Query 043638
Match_columns 198
No_of_seqs 132 out of 413
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 11:35:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043638.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043638hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ls1a1 a.24.13.1 (A:1-88) Sig 32.1 29 0.0021 21.9 4.2 32 16-47 1-38 (88)
2 d1wi3a_ a.4.1.1 (A:) DNA-bindi 27.1 57 0.0042 19.3 4.8 38 21-58 19-63 (71)
3 d1lr1a_ a.155.1.1 (A:) H1 prot 22.4 48 0.0035 19.3 3.5 26 31-57 17-42 (57)
4 d1x2na1 a.4.1.1 (A:6-67) Homeo 17.8 67 0.0049 18.5 3.6 42 16-57 9-59 (62)
5 d1wgwa_ a.24.13.1 (A:) Signal 17.3 55 0.004 21.0 3.3 30 17-46 7-42 (99)
6 d1j8yf1 a.24.13.1 (F:3-86) Sig 13.5 50 0.0036 20.5 2.2 32 16-47 1-34 (84)
7 d1pufb_ a.4.1.1 (B:) pbx1 {Hum 13.3 1E+02 0.0073 18.1 3.6 43 16-58 8-59 (73)
8 d1f46a_ d.129.4.1 (A:) Cell-di 12.5 18 0.0013 24.8 -0.4 33 18-50 101-134 (139)
9 d1clvi_ g.3.2.1 (I:) alpha-amy 11.5 30 0.0022 17.3 0.4 6 9-14 4-9 (32)
10 d1ugpa_ d.149.1.1 (A:) Cobalt- 9.0 1.5E+02 0.011 21.5 3.8 15 111-125 108-122 (203)
No 1
>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=32.09 E-value=29 Score=21.92 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=24.0
Q ss_pred cccchHHHHHHHHHhhhCCc------HHHHHHHHHHHH
Q 043638 16 VTNSSSEQLRIWLSKFLDLN------VAQRYTTITRTI 47 (198)
Q Consensus 16 mt~N~aEsfN~~i~~~R~lP------I~~m~e~ir~~~ 47 (198)
|-.++++.|.+.|+..++.. |-+.+..||+-|
T Consensus 1 MF~~L~~~l~~a~~~l~g~~~i~E~~i~~~l~eir~AL 38 (88)
T d1ls1a1 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRAL 38 (88)
T ss_dssp CCHHHHHHHHHHHHTTTTSCSCCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 56789999999999998876 445566665543
No 2
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.11 E-value=57 Score=19.26 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhhCCcHHHHHHHHH-------HHHHHHHHHHHHhh
Q 043638 21 SEQLRIWLSKFLDLNVAQRYTTIT-------RTIAEMFQRRYLAG 58 (198)
Q Consensus 21 aEsfN~~i~~~R~lPI~~m~e~ir-------~~~~~~f~~Rr~~a 58 (198)
.+.+.+++.+.-.+|=.+..+.|- ..+-.||.+||.+.
T Consensus 19 ~~~Le~~F~~~~~~P~~~~~~~La~~lgl~~~qV~~WFqNrR~k~ 63 (71)
T d1wi3a_ 19 LGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHhhHhhh
Confidence 466788887666688666555554 55899999999864
No 3
>d1lr1a_ a.155.1.1 (A:) H1 protein (H-NS) {Escherichia coli [TaxId: 562]}
Probab=22.35 E-value=48 Score=19.33 Aligned_cols=26 Identities=4% Similarity=0.069 Sum_probs=22.8
Q ss_pred hhCCcHHHHHHHHHHHHHHHHHHHHHh
Q 043638 31 FLDLNVAQRYTTITRTIAEMFQRRYLA 57 (198)
Q Consensus 31 ~R~lPI~~m~e~ir~~~~~~f~~Rr~~ 57 (198)
+|++++ ..+|.+..|+..-..+||+.
T Consensus 17 aRE~sl-E~LEe~lEKl~~Vv~Erree 42 (57)
T d1lr1a_ 17 ARESTL-ETLEEMLEKLEVVVNERREE 42 (57)
T ss_dssp TTTSCT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCH-HHHHHHHHHHHHHHHHHHHH
Confidence 788888 77899999999999999974
No 4
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.80 E-value=67 Score=18.49 Aligned_cols=42 Identities=10% Similarity=0.217 Sum_probs=27.5
Q ss_pred cccchHHHHHHHHHhhhC--CcHHHHHHH-------HHHHHHHHHHHHHHh
Q 043638 16 VTNSSSEQLRIWLSKFLD--LNVAQRYTT-------ITRTIAEMFQRRYLA 57 (198)
Q Consensus 16 mt~N~aEsfN~~i~~~R~--lPI~~m~e~-------ir~~~~~~f~~Rr~~ 57 (198)
.+....+-++.|+..... +|--+-.+. ....+..||..+|..
T Consensus 9 ~~~~~~~iL~~wf~~~~~nPyPs~~e~~~La~~~~l~~~qI~~WF~N~R~R 59 (62)
T d1x2na1 9 LPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRR 59 (62)
T ss_dssp CCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHhHHHHHHHHHH
Confidence 344556778999988654 563333333 346689999998864
No 5
>d1wgwa_ a.24.13.1 (A:) Signal recognition particle 54 kDa protein, SRP54 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.32 E-value=55 Score=20.95 Aligned_cols=30 Identities=3% Similarity=0.051 Sum_probs=22.0
Q ss_pred ccchHHHHHHHHHhhhCCc------HHHHHHHHHHH
Q 043638 17 TNSSSEQLRIWLSKFLDLN------VAQRYTTITRT 46 (198)
Q Consensus 17 t~N~aEsfN~~i~~~R~lP------I~~m~e~ir~~ 46 (198)
..||.+.|++.|+..+... |-+++..|+.-
T Consensus 7 ~a~L~~~i~~a~~~l~~~~~i~E~~I~~~l~eI~~A 42 (99)
T d1wgwa_ 7 GADLGRKITSALRSLSNATIINEEVLNAMLKEVCTA 42 (99)
T ss_dssp CSHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 3589999999999988877 34555555544
No 6
>d1j8yf1 a.24.13.1 (F:3-86) Signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=13.52 E-value=50 Score=20.53 Aligned_cols=32 Identities=13% Similarity=0.252 Sum_probs=14.4
Q ss_pred cccchHHHHHHHHHhhh--CCcHHHHHHHHHHHH
Q 043638 16 VTNSSSEQLRIWLSKFL--DLNVAQRYTTITRTI 47 (198)
Q Consensus 16 mt~N~aEsfN~~i~~~R--~lPI~~m~e~ir~~~ 47 (198)
|++|++.+|.+.....+ +.-|-+++..||+-|
T Consensus 1 l~~~l~~a~~kl~~~~~i~E~~i~~~l~eIr~AL 34 (84)
T d1j8yf1 1 LLDNLRDTVRKFLTGSSSYDKAVEDFIKELQKSL 34 (84)
T ss_dssp CHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 45556655554433321 112445555555443
No 7
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.34 E-value=1e+02 Score=18.14 Aligned_cols=43 Identities=9% Similarity=0.196 Sum_probs=28.2
Q ss_pred cccchHHHHHHHHHhhhC--CcHH-------HHHHHHHHHHHHHHHHHHHhh
Q 043638 16 VTNSSSEQLRIWLSKFLD--LNVA-------QRYTTITRTIAEMFQRRYLAG 58 (198)
Q Consensus 16 mt~N~aEsfN~~i~~~R~--lPI~-------~m~e~ir~~~~~~f~~Rr~~a 58 (198)
.|.---+.+.+|+.+... +|=. ..+......+..||..+|...
T Consensus 8 ~t~~q~~~Le~~f~~~~~~pYPs~~~k~~La~~~gl~~~qv~~WF~N~R~r~ 59 (73)
T d1pufb_ 8 FNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRY 59 (73)
T ss_dssp CCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHCcCHHHhHHHHHHHHHHh
Confidence 344455778899987554 5633 333334567999999999764
No 8
>d1f46a_ d.129.4.1 (A:) Cell-division protein ZipA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=12.51 E-value=18 Score=24.81 Aligned_cols=33 Identities=9% Similarity=0.019 Sum_probs=22.0
Q ss_pred cchHHHHHHHHHhhhCCcHH-HHHHHHHHHHHHH
Q 043638 18 NSSSEQLRIWLSKFLDLNVA-QRYTTITRTIAEM 50 (198)
Q Consensus 18 ~N~aEsfN~~i~~~R~lPI~-~m~e~ir~~~~~~ 50 (198)
..+||.||..|.+....|+. ++++.+|.++.++
T Consensus 101 ~~la~~l~g~l~D~~r~~lt~q~i~~~R~~i~e~ 134 (139)
T d1f46a_ 101 QHIADEVGGVVLDDQRRMMTPQKLREYQDIIREV 134 (139)
T ss_dssp HHHHHHHTCEEECTTSCBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 45566666666666666664 7888888877665
No 9
>d1clvi_ g.3.2.1 (I:) alpha-amylase inhibitor (AAI) {Prince's feather (Amaranthus hypochondriacus) [TaxId: 28502]}
Probab=11.47 E-value=30 Score=17.26 Aligned_cols=6 Identities=17% Similarity=0.844 Sum_probs=2.3
Q ss_pred cccccc
Q 043638 9 QWVKST 14 (198)
Q Consensus 9 ~~~k~~ 14 (198)
+|.||+
T Consensus 4 kwnrcg 9 (32)
T d1clvi_ 4 KWNRCG 9 (32)
T ss_dssp TTSEEC
T ss_pred cccccC
Confidence 343333
No 10
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=9.01 E-value=1.5e+02 Score=21.45 Aligned_cols=15 Identities=40% Similarity=1.039 Sum_probs=12.6
Q ss_pred ceeeccccccCCCCc
Q 043638 111 MTCSCRLWQLSGIPC 125 (198)
Q Consensus 111 ~tCtC~~wql~giPC 125 (198)
--|||--|.++|+|=
T Consensus 108 TLCSCYP~~~LGlpP 122 (203)
T d1ugpa_ 108 TLCSCYPWPVLGLPP 122 (203)
T ss_dssp TTSCCCCHHHHCSCC
T ss_pred ccccccccccCCCCc
Confidence 359999999999983
Done!