BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043643
(634 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 2 TCPICL-----GSLR-----RGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEW 50
TC IC LR + + + EC+HSFH CC++ V+ NR CP+C+ +W
Sbjct: 17 TCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNR-CPLCQQDW 74
>pdb|1TZN|AA Chain a, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|BB Chain b, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|CC Chain c, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|DD Chain d, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|EE Chain e, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|FF Chain f, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|GG Chain g, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|HH Chain h, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|II Chain i, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|JJ Chain j, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|KK Chain k, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|LL Chain l, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|MM Chain m, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|OO Chain o, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
Length = 181
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 6/128 (4%)
Query: 165 RAPIDLVTVLDVSGSMSSKLPLLKRAVHFIIQNLGSAD-RLSIVIFSSVARRIFPLQRMT 223
R DL VLD SGS+++ + V + + S + RLS ++FSS A I PL
Sbjct: 3 RRAFDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPL--TG 60
Query: 224 DSGR-ENAIRAINTLSSNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLR 282
D G+ + + +S G T I EGLK +++ + II L+DG+ + L
Sbjct: 61 DRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGK--LDGLV 118
Query: 283 NSYTQDEA 290
SY + EA
Sbjct: 119 PSYAEKEA 126
>pdb|1SHU|X Chain X, Crystal Structure Of The Von Willebrand Factor A Domain Of
Human Capillary Morphogenesis Protein 2: An Anthrax
Toxin Receptor
Length = 182
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 6/128 (4%)
Query: 165 RAPIDLVTVLDVSGSMSSKLPLLKRAVHFIIQNLGSAD-RLSIVIFSSVARRIFPLQRMT 223
R DL VLD SGS+++ + V + + S + RLS ++FSS A I PL
Sbjct: 4 RRAFDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPL--TG 61
Query: 224 DSGR-ENAIRAINTLSSNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLR 282
D G+ + + +S G T I EGLK +++ + II L+DG+ + L
Sbjct: 62 DRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGK--LDGLV 119
Query: 283 NSYTQDEA 290
SY + EA
Sbjct: 120 PSYAEKEA 127
>pdb|1SHT|X Chain X, Crystal Structure Of The Von Willebrand Factor A Domain Of
Human Capillary Morphogenesis Protein 2: An Anthrax
Toxin Receptor
Length = 181
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 6/128 (4%)
Query: 165 RAPIDLVTVLDVSGSMSSKLPLLKRAVHFIIQNLGSAD-RLSIVIFSSVARRIFPLQRMT 223
R DL VLD SGS+++ + V + + S + RLS ++FSS A I PL
Sbjct: 4 RRAFDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPL--TG 61
Query: 224 DSGR-ENAIRAINTLSSNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLR 282
D G+ + + +S G T I EGLK +++ + II L+DG+ + L
Sbjct: 62 DRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGK--LDGLV 119
Query: 283 NSYTQDEA 290
SY + EA
Sbjct: 120 PSYAEKEA 127
>pdb|4FX5|A Chain A, Von Willebrand Factor Type A From Catenulispora Acidiphila
Length = 464
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 75/197 (38%), Gaps = 34/197 (17%)
Query: 171 VTVLDVSGSMS---SKLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFP----LQRMT 223
V ++D SGS +K K A I L ++V + AR ++P L R
Sbjct: 81 VIIIDCSGSXDYPRTKXXAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPTGGQLLRAD 140
Query: 224 DSGRENAIRAINTLSSNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRN 283
R A A+ L +NGGT L + R+ + S + ILL+DG+D
Sbjct: 141 YQSRAAAKEAVGRLHANGGTAXGRWLAQAGRIFDT--APSAIKHAILLTDGKDE------ 192
Query: 284 SYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPTFPVHTFGFGLEHDSEAMHAIADAS 343
S P++ + SSI F G G + + + + IADA
Sbjct: 193 -------SETPAD---LARAIQSSIG---------NFTADCRGIGEDWEPKELRKIADAL 233
Query: 344 GGTFSFIETLSILQDAF 360
GT I + L + F
Sbjct: 234 LGTVGIIRDPATLAEDF 250
>pdb|1T6B|Y Chain Y, Crystal Structure Of B. Anthracis Protective Antigen
Complexed With Human Anthrax Toxin Receptor
Length = 189
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 6/128 (4%)
Query: 165 RAPIDLVTVLDVSGSMSSKLPLLKRAVHFIIQNLGSAD-RLSIVIFSSVARRIFPLQRMT 223
R DL VLD SGS+++ + V + + S + RLS ++FSS A I PL
Sbjct: 11 RRAFDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPL--TG 68
Query: 224 DSGR-ENAIRAINTLSSNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLR 282
D G+ + + +S G T I EGLK +++ + II L+DG+ + L
Sbjct: 69 DRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGK--LDGLV 126
Query: 283 NSYTQDEA 290
SY + EA
Sbjct: 127 PSYAEKEA 134
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 3 CPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICR 47
CPICL L+ + T EC H F CI ++ GN+ CP CR
Sbjct: 37 CPICLDMLKN----TMTTKECLHRFCADCIITALRSGNKECPTCR 77
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 3 CPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICR 47
CPICL L+ + T EC H F CI ++ GN+ CP CR
Sbjct: 57 CPICLDMLKN----TMTTKECLHRFCADCIITALRSGNKECPTCR 97
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 3 CPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICR 47
CPICL L+ + T EC H F CI ++ GN+ CP CR
Sbjct: 56 CPICLDMLKN----TMTTKECLHRFCADCIITALRSGNKECPTCR 96
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 13/59 (22%)
Query: 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQH-----GNRICPICRCEWKDVPF 55
TCPICL L+ +A+C+HSF CI N + G CP+CR + PF
Sbjct: 21 TCPICLELLKEP-----VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY---PF 71
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 37.0 bits (84), Expect = 0.029, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAAN-----VQHGNRICPICRCEWK 51
TCPICL L + + +C HSF C+ AN + G CP+CR ++
Sbjct: 21 TCPICLELLTQP-----LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 3 CPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRC 48
CPIC +G VA C H FH C++ +Q CP+CRC
Sbjct: 43 CPICCSEYVKGD-VAT-ELPCHHYFHKPCVSIWLQKSG-TCPVCRC 85
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 2 TCPICLGSLRR--GQGVAIFTAECSHSFHFCCIAANVQHGNRICPICR 47
+CPIC+ G I + EC H F C+ ++++ N CP CR
Sbjct: 5 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCR 51
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 2 TCPICLGSLRR--GQGVAIFTAECSHSFHFCCIAANVQHGNRICPICR 47
+CPIC+ G I + EC H F C+ ++++ N CP CR
Sbjct: 9 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCR 55
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 2 TCPICLGSLRR--GQGVAIFTAECSHSFHFCCIAANVQHGNRICPICR 47
+CPIC+ G I + EC H F C+ ++++ N CP CR
Sbjct: 74 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCR 120
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 2 TCPICLGSLRR--GQGVAIFTAECSHSFHFCCIAANVQHGNRICPICR 47
+CPIC+ G I + EC H F C+ ++++ N CP CR
Sbjct: 12 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCR 58
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 3 CPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICR 47
C +CL L G+ A F C H FH C+ + + CP+CR
Sbjct: 8 CAVCLAELEDGEE-ARFLPRCGHGFHAECVDMWLG-SHSTCPLCR 50
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 2 TCPICLGSLRR--GQGVAIFTAECSHSFHFCCIAANVQHGNRICPICR 47
+CPIC+ G I + EC H F C+ ++++ N CP CR
Sbjct: 17 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCR 63
>pdb|2IOP|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|C Chain C, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|D Chain D, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOQ|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
pdb|2IOQ|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
Length = 624
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 319 TFPVHTFGFGLEHDSEAMHAIADASGGTFSFIETLSILQDAFARCIG----GLLSVVSQD 374
T + G G+ D H A GT SF+E+L Q ++ IG G S
Sbjct: 75 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA 134
Query: 375 VKLTIRSKSAGVRIGSIPSGRYNSEVLDEGQQAVIDI 411
K+T+R+++AG + P E EG+ V DI
Sbjct: 135 DKVTVRTRAAGEK----PENGVFWESAGEGEYTVADI 167
>pdb|1Y4S|A Chain A, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4S|B Chain B, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4U|A Chain A, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4U|B Chain B, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
Length = 559
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 319 TFPVHTFGFGLEHDSEAMHAIADASGGTFSFIETLSILQDAFARCIG----GLLSVVSQD 374
T + G G+ D H A GT SF+E+L Q ++ IG G S
Sbjct: 75 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA 134
Query: 375 VKLTIRSKSAGVRIGSIPSGRYNSEVLDEGQQAVIDI 411
K+T+R+++AG + P E EG+ V DI
Sbjct: 135 DKVTVRTRAAGEK----PENGVFWESAGEGEYTVADI 167
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
P1 Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
Length = 118
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 3 CPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPI 45
CPICL +LR C H F CI +++ CP+
Sbjct: 21 CPICLMALREA-----VQTPCGHRFCKACIIKSIRDAGHKCPV 58
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 3 CPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPI 45
CPICL +LR C H F CI +++ CP+
Sbjct: 9 CPICLMALREA-----VQTPCGHRFCKACIIKSIRDAGHKCPV 46
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 3 CPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPI 45
CPICL +LR C H F CI +++ CP+
Sbjct: 21 CPICLMALREA-----VQTPCGHRFCKACIIKSIRDAGHKCPV 58
>pdb|2IOR|A Chain A, Crystal Structure Of The N-Terminal Domain Of Htpg, The
Escherichia Coli Hsp90, Bound To Adp
Length = 235
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 319 TFPVHTFGFGLEHDSEAMHAIADASGGTFSFIETLSILQDAFARCIG----GLLSVVSQD 374
T + G G+ D H A GT SF+E+L Q ++ IG G S
Sbjct: 95 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA 154
Query: 375 VKLTIRSKSAGVRIGSIPSGRYNSEVLDEGQQAVIDI 411
K+T+R+++AG + P E EG+ V DI
Sbjct: 155 DKVTVRTRAAGEK----PENGVFWESAGEGEYTVADI 187
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 3 CPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPI 45
CPICL +LR C H F CI +++ CP+
Sbjct: 28 CPICLMALREA-----VQTPCGHRFCKACIIKSIRDAGHKCPV 65
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 23 CSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQAPG 59
C+H+FHF CI+ ++ ++CP+ EW+ FQ G
Sbjct: 57 CNHAFHFHCISRWLK-TRQVCPLDNREWE---FQKYG 89
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 23 CSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQAPG 59
C+H+FHF CI+ ++ ++CP+ EW+ FQ G
Sbjct: 84 CNHAFHFHCISRWLK-TRQVCPLDNREWE---FQKYG 116
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp
Abasic Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp
Abasic Site Containing Dna-Duplex
Length = 98
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 23 CSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQAPG 59
C+H+FHF CI+ ++ ++CP+ EW+ FQ G
Sbjct: 65 CNHAFHFHCISRWLK-TRQVCPLDNREWE---FQKYG 97
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 23 CSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQAPG 59
C+H+FHF CI+ ++ ++CP+ EW+ FQ G
Sbjct: 73 CNHAFHFHCISRWLK-TRQVCPLDNREWE---FQKYG 105
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 3 CPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICR 47
CP+C G+ V C+H FH CI ++ + CP+CR
Sbjct: 18 CPVCKEDYALGESVR--QLPCNHLFHDSCIVPWLEQHDS-CPVCR 59
>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease
Of Toll Pathway
pdb|2XXL|B Chain B, Crystal Structure Of Drosophila Grass Clip Serine Protease
Of Toll Pathway
Length = 408
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 28 HFCCIAANVQHGNRICPICRCEWKDVPFQAPGSVIDARRNNMARARVS 75
HFCC +AN+QH +++ + +KD F G+ + R +N ++S
Sbjct: 86 HFCCPSANIQHNSKVMSL----FKDENFDC-GNFLSQRVSNGYEVKLS 128
>pdb|1V87|A Chain A, Solution Structure Of The Ring-H2 Finger Domain Of Mouse
Deltex Protein 2
Length = 114
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 17/62 (27%)
Query: 3 CPICLGSLRRGQGVAIFT-------------AECSHSFHFCCIAANVQHGNR----ICPI 45
C IC+ L G + T +CSH+FH C+ A +GN+ CP
Sbjct: 28 CIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPS 87
Query: 46 CR 47
C+
Sbjct: 88 CK 89
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 23 CSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQAPG 59
C+H+FHF CI+ ++ ++CP+ EW+ FQ G
Sbjct: 75 CNHAFHFHCISRWLK-TRQVCPLDNREWE---FQKYG 107
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 23 CSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQAPG 59
C+H+FHF CI+ ++ ++CP+ EW+ FQ G
Sbjct: 73 CNHAFHFHCISRWLK-TRQVCPLDNREWE---FQKYG 105
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 23 CSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQAPG 59
C+H+FHF CI+ ++ ++CP+ EW+ FQ G
Sbjct: 67 CNHAFHFHCISRWLK-TRQVCPLDNREWE---FQKYG 99
>pdb|2GV5|A Chain A, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|B Chain B, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|D Chain D, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|E Chain E, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|A Chain A, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|B Chain B, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|C Chain C, Crystal Structure Of Sfi1pCDC31P COMPLEX
Length = 161
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 23/141 (16%)
Query: 390 SIPSGRYNSEVLDEGQQAVIDIGNLYADEEKEFMVYLSIPVS-SAEGEQRP--ECTALLD 446
S+ SG NSE+L+E +Q + + +L+ F+ Y + V+ A G + P E L+D
Sbjct: 7 SLQSGPLNSELLEEQKQEIYEAFSLFDXNNDGFLDYHELKVAXKALGFELPKREILDLID 66
Query: 447 VFCTHKDSASMEIHQ------VEGEKV-------EIRRPEVLSTADK--KVNLQVDRQRS 491
+ DS + + V GEK+ EI+R L D K++++ R+ +
Sbjct: 67 EY----DSEGRHLXKYDDFYIVXGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVA 122
Query: 492 RLLVAETIADAQRMAEVGDLE 512
+ L ET+ D + A + + +
Sbjct: 123 KEL-GETLTDEELRAXIEEFD 142
>pdb|3QP9|A Chain A, The Structure Of A C2-Type Ketoreductase From A Modular
Polyketide Synthase
pdb|3QP9|B Chain B, The Structure Of A C2-Type Ketoreductase From A Modular
Polyketide Synthase
pdb|3QP9|C Chain C, The Structure Of A C2-Type Ketoreductase From A Modular
Polyketide Synthase
pdb|3QP9|D Chain D, The Structure Of A C2-Type Ketoreductase From A Modular
Polyketide Synthase
Length = 525
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 136 FGAVAAAECPPKFAVLLRVCAPSLPNDADRAPIDLVTVLDVSGS 179
G VAA E P ++ L+ LP+DADRA +D +T + G+
Sbjct: 178 MGRVAALEHPERWGGLI-----DLPSDADRAALDRMTTVLAGGT 216
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 3 CPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICR 47
C +C+ Q + + C+H FH C+ ++ NR CPICR
Sbjct: 26 CVVCMCDFESRQLLRVLP--CNHEFHAKCVDKWLK-ANRTCPICR 67
>pdb|1ZOV|A Chain A, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
pdb|1ZOV|B Chain B, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
Length = 386
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 555 MDLYERTGRAYLLSGLSSHSWQRATTRGDTTQILATNGDRGHSGSIDS 602
+DL+ + + +G S H ++ ++ G+T LAT G H SI S
Sbjct: 327 IDLHPKYSNVAIAAGFSGHGFKFSSVVGETLAQLATTGKTEHDISIFS 374
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,934,655
Number of Sequences: 62578
Number of extensions: 660638
Number of successful extensions: 1523
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1505
Number of HSP's gapped (non-prelim): 49
length of query: 634
length of database: 14,973,337
effective HSP length: 105
effective length of query: 529
effective length of database: 8,402,647
effective search space: 4445000263
effective search space used: 4445000263
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)