Query         043641
Match_columns 478
No_of_seqs    185 out of 1971
Neff          11.4
Searched_HMMs 46136
Date          Fri Mar 29 06:54:26 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043641hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG0156 Cytochrome P450 CYP2 s 100.0 1.1E-84 2.3E-89  604.7  44.4  438   29-476    25-485 (489)
  2 PLN03234 cytochrome P450 83B1; 100.0 6.9E-77 1.5E-81  573.6  45.4  465   10-478     9-498 (499)
  3 PLN02687 flavonoid 3'-monooxyg 100.0 7.9E-77 1.7E-81  573.5  45.3  464   12-477    16-507 (517)
  4 KOG0158 Cytochrome P450 CYP3/C 100.0 1.2E-77 2.7E-82  548.2  36.6  456    7-477     8-497 (499)
  5 PLN02971 tryptophan N-hydroxyl 100.0 1.6E-76 3.4E-81  572.9  44.0  446   27-475    54-530 (543)
  6 PLN00110 flavonoid 3',5'-hydro 100.0 7.6E-76 1.6E-80  563.0  45.5  465    8-477     9-495 (504)
  7 PLN03112 cytochrome P450 famil 100.0 2.6E-75 5.7E-80  564.1  46.5  476    2-477     4-506 (514)
  8 PLN02966 cytochrome P450 83A1  100.0 3.4E-75 7.4E-80  560.6  42.2  471    4-478     4-499 (502)
  9 PLN02183 ferulate 5-hydroxylas 100.0 9.9E-75 2.1E-79  558.8  43.5  442   28-477    34-510 (516)
 10 PTZ00404 cytochrome P450; Prov 100.0 2.5E-74 5.4E-79  553.4  42.3  453    6-476     5-480 (482)
 11 PLN02394 trans-cinnamate 4-mon 100.0 4.3E-73 9.3E-78  547.8  45.0  449   26-477    26-502 (503)
 12 PLN00168 Cytochrome P450; Prov 100.0 2.1E-72 4.6E-77  542.9  44.4  445   25-476    30-514 (519)
 13 PLN02655 ent-kaurene oxidase   100.0 5.4E-72 1.2E-76  533.4  41.4  436   32-477     1-462 (466)
 14 PLN02500 cytochrome P450 90B1  100.0 2.6E-71 5.7E-76  532.6  40.0  429   19-478    27-489 (490)
 15 PLN02290 cytokinin trans-hydro 100.0 1.1E-71 2.5E-76  539.1  37.5  431   28-477    40-513 (516)
 16 PLN03018 homomethionine N-hydr 100.0 4.9E-70 1.1E-74  523.4  45.7  421   28-449    38-497 (534)
 17 KOG0157 Cytochrome P450 CYP4/C 100.0 1.8E-70 3.9E-75  521.1  35.5  435   28-477    33-494 (497)
 18 PLN02774 brassinosteroid-6-oxi 100.0 4.1E-70 8.9E-75  520.0  35.9  415   26-477    27-462 (463)
 19 PF00067 p450:  Cytochrome P450 100.0 4.4E-71 9.5E-76  534.0  26.6  413   32-449     1-440 (463)
 20 KOG0159 Cytochrome P450 CYP11/ 100.0 2.5E-69 5.4E-74  481.6  34.6  435   28-477    48-516 (519)
 21 PLN02169 fatty acid (omega-1)- 100.0 2.8E-68   6E-73  509.7  37.3  429   30-477    31-498 (500)
 22 PLN03195 fatty acid omega-hydr 100.0 3.5E-68 7.6E-73  514.2  38.0  435   31-477    31-514 (516)
 23 PLN02196 abscisic acid 8'-hydr 100.0 1.1E-67 2.4E-72  502.8  37.5  431    5-476    10-460 (463)
 24 PLN02738 carotene beta-ring hy 100.0 1.3E-67 2.8E-72  511.7  37.9  421   42-476   143-592 (633)
 25 PLN03141 3-epi-6-deoxocathaste 100.0 5.8E-67 1.3E-71  497.3  35.5  418   25-477     2-448 (452)
 26 PLN02987 Cytochrome P450, fami 100.0   2E-66 4.3E-71  492.1  38.7  440    3-477     3-467 (472)
 27 PLN02302 ent-kaurenoic acid ox 100.0 3.5E-66 7.5E-71  499.7  40.4  419   25-476    37-485 (490)
 28 PLN02936 epsilon-ring hydroxyl 100.0 1.7E-65 3.7E-70  490.7  38.2  432   29-477    11-480 (489)
 29 KOG0684 Cytochrome P450 [Secon 100.0 1.2E-65 2.6E-70  446.3  31.5  424   30-476    31-482 (486)
 30 PLN02426 cytochrome P450, fami 100.0 3.8E-63 8.2E-68  473.4  37.1  421   38-477    49-498 (502)
 31 PLN02648 allene oxide synthase 100.0 1.8E-58 3.9E-63  434.0  28.5  409   26-450    13-463 (480)
 32 COG2124 CypX Cytochrome P450 [ 100.0 1.2E-49 2.5E-54  370.4  27.6  342   51-449    24-387 (411)
 33 PF08492 SRP72:  SRP72 RNA-bind  66.7     4.5 9.7E-05   25.7   1.7    8  393-400    44-51  (59)
 34 PRK06789 flagellar motor switc  62.7      11 0.00023   25.4   3.0   40  336-375    21-62  (74)
 35 COG5598 Trimethylamine:corrino  50.4      53  0.0011   31.3   6.2  118  282-443    52-172 (526)
 36 PF12508 DUF3714:  Protein of u  47.9      17 0.00036   30.2   2.5   43  329-374    51-94  (200)
 37 KOG3506 40S ribosomal protein   46.8     8.8 0.00019   23.6   0.6   10  413-422    13-22  (56)
 38 PF05952 ComX:  Bacillus compet  46.2      21 0.00047   22.5   2.2   19  294-312     5-23  (57)
 39 PF15330 SIT:  SHP2-interacting  43.4      40 0.00087   24.8   3.6   11   37-47     45-55  (107)
 40 PF05393 Hum_adeno_E3A:  Human   37.9      55  0.0012   22.6   3.3   18    1-18     35-52  (94)
 41 PF06145 Corona_NS1:  Coronavir  37.8      33 0.00071   17.3   1.6   15  464-478    15-29  (29)
 42 KOG3653 Transforming growth fa  37.5 1.2E+02  0.0027   29.0   6.5   47   50-96    210-257 (534)
 43 TIGR03779 Bac_Flav_CT_M Bacter  37.0       8 0.00017   36.0  -1.0   44  329-375   254-298 (410)
 44 PRK05933 type III secretion sy  34.6      46   0.001   29.7   3.2   43  333-375   317-362 (372)
 45 PF09201 SRX:  SRX;  InterPro:   34.2      40 0.00088   25.7   2.4   22  419-440    18-39  (148)
 46 PF12273 RCR:  Chitin synthesis  32.4      64  0.0014   24.7   3.5   15    3-17      6-20  (130)
 47 PF14483 Cut8_M:  Cut8 dimerisa  32.3   1E+02  0.0022   17.6   3.9   25  283-310    10-35  (38)
 48 KOG1412 Aspartate aminotransfe  31.6 1.2E+02  0.0025   27.3   5.1   77  268-346   330-408 (410)
 49 PF13625 Helicase_C_3:  Helicas  30.6 1.3E+02  0.0028   22.9   4.9   40   49-90     74-113 (129)
 50 PF03672 UPF0154:  Uncharacteri  30.3      25 0.00055   22.8   0.8   27    7-33      5-31  (64)
 51 COG2101 SPT15 TATA-box binding  29.3      22 0.00047   28.4   0.4   36  390-425    35-70  (185)
 52 PF00558 Vpu:  Vpu protein;  In  27.7      86  0.0019   21.6   3.0   22    5-26     11-32  (81)
 53 COG1886 FliN Flagellar motor s  27.3      75  0.0016   24.6   3.1   41  335-375    84-126 (136)
 54 PF12444 Sox_N:  Sox developmen  24.0      55  0.0012   22.7   1.6   21  429-449    60-80  (84)
 55 COG3763 Uncharacterized protei  22.9      65  0.0014   21.3   1.6   19   15-33     20-38  (71)
 56 PHA02681 ORF089 virion membran  22.5 1.7E+02  0.0036   20.0   3.5    8   53-60     55-62  (92)
 57 PTZ00218 40S ribosomal protein  22.4      39 0.00084   21.1   0.5   10  413-422    11-20  (54)
 58 PF15240 Pro-rich:  Proline-ric  21.4      66  0.0014   26.0   1.8   12    1-12      1-12  (179)
 59 PF13893 RRM_5:  RNA recognitio  21.0 2.1E+02  0.0046   17.5   4.2   34   56-89      2-39  (56)
 60 cd04516 TBP_eukaryotes eukaryo  20.7      62  0.0013   26.3   1.6   57  390-446    29-87  (174)
 61 PHA03162 hypothetical protein;  20.2      69  0.0015   24.2   1.5   24  415-438     2-25  (135)

No 1  
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=1.1e-84  Score=604.72  Aligned_cols=438  Identities=41%  Similarity=0.745  Sum_probs=388.4

Q ss_pred             CCCCCCCCCCCccccCCCCCCC-CcHHHHHHHHhhCCcEEEeeCCeeEEEecCHHHHHHHHHhCCcccCCCCc-hhhhhh
Q 043641           29 RKLPPGPTPLPIIGNLLELGQK-PHKSLADLAKVHGPIMSLQFGQVTTVVISSAAMAKQVLQDHDTSLCNRNV-PESIRS  106 (478)
Q Consensus        29 ~~~~pgP~~~p~~G~~~~~~~~-~~~~~~~~~~~yG~v~~~~~~~~~~~vv~dp~~~~~i~~~~~~~~~~~~~-~~~~~~  106 (478)
                      .+.||||+++|++||++++... +|+.|.+|+++|||+|++++|..+++||+|+++++|++++++..|++|+. ......
T Consensus        25 ~~lPPGP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~~~~~~~~  104 (489)
T KOG0156|consen   25 RNLPPGPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPDPTATLKY  104 (489)
T ss_pred             CCCCcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCCCCchhhHHH
Confidence            7899999999999999999775 99999999999999999999999999999999999999999999999997 335566


Q ss_pred             hccCCCccccCCCChhHHHHHhHhhhhccchhhhccccCchHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHH
Q 043641          107 IQKDEYGIPWLPVSTKWKKLRKICNLHIFTSQKLDANQDLRPKKIQQLVAFVQDSCRTGEPSDVGQAAFDIVVNFLSNTI  186 (478)
Q Consensus       107 ~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~~vi~~~~  186 (478)
                      ++.++.|++++++|+.||.+||+.....++...++.......++++.+++.+.+ ...+++||+...+..++.++|++++
T Consensus       105 ~~~~~~~i~~a~yG~~Wr~~Rr~~~~~L~~~~~~~~~~~~R~~E~~~l~~~l~~-~~~~~~vdl~~~l~~~~~nvI~~~~  183 (489)
T KOG0156|consen  105 LSYGGKGIVFAPYGDYWREMRRFALTELRSFGRGKSFMEIREEEVDELVKKLSK-SKKGEPVDLSELLDLLVGNVICRML  183 (489)
T ss_pred             hcCCCCceEeCCCcHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHHh-cCCCceeeHHHHHHHHHHHHHHHHH
Confidence            766788999999999999999999888999999999888889999999999987 3333899999999999999999999


Q ss_pred             hccccCCCCcchHHHHHHHHHHHHHhccCCCCccccc-ccccCC-hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 043641          187 FSIDLADPNSDSAREFKDSMWGLMVEAKRPNLSDFFP-MLRKLD-IQGVQRRITRHTIKILEVLDRFIDQRLEQRQQNSF  264 (478)
Q Consensus       187 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  264 (478)
                      ||.++...+++...++.+.+.+.....+...+.+++| ++.+++ ..+..++......++.+++++.|+++++.. +.  
T Consensus       184 fG~rf~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~i~eh~~~~-~~--  260 (489)
T KOG0156|consen  184 FGRRFEEEDEEEFLELKELVEESLELLGSFNLSDYFPFLLRWLDGISGLEKRLKKVSKRLDEFLERIIDEHREKI-GD--  260 (489)
T ss_pred             hCCccccCCchHHHHHHHHHHHHHHHhCCccHHHHhhHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cc--
Confidence            9999998755556779999999999999888999999 677764 335667777777779999999999998865 12  


Q ss_pred             CCcccHHHHHhccccCC--C-CChhhHHHHHH----------------HHHHHhhChHHHHHHHHHHHHhhcCCCCCCcc
Q 043641          265 ADSKDMLDTLLNISESE--D-IDRNDIKFVIL----------------AVTELLNNPEALSKARLELEQKVGKGNLIEES  325 (478)
Q Consensus       265 ~~~~dl~~~ll~~~~~~--~-l~~~~i~~~~~----------------~l~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~  325 (478)
                      ++..|++|.+++..+++  . +|++++...++                ++.+|++||++|+|+++||++++|.++.++.+
T Consensus       261 ~~~~D~vD~lL~~~~~~~~~~~t~~~i~~~~~dl~~AGtdTta~Tl~Wa~a~Ll~~Pev~~K~qeEId~vvG~~r~v~e~  340 (489)
T KOG0156|consen  261 EEGRDFVDALLKLMKEEKAEGLTDDHLKALILDLFLAGTDTTATTLEWAMAELLNNPEVQKKLQEEIDEVVGKGRLVSES  340 (489)
T ss_pred             CCCCcHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCChh
Confidence            22389999999987654  2 89999887765                89999999999999999999999988889999


Q ss_pred             ccCCCccHHHHHHHHhccCCCCCccCccccCCCeeeecEEeCCCCEEEeehhhhccCCCCCCCCCCCCCCcccCCCcCcC
Q 043641          326 DITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSFKLERFLGSDVDVK  405 (478)
Q Consensus       326 ~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~dp~~F~P~R~l~~~~~~~  405 (478)
                      |+.+||||+|+|+|++|++|++|..++|.+.+|+.++||.|||||.|+++.|++||||++|+||++|+||||++.+ +.+
T Consensus       341 D~~~lpYL~Avi~E~~Rl~p~~Pl~~ph~~~~d~~i~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF~PERFl~~~-d~~  419 (489)
T KOG0156|consen  341 DLPKLPYLKAVIKETLRLHPPLPLLLPRETTEDTKIGGYDIPKGTTVLVNLWAIHRDPKVWEDPEEFKPERFLDSN-DGK  419 (489)
T ss_pred             hhccCHHHHHHHHHHHhcCCCccccccccccCCeeEcCEEcCCCCEEEEeehhhhcCCccCCCccccChhhhcCCc-ccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999985 223


Q ss_pred             CCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCCCCCccccccccccCCCeeeeee
Q 043641          406 GRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGNVDMEEKFGITLQKAQPLHVVPI  476 (478)
Q Consensus       406 ~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (478)
                      .....++|||.|+|.|||..+|.+|+.++++.||++|+|++.++    +.++.+.. ++...+.++.+.+.
T Consensus       420 ~~~~~~iPFG~GRR~CpG~~La~~~l~l~la~llq~F~w~~~~~----~~d~~e~~-~~~~~~~pl~~~~~  485 (489)
T KOG0156|consen  420 GLDFKLIPFGSGRRICPGEGLARAELFLFLANLLQRFDWKLPGG----KVDMEEAG-LTLKKKKPLKAVPV  485 (489)
T ss_pred             CCceEecCCCCCcCCCCcHHHHHHHHHHHHHHHHheeeeecCCC----CCCCcccc-cceecCCcceeeee
Confidence            35678999999999999999999999999999999999998876    35666664 77777777776654


No 2  
>PLN03234 cytochrome P450 83B1; Provisional
Probab=100.00  E-value=6.9e-77  Score=573.58  Aligned_cols=465  Identities=29%  Similarity=0.560  Sum_probs=374.1

Q ss_pred             HHHHHHHHHHhhccccCCCCCCCCCCCCCCccccCCCCCC-CCcHHHHHHHHhhCCcEEEeeCCeeEEEecCHHHHHHHH
Q 043641           10 WLLFTWVWVITLRSFSKGSRKLPPGPTPLPIIGNLLELGQ-KPHKSLADLAKVHGPIMSLQFGQVTTVVISSAAMAKQVL   88 (478)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~pgP~~~p~~G~~~~~~~-~~~~~~~~~~~~yG~v~~~~~~~~~~~vv~dp~~~~~i~   88 (478)
                      +++++++++++++.. +++.+.||||+++|++||+..+.. +++.++.+++++||++|++++|+.++++++||+++++|+
T Consensus         9 ~l~~~~~~~~~~~~~-~~~~~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il   87 (499)
T PLN03234          9 ALVAAAAFFFLRSTT-KKSLRLPPGPKGLPIIGNLHQMEKFNPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELL   87 (499)
T ss_pred             HHHHHHHHHHHHHhc-CCCCCCCcCCCCCCeeccHHhcCCCCccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHH
Confidence            333344444444433 345688999999999999988854 788999999999999999999999999999999999999


Q ss_pred             HhCCcccCCCCchhhhhhhccCCCccccCCCChhHHHHHhHhhhhccchhhhccccCchHHHHHHHHHHHHhhccCCCcc
Q 043641           89 QDHDTSLCNRNVPESIRSIQKDEYGIPWLPVSTKWKKLRKICNLHIFTSQKLDANQDLRPKKIQQLVAFVQDSCRTGEPS  168 (478)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~v  168 (478)
                      .++...|..++...........+.++.+...++.|+++|+.+..+.|+..++..+.+.+++.++++++.+....++++++
T Consensus        88 ~~~~~~f~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~Rr~l~~~~f~~~~l~~~~~~i~~~~~~ll~~l~~~~~~~~~v  167 (499)
T PLN03234         88 KTQDLNFTARPLLKGQQTMSYQGRELGFGQYTAYYREMRKMCMVNLFSPNRVASFRPVREEECQRMMDKIYKAADQSGTV  167 (499)
T ss_pred             HhCCccccCCCCchhhhhhccCCCccccCCCcHHHHHHHHHHHHHhcCHHHHHHhHHHHHHHHHHHHHHHHHhccCCCeE
Confidence            98887888887654333322223344455678999999998544899999999999999999999999998665567789


Q ss_pred             cHHHHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHHHHHhccCCCCcccccccccCC-hhcHHHHHHHHHHHHHHH
Q 043641          169 DVGQAAFDIVVNFLSNTIFSIDLADPNSDSAREFKDSMWGLMVEAKRPNLSDFFPMLRKLD-IQGVQRRITRHTIKILEV  247 (478)
Q Consensus       169 d~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~-~~~~~~~~~~~~~~~~~~  247 (478)
                      |+.+.+..+++|+++.++||.+++..+. ...++.+.+...........+...+|++..+. +.+..++..+..+++.++
T Consensus       168 d~~~~~~~~t~dvi~~~~fG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~  246 (499)
T PLN03234        168 DLSELLLSFTNCVVCRQAFGKRYNEYGT-EMKRFIDILYETQALLGTLFFSDLFPYFGFLDNLTGLSARLKKAFKELDTY  246 (499)
T ss_pred             EHHHHHHHHHHHHHHHHHhCCcccccch-hHHHHHHHHHHHHHHcCCCcHHHHhhHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999875432 34556666555544333333344566654431 223345677888889999


Q ss_pred             HHHHHHHHHHHHhhCCCCCcccHHHHHhccccCC----CCChhhHHHHHH----------------HHHHHhhChHHHHH
Q 043641          248 LDRFIDQRLEQRQQNSFADSKDMLDTLLNISESE----DIDRNDIKFVIL----------------AVTELLNNPEALSK  307 (478)
Q Consensus       248 ~~~~i~~~~~~~~~~~~~~~~dl~~~ll~~~~~~----~l~~~~i~~~~~----------------~l~~l~~~p~~~~~  307 (478)
                      +.+.++++++..  ....+..|+++.+++..+++    .++++++..++.                ++++|++||++|++
T Consensus       247 ~~~~i~~~~~~~--~~~~~~~d~l~~l~~~~~~~~~~~~~~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~v~~k  324 (499)
T PLN03234        247 LQELLDETLDPN--RPKQETESFIDLLMQIYKDQPFSIKFTHENVKAMILDIVVPGTDTAAAVVVWAMTYLIKYPEAMKK  324 (499)
T ss_pred             HHHHHHHHHhhc--ccCCCcccHHHHHHHHhhccCcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHhCHHHHHH
Confidence            999998876543  12223568999888754332    478888887655                78999999999999


Q ss_pred             HHHHHHHhhcCCCCCCccccCCCccHHHHHHHHhccCCCCCccCccccCCCeeeecEEeCCCCEEEeehhhhccCCCCC-
Q 043641          308 ARLELEQKVGKGNLIEESDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEITGFIIPKGAQVLVNAWAIGRDTSTW-  386 (478)
Q Consensus       308 l~~Ei~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~-  386 (478)
                      +++|+++++++.+.++++++++|||++|||+|+||++|+++..++|.+.+|++++||.|||||.|+++++++||||++| 
T Consensus       325 l~~Ei~~~~~~~~~~~~~~l~~l~yl~avi~E~lRl~p~~~~~~~R~~~~d~~~~g~~IP~Gt~v~~~~~~~~rd~~~~~  404 (499)
T PLN03234        325 AQDEVRNVIGDKGYVSEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPAKTIIQVNAWAVSRDTAAWG  404 (499)
T ss_pred             HHHHHHHHhCCCCCCCHHHHhcChHHHHHHHHHhccCCCccccCCcccCCCeeECCEEECCCCEEEEehHhhhCCccccc
Confidence            9999999998777789999999999999999999999999987689999999999999999999999999999999999 


Q ss_pred             CCCCCCCCCcccCCCcC--cCCCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCCCCCccccccc
Q 043641          387 DDPYSFKLERFLGSDVD--VKGRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGNVDMEEKFGIT  464 (478)
Q Consensus       387 ~dp~~F~P~R~l~~~~~--~~~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~  464 (478)
                      +||++||||||+++...  ....+..|+|||.|+|.|+|++||++|++++++.|+++|+|++.++.++.........+++
T Consensus       405 ~~P~~F~PeR~l~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~  484 (499)
T PLN03234        405 DNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEIPFANLLYKFDWSLPKGIKPEDIKMDVMTGLA  484 (499)
T ss_pred             CChhhcCchhhcCCCCCcCcCCCcceEeCCCCCCCCCCChHHHHHHHHHHHHHHHHheeeeCCCCCCCCCCCcccccccc
Confidence            89999999999976432  1234568999999999999999999999999999999999999876443445666778999


Q ss_pred             cccCCCeeeeeecC
Q 043641          465 LQKAQPLHVVPIAI  478 (478)
Q Consensus       465 ~~~~~~~~~~~~~~  478 (478)
                      .+++.++.+.++++
T Consensus       485 ~~~~~~~~~~~~~~  498 (499)
T PLN03234        485 MHKKEHLVLAPTKH  498 (499)
T ss_pred             cccCCCeEEEeecC
Confidence            99999999999874


No 3  
>PLN02687 flavonoid 3'-monooxygenase
Probab=100.00  E-value=7.9e-77  Score=573.46  Aligned_cols=464  Identities=39%  Similarity=0.703  Sum_probs=370.4

Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCCCCccccCCCCCCCCcHHHHHHHHhhCCcEEEeeCCeeEEEecCHHHHHHHHHhC
Q 043641           12 LFTWVWVITLRSFSKGSRKLPPGPTPLPIIGNLLELGQKPHKSLADLAKVHGPIMSLQFGQVTTVVISSAAMAKQVLQDH   91 (478)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~pgP~~~p~~G~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~~vv~dp~~~~~i~~~~   91 (478)
                      ++.+++++...+.++++.+.||||.++|++||+..+..+++.++.+|+++||++|++++|++++++++||+++++++.++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~~il~~~   95 (517)
T PLN02687         16 VLVWCLLLRRGGSGKHKRPLPPGPRGWPVLGNLPQLGPKPHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLRTH   95 (517)
T ss_pred             HHHHHHHhccccCCCCCCCCCccCCCCCccccHHhcCCchhHHHHHHHHHhCCeeEEecCCceEEEeCCHHHHHHHHHhc
Confidence            33333333334444555678999999999999988877799999999999999999999999999999999999999988


Q ss_pred             CcccCCCCchhhhhhhccCCCccccCCCChhHHHHHhHhhhhccchhhhccccCchHHHHHHHHHHHHhhccCCCcccHH
Q 043641           92 DTSLCNRNVPESIRSIQKDEYGIPWLPVSTKWKKLRKICNLHIFTSQKLDANQDLRPKKIQQLVAFVQDSCRTGEPSDVG  171 (478)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~  171 (478)
                      ...|.+++.......+...+.+++++.+|+.|+++|+.++.+.|+.++++.+.+.+++.++++++.+.... +++++|+.
T Consensus        96 ~~~f~~r~~~~~~~~~~~~~~~~l~~~~g~~Wk~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~-~~~~vd~~  174 (517)
T PLN02687         96 DANFSNRPPNSGAEHMAYNYQDLVFAPYGPRWRALRKICAVHLFSAKALDDFRHVREEEVALLVRELARQH-GTAPVNLG  174 (517)
T ss_pred             chhhhcCCCccchhhhccCCceeEeCCCCHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHhc-CCCceeHH
Confidence            77888876544333333224466678889999999999975689999999999999999999999997643 45689999


Q ss_pred             HHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHHHHHhccCCCCcccccccccCChhcHHHHHHHHHHHHHHHHHH
Q 043641          172 QAAFDIVVNFLSNTIFSIDLADPN-SDSAREFKDSMWGLMVEAKRPNLSDFFPMLRKLDIQGVQRRITRHTIKILEVLDR  250 (478)
Q Consensus       172 ~~~~~~~~~vi~~~~fG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~  250 (478)
                      .++..+++|+++.++||.++...+ ++....+.+.+..+...........++|++.++......++..+..+.+.+++.+
T Consensus       175 ~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~  254 (517)
T PLN02687        175 QLVNVCTTNALGRAMVGRRVFAGDGDEKAREFKEMVVELMQLAGVFNVGDFVPALRWLDLQGVVGKMKRLHRRFDAMMNG  254 (517)
T ss_pred             HHHHHHHHHHHHHHHhCccccccCCcchHHHHHHHHHHHHHHhccCcHHHHhhhHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999876432 2234566666666655443322334567655443333345566667788888899


Q ss_pred             HHHHHHHHHhhCCCCCcccHHHHHhccccC-------CCCChhhHHHHHH----------------HHHHHhhChHHHHH
Q 043641          251 FIDQRLEQRQQNSFADSKDMLDTLLNISES-------EDIDRNDIKFVIL----------------AVTELLNNPEALSK  307 (478)
Q Consensus       251 ~i~~~~~~~~~~~~~~~~dl~~~ll~~~~~-------~~l~~~~i~~~~~----------------~l~~l~~~p~~~~~  307 (478)
                      .++++++..+. ......|+++.+++..++       ..++++++..++.                ++++|++||++|++
T Consensus       255 ~i~~r~~~~~~-~~~~~~d~l~~ll~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~eTta~~l~~~l~~L~~~P~~~~k  333 (517)
T PLN02687        255 IIEEHKAAGQT-GSEEHKDLLSTLLALKREQQADGEGGRITDTEIKALLLNLFTAGTDTTSSTVEWAIAELIRHPDILKK  333 (517)
T ss_pred             HHHHHHHhccc-cCcccccHHHHHHHhhccccccccccCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHhCHHHHHH
Confidence            99888765321 122356999999986432       2588888876654                89999999999999


Q ss_pred             HHHHHHHhhcCCCCCCccccCCCccHHHHHHHHhccCCCCCccCccccCCCeeeecEEeCCCCEEEeehhhhccCCCCCC
Q 043641          308 ARLELEQKVGKGNLIEESDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWD  387 (478)
Q Consensus       308 l~~Ei~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~  387 (478)
                      +++|++++++.+..++.+++++||||+|||+|+||++|+++..++|.+.+|++++||.|||||.|.++.+++||||++|+
T Consensus       334 l~~Ei~~~~~~~~~~~~~~l~~lpyl~a~i~EtlRl~p~~~~~~~R~~~~d~~~~g~~ip~Gt~v~~~~~~~h~d~~~~~  413 (517)
T PLN02687        334 AQEELDAVVGRDRLVSESDLPQLTYLQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIPKGATLLVNVWAIARDPEQWP  413 (517)
T ss_pred             HHHHHHHHcCCCCCCCHHHhhhCHHHHHHHHHHHccCCCccccccccCCCCeeECCEEECCCCEEEEecHHhcCCcccCC
Confidence            99999999987778899999999999999999999999999877899999999999999999999999999999999999


Q ss_pred             CCCCCCCCcccCCCcCc----CCCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCCCCCcccccc
Q 043641          388 DPYSFKLERFLGSDVDV----KGRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGNVDMEEKFGI  463 (478)
Q Consensus       388 dp~~F~P~R~l~~~~~~----~~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~  463 (478)
                      ||++|+||||++.+...    ...+..|+|||.|+|.|+|++||++|+++++++||++|++++.++..+.+..+.....+
T Consensus       414 dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~  493 (517)
T PLN02687        414 DPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGLRMVTLLTATLVHAFDWELADGQTPDKLNMEEAYGL  493 (517)
T ss_pred             CcccCCchhcCCCCCccccccCCCceeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcceecCCCCCcccCCcccccce
Confidence            99999999999754211    12345899999999999999999999999999999999999987643323344445667


Q ss_pred             ccccCCCeeeeeec
Q 043641          464 TLQKAQPLHVVPIA  477 (478)
Q Consensus       464 ~~~~~~~~~~~~~~  477 (478)
                      ++.++.++.+++|+
T Consensus       494 ~~~~~~~~~~~~~~  507 (517)
T PLN02687        494 TLQRAVPLMVHPRP  507 (517)
T ss_pred             eeecCCCeEEeecc
Confidence            77777778877764


No 4  
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=1.2e-77  Score=548.18  Aligned_cols=456  Identities=25%  Similarity=0.419  Sum_probs=353.1

Q ss_pred             HHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCccccCCCC--CCCCcHHHHHHHHhhCCcEEEeeCCeeEEEecCHHHH
Q 043641            7 CVLWLLFTWVWVITLRSFSKGSRKLPPGPTPLPIIGNLLEL--GQKPHKSLADLAKVHGPIMSLQFGQVTTVVISSAAMA   84 (478)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~pgP~~~p~~G~~~~~--~~~~~~~~~~~~~~yG~v~~~~~~~~~~~vv~dp~~~   84 (478)
                      +++++++++++.++.+.+..+.++.+|+|+++|++||+..+  .+.+.....+...+||+++.++.+-++.++|+|||.+
T Consensus         8 ~l~~~l~~l~y~~~~~~~~yw~rrGi~~~~p~p~~Gn~~~~~~~~~~~~~~~~~~~~~~~~~G~y~~~~p~l~v~D~eli   87 (499)
T KOG0158|consen    8 LLLILLLVLLYLWLRWTYSYWRRRGIPGPKPLPFLGNLPGMLKRERPGDLLLDIYTKYRPVVGIYEGRQPALLVSDPELI   87 (499)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCCcEecHHHHHhccCcHHHHHHHHhcCCCEEEEEecCCcceEecCHHHH
Confidence            33333444555555566667777899999999999999887  2334555555666669999999999999999999999


Q ss_pred             HHHHHhCCcccCCC--CchhhhhhhccCCCccccCCCChhHHHHHhHhhhhccchhhhccccCchHHHHHHHHHHHHhhc
Q 043641           85 KQVLQDHDTSLCNR--NVPESIRSIQKDEYGIPWLPVSTKWKKLRKICNLHIFTSQKLDANQDLRPKKIQQLVAFVQDSC  162 (478)
Q Consensus        85 ~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~  162 (478)
                      ++|+.++...|.++  +....... . .....++...|+.||++|..++ |.|++.+|+.+.+.+++.++++++.+.+..
T Consensus        88 k~I~ik~F~~F~~r~~~~~~d~~~-~-l~~~~Lf~~~g~~WK~lR~~ls-P~Fts~kmk~m~~t~~~~~~~l~~~l~~~~  164 (499)
T KOG0158|consen   88 KEILIKDFDNFYNRKRPIYGDPED-P-LSALNLFFLRGERWKRLRTKLS-PTFTSGKLKKMFPTMEEVGDELVRHLRRKS  164 (499)
T ss_pred             HHHHHHhCccCcCCCCCCcCCCCC-c-ccccCchhccCchHHHHHHhhc-cccchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999984  33322221 1 1234467889999999999998 999999999999999999999999999755


Q ss_pred             cCCCcccHHHHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHHHHHh-ccCCCC----cccccccccCChhcHHHHH
Q 043641          163 RTGEPSDVGQAAFDIVVNFLSNTIFSIDLADPNSDSAREFKDSMWGLMVE-AKRPNL----SDFFPMLRKLDIQGVQRRI  237 (478)
Q Consensus       163 ~~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~P~l~~~~~~~~~~~~  237 (478)
                      ..+..+++.+.+..+|.|+|++++||.+.+...++. ..+...-...... .....+    ...+|.+...      -+.
T Consensus       165 ~~~~~~~~~dl~~~yT~DVI~~~AfG~~~~s~~d~~-~~F~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~------l~~  237 (499)
T KOG0158|consen  165 EGGQEGEIKDLCARYTTDVIGSCAFGLDANSLRDPK-AEFRRMGRRAFFLSRGLFPLKFMLIFLFPKLALP------LRV  237 (499)
T ss_pred             cccCCccHHHHHHHHHHHHHhHhhcccchhhhcCch-HHHHHhhHHHHHHhhccchHhHhHHHHhHHHHHh------hhc
Confidence            444678888999999999999999999998876543 3344322222222 111111    1122222211      011


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccHHHHHhccccCC--------CCChhhHHHHHH----------------
Q 043641          238 TRHTIKILEVLDRFIDQRLEQRQQNSFADSKDMLDTLLNISESE--------DIDRNDIKFVIL----------------  293 (478)
Q Consensus       238 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dl~~~ll~~~~~~--------~l~~~~i~~~~~----------------  293 (478)
                      .....+..+++.+.+.++.+.++.+. ...+|+++.+++...++        .+|.+|+++++.                
T Consensus       238 ~~~~~~~~~~~~~~v~~~v~~R~~~~-~~r~Dfi~lll~~~~~~~~~~~~~~~lt~dei~aQafvFl~AGfeTts~tlsf  316 (499)
T KOG0158|consen  238 KLFPEDVTDFFRKLVNSRVEQREKEN-IERNDFIDLLLDARASDFAKSKSHKALTDDEIAAQAFVFLLAGFETTASTLSF  316 (499)
T ss_pred             ccChHHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHhhcccccccccccccCHHHHHHHHHHHHHhhhHhHHHHHHH
Confidence            12223444555555555544443233 45889999999988531        499999998877                


Q ss_pred             HHHHHhhChHHHHHHHHHHHHhhcCCCCCCccccCCCccHHHHHHHHhccCCCCCccCccccCCCeeee-cEEeCCCCEE
Q 043641          294 AVTELLNNPEALSKARLELEQKVGKGNLIEESDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEIT-GFIIPKGAQV  372 (478)
Q Consensus       294 ~l~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i~-g~~ip~g~~v  372 (478)
                      ++|+||+||++|+|||+||+.++.+...+|++.+.+|+||++||+||||+||+++. +.|.|++|++++ |+.||||+.|
T Consensus       317 ~lYeLA~~PdvQ~kLreEI~~~~~~~~~ltyd~l~~L~YLd~Vi~ETLR~yP~~~~-~~R~C~k~~~i~~~~~i~kG~~V  395 (499)
T KOG0158|consen  317 ALYELAKNPDVQDKLREEIDEVLEEKEGLTYDSLSKLKYLDMVIKETLRLYPPAPF-LNRECTKDYEIPGGFVIPKGTPV  395 (499)
T ss_pred             HHHHHhcChHHHHHHHHHHHHHhcccCCCCHHHHhCCcHHHHHHHHHHhhCCCccc-ccceecCceecCCCeEeCCCCEE
Confidence            89999999999999999999997764449999999999999999999999999999 789999999999 9999999999


Q ss_pred             EeehhhhccCCCCCCCCCCCCCCcccCCCcCcCCCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCC
Q 043641          373 LVNAWAIGRDTSTWDDPYSFKLERFLGSDVDVKGRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTS  452 (478)
Q Consensus       373 ~~~~~~~~~d~~~~~dp~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~  452 (478)
                      +++++++||||++||||++|+||||.+++.+ ...+..|+|||.|||.|+|.+||.+|+|+.|++||++|+++..+ .+.
T Consensus       396 ~Ip~~alH~Dp~~~p~Pe~F~PERF~~~~~~-~~~~~~ylPFG~GPR~CIGmRfa~mq~K~~L~~lL~~f~~~~~~-~t~  473 (499)
T KOG0158|consen  396 MIPTYALHHDPEYWPEPEKFKPERFEEENNK-SRHPGAYLPFGVGPRNCIGMRFALMEAKLALAHLLRNFSFEVCP-TTI  473 (499)
T ss_pred             EeecccccCCcccCCCcccCCCccCCCCccc-ccCCccccCCCCCccccHHHHHHHHHHHHHHHHHHhhCEEecCC-ccc
Confidence            9999999999999999999999999987754 34567999999999999999999999999999999999999887 343


Q ss_pred             CCCCCccccccccccCCCeeeeeec
Q 043641          453 GNVDMEEKFGITLQKAQPLHVVPIA  477 (478)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~  477 (478)
                      .+ ......++++.|+.+|.++..+
T Consensus       474 ~~-~~~~~~~~~l~pk~gi~Lkl~~  497 (499)
T KOG0158|consen  474 IP-LEGDPKGFTLSPKGGIWLKLEP  497 (499)
T ss_pred             Cc-ccCCccceeeecCCceEEEEEe
Confidence            22 2222247788888888887654


No 5  
>PLN02971 tryptophan N-hydroxylase
Probab=100.00  E-value=1.6e-76  Score=572.90  Aligned_cols=446  Identities=26%  Similarity=0.476  Sum_probs=346.4

Q ss_pred             CCCCCCCCCCCCCccccCCCCCC-C-CcHHHHHHHHhhC-CcEEEeeCCeeEEEecCHHHHHHHHHhCCcccCCCCchhh
Q 043641           27 GSRKLPPGPTPLPIIGNLLELGQ-K-PHKSLADLAKVHG-PIMSLQFGQVTTVVISSAAMAKQVLQDHDTSLCNRNVPES  103 (478)
Q Consensus        27 ~~~~~~pgP~~~p~~G~~~~~~~-~-~~~~~~~~~~~yG-~v~~~~~~~~~~~vv~dp~~~~~i~~~~~~~~~~~~~~~~  103 (478)
                      ++.+.||||+++|++||+..+.. . .+.++.+|.++|| ++|++++|++++++|+||+++++++.+++..|++++....
T Consensus        54 r~~~lPPGP~~lPiiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~rp~~~~  133 (543)
T PLN02971         54 KLHPLPPGPTGFPIVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASRPLTYA  133 (543)
T ss_pred             CCCCCCcCCCCCCcccchHHhccCCcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCCCcccc
Confidence            35578999999999999988732 2 3678999999999 7999999999999999999999999988888988875443


Q ss_pred             hhhhccCCCccccCCCChhHHHHHhHhhhhccchhhhccccCchHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHH
Q 043641          104 IRSIQKDEYGIPWLPVSTKWKKLRKICNLHIFTSQKLDANQDLRPKKIQQLVAFVQDSCRTGEPSDVGQAAFDIVVNFLS  183 (478)
Q Consensus       104 ~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~~vi~  183 (478)
                      ...++.+..++++..+|+.|+++|++++.+.++...++.+.+.+++.++.+++.+.+...+++++|+.+.+..+++++++
T Consensus       134 ~~~l~~~~~~~l~~~~G~~Wk~~Rk~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~  213 (543)
T PLN02971        134 QKILSNGYKTCVITPFGEQFKKMRKVIMTEIVCPARHRWLHDNRAEETDHLTAWLYNMVKNSEPVDLRFVTRHYCGNAIK  213 (543)
T ss_pred             hhhccCCCCceEecCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHH
Confidence            33333222345678899999999999975667776676777788888888888887654456789999999999999999


Q ss_pred             HHHhccccCCCC----cchHHHHHHHHHHHHHhcc---CCCCcccccccccCChhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 043641          184 NTIFSIDLADPN----SDSAREFKDSMWGLMVEAK---RPNLSDFFPMLRKLDIQGVQRRITRHTIKILEVLDRFIDQRL  256 (478)
Q Consensus       184 ~~~fG~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  256 (478)
                      .++||.++...+    ++...+..+.+..++....   ...+.+++|++++++..+..+...+..+.+.+++.+.+++++
T Consensus       214 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  293 (543)
T PLN02971        214 RLMFGTRTFSEKTEPDGGPTLEDIEHMDAMFEGLGFTFAFCISDYLPMLTGLDLNGHEKIMRESSAIMDKYHDPIIDERI  293 (543)
T ss_pred             HHHhCCcccccccccccchhHHHHHHHHHHHHHHHhccCCcHHHhCCchhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999874321    1111222333333332211   112345677766542223344555566778888888988876


Q ss_pred             HHHhhCCCCCcccHHHHHhccccCC---CCChhhHHHHHH----------------HHHHHhhChHHHHHHHHHHHHhhc
Q 043641          257 EQRQQNSFADSKDMLDTLLNISESE---DIDRNDIKFVIL----------------AVTELLNNPEALSKARLELEQKVG  317 (478)
Q Consensus       257 ~~~~~~~~~~~~dl~~~ll~~~~~~---~l~~~~i~~~~~----------------~l~~l~~~p~~~~~l~~Ei~~~~~  317 (478)
                      +..+.+......|+++.|++..+++   .++++++..++.                ++++|++||++|+|+++||+++++
T Consensus       294 ~~~~~~~~~~~~d~l~~ll~~~~~~~~~~ls~~~i~~~~~~l~~AG~dTTa~tl~~~l~~La~~Pevq~kl~~EI~~v~g  373 (543)
T PLN02971        294 KMWREGKRTQIEDFLDIFISIKDEAGQPLLTADEIKPTIKELVMAAPDNPSNAVEWAMAEMINKPEILHKAMEEIDRVVG  373 (543)
T ss_pred             HHHhccCCCCCcCHHHHHHhhhcccCCCCCCHHHHHHhHHHHheeccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhC
Confidence            6432122222469999999865432   388888877665                899999999999999999999999


Q ss_pred             CCCCCCccccCCCccHHHHHHHHhccCCCCCccCccccCCCeeeecEEeCCCCEEEeehhhhccCCCCCCCCCCCCCCcc
Q 043641          318 KGNLIEESDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSFKLERF  397 (478)
Q Consensus       318 ~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~dp~~F~P~R~  397 (478)
                      +++.++++++++|||++|||+|+||++|+++..++|.+.+|++++||.|||||.|+++.|++||||++|+||++|+||||
T Consensus       374 ~~~~~t~~d~~~LpYl~avi~E~lRl~p~~~~~~~r~~~~d~~~~G~~IpkGt~v~~~~~~~~~d~~~~~dP~~F~PeRf  453 (543)
T PLN02971        374 KERFVQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERH  453 (543)
T ss_pred             CCCCCCHHHhccCHHHHHHHHHHHhcCCCcccCcceecCCCeeECCEEECCCCEEEECcHHhcCChhhCCCccccCcccC
Confidence            87889999999999999999999999999998788999999999999999999999999999999999999999999999


Q ss_pred             cCCCcCc--CCCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCCCCCccccccccccCCCeeeee
Q 043641          398 LGSDVDV--KGRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGNVDMEEKFGITLQKAQPLHVVP  475 (478)
Q Consensus       398 l~~~~~~--~~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (478)
                      ++++.+.  ...+..|+|||.|+|.|+|++||++|+++++++||++|+|++.++.  .+..+.+.++ +...++++.+.+
T Consensus       454 l~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~  530 (543)
T PLN02971        454 LNECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLARLLQGFKWKLAGSE--TRVELMESSH-DMFLSKPLVMVG  530 (543)
T ss_pred             CCCCccccccCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCEEEeCCCC--CCcchhhhcC-cccccccceeee
Confidence            9754321  1234589999999999999999999999999999999999987653  2356666665 543444554444


No 6  
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=100.00  E-value=7.6e-76  Score=563.01  Aligned_cols=465  Identities=35%  Similarity=0.624  Sum_probs=366.8

Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCCCCCCCCCccccCCCCCCCCcHHHHHHHHhhCCcEEEeeCCeeEEEecCHHHHHHH
Q 043641            8 VLWLLFTWVWVITLRSFSKGSRKLPPGPTPLPIIGNLLELGQKPHKSLADLAKVHGPIMSLQFGQVTTVVISSAAMAKQV   87 (478)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~pgP~~~p~~G~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~~vv~dp~~~~~i   87 (478)
                      +..++..+...++.+....++.+.||||+++|++||+..+..+++.++.+++++||+||++++|++++++++||++++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~pPgp~~~Pl~G~l~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~v   88 (504)
T PLN00110          9 AATLLFFITRFFIRSLLPKPSRKLPPGPRGWPLLGALPLLGNMPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAF   88 (504)
T ss_pred             HHHHHHHHHHHHHHHHhhcccCCCcccCCCCCeeechhhcCCchHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHH
Confidence            33333333333444445666778899999999999998887778999999999999999999999999999999999999


Q ss_pred             HHhCCcccCCCCchhhhhhhccCCCccccCCCChhHHHHHhHhhhhccchhhhccccCchHHHHHHHHHHHHhhccCCCc
Q 043641           88 LQDHDTSLCNRNVPESIRSIQKDEYGIPWLPVSTKWKKLRKICNLHIFTSQKLDANQDLRPKKIQQLVAFVQDSCRTGEP  167 (478)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~  167 (478)
                      +.++...|..++..........++.+.+++.+|+.|+++|+.++.+.|+.++++.+.+.+.+.++.+++.+.+...+|++
T Consensus        89 l~~~~~~f~~r~~~~~~~~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~i~~~~~~~~~~l~~~~~~g~~  168 (504)
T PLN00110         89 LKTLDINFSNRPPNAGATHLAYGAQDMVFADYGPRWKLLRKLSNLHMLGGKALEDWSQVRTVELGHMLRAMLELSQRGEP  168 (504)
T ss_pred             HHhcchhhcCCCCccchhhhccCCCceeeCCCCHHHHHHHHHHHHHhCCHHHHHHhhHHHHHHHHHHHHHHHHhccCCCc
Confidence            99887788887654332222222344567788999999999998568999999999999999999999998765556778


Q ss_pred             ccHHHHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHHHHHhccCCCCcccccccccCChhcHHHHHHHHHHHHHHH
Q 043641          168 SDVGQAAFDIVVNFLSNTIFSIDLADPNSDSAREFKDSMWGLMVEAKRPNLSDFFPMLRKLDIQGVQRRITRHTIKILEV  247 (478)
Q Consensus       168 vd~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~  247 (478)
                      +|+.+++..+++|+|+.++||.++...+.....++.+.+...+.......+..++|++.++......+...+..+.+.++
T Consensus       169 ~~~~~~~~~~~~~vi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~  248 (504)
T PLN00110        169 VVVPEMLTFSMANMIGQVILSRRVFETKGSESNEFKDMVVELMTTAGYFNIGDFIPSIAWMDIQGIERGMKHLHKKFDKL  248 (504)
T ss_pred             EeHHHHHHHHHHHHHHHHHhCCcccccCchhHHHHHHHHHHHHHHhccccHHHHcchHhhhCcchHHHHHHHHHHHHHHH
Confidence            99999999999999999999998732222223556666666554433333335667655442223345556667778888


Q ss_pred             HHHHHHHHHHHHhhCCCCCcccHHHHHhccccC---CCCChhhHHHHHH----------------HHHHHhhChHHHHHH
Q 043641          248 LDRFIDQRLEQRQQNSFADSKDMLDTLLNISES---EDIDRNDIKFVIL----------------AVTELLNNPEALSKA  308 (478)
Q Consensus       248 ~~~~i~~~~~~~~~~~~~~~~dl~~~ll~~~~~---~~l~~~~i~~~~~----------------~l~~l~~~p~~~~~l  308 (478)
                      +.+.++++++..+  ......|+++.+++..++   ..++++++..++.                ++++|++||++|+|+
T Consensus       249 ~~~~i~~~~~~~~--~~~~~~d~l~~ll~~~~~~~~~~l~~~~i~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~~~~kl  326 (504)
T PLN00110        249 LTRMIEEHTASAH--ERKGNPDFLDVVMANQENSTGEKLTLTNIKALLLNLFTAGTDTSSSVIEWSLAEMLKNPSILKRA  326 (504)
T ss_pred             HHHHHHHHHhhcc--ccccCCChhhHHhhcccccCCCCCCHHHHHHHHHhhhcccccchHHHHHHHHHHHHhCHHHHHHH
Confidence            8888887765431  112246899999976432   2588888876654                899999999999999


Q ss_pred             HHHHHHhhcCCCCCCccccCCCccHHHHHHHHhccCCCCCccCccccCCCeeeecEEeCCCCEEEeehhhhccCCCCCCC
Q 043641          309 RLELEQKVGKGNLIEESDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDD  388 (478)
Q Consensus       309 ~~Ei~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~d  388 (478)
                      ++|++++++.+..++++++++||||+|||+||||++|+++..++|.+.+|++++||.|||||.|+++.+++|+||++|+|
T Consensus       327 ~~Ei~~~~~~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~Ip~Gt~V~~~~~~~h~d~~~~~d  406 (504)
T PLN00110        327 HEEMDQVIGRNRRLVESDLPKLPYLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVWEN  406 (504)
T ss_pred             HHHHHHHhCCCCCCCHHHhhcChHHHHHHHHHhcCCCCcccccccccCCCeeeCCEEECCCCEEEEeHHHhcCChhhcCC
Confidence            99999999877778999999999999999999999999998788999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccCCCcCcC---CCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCCCCCcccccccc
Q 043641          389 PYSFKLERFLGSDVDVK---GRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGNVDMEEKFGITL  465 (478)
Q Consensus       389 p~~F~P~R~l~~~~~~~---~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~  465 (478)
                      |++|+||||++.+....   .....|+|||.|+|.|+|++||++|+++++++|+++|++++.++.   +.++....++++
T Consensus       407 P~~F~PeRfl~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~  483 (504)
T PLN00110        407 PEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYILGTLVHSFDWKLPDGV---ELNMDEAFGLAL  483 (504)
T ss_pred             cccCCcccccCCCCcccccCCCeeeEeCCCCCCCCCCcHHHHHHHHHHHHHHHHHhceeecCCCC---ccCccccccccc
Confidence            99999999996542211   123579999999999999999999999999999999999987652   334444566788


Q ss_pred             ccCCCeeeeeec
Q 043641          466 QKAQPLHVVPIA  477 (478)
Q Consensus       466 ~~~~~~~~~~~~  477 (478)
                      +|+.++.+++++
T Consensus       484 ~~~~~~~~~~~~  495 (504)
T PLN00110        484 QKAVPLSAMVTP  495 (504)
T ss_pred             ccCCCceEeecc
Confidence            787777776654


No 7  
>PLN03112 cytochrome P450 family protein; Provisional
Probab=100.00  E-value=2.6e-75  Score=564.14  Aligned_cols=476  Identities=29%  Similarity=0.557  Sum_probs=376.5

Q ss_pred             hhHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCccccCCCCCCCCcHHHHHHHHhhCCcEEEeeCCeeEEEecCH
Q 043641            2 EILISCVLWLLFTWVWVITLRSFSKGSRKLPPGPTPLPIIGNLLELGQKPHKSLADLAKVHGPIMSLQFGQVTTVVISSA   81 (478)
Q Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgP~~~p~~G~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~~vv~dp   81 (478)
                      .++.++++++++.++++.+.++..+++.+.||||+++|++||+..+..+++.++.+++++||++|++++++.+.++++||
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ppgp~~~pl~G~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dp   83 (514)
T PLN03112          4 FLLSLLFSVLIFNVLIWRWLNASMRKSLRLPPGPPRWPIVGNLLQLGPLPHRDLASLCKKYGPLVYLRLGSVDAITTDDP   83 (514)
T ss_pred             hHHHHHHHHHHHHHHHHHHccccccCCCCCccCCCCCCeeeeHHhcCCchHHHHHHHHHHhCCeEEEEecCccEEEECCH
Confidence            35566666677777777777777788888999999999999998887778999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCcccCCCCchhhhhhhccCCCccccCCCChhHHHHHhHhhhhccchhhhccccCchHHHHHHHHHHHHhh
Q 043641           82 AMAKQVLQDHDTSLCNRNVPESIRSIQKDEYGIPWLPVSTKWKKLRKICNLHIFTSQKLDANQDLRPKKIQQLVAFVQDS  161 (478)
Q Consensus        82 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~  161 (478)
                      +++++|+.++...|++++.........++..+.++..+|+.|+++|+.+..+.|+..+++.+.+.+.+.++++++.+.+.
T Consensus        84 e~~~~vl~~~~~~f~~~~~~~~~~~~~~g~~~~~~~~~g~~wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~lv~~l~~~  163 (514)
T PLN03112         84 ELIREILLRQDDVFASRPRTLAAVHLAYGCGDVALAPLGPHWKRMRRICMEHLLTTKRLESFAKHRAEEARHLIQDVWEA  163 (514)
T ss_pred             HHHHHHHHhCCcccccCCCcccceeeccCCCceEeCCCCHHHHHHHHHHHHHhcCHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            99999998888788877654222221222233456778999999999965478999999999999999999999987654


Q ss_pred             ccCCCcccHHHHHHHHHHHHHHHHHhccccCCCCc---chHHHHHHHHHHHHHhccCCCCcccccccccCChhcHHHHHH
Q 043641          162 CRTGEPSDVGQAAFDIVVNFLSNTIFSIDLADPNS---DSAREFKDSMWGLMVEAKRPNLSDFFPMLRKLDIQGVQRRIT  238 (478)
Q Consensus       162 ~~~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~  238 (478)
                      ..+++++|+...+..+++++++.++||.++...+.   +....+...+..+........+..++|++.++......++..
T Consensus       164 ~~~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  243 (514)
T PLN03112        164 AQTGKPVNLREVLGAFSMNNVTRMLLGKQYFGAESAGPKEAMEFMHITHELFRLLGVIYLGDYLPAWRWLDPYGCEKKMR  243 (514)
T ss_pred             hccCCeeeHHHHHHHHHHHHHHHHHcCCccccccccchHHHHHHHHHHHHHHHHcCCCcHHHhChHHHhcCcccHHHHHH
Confidence            44567899999999999999999999998754321   223456666555544333223344567655442223345666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCC-CCCcccHHHHHhccccCC---CCChhhHHHHHH----------------HHHHH
Q 043641          239 RHTIKILEVLDRFIDQRLEQRQQNS-FADSKDMLDTLLNISESE---DIDRNDIKFVIL----------------AVTEL  298 (478)
Q Consensus       239 ~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~dl~~~ll~~~~~~---~l~~~~i~~~~~----------------~l~~l  298 (478)
                      +..+.+.++++..++++++..+... ..+..|+++.+++...++   .++++++..++.                ++++|
T Consensus       244 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTTa~~l~~~l~~L  323 (514)
T PLN03112        244 EVEKRVDEFHDKIIDEHRRARSGKLPGGKDMDFVDVLLSLPGENGKEHMDDVEIKALMQDMIAAATDTSAVTNEWAMAEV  323 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccCCccchHHHHHHHhhccccccCCCHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence            6777888888899888776432111 223469999999854322   478888876554                89999


Q ss_pred             hhChHHHHHHHHHHHHhhcCCCCCCccccCCCccHHHHHHHHhccCCCCCccCccccCCCeeeecEEeCCCCEEEeehhh
Q 043641          299 LNNPEALSKARLELEQKVGKGNLIEESDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEITGFIIPKGAQVLVNAWA  378 (478)
Q Consensus       299 ~~~p~~~~~l~~Ei~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i~g~~ip~g~~v~~~~~~  378 (478)
                      ++||++|+++++||++++++++.++++++++|||++|||+|+||++|+++..++|.+.+|++++||.|||||.|.++.++
T Consensus       324 ~~~P~vq~kl~~Ei~~~~~~~~~~t~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~i~g~~IPkGt~v~~~~~~  403 (514)
T PLN03112        324 IKNPRVLRKIQEELDSVVGRNRMVQESDLVHLNYLRCVVRETFRMHPAGPFLIPHESLRATTINGYYIPAKTRVFINTHG  403 (514)
T ss_pred             HhChHHHHHHHHHHHHhcCCCCcCChhhhccCcHHHHHHHHHhccCCCcccccccccCCCeeEcCEEeCCCCEEEEehHH
Confidence            99999999999999999987777999999999999999999999999999877899999999999999999999999999


Q ss_pred             hccCCCCCCCCCCCCCCcccCCCcC---c-CCCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCC
Q 043641          379 IGRDTSTWDDPYSFKLERFLGSDVD---V-KGRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGN  454 (478)
Q Consensus       379 ~~~d~~~~~dp~~F~P~R~l~~~~~---~-~~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~  454 (478)
                      +||||++|+||++||||||..+++.   . ...+..|+|||.|+|.|+|++||++|+++++++||++|+|++.++.....
T Consensus       404 ~h~d~~~~~dP~~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~  483 (514)
T PLN03112        404 LGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPGAPLGVTMVLMALARLFHCFDWSPPDGLRPED  483 (514)
T ss_pred             hhCCcccCCChhhcCCcccCCCCCCccccccCCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHheeeecCCCCCccc
Confidence            9999999999999999998764321   1 11245799999999999999999999999999999999999876543333


Q ss_pred             CCCccccccccccCCCeeeeeec
Q 043641          455 VDMEEKFGITLQKAQPLHVVPIA  477 (478)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~  477 (478)
                      ......++++.++++++.++.++
T Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~  506 (514)
T PLN03112        484 IDTQEVYGMTMPKAKPLRAVATP  506 (514)
T ss_pred             CCCccccCcccccCCCeEEEeec
Confidence            45555667777777677666553


No 8  
>PLN02966 cytochrome P450 83A1
Probab=100.00  E-value=3.4e-75  Score=560.62  Aligned_cols=471  Identities=30%  Similarity=0.568  Sum_probs=362.1

Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCccccCCCC-CCCCcHHHHHHHHhhCCcEEEeeCCeeEEEecCHH
Q 043641            4 LISCVLWLLFTWVWVITLRSFSKGSRKLPPGPTPLPIIGNLLEL-GQKPHKSLADLAKVHGPIMSLQFGQVTTVVISSAA   82 (478)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgP~~~p~~G~~~~~-~~~~~~~~~~~~~~yG~v~~~~~~~~~~~vv~dp~   82 (478)
                      +++.+++++++.++ +++.+.+++..+.||||+++|++||++.+ ..+++.++.+|+++||++|++++|++++++++||+
T Consensus         4 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~ppgp~~~p~~G~l~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~   82 (502)
T PLN02966          4 IIIGVVALAAVLLF-FLYQKPKTKRYKLPPGPSPLPVIGNLLQLQKLNPQRFFAGWAKKYGPILSYRIGSRTMVVISSAE   82 (502)
T ss_pred             eEEeHHHHHHHHHH-HHHhccccCCCCCCcCCCCCCeeccHHhcCCCChhHHHHHHHHHhCCeEEEecCCCcEEEECCHH
Confidence            34444444444443 33455556667889999999999999888 45789999999999999999999999999999999


Q ss_pred             HHHHHHHhCCcccCCCCchhhhhhhccCCCccccCCCChhHHHHHhHhhhhccchhhhccccCchHHHHHHHHHHHHhhc
Q 043641           83 MAKQVLQDHDTSLCNRNVPESIRSIQKDEYGIPWLPVSTKWKKLRKICNLHIFTSQKLDANQDLRPKKIQQLVAFVQDSC  162 (478)
Q Consensus        83 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~  162 (478)
                      ++++|+.++...|.+++..........+..+..+..+|+.|+++|+.+..+.|+..++..+.+.+.+.++++++.|.+..
T Consensus        83 ~i~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~  162 (502)
T PLN02966         83 LAKELLKTQDVNFADRPPHRGHEFISYGRRDMALNHYTPYYREIRKMGMNHLFSPTRVATFKHVREEEARRMMDKINKAA  162 (502)
T ss_pred             HHHHHHHhCcccccCCCCCccceeeccCcceeeeCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999998777777665433222222222334455679999999999333899999999999999999999999998765


Q ss_pred             cCCCcccHHHHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHHHHHhccCCCCcccccccccCC-hhcHHHHHHHHH
Q 043641          163 RTGEPSDVGQAAFDIVVNFLSNTIFSIDLADPNSDSAREFKDSMWGLMVEAKRPNLSDFFPMLRKLD-IQGVQRRITRHT  241 (478)
Q Consensus       163 ~~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~-~~~~~~~~~~~~  241 (478)
                      ..++.+|+.+++..+++|+++.++||.+++..+. ....+.+.+...........+..++|++..+. +....+......
T Consensus       163 ~~~~~vdl~~~~~~~t~dvi~~~~fG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  241 (502)
T PLN02966        163 DKSEVVDISELMLTFTNSVVCRQAFGKKYNEDGE-EMKRFIKILYGTQSVLGKIFFSDFFPYCGFLDDLSGLTAYMKECF  241 (502)
T ss_pred             cCCCceeHHHHHHHHHHHHHHHHHhCCccCccch-HHHHHHHHHHHHHHHhCcccHHHhhchhhhhhhhccHHHHHHHHH
Confidence            5567899999999999999999999999876533 34556666555544443333444566443221 111222233445


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCCcccHHHHHhccccC----CCCChhhHHHHHH----------------HHHHHhhC
Q 043641          242 IKILEVLDRFIDQRLEQRQQNSFADSKDMLDTLLNISES----EDIDRNDIKFVIL----------------AVTELLNN  301 (478)
Q Consensus       242 ~~~~~~~~~~i~~~~~~~~~~~~~~~~dl~~~ll~~~~~----~~l~~~~i~~~~~----------------~l~~l~~~  301 (478)
                      +...+++.+.++++.+..  ....+..|+++.+++..++    ..++++++..++.                ++++|++|
T Consensus       242 ~~~~~~~~~~i~~~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~eTta~~l~~~l~~L~~~  319 (502)
T PLN02966        242 ERQDTYIQEVVNETLDPK--RVKPETESMIDLLMEIYKEQPFASEFTVDNVKAVILDIVVAGTDTAAAAVVWGMTYLMKY  319 (502)
T ss_pred             HHHHHHHHHHHHHHHhcc--ccccccccHHHHHHHHHhccCcCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhC
Confidence            556677777777655432  1112246899998865433    2578888876543                89999999


Q ss_pred             hHHHHHHHHHHHHhhcCC--CCCCccccCCCccHHHHHHHHhccCCCCCccCccccCCCeeeecEEeCCCCEEEeehhhh
Q 043641          302 PEALSKARLELEQKVGKG--NLIEESDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEITGFIIPKGAQVLVNAWAI  379 (478)
Q Consensus       302 p~~~~~l~~Ei~~~~~~~--~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i~g~~ip~g~~v~~~~~~~  379 (478)
                      |++|+|+++||+++++++  ..++++++++||||+|||+|+||++|+++..++|.+.+|++++||.|||||.|.++.+++
T Consensus       320 P~~q~kl~~Ei~~v~~~~~~~~~~~~dl~~lpyl~avi~E~LRl~p~v~~~~~R~~~~d~~l~g~~IP~Gt~V~~~~~~~  399 (502)
T PLN02966        320 PQVLKKAQAEVREYMKEKGSTFVTEDDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPAGTTVNVNAWAV  399 (502)
T ss_pred             HHHHHHHHHHHHHHhcccCCCcCCHhhccCCcHHHHHHHHHhccCCCcccccCcccCCCeeEccEEECCCCEEEEecccc
Confidence            999999999999998742  357999999999999999999999999998778999999999999999999999999999


Q ss_pred             ccCCCCC-CCCCCCCCCcccCCCcCcCCCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCCCCCc
Q 043641          380 GRDTSTW-DDPYSFKLERFLGSDVDVKGRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGNVDME  458 (478)
Q Consensus       380 ~~d~~~~-~dp~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~~~~~  458 (478)
                      ||||++| |||++|+||||++++.+....+..|+|||+|+|.|+|++||++|++++++.||++|+|++.++.....++.+
T Consensus       400 ~rdp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~el~~~la~ll~~f~i~~~~~~~~~~~~~~  479 (502)
T PLN02966        400 SRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLLLNFNFKLPNGMKPDDINMD  479 (502)
T ss_pred             cCCcccccCChhhCChhhhcCCCCCcCCCcCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhceeeCCCCCCcccCCcc
Confidence            9999999 999999999999754322234568999999999999999999999999999999999999877433344555


Q ss_pred             cccccccccCCCeeeeeecC
Q 043641          459 EKFGITLQKAQPLHVVPIAI  478 (478)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~  478 (478)
                      +..+++..++.+++++.+|+
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~  499 (502)
T PLN02966        480 VMTGLAMHKSQHLKLVPEKV  499 (502)
T ss_pred             cccCeeeccCCCeEEEEEeC
Confidence            66677665555889988875


No 9  
>PLN02183 ferulate 5-hydroxylase
Probab=100.00  E-value=9.9e-75  Score=558.76  Aligned_cols=442  Identities=34%  Similarity=0.649  Sum_probs=348.0

Q ss_pred             CCCCCCCCCCCCccccCCCCCCCCcHHHHHHHHhhCCcEEEeeCCeeEEEecCHHHHHHHHHhCCcccCCCCchhhhhhh
Q 043641           28 SRKLPPGPTPLPIIGNLLELGQKPHKSLADLAKVHGPIMSLQFGQVTTVVISSAAMAKQVLQDHDTSLCNRNVPESIRSI  107 (478)
Q Consensus        28 ~~~~~pgP~~~p~~G~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~~vv~dp~~~~~i~~~~~~~~~~~~~~~~~~~~  107 (478)
                      +.+.||||+++|++|++..+....+.++.+|+++||++|++++|++++++++||+++++|+.++...|+.++........
T Consensus        34 ~~~~ppgp~~~Pl~G~l~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~~~  113 (516)
T PLN02183         34 RLPYPPGPKGLPIIGNMLMMDQLTHRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDSVFSNRPANIAISYL  113 (516)
T ss_pred             CCCCCcCCCCCCeeccHHhcCCcchHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhhhhhcCCCcccchhcc
Confidence            45789999999999999887666778899999999999999999999999999999999999877778777654333323


Q ss_pred             ccCCCccccCCCChhHHHHHhHhhhhccchhhhccccCchHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHh
Q 043641          108 QKDEYGIPWLPVSTKWKKLRKICNLHIFTSQKLDANQDLRPKKIQQLVAFVQDSCRTGEPSDVGQAAFDIVVNFLSNTIF  187 (478)
Q Consensus       108 ~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~~vi~~~~f  187 (478)
                      ..++.+.+++.+|+.|+++|+.+..+.|+.+.++.+.+. .+.++.+++.+..  ..++++|+.+++..+++|+++.++|
T Consensus       114 ~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~-~~~~~~~~~~l~~--~~~~~v~~~~~~~~~~~~vi~~~~f  190 (516)
T PLN02183        114 TYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWASV-RDEVDSMVRSVSS--NIGKPVNIGELIFTLTRNITYRAAF  190 (516)
T ss_pred             ccCCCceEeCCCChHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHh--cCCCcEeHHHHHHHHHHHHHHhHhh
Confidence            222234567788999999999853388999999888875 4678889998864  2467899999999999999999999


Q ss_pred             ccccCCCCcchHHHHHHHHHHHHHhccCCCCcccccccccCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----
Q 043641          188 SIDLADPNSDSAREFKDSMWGLMVEAKRPNLSDFFPMLRKLDIQGVQRRITRHTIKILEVLDRFIDQRLEQRQQN-----  262 (478)
Q Consensus       188 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----  262 (478)
                      |.+.+..    ..++.+.+..............++|++.++......++..+..+.+.+++.+++++++++.+.+     
T Consensus       191 G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  266 (516)
T PLN02183        191 GSSSNEG----QDEFIKILQEFSKLFGAFNVADFIPWLGWIDPQGLNKRLVKARKSLDGFIDDIIDDHIQKRKNQNADND  266 (516)
T ss_pred             cCcccch----HHHHHHHHHHHHHHhCCccHHHhcchhHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence            9976542    2345555555444333333445677765542223345666677788888888888876543211     


Q ss_pred             CCCCcccHHHHHhccccC-------------CCCChhhHHHHHH----------------HHHHHhhChHHHHHHHHHHH
Q 043641          263 SFADSKDMLDTLLNISES-------------EDIDRNDIKFVIL----------------AVTELLNNPEALSKARLELE  313 (478)
Q Consensus       263 ~~~~~~dl~~~ll~~~~~-------------~~l~~~~i~~~~~----------------~l~~l~~~p~~~~~l~~Ei~  313 (478)
                      ......|+++.+++...+             ..++++++..++.                ++++|++||++|+|+++|++
T Consensus       267 ~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~La~~Pevq~kl~~Ei~  346 (516)
T PLN02183        267 SEEAETDMVDDLLAFYSEEAKVNESDDLQNSIKLTRDNIKAIIMDVMFGGTETVASAIEWAMAELMKSPEDLKRVQQELA  346 (516)
T ss_pred             cccccccHHHHHHHhhhccccccccccccccCCCCHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            111246899999974321             1478888765543                89999999999999999999


Q ss_pred             HhhcCCCCCCccccCCCccHHHHHHHHhccCCCCCccCccccCCCeeeecEEeCCCCEEEeehhhhccCCCCCCCCCCCC
Q 043641          314 QKVGKGNLIEESDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSFK  393 (478)
Q Consensus       314 ~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~dp~~F~  393 (478)
                      ++++.++.++++++++||||+|||+|+||++|++|.. .|.+.+|++++||.|||||.|.++.+++||||++|+||++|+
T Consensus       347 ~v~~~~~~~~~~~l~~L~yl~avi~EtlRl~p~~p~~-~r~~~~d~~l~g~~IPkGt~V~~~~~~~hrd~~~~~dP~~F~  425 (516)
T PLN02183        347 DVVGLNRRVEESDLEKLTYLKCTLKETLRLHPPIPLL-LHETAEDAEVAGYFIPKRSRVMINAWAIGRDKNSWEDPDTFK  425 (516)
T ss_pred             HHcCCCCCCCHHHhccChHHHHHHHHHhccCCCccce-eeeccCceeECCEEECCCCEEEEehhhhcCCccccCCccccC
Confidence            9998666789999999999999999999999999985 599999999999999999999999999999999999999999


Q ss_pred             CCcccCCCcCc-CCCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCCCCCccccccccccCCCee
Q 043641          394 LERFLGSDVDV-KGRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGNVDMEEKFGITLQKAQPLH  472 (478)
Q Consensus       394 P~R~l~~~~~~-~~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (478)
                      ||||++++.+. ....+.|+|||.|+|.|+|++||++|+++++|+|+++|++++.++....+......++.+.++.+++.
T Consensus       426 PeRfl~~~~~~~~~~~~~~lpFG~G~R~CiG~~lA~~e~~l~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (516)
T PLN02183        426 PSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMKPSELDMNDVFGLTAPRATRLV  505 (516)
T ss_pred             chhhCCCCCccccCCcceecCCCCCCCCCCChHHHHHHHHHHHHHHHheeEEEcCCCCCCCCCChhhccccccccCCCcE
Confidence            99999755321 22445899999999999999999999999999999999999877643223444444566555666777


Q ss_pred             eeeec
Q 043641          473 VVPIA  477 (478)
Q Consensus       473 ~~~~~  477 (478)
                      +.+++
T Consensus       506 ~~~~~  510 (516)
T PLN02183        506 AVPTY  510 (516)
T ss_pred             EEeec
Confidence            76653


No 10 
>PTZ00404 cytochrome P450; Provisional
Probab=100.00  E-value=2.5e-74  Score=553.37  Aligned_cols=453  Identities=27%  Similarity=0.411  Sum_probs=347.2

Q ss_pred             HHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCccccCCCCCCCCcHHHHHHHHhhCCcEEEeeCCeeEEEecCHHHHH
Q 043641            6 SCVLWLLFTWVWVITLRSFSKGSRKLPPGPTPLPIIGNLLELGQKPHKSLADLAKVHGPIMSLQFGQVTTVVISSAAMAK   85 (478)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pgP~~~p~~G~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~~vv~dp~~~~   85 (478)
                      ..++.+++.+++...++.+++...+.+|||+++|++||+..+..+++..+.+++++||++|++++|+.+.++++||++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~   84 (482)
T PTZ00404          5 NIILFLFIFYIIHNAYKKYKKIHKNELKGPIPIPILGNLHQLGNLPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIR   84 (482)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCeeccHhhhcccHHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHH
Confidence            33334444444445555566677888999999999999988877899999999999999999999999999999999999


Q ss_pred             HHHHhCCcccCCCCchhhhhhhccCCCccccCCCChhHHHHHhHhhhhccchhhhccccCchHHHHHHHHHHHHhhccCC
Q 043641           86 QVLQDHDTSLCNRNVPESIRSIQKDEYGIPWLPVSTKWKKLRKICNLHIFTSQKLDANQDLRPKKIQQLVAFVQDSCRTG  165 (478)
Q Consensus        86 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~  165 (478)
                      +|+.++...|..++.......... +.|+ ++.+|+.|+++|++++ +.|+..+++.+.+.+.+.++.+++.|.+..+.+
T Consensus        85 ~il~~~~~~~~~r~~~~~~~~~~~-~~~l-~~~~g~~w~~~Rk~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~  161 (482)
T PTZ00404         85 EMFVDNFDNFSDRPKIPSIKHGTF-YHGI-VTSSGEYWKRNREIVG-KAMRKTNLKHIYDLLDDQVDVLIESMKKIESSG  161 (482)
T ss_pred             HHHHhcchhhcCCCCcceeeeecc-CCce-eccChHHHHHHHHHHH-HHHhhhccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999877666766654332221112 4454 5678999999999998 999999999999999999999999997654456


Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccccCCCCc---chHHHHHHHHHHHHHhccCCCCcccccccccCChhcHHHHHHHHHH
Q 043641          166 EPSDVGQAAFDIVVNFLSNTIFSIDLADPNS---DSAREFKDSMWGLMVEAKRPNLSDFFPMLRKLDIQGVQRRITRHTI  242 (478)
Q Consensus       166 ~~vd~~~~~~~~~~~vi~~~~fG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~  242 (478)
                      +.+|+..++..+++|+++.++||.+++..++   +....+.+.+..++.......+..+++++... .....+...+..+
T Consensus       162 ~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  240 (482)
T PTZ00404        162 ETFEPRYYLTKFTMSAMFKYIFNEDISFDEDIHNGKLAELMGPMEQVFKDLGSGSLFDVIEITQPL-YYQYLEHTDKNFK  240 (482)
T ss_pred             CccCHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhhHhhhh-hHHHHHHHHHHHH
Confidence            7899999999999999999999998865422   22355666666665544433333333333221 1111122334455


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCcccHHHHHhccccCCCCChhh---HHHH----------------HHHHHHHhhChH
Q 043641          243 KILEVLDRFIDQRLEQRQQNSFADSKDMLDTLLNISESEDIDRND---IKFV----------------ILAVTELLNNPE  303 (478)
Q Consensus       243 ~~~~~~~~~i~~~~~~~~~~~~~~~~dl~~~ll~~~~~~~l~~~~---i~~~----------------~~~l~~l~~~p~  303 (478)
                      .+.+++.+.++++++..   ......|+++.+++..++  .++++   +.++                .+++++|++||+
T Consensus       241 ~~~~~~~~~i~~~~~~~---~~~~~~dll~~ll~~~~~--~~~~~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~  315 (482)
T PTZ00404        241 KIKKFIKEKYHEHLKTI---DPEVPRDLLDLLIKEYGT--NTDDDILSILATILDFFLAGVDTSATSLEWMVLMLCNYPE  315 (482)
T ss_pred             HHHHHHHHHHHHHHHcc---CCCCcccHHHHHHHHhcc--CCcccHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcCcH
Confidence            66666666666554432   112356899999986432  22222   3222                228999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCccccCCCccHHHHHHHHhccCCCCCccCccccCCCeee-ecEEeCCCCEEEeehhhhccC
Q 043641          304 ALSKARLELEQKVGKGNLIEESDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEI-TGFIIPKGAQVLVNAWAIGRD  382 (478)
Q Consensus       304 ~~~~l~~Ei~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i-~g~~ip~g~~v~~~~~~~~~d  382 (478)
                      +|+|+++||+++++++..++++++++||||+|||+||||+||+++..++|.+.+|+++ +||.|||||.|.++.+++|||
T Consensus       316 vq~kl~~Ei~~v~~~~~~~~~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~l~~g~~Ip~Gt~V~~~~~a~hrd  395 (482)
T PTZ00404        316 IQEKAYNEIKSTVNGRNKVLLSDRQSTPYTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIPKDAQILINYYSLGRN  395 (482)
T ss_pred             HHHHHHHHHHHHhcCCCCCCccccccChHHHHHHHHHHHhcCCcccccceeccCCEEecCCeEECCCCEEEeeHHHhhCC
Confidence            9999999999999876678999999999999999999999999997678999999999 999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcccCCCcCcCCCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCCCCCccccc
Q 043641          383 TSTWDDPYSFKLERFLGSDVDVKGRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGNVDMEEKFG  462 (478)
Q Consensus       383 ~~~~~dp~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~  462 (478)
                      |++||||++|+||||++..     ....|+|||+|+|.|+|++||++|+++++++|+++|++++.++.   +.+.....+
T Consensus       396 p~~~~dP~~F~PeRwl~~~-----~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~  467 (482)
T PTZ00404        396 EKYFENPEQFDPSRFLNPD-----SNDAFMPFSIGPRNCVGQQFAQDELYLAFSNIILNFKLKSIDGK---KIDETEEYG  467 (482)
T ss_pred             ccccCCccccCccccCCCC-----CCCceeccCCCCCCCccHHHHHHHHHHHHHHHHHhcEEecCCCC---CCCcccccc
Confidence            9999999999999998642     34589999999999999999999999999999999999987652   233334445


Q ss_pred             cccccCCCeeeeee
Q 043641          463 ITLQKAQPLHVVPI  476 (478)
Q Consensus       463 ~~~~~~~~~~~~~~  476 (478)
                      +++. +.++.++.+
T Consensus       468 ~~~~-~~~~~v~~~  480 (482)
T PTZ00404        468 LTLK-PNKFKVLLE  480 (482)
T ss_pred             eeec-CCCceeeee
Confidence            5555 345555543


No 11 
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=100.00  E-value=4.3e-73  Score=547.76  Aligned_cols=449  Identities=29%  Similarity=0.508  Sum_probs=341.1

Q ss_pred             CCCCCCCCCCCCCCccccCCCCCCC-CcHHHHHHHHhhCCcEEEeeCCeeEEEecCHHHHHHHHHhCCcccCCCCchhhh
Q 043641           26 KGSRKLPPGPTPLPIIGNLLELGQK-PHKSLADLAKVHGPIMSLQFGQVTTVVISSAAMAKQVLQDHDTSLCNRNVPESI  104 (478)
Q Consensus        26 ~~~~~~~pgP~~~p~~G~~~~~~~~-~~~~~~~~~~~yG~v~~~~~~~~~~~vv~dp~~~~~i~~~~~~~~~~~~~~~~~  104 (478)
                      ..+.+.||||+++|++|++..+..+ .+..+.+|+++||+||++++|++++++++||+.+++|+.++...|.+++.....
T Consensus        26 ~~~~~~pPgp~~~p~~g~l~~~~~~~~~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~~il~~~~~~~~~r~~~~~~  105 (503)
T PLN02394         26 GKKLKLPPGPAAVPIFGNWLQVGDDLNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVF  105 (503)
T ss_pred             cCcCCCCcCCCCCCeeeeHHhcCCCchhHHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHHHHHHhCCccccCCCCcchH
Confidence            3456789999999999999888544 578999999999999999999999999999999999998777777776654443


Q ss_pred             hhhccCCCccccCCCChhHHHHHhHhhhhccchhhhccccCchHHHHHHHHHHHHhhcc-CCCcccHHHHHHHHHHHHHH
Q 043641          105 RSIQKDEYGIPWLPVSTKWKKLRKICNLHIFTSQKLDANQDLRPKKIQQLVAFVQDSCR-TGEPSDVGQAAFDIVVNFLS  183 (478)
Q Consensus       105 ~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~vd~~~~~~~~~~~vi~  183 (478)
                      ..+...+.+.+++.+|+.|+++|+.+..+.|+.++++.+.+.+++.++++++.+.+... .++.+|+...+..+++|+++
T Consensus       106 ~~~~g~~~~~l~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~i~~~v~~lv~~l~~~~~~~~~~v~~~~~~~~~~~dvi~  185 (503)
T PLN02394        106 DIFTGKGQDMVFTVYGDHWRKMRRIMTVPFFTNKVVQQYRYGWEEEADLVVEDVRANPEAATEGVVIRRRLQLMMYNIMY  185 (503)
T ss_pred             hHhccCCCceeecCCCHHHHHHHHHHHHHhcChHHHHHhhHHHHHHHHHHHHHHHHhhhccCCcEecHHHHHHHHHHHHH
Confidence            43322233456778899999999998658899999999999999999999999976432 24568999999999999999


Q ss_pred             HHHhccccCCCCcchHHHHHHHHHHHHHhccC--CCCcccccccccCChhcHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Q 043641          184 NTIFSIDLADPNSDSAREFKDSMWGLMVEAKR--PNLSDFFPMLRKLDIQGVQRRITRHTIKILE-VLDRFIDQRLEQRQ  260 (478)
Q Consensus       184 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~  260 (478)
                      .++||.+++..+++....+.............  ..+..++|++... .....+...+....... +...+++++++..+
T Consensus       186 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  264 (503)
T PLN02394        186 RMMFDRRFESEDDPLFLKLKALNGERSRLAQSFEYNYGDFIPILRPF-LRGYLKICQDVKERRLALFKDYFVDERKKLMS  264 (503)
T ss_pred             HHHhCCCcccccchhHHHHHHHHHHHHHHhcccccchhhhchHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999998765443333333332322222111  1223345554332 11112222222222222 33345666554322


Q ss_pred             hC--CCCCcccHHHHHhccccCCCCChhhHHHHH----------------HHHHHHhhChHHHHHHHHHHHHhhcCCCCC
Q 043641          261 QN--SFADSKDMLDTLLNISESEDIDRNDIKFVI----------------LAVTELLNNPEALSKARLELEQKVGKGNLI  322 (478)
Q Consensus       261 ~~--~~~~~~dl~~~ll~~~~~~~l~~~~i~~~~----------------~~l~~l~~~p~~~~~l~~Ei~~~~~~~~~~  322 (478)
                      ..  ......|+++.|++..+++.++++++..++                +++|+|++||++|++|++||+++++.+..+
T Consensus       265 ~~~~~~~~~~d~l~~ll~~~~~~~l~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~v~~~~~~~  344 (503)
T PLN02394        265 AKGMDKEGLKCAIDHILEAQKKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRDELDTVLGPGNQV  344 (503)
T ss_pred             hccCCcchhhhHHHHHHhccccCCCCHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCCCCC
Confidence            11  122347899999987766678888876543                289999999999999999999999876678


Q ss_pred             CccccCCCccHHHHHHHHhccCCCCCccCccccCCCeeeecEEeCCCCEEEeehhhhccCCCCCCCCCCCCCCcccCCCc
Q 043641          323 EESDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSFKLERFLGSDV  402 (478)
Q Consensus       323 ~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~dp~~F~P~R~l~~~~  402 (478)
                      +++++++||||+|||+|+||++|+++...+|.+.+|++++||.|||||.|.++.+++||||++|+||++|+||||+++++
T Consensus       345 ~~~~l~~lpyl~avi~EtlRl~p~~~~~~~r~~~~d~~i~g~~IP~Gt~V~~~~~~~~rd~~~~~~P~~F~PeRwl~~~~  424 (503)
T PLN02394        345 TEPDTHKLPYLQAVVKETLRLHMAIPLLVPHMNLEDAKLGGYDIPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEA  424 (503)
T ss_pred             CHhHHhhCHHHHHHHHHHHhcCCCcccccceecCCCcccCCEEeCCCCEEEEchHHHhCCcccCCCccccCccccCCCCC
Confidence            99999999999999999999999999988899999999999999999999999999999999999999999999997643


Q ss_pred             C--cCCCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCCCCCccccc--cc-cccCCCeeeeeec
Q 043641          403 D--VKGRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGNVDMEEKFG--IT-LQKAQPLHVVPIA  477 (478)
Q Consensus       403 ~--~~~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~  477 (478)
                      +  .......|+|||.|+|.|+|++||++|+++++|+|+++|++++.++.+  ..+..+.++  .. .+...++++.+|.
T Consensus       425 ~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~r~  502 (503)
T PLN02394        425 KVEANGNDFRFLPFGVGRRSCPGIILALPILGIVLGRLVQNFELLPPPGQS--KIDVSEKGGQFSLHIAKHSTVVFKPRS  502 (503)
T ss_pred             cccccCCCCceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHceeEeCCCCC--cCccccccCceeeccCCCceEEeecCC
Confidence            2  122345799999999999999999999999999999999999877632  234444342  33 5556666666663


No 12 
>PLN00168 Cytochrome P450; Provisional
Probab=100.00  E-value=2.1e-72  Score=542.93  Aligned_cols=445  Identities=27%  Similarity=0.458  Sum_probs=341.4

Q ss_pred             cCCCCCCCCCCCCCCccccCCCCC---CCCcHHHHHHHHhhCCcEEEeeCCeeEEEecCHHHHHHHHHhCCcccCCCCch
Q 043641           25 SKGSRKLPPGPTPLPIIGNLLELG---QKPHKSLADLAKVHGPIMSLQFGQVTTVVISSAAMAKQVLQDHDTSLCNRNVP  101 (478)
Q Consensus        25 ~~~~~~~~pgP~~~p~~G~~~~~~---~~~~~~~~~~~~~yG~v~~~~~~~~~~~vv~dp~~~~~i~~~~~~~~~~~~~~  101 (478)
                      .++..+.||||+++|++||+..+.   .+++.++.+|+++||++|++++|+.++++++||+++++++.++...|+.++..
T Consensus        30 ~~~~~~lpPgp~~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~~~~f~~rp~~  109 (519)
T PLN00168         30 GKKGRRLPPGPPAVPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVERGAALADRPAV  109 (519)
T ss_pred             CCCCCCCCcCCCCCcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcCCccccCCcc
Confidence            345667899999999999987653   35788899999999999999999999999999999999999888888887654


Q ss_pred             hhhhhhccCCCccc-cCCCChhHHHHHhHhhhhccchhhhccccCchHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHH
Q 043641          102 ESIRSIQKDEYGIP-WLPVSTKWKKLRKICNLHIFTSQKLDANQDLRPKKIQQLVAFVQDSCRTGEPSDVGQAAFDIVVN  180 (478)
Q Consensus       102 ~~~~~~~~~~~~~~-~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~~  180 (478)
                      .....++. +.+++ +..+|+.|+++||.+..+.|+.++++.+.+.+.+.++++++.+.+....++.+|+.+.+..++.+
T Consensus       110 ~~~~~~~~-~~~~~~~~~~G~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~  188 (519)
T PLN00168        110 ASSRLLGE-SDNTITRSSYGPVWRLLRRNLVAETLHPSRVRLFAPARAWVRRVLVDKLRREAEDAAAPRVVETFQYAMFC  188 (519)
T ss_pred             cchhhhcc-CCCceeCCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Confidence            43333322 22332 23789999999974333999999999999999999999999998654445578999999999999


Q ss_pred             HHHHHHhccccCCCCcchHHHHHHHHHHHHHhc-cCCCCcccccccccCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043641          181 FLSNTIFSIDLADPNSDSAREFKDSMWGLMVEA-KRPNLSDFFPMLRKLDIQGVQRRITRHTIKILEVLDRFIDQRLEQR  259 (478)
Q Consensus       181 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  259 (478)
                      +++.++||.+++...   ...+........... ....+..++|++.+.......++..+..+++.+++..+++++++..
T Consensus       189 ii~~~~fG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  265 (519)
T PLN00168        189 LLVLMCFGERLDEPA---VRAIAAAQRDWLLYVSKKMSVFAFFPAVTKHLFRGRLQKALALRRRQKELFVPLIDARREYK  265 (519)
T ss_pred             HHHHHHcCCCcChhh---HHHHHHHHHHHHHHhcCCCCHHHhCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999876321   223333333222111 1122334566543321122234555677888899999998877643


Q ss_pred             hh--C-C--C----CCcccHHHHHhcccc--C--CCCChhhHHHHHH----------------HHHHHhhChHHHHHHHH
Q 043641          260 QQ--N-S--F----ADSKDMLDTLLNISE--S--EDIDRNDIKFVIL----------------AVTELLNNPEALSKARL  310 (478)
Q Consensus       260 ~~--~-~--~----~~~~dl~~~ll~~~~--~--~~l~~~~i~~~~~----------------~l~~l~~~p~~~~~l~~  310 (478)
                      +.  + .  .    ....|+++.|++...  +  ..++++++..++.                ++++|++||++|+|+++
T Consensus       266 ~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P~~q~kl~~  345 (519)
T PLN00168        266 NHLGQGGEPPKKETTFEHSYVDTLLDIRLPEDGDRALTDDEIVNLCSEFLNAGTDTTSTALQWIMAELVKNPSIQSKLHD  345 (519)
T ss_pred             hhccccCccccccccccccHHHHHHhhhccccccCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            11  0 1  0    114589999997542  1  2589998877654                89999999999999999


Q ss_pred             HHHHhhcCC-CCCCccccCCCccHHHHHHHHhccCCCCCccCccccCCCeeeecEEeCCCCEEEeehhhhccCCCCCCCC
Q 043641          311 ELEQKVGKG-NLIEESDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDP  389 (478)
Q Consensus       311 Ei~~~~~~~-~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~dp  389 (478)
                      ||+.+++++ +.++++++++||||+||++|+||++|+++..++|.+.+|++++||.|||||.|.++.+++||||++||||
T Consensus       346 Ei~~v~~~~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~IpkGt~v~~~~~~~~~d~~~~~~p  425 (519)
T PLN00168        346 EIKAKTGDDQEEVSEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHKAAEDMEVGGYLIPKGATVNFMVAEMGRDEREWERP  425 (519)
T ss_pred             HHHHHhCCCCCCCCHHHhhCChHHHHHHHHHhhcCCCCcccCCccCCCCccCCCEEECCCCEEEEChHHHhcCccccCCc
Confidence            999999753 5689999999999999999999999999987789999999999999999999999999999999999999


Q ss_pred             CCCCCCcccCCCcC-----cCCCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCCCCCccccccc
Q 043641          390 YSFKLERFLGSDVD-----VKGRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGNVDMEEKFGIT  464 (478)
Q Consensus       390 ~~F~P~R~l~~~~~-----~~~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~  464 (478)
                      ++|+||||++.+..     ....+..|+|||.|+|.|+|++||++|+++++++||++|+|++.++.   +.+......++
T Consensus       426 ~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~  502 (519)
T PLN00168        426 MEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGIAMLHLEYFVANMVREFEWKEVPGD---EVDFAEKREFT  502 (519)
T ss_pred             cccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHHccceeCCCC---cCChhhhceeE
Confidence            99999999975321     11234579999999999999999999999999999999999997652   22333333444


Q ss_pred             cccCCCeeeeee
Q 043641          465 LQKAQPLHVVPI  476 (478)
Q Consensus       465 ~~~~~~~~~~~~  476 (478)
                      ..++.++.++++
T Consensus       503 ~~~~~~~~~~~~  514 (519)
T PLN00168        503 TVMAKPLRARLV  514 (519)
T ss_pred             EeecCCcEEEEE
Confidence            545545544443


No 13 
>PLN02655 ent-kaurene oxidase
Probab=100.00  E-value=5.4e-72  Score=533.39  Aligned_cols=436  Identities=24%  Similarity=0.447  Sum_probs=343.4

Q ss_pred             CCCCCCCCccccCCCCC-CCCcHHHHHHHHhhCCcEEEeeCCeeEEEecCHHHHHHHHHhCCcccCCCCchhhhhhhccC
Q 043641           32 PPGPTPLPIIGNLLELG-QKPHKSLADLAKVHGPIMSLQFGQVTTVVISSAAMAKQVLQDHDTSLCNRNVPESIRSIQKD  110 (478)
Q Consensus        32 ~pgP~~~p~~G~~~~~~-~~~~~~~~~~~~~yG~v~~~~~~~~~~~vv~dp~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  110 (478)
                      ||||+++|++||++++. .+++.++.+|+++||++|++++|++++++|+||+++++|+.++...|++++.......+..+
T Consensus         1 ppgp~~lP~iG~l~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~~~~~~~~~~   80 (466)
T PLN02655          1 VPAVPGLPVIGNLLQLKEKKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLSKALTVLTRD   80 (466)
T ss_pred             CcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChhhHHHHHhcC
Confidence            68999999999998884 56899999999999999999999999999999999999999888888887655444433322


Q ss_pred             CCccccCCCChhHHHHHhHhhhhccchhhhccccCchHHHHHHHHHHHHhhcc--CCCcccHHHHHHHHHHHHHHHHHhc
Q 043641          111 EYGIPWLPVSTKWKKLRKICNLHIFTSQKLDANQDLRPKKIQQLVAFVQDSCR--TGEPSDVGQAAFDIVVNFLSNTIFS  188 (478)
Q Consensus       111 ~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~--~~~~vd~~~~~~~~~~~vi~~~~fG  188 (478)
                      +.++.+..+|+.|+++||.+..+.|+...++.+.+.+++.++.+++.+.+...  .++++|+...+..+++|+++.++||
T Consensus        81 ~~~~~~~~~g~~wr~~Rr~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG  160 (466)
T PLN02655         81 KSMVATSDYGDFHKMVKRYVMNNLLGANAQKRFRDTRDMLIENMLSGLHALVKDDPHSPVNFRDVFENELFGLSLIQALG  160 (466)
T ss_pred             CCceeeCCCcHHHHHHHHHHHHHhcCchHHHHhHHHHHHHHHHHHHHHHhhccccCCCceeHHHHHHHHHHHHHHHHHhc
Confidence            22343445699999999877757788888888888888888888888875433  4678999999999999999999999


Q ss_pred             cccCCCCcch-------HHHHHHHHHHHHHhccCCCCcccccccccCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043641          189 IDLADPNSDS-------AREFKDSMWGLMVEAKRPNLSDFFPMLRKLDIQGVQRRITRHTIKILEVLDRFIDQRLEQRQQ  261 (478)
Q Consensus       189 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  261 (478)
                      .+++..+.+.       ...+...+..+........+.+++|++++++.....+...+......+++..+++++++... 
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  239 (466)
T PLN02655        161 EDVESVYVEELGTEISKEEIFDVLVHDMMMCAIEVDWRDFFPYLSWIPNKSFETRVQTTEFRRTAVMKALIKQQKKRIA-  239 (466)
T ss_pred             cccccccccccccchhhHHHHHHHHHHHHHHhCCcchhhhhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence            9877543211       12233333444443333334456776665533223333333344456777788877765432 


Q ss_pred             CCCCCcccHHHHHhccccCCCCChhhHHHHHH----------------HHHHHhhChHHHHHHHHHHHHhhcCCCCCCcc
Q 043641          262 NSFADSKDMLDTLLNISESEDIDRNDIKFVIL----------------AVTELLNNPEALSKARLELEQKVGKGNLIEES  325 (478)
Q Consensus       262 ~~~~~~~dl~~~ll~~~~~~~l~~~~i~~~~~----------------~l~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~  325 (478)
                       ...+..|+++.+++...  .++++++..++.                ++++|++||++|+++++||+.+++.+. ++++
T Consensus       240 -~~~~~~d~l~~ll~~~~--~ls~~~i~~~~~~~~~ag~dtta~~l~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~-~~~~  315 (466)
T PLN02655        240 -RGEERDCYLDFLLSEAT--HLTDEQLMMLVWEPIIEAADTTLVTTEWAMYELAKNPDKQERLYREIREVCGDER-VTEE  315 (466)
T ss_pred             -CCCCcccHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCCC-CCHH
Confidence             22234689999998753  588888876654                799999999999999999999998644 8999


Q ss_pred             ccCCCccHHHHHHHHhccCCCCCccCccccCCCeeeecEEeCCCCEEEeehhhhccCCCCCCCCCCCCCCcccCCCcCcC
Q 043641          326 DITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSFKLERFLGSDVDVK  405 (478)
Q Consensus       326 ~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~dp~~F~P~R~l~~~~~~~  405 (478)
                      ++++||||+||++|+||++|+++...+|.+.+|++++||.|||||.|+++.+++||||++|+||++|+||||++.+... 
T Consensus       316 ~l~~l~yl~a~i~EtlRl~p~~~~~~~r~~~~d~~~~g~~ip~gt~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~~~~-  394 (466)
T PLN02655        316 DLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYES-  394 (466)
T ss_pred             HHhcChHHHHHHHHHhccCCCcCCCCCcccCCCcccCCEEECCCCEEEecHHHhcCCcccCCChhccCccccCCCCccc-
Confidence            9999999999999999999999987789999999999999999999999999999999999999999999999764321 


Q ss_pred             CCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCCCCCccccccccccCCCeeeeeec
Q 043641          406 GRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGNVDMEEKFGITLQKAQPLHVVPIA  477 (478)
Q Consensus       406 ~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (478)
                      .....++|||.|+|.|+|++||++|+++++++||++|++++.++..    +.....+++..+++++.+++++
T Consensus       395 ~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  462 (466)
T PLN02655        395 ADMYKTMAFGAGKRVCAGSLQAMLIACMAIARLVQEFEWRLREGDE----EKEDTVQLTTQKLHPLHAHLKP  462 (466)
T ss_pred             CCcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHeEEEeCCCCc----cccchhheeEeecCCcEEEEee
Confidence            1235799999999999999999999999999999999999976632    1223456777788888877643


No 14 
>PLN02500 cytochrome P450 90B1
Probab=100.00  E-value=2.6e-71  Score=532.58  Aligned_cols=429  Identities=21%  Similarity=0.304  Sum_probs=325.0

Q ss_pred             HhhccccCCCCCCCCCCCCCCccccCCCC-C----CCCcHHHHHHHHhhCCcEEEeeCCeeEEEecCHHHHHHHHHhCCc
Q 043641           19 ITLRSFSKGSRKLPPGPTPLPIIGNLLEL-G----QKPHKSLADLAKVHGPIMSLQFGQVTTVVISSAAMAKQVLQDHDT   93 (478)
Q Consensus        19 ~~~~~~~~~~~~~~pgP~~~p~~G~~~~~-~----~~~~~~~~~~~~~yG~v~~~~~~~~~~~vv~dp~~~~~i~~~~~~   93 (478)
                      ++++...+++.+.||||+++|++||+..+ .    +.++.++.+++++||++|++++|++++++++||+++++++.+++.
T Consensus        27 ~~~~~~~~~~~~~PPgp~~~PiiGn~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~~  106 (490)
T PLN02500         27 LTKRRPKQKRFNLPPGNMGWPFLGETIGYLKPYSATSIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEGR  106 (490)
T ss_pred             hCccccccCCCCCCCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCCC
Confidence            33334445566789999999999997643 1    356778999999999999999999999999999999999998777


Q ss_pred             ccCCCCchhhhhhhccCCCccccCCCChhHHHHHhHhhhhccchhhhcc-ccCchHHHHHHHHHHHHhhccCCCcccHHH
Q 043641           94 SLCNRNVPESIRSIQKDEYGIPWLPVSTKWKKLRKICNLHIFTSQKLDA-NQDLRPKKIQQLVAFVQDSCRTGEPSDVGQ  172 (478)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~-~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~  172 (478)
                      .|+.+........+  ++.++ +..+|+.|+++|+.++ +.|+..+++. +.+.+.+.+..+++.+.    .++.+|+.+
T Consensus       107 ~f~~~~~~~~~~~~--g~~~~-~~~~g~~wr~~Rk~~~-~~f~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~vd~~~  178 (490)
T PLN02500        107 LFECSYPRSIGGIL--GKWSM-LVLVGDMHRDMRSISL-NFLSHARLRTHLLKEVERHTLLVLDSWK----ENSTFSAQD  178 (490)
T ss_pred             eEEeeCchHHHHHh--Ccccc-cccCCHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHHHhC----CCCCEEehH
Confidence            77544332222222  12344 4568999999999998 8999988876 34566666666666654    345799999


Q ss_pred             HHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHHHHHhccCCCCcccccccccCChhcHHHHHHHHHHHHHHHHHHHH
Q 043641          173 AAFDIVVNFLSNTIFSIDLADPNSDSAREFKDSMWGLMVEAKRPNLSDFFPMLRKLDIQGVQRRITRHTIKILEVLDRFI  252 (478)
Q Consensus       173 ~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i  252 (478)
                      .+..++++++++++||.+.+..   ....+.+.+.........  ....+|+.       ..++..+..+.+.+++.+.+
T Consensus       179 ~~~~~~~~vi~~~~fg~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~p~~-------~~~~~~~~~~~~~~~~~~~i  246 (490)
T PLN02500        179 EAKKFTFNLMAKHIMSMDPGEE---ETEQLKKEYVTFMKGVVS--APLNFPGT-------AYRKALKSRATILKFIERKM  246 (490)
T ss_pred             HHHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHHHhhhhc--chhcCCCc-------ccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999975432   123333333333222111  00112321       12345556778888899999


Q ss_pred             HHHHHHHhhCC-CCCcccHHHHHhccccCCCCChhhHHHHHH----------------HHHHHhhChHHHHHHHHHHHHh
Q 043641          253 DQRLEQRQQNS-FADSKDMLDTLLNISESEDIDRNDIKFVIL----------------AVTELLNNPEALSKARLELEQK  315 (478)
Q Consensus       253 ~~~~~~~~~~~-~~~~~dl~~~ll~~~~~~~l~~~~i~~~~~----------------~l~~l~~~p~~~~~l~~Ei~~~  315 (478)
                      +++++..+++. .....|+++.+++..   .++++++.+++.                ++++|++||++|+|+++|++++
T Consensus       247 ~~~~~~~~~~~~~~~~~d~l~~ll~~~---~ls~~~i~~~~~~ll~AG~dTta~tl~~~l~~L~~~Pevq~kl~~Ei~~v  323 (490)
T PLN02500        247 EERIEKLKEEDESVEEDDLLGWVLKHS---NLSTEQILDLILSLLFAGHETSSVAIALAIFFLQGCPKAVQELREEHLEI  323 (490)
T ss_pred             HHHHHhhhcccCCCCcchHHHHHHhcc---CCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence            88776432121 123468999999753   578888776654                8999999999999999999998


Q ss_pred             hc-----CCCCCCccccCCCccHHHHHHHHhccCCCCCccCccccCCCeeeecEEeCCCCEEEeehhhhccCCCCCCCCC
Q 043641          316 VG-----KGNLIEESDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPY  390 (478)
Q Consensus       316 ~~-----~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~dp~  390 (478)
                      ++     .+..++++|+++|||++|||+|+||++|+++. ++|.+.+|++++||.|||||.|+++.+++||||++|+||+
T Consensus       324 ~~~~~~~~~~~~~~~d~~~lpyl~avikEtlRl~P~~~~-~~R~~~~d~~~~G~~IPkGt~V~~~~~~~hrdp~~~~dP~  402 (490)
T PLN02500        324 ARAKKQSGESELNWEDYKKMEFTQCVINETLRLGNVVRF-LHRKALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLYDQPQ  402 (490)
T ss_pred             hhccccCCCCCCCHHHhccCHHHHHHHHHHHhcCCCccC-eeeEeCCCceeCCEEECCCCEEEechhhcccCcccCCCcc
Confidence            64     23458999999999999999999999999998 5799999999999999999999999999999999999999


Q ss_pred             CCCCCcccCCCcCcC------CCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCCCCCccccccc
Q 043641          391 SFKLERFLGSDVDVK------GRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGNVDMEEKFGIT  464 (478)
Q Consensus       391 ~F~P~R~l~~~~~~~------~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~  464 (478)
                      +|+||||++++....      ..+..|+|||.|+|.|+|++||++|+++++++||++|+|++.++..    ...  ...+
T Consensus       403 ~F~PeRfl~~~~~~~~~~~~~~~~~~~lpFG~G~R~CiG~~~A~~el~~~la~ll~~f~~~~~~~~~----~~~--~~~~  476 (490)
T PLN02500        403 LFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAVFIHHLVLNFNWELAEADQ----AFA--FPFV  476 (490)
T ss_pred             ccChhhccCCCcccccccccCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHHHHHHhccEEEEcCCCc----cee--cccc
Confidence            999999997543211      1345799999999999999999999999999999999999877632    111  1222


Q ss_pred             cccCCCeeeeeecC
Q 043641          465 LQKAQPLHVVPIAI  478 (478)
Q Consensus       465 ~~~~~~~~~~~~~~  478 (478)
                       .++.++.+++++|
T Consensus       477 -~~~~~l~~~~~~~  489 (490)
T PLN02500        477 -DFPKGLPIRVRRI  489 (490)
T ss_pred             -cCCCCceEEEEeC
Confidence             3346888888765


No 15 
>PLN02290 cytokinin trans-hydroxylase
Probab=100.00  E-value=1.1e-71  Score=539.07  Aligned_cols=431  Identities=21%  Similarity=0.333  Sum_probs=331.9

Q ss_pred             CCCCCCCCCCCCccccCCCCC-------------------CCCcHHHHHHHHhhCCcEEEeeCCeeEEEecCHHHHHHHH
Q 043641           28 SRKLPPGPTPLPIIGNLLELG-------------------QKPHKSLADLAKVHGPIMSLQFGQVTTVVISSAAMAKQVL   88 (478)
Q Consensus        28 ~~~~~pgP~~~p~~G~~~~~~-------------------~~~~~~~~~~~~~yG~v~~~~~~~~~~~vv~dp~~~~~i~   88 (478)
                      .++.||||+++|++||+..+.                   .+....+.+|+++||++|++++|+.++++++||+++++++
T Consensus        40 ~~~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~v~~il  119 (516)
T PLN02290         40 ERQGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGKRFIYWNGTEPRLCLTETELIKELL  119 (516)
T ss_pred             HHcCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCCeEEEccCCccEEEECCHHHHHHHH
Confidence            456799999999999987763                   2233457889999999999999999999999999999999


Q ss_pred             HhCCcccCCCCchhhhhhhccCCCccccCCCChhHHHHHhHhhhhccchhhhccccCchHHHHHHHHHHHHhhccCC-Cc
Q 043641           89 QDHDTSLCNRNVPESIRSIQKDEYGIPWLPVSTKWKKLRKICNLHIFTSQKLDANQDLRPKKIQQLVAFVQDSCRTG-EP  167 (478)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~  167 (478)
                      .++. .+..++...........+.|+ +..+|+.|+++|++++ +.|+..+++.+.+.+.+.++++++.+.+....+ .+
T Consensus       120 ~~~~-~~~~r~~~~~~~~~~~~g~~l-~~~~g~~Wk~~Rk~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~  196 (516)
T PLN02290        120 TKYN-TVTGKSWLQQQGTKHFIGRGL-LMANGADWYHQRHIAA-PAFMGDRLKGYAGHMVECTKQMLQSLQKAVESGQTE  196 (516)
T ss_pred             hcCC-CCCCCcchhhhHHHHHhcCCc-cccCchHHHHHHhhcc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence            8763 344454321111111124455 5668999999999998 899999999999999999999999997654333 57


Q ss_pred             ccHHHHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHHHHHhccCCCCcccccccccCChhcHHHHHHHHHHHHHHH
Q 043641          168 SDVGQAAFDIVVNFLSNTIFSIDLADPNSDSAREFKDSMWGLMVEAKRPNLSDFFPMLRKLDIQGVQRRITRHTIKILEV  247 (478)
Q Consensus       168 vd~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~  247 (478)
                      +|+.+++..+++|+++.++||.+++..+  ........+........   ....+|++.++ .....+...+..+++.++
T Consensus       197 vd~~~~~~~~~~~vi~~~~fG~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~p~~~~~-p~~~~~~~~~~~~~~~~~  270 (516)
T PLN02290        197 VEIGEYMTRLTADIISRTEFDSSYEKGK--QIFHLLTVLQRLCAQAT---RHLCFPGSRFF-PSKYNREIKSLKGEVERL  270 (516)
T ss_pred             EEhHHHHHHHHHHHHHHHHcCCccccch--HHHHHHHHHHHHHHHhh---hhhcCchhhhC-CChhHHHHHHHHHHHHHH
Confidence            9999999999999999999999875431  11222222222211111   11134544433 222345566667788899


Q ss_pred             HHHHHHHHHHHHhhC-CCCCcccHHHHHhccccC-----CCCChhhHHHHHH----------------HHHHHhhChHHH
Q 043641          248 LDRFIDQRLEQRQQN-SFADSKDMLDTLLNISES-----EDIDRNDIKFVIL----------------AVTELLNNPEAL  305 (478)
Q Consensus       248 ~~~~i~~~~~~~~~~-~~~~~~dl~~~ll~~~~~-----~~l~~~~i~~~~~----------------~l~~l~~~p~~~  305 (478)
                      +.+.++++++..+.+ ......|+++.+++...+     ..++++++.+++.                ++++|++||++|
T Consensus       271 ~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTta~tl~~~l~~L~~~P~vq  350 (516)
T PLN02290        271 LMEIIQSRRDCVEIGRSSSYGDDLLGMLLNEMEKKRSNGFNLNLQLIMDECKTFFFAGHETTALLLTWTLMLLASNPTWQ  350 (516)
T ss_pred             HHHHHHHHHHHhhcccCCCCCCCHHHHHHHhccccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCHHHH
Confidence            999998887654211 112357999999975432     1477777765543                899999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCccccCCCccHHHHHHHHhccCCCCCccCccccCCCeeeecEEeCCCCEEEeehhhhccCCCC
Q 043641          306 SKARLELEQKVGKGNLIEESDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEITGFIIPKGAQVLVNAWAIGRDTST  385 (478)
Q Consensus       306 ~~l~~Ei~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~  385 (478)
                      +|+++||+++++++ .++++++++||||+|||+||||++|+++. ++|.+.+|++++||.|||||.|+++.+++||||++
T Consensus       351 ~kl~~Ei~~v~~~~-~~~~~~l~~lpYl~avi~EtlRl~p~~~~-~~R~~~~d~~i~g~~IP~Gt~V~~~~~~~~rdp~~  428 (516)
T PLN02290        351 DKVRAEVAEVCGGE-TPSVDHLSKLTLLNMVINESLRLYPPATL-LPRMAFEDIKLGDLHIPKGLSIWIPVLAIHHSEEL  428 (516)
T ss_pred             HHHHHHHHHHhCCC-CCCHHHHhcChHHHHHHHHHHHcCCCccc-cceeecCCeeECCEEECCCCEEEecHHHhcCChhh
Confidence            99999999999864 78999999999999999999999999996 78999999999999999999999999999999999


Q ss_pred             C-CCCCCCCCCcccCCCcCcCCCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCCCCCccccccc
Q 043641          386 W-DDPYSFKLERFLGSDVDVKGRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGNVDMEEKFGIT  464 (478)
Q Consensus       386 ~-~dp~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~  464 (478)
                      | +||++|+||||++.+.   .....|+|||.|+|.|+|++||++|++++++.||++|++++.++.+     ......++
T Consensus       429 ~~~dP~~F~PeRfl~~~~---~~~~~~~pFG~G~R~C~G~~lA~~el~l~la~ll~~f~~~~~~~~~-----~~~~~~~~  500 (516)
T PLN02290        429 WGKDANEFNPDRFAGRPF---APGRHFIPFAAGPRNCIGQAFAMMEAKIILAMLISKFSFTISDNYR-----HAPVVVLT  500 (516)
T ss_pred             hCCChhhcCccccCCCCC---CCCCeEecCCCCCCCCccHHHHHHHHHHHHHHHHHhceEeeCCCcc-----cCccceee
Confidence            9 8999999999995421   1234799999999999999999999999999999999999876521     12223578


Q ss_pred             cccCCCeeeeeec
Q 043641          465 LQKAQPLHVVPIA  477 (478)
Q Consensus       465 ~~~~~~~~~~~~~  477 (478)
                      ..|+.++.++.++
T Consensus       501 ~~p~~~~~~~~~~  513 (516)
T PLN02290        501 IKPKYGVQVCLKP  513 (516)
T ss_pred             ecCCCCCeEEEEe
Confidence            8888887777654


No 16 
>PLN03018 homomethionine N-hydroxylase
Probab=100.00  E-value=4.9e-70  Score=523.37  Aligned_cols=421  Identities=27%  Similarity=0.461  Sum_probs=321.0

Q ss_pred             CCCCCCCCCCCCccccCCCCC-CCCc-HHHHHHHHhh-CCcEEEeeCCeeEEEecCHHHHHHHHHhCCcccCCCCchhhh
Q 043641           28 SRKLPPGPTPLPIIGNLLELG-QKPH-KSLADLAKVH-GPIMSLQFGQVTTVVISSAAMAKQVLQDHDTSLCNRNVPESI  104 (478)
Q Consensus        28 ~~~~~pgP~~~p~~G~~~~~~-~~~~-~~~~~~~~~y-G~v~~~~~~~~~~~vv~dp~~~~~i~~~~~~~~~~~~~~~~~  104 (478)
                      ..+.||||+++|++||++.+. ..+. .++.++.++| |+||++++|++++++|+||+.+++++.++...|++++.....
T Consensus        38 ~~~~PPgp~~~P~iGnl~~l~~~~~~~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~~rp~~~~~  117 (534)
T PLN03018         38 SRQLPPGPPGWPILGNLPELIMTRPRSKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLADRPQLSIM  117 (534)
T ss_pred             CCCCCcCCCCCCeeccHHHhccCCCcchhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhcCCCCchhh
Confidence            345799999999999998873 3332 4566677776 799999999999999999999999999888889888765554


Q ss_pred             hhhccCCCccccCCCChhHHHHHhHhhhhcc-chhhhccccCchHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHH
Q 043641          105 RSIQKDEYGIPWLPVSTKWKKLRKICNLHIF-TSQKLDANQDLRPKKIQQLVAFVQDSCRTGEPSDVGQAAFDIVVNFLS  183 (478)
Q Consensus       105 ~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f-~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~~vi~  183 (478)
                      ..++.++.++.+..+|+.|+++|++++ +.| +......+....+..++++++.+.+....++++|+...+..+++++++
T Consensus       118 ~~l~~~~~~i~~~~~G~~Wk~~Rk~l~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~  196 (534)
T PLN03018        118 ETIGDNYKSMGTSPYGEQFMKMKKVIT-TEIMSVKTLNMLEAARTIEADNLIAYIHSMYQRSETVDVRELSRVYGYAVTM  196 (534)
T ss_pred             hhhccCCCceEecCCCHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeHHHHHHHHHHHHHH
Confidence            444332335666667999999999998 554 444444555555667888999987644455679999999999999999


Q ss_pred             HHHhccccCCCC------cchHHHHHHHHH---HHHHhccCCCCccccc-ccccCChhcHHHHHHHHHHHHHHHHHHHHH
Q 043641          184 NTIFSIDLADPN------SDSAREFKDSMW---GLMVEAKRPNLSDFFP-MLRKLDIQGVQRRITRHTIKILEVLDRFID  253 (478)
Q Consensus       184 ~~~fG~~~~~~~------~~~~~~~~~~~~---~~~~~~~~~~~~~~~P-~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~  253 (478)
                      .++||.+++..+      .+....+...+.   ............+.+| |+.........++.......+.+++.++++
T Consensus       197 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~  276 (534)
T PLN03018        197 RMLFGRRHVTKENVFSDDGRLGKAEKHHLEVIFNTLNCLPGFSPVDYVERWLRGWNIDGQEERAKVNVNLVRSYNNPIID  276 (534)
T ss_pred             HHHhCCccccccccccccccchhHHHHHHHHHHHHHHHhCCCcHHHHhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence            999999875421      111111221122   2111111111223344 444221122233444556678888888888


Q ss_pred             HHHHHHhhCCC-CCcccHHHHHhccccCC---CCChhhHHHHHH----------------HHHHHhhChHHHHHHHHHHH
Q 043641          254 QRLEQRQQNSF-ADSKDMLDTLLNISESE---DIDRNDIKFVIL----------------AVTELLNNPEALSKARLELE  313 (478)
Q Consensus       254 ~~~~~~~~~~~-~~~~dl~~~ll~~~~~~---~l~~~~i~~~~~----------------~l~~l~~~p~~~~~l~~Ei~  313 (478)
                      ++++....... ....|+++.+++..+++   .++++++..++.                ++++|++||++|+++++||+
T Consensus       277 ~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~ls~~~i~~~~~~~~~aG~dTta~~l~~~l~~L~~~P~~q~kl~~Ei~  356 (534)
T PLN03018        277 ERVELWREKGGKAAVEDWLDTFITLKDQNGKYLVTPDEIKAQCVEFCIAAIDNPANNMEWTLGEMLKNPEILRKALKELD  356 (534)
T ss_pred             HHHHHhhhccCCCCcccHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            87764321211 22468999999765432   389988876654                79999999999999999999


Q ss_pred             HhhcCCCCCCccccCCCccHHHHHHHHhccCCCCCccCccccCCCeeeecEEeCCCCEEEeehhhhccCCCCCCCCCCCC
Q 043641          314 QKVGKGNLIEESDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSFK  393 (478)
Q Consensus       314 ~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~dp~~F~  393 (478)
                      ++++.++.++.+++.+||||+|||+|+||++|+++...+|.+.+|++++||.|||||.|+++.+++||||++|+||++|+
T Consensus       357 ~v~~~~~~~~~~~~~~lpyl~a~i~EtlRl~p~~~~~~~r~~~~d~~i~G~~IpkGt~V~~~~~~~~~dp~~~~~p~~F~  436 (534)
T PLN03018        357 EVVGKDRLVQESDIPNLNYLKACCRETFRIHPSAHYVPPHVARQDTTLGGYFIPKGSHIHVCRPGLGRNPKIWKDPLVYE  436 (534)
T ss_pred             HHhCCCCCCCHHHhcCCHHHHHHHHHHHhcCCCccccCCcccCCCeeECCEEECCCCEEEEChHHhcCCcccCCCccccC
Confidence            99987778899999999999999999999999999876899999999999999999999999999999999999999999


Q ss_pred             CCcccCCCcCcC-----CCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCC
Q 043641          394 LERFLGSDVDVK-----GRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNK  449 (478)
Q Consensus       394 P~R~l~~~~~~~-----~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~  449 (478)
                      ||||++.+++..     ..+..|+|||.|+|.|+|++||.+|+++++++|+++|++++.++
T Consensus       437 PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~  497 (534)
T PLN03018        437 PERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMVMMLARFLQGFNWKLHQD  497 (534)
T ss_pred             CccCCCCCCccccccccCCCCCccCCCCCCCCCccHHHHHHHHHHHHHHHHHhceEEeCCC
Confidence            999997543211     23457999999999999999999999999999999999998765


No 17 
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=100.00  E-value=1.8e-70  Score=521.08  Aligned_cols=435  Identities=26%  Similarity=0.428  Sum_probs=343.0

Q ss_pred             CCCCCCCCCCCCccccCCCCC---CCCcHHHHHHHHhhCCcEEEeeCCeeEEEecCHHHHHHHHHhCCcccCCCCchh-h
Q 043641           28 SRKLPPGPTPLPIIGNLLELG---QKPHKSLADLAKVHGPIMSLQFGQVTTVVISSAAMAKQVLQDHDTSLCNRNVPE-S  103 (478)
Q Consensus        28 ~~~~~pgP~~~p~~G~~~~~~---~~~~~~~~~~~~~yG~v~~~~~~~~~~~vv~dp~~~~~i~~~~~~~~~~~~~~~-~  103 (478)
                      ....||||.++|++|++..+.   .+...++.++..+||++|+.|+||.++++++||+.+++|+.++...+...+.+. .
T Consensus        33 ~~~~~~gp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~~~  112 (497)
T KOG0157|consen   33 KKKLPPGPPGWPLIGNLLEFLKPLEEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYPES  112 (497)
T ss_pred             HhccCCCCCCCCcccchHHhhcchhHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHHHH
Confidence            456789999999999999883   356778899999999999999999999999999999999976555555554443 4


Q ss_pred             hhhhccCCCccccCCCChhHHHHHhHhhhhccchhhhccccCchHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHH
Q 043641          104 IRSIQKDEYGIPWLPVSTKWKKLRKICNLHIFTSQKLDANQDLRPKKIQQLVAFVQDSCRTGEPSDVGQAAFDIVVNFLS  183 (478)
Q Consensus       104 ~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~~vi~  183 (478)
                      .....  |.|+++.+ |+.|+++|++++ +.|+...++.+...+.+....+...+.... .+..+|+.+.+.++++|+++
T Consensus       113 ~~~~l--G~gll~~~-g~~W~~~Rk~~~-~~f~~~~L~~~~~~~~~~~~~~~~~~~~~~-~~~~vd~~~~~~~~tld~i~  187 (497)
T KOG0157|consen  113 LKPWL--GDGLLFSD-GEKWHKHRKLLT-PAFHFEILKSFVPVFIESSLILLLLLELAA-SGEEVDLQDLLKRLTLDIIC  187 (497)
T ss_pred             HHHHh--cCccccCC-chHHHHHHhhcc-HhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCeEcHHHHHHHHHHHHHH
Confidence            43332  45776555 999999999998 999999999999999888888887777643 33339999999999999999


Q ss_pred             HHHhccccCCCCcchHHHHHHHHHHHHHhccCCCCccccc-ccccCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 043641          184 NTIFSIDLADPNSDSAREFKDSMWGLMVEAKRPNLSDFFP-MLRKLDIQGVQRRITRHTIKILEVLDRFIDQRLEQRQQN  262 (478)
Q Consensus       184 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  262 (478)
                      .++||......+.+...++.+++..+......+.   ..| +..++......++..++.+.+.++++++|++|++..+++
T Consensus       188 ~~~~G~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~iI~~rr~~~~~~  264 (497)
T KOG0157|consen  188 KTAMGPESLDAEGPELFEYVQAFDDLTELISKRI---NLPLGTKFLYGLKSERKLKKARKILHDFLEKIIRERREELEKE  264 (497)
T ss_pred             HHhcCCccccccCCcccHHHHHHHHHHHHHHHHH---cCchhhhHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999933322223334456666664443332211   233 222221122567888999999999999999999875432


Q ss_pred             CC---CCcccHHHHHhccccCCCCChhhHHHHHH----------------HHHHHhhChHHHHHHHHHHHHhhcCCCCC-
Q 043641          263 SF---ADSKDMLDTLLNISESEDIDRNDIKFVIL----------------AVTELLNNPEALSKARLELEQKVGKGNLI-  322 (478)
Q Consensus       263 ~~---~~~~dl~~~ll~~~~~~~l~~~~i~~~~~----------------~l~~l~~~p~~~~~l~~Ei~~~~~~~~~~-  322 (478)
                      ..   ....|+++.+....+ ..++++++.+++.                ++++|+.||++|+++++|++.+++++... 
T Consensus       265 ~~~~~~~~~d~L~~~~~~~~-~~l~~~~i~d~v~tf~faG~DTTss~ltw~l~~La~hP~vq~k~~eEi~~i~~~~~~~~  343 (497)
T KOG0157|consen  265 GSGEEKKRLDFLDTLLLEED-KPLTDEDIRDEVDTFMFAGHDTTSSALTWTLWLLAKHPEVQEKLREEVDEILGNRDDKW  343 (497)
T ss_pred             CCcccchhhhHHHHHHHhcc-CCCCHHHHHHHHHHheeeccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCCC
Confidence            22   346788885333333 5788888776654                89999999999999999999999853322 


Q ss_pred             CccccCCCccHHHHHHHHhccCCCCCccCccccCCCeee-ecEEeCCCCEEEeehhhhccCCCCCC-CCCCCCCCcccCC
Q 043641          323 EESDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEI-TGFIIPKGAQVLVNAWAIGRDTSTWD-DPYSFKLERFLGS  400 (478)
Q Consensus       323 ~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i-~g~~ip~g~~v~~~~~~~~~d~~~~~-dp~~F~P~R~l~~  400 (478)
                      +....++|+||++||+||||+||++|. +.|.+.+|+.+ +||.||||+.|+++.+++|||+.+|+ ||++||||||+++
T Consensus       344 ~~~~~~~m~yl~~vi~EsLRLyppvp~-~~R~~~~d~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~  422 (497)
T KOG0157|consen  344 EVEKLDQMKYLEMVIKESLRLYPPVPL-VARKATKDVKLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDG  422 (497)
T ss_pred             ChhhhhhhHHHHHHHHHHhccCCCCch-hhcccCCCeEcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCC
Confidence            222333699999999999999999998 56999999999 48999999999999999999999995 9999999999976


Q ss_pred             CcCcCCCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCCCCCccccccccccCCCeeeeeec
Q 043641          401 DVDVKGRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGNVDMEEKFGITLQKAQPLHVVPIA  477 (478)
Q Consensus       401 ~~~~~~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (478)
                      ......++++|+|||+|+|.|+|+.||++|||+++++||++|+|++..+.     .......++++++++++|+.++
T Consensus       423 ~~~~~~~~~~fipFsaGpR~CiG~~fA~lemKv~l~~ll~~f~~~~~~~~-----~~~~~~~~~l~~~~gl~v~~~~  494 (497)
T KOG0157|consen  423 EEKAKRHPFAFIPFSAGPRNCIGQKFAMLEMKVVLAHLLRRFRIEPVGGD-----KPKPVPELTLRPKNGLKVKLRP  494 (497)
T ss_pred             CCcCCCCCccccCCCCCcccchhHHHHHHHHHHHHHHHHHheEEEecCCC-----CceeeeEEEEEecCCeEEEEEe
Confidence            54434456899999999999999999999999999999999999988762     1455678899999999998875


No 18 
>PLN02774 brassinosteroid-6-oxidase
Probab=100.00  E-value=4.1e-70  Score=520.02  Aligned_cols=415  Identities=19%  Similarity=0.270  Sum_probs=321.0

Q ss_pred             CCCCCCCCCCCCCCccccCCCCCCCCcHHHHHHHHhhCCcEEEeeCCeeEEEecCHHHHHHHHHhCCcccCCCCchhhhh
Q 043641           26 KGSRKLPPGPTPLPIIGNLLELGQKPHKSLADLAKVHGPIMSLQFGQVTTVVISSAAMAKQVLQDHDTSLCNRNVPESIR  105 (478)
Q Consensus        26 ~~~~~~~pgP~~~p~~G~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~~vv~dp~~~~~i~~~~~~~~~~~~~~~~~~  105 (478)
                      +..++.||||+++|++||++.+.++++.++++++++||++|++++|++++++++||+++++|+.++...|..+.......
T Consensus        27 ~~r~~~ppgp~~~P~~G~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~  106 (463)
T PLN02774         27 YSKKGLPPGTMGWPLFGETTEFLKQGPDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEGKGLVPGYPQSMLD  106 (463)
T ss_pred             cCCCCCCCCCCCCCchhhHHHHHHhhHHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCCCeEEecCCHHHHH
Confidence            34557789999999999998886678889999999999999999999999999999999999987766664333233322


Q ss_pred             hhccCCCccccCCCChhHHHHHhHhhhhccchhhhcc-ccCchHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHH
Q 043641          106 SIQKDEYGIPWLPVSTKWKKLRKICNLHIFTSQKLDA-NQDLRPKKIQQLVAFVQDSCRTGEPSDVGQAAFDIVVNFLSN  184 (478)
Q Consensus       106 ~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~-~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~~vi~~  184 (478)
                      .+  ++.++ ++.+|+.|+++|+.++ +.|+...++. +.+.+.+.++++++.+.    .++++|+...+..+++++++.
T Consensus       107 ~l--g~~~~-~~~~g~~w~~~R~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~  178 (463)
T PLN02774        107 IL--GTCNI-AAVHGSTHRYMRGSLL-SLISPTMIRDHLLPKIDEFMRSHLSGWD----GLKTIDIQEKTKEMALLSALK  178 (463)
T ss_pred             Hh--Cccch-hhcCCHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHhhC----CCCCEEeeHHHHHHHHHHHHH
Confidence            22  22344 5568999999999997 8999988875 57777777777777664    335799999999999999999


Q ss_pred             HHhccccCCCCcchHHHHHHHHHHHHHhccCCCCcccccccccCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 043641          185 TIFSIDLADPNSDSAREFKDSMWGLMVEAKRPNLSDFFPMLRKLDIQGVQRRITRHTIKILEVLDRFIDQRLEQRQQNSF  264 (478)
Q Consensus       185 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  264 (478)
                      ++||.+.+..    ..++.+.+.......  .    .+|.  .+ +....++..+..+.+.+++.+.++++++.    . 
T Consensus       179 ~~~g~~~~~~----~~~~~~~~~~~~~~~--~----~~~~--~l-p~~~~~~~~~~~~~~~~~~~~~i~~r~~~----~-  240 (463)
T PLN02774        179 QIAGTLSKPI----SEEFKTEFFKLVLGT--L----SLPI--DL-PGTNYRSGVQARKNIVRMLRQLIQERRAS----G-  240 (463)
T ss_pred             HHcCCCChHH----HHHHHHHHHHHhccc--c----cCCc--CC-CChhhhHHHHHHHHHHHHHHHHHHHHHhc----C-
Confidence            9999864321    223333333222111  0    1121  11 11123455566778888888888886642    2 


Q ss_pred             CCcccHHHHHhccccCC-CCChhhHHHHHH----------------HHHHHhhChHHHHHHHHHHHHhhcC---CCCCCc
Q 043641          265 ADSKDMLDTLLNISESE-DIDRNDIKFVIL----------------AVTELLNNPEALSKARLELEQKVGK---GNLIEE  324 (478)
Q Consensus       265 ~~~~dl~~~ll~~~~~~-~l~~~~i~~~~~----------------~l~~l~~~p~~~~~l~~Ei~~~~~~---~~~~~~  324 (478)
                      ....|+++.+++..+++ .++++++..++.                ++++|++||++|+|+++|++++++.   +..+++
T Consensus       241 ~~~~d~l~~ll~~~~~~~~~s~~ei~~~~~~ll~Ag~dTt~~~l~w~l~~L~~~P~~q~kl~~Ei~~~~~~~~~~~~~~~  320 (463)
T PLN02774        241 ETHTDMLGYLMRKEGNRYKLTDEEIIDQIITILYSGYETVSTTSMMAVKYLHDHPKALQELRKEHLAIRERKRPEDPIDW  320 (463)
T ss_pred             CCcccHHHHHHhCccCCCCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCCCCCCCH
Confidence            22579999999754433 588888877654                7999999999999999999999863   356899


Q ss_pred             cccCCCccHHHHHHHHhccCCCCCccCccccCCCeeeecEEeCCCCEEEeehhhhccCCCCCCCCCCCCCCcccCCCcCc
Q 043641          325 SDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSFKLERFLGSDVDV  404 (478)
Q Consensus       325 ~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~dp~~F~P~R~l~~~~~~  404 (478)
                      +++++||||+|||+|+||++|+++. ++|.+.+|++++||.||||+.|+++.+.+||||++|+||++|+||||++.+.. 
T Consensus       321 ~~l~~lpyl~a~ikE~lRl~P~v~~-~~R~~~~d~~l~g~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~~~-  398 (463)
T PLN02774        321 NDYKSMRFTRAVIFETSRLATIVNG-VLRKTTQDMELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLDKSLE-  398 (463)
T ss_pred             HHHhcCcHHHHHHHHHHhcCCCCCC-cccccCCCeeECCEEECCCCEEEEehHHhcCCcccCCChhccCchhcCCCCcC-
Confidence            9999999999999999999999986 56999999999999999999999999999999999999999999999965421 


Q ss_pred             CCCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCCCCCccccccccccCCCeeeeeec
Q 043641          405 KGRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGNVDMEEKFGITLQKAQPLHVVPIA  477 (478)
Q Consensus       405 ~~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (478)
                        ....|+|||+|+|.|+|++||++|++++++.||++|++++.++..   .  ....  ++.|++++.+++.+
T Consensus       399 --~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~Ll~~f~~~~~~~~~---~--~~~~--~~~p~~g~~~~~~~  462 (463)
T PLN02774        399 --SHNYFFLFGGGTRLCPGKELGIVEISTFLHYFVTRYRWEEVGGDK---L--MKFP--RVEAPNGLHIRVSP  462 (463)
T ss_pred             --CCccccCcCCCCCcCCcHHHHHHHHHHHHHHHHHhceEEECCCCc---c--ccCC--CCCCCCCceEEeee
Confidence              123699999999999999999999999999999999999977621   1  1111  33366777777653


No 19 
>PF00067 p450:  Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature;  InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=100.00  E-value=4.4e-71  Score=533.96  Aligned_cols=413  Identities=31%  Similarity=0.553  Sum_probs=342.7

Q ss_pred             CCCCCCCCccccCCCCC--CCCcHHHHHHHHhhCCcEEEeeCCeeEEEecCHHHHHHHHHhCCcccCCCCchhhhhh--h
Q 043641           32 PPGPTPLPIIGNLLELG--QKPHKSLADLAKVHGPIMSLQFGQVTTVVISSAAMAKQVLQDHDTSLCNRNVPESIRS--I  107 (478)
Q Consensus        32 ~pgP~~~p~~G~~~~~~--~~~~~~~~~~~~~yG~v~~~~~~~~~~~vv~dp~~~~~i~~~~~~~~~~~~~~~~~~~--~  107 (478)
                      ||||+++|++||++.+.  ++++.++.+++++||+||+++++++++++|+||+.+++|+..+...++.++.......  .
T Consensus         1 Ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~~~~~~~~~~   80 (463)
T PF00067_consen    1 PPGPPPLPILGNLLQFRRKGNPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPRPPWFEIFRG   80 (463)
T ss_dssp             SSCSSSBTTTBTHHHHHTTHHHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHCHHHHHHHHH
T ss_pred             CcCCCCcCceeEHHHhcCCCcHHHHHHHHHHHhCCEEEEeEecccccccccchhhccccccccccccccccccccccccc
Confidence            79999999999999985  6789999999999999999999999999999999999999988777766544333322  1


Q ss_pred             ccCCCccccCCCChhHHHHHhHhhhhccchh-hhccccCchHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHH
Q 043641          108 QKDEYGIPWLPVSTKWKKLRKICNLHIFTSQ-KLDANQDLRPKKIQQLVAFVQDSCRTGEPSDVGQAAFDIVVNFLSNTI  186 (478)
Q Consensus       108 ~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~-~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~~vi~~~~  186 (478)
                      ...+.++ +..+|+.|+.+|+.+. +.|+.. .+ .+.+.+.+.++++++.+.+....++.+|+..+++.+++|+++.++
T Consensus        81 ~~~~~~l-~~~~~~~~~~~R~~~~-~~~~~~~~~-~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~d~i~~~~  157 (463)
T PF00067_consen   81 PFGGKGL-FFSDGERWRRQRRLLA-PAFSSKKIL-KLEPLIDEEAEELIDQLRKKAGSSGPVDLFDWLRRFALDVIGRVL  157 (463)
T ss_dssp             HHTTTSS-TTSSHHHHHHHHHHHH-HHHSHHHHH-HHHHHHHHHHHHHHHHHHHTTTSESEEEHHHHHHHHHHHHHHHHH
T ss_pred             ccccccc-cccccccccccccccc-ccccccccc-ccccccccccccccccccccccccceeeeeccccccccccccccc
Confidence            2235565 5566799999999998 788877 66 899999999999999999876555579999999999999999999


Q ss_pred             hccccCCCCcchHHHHHHHHHHHHHhccCC--CCcccccccccCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 043641          187 FSIDLADPNSDSAREFKDSMWGLMVEAKRP--NLSDFFPMLRKLDIQGVQRRITRHTIKILEVLDRFIDQRLEQRQQNSF  264 (478)
Q Consensus       187 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  264 (478)
                      ||.+++..+++...++.+.+..+.......  .+...+|++.++ +....+...+..+.+.+++.+.++++++....+ .
T Consensus       158 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~  235 (463)
T PF00067_consen  158 FGKDFGSLDDEDFEEFLEAFDELFELLSNFFWNLPFFFPWLKYL-PTPLFRRFKRARDRLRKYIKEIIEERREELDDG-D  235 (463)
T ss_dssp             HSSHHHGTTHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCTS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHSS-S
T ss_pred             ccceeeeccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc-c
Confidence            999988665544455666666554433211  133456766665 444566777778889999999999988766422 2


Q ss_pred             CCcccHHHHHhccc-c-C--CCCChhhHHHHHH----------------HHHHHhhChHHHHHHHHHHHHhhcCCCCCCc
Q 043641          265 ADSKDMLDTLLNIS-E-S--EDIDRNDIKFVIL----------------AVTELLNNPEALSKARLELEQKVGKGNLIEE  324 (478)
Q Consensus       265 ~~~~dl~~~ll~~~-~-~--~~l~~~~i~~~~~----------------~l~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~  324 (478)
                      ....|+++.++... + +  ..++++++..++.                ++++|++||++|+++++||+.+.+++..++.
T Consensus       236 ~~~~d~l~~ll~~~~~~~~~~~ls~~~i~~~~~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~  315 (463)
T PF00067_consen  236 ESRRDLLDSLLQASSDSDGPSGLSDEEIAAELLTLLFAGHDTTASTLSWTLYELAKNPEVQEKLREEIDSVLGDGREITF  315 (463)
T ss_dssp             SSCSSHHHHHHHHHHTTTTTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTTSSSHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34789999999986 2 2  2689988876654                8999999999999999999999977778899


Q ss_pred             cccCCCccHHHHHHHHhccCCCCCccCccccCCCeeeecEEeCCCCEEEeehhhhccCCCCCCCCCCCCCCcccCCCcCc
Q 043641          325 SDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSFKLERFLGSDVDV  404 (478)
Q Consensus       325 ~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~dp~~F~P~R~l~~~~~~  404 (478)
                      +++++||||+|||+||||++|+++..++|.+.+|++++||.|||||.|+++.+++|+||++|+||++|+||||++.+...
T Consensus       316 ~~l~~l~yl~a~i~EtlRl~p~~~~~~~R~~~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~~~  395 (463)
T PF00067_consen  316 EDLSKLPYLDAVIKETLRLYPPVPFSLPRVATEDVTLGGYFIPKGTIVIVSIYALHRDPEYFPDPDEFDPERFLDERGIS  395 (463)
T ss_dssp             HHHGTGHHHHHHHHHHHHHSTSSSTEEEEEESSSEEETTEEEETTSEEEEEHHHHTTSTTTSSSTTS--TTGGBTTTSTB
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999966889999999999999999999999999999999999999999999999987532


Q ss_pred             CCCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCC
Q 043641          405 KGRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNK  449 (478)
Q Consensus       405 ~~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~  449 (478)
                      ......|+|||.|+|.|+|++||++|+++++++||++||+++.++
T Consensus       396 ~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~  440 (463)
T PF00067_consen  396 NRPSFAFLPFGAGPRMCPGRNLAMMEMKVFLAKLLRRFDFELVPG  440 (463)
T ss_dssp             CSSSTTSSTTESSTTS-TTHHHHHHHHHHHHHHHHHHEEEEESTT
T ss_pred             ccccccccccccccccchHHHHHHHHHHHHHHHHHHhCEEEECCC
Confidence            345568999999999999999999999999999999999999776


No 20 
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=2.5e-69  Score=481.58  Aligned_cols=435  Identities=24%  Similarity=0.362  Sum_probs=358.6

Q ss_pred             CCCCCCCCCCCCccccCCCC----CCCCcHHHHHHHHhhCCcEEEe-eCCeeEEEecCHHHHHHHHHhCCcccCCCC-ch
Q 043641           28 SRKLPPGPTPLPIIGNLLEL----GQKPHKSLADLAKVHGPIMSLQ-FGQVTTVVISSAAMAKQVLQDHDTSLCNRN-VP  101 (478)
Q Consensus        28 ~~~~~pgP~~~p~~G~~~~~----~~~~~~~~~~~~~~yG~v~~~~-~~~~~~~vv~dp~~~~~i~~~~~~~~~~~~-~~  101 (478)
                      +-..+|||.++|++|.+..+    ..+.|+.....+++||+||+.. +|+...|++.+|+++..++++++ .++-|+ ..
T Consensus        48 ~~~~IP~p~~~~~l~~l~~~~~~~~~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~EG-~~P~Rp~~~  126 (519)
T KOG0159|consen   48 PFEEIPGPKGLPFLGLLWIWRAGGATKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNEG-KYPFRPLLI  126 (519)
T ss_pred             ChhhcCCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcCC-CCCCccccc
Confidence            33567899999999998733    4578889999999999999999 88899999999999999999765 345564 22


Q ss_pred             hhh---hhhccCCCccccCCCChhHHHHHhHhhhhccchhhhccccCchHHHHHHHHHHHHhhcc---CCCcccHHHHHH
Q 043641          102 ESI---RSIQKDEYGIPWLPVSTKWKKLRKICNLHIFTSQKLDANQDLRPKKIQQLVAFVQDSCR---TGEPSDVGQAAF  175 (478)
Q Consensus       102 ~~~---~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~---~~~~vd~~~~~~  175 (478)
                      ...   ... +++...++..+|+.|++.|..+++..++++..+.|.+.+++.+++++..++...+   ...+.|+...+.
T Consensus       127 ~~w~~~rd~-~~~~~Gl~~~~G~~W~~~Rs~ln~~ll~P~~v~~yl~~l~~V~~DF~~~l~~~r~~~~~~~~~D~~~~l~  205 (519)
T KOG0159|consen  127 EPWVAYRDF-RGGVCGLFLLEGPEWQRLRSALNPLLLQPQAVRRYLPQLNAVSDDFVERLRAQRDPERGELVPDFAQELY  205 (519)
T ss_pred             chhhhhHHh-hccCCCcccCCCHHHHHHHHHhchhhcCHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccchhHHHHHH
Confidence            211   222 2233335788999999999999988899999999999999999999999987765   345789999999


Q ss_pred             HHHHHHHHHHHhccccCCCCc---chHHHHHHHHHHHHHhccCCCCcccccccccCChhcHHHHHHHHHHHHHHHHHHHH
Q 043641          176 DIVVNFLSNTIFSIDLADPNS---DSAREFKDSMWGLMVEAKRPNLSDFFPMLRKLDIQGVQRRITRHTIKILEVLDRFI  252 (478)
Q Consensus       176 ~~~~~vi~~~~fG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i  252 (478)
                      .++++.||.++||.+++....   ++...+.+++..++.......+.  -++++++ .++.++++.++.+.+.++.+..|
T Consensus       206 ~wslEsi~~V~l~~rlG~L~~~~~~~a~~fi~ai~~~F~~s~~l~~~--p~l~r~~-~t~~wk~~~~~~D~i~~~~~~~I  282 (519)
T KOG0159|consen  206 RWSLESICLVLLGTRLGLLGESPPSEAQQFIDAIKKMFESSAQLMLM--PSLWRYF-PTKVWKDFVRAWDQIFDVGDKYI  282 (519)
T ss_pred             HHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHhHHHHHhc--chHHHhC-CChHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999997743   45778888888888776542222  2445555 66678999999999999999999


Q ss_pred             HHHHHHHhhCCCC--CcccHHHHHhccccCCCCChhhHHH----------------HHHHHHHHhhChHHHHHHHHHHHH
Q 043641          253 DQRLEQRQQNSFA--DSKDMLDTLLNISESEDIDRNDIKF----------------VILAVTELLNNPEALSKARLELEQ  314 (478)
Q Consensus       253 ~~~~~~~~~~~~~--~~~dl~~~ll~~~~~~~l~~~~i~~----------------~~~~l~~l~~~p~~~~~l~~Ei~~  314 (478)
                      +.+.++.+++...  +....+-.++...   +++.+++..                ..++||+|++||++|++|++|+..
T Consensus       283 d~~l~~l~~~~~~~~~~~~~l~~~L~~~---~l~~k~~~~~~~dll~aGvDTTs~tl~~~Ly~LarnP~~Q~~L~~Ei~~  359 (519)
T KOG0159|consen  283 DNALEELEKQDSAGSEYTGSLLELLLRK---ELSRKDAKANVMDLLAAGVDTTSNTLLWALYELARNPEVQQRLREEILA  359 (519)
T ss_pred             HHHHHHHHhccccccchhHHHHHHHHHc---cCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence            9998887643331  2233333333332   344444433                334999999999999999999999


Q ss_pred             hhcC-CCCCCccccCCCccHHHHHHHHhccCCCCCccCccccCCCeeeecEEeCCCCEEEeehhhhccCCCCCCCCCCCC
Q 043641          315 KVGK-GNLIEESDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSFK  393 (478)
Q Consensus       315 ~~~~-~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~dp~~F~  393 (478)
                      ++.+ +..++.+++.+||||+||||||+|+||+++. ..|...+|.+++||.|||||.|.++++.+.+||++|++|++|+
T Consensus       360 ~~p~~~~~~~~~~l~~~pyLrAcIKEtlRlyPv~~~-~~R~l~~D~vL~gY~vPagT~V~l~~~~~~r~~~~F~~p~~F~  438 (519)
T KOG0159|consen  360 VLPSGNSELTQKALTNMPYLRACIKETLRLYPVVPG-NGRVLPKDLVLSGYHVPAGTLVVLFLYVLGRNPAYFPDPEEFL  438 (519)
T ss_pred             hCCCcccccchHHHhhCHHHHHHHHhhhceeccccc-cccccchhceeccceecCCCeEEEeehhhccChhhCCCccccC
Confidence            9987 6788999999999999999999999999998 5699999999999999999999999999999999999999999


Q ss_pred             CCcccCCCcCcCCCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCCCCCccccccccccCCCeee
Q 043641          394 LERFLGSDVDVKGRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGNVDMEEKFGITLQKAQPLHV  473 (478)
Q Consensus       394 P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (478)
                      |||||+++. ...+++.++|||.|+|+|+||+||++||.++|++|+++|+++..+.     .++...+.+++.|..++++
T Consensus       439 PeRWL~~~~-~~~~pF~~LPFGfG~R~C~GRRiAElEl~llLarllr~f~V~~~~~-----~pv~~~~~~il~P~~~l~f  512 (519)
T KOG0159|consen  439 PERWLKPST-KTIHPFASLPFGFGPRMCLGRRIAELELHLLLARLLRNFKVEFLHE-----EPVEYVYRFILVPNRPLRF  512 (519)
T ss_pred             hhhhccccc-CCCCCceecCCCCCccccchHHHHHHHHHHHHHHHHHhcceeecCC-----CCccceeEEEEcCCCCcce
Confidence            999999873 2357789999999999999999999999999999999999998774     3667778889999999988


Q ss_pred             eeec
Q 043641          474 VPIA  477 (478)
Q Consensus       474 ~~~~  477 (478)
                      ++++
T Consensus       513 ~f~~  516 (519)
T KOG0159|consen  513 KFRP  516 (519)
T ss_pred             eeee
Confidence            8775


No 21 
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=100.00  E-value=2.8e-68  Score=509.68  Aligned_cols=429  Identities=19%  Similarity=0.276  Sum_probs=318.6

Q ss_pred             CCCCCCCCCCccccCCCCCCCC---cHHHHHHHHhhCCcEE---EeeCCeeEEEecCHHHHHHHHHhCCcccCCCCchhh
Q 043641           30 KLPPGPTPLPIIGNLLELGQKP---HKSLADLAKVHGPIMS---LQFGQVTTVVISSAAMAKQVLQDHDTSLCNRNVPES  103 (478)
Q Consensus        30 ~~~pgP~~~p~~G~~~~~~~~~---~~~~~~~~~~yG~v~~---~~~~~~~~~vv~dp~~~~~i~~~~~~~~~~~~~~~~  103 (478)
                      +..|||.++|++||+..+..+.   ++++.+...+||..++   .++|+.++++|+||+.+++|+.++...|+++.....
T Consensus        31 ~~~p~p~~~pl~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i~~il~~~~~~~~k~~~~~~  110 (500)
T PLN02169         31 HGQPILKNWPFLGMLPGMLHQIPRIYDWTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNIHHILSSNFGNYPKGPEFKK  110 (500)
T ss_pred             CCCCCCCCCCcccchHHHHHccCcHHHHHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHHHHHHhhCcccCCCcHHHHH
Confidence            4578999999999997663222   3333444445887665   578999999999999999999987777776643322


Q ss_pred             hhhhccCCCccccCCCChhHHHHHhHhhhhccchhhhccc--cCchHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHH
Q 043641          104 IRSIQKDEYGIPWLPVSTKWKKLRKICNLHIFTSQKLDAN--QDLRPKKIQQLVAFVQDSCRTGEPSDVGQAAFDIVVNF  181 (478)
Q Consensus       104 ~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~--~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~~v  181 (478)
                      ....  .|.|+ +..+|+.|+++|++++ +.|+..++..+  .+.+.+.++.+++.+.+...+++++|+.+.+..+++|+
T Consensus       111 ~~~~--~g~gl-~~~~g~~Wr~~Rk~l~-p~F~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~dv  186 (500)
T PLN02169        111 IFDV--LGEGI-LTVDFELWEDLRKSNH-ALFHNQDFIELSLSSNKSKLKEGLVPFLDNAAHENIIIDLQDVFMRFMFDT  186 (500)
T ss_pred             HHHh--hcCcc-cccCcHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEeHHHHHHHHHHHH
Confidence            2221  25666 5567999999999998 99998877542  35566777888888876545667899999999999999


Q ss_pred             HHHHHhccccCCCCcc-hHHHHHHHHHHHHHhccCCCCcccccccc----cCChhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 043641          182 LSNTIFSIDLADPNSD-SAREFKDSMWGLMVEAKRPNLSDFFPMLR----KLDIQGVQRRITRHTIKILEVLDRFIDQRL  256 (478)
Q Consensus       182 i~~~~fG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~P~l~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  256 (478)
                      ++.++||.+.+..+.+ ....+.+.+.........   ..+.|++.    .+......++..+..+.+.+++.+.|++++
T Consensus       187 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~r~  263 (500)
T PLN02169        187 SSILMTGYDPMSLSIEMLEVEFGEAADIGEEAIYY---RHFKPVILWRLQNWIGIGLERKMRTALATVNRMFAKIISSRR  263 (500)
T ss_pred             HHhheeCCCccccCCCCCCCHHHHHHHHHHHHHHh---HHhccHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999987643321 112333333322211111   11223211    111123346677888889999999999887


Q ss_pred             HHHhhC--CCCCcccHHHHHhccccC-----CCCChhhHHHHHH----------------HHHHHhhChHHHHHHHHHHH
Q 043641          257 EQRQQN--SFADSKDMLDTLLNISES-----EDIDRNDIKFVIL----------------AVTELLNNPEALSKARLELE  313 (478)
Q Consensus       257 ~~~~~~--~~~~~~dl~~~ll~~~~~-----~~l~~~~i~~~~~----------------~l~~l~~~p~~~~~l~~Ei~  313 (478)
                      +...+.  ......|+++.+++....     ..++++++.+++.                ++++|++||++|+|+++||+
T Consensus       264 ~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~i~~~~~~~l~AG~dTTa~tl~w~l~~La~~Pevq~kl~~Ei~  343 (500)
T PLN02169        264 KEEISRAETEPYSKDALTYYMNVDTSKYKLLKPKKDKFIRDVIFSLVLAGRDTTSSALTWFFWLLSKHPQVMAKIRHEIN  343 (500)
T ss_pred             HHhhccccccCCCcCHHHHHHhccccccccccCCChHHHHHHHHHHHHhchhHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence            642111  111246899999886432     1367777766554                89999999999999999998


Q ss_pred             HhhcCCCCCCccccCCCccHHHHHHHHhccCCCCCccCccccCCCee-eecEEeCCCCEEEeehhhhccCCCCC-CCCCC
Q 043641          314 QKVGKGNLIEESDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVE-ITGFIIPKGAQVLVNAWAIGRDTSTW-DDPYS  391 (478)
Q Consensus       314 ~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~-i~g~~ip~g~~v~~~~~~~~~d~~~~-~dp~~  391 (478)
                      .++      +++++.+||||+||++||||+||++|... |.+.+|.+ ++||.|||||.|+++.+++||||++| +||++
T Consensus       344 ~v~------~~~dl~~L~Yl~avi~EtLRl~P~vp~~~-r~~~~d~~~~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~  416 (500)
T PLN02169        344 TKF------DNEDLEKLVYLHAALSESMRLYPPLPFNH-KAPAKPDVLPSGHKVDAESKIVICIYALGRMRSVWGEDALD  416 (500)
T ss_pred             hhC------CHHHHhcCHHHHHHHHHHHhcCCCCCcCc-eecCCCCCccCCEEECCCCEEEEcHHHhhCCccccCCChhh
Confidence            764      57899999999999999999999999855 76666655 59999999999999999999999999 89999


Q ss_pred             CCCCcccCCCcCcC-CCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCCCCCccccccccccCCC
Q 043641          392 FKLERFLGSDVDVK-GRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGNVDMEEKFGITLQKAQP  470 (478)
Q Consensus       392 F~P~R~l~~~~~~~-~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (478)
                      ||||||++++++.. ..++.|+|||+|+|.|+|++||++|+++++++||++|++++.++.     ++.....+++.|+.+
T Consensus       417 F~PeRfl~~~~~~~~~~~~~~lPFG~GpR~CiG~~~A~~e~k~~la~ll~~f~~~~~~~~-----~~~~~~~~~l~~~~g  491 (500)
T PLN02169        417 FKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEIIKNYDFKVIEGH-----KIEAIPSILLRMKHG  491 (500)
T ss_pred             cCccccCCCCCCccCCCCccccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHCEEEEcCCC-----CcccccceEEecCCC
Confidence            99999997654322 235689999999999999999999999999999999999987652     223345678889998


Q ss_pred             eeeeeec
Q 043641          471 LHVVPIA  477 (478)
Q Consensus       471 ~~~~~~~  477 (478)
                      +.++.++
T Consensus       492 l~l~l~~  498 (500)
T PLN02169        492 LKVTVTK  498 (500)
T ss_pred             EEEEEEe
Confidence            8887764


No 22 
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=100.00  E-value=3.5e-68  Score=514.24  Aligned_cols=435  Identities=20%  Similarity=0.283  Sum_probs=320.4

Q ss_pred             CCCCCCCCCccccCCCCCCCCcHHHHHHHHhh---CCcEEEeeCCeeEEEecCHHHHHHHHHhCCcccCCCCchh-hhhh
Q 043641           31 LPPGPTPLPIIGNLLELGQKPHKSLADLAKVH---GPIMSLQFGQVTTVVISSAAMAKQVLQDHDTSLCNRNVPE-SIRS  106 (478)
Q Consensus        31 ~~pgP~~~p~~G~~~~~~~~~~~~~~~~~~~y---G~v~~~~~~~~~~~vv~dp~~~~~i~~~~~~~~~~~~~~~-~~~~  106 (478)
                      .+|||+++|++||++.+..+ +..+.+|.++|   |++|++++|++++++++||+++++|+.++...|....... ....
T Consensus        31 ~~pgp~~~p~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~~  109 (516)
T PLN03195         31 NRKGPKSWPIIGAALEQLKN-YDRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGEVYHSYMEV  109 (516)
T ss_pred             ccCCCCCCCeecchHHHHhc-cchHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcHhHHHHHHH
Confidence            46899999999998765332 44567787887   8999999999999999999999999987655565443221 1112


Q ss_pred             hccCCCccccCCCChhHHHHHhHhhhhccchhhhccccCch-HHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHH
Q 043641          107 IQKDEYGIPWLPVSTKWKKLRKICNLHIFTSQKLDANQDLR-PKKIQQLVAFVQDSCRTGEPSDVGQAAFDIVVNFLSNT  185 (478)
Q Consensus       107 ~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~~vi~~~  185 (478)
                      .  .+.++ ++.+|+.|+++|+.++ +.|+..+++.+.+.+ .+.++.+++.+.+....++++|+.+++..+++|+++.+
T Consensus       110 ~--~g~~l-~~~~g~~w~~~Rr~l~-~~fs~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~  185 (516)
T PLN03195        110 L--LGDGI-FNVDGELWRKQRKTAS-FEFASKNLRDFSTVVFREYSLKLSSILSQASFANQVVDMQDLFMRMTLDSICKV  185 (516)
T ss_pred             H--hcCee-eccCcHHHHHHHHhcc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEcHHHHHHHHHHHHHHHH
Confidence            1  24454 5678999999999998 899999999888865 66677788777654345678999999999999999999


Q ss_pred             HhccccCCCCcch-HHHHHHHHHHHHHhccCCCCcccccccccCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--
Q 043641          186 IFSIDLADPNSDS-AREFKDSMWGLMVEAKRPNLSDFFPMLRKLDIQGVQRRITRHTIKILEVLDRFIDQRLEQRQQN--  262 (478)
Q Consensus       186 ~fG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--  262 (478)
                      +||.+++..+.+. ...+.+.+.......... +...++.+.........+...+..+.+.+++.+.++++++....+  
T Consensus       186 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  264 (516)
T PLN03195        186 GFGVEIGTLSPSLPENPFAQAFDTANIIVTLR-FIDPLWKLKKFLNIGSEALLSKSIKVVDDFTYSVIRRRKAEMDEARK  264 (516)
T ss_pred             HhCCCccccccCCCccHHHHHHHHHHHHHHHH-HhcchhhHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999987643211 122333333222111000 000111111110111223445566778888888888876653211  


Q ss_pred             -CCCCcccHHHHHhccccC--CCCChhhHHHHHH----------------HHHHHhhChHHHHHHHHHHHHhhcC-----
Q 043641          263 -SFADSKDMLDTLLNISES--EDIDRNDIKFVIL----------------AVTELLNNPEALSKARLELEQKVGK-----  318 (478)
Q Consensus       263 -~~~~~~dl~~~ll~~~~~--~~l~~~~i~~~~~----------------~l~~l~~~p~~~~~l~~Ei~~~~~~-----  318 (478)
                       ......|+++.+++..++  ..++++++.+++.                ++|+|++||++|+||++|+++++++     
T Consensus       265 ~~~~~~~d~l~~ll~~~~~~~~~l~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~  344 (516)
T PLN03195        265 SGKKVKHDILSRFIELGEDPDSNFTDKSLRDIVLNFVIAGRDTTATTLSWFVYMIMMNPHVAEKLYSELKALEKERAKEE  344 (516)
T ss_pred             ccccccccHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcccccc
Confidence             112356899999976543  2588888876654                8999999999999999999987642     


Q ss_pred             ---------------CCCCCccccCCCccHHHHHHHHhccCCCCCccCccccCCCeee-ecEEeCCCCEEEeehhhhccC
Q 043641          319 ---------------GNLIEESDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEI-TGFIIPKGAQVLVNAWAIGRD  382 (478)
Q Consensus       319 ---------------~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i-~g~~ip~g~~v~~~~~~~~~d  382 (478)
                                     +..++++++++||||+|||+||||++|+++.. +|.+.+|.++ +|+.|||||.|.++.+++|||
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~l~~Lpyl~Avi~EtLRl~p~~p~~-~r~~~~d~~~~~G~~IpkGt~V~~~~~~~h~d  423 (516)
T PLN03195        345 DPEDSQSFNQRVTQFAGLLTYDSLGKLQYLHAVITETLRLYPAVPQD-PKGILEDDVLPDGTKVKAGGMVTYVPYSMGRM  423 (516)
T ss_pred             cccccchhhhhcccccCCCCHHHHhcCHHHHHHHHHHhhcCCCCcch-hhhhccCcCcCCCcEECCCCEEEEehHhhccC
Confidence                           24578999999999999999999999999985 5767776665 999999999999999999999


Q ss_pred             CCCC-CCCCCCCCCcccCCCcCcCCCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCCCCCcccc
Q 043641          383 TSTW-DDPYSFKLERFLGSDVDVKGRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGNVDMEEKF  461 (478)
Q Consensus       383 ~~~~-~dp~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~  461 (478)
                      |++| +||++|+||||++.+......+..|+|||+|+|.|+|++||++|++++++.|+++|++++.++.   +  .....
T Consensus       424 p~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFG~G~R~CiG~~lA~~e~~~~la~ll~~f~~~~~~~~---~--~~~~~  498 (516)
T PLN03195        424 EYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCRFFKFQLVPGH---P--VKYRM  498 (516)
T ss_pred             hhhhccChhhcCCcccCCCCCcCCCCCceEeccCCCCCcCcCHHHHHHHHHHHHHHHHHhceeEecCCC---c--ceeee
Confidence            9999 9999999999996432112244579999999999999999999999999999999999987552   2  22233


Q ss_pred             ccccccCCCeeeeeec
Q 043641          462 GITLQKAQPLHVVPIA  477 (478)
Q Consensus       462 ~~~~~~~~~~~~~~~~  477 (478)
                      ..+..|+.++.|++++
T Consensus       499 ~~~~~~~~~~~v~~~~  514 (516)
T PLN03195        499 MTILSMANGLKVTVSR  514 (516)
T ss_pred             eeEEecCCCEEEEEEe
Confidence            4566777777776653


No 23 
>PLN02196 abscisic acid 8'-hydroxylase
Probab=100.00  E-value=1.1e-67  Score=502.79  Aligned_cols=431  Identities=21%  Similarity=0.282  Sum_probs=330.5

Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCccccCCCC-CCCCcHHHHHHHHhhCCcEEEeeCCeeEEEecCHHH
Q 043641            5 ISCVLWLLFTWVWVITLRSFSKGSRKLPPGPTPLPIIGNLLEL-GQKPHKSLADLAKVHGPIMSLQFGQVTTVVISSAAM   83 (478)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgP~~~p~~G~~~~~-~~~~~~~~~~~~~~yG~v~~~~~~~~~~~vv~dp~~   83 (478)
                      +.++.++++++.+...++.......+.||||+++|++||+..+ .++++.++.+++++||++|+++++++++++++||++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~   89 (463)
T PLN02196         10 LFAGALFLCLLRFLAGFRRSSSTKLPLPPGTMGWPYVGETFQLYSQDPNVFFASKQKRYGSVFKTHVLGCPCVMISSPEA   89 (463)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccchHHHHHhcCHHHHHHHHHHHhhhhheeeecCCceEEEcCHHH
Confidence            3444444444444444444445556778899899999998765 678999999999999999999999999999999999


Q ss_pred             HHHHHHhCCcccCCCCchhhhhhhccCCCccccCCCChhHHHHHhHhhhhccchhhhccccCchHHHHHHHHHHHHhhcc
Q 043641           84 AKQVLQDHDTSLCNRNVPESIRSIQKDEYGIPWLPVSTKWKKLRKICNLHIFTSQKLDANQDLRPKKIQQLVAFVQDSCR  163 (478)
Q Consensus        84 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~  163 (478)
                      +++++.++...|... ....... .. +.+.++..+|+.|+++|++++ +.|+..+++.+.+.+++.++++++.|.    
T Consensus        90 ~~~vl~~~~~~~~~~-~~~~~~~-~~-g~~~l~~~~g~~w~~~Rk~l~-~~f~~~~l~~~~~~i~~~~~~~~~~~~----  161 (463)
T PLN02196         90 AKFVLVTKSHLFKPT-FPASKER-ML-GKQAIFFHQGDYHAKLRKLVL-RAFMPDAIRNMVPDIESIAQESLNSWE----  161 (463)
T ss_pred             HHHHHhCCCCccccc-CchHHHH-Hc-CcccccccCcHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHcCC----
Confidence            999998776666322 1111111 12 322345678999999999998 899999999999999999988888764    


Q ss_pred             CCCcccHHHHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHHHHHhccCCCCcccccccccCChhcHHHHHHHHHHH
Q 043641          164 TGEPSDVGQAAFDIVVNFLSNTIFSIDLADPNSDSAREFKDSMWGLMVEAKRPNLSDFFPMLRKLDIQGVQRRITRHTIK  243 (478)
Q Consensus       164 ~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~  243 (478)
                       ++.+|+.+++..+++++++.++||.+....    ...+.+....... .     ...+|+.  + +....++..++.++
T Consensus       162 -~~~v~~~~~~~~~~~~v~~~~~fG~~~~~~----~~~~~~~~~~~~~-~-----~~~~~~~--~-p~~~~~~~~~a~~~  227 (463)
T PLN02196        162 -GTQINTYQEMKTYTFNVALLSIFGKDEVLY----REDLKRCYYILEK-G-----YNSMPIN--L-PGTLFHKSMKARKE  227 (463)
T ss_pred             -CCeEEeHHHHHHHHHHHHHHHHcCCCCchH----HHHHHHHHHHHhc-c-----hhccccc--C-CCccchHHHHHHHH
Confidence             347899999999999999999999875321    1222222211110 0     1122321  1 11122455667778


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcccHHHHHhccccCCCCChhhHHHHHH----------------HHHHHhhChHHHHH
Q 043641          244 ILEVLDRFIDQRLEQRQQNSFADSKDMLDTLLNISESEDIDRNDIKFVIL----------------AVTELLNNPEALSK  307 (478)
Q Consensus       244 ~~~~~~~~i~~~~~~~~~~~~~~~~dl~~~ll~~~~~~~l~~~~i~~~~~----------------~l~~l~~~p~~~~~  307 (478)
                      +.+++.+.++++++.    . .+..|+++.+++..  ..++++++..++.                ++++|++||++|++
T Consensus       228 ~~~~~~~~i~~~~~~----~-~~~~d~l~~ll~~~--~~l~~~ei~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~vq~k  300 (463)
T PLN02196        228 LAQILAKILSKRRQN----G-SSHNDLLGSFMGDK--EGLTDEQIADNIIGVIFAARDTTASVLTWILKYLAENPSVLEA  300 (463)
T ss_pred             HHHHHHHHHHHHhhc----C-CCcccHHHHHHhcC--CCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHH
Confidence            888888888776543    1 22568999998642  3578887766554                89999999999999


Q ss_pred             HHHHHHHhhcC---CCCCCccccCCCccHHHHHHHHhccCCCCCccCccccCCCeeeecEEeCCCCEEEeehhhhccCCC
Q 043641          308 ARLELEQKVGK---GNLIEESDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEITGFIIPKGAQVLVNAWAIGRDTS  384 (478)
Q Consensus       308 l~~Ei~~~~~~---~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~  384 (478)
                      +++|++++.+.   +..++++++++||||+|||+|+||++|+++.. .|.+.+|+.++||.|||||.|+++.+++||||+
T Consensus       301 l~~Ei~~~~~~~~~~~~~~~~~~~~l~yl~avi~EtlRl~p~~~~~-~R~~~~d~~i~g~~IpkGt~v~~~~~~~~rd~~  379 (463)
T PLN02196        301 VTEEQMAIRKDKEEGESLTWEDTKKMPLTSRVIQETLRVASILSFT-FREAVEDVEYEGYLIPKGWKVLPLFRNIHHSAD  379 (463)
T ss_pred             HHHHHHHHhcccccCCCCCHHHHhcChHHHHHHHHHHhcCCCcccc-ceeeccccccCCEEeCCCCEEEeeHHHhcCCch
Confidence            99999998864   35688999999999999999999999999985 599999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcccCCCcCcCCCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCCCCCccccccc
Q 043641          385 TWDDPYSFKLERFLGSDVDVKGRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGNVDMEEKFGIT  464 (478)
Q Consensus       385 ~~~dp~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~  464 (478)
                      +|+||++|+||||++..     .+..|+|||.|+|.|+|++||++|+++++++|+++|++++.+++    .++  .+..+
T Consensus       380 ~~~dP~~F~PeRfl~~~-----~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~----~~~--~~~~~  448 (463)
T PLN02196        380 IFSDPGKFDPSRFEVAP-----KPNTFMPFGNGTHSCPGNELAKLEISVLIHHLTTKYRWSIVGTS----NGI--QYGPF  448 (463)
T ss_pred             hcCCcCccChhhhcCCC-----CCCcccCcCCCCCCCchHHHHHHHHHHHHHHHHHhcEEEEcCCC----Cce--EEccc
Confidence            99999999999999632     33579999999999999999999999999999999999987652    122  33334


Q ss_pred             cccCCCeeeeee
Q 043641          465 LQKAQPLHVVPI  476 (478)
Q Consensus       465 ~~~~~~~~~~~~  476 (478)
                      ..|+.++.|+..
T Consensus       449 ~~p~~~~~~~~~  460 (463)
T PLN02196        449 ALPQNGLPIALS  460 (463)
T ss_pred             ccCCCCceEEEe
Confidence            557788777654


No 24 
>PLN02738 carotene beta-ring hydroxylase
Probab=100.00  E-value=1.3e-67  Score=511.70  Aligned_cols=421  Identities=19%  Similarity=0.348  Sum_probs=315.9

Q ss_pred             ccCCCC-CCCCcHHHHHHHHhhCCcEEEeeCCeeEEEecCHHHHHHHHHhCCcccCCCCchhhhhhhccCCCccccCCCC
Q 043641           42 GNLLEL-GQKPHKSLADLAKVHGPIMSLQFGQVTTVVISSAAMAKQVLQDHDTSLCNRNVPESIRSIQKDEYGIPWLPVS  120 (478)
Q Consensus        42 G~~~~~-~~~~~~~~~~~~~~yG~v~~~~~~~~~~~vv~dp~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  120 (478)
                      ||+..+ ++.++..+.+++++||+||++++|++++++|+||+.+++|+..+...|.++.........  .+.++ +..+|
T Consensus       143 G~l~~i~~g~~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~~~~~~~~~--~g~~l-~~~dg  219 (633)
T PLN02738        143 GSISAVRGEAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEILEFV--MGKGL-IPADG  219 (633)
T ss_pred             CcHHHhcCchHHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcchHHHHhhc--cCCce-ecCCc
Confidence            444444 455778899999999999999999989999999999999999777667665433222222  24455 45679


Q ss_pred             hhHHHHHhHhhhhccchhhhccccCchHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHhccccCCCCcc--h
Q 043641          121 TKWKKLRKICNLHIFTSQKLDANQDLRPKKIQQLVAFVQDSCRTGEPSDVGQAAFDIVVNFLSNTIFSIDLADPNSD--S  198 (478)
Q Consensus       121 ~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~~~~~--~  198 (478)
                      +.|+.+|+.++ +.|+...+..+.+.+.+.++++++++.+...+++++|+...+..+++|+|+.++||.+++..+++  .
T Consensus       220 e~wr~rRr~l~-p~Fs~~~v~~l~~~i~~~v~~L~~~L~~~~~~g~~vdl~~~~~~lt~DVI~~~~FG~~~~~~~~~~~~  298 (633)
T PLN02738        220 EIWRVRRRAIV-PALHQKYVAAMISLFGQASDRLCQKLDAAASDGEDVEMESLFSRLTLDIIGKAVFNYDFDSLSNDTGI  298 (633)
T ss_pred             HHHHHHHHhcc-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHHHHHHHHHHHhCCCccccccchHH
Confidence            99999999998 99999999999999999999999999876566789999999999999999999999998754322  1


Q ss_pred             HHHHHHHHHHHHHhccCCCCcccccccccCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--------CCCCcccH
Q 043641          199 AREFKDSMWGLMVEAKRPNLSDFFPMLRKLDIQGVQRRITRHTIKILEVLDRFIDQRLEQRQQN--------SFADSKDM  270 (478)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~dl  270 (478)
                      ...+.+.+...............+|.+..+  ....++..+..+.+.+++.++++.+++..++.        ......|+
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l--~~~~~~~~~~~~~l~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~di  376 (633)
T PLN02738        299 VEAVYTVLREAEDRSVSPIPVWEIPIWKDI--SPRQRKVAEALKLINDTLDDLIAICKRMVEEEELQFHEEYMNERDPSI  376 (633)
T ss_pred             HHHHHHHHHHHHHHhhcchhhhhhhHHhhh--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhcccccccchH
Confidence            222333332222111111001112222222  11223444455556666666665543321100        01224589


Q ss_pred             HHHHhccccCCCCChhhHHHHHH----------------HHHHHhhChHHHHHHHHHHHHhhcCCCCCCccccCCCccHH
Q 043641          271 LDTLLNISESEDIDRNDIKFVIL----------------AVTELLNNPEALSKARLELEQKVGKGNLIEESDITQLPYLQ  334 (478)
Q Consensus       271 ~~~ll~~~~~~~l~~~~i~~~~~----------------~l~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~l~~lp~l~  334 (478)
                      ++.|++..+  .++++++.+++.                ++++|++||++|+||++|++.+++ +..++++++++||||+
T Consensus       377 l~~Ll~~~~--~ls~~~L~~e~~~ll~AG~eTTA~tLt~~l~~L~~~Pevq~kLreEl~~v~~-~~~~t~edL~kLPYL~  453 (633)
T PLN02738        377 LHFLLASGD--DVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPSVVAKLQEEVDSVLG-DRFPTIEDMKKLKYTT  453 (633)
T ss_pred             HHHHHHcCC--CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcC-CCCCCHHHHccCHHHH
Confidence            999987642  577777766554                899999999999999999999998 4678999999999999


Q ss_pred             HHHHHHhccCCCCCccCccccCCCeeeecEEeCCCCEEEeehhhhccCCCCCCCCCCCCCCcccCCCc--CcCCCcceee
Q 043641          335 IIVKETLRLHPPVPLLLPRKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSFKLERFLGSDV--DVKGRNFELF  412 (478)
Q Consensus       335 a~i~E~lRl~~~~~~~~~R~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~dp~~F~P~R~l~~~~--~~~~~~~~~~  412 (478)
                      |||+|+||+||+++. .+|.+.+|++++||.|||||.|+++.+.+||||++||||++|+||||+..+.  +.......|+
T Consensus       454 AVIkEtLRL~p~~p~-~~R~a~~d~~i~gy~IPkGT~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~v  532 (633)
T PLN02738        454 RVINESLRLYPQPPV-LIRRSLENDMLGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYL  532 (633)
T ss_pred             HHHHHHHhcCCCccc-cceeeccCceECCEEECCCCEEEecHHHHhCCccccCCccccCcccCCCCCCCccccCCCCcee
Confidence            999999999999998 4588999999999999999999999999999999999999999999985322  1223456899


Q ss_pred             ecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCCCCCccccccccccCCCeeeeee
Q 043641          413 PFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGNVDMEEKFGITLQKAQPLHVVPI  476 (478)
Q Consensus       413 pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (478)
                      |||.|+|.|+|++||++||+++++.|+++|+|++.++.+  +  +.....++..++.++.++++
T Consensus       533 pFG~G~R~CiG~~lA~~El~l~LA~Llr~F~~el~~~~~--~--~~~~~~~~~~p~~~l~v~l~  592 (633)
T PLN02738        533 PFGGGPRKCVGDMFASFENVVATAMLVRRFDFQLAPGAP--P--VKMTTGATIHTTEGLKMTVT  592 (633)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHHhCeeEeCCCCC--C--cccccceEEeeCCCcEEEEE
Confidence            999999999999999999999999999999999987632  1  22223455656656555554


No 25 
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=100.00  E-value=5.8e-67  Score=497.33  Aligned_cols=418  Identities=22%  Similarity=0.331  Sum_probs=319.9

Q ss_pred             cCCCCCCCCCCCCCCccccCCCC-----CCCCcHHHHHHHHhhCCcEEEeeCCeeEEEecCHHHHHHHHHhCCcccCCCC
Q 043641           25 SKGSRKLPPGPTPLPIIGNLLEL-----GQKPHKSLADLAKVHGPIMSLQFGQVTTVVISSAAMAKQVLQDHDTSLCNRN   99 (478)
Q Consensus        25 ~~~~~~~~pgP~~~p~~G~~~~~-----~~~~~~~~~~~~~~yG~v~~~~~~~~~~~vv~dp~~~~~i~~~~~~~~~~~~   99 (478)
                      ++++++.||||.++|++||++.+     ..+++.++.+++++||+||++++|+++++|++||+++++++.+++..|+.+.
T Consensus         2 ~~~~~~~Ppg~~~~P~iG~~~~l~~~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~~   81 (452)
T PLN03141          2 SKKKSRLPKGSLGWPVIGETLDFISCAYSSRPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPAY   81 (452)
T ss_pred             CCCCCCCCCCCCCCCchhhHHHHHhhcccCChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeeccC
Confidence            35677889999999999999876     3468899999999999999999999999999999999999998877776553


Q ss_pred             chhhhhhhccCCCccccCCCChhHHHHHhHhhhhccchhhhccc-cCchHHHHHHHHHHHHhhccCCCcccHHHHHHHHH
Q 043641          100 VPESIRSIQKDEYGIPWLPVSTKWKKLRKICNLHIFTSQKLDAN-QDLRPKKIQQLVAFVQDSCRTGEPSDVGQAAFDIV  178 (478)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~-~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~  178 (478)
                      .. ....+ .+..+ ++..+|+.|+++|+++. +.|+..++... .+.+.+.++++++.+.    .++.+|+...+..++
T Consensus        82 ~~-~~~~l-~g~~~-~~~~~g~~wr~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  153 (452)
T PLN03141         82 PK-SLTEL-MGKSS-ILLINGSLQRRVHGLIG-AFLKSPHLKAQITRDMERYVSESLDSWR----DDPPVLVQDETKKIA  153 (452)
T ss_pred             ch-hHHHH-hCccc-ccccCcHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHHHHHhcc----CCCCEEhHHHHHHHH
Confidence            22 22222 22233 45668999999999997 78877766542 3344444444444432    456899999999999


Q ss_pred             HHHHHHHHhccccCCCCcchHHHHHHHHHHHHHhccCCCCcccccccccCChhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043641          179 VNFLSNTIFSIDLADPNSDSAREFKDSMWGLMVEAKRPNLSDFFPMLRKLDIQGVQRRITRHTIKILEVLDRFIDQRLEQ  258 (478)
Q Consensus       179 ~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  258 (478)
                      ++++++++||.+.+.    ...++.+.+........      .+|..  + +....++..+..+++.+++..+++++++.
T Consensus       154 ~~vi~~~~~G~~~~~----~~~~~~~~~~~~~~~~~------~~~~~--~-p~~~~~~~~~~~~~l~~~~~~~i~~~~~~  220 (452)
T PLN03141        154 FEVLVKALISLEPGE----EMEFLKKEFQEFIKGLM------SLPIK--L-PGTRLYRSLQAKKRMVKLVKKIIEEKRRA  220 (452)
T ss_pred             HHHHHHHHcCCCchH----HHHHHHHHHHHHhhhHH------hCccC--C-CchHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999986532    12333333333322211      11211  1 11112344566788999999999888765


Q ss_pred             HhhCCC---CCcccHHHHHhccccCCCCChhhHHHHHH----------------HHHHHhhChHHHHHHHHHHHHhhc--
Q 043641          259 RQQNSF---ADSKDMLDTLLNISESEDIDRNDIKFVIL----------------AVTELLNNPEALSKARLELEQKVG--  317 (478)
Q Consensus       259 ~~~~~~---~~~~dl~~~ll~~~~~~~l~~~~i~~~~~----------------~l~~l~~~p~~~~~l~~Ei~~~~~--  317 (478)
                      .+.+..   ....|+++.++...+ ..++++++..++.                ++++|++||++|+++++|++++.+  
T Consensus       221 ~~~~~~~~~~~~~d~l~~ll~~~~-~~l~~~~i~~~~~~ll~Ag~dTts~tl~~~~~~L~~~P~v~~kl~~Ei~~~~~~~  299 (452)
T PLN03141        221 MKNKEEDETGIPKDVVDVLLRDGS-DELTDDLISDNMIDMMIPGEDSVPVLMTLAVKFLSDCPVALQQLTEENMKLKRLK  299 (452)
T ss_pred             HhccCccccCChhhHHHHHHhcCC-CCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHhcc
Confidence            421111   124689999998653 3578888776654                789999999999999999998763  


Q ss_pred             --CCCCCCccccCCCccHHHHHHHHhccCCCCCccCccccCCCeeeecEEeCCCCEEEeehhhhccCCCCCCCCCCCCCC
Q 043641          318 --KGNLIEESDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSFKLE  395 (478)
Q Consensus       318 --~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~dp~~F~P~  395 (478)
                        .+..++.+++.+||||+|||+|+||++|+++. ++|.+.+|++++||.||||+.|+++.+++|+|+++|+||++|+||
T Consensus       300 ~~~~~~~~~~~~~~lpyl~avi~E~lRl~p~~~~-~~R~~~~d~~l~g~~IPkG~~V~~~~~~~~~d~~~~~dP~~F~Pe  378 (452)
T PLN03141        300 ADTGEPLYWTDYMSLPFTQNVITETLRMGNIING-VMRKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPW  378 (452)
T ss_pred             CCCCCCCCHHHHhccHHHHHHHHHHHhccCCcCC-cceeecCCeeECCEEECCCCEEEEehHhccCCchhcCCccccCcc
Confidence              23457899999999999999999999999985 679999999999999999999999999999999999999999999


Q ss_pred             cccCCCcCcCCCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCCCCCccccccccccCCCeeeee
Q 043641          396 RFLGSDVDVKGRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGNVDMEEKFGITLQKAQPLHVVP  475 (478)
Q Consensus       396 R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (478)
                      ||++.+.    .+..|+|||+|+|.|+|++||.+|++++++.|+++|++++.++.   ..     ...+++|..++.+++
T Consensus       379 Rfl~~~~----~~~~~~pFG~G~R~C~G~~lA~~el~~~la~ll~~f~~~~~~~~---~~-----~~~~~~~~~~~~~~~  446 (452)
T PLN03141        379 RWQEKDM----NNSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTRFRWVAEEDT---IV-----NFPTVRMKRKLPIWV  446 (452)
T ss_pred             cccCCCC----CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCeeecCCCC---ee-----ecccccCCCCceEEE
Confidence            9997532    34579999999999999999999999999999999999987652   11     124777777777776


Q ss_pred             ec
Q 043641          476 IA  477 (478)
Q Consensus       476 ~~  477 (478)
                      .+
T Consensus       447 ~~  448 (452)
T PLN03141        447 TR  448 (452)
T ss_pred             Ee
Confidence            65


No 26 
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=100.00  E-value=2e-66  Score=492.14  Aligned_cols=440  Identities=20%  Similarity=0.261  Sum_probs=325.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCccccCCCCC-----CCCcHHHHHHHHhhCCcEEEeeCCeeEEE
Q 043641            3 ILISCVLWLLFTWVWVITLRSFSKGSRKLPPGPTPLPIIGNLLELG-----QKPHKSLADLAKVHGPIMSLQFGQVTTVV   77 (478)
Q Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgP~~~p~~G~~~~~~-----~~~~~~~~~~~~~yG~v~~~~~~~~~~~v   77 (478)
                      ..+.+.+...+.+++.++..+.+..+.+.||||.++|++||+..+.     .+++.++.+++++||++|+++++++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~l~~~~~vv   82 (472)
T PLN02987          3 FSAFLLLLSSLAAIFFLLLRRTRYRRMRLPPGSLGLPLVGETLQLISAYKTENPEPFIDERVARYGSLFMTHLFGEPTVF   82 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCCcCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhchhhhhhhcCCCeEE
Confidence            3333444444444444455555566667899999999999998762     46888999999999999999999999999


Q ss_pred             ecCHHHHHHHHHhCCcccCCCCchhhhhhhccCCCccccCCCChhHHHHHhHhhhhccchhhhccccC-chHHHHHHHHH
Q 043641           78 ISSAAMAKQVLQDHDTSLCNRNVPESIRSIQKDEYGIPWLPVSTKWKKLRKICNLHIFTSQKLDANQD-LRPKKIQQLVA  156 (478)
Q Consensus        78 v~dp~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~-~~~~~~~~~~~  156 (478)
                      |+||+++++++.++...|..+........+  ++.|+. ..+|+.|+++|+++. +.++...++.+.. .+.+.++..++
T Consensus        83 v~~pe~~~~il~~~~~~f~~~~~~~~~~~l--g~~~l~-~~~g~~wr~~R~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~  158 (472)
T PLN02987         83 SADPETNRFILQNEGKLFECSYPGSISNLL--GKHSLL-LMKGNLHKKMHSLTM-SFANSSIIKDHLLLDIDRLIRFNLD  158 (472)
T ss_pred             EeCHHHHHHHHhCCCceEEecCcHHHHHHh--Cccccc-ccCcHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999887777655433333333  234554 457999999999986 5444444433221 12222222233


Q ss_pred             HHHhhccCCCcccHHHHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHHHHHhccCCCCcccccccccCChhcHHHH
Q 043641          157 FVQDSCRTGEPSDVGQAAFDIVVNFLSNTIFSIDLADPNSDSAREFKDSMWGLMVEAKRPNLSDFFPMLRKLDIQGVQRR  236 (478)
Q Consensus       157 ~l~~~~~~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~  236 (478)
                      .|      .+++++.+.+..++++++++++||.+.+...    +.+.+.+.......    +...+|++.     ...++
T Consensus       159 ~~------~~~v~~~~~~~~~t~~vi~~~~fg~~~~~~~----~~~~~~~~~~~~~~----~~~~~p~l~-----~~~~~  219 (472)
T PLN02987        159 SW------SSRVLLMEEAKKITFELTVKQLMSFDPGEWT----ESLRKEYVLVIEGF----FSVPLPLFS-----TTYRR  219 (472)
T ss_pred             hh------ccceehHHHHHHHHHHHHHHHHcCCCChHHH----HHHHHHHHHHHhhh----hcCCCcCCC-----chHHH
Confidence            32      1368999999999999999999998654221    22222222221111    112345431     22466


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccHHHHHhccccCCCCChhhHHHHHH----------------HHHHHhh
Q 043641          237 ITRHTIKILEVLDRFIDQRLEQRQQNSFADSKDMLDTLLNISESEDIDRNDIKFVIL----------------AVTELLN  300 (478)
Q Consensus       237 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dl~~~ll~~~~~~~l~~~~i~~~~~----------------~l~~l~~  300 (478)
                      ..+..+++.+++.++++++++..+ .+.....|+++.+++..+  .++++++..+++                ++++|++
T Consensus       220 ~~~~~~~~~~~~~~~i~~r~~~~~-~~~~~~~d~l~~ll~~~~--~~~~~ei~~~~~~l~~Ag~~tta~~l~~~l~~L~~  296 (472)
T PLN02987        220 AIQARTKVAEALTLVVMKRRKEEE-EGAEKKKDMLAALLASDD--GFSDEEIVDFLVALLVAGYETTSTIMTLAVKFLTE  296 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhh-ccCcccccHHHHHHhcCC--CCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence            777888999999999999876542 111235799999998643  688888877654                7999999


Q ss_pred             ChHHHHHHHHHHHHhhc---CCCCCCccccCCCccHHHHHHHHhccCCCCCccCccccCCCeeeecEEeCCCCEEEeehh
Q 043641          301 NPEALSKARLELEQKVG---KGNLIEESDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEITGFIIPKGAQVLVNAW  377 (478)
Q Consensus       301 ~p~~~~~l~~Ei~~~~~---~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i~g~~ip~g~~v~~~~~  377 (478)
                      ||++|+++++|++.+.+   ++..++++++.+|||++||++|+||++|+++. .+|.+.+|++++||.||||+.|+++.+
T Consensus       297 ~P~~~~~l~~E~~~~~~~~~~~~~~~~~~l~~lpyl~a~i~EtLRl~p~~~~-~~R~~~~d~~~~G~~ip~Gt~v~~~~~  375 (472)
T PLN02987        297 TPLALAQLKEEHEKIRAMKSDSYSLEWSDYKSMPFTQCVVNETLRVANIIGG-IFRRAMTDIEVKGYTIPKGWKVFASFR  375 (472)
T ss_pred             ChHHHHHHHHHHHHHHcccCCCCCCCHHHHhcChHHHHHHHHHHHccCCcCC-ccccCCCCeeECCEEECCCCEEEEehH
Confidence            99999999999999875   23557889999999999999999999999986 669999999999999999999999999


Q ss_pred             hhccCCCCCCCCCCCCCCcccCCCcCcCCCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCCCCC
Q 043641          378 AIGRDTSTWDDPYSFKLERFLGSDVDVKGRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGNVDM  457 (478)
Q Consensus       378 ~~~~d~~~~~dp~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~~~~  457 (478)
                      .+|+||++|+||++|+||||++.+... .....++|||+|+|.|+|++||.+|++++++.|+++|++++.++.     +.
T Consensus       376 ~~~~d~~~~~~p~~F~PeRfl~~~~~~-~~~~~~l~FG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~-----~~  449 (472)
T PLN02987        376 AVHLDHEYFKDARTFNPWRWQSNSGTT-VPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTRFSWVPAEQD-----KL  449 (472)
T ss_pred             HhhCCcccCCCccccCcccCCCCCCCC-CCCcceECCCCCCcCCCcHHHHHHHHHHHHHHHHhceEEEECCCC-----ce
Confidence            999999999999999999999754321 233579999999999999999999999999999999999987652     12


Q ss_pred             ccccccccccCCCeeeeeec
Q 043641          458 EEKFGITLQKAQPLHVVPIA  477 (478)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~  477 (478)
                      ..  ..++.|..++.+++++
T Consensus       450 ~~--~~~~~p~~~~~~~~~~  467 (472)
T PLN02987        450 VF--FPTTRTQKRYPINVKR  467 (472)
T ss_pred             ee--cccccCCCCceEEEEe
Confidence            22  2377776666666553


No 27 
>PLN02302 ent-kaurenoic acid oxidase
Probab=100.00  E-value=3.5e-66  Score=499.67  Aligned_cols=419  Identities=21%  Similarity=0.289  Sum_probs=320.8

Q ss_pred             cCCCCCCCCCCCCCCccccCCCC-----CCCCcHHHHHHHHhhCC--cEEEeeCCeeEEEecCHHHHHHHHHhCCcccCC
Q 043641           25 SKGSRKLPPGPTPLPIIGNLLEL-----GQKPHKSLADLAKVHGP--IMSLQFGQVTTVVISSAAMAKQVLQDHDTSLCN   97 (478)
Q Consensus        25 ~~~~~~~~pgP~~~p~~G~~~~~-----~~~~~~~~~~~~~~yG~--v~~~~~~~~~~~vv~dp~~~~~i~~~~~~~~~~   97 (478)
                      .....+.||||+++|++|+++.+     ..++++++.+++++||+  +|++++++.+.++++||+++++|+.++ ..|.+
T Consensus        37 ~~~~~~lpPgp~~~PilG~l~~~~~~~~~~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~-~~f~~  115 (490)
T PLN02302         37 GEGQPPLPPGDLGWPVIGNMWSFLRAFKSSNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDD-DAFEP  115 (490)
T ss_pred             ccCCCCCcCCCCCCCccccHHHHHHhcccCCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCC-Ccccc
Confidence            45556789999999999998765     35789999999999997  799999999999999999999999865 44544


Q ss_pred             CCchhhhhhhccCCCccccCCCChhHHHHHhHhhhhcc-chhhhccccCchHHHHHHHHHHHHhhccCCCcccHHHHHHH
Q 043641           98 RNVPESIRSIQKDEYGIPWLPVSTKWKKLRKICNLHIF-TSQKLDANQDLRPKKIQQLVAFVQDSCRTGEPSDVGQAAFD  176 (478)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f-~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~  176 (478)
                      +........+   +.+.+...+|+.|+++|+.+. +.| +.++++.+.+.+.+.++++++.+..    ++.+|+.+++..
T Consensus       116 ~~~~~~~~~~---g~~~~~~~~g~~w~~~R~~~~-~~f~~~~~l~~~~~~i~~~v~~~~~~~~~----~~~v~~~~~~~~  187 (490)
T PLN02302        116 GWPESTVELI---GRKSFVGITGEEHKRLRRLTA-APVNGPEALSTYIPYIEENVKSCLEKWSK----MGEIEFLTELRK  187 (490)
T ss_pred             CCchhHHHHh---ccccccccCcHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHhcC----CCCEehHHHHHH
Confidence            4332222222   223345567999999999998 777 4678888999999999999988853    346999999999


Q ss_pred             HHHHHHHHHHhccccCCCCcchHHHHHHHHHHHHHhccCCCCcccccccccCChhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 043641          177 IVVNFLSNTIFSIDLADPNSDSAREFKDSMWGLMVEAKRPNLSDFFPMLRKLDIQGVQRRITRHTIKILEVLDRFIDQRL  256 (478)
Q Consensus       177 ~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  256 (478)
                      +++++++.++||.+.+..    ...+.+.+.........  +...+|..       ..++..+..+++.+++.+.+++++
T Consensus       188 ~~~~vi~~~~~G~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~p~~-------~~~~~~~~~~~l~~~~~~~i~~~~  254 (490)
T PLN02302        188 LTFKIIMYIFLSSESELV----MEALEREYTTLNYGVRA--MAINLPGF-------AYHRALKARKKLVALFQSIVDERR  254 (490)
T ss_pred             HHHHHHHHHHcCCCChHH----HHHHHHHHHHHHHHhhh--CCcCCCch-------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999875432    12222222211111100  01112211       123444566778888889988887


Q ss_pred             HHHhhCCCCCcccHHHHHhccccCC--CCChhhHHHHHH----------------HHHHHhhChHHHHHHHHHHHHhhcC
Q 043641          257 EQRQQNSFADSKDMLDTLLNISESE--DIDRNDIKFVIL----------------AVTELLNNPEALSKARLELEQKVGK  318 (478)
Q Consensus       257 ~~~~~~~~~~~~dl~~~ll~~~~~~--~l~~~~i~~~~~----------------~l~~l~~~p~~~~~l~~Ei~~~~~~  318 (478)
                      +..+.+......|+++.+++..+++  .++++++..++.                ++++|++||++|+|+++|++.+.++
T Consensus       255 ~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~i~~~~~~~~~Ag~dtta~~l~~~l~~L~~~P~~~~kl~~E~~~v~~~  334 (490)
T PLN02302        255 NSRKQNISPRKKDMLDLLLDAEDENGRKLDDEEIIDLLLMYLNAGHESSGHLTMWATIFLQEHPEVLQKAKAEQEEIAKK  334 (490)
T ss_pred             HhhhccCCCCcCCHHHHHHhhhccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhc
Confidence            6543222233579999999865432  588888776554                7999999999999999999999864


Q ss_pred             C----CCCCccccCCCccHHHHHHHHhccCCCCCccCccccCCCeeeecEEeCCCCEEEeehhhhccCCCCCCCCCCCCC
Q 043641          319 G----NLIEESDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSFKL  394 (478)
Q Consensus       319 ~----~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~dp~~F~P  394 (478)
                      .    ..++++++++||||+|||+|+||++|+++. .+|.+.+|++++||.||||+.|.++.+++||||++|+||++|+|
T Consensus       335 ~~~~~~~~~~~~l~~lpyl~a~i~E~lRl~p~~~~-~~R~~~~d~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~P  413 (490)
T PLN02302        335 RPPGQKGLTLKDVRKMEYLSQVIDETLRLINISLT-VFREAKTDVEVNGYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDP  413 (490)
T ss_pred             CCCCCCCCCHHHHhcChHHHHHHHHHHHhCCCccc-chhcccCCEeECCEEECCCCEEEeeHHHhcCCcccCCCccccCh
Confidence            2    137899999999999999999999999998 56999999999999999999999999999999999999999999


Q ss_pred             CcccCCCcCcCCCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCCCCCccccccccccCCCeeee
Q 043641          395 ERFLGSDVDVKGRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGNVDMEEKFGITLQKAQPLHVV  474 (478)
Q Consensus       395 ~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (478)
                      |||++..    ..+..|+|||+|+|.|+|++||.+|+++++++|+++|++++.++..    ++.  ......|..++.++
T Consensus       414 eR~~~~~----~~~~~~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~----~~~--~~~~~~p~~~~~~~  483 (490)
T PLN02302        414 SRWDNYT----PKAGTFLPFGLGSRLCPGNDLAKLEISIFLHHFLLGYRLERLNPGC----KVM--YLPHPRPKDNCLAR  483 (490)
T ss_pred             hhcCCCC----CCCCCccCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCeeEEcCCCC----cce--eCCCCCCCCCceEE
Confidence            9999643    2345799999999999999999999999999999999999876521    122  22235566665555


Q ss_pred             ee
Q 043641          475 PI  476 (478)
Q Consensus       475 ~~  476 (478)
                      .+
T Consensus       484 ~~  485 (490)
T PLN02302        484 IT  485 (490)
T ss_pred             EE
Confidence            54


No 28 
>PLN02936 epsilon-ring hydroxylase
Probab=100.00  E-value=1.7e-65  Score=490.72  Aligned_cols=432  Identities=22%  Similarity=0.335  Sum_probs=332.0

Q ss_pred             CCCCCCCCCCCccccCCCC-----CCCCcHHHHHHHHhhCCcEEEeeCCeeEEEecCHHHHHHHHHhCCcccCCCCchhh
Q 043641           29 RKLPPGPTPLPIIGNLLEL-----GQKPHKSLADLAKVHGPIMSLQFGQVTTVVISSAAMAKQVLQDHDTSLCNRNVPES  103 (478)
Q Consensus        29 ~~~~pgP~~~p~~G~~~~~-----~~~~~~~~~~~~~~yG~v~~~~~~~~~~~vv~dp~~~~~i~~~~~~~~~~~~~~~~  103 (478)
                      ++.-.|-.|+|.+|+.+.+     ++.++..+.+|+++||++|++++|+++.++++||+++++|+.+.+..|.++.....
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~   90 (489)
T PLN02936         11 NRLWGDDSGIPVADAKLEDVTDLLGGALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLVAEV   90 (489)
T ss_pred             hccCCCCCCCccHHhHHhhHHHHhccHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcchhhh
Confidence            3455688899999998876     56789999999999999999999999999999999999999876667776654332


Q ss_pred             hhhhccCCCccccCCCChhHHHHHhHhhhhccchhhhccccC-chHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHH
Q 043641          104 IRSIQKDEYGIPWLPVSTKWKKLRKICNLHIFTSQKLDANQD-LRPKKIQQLVAFVQDSCRTGEPSDVGQAAFDIVVNFL  182 (478)
Q Consensus       104 ~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~~vi  182 (478)
                      .... . +.++ +..+|+.|+++|+.++ +.|+..++..+.+ .+.+.++++++.+.+...+++++|+.++++.++++++
T Consensus        91 ~~~~-~-~~~i-~~~~g~~wk~~Rk~l~-~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vd~~~~~~~~~~dvi  166 (489)
T PLN02936         91 SEFL-F-GSGF-AIAEGELWTARRRAVV-PSLHRRYLSVMVDRVFCKCAERLVEKLEPVALSGEAVNMEAKFSQLTLDVI  166 (489)
T ss_pred             hHHH-h-cCcc-ccCCchHHHHHHHhhc-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHH
Confidence            2222 1 3454 5577999999999998 8999888877644 6788899999999876556678999999999999999


Q ss_pred             HHHHhccccCCCCcchHHHHHHHHHHHHHhccCCCCcccccccc-----cCChhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043641          183 SNTIFSIDLADPNSDSAREFKDSMWGLMVEAKRPNLSDFFPMLR-----KLDIQGVQRRITRHTIKILEVLDRFIDQRLE  257 (478)
Q Consensus       183 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  257 (478)
                      +.++||.+++..+.+  .++.+.+...+..... .....+|++.     .+  ....++..+..+.+.+++.+.++++++
T Consensus       167 ~~~~fG~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~l~~~--~p~~~~~~~~~~~i~~~~~~~i~~~~~  241 (489)
T PLN02936        167 GLSVFNYNFDSLTTD--SPVIQAVYTALKEAET-RSTDLLPYWKVDFLCKI--SPRQIKAEKAVTVIRETVEDLVDKCKE  241 (489)
T ss_pred             HHHHcCCCccccccC--cHHHHHHHHHHHHHHH-hhhccchHHhhHHHhcc--ChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998865332  2233333332221111 1112334321     11  112345666777888888888887665


Q ss_pred             HHhhCC---------CCCcccHHHHHhccccCCCCChhhHHHHHH----------------HHHHHhhChHHHHHHHHHH
Q 043641          258 QRQQNS---------FADSKDMLDTLLNISESEDIDRNDIKFVIL----------------AVTELLNNPEALSKARLEL  312 (478)
Q Consensus       258 ~~~~~~---------~~~~~dl~~~ll~~~~~~~l~~~~i~~~~~----------------~l~~l~~~p~~~~~l~~Ei  312 (478)
                      ..++..         .....|+++.|++..+  .++++++..++.                ++|+|++||++|+++++|+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~--~~~~~~i~~~~~~~~~aG~dTta~~l~~~l~~L~~~p~~~~kl~~Ei  319 (489)
T PLN02936        242 IVEAEGEVIEGEEYVNDSDPSVLRFLLASRE--EVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKNPEALRKAQEEL  319 (489)
T ss_pred             HHhhcccccccccccccCchHHHHHHHhccc--cCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            432111         1124689999987643  578887775544                8999999999999999999


Q ss_pred             HHhhcCCCCCCccccCCCccHHHHHHHHhccCCCCCccCccccCCCeeeecEEeCCCCEEEeehhhhccCCCCCCCCCCC
Q 043641          313 EQKVGKGNLIEESDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSF  392 (478)
Q Consensus       313 ~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~dp~~F  392 (478)
                      +++++. ..++++++++||||+|||+||||++|+++...+|.+.+|+.++||.||||+.|+++.+++||||++||||++|
T Consensus       320 ~~~~~~-~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~r~~~~~~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F  398 (489)
T PLN02936        320 DRVLQG-RPPTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVWERAEEF  398 (489)
T ss_pred             HHHhcC-CCCCHHHHhhCHHHHHHHHHhhhcCCCcccccceeccCccccCCeEECCCCEEEecHHhccCChhhCCCcccc
Confidence            999884 4578999999999999999999999999988877777888889999999999999999999999999999999


Q ss_pred             CCCcccCCCcC--cCCCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCCCCCccccccccccCCC
Q 043641          393 KLERFLGSDVD--VKGRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGNVDMEEKFGITLQKAQP  470 (478)
Q Consensus       393 ~P~R~l~~~~~--~~~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (478)
                      +||||+.++..  ....+..|+|||.|+|.|+|++||++|+++++++|+++|++++.++.   +.  ....+++..++.+
T Consensus       399 ~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~C~G~~la~~~~~~~la~ll~~f~~~~~~~~---~~--~~~~~~~~~~~~~  473 (489)
T PLN02936        399 VPERFDLDGPVPNETNTDFRYIPFSGGPRKCVGDQFALLEAIVALAVLLQRLDLELVPDQ---DI--VMTTGATIHTTNG  473 (489)
T ss_pred             CccccCCCCCCccccCCCcceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCeEEecCCC---cc--ceecceEEeeCCC
Confidence            99999975421  12234579999999999999999999999999999999999988652   22  2223455666666


Q ss_pred             eeeeeec
Q 043641          471 LHVVPIA  477 (478)
Q Consensus       471 ~~~~~~~  477 (478)
                      +.|+.++
T Consensus       474 ~~v~~~~  480 (489)
T PLN02936        474 LYMTVSR  480 (489)
T ss_pred             eEEEEEe
Confidence            6666543


No 29 
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=1.2e-65  Score=446.32  Aligned_cols=424  Identities=21%  Similarity=0.316  Sum_probs=333.9

Q ss_pred             CCCCCCC-CCCccccCCCCCCCCcHHHHHHHHhhCCcEEEeeCCeeEEEecCHHHHHHHHHhCCcccCCCCchhhhhhhc
Q 043641           30 KLPPGPT-PLPIIGNLLELGQKPHKSLADLAKVHGPIMSLQFGQVTTVVISSAAMAKQVLQDHDTSLCNRNVPESIRSIQ  108 (478)
Q Consensus        30 ~~~pgP~-~~p~~G~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~~vv~dp~~~~~i~~~~~~~~~~~~~~~~~~~~~  108 (478)
                      +.||.-. ++||+|++..|+++|.++++++++|||+||++.++|+.+.++.+|+....++..+...++....+.....-.
T Consensus        31 ~~PPli~gwiP~lG~a~~fgk~P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld~~~~~~~l~~~v  110 (486)
T KOG0684|consen   31 KEPPLIKGWIPWLGSALAFGKDPLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADLDFEEAYSKLTTPV  110 (486)
T ss_pred             CCCcccccCcchhhHHHHhccCHHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCcccccCHHHHHHHhhhhh
Confidence            4566555 589999999999999999999999999999999999999999999999999987644444333332222222


Q ss_pred             cCCCccccCCCChhHHHHHhHhhhhccchhhhccccCchHHHHHHHHHH-HHhhccCCCcccHHHHHHHHHHHHHHHHHh
Q 043641          109 KDEYGIPWLPVSTKWKKLRKICNLHIFTSQKLDANQDLRPKKIQQLVAF-VQDSCRTGEPSDVGQAAFDIVVNFLSNTIF  187 (478)
Q Consensus       109 ~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~-l~~~~~~~~~vd~~~~~~~~~~~vi~~~~f  187 (478)
                      + |+|++....+....++.+++. ..+....++.+.+.|.++.++.++. +.   +++..-.+...+..+++.+.-.++|
T Consensus       111 F-g~~v~~d~~~~~~~e~~~~~k-~~L~~~~lk~~~e~m~~el~~~f~~~~~---~s~~~d~l~~~~~~ii~tAs~~ll~  185 (486)
T KOG0684|consen  111 F-GKGVVYDVPNHVMMEQKKFFK-SALGGVALKSLVELMLEELHAYFETSLG---ESGETDGLYTFCRLIIFTASRLLLG  185 (486)
T ss_pred             c-CCCccccCCCchHHHHHHHHH-HHhchhhHHHHHHHHHHHHHHHHhcccc---cccchhHhhhhhHHHhhhhHHHhhh
Confidence            3 567777777778888888887 8899999999999999998888877 33   2556666778888888888888888


Q ss_pred             ccccCCCCcchHHHHHHHHHHHHHhccCCCCcccccccccCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Q 043641          188 SIDLADPNSDSAREFKDSMWGLMVEAKRPNLSDFFPMLRKLDIQGVQRRITRHTIKILEVLDRFIDQRLEQRQQNSFADS  267 (478)
Q Consensus       188 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  267 (478)
                      |+.....+.. ...+...+...+.     .+...||.  +++.. ..++..++.+++.+.+...+.++++.    .....
T Consensus       186 ~e~r~~~d~~-~a~l~~dLd~~F~-----~~d~~FP~--~LP~~-~~r~~~ra~~~i~k~f~~~i~~rr~s----~s~~~  252 (486)
T KOG0684|consen  186 GEVRDQLDAD-VAKLYHDLDQGFQ-----PFDFLFPY--NLPIP-LLRRRDRARKKISKIFSKIILDRRAS----ISKWD  252 (486)
T ss_pred             hhhhhhhcch-HHHHHHHHhcccc-----chHhhccc--CCCcc-hhhhHHHHHHHHHHHHHHHHHHHHhc----ccccc
Confidence            8877665432 2333443433222     22334663  22222 33455588888999999999888874    33446


Q ss_pred             ccHHHHHhccccCC-CCChhhHHHHHH----------------HHHHHhhChHHHHHHHHHHHHhhcCCCC-CCccccCC
Q 043641          268 KDMLDTLLNISESE-DIDRNDIKFVIL----------------AVTELLNNPEALSKARLELEQKVGKGNL-IEESDITQ  329 (478)
Q Consensus       268 ~dl~~~ll~~~~~~-~l~~~~i~~~~~----------------~l~~l~~~p~~~~~l~~Ei~~~~~~~~~-~~~~~l~~  329 (478)
                      +|+++.+++...+. ..+++|+....+                ++++|++|||+++.+++|+++++|.+.. ++++.+++
T Consensus       253 ~dmlq~l~~~y~dg~~~te~e~a~~li~~LwA~Q~ns~ptsfW~l~yLl~~Pe~~~a~~eE~k~vlG~~~~~l~~d~L~~  332 (486)
T KOG0684|consen  253 NDMLQSLMEKYKDGRPTTEEEIAGLLIGLLWAGQHNSSPTSFWTLAYLLRHPEAQKAVREEQKRVLGEKKEKLTYDQLKD  332 (486)
T ss_pred             HHHHHHHHHHhhcCCcCcHHHHHHHHHHHHHhccccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhhccCCCCCHHHHhc
Confidence            78999999843333 678887765433                8999999999999999999999988554 89999999


Q ss_pred             CccHHHHHHHHhccCCCCCccCccccCCCeeeec----EEeCCCCEEEeehhhhccCCCCCCCCCCCCCCcccCCCcCcC
Q 043641          330 LPYLQIIVKETLRLHPPVPLLLPRKASADVEITG----FIIPKGAQVLVNAWAIGRDTSTWDDPYSFKLERFLGSDVDVK  405 (478)
Q Consensus       330 lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i~g----~~ip~g~~v~~~~~~~~~d~~~~~dp~~F~P~R~l~~~~~~~  405 (478)
                      ||+|++||+|||||+||.+..+ |.+.+|.++.+    |.||+|..|.+++..+|+||++||||++|+|+||++++++.+
T Consensus       333 lplL~~~IkEtLRL~~p~~~~~-R~v~~D~tv~~~~~~Y~Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~  411 (486)
T KOG0684|consen  333 LPLLDSCIKETLRLHPPAHSLM-RKVHEDLTVPGSDGEYVIPKGDIVALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESK  411 (486)
T ss_pred             chHHHHHHHHHHhcCCchhhHH-HhhccceeeccCCcceecCCCCEEEeccccccCCccccCChhhCChhhccCCCcccc
Confidence            9999999999999999888755 99999999976    999999999999999999999999999999999998876542


Q ss_pred             ----CCcceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCCCCCccccccccccCCCeeeeee
Q 043641          406 ----GRNFELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGNVDMEEKFGITLQKAQPLHVVPI  476 (478)
Q Consensus       406 ----~~~~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (478)
                          .-.+.|||||+|.|.|||++||.+|+|.++..+|++||+++.+++   ..+++.. .+++.|..+++|+=+
T Consensus       412 k~g~kl~yy~mpfGaGr~~CpGr~FA~~eIk~~~~l~L~~fdleLid~~---~P~~d~s-~~v~~P~g~v~irYK  482 (486)
T KOG0684|consen  412 KNGEKLDYYYMPFGAGRHRCPGRSFAYLEIKQFISLLLRHFDLELIDGP---FPEVDYS-RMVMQPEGDVRIRYK  482 (486)
T ss_pred             cccccccccccccCCCcCCCCchHHHHHHHHHHHHHHHHHcceeecCCC---CCCCCHH-HhhcCCCCCceEEEe
Confidence                123457999999999999999999999999999999999999971   2234443 348889999888754


No 30 
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=100.00  E-value=3.8e-63  Score=473.38  Aligned_cols=421  Identities=19%  Similarity=0.241  Sum_probs=313.3

Q ss_pred             CCccccCCCCCCCCcHHHHHHHHhhC-CcEEEeeCCeeEEEecCHHHHHHHHHhCCcccCCCCchh-hhhhhccCCCccc
Q 043641           38 LPIIGNLLELGQKPHKSLADLAKVHG-PIMSLQFGQVTTVVISSAAMAKQVLQDHDTSLCNRNVPE-SIRSIQKDEYGIP  115 (478)
Q Consensus        38 ~p~~G~~~~~~~~~~~~~~~~~~~yG-~v~~~~~~~~~~~vv~dp~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  115 (478)
                      .++.|++...-.+.+.++..+.++|+ .+++++..+.  ++++||+.+++|+..+...|.+..... .....  .|.|+ 
T Consensus        49 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~~~~~~~~~~--~g~gi-  123 (502)
T PLN02426         49 AYLTASWAKDFDNLCDWYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGKPFSAILGDL--LGRGI-  123 (502)
T ss_pred             CCccHHHHHhcccHHHHHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcHhHHHHHHHh--cCCce-
Confidence            56788886644456777777888887 5788876663  899999999999987766676544332 22222  25565 


Q ss_pred             cCCCChhHHHHHhHhhhhccchhhhcccc--CchHHHHHHHHHHHHhhcc--CCCcccHHHHHHHHHHHHHHHHHhcccc
Q 043641          116 WLPVSTKWKKLRKICNLHIFTSQKLDANQ--DLRPKKIQQLVAFVQDSCR--TGEPSDVGQAAFDIVVNFLSNTIFSIDL  191 (478)
Q Consensus       116 ~~~~g~~w~~~R~~~~~~~f~~~~l~~~~--~~~~~~~~~~~~~l~~~~~--~~~~vd~~~~~~~~~~~vi~~~~fG~~~  191 (478)
                      ++.+|+.|+++||.++ +.|+..+++.+.  ..+++.++++++.+.+..+  +++++|+.++++.+++|+|+.++||.++
T Consensus       124 ~~~~g~~wk~~Rk~l~-~~fs~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~  202 (502)
T PLN02426        124 FNVDGDSWRFQRKMAS-LELGSVSIRSYAFEIVASEIESRLLPLLSSAADDGEGAVLDLQDVFRRFSFDNICKFSFGLDP  202 (502)
T ss_pred             eecCcHHHHHHHHHhH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEcHHHHHHHHHHHHHHHHHhCCCC
Confidence            6678999999999998 999999888763  5677778888888865432  2467999999999999999999999998


Q ss_pred             CCCCcc-hHHHHHHHHHHHHHhccCCCCcccccccc---cCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Q 043641          192 ADPNSD-SAREFKDSMWGLMVEAKRPNLSDFFPMLR---KLDIQGVQRRITRHTIKILEVLDRFIDQRLEQRQQNSFADS  267 (478)
Q Consensus       192 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~P~l~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  267 (478)
                      +..+.+ ...++.+.+..+....... ....+|++.   .+...+..++..+..+.+.+++.+.|+++++..    ....
T Consensus       203 ~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~r~~~~----~~~~  277 (502)
T PLN02426        203 GCLELSLPISEFADAFDTASKLSAER-AMAASPLLWKIKRLLNIGSERKLKEAIKLVDELAAEVIRQRRKLG----FSAS  277 (502)
T ss_pred             cccCCCCCccHHHHHHHHHHHHHHHH-HhcchhHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhcc----cCCc
Confidence            765421 1233444444332211100 011123221   110112345667778888899999998877632    1225


Q ss_pred             ccHHHHHhccccCCCCChhhHHHHH----------------HHHHHHhhChHHHHHHHHHHHHhhcCC-CCCCccccCCC
Q 043641          268 KDMLDTLLNISESEDIDRNDIKFVI----------------LAVTELLNNPEALSKARLELEQKVGKG-NLIEESDITQL  330 (478)
Q Consensus       268 ~dl~~~ll~~~~~~~l~~~~i~~~~----------------~~l~~l~~~p~~~~~l~~Ei~~~~~~~-~~~~~~~l~~l  330 (478)
                      .|+++.+++...    +++++..++                +++|+|++||++|+|+++|++.+.+.+ ..++++++++|
T Consensus       278 ~dll~~ll~~~~----~~~~l~~~~~~~l~AG~dTta~~l~~~l~~L~~~P~v~~kl~~Ei~~~~~~~~~~~t~~~l~~L  353 (502)
T PLN02426        278 KDLLSRFMASIN----DDKYLRDIVVSFLLAGRDTVASALTSFFWLLSKHPEVASAIREEADRVMGPNQEAASFEEMKEM  353 (502)
T ss_pred             chHHHHHHhcCC----CHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCCCCHHHHhcC
Confidence            799999998643    344443332                389999999999999999999998753 36899999999


Q ss_pred             ccHHHHHHHHhccCCCCCccCccccCCCeee-ecEEeCCCCEEEeehhhhccCCCCC-CCCCCCCCCcccCCCcCcCCCc
Q 043641          331 PYLQIIVKETLRLHPPVPLLLPRKASADVEI-TGFIIPKGAQVLVNAWAIGRDTSTW-DDPYSFKLERFLGSDVDVKGRN  408 (478)
Q Consensus       331 p~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i-~g~~ip~g~~v~~~~~~~~~d~~~~-~dp~~F~P~R~l~~~~~~~~~~  408 (478)
                      |||+|||+|+||++|+++.. .|.+.+|.++ +|+.|||||.|.++.+++||||++| |||++|+||||++++......+
T Consensus       354 pYl~avi~EtLRl~p~v~~~-~r~~~~d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~~~~~~~  432 (502)
T PLN02426        354 HYLHAALYESMRLFPPVQFD-SKFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVFVPENP  432 (502)
T ss_pred             hHHHHHHHHHHhCCCCCCCc-ceeeccCCCcCCCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCCCcCCCCC
Confidence            99999999999999999985 5999988887 8999999999999999999999999 9999999999997432112234


Q ss_pred             ceeeecCCCCCCCCChHHHHHHHHHHHHHHHhhcceeecCCCCCCCCCCccccccccccCCCeeeeeec
Q 043641          409 FELFPFGAGRRICLGLPLAIRMLYLMLGSLIKSFDWKLDNKVTSGNVDMEEKFGITLQKAQPLHVVPIA  477 (478)
Q Consensus       409 ~~~~pFg~G~r~C~G~~~A~~e~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (478)
                      ..|+|||+|+|.|+|++||++|++++++.|+++|++++.++..   .......++++.++.++.|+.++
T Consensus       433 ~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~---~~~~~~~~~~~~~~~gl~v~~~~  498 (502)
T PLN02426        433 FKYPVFQAGLRVCLGKEMALMEMKSVAVAVVRRFDIEVVGRSN---RAPRFAPGLTATVRGGLPVRVRE  498 (502)
T ss_pred             cccCCCCCCCCCCccHHHHHHHHHHHHHHHHHHceEEEecCCC---CCCcccceeEEecCCCEEEEEEE
Confidence            5799999999999999999999999999999999999865421   11233345778888777777654


No 31 
>PLN02648 allene oxide synthase
Probab=100.00  E-value=1.8e-58  Score=434.04  Aligned_cols=409  Identities=15%  Similarity=0.189  Sum_probs=284.4

Q ss_pred             CCCCCCCCCCCCCCccccCCCC-----CCCCcHHHHHHHHhhCC-cEEEeeCCeeE-------EEecCHHHHHHHHHh--
Q 043641           26 KGSRKLPPGPTPLPIIGNLLEL-----GQKPHKSLADLAKVHGP-IMSLQFGQVTT-------VVISSAAMAKQVLQD--   90 (478)
Q Consensus        26 ~~~~~~~pgP~~~p~~G~~~~~-----~~~~~~~~~~~~~~yG~-v~~~~~~~~~~-------~vv~dp~~~~~i~~~--   90 (478)
                      ..+.+.|||+.|+|++|+++++     ..++..|+.+.++|||+ ||+++++|+++       ++++||++++.++.+  
T Consensus        13 ~~~~~~PPg~~g~P~iG~~~~~~~~~~~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~~~   92 (480)
T PLN02648         13 SLPLREIPGSYGLPFLGAIKDRLDYFYFQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDVSK   92 (480)
T ss_pred             CCCCCCCCCCCCCcCcchhhhhhhHHHhcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecchh
Confidence            4455678999999999999864     45668999999999999 99999988666       999999999999975  


Q ss_pred             --CCcccCCCCchhhhhhhccCCCc---cccCCCChhHHHHHhHhhhhccchhhhccccCchHHHHHHHHHHHHhhccCC
Q 043641           91 --HDTSLCNRNVPESIRSIQKDEYG---IPWLPVSTKWKKLRKICNLHIFTSQKLDANQDLRPKKIQQLVAFVQDSCRTG  165 (478)
Q Consensus        91 --~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~  165 (478)
                        +...+..... .....+   |.+   .++..+|+.|+++|+++. +.|+ ..++.+.+.|.+.++++++.|.+....+
T Consensus        93 ~~~~~~~~~~~~-~~~~l~---G~~~~~s~~~~~g~~H~r~Rrll~-~~f~-~~~~~~~~~m~~~~~~~~~~w~~~~~~~  166 (480)
T PLN02648         93 VDKRDVFTGTYM-PSTAFT---GGYRVLSYLDPSEPKHAKLKSFLF-ELLK-SRHRRFIPEFRAAFAELFDTWEAELAKK  166 (480)
T ss_pred             ccccccceeeec-cCcccc---CCceeeeecCCCCchHHHHHHHHH-HHHH-HhhhhhhhHHHHHHHHHHHHHHHHHhhC
Confidence              4444443222 222322   322   446778999999999998 8999 5778899999999999999996543345


Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHHHHHhccCCCCccccc-cccc-----CChhcHHHHHHH
Q 043641          166 EPSDVGQAAFDIVVNFLSNTIFSIDLADPNSDSAREFKDSMWGLMVEAKRPNLSDFFP-MLRK-----LDIQGVQRRITR  239 (478)
Q Consensus       166 ~~vd~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~~-----~~~~~~~~~~~~  239 (478)
                      +++|+.+.+..+++|++++++||.+.+...  ....+.............+.....+| ++..     ++....  ...+
T Consensus       167 ~~vdv~~~~~~lt~~vi~~~lfG~~~~~~~--l~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~i~~~~~~~~~--~~~~  242 (480)
T PLN02648        167 GKAEFNDPLDQMAFNFLCKALTGKDPSETA--LGSDGPALIQKWLALQLAPLASTGLPHVLEELLLHTFPLPFF--LVKS  242 (480)
T ss_pred             CCccccchHHHHHHHHHHHHHcCCCcchhh--hccchhHHHHHHHHHHhhHHHHcCchHHHHHHhhcccCCchh--hhhc
Confidence            679999999999999999999999765410  11111111111111000000000111 1110     000000  0011


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCCCcccHHHHHhccccCCCCChhhHHHHHHHHHHHhhChH-HHHHHHHHHHHhhcC
Q 043641          240 HTIKILEVLDRFIDQRLEQRQQNSFADSKDMLDTLLNISESEDIDRNDIKFVILAVTELLNNPE-ALSKARLELEQKVGK  318 (478)
Q Consensus       240 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dl~~~ll~~~~~~~l~~~~i~~~~~~l~~l~~~p~-~~~~l~~Ei~~~~~~  318 (478)
                      ..+++.+++++.+....+...+.+ -...++.+.++-...- .-+........+++|+|++||+ +|+++++|++.+++.
T Consensus       243 ~~~~~~~~~~~~~~~ll~~~~~~~-l~~~ei~~~~l~~~~~-~t~~~~~~~l~~~l~~L~~~p~~v~~klr~Ei~~~~~~  320 (480)
T PLN02648        243 DYDKLYDFFRASATEALDLAEKFG-ISREEALHNLLFVLGF-NAFGGFKIFFPALLKWVGRAGEELQARLAEEVRSAVKA  320 (480)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence            112222322222222222111111 1133444444321100 1112222344458999999995 999999999999863


Q ss_pred             -CCCCCccccCCCccHHHHHHHHhccCCCCCccCccccCCCeeee----cEEeCCCCEEEeehhhhccCCCCCCCCCCCC
Q 043641          319 -GNLIEESDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEIT----GFIIPKGAQVLVNAWAIGRDTSTWDDPYSFK  393 (478)
Q Consensus       319 -~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i~----g~~ip~g~~v~~~~~~~~~d~~~~~dp~~F~  393 (478)
                       +..++++++++||||++|++|+||++|+++... |.+.+|++++    ||.||||+.|+++.+.+||||++|+||++||
T Consensus       321 ~~~~~t~~~l~~l~yl~avi~EtLRl~p~v~~~~-r~a~~d~~l~~~~~g~~IpkG~~V~~~~~~~hrdp~~~~dP~~F~  399 (480)
T PLN02648        321 GGGGVTFAALEKMPLVKSVVYEALRIEPPVPFQY-GRAREDFVIESHDAAFEIKKGEMLFGYQPLVTRDPKVFDRPEEFV  399 (480)
T ss_pred             CCCCCCHHHHhcCHHHHHHHHHHHhhcCCccccc-ceecCCEEEecCCceEEECCCCEEEEChHHHhCCcccCCCcceeC
Confidence             456899999999999999999999999999854 8899999996    7999999999999999999999999999999


Q ss_pred             CCcccCCCcCcCCCcceeeec---------CCCCCCCCChHHHHHHHHHHHHHHHhhcc-eeecCCC
Q 043641          394 LERFLGSDVDVKGRNFELFPF---------GAGRRICLGLPLAIRMLYLMLGSLIKSFD-WKLDNKV  450 (478)
Q Consensus       394 P~R~l~~~~~~~~~~~~~~pF---------g~G~r~C~G~~~A~~e~~~~l~~ll~~f~-~~~~~~~  450 (478)
                      |+||++++.+.   ...+++|         |+|+|.|+|++||++|+++++++|+++|+ +++.++.
T Consensus       400 PeRf~~~~~~~---~~~~~~f~~g~~~~~~G~G~R~C~G~~~A~~e~~~~la~Ll~~f~~~~l~~~~  463 (480)
T PLN02648        400 PDRFMGEEGEK---LLKYVFWSNGRETESPTVGNKQCAGKDFVVLVARLFVAELFLRYDSFEIEVDT  463 (480)
T ss_pred             CCCCCCCCccc---cccccccCCCcccCCCCCCCccCccHHHHHHHHHHHHHHHHHHhCEEeecCCc
Confidence            99998753221   1234444         67789999999999999999999999998 9998773


No 32 
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00  E-value=1.2e-49  Score=370.39  Aligned_cols=342  Identities=27%  Similarity=0.348  Sum_probs=275.4

Q ss_pred             CcHHHHHHHHhhCCcEEEeeCCee--EEEecCHHHHHHHHHhCCcccCCCCchhhhh--hhccCCCccccCCCChhHHHH
Q 043641           51 PHKSLADLAKVHGPIMSLQFGQVT--TVVISSAAMAKQVLQDHDTSLCNRNVPESIR--SIQKDEYGIPWLPVSTKWKKL  126 (478)
Q Consensus        51 ~~~~~~~~~~~yG~v~~~~~~~~~--~~vv~dp~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~w~~~  126 (478)
                      +......+.+.||.+++++..+..  .++++++++++++++++. .+++........  .....+.+.++..+|+.|+++
T Consensus        24 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~r~  102 (411)
T COG2124          24 PRFFLERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDPR-FFSSALGAGLRPRLLRPVLGDGSLLTLDGPEHTRL  102 (411)
T ss_pred             hhhhHHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCcc-cccccccccccccchhhhccccceeecCCHHHHHH
Confidence            445566788899998888766644  799999999999998754 222222111111  011113343567889999999


Q ss_pred             HhHhhhhccchhhhccccCchHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHH
Q 043641          127 RKICNLHIFTSQKLDANQDLRPKKIQQLVAFVQDSCRTGEPSDVGQAAFDIVVNFLSNTIFSIDLADPNSDSAREFKDSM  206 (478)
Q Consensus       127 R~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~vd~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~  206 (478)
                      |++++ +.|+++.++.+.+.+.+.++++++.+ ..  + +.+++.+.+..+++++|+ .+||.+.+..     ..+....
T Consensus       103 Rkl~~-~~F~~~~~~~~~~~i~~~~~~~~~~~-~~--~-~~~~v~~~a~~l~~~vi~-~l~Gv~~~~~-----~~~~~~~  171 (411)
T COG2124         103 RKLLA-PAFTPRALRGYRPLIREIADRLLDDL-WQ--G-GADLVLDFAAELTLRVIA-ELLGVPLEDR-----PQLLRWS  171 (411)
T ss_pred             HHHhc-cccCHHHHHHHHHHHHHHHHHHHHhc-cc--C-CchhHHHHhhhhhHHHHH-HHhCCCHHHH-----HHHHHHH
Confidence            99998 99999999999999999999999998 32  3 788899999999999999 9999986543     2222222


Q ss_pred             HHHHHhccCCCCcccccccccCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccHHHHHhccccCC--CCC
Q 043641          207 WGLMVEAKRPNLSDFFPMLRKLDIQGVQRRITRHTIKILEVLDRFIDQRLEQRQQNSFADSKDMLDTLLNISESE--DID  284 (478)
Q Consensus       207 ~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dl~~~ll~~~~~~--~l~  284 (478)
                      .......        .|...   ......+..++..++.+++..+|++++..       ..+|+++.|+...+++  .+|
T Consensus       172 ~~~~~~~--------~~~~~---~~~~~~~~~~a~~~~~~~~~~li~~rR~~-------~~~dlls~l~~a~~~~~~~ls  233 (411)
T COG2124         172 DALLLRL--------DPDLG---PEEPWRRARAARRELDAYLRALIAERRAA-------PRDDLLSLLLSAEDDGGGRLS  233 (411)
T ss_pred             HHHHhcc--------CcccC---CcccHHHHHHHHHHHHHHHHHHHHHhccC-------CcccHHHHHHHHhhCCCCcCC
Confidence            2221110        01111   11124567788889999999999998842       2679999999887776  399


Q ss_pred             hhhHHHHHH----------------HHHHHhhChHHHHHHHHHHHHhhcCCCCCCccccCCCccHHHHHHHHhccCCCCC
Q 043641          285 RNDIKFVIL----------------AVTELLNNPEALSKARLELEQKVGKGNLIEESDITQLPYLQIIVKETLRLHPPVP  348 (478)
Q Consensus       285 ~~~i~~~~~----------------~l~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~  348 (478)
                      ++|+.++++                ++|.|++||++++++++|.+.                ||++++++|+||++|+++
T Consensus       234 d~Ei~~~~~~ll~AGheTTa~~l~~a~~~L~~~P~~~~~l~~e~~~----------------~~~~~~v~E~LR~~ppv~  297 (411)
T COG2124         234 DDEIRDELITLLVAGHETTANALAWALYALLRHPDQLAKLRAEPDR----------------PLLEAVVEETLRLYPPVP  297 (411)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHCchHHHHHHhCcch----------------HHHHHHHHHHHHhCCchh
Confidence            999988766                899999999999999999975                789999999999999999


Q ss_pred             ccCccccCCCeeeecEEeCCCCEEEeehhhhccCCCCCCCCCCCCCCcccCCCcCcCCCcceeeecCCCCCCCCChHHHH
Q 043641          349 LLLPRKASADVEITGFIIPKGAQVLVNAWAIGRDTSTWDDPYSFKLERFLGSDVDVKGRNFELFPFGAGRRICLGLPLAI  428 (478)
Q Consensus       349 ~~~~R~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~dp~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~~A~  428 (478)
                      . ++|.+++|++++|+.||||+.|+++.+++||||++|+||++|||+||.          ..|+|||+|+|.|+|.+||+
T Consensus       298 ~-~~R~~~~d~~igg~~Ip~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~----------~~~l~FG~G~H~ClG~~lA~  366 (411)
T COG2124         298 L-ARRVATEDVELGGYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFN----------NAHLPFGGGPHRCLGAALAR  366 (411)
T ss_pred             c-cceeccCCEeeCCEEeCCCCEEEecHhhhcCChhhCCChhhcCCCCCC----------CCCcCCCCCCccccCHHHHH
Confidence            9 889999999999999999999999999999999999999999999996          37999999999999999999


Q ss_pred             HHHHHHHHHHHhhcceeecCC
Q 043641          429 RMLYLMLGSLIKSFDWKLDNK  449 (478)
Q Consensus       429 ~e~~~~l~~ll~~f~~~~~~~  449 (478)
                      +|++++++.||++|++....+
T Consensus       367 ~E~~~~l~~ll~r~~~~~~~~  387 (411)
T COG2124         367 LELKVALAELLRRFPLLLLAE  387 (411)
T ss_pred             HHHHHHHHHHHHhCchhhcCC
Confidence            999999999999999887654


No 33 
>PF08492 SRP72:  SRP72 RNA-binding domain;  InterPro: IPR013699  The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=66.68  E-value=4.5  Score=25.74  Aligned_cols=8  Identities=38%  Similarity=0.526  Sum_probs=6.7

Q ss_pred             CCCcccCC
Q 043641          393 KLERFLGS  400 (478)
Q Consensus       393 ~P~R~l~~  400 (478)
                      ||||||..
T Consensus        44 DPERWLP~   51 (59)
T PF08492_consen   44 DPERWLPK   51 (59)
T ss_pred             CccccCch
Confidence            79999875


No 34 
>PRK06789 flagellar motor switch protein; Validated
Probab=62.67  E-value=11  Score=25.41  Aligned_cols=40  Identities=15%  Similarity=0.132  Sum_probs=33.1

Q ss_pred             HHHHHhccCCCCCccCccccCCCe--eeecEEeCCCCEEEee
Q 043641          336 IVKETLRLHPPVPLLLPRKASADV--EITGFIIPKGAQVLVN  375 (478)
Q Consensus       336 ~i~E~lRl~~~~~~~~~R~~~~~~--~i~g~~ip~g~~v~~~  375 (478)
                      -++|-+.+.+.....+.|.+.+++  .++|..|.+|..|.++
T Consensus        21 ~i~dll~L~~Gsvi~Ldk~~~epvdI~vNg~lia~GEvVvv~   62 (74)
T PRK06789         21 KIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKN   62 (74)
T ss_pred             EHHHHhcCCCCCEEEeCCcCCCCEEEEECCEEEeEEeEEEEC
Confidence            368899999999887878887755  4599999999999875


No 35 
>COG5598 Trimethylamine:corrinoid methyltransferase [Coenzyme metabolism]
Probab=50.43  E-value=53  Score=31.34  Aligned_cols=118  Identities=19%  Similarity=0.187  Sum_probs=68.1

Q ss_pred             CCChhhHHHHHHHHHHHhhChHHHHHHHHHHHHhhcCCCCCCccccCCCccHHHHHHHHhccCCCCCccCccccCCCeee
Q 043641          282 DIDRNDIKFVILAVTELLNNPEALSKARLELEQKVGKGNLIEESDITQLPYLQIIVKETLRLHPPVPLLLPRKASADVEI  361 (478)
Q Consensus       282 ~l~~~~i~~~~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~~~~~~~~~R~~~~~~~i  361 (478)
                      -++++++..+--+-.-++.+..+.-..- |..+++...+-.--++-+...+=.+.++|.++..|.......|-..+|+++
T Consensus        52 ~l~e~~le~Ih~aal~vLeeiGi~~~d~-~a~~l~~~aGA~v~~~g~rVr~~r~lv~~~l~~aps~ftl~aRnp~r~v~i  130 (526)
T COG5598          52 LLDEDELEAIHEAALRVLEEVGIEVRDD-EALELWKEAGAIVDEDGDRVRFPRGLVREALKSAPSSFTLHARNPKRDVQI  130 (526)
T ss_pred             ccCHHHHHHHHHHHHHHHHhcCcccCCH-HHHHHHHHhCCeecCCCceEeecHHHHHHHHHhCchhheeccCCcccceee
Confidence            5677777665444444444443333322 222222221111122233444558899999998888877776766777766


Q ss_pred             ecEEeCCCCEEEeehhhhccCCCCCCCCCCCCCCcccCCCcCcCCCcceeeecCCCCCCC---CChHHHHHHHHHHHHHH
Q 043641          362 TGFIIPKGAQVLVNAWAIGRDTSTWDDPYSFKLERFLGSDVDVKGRNFELFPFGAGRRIC---LGLPLAIRMLYLMLGSL  438 (478)
Q Consensus       362 ~g~~ip~g~~v~~~~~~~~~d~~~~~dp~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C---~G~~~A~~e~~~~l~~l  438 (478)
                      +|-                                           +..|.|++++++.|   -||+.+..+-.-=+++|
T Consensus       131 gG~-------------------------------------------~v~f~~~~gap~v~Dl~~grr~gtl~D~~n~~kL  167 (526)
T COG5598         131 GGN-------------------------------------------NVHFGPAYGAPNVRDLDKGRRYGTLEDYRNLAKL  167 (526)
T ss_pred             cCc-------------------------------------------eeEEEecCCCceeeeccCCcccchHHHHHHHHHH
Confidence            642                                           22455666666666   46666777777777777


Q ss_pred             Hhhcc
Q 043641          439 IKSFD  443 (478)
Q Consensus       439 l~~f~  443 (478)
                      .+.++
T Consensus       168 a~~~~  172 (526)
T COG5598         168 AQHAP  172 (526)
T ss_pred             Hhhcc
Confidence            77775


No 36 
>PF12508 DUF3714:  Protein of unknown function (DUF3714) ;  InterPro: IPR022187  Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. 
Probab=47.94  E-value=17  Score=30.23  Aligned_cols=43  Identities=23%  Similarity=0.354  Sum_probs=33.4

Q ss_pred             CCccHHHHHHHHhccCCCCCccCccc-cCCCeeeecEEeCCCCEEEe
Q 043641          329 QLPYLQIIVKETLRLHPPVPLLLPRK-ASADVEITGFIIPKGAQVLV  374 (478)
Q Consensus       329 ~lp~l~a~i~E~lRl~~~~~~~~~R~-~~~~~~i~g~~ip~g~~v~~  374 (478)
                      .-..+.|||.|+.-.......   |. ..+|+.++|..|||||.|..
T Consensus        51 ~~n~I~A~V~~~qtv~~Gs~v---rlRLle~i~i~g~~IPkgt~l~G   94 (200)
T PF12508_consen   51 EKNTIRAVVDGTQTVVDGSRV---RLRLLEDIQIGGILIPKGTYLYG   94 (200)
T ss_pred             CCCeEEEEEecceEEeCCCEE---EEEEcCceEECCEEeCCCCEEEE
Confidence            455678999999877666643   43 46889999999999998865


No 37 
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=46.79  E-value=8.8  Score=23.60  Aligned_cols=10  Identities=50%  Similarity=1.046  Sum_probs=8.6

Q ss_pred             ecCCCCCCCC
Q 043641          413 PFGAGRRICL  422 (478)
Q Consensus       413 pFg~G~r~C~  422 (478)
                      +||.|.|.|-
T Consensus        13 kfg~GsrsC~   22 (56)
T KOG3506|consen   13 KFGQGSRSCR   22 (56)
T ss_pred             ccCCCCccee
Confidence            7999999884


No 38 
>PF05952 ComX:  Bacillus competence pheromone ComX;  InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible.  DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=46.18  E-value=21  Score=22.50  Aligned_cols=19  Identities=37%  Similarity=0.431  Sum_probs=15.3

Q ss_pred             HHHHHhhChHHHHHHHHHH
Q 043641          294 AVTELLNNPEALSKARLEL  312 (478)
Q Consensus       294 ~l~~l~~~p~~~~~l~~Ei  312 (478)
                      ++.+|.+||++.++|.+.=
T Consensus         5 iV~YLv~nPevl~kl~~g~   23 (57)
T PF05952_consen    5 IVNYLVQNPEVLEKLKEGE   23 (57)
T ss_pred             HHHHHHHChHHHHHHHcCC
Confidence            4568999999999997643


No 39 
>PF15330 SIT:  SHP2-interacting transmembrane adaptor protein, SIT
Probab=43.38  E-value=40  Score=24.76  Aligned_cols=11  Identities=36%  Similarity=0.253  Sum_probs=7.3

Q ss_pred             CCCccccCCCC
Q 043641           37 PLPIIGNLLEL   47 (478)
Q Consensus        37 ~~p~~G~~~~~   47 (478)
                      .-|+.||+-..
T Consensus        45 ~~p~YgNL~~~   55 (107)
T PF15330_consen   45 DDPCYGNLELQ   55 (107)
T ss_pred             CCccccccccc
Confidence            36788887544


No 40 
>PF05393 Hum_adeno_E3A:  Human adenovirus early E3A glycoprotein;  InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=37.89  E-value=55  Score=22.64  Aligned_cols=18  Identities=28%  Similarity=0.815  Sum_probs=8.6

Q ss_pred             ChhHHHHHHHHHHHHHHH
Q 043641            1 MEILISCVLWLLFTWVWV   18 (478)
Q Consensus         1 m~l~~~~~~~~~~~~~~~   18 (478)
                      |+.+++++..+++++.|+
T Consensus        35 m~~lvI~~iFil~Vilwf   52 (94)
T PF05393_consen   35 MWFLVICGIFILLVILWF   52 (94)
T ss_pred             hhHHHHHHHHHHHHHHHH
Confidence            454555555444444443


No 41 
>PF06145 Corona_NS1:  Coronavirus nonstructural protein NS1;  InterPro: IPR009314 One of the members of this family is a 4.9 kDa proteins, encoded by Bovine coronavirus NS1 [].
Probab=37.83  E-value=33  Score=17.30  Aligned_cols=15  Identities=13%  Similarity=0.191  Sum_probs=12.7

Q ss_pred             ccccCCCeeeeeecC
Q 043641          464 TLQKAQPLHVVPIAI  478 (478)
Q Consensus       464 ~~~~~~~~~~~~~~~  478 (478)
                      +++|.+++++.+|+|
T Consensus        15 ilhp~nhv~liir~i   29 (29)
T PF06145_consen   15 ILHPFNHVNLIIRPI   29 (29)
T ss_pred             ccCcccceeEEEecC
Confidence            678889999998876


No 42 
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=37.52  E-value=1.2e+02  Score=28.98  Aligned_cols=47  Identities=17%  Similarity=0.144  Sum_probs=26.3

Q ss_pred             CCcHHHHHHH-HhhCCcEEEeeCCeeEEEecCHHHHHHHHHhCCcccC
Q 043641           50 KPHKSLADLA-KVHGPIMSLQFGQVTTVVISSAAMAKQVLQDHDTSLC   96 (478)
Q Consensus        50 ~~~~~~~~~~-~~yG~v~~~~~~~~~~~vv~dp~~~~~i~~~~~~~~~   96 (478)
                      ++.+.+.-.. =+||.|++-.+-++.+-|=.-|+.-++=+.+....|+
T Consensus       210 ~pl~l~eli~~Grfg~V~KaqL~~~~VAVKifp~~~kqs~~~Ek~Iy~  257 (534)
T KOG3653|consen  210 DPLQLLELIGRGRFGCVWKAQLDNRLVAVKIFPEQEKQSFQNEKNIYS  257 (534)
T ss_pred             CchhhHHHhhcCccceeehhhccCceeEEEecCHHHHHHHHhHHHHHh
Confidence            3444444333 4688888877777655554445555555554444443


No 43 
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=36.98  E-value=8  Score=35.97  Aligned_cols=44  Identities=16%  Similarity=0.231  Sum_probs=34.2

Q ss_pred             CCccHHHHHHHHhccCCCCCccCccc-cCCCeeeecEEeCCCCEEEee
Q 043641          329 QLPYLQIIVKETLRLHPPVPLLLPRK-ASADVEITGFIIPKGAQVLVN  375 (478)
Q Consensus       329 ~lp~l~a~i~E~lRl~~~~~~~~~R~-~~~~~~i~g~~ip~g~~v~~~  375 (478)
                      .-..+.|||.|+.-+.-....   |. ..+|+.++|..|||||.|+..
T Consensus       254 ~~n~I~A~V~~~qtv~~G~~v---rlRLle~~~v~~~~ipkgt~l~g~  298 (410)
T TIGR03779       254 ERNTIRACVHETQTVVDGSAV---KLRLLEPIQAGDLVIPKGTVLYGT  298 (410)
T ss_pred             CCCceEEEEcCceEEecCCEE---EEEEcCceeeCCEEecCCCEEEEE
Confidence            456788999999887766543   43 458999999999999988654


No 44 
>PRK05933 type III secretion system protein; Validated
Probab=34.58  E-value=46  Score=29.69  Aligned_cols=43  Identities=21%  Similarity=0.317  Sum_probs=35.1

Q ss_pred             HHHHHHHHhccCCCCCccCcccc-CC--CeeeecEEeCCCCEEEee
Q 043641          333 LQIIVKETLRLHPPVPLLLPRKA-SA--DVEITGFIIPKGAQVLVN  375 (478)
Q Consensus       333 l~a~i~E~lRl~~~~~~~~~R~~-~~--~~~i~g~~ip~g~~v~~~  375 (478)
                      ++.-|+|.|++.+....-+.|.+ .+  |+.++|..|.+|.+|+++
T Consensus       317 T~l~IkELL~L~~GSVIeLDk~a~GEpVDI~VNGrLIARGEVVVVd  362 (372)
T PRK05933        317 YSLSVGEFLKLGPGSILQFDGVHPTLGVDIILNGAKVGRGEIIALG  362 (372)
T ss_pred             ccccHHHHhccCCCCEEEeCCcCCCCCEEEEECCEEEeeeeEEEEC
Confidence            55678999999999988776664 34  566799999999999886


No 45 
>PF09201 SRX:  SRX;  InterPro: IPR015284  The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel.  This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=34.24  E-value=40  Score=25.70  Aligned_cols=22  Identities=23%  Similarity=0.409  Sum_probs=16.3

Q ss_pred             CCCCChHHHHHHHHHHHHHHHh
Q 043641          419 RICLGLPLAIRMLYLMLGSLIK  440 (478)
Q Consensus       419 r~C~G~~~A~~e~~~~l~~ll~  440 (478)
                      -.|.|+.||+.++-.++.+|+.
T Consensus        18 yN~~gKKFsE~QiN~FIs~lIt   39 (148)
T PF09201_consen   18 YNCLGKKFSETQINAFISHLIT   39 (148)
T ss_dssp             EETTS----HHHHHHHHHHHHH
T ss_pred             ecccchHHHHHHHHHHHHHHhc
Confidence            3699999999999999999986


No 46 
>PF12273 RCR:  Chitin synthesis regulation, resistance to Congo red;  InterPro: IPR020999  RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 []. 
Probab=32.40  E-value=64  Score=24.71  Aligned_cols=15  Identities=13%  Similarity=0.350  Sum_probs=6.1

Q ss_pred             hHHHHHHHHHHHHHH
Q 043641            3 ILISCVLWLLFTWVW   17 (478)
Q Consensus         3 l~~~~~~~~~~~~~~   17 (478)
                      +++++++++++++++
T Consensus         6 ~iii~~i~l~~~~~~   20 (130)
T PF12273_consen    6 AIIIVAILLFLFLFY   20 (130)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344444444333333


No 47 
>PF14483 Cut8_M:  Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=32.30  E-value=1e+02  Score=17.62  Aligned_cols=25  Identities=16%  Similarity=0.372  Sum_probs=15.6

Q ss_pred             CChhhHHHHHHHHHH-HhhChHHHHHHHH
Q 043641          283 IDRNDIKFVILAVTE-LLNNPEALSKARL  310 (478)
Q Consensus       283 l~~~~i~~~~~~l~~-l~~~p~~~~~l~~  310 (478)
                      ++.+++...   +.. +.+||++++.++.
T Consensus        10 Ld~~qL~~l---L~~l~~~HPei~~~i~~   35 (38)
T PF14483_consen   10 LDKDQLQSL---LQSLCERHPEIQQEIRS   35 (38)
T ss_dssp             S-HHHHHHH---HHHHHHHSTHHHHHHHT
T ss_pred             cCHHHHHHH---HHHHHHhChhHHHHHHh
Confidence            455666653   333 3499999988764


No 48 
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=31.57  E-value=1.2e+02  Score=27.28  Aligned_cols=77  Identities=14%  Similarity=0.105  Sum_probs=61.2

Q ss_pred             ccHHHHHhccccCCCCChhhHHHHHHHHHHHhhChHHHHHHHHHHHHhhcCCCCCCccccC--CCccHHHHHHHHhccCC
Q 043641          268 KDMLDTLLNISESEDIDRNDIKFVILAVTELLNNPEALSKARLELEQKVGKGNLIEESDIT--QLPYLQIIVKETLRLHP  345 (478)
Q Consensus       268 ~dl~~~ll~~~~~~~l~~~~i~~~~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~l~--~lp~l~a~i~E~lRl~~  345 (478)
                      ..+.+.|....-  .-+.|.|+.++-++-+-..+|...+.|.++-.-.+-+++.++...|+  ++.|.--.|.|+.|-.+
T Consensus       330 ~aLrd~L~aL~T--PGtWDHI~~QiGMFSyTGLtp~qV~~li~~h~vyLl~~GRInisGLN~~NveyVAkAIde~Vr~~~  407 (410)
T KOG1412|consen  330 TALRDHLVALKT--PGTWDHITQQIGMFSYTGLTPAQVDHLIENHKVYLLSDGRINISGLNMKNVEYVAKAIDETVRAIK  407 (410)
T ss_pred             HHHHHHHHhcCC--CCcHHHHHhhccceeecCCCHHHHHHHHHhceEEEecCCcEeeeccccccHHHHHHHHHHHHHhhc
Confidence            345666666544  56789999999999999999999999988887777667777777664  68999999999999665


Q ss_pred             C
Q 043641          346 P  346 (478)
Q Consensus       346 ~  346 (478)
                      .
T Consensus       408 ~  408 (410)
T KOG1412|consen  408 S  408 (410)
T ss_pred             c
Confidence            3


No 49 
>PF13625 Helicase_C_3:  Helicase conserved C-terminal domain
Probab=30.56  E-value=1.3e+02  Score=22.95  Aligned_cols=40  Identities=18%  Similarity=0.231  Sum_probs=30.2

Q ss_pred             CCCcHHHHHHHHhhCCcEEEeeCCeeEEEecCHHHHHHHHHh
Q 043641           49 QKPHKSLADLAKVHGPIMSLQFGQVTTVVISSAAMAKQVLQD   90 (478)
Q Consensus        49 ~~~~~~~~~~~~~yG~v~~~~~~~~~~~vv~dp~~~~~i~~~   90 (478)
                      ++....+++|.++||.+--.  .+...+...|++.++++...
T Consensus        74 ~~v~~~i~~w~~~~g~v~l~--~~~~~l~~~d~~~l~~l~~~  113 (129)
T PF13625_consen   74 QNVEQSIEDWARRYGRVRLY--KGAYLLECDDPELLDELLAD  113 (129)
T ss_pred             HHHHHHHHHHHHhcCCEEEe--cCeEEEEECCHHHHHHHHhC
Confidence            34466789999999976442  24567788999999999864


No 50 
>PF03672 UPF0154:  Uncharacterised protein family (UPF0154);  InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=30.29  E-value=25  Score=22.78  Aligned_cols=27  Identities=19%  Similarity=0.196  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHhhccccCCCCCCCC
Q 043641            7 CVLWLLFTWVWVITLRSFSKGSRKLPP   33 (478)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~p   33 (478)
                      +++++.++..|++.++...+.-.+.||
T Consensus         5 lali~G~~~Gff~ar~~~~k~l~~NPp   31 (64)
T PF03672_consen    5 LALIVGAVIGFFIARKYMEKQLKENPP   31 (64)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            333444445555555554444444444


No 51 
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=29.32  E-value=22  Score=28.41  Aligned_cols=36  Identities=19%  Similarity=0.392  Sum_probs=24.4

Q ss_pred             CCCCCCcccCCCcCcCCCcceeeecCCCCCCCCChH
Q 043641          390 YSFKLERFLGSDVDVKGRNFELFPFGAGRRICLGLP  425 (478)
Q Consensus       390 ~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G~~  425 (478)
                      -+|+|++|-.---....+....+-|.+|.-.|-|..
T Consensus        35 aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaK   70 (185)
T COG2101          35 AEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAK   70 (185)
T ss_pred             CccCHhHCCeeEEEecCCcceEEEEecCcEEEeccC
Confidence            379999994321111223457888999999999975


No 52 
>PF00558 Vpu:  Vpu protein;  InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=27.70  E-value=86  Score=21.58  Aligned_cols=22  Identities=23%  Similarity=0.382  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHhhccccC
Q 043641            5 ISCVLWLLFTWVWVITLRSFSK   26 (478)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~   26 (478)
                      .+.+++++.+++|.+.+..+++
T Consensus        11 aliv~~iiaIvvW~iv~ieYrk   32 (81)
T PF00558_consen   11 ALIVALIIAIVVWTIVYIEYRK   32 (81)
T ss_dssp             HHHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444556666666655544


No 53 
>COG1886 FliN Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.28  E-value=75  Score=24.59  Aligned_cols=41  Identities=29%  Similarity=0.389  Sum_probs=33.6

Q ss_pred             HHHHHHhccCCCCCccCccccCCCeee--ecEEeCCCCEEEee
Q 043641          335 IIVKETLRLHPPVPLLLPRKASADVEI--TGFIIPKGAQVLVN  375 (478)
Q Consensus       335 a~i~E~lRl~~~~~~~~~R~~~~~~~i--~g~~ip~g~~v~~~  375 (478)
                      .-+.|-+++.+.....+.+.+..++.|  +|..|-+|..|.+.
T Consensus        84 ~~l~ell~l~~Gsvi~Ld~~~~~~VdI~vNg~~Ig~GEvVvvd  126 (136)
T COG1886          84 MPLGELLALGKGSVIELDKLAGEPVDILVNGRLIGRGEVVVVD  126 (136)
T ss_pred             eeHHHHHhcCCCCEEEcCCcCCCceEEEECCEEEEEEeEEEEC
Confidence            357889999999888788888776554  99999999999874


No 54 
>PF12444 Sox_N:  Sox developmental protein N terminal ;  InterPro: IPR022151  This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes. 
Probab=24.01  E-value=55  Score=22.72  Aligned_cols=21  Identities=19%  Similarity=0.428  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHhhcceeecCC
Q 043641          429 RMLYLMLGSLIKSFDWKLDNK  449 (478)
Q Consensus       429 ~e~~~~l~~ll~~f~~~~~~~  449 (478)
                      ..|+-++..+|+-|||.|++-
T Consensus        60 ~~IrdAVsqVLkGYDWtLVPm   80 (84)
T PF12444_consen   60 VCIRDAVSQVLKGYDWTLVPM   80 (84)
T ss_pred             HHHHHHHHHHhccCCceeeec
Confidence            457889999999999999863


No 55 
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.87  E-value=65  Score=21.26  Aligned_cols=19  Identities=21%  Similarity=0.333  Sum_probs=8.6

Q ss_pred             HHHHHhhccccCCCCCCCC
Q 043641           15 WVWVITLRSFSKGSRKLPP   33 (478)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~p   33 (478)
                      ..+++..+...+.-++.||
T Consensus        20 ~G~fiark~~~k~lk~NPp   38 (71)
T COG3763          20 GGFFIARKQMKKQLKDNPP   38 (71)
T ss_pred             HHHHHHHHHHHHHHhhCCC
Confidence            3344444444444445555


No 56 
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=22.54  E-value=1.7e+02  Score=20.04  Aligned_cols=8  Identities=0%  Similarity=0.102  Sum_probs=3.7

Q ss_pred             HHHHHHHH
Q 043641           53 KSLADLAK   60 (478)
Q Consensus        53 ~~~~~~~~   60 (478)
                      .+++.+|+
T Consensus        55 DQVrAlHR   62 (92)
T PHA02681         55 DQVRAFHA   62 (92)
T ss_pred             HHHHHHHH
Confidence            34455554


No 57 
>PTZ00218 40S ribosomal protein S29; Provisional
Probab=22.38  E-value=39  Score=21.06  Aligned_cols=10  Identities=40%  Similarity=0.996  Sum_probs=8.5

Q ss_pred             ecCCCCCCCC
Q 043641          413 PFGAGRRICL  422 (478)
Q Consensus       413 pFg~G~r~C~  422 (478)
                      -||.|.|.|.
T Consensus        11 ~yGkGsr~C~   20 (54)
T PTZ00218         11 TYGKGSRQCR   20 (54)
T ss_pred             cCCCCCCeee
Confidence            5999999985


No 58 
>PF15240 Pro-rich:  Proline-rich
Probab=21.39  E-value=66  Score=26.03  Aligned_cols=12  Identities=25%  Similarity=0.313  Sum_probs=5.8

Q ss_pred             ChhHHHHHHHHH
Q 043641            1 MEILISCVLWLL   12 (478)
Q Consensus         1 m~l~~~~~~~~~   12 (478)
                      |+||++.+++|+
T Consensus         1 MLlVLLSvALLA   12 (179)
T PF15240_consen    1 MLLVLLSVALLA   12 (179)
T ss_pred             ChhHHHHHHHHH
Confidence            555555444443


No 59 
>PF13893 RRM_5:  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=21.00  E-value=2.1e+02  Score=17.45  Aligned_cols=34  Identities=15%  Similarity=0.190  Sum_probs=23.9

Q ss_pred             HHHHHhhCCcEEEeeCC----eeEEEecCHHHHHHHHH
Q 043641           56 ADLAKVHGPIMSLQFGQ----VTTVVISSAAMAKQVLQ   89 (478)
Q Consensus        56 ~~~~~~yG~v~~~~~~~----~~~~vv~dp~~~~~i~~   89 (478)
                      .+.-.+||+|-.+.+..    .-++-..+.+.++....
T Consensus         2 ~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~   39 (56)
T PF13893_consen    2 YKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIE   39 (56)
T ss_dssp             HHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHH
T ss_pred             hHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence            45678999988877543    34566688888888775


No 60 
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=20.67  E-value=62  Score=26.32  Aligned_cols=57  Identities=12%  Similarity=0.250  Sum_probs=33.7

Q ss_pred             CCCCCCcccCCCcCcCCCcceeeecCCCCCCCCC-hHHHHHH-HHHHHHHHHhhcceee
Q 043641          390 YSFKLERFLGSDVDVKGRNFELFPFGAGRRICLG-LPLAIRM-LYLMLGSLIKSFDWKL  446 (478)
Q Consensus       390 ~~F~P~R~l~~~~~~~~~~~~~~pFg~G~r~C~G-~~~A~~e-~~~~l~~ll~~f~~~~  446 (478)
                      -+|+||+|=.---....+....+-|++|+=.|.| +.-.... ..--++.+|++..+..
T Consensus        29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~i~~~L~~~g~~~   87 (174)
T cd04516          29 AEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTGAKSEDDSKLAARKYARIIQKLGFPA   87 (174)
T ss_pred             CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCCCC
Confidence            5899999832211112234467889999999998 3332222 2233446677766553


No 61 
>PHA03162 hypothetical protein; Provisional
Probab=20.16  E-value=69  Score=24.18  Aligned_cols=24  Identities=17%  Similarity=0.264  Sum_probs=20.2

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHHH
Q 043641          415 GAGRRICLGLPLAIRMLYLMLGSL  438 (478)
Q Consensus       415 g~G~r~C~G~~~A~~e~~~~l~~l  438 (478)
                      ++|.+.|||+...+=||..=|+.|
T Consensus         2 ~~~~k~~pk~~~tmEeLaaeL~kL   25 (135)
T PHA03162          2 AGGSKKCPKAQPTMEDLAAEIAKL   25 (135)
T ss_pred             CCCcCCCCccCCCHHHHHHHHHHH
Confidence            569999999999988888777765


Done!