BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043639
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JSD|A Chain A, Solution Structure Of Mmp20 Complexed With Nngh
Length = 160
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 94/171 (54%), Gaps = 16/171 (9%)
Query: 57 GKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFAD 116
G+P+W ++ TL+Y SK + ++ + A W+S +P+SF+ + + AD
Sbjct: 1 GEPKWKKN---TLTYRISK--YTPSMSSVEVDKAVEMALQAWSSAVPLSFVRINSGE-AD 54
Query: 117 IRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAVDL 173
I I F NGDHGD PFDG G LAH+F+P G H D AE W + +L
Sbjct: 55 IMISFENGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWTM------GTNGFNL 108
Query: 174 ESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDK-KVDLALDDIQGVQALYG 223
+VA HE GH LGL HS A+MYPT K ++ L DD++G+QALYG
Sbjct: 109 FTVAAHEFGHALGLAHSTDPSALMYPTYKYKNPYGFHLPKDDVKGIQALYG 159
>pdb|1SU3|A Chain A, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
pdb|1SU3|B Chain B, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
Length = 450
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 98/199 (49%), Gaps = 18/199 (9%)
Query: 52 YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
+VL G PRW + L+Y EN L D+ ++AF W++V P++F + +
Sbjct: 81 FVLTEGNPRWEQ---THLTYRI--ENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSE 135
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
ADI I F GDH D PFDG G LAH+F P G H D E W +F
Sbjct: 136 GQ-ADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFRE---- 190
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYG--SNP 226
+L VA HE+GH LGL+HS A+MYP+ V LA DDI G+QA+YG NP
Sbjct: 191 --YNLHRVAAHELGHSLGLSHSTDIGALMYPSYT-FSGDVQLAQDDIDGIQAIYGRSQNP 247
Query: 227 NFTIGSLVESDISTNLAVD 245
IG + L D
Sbjct: 248 VQPIGPQTPKACDSKLTFD 266
>pdb|1KBC|A Chain A, Procarboxypeptidase Ternary Complex
pdb|1KBC|B Chain B, Procarboxypeptidase Ternary Complex
pdb|1JAN|A Chain A, Complex Of Pro-Leu-Gly-Hydroxylamine With The Catalytic
Domain Of Matrix Metallo Proteinase-8 (Phe79 Form)
Length = 164
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 87/176 (49%), Gaps = 16/176 (9%)
Query: 52 YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
++L PG P+W R L+Y N L +++ K AF W+ P+ F
Sbjct: 1 FMLTPGNPKWER---TNLTYRI--RNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQ 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
+ ADI I FY DHGD PFDG G+LAH+F P G H DA ETW +
Sbjct: 56 GE-ADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT------NTS 108
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
+L VA HE GH LGL HS A+MYP R+ L DDI G+QA+YG
Sbjct: 109 ANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 164
>pdb|1BZS|A Chain A, Crystal Structure Of Mmp8 Complexed With Hmr2909
Length = 165
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 87/176 (49%), Gaps = 16/176 (9%)
Query: 52 YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
++L PG P+W R L+Y N L +++ K AF W+ P+ F
Sbjct: 1 FMLTPGNPKWER---TNLTYRI--RNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQ 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
+ ADI I FY DHGD PFDG G+LAH+F P G H DA ETW +
Sbjct: 56 GE-ADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT------NTS 108
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
+L VA HE GH LGL HS A+MYP R+ L DDI G+QA+YG
Sbjct: 109 ANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 164
>pdb|1MNC|A Chain A, Structure Of Human Neutrophil Collagenase Reveals Large
S1' Specificity Pocket
Length = 163
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 86/174 (49%), Gaps = 16/174 (9%)
Query: 54 LFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYD 113
L PG P+W R L+Y N L +++ K AF W+ P+ F +
Sbjct: 1 LTPGGPKWER---TNLTYRI--RNYTPQLSEAEVERAIKDAFELWSVASPLIFTGISQGE 55
Query: 114 FADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVA 170
ADI I FY DHGDG PFDG G+LAH+F P G H DA ETW +
Sbjct: 56 -ADINIAFYQRDHGDGSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT------NTSAN 108
Query: 171 VDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
+L VA HE GH LGL HS A+MYP R+ L DDI G+QA+YG
Sbjct: 109 YNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 162
>pdb|1JAQ|A Chain A, Complex Of 1-Hydroxylamine-2-Isobutylmalonyl-Ala-Gly-Nh2
With The Catalytic Domain Of Matrix Metallo Proteinase-8
(Met80 Form)
pdb|1JAP|A Chain A, Complex Of Pro-Leu-Gly-Hydroxylamine With The Catalytic
Domain Of Matrix Metallo Proteinase-8 (Met80 Form)
pdb|1JAO|A Chain A, Complex Of 3-Mercapto-2-Benzylpropanoyl-Ala-Gly-Nh2 With
The Catalytic Domain Of Matrix Metallo Proteinase-8
(Met80 Form)
pdb|1I73|A Chain A, Complex Of Pro-Leu-L-Trp Phosphonate With The Catalitic
Domain Of Matrix Metallo Proteinase-8 (Met80 Form)
pdb|1I76|A Chain A, Complex Of 2-(Biphenyl-4-Sulfonyl)-1,2,3,4-Tetrahydro-
Isoquinoline-3-Carboxylic Acid (D-Tic Derivative) With T
Catalitic Domain Of Matrix Metallo Proteinase-8 (Met80
Form)
pdb|1JJ9|A Chain A, Crystal Structure Of Mmp8-Barbiturate Complex Reveals
Mechanism For Collagen Substrate Recognition
pdb|1ZP5|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A N-
Hydroxyurea Inhibitor
pdb|1ZS0|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A
Phosphonate Inhibitor (s-enantiomer)
pdb|1ZVX|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A
Phosphonate Inhibitor (r-enantiomer)
pdb|1MMB|A Chain A, Complex Of Bb94 With The Catalytic Domain Of Matrix
Metalloproteinase-8
pdb|3DNG|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DNG|B Chain B, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPE|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPF|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPF|B Chain B, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
Length = 163
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 53 VLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDY 112
+L PG P+W R L+Y N L +++ K AF W+ P+ F
Sbjct: 1 MLTPGNPKWER---TNLTYRI--RNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQG 55
Query: 113 DFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPV 169
+ ADI I FY DHGD PFDG G+LAH+F P G H DA ETW +
Sbjct: 56 E-ADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT------NTSA 108
Query: 170 AVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
+L VA HE GH LGL HS A+MYP R+ L DDI G+QA+YG
Sbjct: 109 NYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 163
>pdb|3AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase
Complexed With Cgs-27023a, Nmr, Minimized Average
Structure
pdb|4AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase
Complexed With Cgs-27023a, Nmr, 30 Structures
pdb|1AYK|A Chain A, Inhibitor-Free Catalytic Fragment Of Human Fibroblast
Collagenase, Nmr, 30 Structures
pdb|1HFC|A Chain A, 1.56 Angstrom Structure Of Mature Truncated Human
Fibroblast Collagenase
pdb|2AYK|A Chain A, Inhibitor-Free Catalytic Fragment Of Human Fibroblast
Collagenase, Nmr, Minimized Average Structure
pdb|2TCL|A Chain A, Structure Of The Catalytic Domain Of Human Fibroblast
Collagenase Complexed With An Inhibitor
Length = 169
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 92/178 (51%), Gaps = 16/178 (8%)
Query: 53 VLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDY 112
VL G PRW + L+Y EN L D+ ++AF W++V P++F + +
Sbjct: 1 VLTEGNPRWEQ---THLTYRI--ENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEG 55
Query: 113 DFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPV 169
ADI I F GDH D PFDG G LAH+F P G H D E W +F
Sbjct: 56 Q-ADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNF------R 108
Query: 170 AVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPN 227
+L VA HE+GH LGL+HS A+MYP+ V LA DDI G+QA+YG + N
Sbjct: 109 EYNLHRVAAHELGHSLGLSHSTDIGALMYPSYT-FSGDVQLAQDDIDGIQAIYGRSQN 165
>pdb|2J0T|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|2J0T|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|2J0T|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
Length = 170
Score = 110 bits (275), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 92/178 (51%), Gaps = 16/178 (8%)
Query: 53 VLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDY 112
VL G PRW + L+Y EN L D+ ++AF W++V P++F + +
Sbjct: 2 VLTEGNPRWEQ---THLTYRI--ENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEG 56
Query: 113 DFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPV 169
ADI I F GDH D PFDG G LAH+F P G H D E W +F
Sbjct: 57 Q-ADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNF------R 109
Query: 170 AVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPN 227
+L VA HE+GH LGL+HS A+MYP+ V LA DDI G+QA+YG + N
Sbjct: 110 EYNLHRVAAHELGHSLGLSHSTDIGALMYPSYT-FSGDVQLAQDDIDGIQAIYGRSQN 166
>pdb|1FBL|A Chain A, Structure Of Full-Length Porcine Synovial Collagenase
(Mmp1) Reveals A C-Terminal Domain Containing A
Calcium-Linked, Four-Bladed Beta- Propeller
Length = 370
Score = 110 bits (274), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 92/179 (51%), Gaps = 16/179 (8%)
Query: 52 YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
+VL PG PRW L+Y EN L D+ ++AF W++V P++F + +
Sbjct: 1 FVLTPGNPRWEN---THLTYRI--ENYTPDLSREDVDRAIEKAFQLWSNVSPLTFTKVSE 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
ADI I F GDH D PFDG G LAH+F P G H D E W +F
Sbjct: 56 GQ-ADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTKNFRD---- 110
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPN 227
+L VA HE+GH LGL+HS A+MYP V L+ DDI G+QA+YG + N
Sbjct: 111 --YNLYRVAAHELGHSLGLSHSTDIGALMYPNYI-YTGDVQLSQDDIDGIQAIYGPSEN 166
>pdb|2CLT|A Chain A, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|2CLT|B Chain B, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|4AUO|A Chain A, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
pdb|4AUO|B Chain B, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
Length = 367
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 97/199 (48%), Gaps = 18/199 (9%)
Query: 52 YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
+VL G PRW + L+Y EN L D+ ++AF W++V P++F + +
Sbjct: 1 FVLTEGNPRWEQ---THLTYRI--ENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSE 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
ADI I F GDH D PFDG G LAH+F P G H D E W +F
Sbjct: 56 GQ-ADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFRE---- 110
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYG--SNP 226
+L VA H +GH LGL+HS A+MYP+ V LA DDI G+QA+YG NP
Sbjct: 111 --YNLHRVAAHALGHSLGLSHSTDIGALMYPSYT-FSGDVQLAQDDIDGIQAIYGRSQNP 167
Query: 227 NFTIGSLVESDISTNLAVD 245
IG + L D
Sbjct: 168 VQPIGPQTPKACDSKLTFD 186
>pdb|2DDY|A Chain A, Solution Structure Of Matrilysin (Mmp-7) Complexed To
Constraint Conformational Sulfonamide Inhibitor
Length = 173
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 94/180 (52%), Gaps = 15/180 (8%)
Query: 52 YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
Y LFP P+WT V +++++ HIT + + +A + W IP+ F +
Sbjct: 1 YSLFPNSPKWTSKVVTYRIVSYTRD----LPHIT-VDRLVSKALNMWGKEIPLHFRKVV- 54
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSP 168
+ ADI IGF G HGD PFDG LAH+F+P + G H D E W ++ S
Sbjct: 55 WGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERW-----TDGSS 109
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYGSNPN 227
+ ++ A HE+GH LG+ HS AVMYPT D + L+ DDI+G+Q LYG N
Sbjct: 110 LGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRSN 169
>pdb|2Y6D|A Chain A, The Discovery Of Mmp7 Inhibitors Exploiting A Novel
Selectivity Trigger
Length = 174
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 94/180 (52%), Gaps = 15/180 (8%)
Query: 52 YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
Y LFP P+WT V +++++ HIT + + +A + W IP+ F +
Sbjct: 2 YSLFPNSPKWTSKVVTYRIVSYTRD----LPHIT-VDRLVSKALNMWGKEIPLHFRKVV- 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSP 168
+ ADI IGF G HGD PFDG LAH+F+P + G H D E W ++ S
Sbjct: 56 WGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERW-----TDGSS 110
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYGSNPN 227
+ ++ A HE+GH LG+ HS AVMYPT D + L+ DDI+G+Q LYG N
Sbjct: 111 LGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRSN 170
>pdb|1MMP|A Chain A, Matrilysin Complexed With Carboxylate Inhibitor
pdb|1MMP|B Chain B, Matrilysin Complexed With Carboxylate Inhibitor
pdb|1MMQ|A Chain A, Matrilysin Complexed With Hydroxamate Inhibitor
pdb|1MMR|A Chain A, Matrilysin Complexed With Sulfodiimine Inhibitor
Length = 170
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 94/180 (52%), Gaps = 15/180 (8%)
Query: 52 YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
Y LFP P+WT V +++++ HIT + + +A + W IP+ F +
Sbjct: 1 YSLFPNSPKWTSKVVTYRIVSYTRD----LPHIT-VDRLVSKALNMWGKEIPLHFRKVV- 54
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSP 168
+ ADI IGF G HGD PFDG LAH+F+P + G H D E W ++ S
Sbjct: 55 WGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERW-----TDGSS 109
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYGSNPN 227
+ ++ A HE+GH LG+ HS AVMYPT D + L+ DDI+G+Q LYG N
Sbjct: 110 LGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRSN 169
>pdb|1CGL|A Chain A, Structure Of The Catalytic Domain Of Fibroblast
Collagenase Complexed With An Inhibitor
pdb|1CGL|B Chain B, Structure Of The Catalytic Domain Of Fibroblast
Collagenase Complexed With An Inhibitor
Length = 169
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 90/178 (50%), Gaps = 16/178 (8%)
Query: 53 VLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDY 112
VL G PRW + L Y EN L D+ ++AF W+ V P++F + +
Sbjct: 1 VLTEGNPRWEQ---THLRYRI--ENYTPDLPRADVDHAIEKAFQLWSDVTPLTFTKVSEG 55
Query: 113 DFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPV 169
ADI I F GDH D PFDG G LAH+F P G H D E W +F
Sbjct: 56 Q-ADIMISFVRGDHRDNSPFDGPGGNLAHAFDPGPGIGGDAHFDEDERWTNNF------R 108
Query: 170 AVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPN 227
+L VA HE+GH LGL+HS A+MYP+ V LA DDI G+QA+YG + N
Sbjct: 109 EYNLHRVAAHELGHSLGLSHSTDIGALMYPSYT-FSGDVQLAQDDIDGIQAIYGRSQN 165
>pdb|1CGE|A Chain A, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
Length = 168
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 54 LFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYD 113
L G PRW + L Y EN L D+ ++AF W++V P++F + +
Sbjct: 1 LTEGNPRWEQ---THLRYRI--ENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQ 55
Query: 114 FADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVA 170
ADI I F GDH D PFDG G LAH+F P G H D E W +F
Sbjct: 56 -ADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNF------RE 108
Query: 171 VDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPN 227
+L VA HE+GH LGL+HS A+MYP+ V LA DDI G+QA+YG + N
Sbjct: 109 YNLHRVAAHELGHSLGLSHSTDIGALMYPSYT-FSGDVQLAQDDIDGIQAIYGRSQN 164
>pdb|3TT4|A Chain A, Human Mmp8 In Complex With L-Glutamate Motif Inhibitor
Length = 159
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 57 GKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFAD 116
G P+W R L+Y N L +++ K AF W+ P+ F + AD
Sbjct: 1 GNPKWER---TNLTYRI--RNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGE-AD 54
Query: 117 IRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAVDL 173
I I FY DHGD PFDG G+LAH+F P G H DA ETW + +L
Sbjct: 55 INIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT------NTSANYNL 108
Query: 174 ESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
VA HE GH LGL HS A+MYP R+ L DDI G+QA+YG
Sbjct: 109 FLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 159
>pdb|1CGF|A Chain A, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
pdb|1CGF|B Chain B, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
Length = 162
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 88/173 (50%), Gaps = 16/173 (9%)
Query: 54 LFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYD 113
L G PRW + L Y EN L D+ ++AF W++V P++F + +
Sbjct: 1 LTEGNPRWEQ---THLRYRI--ENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQ 55
Query: 114 FADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVA 170
ADI I F GDH D PFDG G LAH+F P G H D E W +F
Sbjct: 56 -ADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNF------RE 108
Query: 171 VDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYG 223
+L VA HE+GH LGL+HS A+MYP+ V LA DDI G+QA+YG
Sbjct: 109 YNLHRVAAHELGHSLGLSHSTDIGALMYPSYT-FSGDVQLAQDDIDGIQAIYG 160
>pdb|1A86|A Chain A, Mmp8 With Malonic And Aspartic Acid Based Inhibitor
pdb|1JH1|A Chain A, Crystal Structure Of Mmp-8 Complexed With A 6h-1,3,4-
Thiadiazine Derived Inhibitor
pdb|2OY2|A Chain A, Human Mmp-8 In Complex With Peptide Iag
pdb|2OY2|F Chain F, Human Mmp-8 In Complex With Peptide Iag
pdb|2OY4|A Chain A, Uninhibited Human Mmp-8
pdb|2OY4|F Chain F, Uninhibited Human Mmp-8
pdb|1A85|A Chain A, Mmp8 With Malonic And Asparagine Based Inhibitor
Length = 158
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 82/170 (48%), Gaps = 16/170 (9%)
Query: 58 KPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADI 117
P+W R L+Y N L +++ K AF W+ P+ F + ADI
Sbjct: 1 NPKWER---TNLTYRI--RNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGE-ADI 54
Query: 118 RIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAVDLE 174
I FY DHGD PFDG G+LAH+F P G H DA ETW + +L
Sbjct: 55 NIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT------NTSANYNLF 108
Query: 175 SVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
VA HE GH LGL HS A+MYP R+ L DDI G+QA+YG
Sbjct: 109 LVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 158
>pdb|2Y6C|A Chain A, The Discovery Of Mmp7 Inhibitors Exploiting A Novel
Selectivity Trigger
Length = 165
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 92/175 (52%), Gaps = 15/175 (8%)
Query: 52 YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
Y LFP P+WT V +++++ HIT + + +A + W IP+ F +
Sbjct: 2 YSLFPNSPKWTSKVVTYRIVSYTRD----LPHIT-VDRLVSKALNMWGKEIPLHFRKVV- 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSP 168
+ ADI IGF G HGD PFDG LAH+F+P + G H D E W ++ S
Sbjct: 56 WGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERW-----TDGSS 110
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALY 222
+ ++ A HE+GH LG+ HS AVMYPT D + L+ DDI+G+Q LY
Sbjct: 111 LGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLY 165
>pdb|3SHI|A Chain A, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
pdb|3SHI|G Chain G, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
pdb|3SHI|M Chain M, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
Length = 156
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 58 KPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADI 117
PRW + L+Y EN L D+ ++AF W++V P++F + + ADI
Sbjct: 1 NPRWEQ---THLTYRI--ENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQ-ADI 54
Query: 118 RIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAVDLE 174
I F GDH D PFDG G LAH+F P G H D E W +F +L
Sbjct: 55 MISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNF------REYNLH 108
Query: 175 SVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYG 223
VA HE+GH LGL+HS A+MYP+ V LA DDI G+QA+YG
Sbjct: 109 RVAAHELGHSLGLSHSTDIGALMYPSYT-FSGDVQLAQDDIDGIQAIYG 156
>pdb|2XS4|A Chain A, Structure Of Karilysin Catalytic Mmp Domain In Complex
With Magnesium
Length = 167
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 88/153 (57%), Gaps = 14/153 (9%)
Query: 77 NMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVL 136
N ++L T+ + + AF+ W+ +SFI+ + + ADI+I + G+HGDG PFDG
Sbjct: 19 NSSSHLTTTERENAIRSAFALWSDKSTLSFIQVYNPNQADIKIKWEKGNHGDGYPFDGNT 78
Query: 137 GVLAHSFSPE------SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHS 190
G+LAH+F P +G H D E W+++ GS +DL +VA HEIGHLLG+ HS
Sbjct: 79 GILAHAFYPPPAGGNYAGHLHFDDDENWSIN-GS-----GIDLITVAAHEIGHLLGIEHS 132
Query: 191 PVKEAVMYPTLKPRDKKVDLALDDIQGVQALYG 223
V A+MYP +++D DD V LYG
Sbjct: 133 NVSSALMYPYYTGIKRQLD--NDDCLAVWDLYG 163
>pdb|2XS3|A Chain A, Structure Of Karilysin Catalytic Mmp Domain
pdb|2XS3|B Chain B, Structure Of Karilysin Catalytic Mmp Domain
Length = 166
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 88/153 (57%), Gaps = 14/153 (9%)
Query: 77 NMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVL 136
N ++L T+ + + AF+ W+ +SFI+ + + ADI+I + G+HGDG PFDG
Sbjct: 19 NSSSHLTTTERENAIRSAFALWSDKSTLSFIQVYNPNQADIKIKWEKGNHGDGYPFDGNT 78
Query: 137 GVLAHSFSPE------SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHS 190
G+LAH+F P +G H D E W+++ GS +DL +VA HEIGHLLG+ HS
Sbjct: 79 GILAHAFYPPPAGGNYAGHLHFDDDENWSIN-GS-----GIDLITVAAHEIGHLLGIEHS 132
Query: 191 PVKEAVMYPTLKPRDKKVDLALDDIQGVQALYG 223
V A+MYP +++D DD V LYG
Sbjct: 133 NVSSALMYPYYTGIKRQLD--NDDCLAVWDLYG 163
>pdb|2K2G|A Chain A, Solution Structure Of The Wild-Type Catalytic Domain Of
Human Matrix Metalloproteinase 12 (Mmp-12) In Complex
With A Tight-Binding Inhibitor
Length = 165
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 56 PGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFA 115
PG P W +H + N ++ D+ ++AF W++V P+ F + + A
Sbjct: 6 PGGPVWRKHY-----ITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMA 59
Query: 116 DIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVD 172
DI + F G HGD FDG G+LAH+F P S G H D E W G +
Sbjct: 60 DILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTN 113
Query: 173 LESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
L AVHEIGH LGL HS +AVM+PT K D L+ DDI+G+Q+LYG
Sbjct: 114 LFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 165
>pdb|2Z2D|A Chain A, Solution Structure Of Human Macrophage Elastase (Mmp-12)
Catalytic Domain Complexed With A Gamma-Keto Butanoic
Acid Inhibitor
Length = 164
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 56 PGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFA 115
PG P W +H + N ++ D+ ++AF W++V P+ F + + A
Sbjct: 5 PGGPVWRKHY-----ITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMA 58
Query: 116 DIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVD 172
DI + F G HGD FDG G+LAH+F P S G H D E W G +
Sbjct: 59 DILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTN 112
Query: 173 LESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
L AVHEIGH LGL HS +AVM+PT K D L+ DDI+G+Q+LYG
Sbjct: 113 LFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 164
>pdb|1JIZ|A Chain A, Crystal Structure Analysis Of Human Macrophage Elastase
Mmp- 12
pdb|1JIZ|B Chain B, Crystal Structure Analysis Of Human Macrophage Elastase
Mmp- 12
Length = 166
Score = 103 bits (257), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 56 PGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFA 115
PG P W +H + N ++ D+ ++AF W++V P+ F + + A
Sbjct: 6 PGGPVWRKHY-----ITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMA 59
Query: 116 DIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVD 172
DI + F G HGD FDG G+LAH+F P S G H D E W G +
Sbjct: 60 DILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTN 113
Query: 173 LESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
L AVHEIGH LGL HS +AVM+PT K D L+ DDI+G+Q+LYG
Sbjct: 114 LFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 165
>pdb|3AYU|A Chain A, Crystal Structure Of Mmp-2 Active Site Mutant In Complex
With App- Drived Decapeptide Inhibitor
Length = 167
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 95/182 (52%), Gaps = 21/182 (11%)
Query: 52 YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAV---FKRAFSKWASVIPVSFIE 108
Y FP KP+W ++ ++Y +I Y D + V F RAF W+ V P+ F
Sbjct: 1 YNFFPRKPKWDKN---QITY-----RIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSR 52
Query: 109 TDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSE 165
D + ADI I F +HGDG PFDG G+LAH+F+P + G H D E W + G
Sbjct: 53 IHDGE-ADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGKG-- 109
Query: 166 KSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSN 225
V L VA H GH +GL HS A+M P + K L+ DDI+G+Q LYG++
Sbjct: 110 ---VGYSLFLVAAHAFGHAMGLEHSQDPGALMAP-IYTYTKNFRLSQDDIKGIQELYGAS 165
Query: 226 PN 227
P+
Sbjct: 166 PD 167
>pdb|2POJ|A Chain A, Nmr Solution Structure Of The Inhibitor-Free State Of
Macrophage Metalloelastase (Mmp-12)
Length = 164
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 56 PGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFA 115
PG P W +H + N ++ D+ ++AF W++V P+ F + + A
Sbjct: 5 PGGPVWRKHY-----ITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMA 58
Query: 116 DIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVD 172
DI + F G HGD FDG G+LAH+F P S G H D E W G +
Sbjct: 59 DILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTN 112
Query: 173 LESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
L AVH IGH LGL HS +AVM+PT K D L+ DDI+G+Q+LYG
Sbjct: 113 LFLTAVHAIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 164
>pdb|966C|A Chain A, Crystal Structure Of Fibroblast Collagenase-1 Complexed To
A Diphenyl-Ether Sulphone Based Hydroxamic Acid
Length = 157
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 80/151 (52%), Gaps = 11/151 (7%)
Query: 76 ENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGV 135
EN L D+ ++AF W++V P++F + + ADI I F GDH D PFDG
Sbjct: 12 ENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQ-ADIMISFVRGDHRDNSPFDGP 70
Query: 136 LGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPV 192
G LAH+F P G H D E W +F +L VA HE+GH LGL+HS
Sbjct: 71 GGNLAHAFQPGPGIGGDAHFDEDERWTNNF------REYNLHRVAAHELGHSLGLSHSTD 124
Query: 193 KEAVMYPTLKPRDKKVDLALDDIQGVQALYG 223
A+MYP+ V LA DDI G+QA+YG
Sbjct: 125 IGALMYPSYT-FSGDVQLAQDDIDGIQAIYG 154
>pdb|3BA0|A Chain A, Crystal Structure Of Full-Length Human Mmp-12
Length = 365
Score = 100 bits (250), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 99/193 (51%), Gaps = 24/193 (12%)
Query: 59 PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIR 118
P W +H ++Y + N ++ D+ ++AF W++V P+ F + + ADI
Sbjct: 2 PVWRKHY---ITYRIN--NYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADIL 55
Query: 119 IGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLES 175
+ F G HGD FDG G+LAH+F P S G H D E W G +L
Sbjct: 56 VVFARGAHGDDHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTNLFL 109
Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYGS--------NP 226
AVHEIGH LGL HS +AVM+PT K D L+ DDI+G+Q+LYG NP
Sbjct: 110 TAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGDPKENQRLPNP 169
Query: 227 NFTIGSLVESDIS 239
+ + +L + ++S
Sbjct: 170 DNSEPALCDPNLS 182
>pdb|1FLS|A Chain A, Solution Structure Of The Catalytic Fragment Of Human
Collagenase-3 (Mmp-13) Complexed With A Hydroxamic Acid
Inhibitor
pdb|1FM1|A Chain A, Solution Structure Of The Catalytic Fragment Of Human
Collagenase-3 (Mmp-13) Complexed With A Hydroxamic Acid
Inhibitor
pdb|1ZTQ|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|D Chain D, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|2E2D|A Chain A, Flexibility And Variability Of Timp Binding: X-Ray
Structure Of The Complex Between Collagenase-3MMP-13 And
Timp-2
pdb|2PJT|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|D Chain D, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
Length = 165
Score = 100 bits (248), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 93/179 (51%), Gaps = 22/179 (12%)
Query: 52 YVLFPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIE 108
Y +FP +W++ M L+Y ++NY + ++++ FK+AF W+ V P++F
Sbjct: 1 YNVFPRTLKWSK---MNLTY-----RIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTR 52
Query: 109 TDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSE 165
D ADI I F +HGD PFDG G+LAH+F P G H D ETW
Sbjct: 53 LHD-GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT------ 105
Query: 166 KSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKK-VDLALDDIQGVQALYG 223
S +L VA HE GH LGL HS A+M+P K L DD+QG+Q+LYG
Sbjct: 106 SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|3KRY|A Chain A, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|B Chain B, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|C Chain C, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|D Chain D, Crystal Structure Of Mmp-13 In Complex With Sc-78080
Length = 164
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 93/179 (51%), Gaps = 22/179 (12%)
Query: 52 YVLFPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIE 108
Y +FP +W++ M L+Y ++NY + ++++ FK+AF W+ V P++F
Sbjct: 1 YNVFPRTLKWSK---MNLTY-----RIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTR 52
Query: 109 TDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSE 165
D ADI I F +HGD PFDG G+LAH+F P G H D ETW
Sbjct: 53 LHD-GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT------ 105
Query: 166 KSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKK-VDLALDDIQGVQALYG 223
S +L VA HE GH LGL HS A+M+P K L DD+QG+Q+LYG
Sbjct: 106 SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|2D1N|A Chain A, Collagenase-3 (Mmp-13) Complexed To A Hydroxamic Acid
Inhibitor
pdb|2D1N|B Chain B, Collagenase-3 (Mmp-13) Complexed To A Hydroxamic Acid
Inhibitor
Length = 166
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 93/179 (51%), Gaps = 22/179 (12%)
Query: 52 YVLFPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIE 108
Y +FP +W++ M L+Y ++NY + ++++ FK+AF W+ V P++F
Sbjct: 1 YNVFPRTLKWSK---MNLTY-----RIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTR 52
Query: 109 TDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSE 165
D ADI I F +HGD PFDG G+LAH+F P G H D ETW
Sbjct: 53 LHD-GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT------ 105
Query: 166 KSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKK-VDLALDDIQGVQALYG 223
S +L VA HE GH LGL HS A+M+P K L DD+QG+Q+LYG
Sbjct: 106 SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|2OW9|A Chain A, Crystal Structure Analysis Of The Mmp13 Catalytic Domain
In Complex With Specific Inhibitor
pdb|2OW9|B Chain B, Crystal Structure Analysis Of The Mmp13 Catalytic Domain
In Complex With Specific Inhibitor
pdb|2OZR|A Chain A, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|B Chain B, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|C Chain C, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|D Chain D, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|E Chain E, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|F Chain F, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|G Chain G, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|H Chain H, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
Length = 170
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 93/179 (51%), Gaps = 22/179 (12%)
Query: 52 YVLFPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIE 108
Y +FP +W++ M L+Y ++NY + ++++ FK+AF W+ V P++F
Sbjct: 4 YNVFPRTLKWSK---MNLTY-----RIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTR 55
Query: 109 TDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSE 165
D ADI I F +HGD PFDG G+LAH+F P G H D ETW
Sbjct: 56 LHD-GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT------ 108
Query: 166 KSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKK-VDLALDDIQGVQALYG 223
S +L VA HE GH LGL HS A+M+P K L DD+QG+Q+LYG
Sbjct: 109 SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 167
>pdb|456C|A Chain A, Crystal Structure Of Collagenase-3 (Mmp-13) Complexed To A
Diphenyl-Ether Sulphone Based Hydroxamic Acid
pdb|456C|B Chain B, Crystal Structure Of Collagenase-3 (Mmp-13) Complexed To A
Diphenyl-Ether Sulphone Based Hydroxamic Acid
pdb|830C|A Chain A, Collagenase-3 (Mmp-13) Complexed To A Sulphone-Based
Hydroxamic Acid
pdb|830C|B Chain B, Collagenase-3 (Mmp-13) Complexed To A Sulphone-Based
Hydroxamic Acid
pdb|1YOU|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With A Potent Pyrimidinetrione Inhibitor
pdb|1YOU|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With A Potent Pyrimidinetrione Inhibitor
Length = 168
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 93/179 (51%), Gaps = 22/179 (12%)
Query: 52 YVLFPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIE 108
Y +FP +W++ M L+Y ++NY + ++++ FK+AF W+ V P++F
Sbjct: 1 YNVFPRTLKWSK---MNLTY-----RIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTR 52
Query: 109 TDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSE 165
D ADI I F +HGD PFDG G+LAH+F P G H D ETW
Sbjct: 53 LHD-GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT------ 105
Query: 166 KSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKK-VDLALDDIQGVQALYG 223
S +L VA HE GH LGL HS A+M+P K L DD+QG+Q+LYG
Sbjct: 106 SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|3KEC|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
Phenyl-2h-Tetrazole Compound
pdb|3KEC|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
Phenyl-2h-Tetrazole Compound
pdb|3KEJ|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEJ|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEK|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEK|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
Length = 167
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 93/179 (51%), Gaps = 22/179 (12%)
Query: 52 YVLFPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIE 108
Y +FP +W++ M L+Y ++NY + ++++ FK+AF W+ V P++F
Sbjct: 1 YNVFPRTLKWSK---MNLTY-----RIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTR 52
Query: 109 TDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSE 165
D ADI I F +HGD PFDG G+LAH+F P G H D ETW
Sbjct: 53 LHD-GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT------ 105
Query: 166 KSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKK-VDLALDDIQGVQALYG 223
S +L VA HE GH LGL HS A+M+P K L DD+QG+Q+LYG
Sbjct: 106 SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|1OS2|A Chain A, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|B Chain B, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|C Chain C, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|D Chain D, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|E Chain E, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|F Chain F, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS9|A Chain A, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|B Chain B, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|C Chain C, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|D Chain D, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|E Chain E, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|F Chain F, Binary Enzyme-Product Complexes Of Human Mmp12
Length = 165
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 89/169 (52%), Gaps = 16/169 (9%)
Query: 59 PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIR 118
P W +H ++Y + N ++ D+ ++AF W++V P+ F + + ADI
Sbjct: 4 PVWRKHY---ITYRIN--NYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADIL 57
Query: 119 IGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLES 175
+ F G HGD FDG G+LAH+F P S G H D E W G +L
Sbjct: 58 VVFARGAHGDDHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTNLFL 111
Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
AVHEIGH LGL HS +AVM+PT K D L+ DDI+G+Q+LYG
Sbjct: 112 TAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 160
>pdb|1EUB|A Chain A, Solution Structure Of The Catalytic Domain Of Human
Collagenase-3 (Mmp-13) Complexed To A Potent
Non-Peptidic Sulfonamide Inhibitor
pdb|1XUC|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUC|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUD|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUD|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUR|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUR|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|3ELM|A Chain A, Crystal Structure Of Mmp-13 Complexed With Inhibitor 24f
pdb|3ELM|B Chain B, Crystal Structure Of Mmp-13 Complexed With Inhibitor 24f
pdb|3I7G|A Chain A, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7G|B Chain B, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7I|A Chain A, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7I|B Chain B, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|2YIG|A Chain A, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor
pdb|2YIG|B Chain B, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor
pdb|3ZXH|A Chain A, Mmp-13 Complexed With 2-Napthylsulfonamide Hydroxamic Acid
Inhibitor
pdb|3ZXH|B Chain B, Mmp-13 Complexed With 2-Napthylsulfonamide Hydroxamic Acid
Inhibitor
Length = 171
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 93/179 (51%), Gaps = 22/179 (12%)
Query: 52 YVLFPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIE 108
Y +FP +W++ M L+Y ++NY + ++++ FK+AF W+ V P++F
Sbjct: 1 YNVFPRTLKWSK---MNLTY-----RIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTR 52
Query: 109 TDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSE 165
D ADI I F +HGD PFDG G+LAH+F P G H D ETW
Sbjct: 53 LHD-GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT------ 105
Query: 166 KSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKK-VDLALDDIQGVQALYG 223
S +L VA HE GH LGL HS A+M+P K L DD+QG+Q+LYG
Sbjct: 106 SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|4A7B|A Chain A, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor Cmpd22
pdb|4A7B|B Chain B, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor Cmpd22
pdb|3TVC|A Chain A, Human Mmp13 In Complex With L-Glutamate Motif Inhibitor
Length = 169
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 93/179 (51%), Gaps = 22/179 (12%)
Query: 52 YVLFPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIE 108
Y +FP +W++ M L+Y ++NY + ++++ FK+AF W+ V P++F
Sbjct: 1 YNVFPRTLKWSK---MNLTY-----RIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTR 52
Query: 109 TDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSE 165
D ADI I F +HGD PFDG G+LAH+F P G H D ETW
Sbjct: 53 LHD-GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT------ 105
Query: 166 KSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKK-VDLALDDIQGVQALYG 223
S +L VA HE GH LGL HS A+M+P K L DD+QG+Q+LYG
Sbjct: 106 SSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|1RMZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor Nngh At 1.3 A Resolution
pdb|2HU6|A Chain A, Crystal Structure Of Human Mmp-12 In Complex With
Acetohydroxamic Acid And A Bicyclic Inhibitor
pdb|2OXU|A Chain A, Uninhibited Form Of Human Mmp-12
pdb|2OXW|A Chain A, Human Mmp-12 Complexed With The Peptide Iag
pdb|2OXZ|A Chain A, Human Mmp-12 In Complex With Two Peptides Pqg And Iag
pdb|1YCM|A Chain A, Solution Structure Of Matrix Metalloproteinase 12 (Mmp12)
In The Presence Of N-Isobutyl-N-[4-
Methoxyphenylsulfonyl]glycyl Hydroxamic Acid (Nngh)
pdb|1Z3J|A Chain A, Solution Structure Of Mmp12 In The Presence Of
N-Isobutyl-N- 4-Methoxyphenylsulfonyl]glycyl Hydroxamic
Acid (Nngh)
pdb|1Y93|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With Acetohydroxamic Acid At Atomic Resolution
pdb|3LIK|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LIL|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LIR|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LJG|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3TS4|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|3TSK|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|4EFS|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|4GQL|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470.1
pdb|4GR0|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470b
pdb|4GR3|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470a
Length = 159
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 59 PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIR 118
P W +H + N ++ D+ ++AF W++V P+ F + + ADI
Sbjct: 3 PVWRKHY-----ITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADIL 56
Query: 119 IGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLES 175
+ F G HGD FDG G+LAH+F P S G H D E W G +L
Sbjct: 57 VVFARGAHGDDHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTNLFL 110
Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
AVHEIGH LGL HS +AVM+PT K D L+ DDI+G+Q+LYG
Sbjct: 111 TAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 159
>pdb|3F15|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
(S)-N-(2,3-Dihydroxypropyl)-4-
Methoxy-N-(2-Nitroso-2-Oxoethyl)benzenesulfonamide
pdb|3F16|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
(R)-N-(3-Hydroxy-1-Nitroso-1-
Oxopropan-2-Yl)-4-Methoxybenzenesulfonamide
pdb|3F17|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor N-(2-Nitroso-2-Oxoethyl)
Biphenyl-4-Sulfonamide
pdb|3F18|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
4-Fluoro-N-(2-Hydroxyethyl)-N-
(2-Nitroso-2-Oxoethyl)benzenesulfonamide
pdb|3F19|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor 4-Fluoro-N-(2-Nitroso-2-
Oxoethyl)benzenesulfonamide
pdb|3F1A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor N-(2-Nitroso-2-Oxoethyl)
Benzenesulfonamide
pdb|3EHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor (R)-2-(Biphenyl-4-
Ylsulfonamido)-4-Methylpentanoic Acid
pdb|3EHY|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor (R)-2-(4-
Methoxyphenylsulfonamido)propanoic Acid
pdb|3LKA|A Chain A, Catalytic Domain Of Human Mmp-12 Complexed With Hydroxamic
Acid And Paramethoxy-Sulfonyl Amide
pdb|3NX7|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(N-(2-Hydroxyethyl)4-
Methoxyphenylsulfonamido)acetamide
pdb|3LK8|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
Paramethoxy-Sulfonyl-Glycine Hydroxamate
pdb|3N2U|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(4-Methoxy-N(2-(3,4,5-Trihydroxy-6-
(Hydroxymethyl)tetrahydro-2h-Pyran-2-
Yloxy)ethyl)phenylsulfonamido) Acetamide
pdb|3N2V|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(N-Hydroxyethyl)biphenyl-4-
Ylsulfonamido)acetamide
pdb|3RTS|A Chain A, Human Mmp-12 Catalytic Domain In Complex
WithN-Hydroxy-2-(2- Phenylethylsulfonamido)acetamide
pdb|3RTT|A Chain A, Human Mmp-12 Catalytic Domain In Complex
With(R)-N-Hydroxy-1-
(Phenethylsulfonyl)pyrrolidine-2-Carboxamide
pdb|4GUY|A Chain A, Human Mmp12 Catalytic Domain In Complex
WithN-Hydroxy-2-(2-(4-
Methoxyphenyl)ethylsulfonamido)acetamide
Length = 158
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 59 PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIR 118
P W +H + N ++ D+ ++AF W++V P+ F + + ADI
Sbjct: 2 PVWRKHY-----ITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADIL 55
Query: 119 IGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLES 175
+ F G HGD FDG G+LAH+F P S G H D E W G +L
Sbjct: 56 VVFARGAHGDDHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTNLFL 109
Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
AVHEIGH LGL HS +AVM+PT K D L+ DDI+G+Q+LYG
Sbjct: 110 TAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 158
>pdb|2WO8|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
Length = 164
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 89/169 (52%), Gaps = 16/169 (9%)
Query: 59 PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIR 118
P W +H ++Y + N ++ D+ ++AF W++V P+ F + + ADI
Sbjct: 3 PVWRKHY---ITYRIN--NYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADIL 56
Query: 119 IGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLES 175
+ F G HGD FDG G+LAH+F P S G H D E W G +L
Sbjct: 57 VVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTNLFL 110
Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
AVHEIGH LGL HS +AVM+PT K D L+ DDI+G+Q+LYG
Sbjct: 111 TAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 159
>pdb|1ROS|A Chain A, Crystal Structure Of Mmp-12 Complexed To 2-(1,3-Dioxo-1,3-
Dihydro-2h-Isoindol-2-Yl)ethyl-4-(4-Ethoxy[1,
1-Biphenyl]-4- Yl)-4-Oxobutanoic Acid
pdb|1ROS|B Chain B, Crystal Structure Of Mmp-12 Complexed To 2-(1,3-Dioxo-1,3-
Dihydro-2h-Isoindol-2-Yl)ethyl-4-(4-Ethoxy[1,
1-Biphenyl]-4- Yl)-4-Oxobutanoic Acid
Length = 163
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 89/169 (52%), Gaps = 16/169 (9%)
Query: 59 PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIR 118
P W +H ++Y + N ++ D+ ++AF W++V P+ F + + ADI
Sbjct: 2 PVWRKHY---ITYRIN--NYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADIL 55
Query: 119 IGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLES 175
+ F G HGD FDG G+LAH+F P S G H D E W G +L
Sbjct: 56 VVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTNLFL 109
Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
AVHEIGH LGL HS +AVM+PT K D L+ DDI+G+Q+LYG
Sbjct: 110 TAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 158
>pdb|1QIB|A Chain A, Crystal Structure Of Gelatinase A Catalytic Domain
Length = 161
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 93/175 (53%), Gaps = 21/175 (12%)
Query: 58 KPRWTRHVPMTLSYAFSKENMINYLHITDIKAV---FKRAFSKWASVIPVSFIETDDYDF 114
KP+W ++ ++Y +I Y D + V F RAF W+ V P+ F D +
Sbjct: 2 KPKWDKN---QITY-----RIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGE- 52
Query: 115 ADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAV 171
ADI I F +HGDG PFDG G+LAH+F+P + G H D E W++ G V
Sbjct: 53 ADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWSLGKG-----VGY 107
Query: 172 DLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNP 226
L VA HE GH +GL HS A+M P + K L+ DDI+G+Q LYG++P
Sbjct: 108 SLFLVAAHEFGHAMGLEHSQDPGALMAP-IYTYTKNFRLSQDDIKGIQELYGASP 161
>pdb|2K9C|A Chain A, Paramagnetic Shifts In Solid-State Nmr Of Proteins To
Elicit Structural Information
pdb|2KRJ|A Chain A, High-Resolution Solid-State Nmr Structure Of A 17.6 Kda
Prot
Length = 152
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 78/142 (54%), Gaps = 11/142 (7%)
Query: 86 DIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSP 145
D+ ++AF W++V P+ F + + ADI + F G HGD FDG G+LAH+F P
Sbjct: 18 DVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDDHAFDGKGGILAHAFGP 76
Query: 146 ES---GKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLK 202
S G H D E W G +L AVHEIGH LGL HS +AVM+PT K
Sbjct: 77 GSGIGGDAHFDEDEFWTTHSG------GTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYK 130
Query: 203 PRD-KKVDLALDDIQGVQALYG 223
D L+ DDI+G+Q+LYG
Sbjct: 131 YVDINTFRLSADDIRGIQSLYG 152
>pdb|1HOV|A Chain A, Solution Structure Of A Catalytic Domain Of Mmp-2
Complexed With Sc-74020
Length = 163
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 90/178 (50%), Gaps = 22/178 (12%)
Query: 52 YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAV---FKRAFSKWASVIPVSFIE 108
Y FP KP+W ++ ++Y +I Y D + V F RAF W+ V P+ F
Sbjct: 2 YNFFPRKPKWDKN---QITY-----RIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSR 53
Query: 109 TDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSE 165
D + ADI I F +HGDG PFDG G+LAH+F+P + G H D E W
Sbjct: 54 IHDGE-ADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWT------ 106
Query: 166 KSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYG 223
+ L VA HE GH +GL HS A+M P + K L+ DDI+G+Q LYG
Sbjct: 107 NTSANYSLFLVAAHEFGHAMGLEHSQDPGALMAP-IYTYTKNFRLSQDDIKGIQELYG 163
>pdb|1UTT|A Chain A, Crystal Structure Of Mmp-12 Complexed To 2-
(1,3-Dioxo-1,3-Dihydro-2h-Isoindol-2-Yl)ethyl-4-
(4-Ethoxy[1,1-Biphenyl]-4-Yl)-4-Oxobutanoic Acid
pdb|1UTZ|A Chain A, Crystal Structure Of Mmp-12 Complexed To
(2r)-3-({[4-[(Pyri
Din-4-Yl)phenyl]-Thien-2-
Yl}carboxamido)(Phenyl)propanoic Acid
pdb|1UTZ|B Chain B, Crystal Structure Of Mmp-12 Complexed To
(2r)-3-({[4-[(Pyri
Din-4-Yl)phenyl]-Thien-2-
Yl}carboxamido)(Phenyl)propanoic Acid
Length = 159
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 59 PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIR 118
P W +H + N ++ D+ ++AF W++V P+ F + + ADI
Sbjct: 2 PVWRKHY-----ITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADIL 55
Query: 119 IGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLES 175
+ F G HGD FDG G+LAH+F P S G H D E W G +L
Sbjct: 56 VVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTNLFL 109
Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
AVHEIGH LGL HS +AVM+PT K D L+ DDI+G+Q+LYG
Sbjct: 110 TAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 158
>pdb|3LJZ|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|C Chain C, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|D Chain D, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3O2X|A Chain A, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|B Chain B, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|C Chain C, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|D Chain D, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
Length = 164
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 92/177 (51%), Gaps = 22/177 (12%)
Query: 54 LFPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETD 110
+FP +W++ M L+Y ++NY + ++++ FK+AF W+ V P++F
Sbjct: 3 VFPRTLKWSK---MNLTY-----RIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLH 54
Query: 111 DYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKS 167
D ADI I F +HGD PFDG G+LAH+F P G H D ETW S
Sbjct: 55 D-GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT------SS 107
Query: 168 PVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKK-VDLALDDIQGVQALYG 223
+L VA HE GH LGL HS A+M+P K L DD+QG+Q+LYG
Sbjct: 108 SKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|4GR8|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470c
Length = 152
Score = 97.1 bits (240), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 77/141 (54%), Gaps = 11/141 (7%)
Query: 86 DIKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSP 145
D+ ++AF W++V P+ F + + ADI + F G HGD FDG G+LAH+F P
Sbjct: 19 DVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDDHAFDGKGGILAHAFGP 77
Query: 146 ES---GKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLK 202
S G H D E W G +L AVHEIGH LGL HS +AVM+PT K
Sbjct: 78 GSGIGGDAHFDEDEFWTTHSG------GTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYK 131
Query: 203 PRD-KKVDLALDDIQGVQALY 222
D L+ DDI+G+Q+LY
Sbjct: 132 YVDINTFRLSADDIRGIQSLY 152
>pdb|1JK3|A Chain A, Crystal Structure Of Human Mmp-12 (Macrophage Elastase) At
True Atomic Resolution
Length = 158
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 59 PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIR 118
P W +H + N ++ D+ ++AF W++V P+ F + + ADI
Sbjct: 2 PVWRKHY-----ITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADIL 55
Query: 119 IGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLES 175
+ F G HGD FDG G+LAH+F P S G H D E W G +L
Sbjct: 56 VVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTNLFL 109
Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
AVH IGH LGL HS +AVM+PT K D L+ DDI+G+Q+LYG
Sbjct: 110 TAVHAIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 158
>pdb|2W0D|A Chain A, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|B Chain B, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|C Chain C, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|D Chain D, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|3UVC|A Chain A, Mmp12 In A Complex With The Dimeric Adduct:
5-(5-Phenylhydantoin)-5- Phenylhydantoin
pdb|3UVC|B Chain B, Mmp12 In A Complex With The Dimeric Adduct:
5-(5-Phenylhydantoin)-5- Phenylhydantoin
Length = 164
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 59 PRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDFADIR 118
P W +H + N ++ D+ ++AF W++V P+ F + + ADI
Sbjct: 3 PVWRKHY-----ITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADIL 56
Query: 119 IGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGSEKSPVAVDLES 175
+ F G HGD FDG G+LAH+F P S G H D E W G +L
Sbjct: 57 VVFARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSG------GTNLFL 110
Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
AVH IGH LGL HS +AVM+PT K D L+ DDI+G+Q+LYG
Sbjct: 111 TAVHAIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 159
>pdb|1CXV|A Chain A, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
pdb|1CXV|B Chain B, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
Length = 164
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 92/179 (51%), Gaps = 22/179 (12%)
Query: 52 YVLFPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIE 108
Y +FP +W++ L+Y ++NY + ++++ F++AF W+ V P++F
Sbjct: 1 YNVFPRTLKWSQ---TNLTY-----RIVNYTPDMSHSEVEKAFRKAFKVWSDVTPLNFTR 52
Query: 109 TDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSE 165
D ADI I F +HGD PFDG G+LAH+F P G H D ETW
Sbjct: 53 IYD-GTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT------ 105
Query: 166 KSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKK-VDLALDDIQGVQALYG 223
S +L VA HE+GH LGL HS A+M+P K L DD+QG+Q LYG
Sbjct: 106 SSSKGYNLFIVAAHELGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQFLYG 164
>pdb|1GKC|A Chain A, Mmp9-inhibitor Complex
pdb|1GKC|B Chain B, Mmp9-inhibitor Complex
Length = 163
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 86/171 (50%), Gaps = 15/171 (8%)
Query: 55 FPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDF 114
F G +W H + + +N L I F RAF+ W++V P++F D
Sbjct: 5 FEGDLKWHHH-----NITYWIQNYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRD- 58
Query: 115 ADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAV 171
ADI I F +HGDG PFDG G+LAH+F P G H D E W++ G S
Sbjct: 59 ADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPGIQGDAHFDDDELWSLGKGQGYS---- 114
Query: 172 DLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALY 222
L VA HE GH LGL HS V EA+MYP + + L DD+ G++ LY
Sbjct: 115 -LFLVAAHEFGHALGLDHSSVPEALMYPMYRFTEGP-PLHKDDVNGIRHLY 163
>pdb|1SLM|A Chain A, Crystal Structure Of Fibroblast Stromelysin-1: The
C-Truncated Human Proenzyme
Length = 255
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 55 FPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDD 111
FPG P+W + L+Y ++NY L + + ++A W V P++F +
Sbjct: 86 FPGIPKWRK---THLTY-----RIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 137
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
+ ADI I F +HGD PFDG VLAH+++P +G H D E W K
Sbjct: 138 GE-ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT------KDT 190
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD--KKVDLALDDIQGVQALYGSNP 226
+L VA HEIGH LGL HS EA+MYP + L+ DDI G+Q+LYG P
Sbjct: 191 TGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPP 250
Query: 227 N 227
+
Sbjct: 251 D 251
>pdb|1BIW|A Chain A, Design And Synthesis Of Conformationally-Constrained Mmp
Inhibitors
pdb|1BIW|B Chain B, Design And Synthesis Of Conformationally-Constrained Mmp
Inhibitors
pdb|1BQO|A Chain A, Discovery Of Potent, Achiral Matrix Metalloproteinase
Inhibitors
pdb|1BQO|B Chain B, Discovery Of Potent, Achiral Matrix Metalloproteinase
Inhibitors
pdb|1B3D|A Chain A, Stromelysin-1
pdb|1B3D|B Chain B, Stromelysin-1
pdb|1CQR|A Chain A, Crystal Structure Of The Stromelysin Catalytic Domain At
2.0 A Resolution
pdb|1CQR|B Chain B, Crystal Structure Of The Stromelysin Catalytic Domain At
2.0 A Resolution
pdb|1C3I|A Chain A, Human Stromelysin-1 Catalytic Domain Complexed With
Ro-26-2812
pdb|1C3I|B Chain B, Human Stromelysin-1 Catalytic Domain Complexed With
Ro-26-2812
pdb|1D8M|A Chain A, Crystal Structure Of Mmp3 Complexed With A Heterocycle-
Based Inhibitor
pdb|1D8M|B Chain B, Crystal Structure Of Mmp3 Complexed With A Heterocycle-
Based Inhibitor
pdb|1D7X|A Chain A, Crystal Structure Of Mmp3 Complexed With A Modified
Proline Scaffold Based Inhibitor.
pdb|1D7X|B Chain B, Crystal Structure Of Mmp3 Complexed With A Modified
Proline Scaffold Based Inhibitor.
pdb|1D8F|A Chain A, Crystal Structure Of Mmp3 Complexed With A Piperazine
Based Inhibitor.
pdb|1D8F|B Chain B, Crystal Structure Of Mmp3 Complexed With A Piperazine
Based Inhibitor.
pdb|1D5J|A Chain A, Crystal Structure Of Mmp3 Complexed With A Thiazepine
Based Inhibitor.
pdb|1D5J|B Chain B, Crystal Structure Of Mmp3 Complexed With A Thiazepine
Based Inhibitor.
pdb|1G49|A Chain A, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1G49|B Chain B, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1G05|A Chain A, Heterocycle-Based Mmp Inhibitor With P2'substituents
pdb|1G05|B Chain B, Heterocycle-Based Mmp Inhibitor With P2'substituents
pdb|1HY7|A Chain A, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1HY7|B Chain B, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1BM6|A Chain A, Solution Structure Of The Catalytic Domain Of Human
Stromelysin-1 Complexed To A Potent Non-Peptidic
Inhibitor, Nmr, 20 Structures
pdb|2SRT|A Chain A, Catalytic Domain Of Human Stromelysin-1 At Ph 5.5 And 40oc
Complexed With Inhibitor
pdb|1SLN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With The
N-Carboxy-Alkyl Inhibitor L-702,842
pdb|4DPE|A Chain A, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor.
pdb|4DPE|B Chain B, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor.
pdb|4JA1|A Chain A, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor
pdb|4JA1|B Chain B, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor
Length = 173
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 55 FPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDD 111
FPG P+W + L+Y ++NY L + + ++A W V P++F +
Sbjct: 4 FPGIPKWRK---THLTY-----RIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
+ ADI I F +HGD PFDG VLAH+++P +G H D E W K
Sbjct: 56 GE-ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT------KDT 108
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD--KKVDLALDDIQGVQALYGSNP 226
+L VA HEIGH LGL HS EA+MYP + L+ DDI G+Q+LYG P
Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPP 168
Query: 227 N 227
+
Sbjct: 169 D 169
>pdb|2D1O|A Chain A, Stromelysin-1 (Mmp-3) Complexed To A Hydroxamic Acid
Inhibitor
pdb|2D1O|B Chain B, Stromelysin-1 (Mmp-3) Complexed To A Hydroxamic Acid
Inhibitor
Length = 171
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 55 FPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDD 111
FPG P+W + L+Y ++NY L + + ++A W V P++F +
Sbjct: 4 FPGIPKWRK---THLTY-----RIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
+ ADI I F +HGD PFDG VLAH+++P +G H D E W K
Sbjct: 56 GE-ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT------KDT 108
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD--KKVDLALDDIQGVQALYGSNP 226
+L VA HEIGH LGL HS EA+MYP + L+ DDI G+Q+LYG P
Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPP 168
Query: 227 N 227
+
Sbjct: 169 D 169
>pdb|3OHO|A Chain A, Catalytic Domain Of Stromelysin-1 In Complex With
N-Hydroxy-2-(4- Methylphenylsulfonamido)acetamide
Length = 169
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 55 FPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDD 111
FPG P+W + L+Y ++NY L + + ++A W V P++F +
Sbjct: 4 FPGIPKWRK---THLTY-----RIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
+ ADI I F +HGD PFDG VLAH+++P +G H D E W K
Sbjct: 56 GE-ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT------KDT 108
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD--KKVDLALDDIQGVQALYGSNP 226
+L VA HEIGH LGL HS EA+MYP + L+ DDI G+Q+LYG P
Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPP 168
Query: 227 N 227
+
Sbjct: 169 D 169
>pdb|1UMS|A Chain A, Stromelysin-1 Catalytic Domain With Hydrophobic Inhibitor
Bound, Ph 7.0, 32oc, 20 Mm Cacl2, 15% Acetonitrile; Nmr
Ensemble Of 20 Structures
pdb|1UMT|A Chain A, Stromelysin-1 Catalytic Domain With Hydrophobic Inhibitor
Bound, Ph 7.0, 32oc, 20 Mm Cacl2, 15% Acetonitrile; Nmr
Average Of 20 Structures Minimized With Restraints
Length = 174
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 55 FPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDD 111
FPG P+W + L+Y ++NY L + + ++A W V P++F +
Sbjct: 4 FPGIPKWRK---THLTY-----RIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
+ ADI I F +HGD PFDG VLAH+++P +G H D E W K
Sbjct: 56 GE-ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT------KDT 108
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD--KKVDLALDDIQGVQALYGSNP 226
+L VA HEIGH LGL HS EA+MYP + L+ DDI G+Q+LYG P
Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPP 168
Query: 227 N 227
+
Sbjct: 169 D 169
>pdb|1CAQ|A Chain A, X-Ray Structure Of Human Stromelysin Catalytic Domain
Complexes With Non-Peptide Inhibitors: Implication For
Inhibitor Selectivity
pdb|1CIZ|A Chain A, X-ray Structure Of Human Stromelysin Catalytic Domain
Complexes With Non-peptide Inhibitors: Implication For
Inhibitor Selectivity
pdb|1G4K|A Chain A, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1G4K|B Chain B, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1G4K|C Chain C, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1OO9|A Chain A, Orientation In Solution Of Mmp-3 Catalytic Domain And N-
Timp-1 From Residual Dipolar Couplings
pdb|3USN|A Chain A, Structure Of The Catalytic Domain Of Human Fibroblast
Stromelysin-1 Inhibited With The Thiadiazole Inhibitor
Ipnu-107859, Nmr, 1 Structure
Length = 168
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 90/180 (50%), Gaps = 23/180 (12%)
Query: 55 FPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDD 111
FPG P+W + L+Y ++NY L + + ++A W V P++F +
Sbjct: 4 FPGIPKWRK---THLTY-----RIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
+ ADI I F +HGD PFDG VLAH+++P +G H D E W K
Sbjct: 56 GE-ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT------KDT 108
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD--KKVDLALDDIQGVQALYGSNP 226
+L VA HEIGH LGL HS EA+MYP + L+ DDI G+Q+LYG P
Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPP 168
>pdb|1GKD|A Chain A, Mmp9 Active Site Mutant-Inhibitor Complex
pdb|1GKD|B Chain B, Mmp9 Active Site Mutant-Inhibitor Complex
Length = 163
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 86/171 (50%), Gaps = 15/171 (8%)
Query: 55 FPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDF 114
F G +W H + + +N L I F RAF+ W++V P++F D
Sbjct: 5 FEGDLKWHHH-----NITYWIQNYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRD- 58
Query: 115 ADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAV 171
ADI I F +HGDG PFDG G+LAH+F P G H D E W++ G S
Sbjct: 59 ADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPGIQGDAHFDDDELWSLGKGQGYS---- 114
Query: 172 DLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALY 222
L VA H+ GH LGL HS V EA+MYP + + L DD+ G++ LY
Sbjct: 115 -LFLVAAHQFGHALGLDHSSVPEALMYPMYRFTEGP-PLHKDDVNGIRHLY 163
>pdb|2OVX|A Chain A, Mmp-9 Active Site Mutant With Barbiturate Inhibitor
pdb|2OVX|B Chain B, Mmp-9 Active Site Mutant With Barbiturate Inhibitor
pdb|2OVZ|A Chain A, Mmp-9 Active Site Mutant With Phosphinate Inhibitor
pdb|2OVZ|B Chain B, Mmp-9 Active Site Mutant With Phosphinate Inhibitor
pdb|2OW0|A Chain A, Mmp-9 Active Site Mutant With Iodine-Labeled Carboxylate
Inhibitor
pdb|2OW0|B Chain B, Mmp-9 Active Site Mutant With Iodine-Labeled Carboxylate
Inhibitor
pdb|2OW1|A Chain A, Mmp-9 Active Site Mutant With Trifluoromethyl Hydroxamate
Inhibitor
pdb|2OW1|B Chain B, Mmp-9 Active Site Mutant With Trifluoromethyl Hydroxamate
Inhibitor
pdb|2OW2|A Chain A, Mmp-9 Active Site Mutant With Difluoro Butanoic Acid
Inhibitor
pdb|2OW2|B Chain B, Mmp-9 Active Site Mutant With Difluoro Butanoic Acid
Inhibitor
Length = 159
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 86/171 (50%), Gaps = 15/171 (8%)
Query: 55 FPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDF 114
F G +W H + + +N L I F RAF+ W++V P++F D
Sbjct: 1 FEGDLKWHHH-----NITYWIQNYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRD- 54
Query: 115 ADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAV 171
ADI I F +HGDG PFDG G+LAH+F P G H D E W++ G S
Sbjct: 55 ADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPGIQGDAHFDDDELWSLGKGQGYS---- 110
Query: 172 DLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALY 222
L VA H+ GH LGL HS V EA+MYP + + L DD+ G++ LY
Sbjct: 111 -LFLVAAHQFGHALGLDHSSVPEALMYPMYRFTEGPP-LHKDDVNGIRHLY 159
>pdb|1C8T|A Chain A, Human Stromelysin-1 (E202q) Catalytic Domain Complexed
With Ro-26-2812
pdb|1C8T|B Chain B, Human Stromelysin-1 (E202q) Catalytic Domain Complexed
With Ro-26-2812
Length = 167
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 55 FPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDD 111
FPG P+W + L+Y ++NY L + + ++A W V P++F +
Sbjct: 1 FPGIPKWRK---THLTY-----RIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 52
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
+ ADI I F +HGD PFDG VLAH+++P +G H D E W K
Sbjct: 53 GE-ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT------KDT 105
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD--KKVDLALDDIQGVQALYGSNP 226
+L VA H+IGH LGL HS EA+MYP + L+ DDI G+Q+LYG P
Sbjct: 106 TGTNLFLVAAHQIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPP 165
Query: 227 N 227
+
Sbjct: 166 D 166
>pdb|1USN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With Thiadiazole
Inhibitor Pnu-142372
pdb|2USN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With Thiadiazole
Inhibitor Pnu-141803
Length = 165
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 89/177 (50%), Gaps = 23/177 (12%)
Query: 55 FPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDD 111
FPG P+W + L+Y ++NY L + + ++A W V P++F +
Sbjct: 4 FPGIPKWRK---THLTY-----RIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
+ ADI I F +HGD PFDG VLAH+++P +G H D E W K
Sbjct: 56 GE-ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT------KDT 108
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD--KKVDLALDDIQGVQALYG 223
+L VA HEIGH LGL HS EA+MYP + L+ DDI G+Q+LYG
Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYG 165
>pdb|1B8Y|A Chain A, X-Ray Structure Of Human Stromelysin Catalytic Domain
Complexed With Non-Peptide Inhibitors: Implications For
Inhibitor Selectivity
pdb|3OHL|A Chain A, Catalytic Domain Of Stromelysin-1 In Complex With
N-Hydroxy-2-(4-
Methoxy-N-(Pyridine-3-
Ylmethyl)phenylsulfonamido)acetamide
Length = 167
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 89/177 (50%), Gaps = 23/177 (12%)
Query: 55 FPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDD 111
FPG P+W + L+Y ++NY L + + ++A W V P++F +
Sbjct: 4 FPGIPKWRK---THLTY-----RIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
+ ADI I F +HGD PFDG VLAH+++P +G H D E W K
Sbjct: 56 GE-ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT------KDT 108
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD--KKVDLALDDIQGVQALYG 223
+L VA HEIGH LGL HS EA+MYP + L+ DDI G+Q+LYG
Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYG 165
>pdb|1UEA|A Chain A, Mmp-3TIMP-1 Complex
pdb|1UEA|C Chain C, Mmp-3TIMP-1 Complex
Length = 173
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 90/181 (49%), Gaps = 23/181 (12%)
Query: 55 FPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDD 111
FPG P+W + L+Y ++NY L + + ++A W V P++F +
Sbjct: 4 FPGIPKWRK---THLTY-----RIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSP 168
+ ADI I F +HGD PFDG VLAH+++P +G H D E W K
Sbjct: 56 GE-ADIXISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT------KDT 108
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD--KKVDLALDDIQGVQALYGSNP 226
+L VA HEIGH LGL HS EA+ YP + L+ DDI G+Q+LYG P
Sbjct: 109 TGTNLFLVAAHEIGHSLGLFHSANTEALXYPLYHSLTDLTRFRLSQDDINGIQSLYGPPP 168
Query: 227 N 227
+
Sbjct: 169 D 169
>pdb|1HV5|A Chain A, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|B Chain B, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|C Chain C, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|D Chain D, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|E Chain E, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|F Chain F, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
Length = 165
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 75/140 (53%), Gaps = 10/140 (7%)
Query: 87 IKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE 146
++ A W+ V P++F E + ADI I F HGD PFDG G+LAH+F P+
Sbjct: 30 VRQTVAEALQVWSEVTPLTFTEVHE-GRADIMIDFARYWHGDNLPFDGPGGILAHAFFPK 88
Query: 147 S---GKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKP 203
+ G H D ETW + G + DL VA HE GH+LGL H+ +A+M P
Sbjct: 89 THREGDVHFDYDETWTI--GDNQ---GTDLLQVAAHEFGHVLGLQHTTAAKALMSPFYTF 143
Query: 204 RDKKVDLALDDIQGVQALYG 223
R + L+ DD +G+Q LYG
Sbjct: 144 R-YPLSLSPDDRRGIQHLYG 162
>pdb|1QIA|A Chain A, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|B Chain B, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|C Chain C, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|D Chain D, Crystal Structure Of Stromelysin Catalytic Domain
Length = 162
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 75/145 (51%), Gaps = 12/145 (8%)
Query: 87 IKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE 146
+ + ++A W V P++F + + ADI I F +HGD PFDG VLAH+++P
Sbjct: 25 VDSAVEKALKVWEEVTPLTFSRLYEGE-ADIMISFAVREHGDFYPFDGPGNVLAHAYAPG 83
Query: 147 ---SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKP 203
+G H D E W K +L VA HEIGH LGL HS EA+MYP
Sbjct: 84 PGINGDAHFDDDEQWT------KDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHS 137
Query: 204 RD--KKVDLALDDIQGVQALYGSNP 226
+ L+ DDI G+Q+LYG P
Sbjct: 138 LTDLTRFRLSQDDINGIQSLYGPPP 162
>pdb|1HFS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With The
N-Carboxy-Alkyl Inhibitor L-764,004
Length = 160
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 87/175 (49%), Gaps = 23/175 (13%)
Query: 57 GKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDDYD 113
G P+W + L+Y ++NY L + + ++A W V P++F + +
Sbjct: 1 GIPKWRK---THLTY-----RIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGE 52
Query: 114 FADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVA 170
ADI I F +HGD PFDG VLAH+++P +G H D E W K
Sbjct: 53 -ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT------KDTTG 105
Query: 171 VDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD--KKVDLALDDIQGVQALYG 223
+L VA HEIGH LGL HS EA+MYP + L+ DDI G+Q+LYG
Sbjct: 106 TNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYG 160
>pdb|2JNP|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (Mmp-3)
In The Presence Of N-Isobutyl-N-[4-
Methoxyphenylsulfonyl]glycyl Hydroxamic Acid (Nngh)
pdb|2JT5|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (mmp-3)
In The Presence Of
N-hydroxy-2-[n-(2-hydroxyethyl)biphenyl-4- Sulfonamide]
Hydroxamic Acid (mlc88)
pdb|2JT6|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (Mmp-3)
In The Presence Of 3-4'-Cyanobyphenyl-4-Yloxy)-N-
Hdydroxypropionamide (Mmp-3 Inhibitor Vii)
Length = 161
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 87/175 (49%), Gaps = 23/175 (13%)
Query: 57 GKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDDYD 113
G P+W + L+Y ++NY L + + ++A W V P++F + +
Sbjct: 1 GIPKWRK---THLTY-----RIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGE 52
Query: 114 FADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVA 170
ADI I F +HGD PFDG VLAH+++P +G H D E W K
Sbjct: 53 -ADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWT------KDTTG 105
Query: 171 VDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRD--KKVDLALDDIQGVQALYG 223
+L VA HEIGH LGL HS EA+MYP + L+ DDI G+Q+LYG
Sbjct: 106 TNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYG 160
>pdb|1Q3A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
pdb|1Q3A|B Chain B, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
pdb|1Q3A|C Chain C, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
Length = 165
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 23/177 (12%)
Query: 55 FPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDD 111
FPG P+W + L+Y ++NY L + + ++A W V P++F +
Sbjct: 4 FPGMPKWRK---THLTY-----RIVNYTPDLPRDAVDSAIEKALKVWEEVTPLTFSRLYE 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKF---HLDAAETWAVDFGSEKSP 168
+ ADI I F +HGD FDG LAH++ P G + H D E W D
Sbjct: 56 GE-ADIMISFAVKEHGDNYSFDGPGHSLAHAYPPGPGLYGDIHFDDDEKWTED------A 108
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDK--KVDLALDDIQGVQALYG 223
+L VA HE+GH LGL HS EA+MYP + + L+ DD+ G+Q+LYG
Sbjct: 109 SGTNLFLVAAHELGHSLGLFHSANTEALMYPLYNSFTELAQFRLSQDDVNGIQSLYG 165
>pdb|1QIC|A Chain A, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|B Chain B, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|C Chain C, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|D Chain D, Crystal Structure Of Stromelysin Catalytic Domain
Length = 161
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 74/142 (52%), Gaps = 12/142 (8%)
Query: 87 IKAVFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE 146
+ + ++A W V P++F + + ADI I F +HGD PFDG VLAH+++P
Sbjct: 25 VDSAVEKALKVWEEVTPLTFSRLYEGE-ADIMISFAVREHGDFYPFDGPGNVLAHAYAPG 83
Query: 147 ---SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKP 203
+G H D E W K +L VA HEIGH LGL HS EA+MYP
Sbjct: 84 PGINGDAHFDDDEQWT------KDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHS 137
Query: 204 RD--KKVDLALDDIQGVQALYG 223
+ L+ DDI G+Q+LYG
Sbjct: 138 LTDLTRFRLSQDDINGIQSLYG 159
>pdb|1RM8|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-16MT3-
Mmp: Characterization Of Mt-Mmp Specific Features
Length = 169
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 81/162 (50%), Gaps = 13/162 (8%)
Query: 72 AFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDDYDF------ADIRIGFYNGD 125
+S +N+ + + + +RAF W +V P++F E + DI I F +G
Sbjct: 10 TYSIKNVTPKVGDPETRKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGF 69
Query: 126 HGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIG 182
HGD PFDG G LAH++ P G H D+ E W + + DL VAVHE+G
Sbjct: 70 HGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTL---GNPNHDGNDLFLVAVHELG 126
Query: 183 HLLGLTHSPVKEAVMYPTLKPRD-KKVDLALDDIQGVQALYG 223
H LGL HS A+M P + + L DD+QG+Q +YG
Sbjct: 127 HALGLEHSNDPTAIMAPFYQYMETDNFKLPNDDLQGIQKIYG 168
>pdb|3MA2|D Chain D, Complex Membrane Type-1 Matrix Metalloproteinase (Mt1-Mmp)
With Tissue Inhibitor Of Metalloproteinase-1 (Timp-1)
pdb|3MA2|A Chain A, Complex Membrane Type-1 Matrix Metalloproteinase (Mt1-Mmp)
With Tissue Inhibitor Of Metalloproteinase-1 (Timp-1)
Length = 181
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 74/149 (49%), Gaps = 16/149 (10%)
Query: 92 KRAFSKWASVIPVSFIETDDYDF--------ADIRIGFYNGDHGDGEPFDGVLGVLAHSF 143
++AF W S P+ F E Y + ADI I F G HGD PFDG G LAH++
Sbjct: 34 RKAFRVWESATPLRFREVP-YAYIREGHEKQADIMIFFAEGFHGDSTPFDGEGGFLAHAY 92
Query: 144 SPE---SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPT 200
P G H D+AE W V + D+ VAVHE+GH LGL HS A+M P
Sbjct: 93 FPGPNIGGDTHFDSAEPWTV---RNEDLNGNDIFLVAVHELGHALGLEHSSDPSAIMAPF 149
Query: 201 LKPRD-KKVDLALDDIQGVQALYGSNPNF 228
+ D + L DD +G+Q LYG F
Sbjct: 150 YQWMDTENFVLPDDDRRGIQQLYGGESGF 178
>pdb|3V96|B Chain B, Complex Of Matrix Metalloproteinase-10 Catalytic Domain
(Mmp-10cd) With Tissue Inhibitor Of Metalloproteinases-1
(Timp-1)
Length = 165
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 23/177 (12%)
Query: 55 FPGKPRWTRHVPMTLSYAFSKENMINY---LHITDIKAVFKRAFSKWASVIPVSFIETDD 111
FPG P+W + L+Y ++NY L + + ++A W V P++F +
Sbjct: 4 FPGMPKWRK---THLTY-----RIVNYTPDLPRDAVDSAIEKALKVWEEVTPLTFSRLYE 55
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKF---HLDAAETWAVDFGSEKSP 168
+ ADI I F +HGD FDG LAH++ P G + H D E W D
Sbjct: 56 GE-ADIMISFAVKEHGDFYSFDGPGHSLAHAYPPGPGLYGDIHFDDDEKWTED------A 108
Query: 169 VAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTLKPRDK--KVDLALDDIQGVQALYG 223
+L VA HE+GH LGL HS EA+MYP + + L+ DD+ G+Q+LYG
Sbjct: 109 SGTNLFLVAAHELGHSLGLFHSANTEALMYPLYNSFTELAQFRLSQDDVNGIQSLYG 165
>pdb|1BQQ|M Chain M, Crystal Structure Of The Mt1-Mmp--Timp-2 Complex
pdb|1BUV|M Chain M, Crystal Structure Of The Mt1-Mmp-Timp-2 Complex
Length = 174
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 73/145 (50%), Gaps = 16/145 (11%)
Query: 92 KRAFSKWASVIPVSFIETDDYDF--------ADIRIGFYNGDHGDGEPFDGVLGVLAHSF 143
++AF W S P+ F E Y + ADI I F G HGD PFDG G LAH++
Sbjct: 32 RKAFRVWESATPLRFREVP-YAYIREGHEKQADIMIFFAEGFHGDSTPFDGEGGFLAHAY 90
Query: 144 SPE---SGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPT 200
P G H D+AE W V + D+ VAVHE+GH LGL HS A+M P
Sbjct: 91 FPGPNIGGDTHFDSAEPWTV---RNEDLNGNDIFLVAVHELGHALGLEHSSDPSAIMAPF 147
Query: 201 LKPRD-KKVDLALDDIQGVQALYGS 224
+ D + L DD +G+Q LYG
Sbjct: 148 YQWMDTENFVLPDDDRRGIQQLYGG 172
>pdb|1CK7|A Chain A, Gelatinase A (Full-Length)
pdb|1GXD|A Chain A, Prommp-2TIMP-2 Complex
pdb|1GXD|B Chain B, Prommp-2TIMP-2 Complex
Length = 631
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 62/120 (51%), Gaps = 15/120 (12%)
Query: 51 DYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAV---FKRAFSKWASVIPVSFI 107
+Y FP KP+W ++ ++Y +I Y D + V F RAF W+ V P+ F
Sbjct: 80 NYNFFPRKPKWDKN---QITY-----RIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFS 131
Query: 108 ETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGS 164
D + ADI I F +HGDG PFDG G+LAH+F+P + G H D E W + G
Sbjct: 132 RIHDGE-ADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQ 190
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPNFTIGS 232
VA H GH +GL HS A+M P + K L+ DDI+G+Q LYG++P+ +G+
Sbjct: 371 VAAHAFGHAMGLEHSQDPGALMAP-IYTYTKNFRLSQDDIKGIQELYGASPDIDLGT 426
>pdb|1EAK|A Chain A, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|B Chain B, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|C Chain C, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|D Chain D, Catalytic Domain Of Prommp-2 E404q Mutant
Length = 421
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 62/120 (51%), Gaps = 15/120 (12%)
Query: 51 DYVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAV---FKRAFSKWASVIPVSFI 107
+Y FP KP+W ++ ++Y +I Y D + V F RAF W+ V P+ F
Sbjct: 78 NYNFFPRKPKWDKN---QITY-----RIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFS 129
Query: 108 ETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPES---GKFHLDAAETWAVDFGS 164
D + ADI I F +HGDG PFDG G+LAH+F+P + G H D E W + G
Sbjct: 130 RIHDGE-ADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQ 188
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYGSNPN 227
VA H+ GH +GL HS A+M P + K L+ DDI+G+Q LYG++P+
Sbjct: 369 VAAHQFGHAMGLEHSQDPGALMAP-IYTYTKNFRLSQDDIKGIQELYGASPD 419
>pdb|1L6J|A Chain A, Crystal Structure Of Human Matrix Metalloproteinase Mmp9
(gelatinase B)
Length = 425
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 52 YVLFPGKPRWTRHVPMTLSYAFSKENMINYLHITDIKAVFKRAFSKWASVIPVSFIETDD 111
+ F G +W H + + +N L I F RAF+ W++V P++F
Sbjct: 88 FQTFEGDLKWHHH-----NITYWIQNYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYS 142
Query: 112 YDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPE---SGKFHLDAAETWAVDFG 163
D ADI I F +HGDG PFDG G+LAH+F P G H D E W++ G
Sbjct: 143 RD-ADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPGIQGDAHFDDDELWSLGKG 196
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 176 VAVHEIGHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGVQALYG 223
VA HE GH LGL HS V EA+MYP + + L DD+ G++ LYG
Sbjct: 379 VAAHEFGHALGLDHSSVPEALMYPMYRFTEGPP-LHKDDVNGIRHLYG 425
>pdb|1SMP|A Chain A, Crystal Structure Of A Complex Between Serratia Marcescens
Metallo-Protease And An Inhibitor From Erwinia
Chrysanthemi
Length = 471
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 94/254 (37%), Gaps = 48/254 (18%)
Query: 18 HESPQCIAVRSTPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTRHVPMTLS---YAFS 74
HE I + F +Q+ + E + Y +F G+P V +T S Y FS
Sbjct: 16 HERGNGIQINGKDSFSNEQAGLFITRE-NQTWNGYKVF-GQP-----VKLTFSFPDYKFS 68
Query: 75 KENMINYLHITDIKA----VFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGE 130
N+ ++ A K + WA V ++F E A+I G Y+ D
Sbjct: 69 STNVAGDTGLSKFSAEQQQQAKLSLQSWADVANITFTEVAAGQKANITFGNYSQD----R 124
Query: 131 PFDGVLGVLAHSFSPESGKFHLD-AAETW-AVDFGSEKSPVAVDL-ESVAVHEIGHLLGL 187
P G A++F P + D +TW V+ + K P D HEIGH LGL
Sbjct: 125 PGHYDYGTQAYAFLPNTIWQGQDLGGQTWYNVNQSNVKHPATEDYGRQTFTHEIGHALGL 184
Query: 188 TH---------SPVKEAVMYP--------------TLKPRDKKVDLA----LDDIQGVQA 220
+H +P V Y T D A LDDI +Q
Sbjct: 185 SHPGDYNAGEGNPTYNDVTYAEDTRQFSLMSYWSETNTGGDNGGHYAAAPLLDDIAAIQH 244
Query: 221 LYGSNPNFTIGSLV 234
LYG+N + G V
Sbjct: 245 LYGANLSTRTGDTV 258
>pdb|1SRP|A Chain A, Structural Analysis Of Serratia Protease
Length = 471
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 94/254 (37%), Gaps = 48/254 (18%)
Query: 18 HESPQCIAVRSTPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTRHVPMTLS---YAFS 74
HE I + F +Q+ + E + Y +F G+P V +T S Y FS
Sbjct: 16 HERGNGIQINGKDSFSNEQAGLFITRE-NQTWNGYKVF-GQP-----VKLTFSFPDYKFS 68
Query: 75 KENMINYLHITDIKA----VFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGE 130
N+ ++ A K + WA V ++F E A+I G Y+ D
Sbjct: 69 STNVAGDTGLSKFSAEQQQQAKLSLQSWADVANITFTEVAAGQKANITFGNYSQD----R 124
Query: 131 PFDGVLGVLAHSFSPESGKFHLD-AAETW-AVDFGSEKSPVAVDL-ESVAVHEIGHLLGL 187
P G A++F P + D +TW V+ + K P D HEIGH LGL
Sbjct: 125 PGHYDYGTQAYAFLPNTIWQGQDLGGQTWYNVNQSNVKHPATEDYGRQTFTHEIGHALGL 184
Query: 188 TH---------SPVKEAVMYP--------------TLKPRDKKVDLA----LDDIQGVQA 220
+H +P V Y T D A LDDI +Q
Sbjct: 185 SHPGDYNAGEGNPTYRDVTYAEDTRQFSLMSYWSETNTGGDNGGHYAAAPLLDDIAAIQH 244
Query: 221 LYGSNPNFTIGSLV 234
LYG+N + G V
Sbjct: 245 LYGANLSTRTGDTV 258
>pdb|1AF0|A Chain A, Serratia Protease In Complex With Inhibitor
Length = 471
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 93/254 (36%), Gaps = 48/254 (18%)
Query: 18 HESPQCIAVRSTPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTRHVPMTLS---YAFS 74
HE I + F +Q+ + E + Y +F G+P V +T S Y FS
Sbjct: 16 HERGNGIQINGKDSFSNEQAGLFITRE-NQTWNGYKVF-GQP-----VKLTFSFPDYKFS 68
Query: 75 KENMINYLHITDIKA----VFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGE 130
N+ ++ A K + WA V ++F E A+I G Y+ D
Sbjct: 69 STNVAGDTGLSKFSAEQQQQAKLSLQSWADVANITFTEVAAGQKANITFGNYSQD----R 124
Query: 131 PFDGVLGVLAHSFSPESGKFHLD-AAETW-AVDFGSEKSPVAVDL-ESVAVHEIGHLLGL 187
P G A++F P + D +TW V+ + K P D HEIGH LGL
Sbjct: 125 PGHYDYGTQAYAFLPNTIWQGQDLGGQTWYNVNQSNVKHPATEDYGRQTFTHEIGHALGL 184
Query: 188 TH---------SPVKEAVMYP--------------TLKPRDKKVDLA----LDDIQGVQA 220
+H P V Y T D A LDDI +Q
Sbjct: 185 SHPGDYNAGEGDPTYNDVTYAEDTRQFSLMSYWSETNTGGDNGGHYAAAPLLDDIAAIQH 244
Query: 221 LYGSNPNFTIGSLV 234
LYG+N + G V
Sbjct: 245 LYGANLSTRTGDTV 258
>pdb|1SAT|A Chain A, Crystal Structure Of The 50 Kda Metallo Protease From S.
Marcescens
Length = 471
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 93/254 (36%), Gaps = 48/254 (18%)
Query: 18 HESPQCIAVRSTPKFKLKQSDKYDPAEATRHKKDYVLFPGKPRWTRHVPMTLS---YAFS 74
HE I + F +Q+ + E + Y +F G+P V +T S Y FS
Sbjct: 16 HERGNGIQINGKDSFSNEQAGLFITRE-NQTWNGYKVF-GQP-----VKLTFSFPDYKFS 68
Query: 75 KENMINYLHITDIKA----VFKRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGE 130
N+ ++ A K + WA V ++F E A+I G Y+ D
Sbjct: 69 STNVAGDTGLSKFSAEQQQQAKLSLQSWADVANITFTEVAAGQKANITFGNYSQD----R 124
Query: 131 PFDGVLGVLAHSFSPESGKFHLD-AAETW-AVDFGSEKSPVAVDL-ESVAVHEIGHLLGL 187
P G A++F P + D +TW V+ + K P D HEIGH LGL
Sbjct: 125 PGHYDYGTQAYAFLPNTIWQGQDLGGQTWYNVNQSNVKHPATEDYGRQTFTHEIGHALGL 184
Query: 188 TH---------SPVKEAVMYP--------------TLKPRDKKVDLA----LDDIQGVQA 220
+H P V Y T D A LDDI +Q
Sbjct: 185 SHPGDYNAGEGDPTYADVTYAEDTRQFSLMSYWSETNTGGDNGGHYAAAPLLDDIAAIQH 244
Query: 221 LYGSNPNFTIGSLV 234
LYG+N + G V
Sbjct: 245 LYGANLSTRTGDTV 258
>pdb|1G9K|A Chain A, Crystal Structure Of A Psychrophilic Alkaline Protease
From Pseudomonas Tac Ii 18
pdb|1O0Q|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 1 Mm Edta
pdb|1O0T|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 5 Mm Edta (5
Days)
pdb|1OM6|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 5mm Edta (2
Months)
pdb|1OM7|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Soaked In 85 Mm Edta
pdb|1OM8|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallyzed With 10 Mm Edta
pdb|1OMJ|A Chain A, Crystal Structure Of A Psychrophilic Alkaline Protease
From Pseudomonas Tac Ii 18
Length = 463
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 61/169 (36%), Gaps = 47/169 (27%)
Query: 92 KRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFH 151
K + WA V V+F E D + F N F G A ++ P S +
Sbjct: 90 KLSLESWADVAKVTFTEGPAARGDDGHMTFAN--------FSASNGGAAFAYLPNSSR-- 139
Query: 152 LDAAETWAV---DFGSEKSPVAVDL-ESVAVHEIGHLLGLTH---------SPVKEAVMY 198
E+W + D+ K+P + HEIGH LGL+H +P +Y
Sbjct: 140 --KGESWYLINKDYQVNKTPGEGNYGRQTLTHEIGHTLGLSHPGDYNAGNGNPTYRDAVY 197
Query: 199 P----------------TLKPRDKKVDLA------LDDIQGVQALYGSN 225
T + K + A LDDI VQ LYG+N
Sbjct: 198 AEDTRAYSVMSYWSEKNTGQVFTKTGEGAYASAPLLDDIAAVQKLYGAN 246
>pdb|3U1R|A Chain A, Structure Analysis Of A New Psychrophilic Marine Protease
Length = 480
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 16/102 (15%)
Query: 92 KRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFH 151
K + WA V V+F E D + F N F G A ++ P S +
Sbjct: 107 KLSLESWADVAKVTFTEGPAARGDDGHMTFAN--------FSASNGGAAFAYLPNSSR-- 156
Query: 152 LDAAETWAV---DFGSEKSPVAVDL-ESVAVHEIGHLLGLTH 189
E+W + D+ K+P + HEIGH LGL+H
Sbjct: 157 --KGESWYLINKDYDVNKTPGEGNYGRQTLTHEIGHTLGLSH 196
>pdb|1H71|P Chain P, Psychrophilic Protease From Pseudoalteromonas 'tac Ii 18'
Length = 463
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 60/169 (35%), Gaps = 47/169 (27%)
Query: 92 KRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFH 151
K + WA V V+F E D F N F G A ++ P S +
Sbjct: 90 KLSLESWADVAKVTFTEGPAARGDDGHQTFAN--------FSASNGGAAFAYLPNSSR-- 139
Query: 152 LDAAETWAV---DFGSEKSPVAVDL-ESVAVHEIGHLLGLTH---------SPVKEAVMY 198
E+W + D+ K+P + HEIGH LGL+H +P +Y
Sbjct: 140 --KGESWYLINKDYQVNKTPGEGNYGRQTLTHEIGHTLGLSHPGDYNAGNGNPTYRDAVY 197
Query: 199 P----------------TLKPRDKKVDLA------LDDIQGVQALYGSN 225
T + K + A LDDI VQ LYG+N
Sbjct: 198 AEDTRAYSVMSYWSEKNTGQVFTKTGEGAYASAPLLDDIAAVQKLYGAN 246
>pdb|1K7G|A Chain A, Prtc From Erwinia Chrysanthemi
Length = 479
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
Query: 92 KRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFH 151
K + W+ V ++F E A+I G Y D + G A+++ P G +
Sbjct: 106 KLSLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDY----GTQAYAYYP--GNYQ 159
Query: 152 LDAAETWAVDFGSEKSPVAVDL-ESVAVHEIGHLLGLTH 189
+ + + + ++P + + HEIGH LGL H
Sbjct: 160 GAGSSWYNYNQSNIRNPGSEEYGRQTFTHEIGHALGLAH 198
>pdb|1K7I|A Chain A, Prtc From Erwinia Chrysanthemi: Y228f Mutant
Length = 479
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
Query: 92 KRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFH 151
K + W+ V ++F E A+I G Y D + G A+++ P G +
Sbjct: 106 KLSLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDY----GTQAYAYYP--GNYQ 159
Query: 152 LDAAETWAVDFGSEKSPVAVDL-ESVAVHEIGHLLGLTH 189
+ + + + ++P + + HEIGH LGL H
Sbjct: 160 GAGSSWYNYNQSNIRNPGSEEYGRQTFTHEIGHALGLAH 198
>pdb|1GO8|P Chain P, The Metzincin's Methionine: Prtc M226l Mutant
Length = 462
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
Query: 92 KRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFH 151
K + W+ V ++F E A+I G Y D + G A+++ P G +
Sbjct: 89 KLSLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDY----GTQAYAYYP--GNYQ 142
Query: 152 LDAAETWAVDFGSEKSPVAVDL-ESVAVHEIGHLLGLTH 189
+ + + + ++P + + HEIGH LGL H
Sbjct: 143 GAGSSWYNYNQSNIRNPGSEEYGRQTFTHEIGHALGLAH 181
>pdb|3HBV|P Chain P, Prtc Methionine Mutants: M226a In-House
pdb|3HDA|P Chain P, Prtc Methionine Mutants: M226a_desy
Length = 462
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
Query: 92 KRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFH 151
K + W+ V ++F E A+I G Y D + G A+++ P G +
Sbjct: 89 KLSLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDY----GTQAYAYYP--GNYQ 142
Query: 152 LDAAETWAVDFGSEKSPVAVDL-ESVAVHEIGHLLGLTH 189
+ + + + ++P + + HEIGH LGL H
Sbjct: 143 GAGSSWYNYNQSNIRNPGSEEYGRQTFTHEIGHALGLAH 181
>pdb|3HBU|P Chain P, Prtc Methionine Mutants: M226h Desy
Length = 462
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
Query: 92 KRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFH 151
K + W+ V ++F E A+I G Y D + G A+++ P G +
Sbjct: 89 KLSLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDY----GTQAYAYYP--GNYQ 142
Query: 152 LDAAETWAVDFGSEKSPVAVDL-ESVAVHEIGHLLGLTH 189
+ + + + ++P + + HEIGH LGL H
Sbjct: 143 GAGSSWYNYNQSNIRNPGSEEYGRQTFTHEIGHALGLAH 181
>pdb|3EDG|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease
Domain
Length = 202
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 47/135 (34%), Gaps = 46/135 (34%)
Query: 88 KAVFKRAFSKWASVIPVSFIETDDYD------FADIRIGFYNGDHGDGEPFDGVLGVLAH 141
+AVF++A W V+F+E D D + Y G G G
Sbjct: 29 RAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGG------------ 76
Query: 142 SFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTL 201
P+ A+ G D + VHE+GH++G H T
Sbjct: 77 ---PQ------------AISIGKN-----CDKFGIVVHELGHVVGFWHE--------HTR 108
Query: 202 KPRDKKVDLALDDIQ 216
RD+ V + ++IQ
Sbjct: 109 PDRDRHVSIVRENIQ 123
>pdb|3EDH|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease
Domain In Complex With Partially Bound Dmso
Length = 201
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 47/135 (34%), Gaps = 46/135 (34%)
Query: 88 KAVFKRAFSKWASVIPVSFIETDDYD------FADIRIGFYNGDHGDGEPFDGVLGVLAH 141
+AVF++A W V+F+E D D + Y G G G
Sbjct: 28 RAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGG------------ 75
Query: 142 SFSPESGKFHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKEAVMYPTL 201
P+ A+ G D + VHE+GH++G H T
Sbjct: 76 ---PQ------------AISIGKN-----CDKFGIVVHELGHVVGFWHE--------HTR 107
Query: 202 KPRDKKVDLALDDIQ 216
RD+ V + ++IQ
Sbjct: 108 PDRDRHVSIVRENIQ 122
>pdb|3ZVS|B Chain B, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 1.4 A Resolution Complexed
With Malonate
Length = 160
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/14 (78%), Positives = 12/14 (85%)
Query: 177 AVHEIGHLLGLTHS 190
AVHEIGH+LGL H
Sbjct: 115 AVHEIGHVLGLKHC 128
>pdb|3ZVS|A Chain A, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 1.4 A Resolution Complexed
With Malonate
pdb|3ZVS|C Chain C, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 1.4 A Resolution Complexed
With Malonate
pdb|4A3W|A Chain A, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 2.16 A Resolution Complexed
With Citrate
Length = 160
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/14 (78%), Positives = 12/14 (85%)
Query: 177 AVHEIGHLLGLTHS 190
AVHEIGH+LGL H
Sbjct: 115 AVHEIGHVLGLKHC 128
>pdb|4AXQ|A Chain A, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 1.4 A Resolution
Length = 163
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/14 (78%), Positives = 12/14 (85%)
Query: 177 AVHEIGHLLGLTHS 190
AVHEIGH+LGL H
Sbjct: 118 AVHEIGHVLGLKHC 131
>pdb|3HDB|A Chain A, Crystal Structure Of Aahiv, A Metalloproteinase From Venom
Of Agkistrodon Acutus
Length = 417
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 167 SPVAVDLESVAVHEIGHLLGLTH------SPVKEAVMYPTLKPRDKKVDLALDDIQGVQA 220
SP+ + L + HE+GH LG+ H +M P++ P K IQ
Sbjct: 129 SPINLVLAVIMAHEMGHNLGIHHDDGYCYCGGYPCIMGPSISPEPSKFFSNCSYIQCWDF 188
Query: 221 LYGSNPNFTIGSLVESDI 238
+ NP + +DI
Sbjct: 189 IMNHNPECIDNEPLGTDI 206
>pdb|1GO7|P Chain P, The Metzincin's Methionine: Prtc M226c-E189k Double Mutant
Length = 462
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
Query: 92 KRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFH 151
K + W+ V ++F E A+I G Y D + G A+++ P G +
Sbjct: 89 KLSLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDY----GTQAYAYYP--GNYQ 142
Query: 152 LDAAETWAVDFGSEKSPVAVDL-ESVAVHEIGHLLGLTH 189
+ + + + ++P + + H+IGH LGL H
Sbjct: 143 GAGSSWYNYNQSNIRNPGSEEYGRQTFTHKIGHALGLAH 181
>pdb|1KAP|P Chain P, Three-Dimensional Structure Of The Alkaline Protease Of
Pseudomonas Aeruginosa: A Two-Domain Protein With A
Calcium Binding Parallel Beta Roll Motif
Length = 479
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 47/176 (26%)
Query: 92 KRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFH 151
K + W+ V + F++ D D+ G F +G A +F P+
Sbjct: 106 KLSLQSWSDVTNIHFVDAGQGDQGDLTFG----------NFSSSVGGAAFAFLPDV---- 151
Query: 152 LDA--AETWAV---DFGSEKSPVAVDL-ESVAVHEIGHLLGLTH---------------- 189
DA ++W + + + +P + HEIGH LGL+H
Sbjct: 152 PDALKGQSWYLINSSYSANVNPANGNYGRQTLTHEIGHTLGLSHPGDYNAGEGDPTYADA 211
Query: 190 SPVKEAVMYPTL---KPRDKKVDLA--------LDDIQGVQALYGSNPNFTIGSLV 234
+ ++ Y + + ++ D LDDI +Q LYG+N G V
Sbjct: 212 TYAEDTRAYSVMSYWEEQNTGQDFKGAYSSAPLLDDIAAIQKLYGANLTTRTGDTV 267
>pdb|1BKC|E Chain E, Catalytic Domain Of Tnf-Alpha Converting Enzyme (Tace)
Length = 256
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 137 GVLAHSFSPESGK--FHLDAAETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTHSPVKE 194
GV ++ GK +L++ T ++G K+ + + + V HE+GH G H P +
Sbjct: 145 GVCPKAYYSPVGKKNIYLNSGLTSTKNYG--KTILTKEADLVTTHELGHNFGAEHDPDGK 202
Query: 195 AVMYPT 200
A P
Sbjct: 203 AECAPN 208
>pdb|1JIW|P Chain P, Crystal Structure Of The Apr-Aprin Complex
pdb|1AKL|A Chain A, Alkaline Protease From Pseudomonas Aeruginosa Ifo3080
pdb|3VI1|A Chain A, Crystal Structure Of Pseudomonas Aerginosa Alkaline
Protease Complexed With Substance P(1-6)
pdb|3VI1|B Chain B, Crystal Structure Of Pseudomonas Aerginosa Alkaline
Protease Complexed With Substance P(1-6)
Length = 470
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 47/176 (26%)
Query: 92 KRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFH 151
K + W+ V + F++ D D+ G F +G A +F P+
Sbjct: 97 KLSLQSWSDVTNIHFVDAGQGDQGDLTFG----------NFSSSVGGAAFAFLPDV---- 142
Query: 152 LDA--AETWAV---DFGSEKSPVAVDL-ESVAVHEIGHLLGLTH---------------- 189
DA ++W + + + +P + HEIGH LGL+H
Sbjct: 143 PDALKGQSWYLINSSYSANVNPANGNYGRQTLTHEIGHTLGLSHPGDYNAGEGDPTYADA 202
Query: 190 SPVKEAVMYPTL---KPRDKKVDLA--------LDDIQGVQALYGSNPNFTIGSLV 234
+ ++ Y + + ++ D LDDI +Q LYG+N G V
Sbjct: 203 TYAEDTRAYSVMSYWEEQNTGQDFKGAYSSAPLLDDIAAIQKLYGANLTTRTGDTV 258
>pdb|4B6A|TT Chain t, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 614
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 125 DHGDGEPFDGVLGVLAHSFSPESGKFHLDAAETWAVDFGSEKSPV---AVDLESVAVHEI 181
D G PF V + + F +SG+ +L + +++ ++K V VD + H+
Sbjct: 312 DRGQSTPFTNVSAIPSDDFVVQSGEVYLIDLKMASLEHCTKKGLVTLETVDSYTGKSHKA 371
Query: 182 GHLLGLTHSPVKEAVMYPTLKPRDKKVDLALDDIQGV 218
G L+ + V++ LK + + L D QGV
Sbjct: 372 GELIARPGAYVRDFAQTHILKLKTSRQLLTKIDKQGV 408
>pdb|1R54|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Adam33
pdb|1R55|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Adam 33
Length = 214
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 164 SEKSPVAVDLESVAVHEIGHLLGLTHSP 191
++ S + + + HEIGH LGL+H P
Sbjct: 127 TDHSELPIGAAATMAHEIGHSLGLSHDP 154
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 134 GVLGVLAHSFSPES-GKFHLDAA---ETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTH 189
GV+G+ F +HL+ A W D+ + + + ++E G LLGLT+
Sbjct: 141 GVIGLPGSPFGERRPSDYHLELAGPGRVWYQDYFAVQDGIITEIEE---DLRGWLLGLTY 197
Query: 190 SPVKEAVMYPTLKPRDKKVDL-ALDDIQGVQA 220
+ E +M T D VDL ++D I ++A
Sbjct: 198 TVSGEGMMAATKAAVDAGVDLESMDPIDVIRA 229
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 134 GVLGVLAHSFSPES-GKFHLDAA---ETWAVDFGSEKSPVAVDLESVAVHEIGHLLGLTH 189
GV+G+ F +HL+ A W D+ + + + ++E G LLGLT+
Sbjct: 135 GVIGLPGSPFGERRPSDYHLELAGPGRVWYQDYFAVQDGIITEIEE---DLRGWLLGLTY 191
Query: 190 SPVKEAVMYPTLKPRDKKVDL-ALDDIQGVQA 220
+ E +M T D VDL ++D I ++A
Sbjct: 192 TVSGEGMMAATKAAVDAGVDLESMDPIDVIRA 223
>pdb|1K7Q|A Chain A, Prtc From Erwinia Chrysanthemi: E189a Mutant
Length = 479
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Query: 92 KRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFH 151
K + W+ V ++F E A+I G Y D + G A+++ P G +
Sbjct: 106 KLSLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDY----GTQAYAYYP--GNYQ 159
Query: 152 LDAAETWAVDFGSEKSPVAVDL-ESVAVHEIGHLLGLTH 189
+ + + + ++P + + H IGH LGL H
Sbjct: 160 GAGSSWYNYNQSNIRNPGSEEYGRQTFTHAIGHALGLAH 198
>pdb|3HB2|P Chain P, Prtc Methionine Mutants: M226i
Length = 462
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Query: 92 KRAFSKWASVIPVSFIETDDYDFADIRIGFYNGDHGDGEPFDGVLGVLAHSFSPESGKFH 151
K + W+ V ++F E A+I G Y D + G A+++ P G +
Sbjct: 89 KLSLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDY----GTQAYAYYP--GNYQ 142
Query: 152 LDAAETWAVDFGSEKSPVAVDL-ESVAVHEIGHLLGLTH 189
+ + + + ++P + + H IGH LGL H
Sbjct: 143 GAGSSWYNYNQSNIRNPGSEEYGRQTFTHAIGHALGLAH 181
>pdb|3LJT|A Chain A, Crystal Structure Of The Catalytic Domain Of Adamts-5 In
Complex With An Amino-2-Indanol Compound
Length = 218
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 178 VHEIGHLLGLTHSPVK 193
HEIGHLLGL+H K
Sbjct: 147 AHEIGHLLGLSHDDSK 162
>pdb|3HY7|A Chain A, Crystal Structure Of The Catalytic Domain Of Adamts-5 In
Complex With Marimastat
pdb|3HY7|B Chain B, Crystal Structure Of The Catalytic Domain Of Adamts-5 In
Complex With Marimastat
pdb|3HY9|A Chain A, Crystal Structure Of The Catalytic Domain Of Adamts-5 In
Complex With An Amino-2-Indanol Compound
pdb|3HY9|B Chain B, Crystal Structure Of The Catalytic Domain Of Adamts-5 In
Complex With An Amino-2-Indanol Compound
pdb|3HYG|A Chain A, Crystal Structure Of The Catalytic Domain Of Adamts-5 In
Complex With An Amino-2-Indanol Compound
pdb|3HYG|B Chain B, Crystal Structure Of The Catalytic Domain Of Adamts-5 In
Complex With An Amino-2-Indanol Compound
Length = 221
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 179 HEIGHLLGLTHSPVK 193
HEIGHLLGL+H K
Sbjct: 151 HEIGHLLGLSHDDSK 165
>pdb|3B8Z|A Chain A, High Resolution Crystal Structure Of The Catalytic Domain
Of Adamts-5 (Aggrecanase-2)
pdb|3B8Z|B Chain B, High Resolution Crystal Structure Of The Catalytic Domain
Of Adamts-5 (Aggrecanase-2)
Length = 217
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 178 VHEIGHLLGLTHSPVK 193
HEIGHLLGL+H K
Sbjct: 146 AHEIGHLLGLSHDDSK 161
>pdb|2RJQ|A Chain A, Crystal Structure Of Adamts5 With Inhibitor Bound
Length = 378
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 178 VHEIGHLLGLTHSPVK 193
HEIGHLLGL+H K
Sbjct: 148 AHEIGHLLGLSHDDSK 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,092,303
Number of Sequences: 62578
Number of extensions: 355916
Number of successful extensions: 1220
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 902
Number of HSP's gapped (non-prelim): 140
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)