 0.0023 20.9 3.5 25 26-50 18-47 (72)
3 1ov9_A VICH protein; dimer, he 19.2 1.6E+02 0.0056 17.7 3.9 27 31-58 17-43 (50)
4 1hyk_A Agouti related protein; 17.9 40 0.0014 20.2 0.8 19 110-128 28-46 (46)
5 1wlx_A Alpha-actinin 4; three- 16.3 52 0.0018 24.1 1.3 26 21-46 21-50 (129)
6 1oef_A Apolipoprotein E; glyco 15.1 1.1E+02 0.0036 15.7 2.0 20 37-56 4-23 (26)
7 3j20_T 30S ribosomal protein S 13.7 2E+02 0.0068 21.1 3.8 97 31-132 8-120 (132)
8 2dmn_A Homeobox protein TGIF2L 13.1 1.8E+02 0.0061 18.9 3.2 42 16-57 14-64 (83)
9 3m50_P N.plumbaginifolia H+-tr 11.7 1E+02 0.0036 16.8 1.4 21 127-148 10-30 (31)
10 2l2o_A UPF0727 protein C6ORF11 11.7 25 0.00087 24.2 -1.5 22 15-36 37-58 (89)
No 1
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=54.94 E-value=4 Score=24.11 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=13.3
Q ss_pred cceeeccccccCCCC
Q 043638 110 LMTCSCRLWQLSGIP 124 (198)
Q Consensus 110 ~~tCtC~~wql~giP 124 (198)
...|+|+.|++.|.|
T Consensus 21 ~~~C~CG~y~~~~kp 35 (42)
T 2l0z_A 21 LGGCRCGKYPNLKKP 35 (42)
T ss_dssp TSSBTTTTBCCCCCC
T ss_pred CceeccccccCCCCc
Confidence 467999999999988
No 2
>1wq6_A AML1-ETO; NHR2, oncoprotein; 2.00A {Homo sapiens}
Probab=28.02 E-value=68 Score=20.95 Aligned_cols=25 Identities=12% Similarity=0.401 Sum_probs=18.4
Q ss_pred HHHHhhhCCc-----HHHHHHHHHHHHHHH
Q 043638 26 IWLSKFLDLN-----VAQRYTTITRTIAEM 50 (198)
Q Consensus 26 ~~i~~~R~lP-----I~~m~e~ir~~~~~~ 50 (198)
+|..+.+.+| |.+|||.+++-+..+
T Consensus 18 ~~~eeWkhi~~mLnCI~~MVEKTrRsltvL 47 (72)
T 1wq6_A 18 EWAEEWKHLDHLLNCIMDMVEKTRRSLTVL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666667666 789999888876644
No 3
>1ov9_A VICH protein; dimer, helix, coiled-coil, DNA binding protein; 2.30A {Vibrio cholerae} SCOP: a.155.1.1
Probab=19.18 E-value=1.6e+02 Score=17.69 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=23.2
Q ss_pred hhCCcHHHHHHHHHHHHHHHHHHHHHhh
Q 043638 31 FLDLNVAQRYTTITRTIAEMFQRRYLAG 58 (198)
Q Consensus 31 ~R~lPI~~m~e~ir~~~~~~f~~Rr~~a 58 (198)
+|++++ ..++.+..|+..-+.+||...
T Consensus 17 arelsl-e~Lee~~eKl~~Vv~Erree~ 43 (50)
T 1ov9_A 17 ARELTI-EQLEEALDKLTTVVQERKEAE 43 (50)
T ss_dssp HTTSCH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 678886 778999999999999999754
No 4
>1hyk_A Agouti related protein; cysteine rich, disulfide bond, ICK, inhibitor cystine knot, melanocortin antagonists, AGRP, endogenous antagonist; NMR {Synthetic} SCOP: g.3.5.1 PDB: 1mr0_A
Probab=17.92 E-value=40 Score=20.21 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=15.0
Q ss_pred cceeeccccccCCCCchhH
Q 043638 110 LMTCSCRLWQLSGIPCEHA 128 (198)
Q Consensus 110 ~~tCtC~~wql~giPC~Ha 128 (198)
+--|.||+..-.-.||+|.
T Consensus 28 ~tiCyCR~l~~~~~~~~~~ 46 (46)
T 1hyk_A 28 NAFCYCRKLGTAMNPCSRT 46 (46)
T ss_dssp SSCEEEECCCCSSSCSSCC
T ss_pred hheeeeeecccccCccCCC
Confidence 4568888888888999873
No 5
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=16.27 E-value=52 Score=24.10 Aligned_cols=26 Identities=8% Similarity=0.328 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhhC----CcHHHHHHHHHHH
Q 043638 21 SEQLRIWLSKFLD----LNVAQRYTTITRT 46 (198)
Q Consensus 21 aEsfN~~i~~~R~----lPI~~m~e~ir~~ 46 (198)
|.-||+|+.++.+ --++.-|+.|+..
T Consensus 21 Aa~fNnW~e~A~EdL~D~~~v~sleEI~~L 50 (129)
T 1wlx_A 21 AAPFNNWMESAMEDLQDMFIVHTIEEIEGL 50 (129)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCSHHHHHHH
T ss_pred hHHHHHHHHhHHHHhccchhhccHHHHHHH
Confidence 5679999999875 2233445555443
No 6
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=15.05 E-value=1.1e+02 Score=15.67 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043638 37 AQRYTTITRTIAEMFQRRYL 56 (198)
Q Consensus 37 ~~m~e~ir~~~~~~f~~Rr~ 56 (198)
.++.|.|+.++.+.+.+-++
T Consensus 4 ~P~~e~ik~q~~~i~e~i~~ 23 (26)
T 1oef_A 4 EPLVEDMQRQWAGLVEKVQA 23 (26)
T ss_dssp TTHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHh
Confidence 35678899988888876554
No 7
>3j20_T 30S ribosomal protein S19P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=13.69 E-value=2e+02 Score=21.09 Aligned_cols=97 Identities=8% Similarity=0.089 Sum_probs=57.6
Q ss_pred hhCCcHHHHHHHHHHHHHHHHHHHHHhhhhcccccCChh-hhhhhhhhhhhhcCC---c-ee-------eccCC-Ccce-
Q 043638 31 FLDLNVAQRYTTITRTIAEMFQRRYLAGWEWVYDKITPA-ARQQIIQNVFQSDGW---N-VD-------VPSNN-AVSF- 96 (198)
Q Consensus 31 ~R~lPI~~m~e~ir~~~~~~f~~Rr~~a~~~~~~~l~p~-~~~~i~p~i~k~~~~---~-~~-------V~~~g-~~~f- 96 (198)
.|++.+-+|++.-.+.+++.+..|++.+.+. +|. .+..++.++.+.-.. . +. +++.- +..|
T Consensus 8 yrG~~ld~L~~ms~~~l~~L~~ar~rRslkk-----G~~~~~~~LlkKi~k~~~~~~~~~ikT~sR~s~IlP~mVG~ti~ 82 (132)
T 3j20_T 8 YRGYTLEQLMNMSLEELARLFPARQRRSLKR-----GLTPEQKKLLRKIRLAKKGKYKKPIRTHCRDMIILPEMVGLTIY 82 (132)
T ss_dssp SSSSCHHHHHHHHHHHHHHHSCHHHHHHHHH-----CCCHHHHHHHHHHHHHSSSSCCCCEEECCCSCBCCGGGTTCEEE
T ss_pred EcCCcHHHHHcCCHHHHHHHhhHHHHHHhhc-----CCchhhHHHHHHHHHHHhccCCcceEecccCCEeChHHCCcEEE
Confidence 4678889999999999999998887765432 453 566677666654321 1 11 11111 1234
Q ss_pred EEeCCeEEEEEcccc--eeeccccccCCCCchhHHHHH
Q 043638 97 VSRHGFVFEVNRELM--TCSCRLWQLSGIPCEHACRCI 132 (198)
Q Consensus 97 V~~~~~~~~VdL~~~--tCtC~~wql~giPC~HaiAa~ 132 (198)
|..|....-|.+.+. -.-=++|-.+..|..|+=+.+
T Consensus 83 VyNGK~f~~V~It~eMVGhkLGEFa~Trk~~~H~~pGi 120 (132)
T 3j20_T 83 VHNGKEFVPVEIKPEMIGHYLGEFAPTRKKVEHGAPGV 120 (132)
T ss_dssp EECSSSEEEEECCGGGTTSBGGGTSCSSCCCCCC----
T ss_pred EECCCeeeeeecccCccceeeeeeeeEeccCcCCCCCc
Confidence 666555556666443 234477778888888865543
No 8
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=13.06 E-value=1.8e+02 Score=18.90 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=27.1
Q ss_pred cccchHHHHHHHHHhh--hCCcHH-------HHHHHHHHHHHHHHHHHHHh
Q 043638 16 VTNSSSEQLRIWLSKF--LDLNVA-------QRYTTITRTIAEMFQRRYLA 57 (198)
Q Consensus 16 mt~N~aEsfN~~i~~~--R~lPI~-------~m~e~ir~~~~~~f~~Rr~~ 57 (198)
.|..-.+.+..|+.+. ..+|=. ..+.....++..||..||..
T Consensus 14 ~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r 64 (83)
T 2dmn_A 14 LPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRR 64 (83)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhh
Confidence 4455567788888775 345522 22223367799999999875
No 9
>3m50_P N.plumbaginifolia H+-translocating ATPase mRNA; all helical, protein-protein complex, protein binding; HET: EBT; 2.60A {Nicotiana plumbaginifolia} PDB: 3m51_P* 4dx0_P*
Probab=11.74 E-value=1e+02 Score=16.85 Aligned_cols=21 Identities=10% Similarity=0.281 Sum_probs=15.5
Q ss_pred hHHHHHHHhcCCcccccccccc
Q 043638 127 HACRCIHSWGDKLDKHVHRLWS 148 (198)
Q Consensus 127 HaiAa~~~~~~~~~~~v~~~ys 148 (198)
|+=+++..+|+|++. |.+.|+
T Consensus 10 hvESv~KLKglDi~~-i~~~yT 30 (31)
T 3m50_P 10 HVEAVVKLKGLDIET-IQQSYD 30 (31)
T ss_dssp HHHHHHHHTTCCSCC-CCCCCC
T ss_pred HHHHHHHHhcCChhh-hhhccc
Confidence 667788888988876 555665
No 10
>2l2o_A UPF0727 protein C6ORF115; HSPC280, winged helix, unknown function; NMR {Homo sapiens}
Probab=11.67 E-value=25 Score=24.19 Aligned_cols=22 Identities=14% Similarity=-0.053 Sum_probs=12.4
Q ss_pred ccccchHHHHHHHHHhhhCCcH
Q 043638 15 EVTNSSSEQLRIWLSKFLDLNV 36 (198)
Q Consensus 15 ~mt~N~aEsfN~~i~~~R~lPI 36 (198)
..++|++|.+...|+.||..-+
T Consensus 37 d~~~ni~e~LVGtL~~ArK~k~ 58 (89)
T 2l2o_A 37 DKSANLFEALVGTLKAAKRRKI 58 (89)
T ss_dssp HHHHCCCTTHHHHHHHHHHTTS
T ss_pred hHHhhHHHHHHHHHHHHHhcCc
Confidence 3556666666666655554433
Done!