Query 043643
Match_columns 634
No_of_seqs 803 out of 3470
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 06:55:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043643.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043643hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03788 marine_srt_targ mari 99.9 2.9E-24 6.2E-29 244.2 31.0 232 148-426 252-485 (596)
2 cd01466 vWA_C3HC4_type VWA C3H 99.9 2.8E-25 6.1E-30 209.3 18.3 154 168-351 1-155 (155)
3 cd01465 vWA_subgroup VWA subgr 99.9 4E-24 8.7E-29 204.1 20.3 169 168-360 1-170 (170)
4 cd01463 vWA_VGCC_like VWA Volt 99.9 6E-24 1.3E-28 207.2 19.7 167 163-353 9-189 (190)
5 cd01470 vWA_complement_factors 99.9 1.7E-23 3.7E-28 205.4 18.3 180 168-360 1-197 (198)
6 PRK13685 hypothetical protein; 99.9 6.3E-23 1.4E-27 216.3 20.3 179 163-365 84-288 (326)
7 TIGR00868 hCaCC calcium-activa 99.9 1.3E-22 2.8E-27 231.3 23.3 185 162-377 299-490 (863)
8 cd01461 vWA_interalpha_trypsin 99.9 1.9E-22 4.2E-27 192.6 20.7 166 167-360 2-169 (171)
9 PF13768 VWA_3: von Willebrand 99.9 1.9E-22 4.2E-27 189.9 16.6 151 169-349 2-155 (155)
10 cd01456 vWA_ywmD_type VWA ywmD 99.9 4.5E-22 9.7E-27 196.5 16.7 169 161-354 14-204 (206)
11 cd01451 vWA_Magnesium_chelatas 99.9 8.6E-21 1.9E-25 183.0 19.5 166 170-363 3-175 (178)
12 cd01480 vWA_collagen_alpha_1-V 99.9 3.2E-21 6.9E-26 187.3 15.6 163 167-356 2-175 (186)
13 TIGR03436 acidobact_VWFA VWFA- 99.9 2.8E-20 6.1E-25 194.1 23.3 175 165-369 51-256 (296)
14 cd01453 vWA_transcription_fact 99.9 7.9E-21 1.7E-25 183.7 16.6 164 168-363 4-178 (183)
15 cd01474 vWA_ATR ATR (Anthrax T 99.9 3.3E-20 7.2E-25 180.0 20.4 178 165-368 2-182 (185)
16 cd01467 vWA_BatA_type VWA BatA 99.8 5.5E-20 1.2E-24 177.5 17.5 158 167-356 2-180 (180)
17 cd01472 vWA_collagen von Wille 99.8 5.7E-20 1.2E-24 174.7 15.8 152 168-350 1-160 (164)
18 cd01464 vWA_subfamily VWA subf 99.8 1.6E-19 3.5E-24 173.8 15.6 144 167-342 3-160 (176)
19 PF13519 VWA_2: von Willebrand 99.8 1.1E-19 2.3E-24 172.9 14.0 160 169-363 1-172 (172)
20 cd01477 vWA_F09G8-8_type VWA F 99.8 5.9E-19 1.3E-23 171.6 17.4 159 164-349 16-191 (193)
21 cd01471 vWA_micronemal_protein 99.8 7.8E-19 1.7E-23 170.5 17.0 168 168-361 1-183 (186)
22 cd01475 vWA_Matrilin VWA_Matri 99.8 1E-18 2.2E-23 174.9 17.2 173 166-369 1-185 (224)
23 cd01469 vWA_integrins_alpha_su 99.8 3.7E-18 8E-23 164.5 17.3 162 168-357 1-175 (177)
24 PRK13406 bchD magnesium chelat 99.8 8.3E-18 1.8E-22 187.9 21.0 172 162-354 396-571 (584)
25 cd01473 vWA_CTRP CTRP for CS 99.8 1.2E-17 2.6E-22 162.7 17.3 175 168-367 1-190 (192)
26 PTZ00441 sporozoite surface pr 99.8 1.8E-17 3.8E-22 180.2 19.6 188 162-375 37-238 (576)
27 cd01482 vWA_collagen_alphaI-XI 99.8 1.2E-17 2.7E-22 158.8 15.9 154 168-352 1-163 (164)
28 COG1240 ChlD Mg-chelatase subu 99.7 6.2E-17 1.3E-21 158.3 18.3 171 162-356 73-250 (261)
29 cd01476 VWA_integrin_invertebr 99.7 5.3E-17 1.1E-21 154.0 16.6 151 168-347 1-161 (163)
30 cd01455 vWA_F11C1-5a_type Von 99.7 8E-17 1.7E-21 153.5 17.0 165 169-366 2-188 (191)
31 cd01450 vWFA_subfamily_ECM Von 99.7 3.6E-17 7.9E-22 153.9 14.4 152 168-348 1-160 (161)
32 TIGR02031 BchD-ChlD magnesium 99.7 8.5E-17 1.9E-21 181.5 18.7 177 163-354 403-584 (589)
33 PF14624 Vwaint: VWA / Hh pro 99.7 1.4E-18 3E-23 141.9 2.6 52 535-586 1-53 (80)
34 cd01454 vWA_norD_type norD typ 99.7 2.8E-16 6.1E-21 150.9 16.7 146 169-332 2-155 (174)
35 PF00092 VWA: von Willebrand f 99.7 4E-16 8.7E-21 149.4 14.3 166 169-362 1-177 (178)
36 cd01462 VWA_YIEM_type VWA YIEM 99.7 8E-16 1.7E-20 144.3 15.7 144 169-342 2-147 (152)
37 smart00327 VWA von Willebrand 99.7 1.4E-15 3E-20 145.2 17.0 155 167-349 1-164 (177)
38 TIGR02442 Cob-chelat-sub cobal 99.6 5.4E-15 1.2E-19 168.8 19.5 167 161-351 459-633 (633)
39 cd01481 vWA_collagen_alpha3-VI 99.6 6.7E-15 1.4E-19 140.0 16.2 152 169-352 2-164 (165)
40 cd00198 vWFA Von Willebrand fa 99.6 3.9E-14 8.4E-19 132.0 16.9 153 168-347 1-160 (161)
41 PLN00162 transport protein sec 99.6 6.4E-12 1.4E-16 145.6 35.9 293 163-465 120-500 (761)
42 COG4245 TerY Uncharacterized p 99.5 1.1E-13 2.3E-18 128.3 14.2 143 168-342 4-161 (207)
43 cd01452 VWA_26S_proteasome_sub 99.5 3.1E-13 6.7E-18 129.8 16.8 154 170-354 6-176 (187)
44 KOG1985 Vesicle coat complex C 99.5 2.7E-12 5.9E-17 141.6 26.1 297 149-465 276-613 (887)
45 cd01457 vWA_ORF176_type VWA OR 99.5 2.8E-13 6.2E-18 133.0 15.8 149 167-342 2-165 (199)
46 PTZ00395 Sec24-related protein 99.5 9.2E-12 2E-16 143.8 29.2 287 162-470 947-1292(1560)
47 KOG2353 L-type voltage-depende 99.4 2.5E-12 5.4E-17 150.3 16.7 175 161-362 219-407 (1104)
48 KOG1984 Vesicle coat complex C 99.4 1E-10 2.2E-15 129.6 23.1 286 163-466 413-739 (1007)
49 PF10138 vWA-TerF-like: vWA fo 99.3 2.9E-11 6.2E-16 116.0 16.3 158 169-356 3-174 (200)
50 cd01460 vWA_midasin VWA_Midasi 99.3 4.7E-11 1E-15 120.8 18.2 186 146-368 45-260 (266)
51 cd01458 vWA_ku Ku70/Ku80 N-ter 99.3 6.7E-11 1.4E-15 117.9 13.6 143 169-331 3-174 (218)
52 PF13639 zf-RING_2: Ring finge 99.2 9.4E-12 2E-16 90.9 2.0 44 1-47 1-44 (44)
53 COG5028 Vesicle coat complex C 99.1 2.7E-08 5.9E-13 109.7 27.4 288 149-464 258-588 (861)
54 cd01479 Sec24-like Sec24-like: 99.1 5.1E-09 1.1E-13 105.9 17.5 180 166-351 2-219 (244)
55 PRK10997 yieM hypothetical pro 99.1 3.4E-09 7.3E-14 115.3 16.3 146 164-340 320-467 (487)
56 PF12861 zf-Apc11: Anaphase-pr 99.0 1.7E-10 3.6E-15 94.3 3.3 52 1-52 22-83 (85)
57 cd01468 trunk_domain trunk dom 99.0 7.4E-09 1.6E-13 104.6 16.0 185 166-353 2-224 (239)
58 KOG4628 Predicted E3 ubiquitin 99.0 4.5E-10 9.7E-15 115.9 6.5 49 1-51 230-278 (348)
59 COG2425 Uncharacterized protei 99.0 3.4E-09 7.5E-14 113.1 12.0 144 169-343 274-419 (437)
60 PF12678 zf-rbx1: RING-H2 zinc 99.0 4.1E-10 8.9E-15 91.5 3.3 46 1-47 20-73 (73)
61 PF15227 zf-C3HC4_4: zinc fing 98.9 8.4E-10 1.8E-14 79.3 3.2 39 3-46 1-42 (42)
62 PF04811 Sec23_trunk: Sec23/Se 98.9 1.2E-08 2.7E-13 103.3 12.6 185 166-354 2-227 (243)
63 cd01478 Sec23-like Sec23-like: 98.9 1.5E-07 3.4E-12 96.2 19.6 193 166-364 2-265 (267)
64 COG2304 Uncharacterized protei 98.8 9.1E-08 2E-12 104.0 17.2 177 161-361 31-209 (399)
65 KOG2930 SCF ubiquitin ligase, 98.8 2.1E-09 4.6E-14 89.3 2.1 51 1-52 47-109 (114)
66 PF04056 Ssl1: Ssl1-like; Int 98.8 7.2E-08 1.6E-12 92.8 12.5 159 173-363 1-172 (193)
67 COG5194 APC11 Component of SCF 98.8 4.1E-09 8.9E-14 83.4 3.1 51 1-52 21-82 (88)
68 PHA02929 N1R/p28-like protein; 98.7 5.9E-09 1.3E-13 103.2 3.5 51 1-52 175-228 (238)
69 PHA02926 zinc finger-like prot 98.7 7.2E-09 1.6E-13 98.9 3.4 53 1-53 171-232 (242)
70 PF05762 VWA_CoxE: VWA domain 98.7 6.5E-08 1.4E-12 96.6 10.2 109 163-278 53-163 (222)
71 KOG1986 Vesicle coat complex C 98.7 4.3E-05 9.3E-10 84.4 32.2 285 167-463 121-482 (745)
72 PLN03208 E3 ubiquitin-protein 98.7 9.4E-09 2E-13 97.5 3.5 46 2-52 20-80 (193)
73 KOG3768 DEAD box RNA helicase 98.7 6.3E-07 1.4E-11 96.0 17.1 201 170-383 4-240 (888)
74 PF13923 zf-C3HC4_2: Zinc fing 98.6 1.7E-08 3.7E-13 71.5 2.9 38 3-46 1-39 (39)
75 PF11775 CobT_C: Cobalamin bio 98.6 9.1E-07 2E-11 85.8 15.5 178 166-368 11-217 (219)
76 cd00162 RING RING-finger (Real 98.6 4.7E-08 1E-12 71.0 3.4 45 2-50 1-45 (45)
77 KOG0823 Predicted E3 ubiquitin 98.6 3.1E-08 6.7E-13 95.5 2.7 46 2-52 49-96 (230)
78 PF00097 zf-C3HC4: Zinc finger 98.5 5.1E-08 1.1E-12 69.9 3.1 39 3-46 1-41 (41)
79 KOG1493 Anaphase-promoting com 98.5 9.9E-09 2.1E-13 80.5 -1.0 52 1-52 21-82 (84)
80 PF13920 zf-C3HC4_3: Zinc fing 98.5 6.4E-08 1.4E-12 72.6 3.2 46 1-52 3-49 (50)
81 COG4867 Uncharacterized protei 98.5 1.8E-06 3.9E-11 89.4 14.7 168 163-359 459-641 (652)
82 COG5243 HRD1 HRD ubiquitin lig 98.5 1.6E-07 3.4E-12 95.4 6.8 48 1-49 288-343 (491)
83 PF06707 DUF1194: Protein of u 98.4 2E-05 4.3E-10 76.3 18.7 172 167-363 3-197 (205)
84 smart00504 Ubox Modified RING 98.4 2.2E-07 4.7E-12 73.3 3.6 44 2-51 3-46 (63)
85 COG4548 NorD Nitric oxide redu 98.4 7E-07 1.5E-11 95.3 8.3 178 168-368 447-636 (637)
86 PF09967 DUF2201: VWA-like dom 98.4 2.4E-06 5.3E-11 77.3 10.1 92 170-277 1-95 (126)
87 PF14634 zf-RING_5: zinc-RING 98.4 2.9E-07 6.2E-12 67.1 3.1 44 2-48 1-44 (44)
88 KOG2807 RNA polymerase II tran 98.4 4.6E-06 1E-10 83.8 12.6 165 167-363 60-235 (378)
89 smart00184 RING Ring finger. E 98.3 3.1E-07 6.7E-12 64.3 2.9 39 3-46 1-39 (39)
90 TIGR00599 rad18 DNA repair pro 98.3 3E-07 6.5E-12 97.7 3.6 46 2-53 28-73 (397)
91 TIGR01651 CobT cobaltochelatas 98.3 1.7E-05 3.6E-10 87.3 16.4 181 163-368 388-597 (600)
92 KOG0287 Postreplication repair 98.3 2.6E-07 5.7E-12 92.8 1.5 49 2-56 25-73 (442)
93 PF13445 zf-RING_UBOX: RING-ty 98.3 4.7E-07 1E-11 65.1 2.3 40 3-44 1-43 (43)
94 smart00187 INB Integrin beta s 98.3 0.00024 5.3E-09 75.8 23.4 247 163-430 95-392 (423)
95 KOG2884 26S proteasome regulat 98.2 4.8E-05 1E-09 72.6 15.7 135 169-332 5-149 (259)
96 COG5432 RAD18 RING-finger-cont 98.2 3.8E-07 8.2E-12 89.8 1.5 49 2-56 27-75 (391)
97 KOG0311 Predicted E3 ubiquitin 98.2 1.5E-07 3.2E-12 95.7 -2.3 65 2-78 45-109 (381)
98 KOG2164 Predicted E3 ubiquitin 98.1 1.1E-06 2.3E-11 93.9 2.5 46 2-52 188-237 (513)
99 KOG0802 E3 ubiquitin ligase [P 98.1 1E-06 2.2E-11 99.5 1.8 50 1-51 292-341 (543)
100 cd01459 vWA_copine_like VWA Co 98.1 0.00013 2.9E-09 73.7 16.2 132 183-341 63-206 (254)
101 TIGR00570 cdk7 CDK-activating 98.1 2.9E-06 6.2E-11 86.6 4.0 52 2-53 5-56 (309)
102 PF04564 U-box: U-box domain; 98.0 3.6E-06 7.8E-11 68.5 3.1 47 2-53 6-52 (73)
103 KOG0804 Cytoplasmic Zn-finger 98.0 2E-06 4.4E-11 89.9 1.3 44 2-49 177-220 (493)
104 KOG1734 Predicted RING-contain 97.9 3.2E-06 6.9E-11 82.7 0.1 51 2-52 226-282 (328)
105 PRK05325 hypothetical protein; 97.9 0.0004 8.7E-09 74.1 15.7 165 164-365 219-395 (401)
106 KOG0824 Predicted E3 ubiquitin 97.8 6.1E-06 1.3E-10 82.4 1.6 53 1-58 8-60 (324)
107 TIGR00627 tfb4 transcription f 97.8 0.00072 1.6E-08 69.2 15.4 169 168-360 3-217 (279)
108 PF03731 Ku_N: Ku70/Ku80 N-ter 97.7 0.00019 4.1E-09 71.8 9.7 106 170-278 2-142 (224)
109 KOG2177 Predicted E3 ubiquitin 97.7 1.5E-05 3.3E-10 83.1 1.6 40 2-47 15-54 (386)
110 PF14835 zf-RING_6: zf-RING of 97.7 1.2E-05 2.5E-10 62.0 0.5 45 2-54 9-54 (65)
111 PF00362 Integrin_beta: Integr 97.7 0.0021 4.5E-08 70.1 17.7 265 125-430 76-395 (426)
112 PF04285 DUF444: Protein of un 97.6 0.0016 3.4E-08 70.1 16.1 165 165-366 244-418 (421)
113 TIGR02877 spore_yhbH sporulati 97.6 0.0017 3.8E-08 68.1 15.0 102 164-278 199-305 (371)
114 COG3552 CoxE Protein containin 97.5 0.00022 4.8E-09 73.8 7.3 111 164-280 215-327 (395)
115 KOG4172 Predicted E3 ubiquitin 97.5 1.5E-05 3.2E-10 58.7 -1.1 47 1-52 8-55 (62)
116 COG5148 RPN10 26S proteasome r 97.4 0.0032 6.8E-08 59.0 13.0 139 169-336 5-153 (243)
117 PF12034 DUF3520: Domain of un 97.4 0.00023 4.9E-09 67.6 5.7 93 367-462 2-108 (183)
118 KOG0827 Predicted E3 ubiquitin 97.4 6.6E-05 1.4E-09 77.3 1.7 47 2-49 6-54 (465)
119 PF03850 Tfb4: Transcription f 97.4 0.0073 1.6E-07 62.0 16.7 167 169-360 3-215 (276)
120 KOG1645 RING-finger-containing 97.4 9.7E-05 2.1E-09 76.7 2.9 48 2-49 6-54 (463)
121 smart00744 RINGv The RING-vari 97.4 0.00016 3.4E-09 53.8 3.1 43 2-47 1-49 (49)
122 PF11793 FANCL_C: FANCL C-term 97.3 5.6E-05 1.2E-09 60.8 0.3 50 2-51 4-66 (70)
123 PF11443 DUF2828: Domain of un 97.3 0.002 4.3E-08 71.4 11.8 106 168-278 341-450 (534)
124 COG5242 TFB4 RNA polymerase II 97.3 0.028 6E-07 54.3 17.5 172 166-363 19-225 (296)
125 KOG0825 PHD Zn-finger protein 97.2 8.5E-05 1.8E-09 82.4 0.2 52 2-56 125-176 (1134)
126 TIGR00578 ku70 ATP-dependent D 97.2 0.0067 1.5E-07 69.1 15.2 111 169-279 12-153 (584)
127 KOG1039 Predicted E3 ubiquitin 97.2 0.00017 3.7E-09 75.4 2.2 51 1-51 162-221 (344)
128 COG4547 CobT Cobalamin biosynt 97.2 0.0024 5.1E-08 67.6 10.2 174 170-367 416-617 (620)
129 KOG4159 Predicted E3 ubiquitin 97.0 0.0003 6.5E-09 75.2 1.9 49 2-56 86-134 (398)
130 COG5574 PEX10 RING-finger-cont 96.8 0.0005 1.1E-08 68.0 1.7 35 17-51 227-262 (271)
131 COG5152 Uncharacterized conser 96.7 0.00047 1E-08 64.7 0.8 42 2-49 198-239 (259)
132 KOG1327 Copine [Signal transdu 96.7 0.034 7.4E-07 61.1 14.4 151 166-343 284-465 (529)
133 KOG4445 Uncharacterized conser 96.6 0.0005 1.1E-08 68.7 0.2 50 1-52 116-187 (368)
134 COG5047 SEC23 Vesicle coat com 96.6 0.29 6.2E-06 53.8 20.8 288 166-462 121-492 (755)
135 PF11789 zf-Nse: Zinc-finger o 96.6 0.0011 2.3E-08 51.0 1.9 39 2-45 13-53 (57)
136 KOG1002 Nucleotide excision re 96.5 0.00075 1.6E-08 72.1 0.8 44 2-50 538-585 (791)
137 PF14570 zf-RING_4: RING/Ubox 96.5 0.0018 4E-08 47.4 2.4 47 3-50 1-47 (48)
138 PF11265 Med25_VWA: Mediator c 96.5 0.043 9.3E-07 54.2 12.6 111 163-277 9-151 (226)
139 KOG1785 Tyrosine kinase negati 96.5 0.00098 2.1E-08 68.9 1.1 47 2-53 371-418 (563)
140 PF07002 Copine: Copine; Inte 96.5 0.03 6.4E-07 52.0 10.6 120 183-328 12-146 (146)
141 COG2718 Uncharacterized conser 96.4 0.088 1.9E-06 55.1 14.6 104 163-279 242-350 (423)
142 KOG2660 Locus-specific chromos 96.3 0.00086 1.9E-08 68.4 -0.4 50 2-56 17-66 (331)
143 COG5151 SSL1 RNA polymerase II 96.3 0.03 6.6E-07 56.4 10.3 165 167-363 87-266 (421)
144 KOG2487 RNA polymerase II tran 96.1 0.19 4.2E-06 50.1 14.8 170 166-361 22-236 (314)
145 KOG1813 Predicted E3 ubiquitin 96.0 0.0024 5.1E-08 64.1 0.7 42 2-49 243-284 (313)
146 KOG0978 E3 ubiquitin ligase in 95.9 0.0032 7E-08 71.1 1.6 36 19-54 657-692 (698)
147 PF08033 Sec23_BS: Sec23/Sec24 95.9 0.071 1.5E-06 45.7 9.5 89 372-468 1-94 (96)
148 COG3864 Uncharacterized protei 95.9 0.016 3.5E-07 58.7 6.1 91 169-277 263-355 (396)
149 KOG0297 TNF receptor-associate 95.8 0.0036 7.8E-08 67.7 1.3 44 2-51 23-67 (391)
150 KOG1941 Acetylcholine receptor 95.5 0.0053 1.2E-07 63.6 1.1 47 2-49 367-414 (518)
151 KOG1226 Integrin beta subunit 95.3 0.087 1.9E-06 59.8 9.9 110 164-277 129-274 (783)
152 COG5222 Uncharacterized conser 95.1 0.011 2.4E-07 59.2 1.9 43 2-49 276-319 (427)
153 KOG1428 Inhibitor of type V ad 94.8 0.016 3.5E-07 68.5 2.4 54 1-56 3487-3549(3738)
154 PHA03096 p28-like protein; Pro 94.6 0.017 3.6E-07 59.4 1.7 49 1-49 179-232 (284)
155 COG5175 MOT2 Transcriptional r 94.2 0.024 5.3E-07 57.7 1.9 53 1-54 15-67 (480)
156 KOG4185 Predicted E3 ubiquitin 94.1 0.03 6.6E-07 58.4 2.6 49 2-50 5-54 (296)
157 PF05883 Baculo_RING: Baculovi 93.9 0.025 5.5E-07 50.8 1.2 34 2-37 28-67 (134)
158 PF04641 Rtf2: Rtf2 RING-finge 93.8 0.056 1.2E-06 55.3 3.7 51 2-55 115-165 (260)
159 KOG2114 Vacuolar assembly/sort 93.6 0.028 6E-07 64.1 1.2 40 2-49 842-881 (933)
160 PHA02862 5L protein; Provision 93.5 0.044 9.6E-07 49.4 2.0 50 1-56 3-58 (156)
161 KOG3039 Uncharacterized conser 93.5 0.068 1.5E-06 52.4 3.4 53 2-56 223-275 (303)
162 KOG1952 Transcription factor N 93.4 0.035 7.5E-07 63.2 1.5 52 2-55 193-251 (950)
163 KOG3970 Predicted E3 ubiquitin 93.2 0.058 1.3E-06 52.0 2.4 46 2-50 52-104 (299)
164 COG1721 Uncharacterized conser 93.1 0.59 1.3E-05 51.3 10.6 75 167-242 224-305 (416)
165 KOG2034 Vacuolar sorting prote 92.9 0.045 9.7E-07 62.9 1.5 33 1-36 818-850 (911)
166 PF12906 RINGv: RING-variant d 92.9 0.08 1.7E-06 39.0 2.3 41 3-46 1-47 (47)
167 PHA02825 LAP/PHD finger-like p 92.8 0.078 1.7E-06 48.9 2.6 50 1-54 9-62 (162)
168 KOG3800 Predicted E3 ubiquitin 92.7 0.095 2.1E-06 52.9 3.3 56 1-56 1-56 (300)
169 KOG4692 Predicted E3 ubiquitin 92.6 0.065 1.4E-06 55.0 1.9 46 1-52 423-468 (489)
170 KOG1940 Zn-finger protein [Gen 92.1 0.082 1.8E-06 53.7 2.1 45 2-48 160-204 (276)
171 KOG1001 Helicase-like transcri 92.0 0.053 1.2E-06 62.4 0.6 49 2-56 456-505 (674)
172 PF07800 DUF1644: Protein of u 91.9 0.14 3E-06 47.2 3.0 34 2-37 4-47 (162)
173 COG5236 Uncharacterized conser 91.9 0.1 2.2E-06 53.5 2.4 51 2-57 63-114 (493)
174 KOG4739 Uncharacterized protei 91.7 0.065 1.4E-06 52.9 0.7 48 3-56 6-53 (233)
175 KOG4465 Uncharacterized conser 91.1 0.5 1.1E-05 49.0 6.4 112 161-282 421-537 (598)
176 KOG1814 Predicted E3 ubiquitin 90.1 0.21 4.5E-06 52.8 2.7 46 2-49 186-238 (445)
177 PF08746 zf-RING-like: RING-li 89.9 0.18 3.9E-06 36.3 1.5 42 3-46 1-43 (43)
178 PF14447 Prok-RING_4: Prokaryo 89.7 0.15 3.3E-06 38.4 1.0 31 18-51 20-50 (55)
179 COG5220 TFB3 Cdk activating ki 88.9 0.15 3.2E-06 49.8 0.6 57 2-58 12-71 (314)
180 KOG2817 Predicted E3 ubiquitin 88.6 0.29 6.3E-06 51.7 2.5 46 2-49 336-383 (394)
181 KOG4362 Transcriptional regula 87.9 0.14 3.1E-06 57.9 -0.3 43 2-49 23-67 (684)
182 KOG4849 mRNA cleavage factor I 86.8 1.2 2.6E-05 46.1 5.5 63 489-553 367-429 (498)
183 KOG3161 Predicted E3 ubiquitin 86.8 0.25 5.5E-06 54.7 0.8 48 2-53 13-60 (861)
184 KOG0298 DEAD box-containing he 86.7 0.24 5.1E-06 59.3 0.6 43 2-49 1155-1197(1394)
185 PF14569 zf-UDP: Zinc-binding 86.0 0.77 1.7E-05 37.1 2.9 51 2-52 11-63 (80)
186 KOG2879 Predicted E3 ubiquitin 84.8 0.6 1.3E-05 46.9 2.2 30 21-50 256-286 (298)
187 KOG3053 Uncharacterized conser 84.5 0.33 7.1E-06 48.1 0.3 49 2-51 22-82 (293)
188 PF05290 Baculo_IE-1: Baculovi 82.5 0.95 2.1E-05 40.5 2.3 51 2-53 82-134 (140)
189 PF03854 zf-P11: P-11 zinc fin 82.0 0.91 2E-05 33.0 1.6 40 3-50 5-45 (50)
190 KOG4265 Predicted E3 ubiquitin 81.8 0.89 1.9E-05 47.5 2.2 35 18-53 303-338 (349)
191 KOG3579 Predicted E3 ubiquitin 80.7 0.67 1.5E-05 46.5 0.8 31 2-37 270-304 (352)
192 KOG3899 Uncharacterized conser 80.5 0.87 1.9E-05 45.9 1.5 30 23-52 325-366 (381)
193 KOG1812 Predicted E3 ubiquitin 80.2 0.92 2E-05 49.1 1.8 45 1-46 307-351 (384)
194 KOG2932 E3 ubiquitin ligase in 79.8 0.96 2.1E-05 46.0 1.6 29 20-51 106-134 (389)
195 KOG3002 Zn finger protein [Gen 78.6 1.4 2.9E-05 45.9 2.3 42 2-51 50-91 (299)
196 KOG1812 Predicted E3 ubiquitin 78.5 0.93 2E-05 49.0 1.2 35 2-37 148-182 (384)
197 PLN02189 cellulose synthase 78.5 1.7 3.7E-05 51.8 3.4 50 2-51 36-87 (1040)
198 PF02891 zf-MIZ: MIZ/SP-RING z 78.3 2 4.3E-05 32.0 2.5 44 2-49 4-50 (50)
199 KOG0825 PHD Zn-finger protein 78.2 1.1 2.4E-05 50.9 1.6 52 1-52 97-155 (1134)
200 PF06906 DUF1272: Protein of u 78.1 3.5 7.6E-05 31.2 3.7 48 2-54 7-55 (57)
201 KOG4367 Predicted Zn-finger pr 76.5 1 2.2E-05 47.8 0.6 30 2-36 6-35 (699)
202 COG5183 SSM4 Protein involved 75.7 1.6 3.5E-05 49.8 2.1 53 2-57 14-72 (1175)
203 KOG3268 Predicted E3 ubiquitin 75.7 1.7 3.8E-05 40.6 1.9 37 2-38 167-205 (234)
204 KOG0827 Predicted E3 ubiquitin 74.9 0.25 5.4E-06 51.7 -4.2 52 2-55 198-249 (465)
205 PLN02436 cellulose synthase A 73.8 2.7 5.9E-05 50.2 3.3 50 2-51 38-89 (1094)
206 PF14446 Prok-RING_1: Prokaryo 70.4 3.8 8.3E-05 30.9 2.3 32 2-34 7-38 (54)
207 COG5109 Uncharacterized conser 67.8 3.3 7.2E-05 42.4 2.0 46 2-49 338-385 (396)
208 PLN02638 cellulose synthase A 67.4 4.4 9.6E-05 48.7 3.2 50 2-51 19-70 (1079)
209 smart00249 PHD PHD zinc finger 64.1 2.9 6.4E-05 29.7 0.6 31 2-34 1-31 (47)
210 PLN02195 cellulose synthase A 63.7 6.1 0.00013 47.1 3.4 51 2-52 8-60 (977)
211 KOG3039 Uncharacterized conser 62.7 4.5 9.7E-05 40.1 1.8 31 1-36 44-74 (303)
212 PF10571 UPF0547: Uncharacteri 62.4 4.2 9E-05 25.9 1.0 24 1-27 1-24 (26)
213 PLN02400 cellulose synthase 61.7 5.1 0.00011 48.2 2.3 51 2-52 38-90 (1085)
214 smart00647 IBR In Between Ring 60.6 4 8.7E-05 31.5 0.9 34 3-36 21-59 (64)
215 PLN02915 cellulose synthase A 59.1 7.5 0.00016 46.6 3.1 51 2-52 17-69 (1044)
216 COG3813 Uncharacterized protei 59.0 9.5 0.00021 30.3 2.6 50 2-56 7-57 (84)
217 KOG1609 Protein involved in mR 58.3 4.7 0.0001 42.2 1.2 50 2-52 80-135 (323)
218 KOG1829 Uncharacterized conser 57.0 3.3 7.1E-05 46.7 -0.2 27 20-50 534-560 (580)
219 KOG0824 Predicted E3 ubiquitin 53.5 12 0.00026 38.4 3.0 47 1-52 106-152 (324)
220 PF06844 DUF1244: Protein of u 53.1 7.4 0.00016 30.5 1.2 12 26-37 11-22 (68)
221 COG3357 Predicted transcriptio 50.0 5.4 0.00012 33.3 0.0 34 18-56 59-92 (97)
222 KOG0269 WD40 repeat-containing 49.8 16 0.00035 42.0 3.7 44 2-49 781-826 (839)
223 KOG3113 Uncharacterized conser 49.6 14 0.00031 36.8 2.9 48 3-54 114-161 (293)
224 KOG2327 DNA-binding subunit of 49.2 1.3E+02 0.0027 34.2 10.3 109 169-277 20-157 (602)
225 KOG2068 MOT2 transcription fac 49.1 11 0.00024 39.3 2.1 46 2-49 251-296 (327)
226 KOG1815 Predicted E3 ubiquitin 48.9 9.5 0.00021 42.2 1.7 32 2-37 72-103 (444)
227 PRK09591 celC cellobiose phosp 46.6 66 0.0014 28.0 6.2 30 498-527 23-52 (104)
228 PF00628 PHD: PHD-finger; Int 46.2 12 0.00027 27.4 1.5 45 2-48 1-50 (51)
229 COG1447 CelC Phosphotransferas 46.0 49 0.0011 28.8 5.2 29 499-527 23-51 (105)
230 PF10633 NPCBM_assoc: NPCBM-as 45.0 92 0.002 25.1 6.6 38 409-452 41-78 (78)
231 KOG3799 Rab3 effector RIM1 and 44.4 4.9 0.00011 36.0 -1.1 46 2-49 67-116 (169)
232 cd00215 PTS_IIA_lac PTS_IIA, P 44.3 81 0.0018 27.0 6.3 30 498-527 18-47 (97)
233 PF01485 IBR: IBR domain; Int 44.2 3.6 7.8E-05 31.7 -1.8 33 3-35 21-58 (64)
234 KOG2326 DNA-binding subunit of 44.0 3.9E+02 0.0085 30.5 12.9 44 170-213 7-61 (669)
235 COG5271 MDN1 AAA ATPase contai 43.7 3.4E+02 0.0073 35.7 13.1 108 167-277 4392-4508(4600)
236 PF06937 EURL: EURL protein; 43.6 15 0.00032 37.1 1.9 43 3-45 33-75 (285)
237 PF05605 zf-Di19: Drought indu 43.2 9.4 0.0002 28.8 0.4 36 2-49 4-40 (54)
238 TIGR00823 EIIA-LAC phosphotran 42.2 90 0.002 26.9 6.3 30 498-527 20-49 (99)
239 smart00745 MIT Microtubule Int 42.2 1.8E+02 0.0038 23.3 8.8 60 494-553 7-66 (77)
240 PF07975 C1_4: TFIIH C1-like d 42.0 19 0.00041 27.0 1.8 44 3-47 2-50 (51)
241 KOG2066 Vacuolar assembly/sort 40.6 11 0.00023 43.6 0.5 45 2-48 786-832 (846)
242 PRK10454 PTS system N,N'-diace 40.2 63 0.0014 28.6 5.2 30 498-527 34-63 (115)
243 PF07191 zinc-ribbons_6: zinc- 38.8 5 0.00011 32.0 -1.7 40 2-52 3-42 (70)
244 KOG1815 Predicted E3 ubiquitin 38.2 12 0.00025 41.5 0.3 40 2-41 228-270 (444)
245 KOG4185 Predicted E3 ubiquitin 36.4 7.1 0.00015 40.6 -1.6 48 2-49 209-265 (296)
246 PF02318 FYVE_2: FYVE-type zin 34.9 23 0.00049 31.5 1.6 47 2-48 56-102 (118)
247 smart00132 LIM Zinc-binding do 34.6 29 0.00063 23.3 1.8 37 2-50 1-37 (39)
248 KOG4443 Putative transcription 34.3 21 0.00046 40.5 1.5 34 15-48 33-70 (694)
249 KOG4218 Nuclear hormone recept 33.8 11 0.00024 39.2 -0.7 48 2-49 17-76 (475)
250 PF02255 PTS_IIA: PTS system, 33.3 1.6E+02 0.0034 25.2 6.4 30 498-527 17-46 (96)
251 PF04212 MIT: MIT (microtubule 31.6 2.5E+02 0.0055 21.9 9.1 58 494-551 4-61 (69)
252 KOG2231 Predicted E3 ubiquitin 31.5 41 0.0009 38.7 3.3 53 1-58 1-59 (669)
253 PF01882 DUF58: Protein of unk 31.5 63 0.0014 26.4 3.7 40 166-205 39-85 (86)
254 COG3492 Uncharacterized protei 31.3 22 0.00048 29.6 0.8 12 26-37 42-53 (104)
255 KOG3005 GIY-YIG type nuclease 30.5 28 0.00061 35.2 1.5 48 2-49 184-241 (276)
256 PF10497 zf-4CXXC_R1: Zinc-fin 29.4 53 0.0011 28.6 2.9 29 21-49 31-70 (105)
257 TIGR02300 FYDLN_acid conserved 29.3 35 0.00075 30.6 1.7 17 40-56 26-42 (129)
258 PF08496 Peptidase_S49_N: Pept 27.9 1.1E+02 0.0023 28.7 4.9 40 167-206 96-136 (155)
259 KOG1185 Thiamine pyrophosphate 27.8 8.3E+02 0.018 27.4 12.0 40 336-375 518-557 (571)
260 KOG0956 PHD finger protein AF1 27.7 29 0.00063 39.5 1.2 54 1-54 118-185 (900)
261 PF13717 zinc_ribbon_4: zinc-r 27.7 45 0.00097 22.9 1.7 9 3-11 5-13 (36)
262 cd02679 MIT_spastin MIT: domai 27.7 2.3E+02 0.0049 23.3 6.2 36 494-529 7-42 (79)
263 TIGR00622 ssl1 transcription f 27.5 56 0.0012 28.8 2.7 46 2-48 57-111 (112)
264 KOG2789 Putative Zn-finger pro 27.5 32 0.00069 36.7 1.4 52 2-56 76-150 (482)
265 PF04710 Pellino: Pellino; In 27.3 21 0.00045 38.2 0.0 34 16-52 302-340 (416)
266 KOG0802 E3 ubiquitin ligase [P 26.6 30 0.00065 39.4 1.1 44 1-54 480-523 (543)
267 COG4647 AcxC Acetone carboxyla 26.2 33 0.00071 30.6 1.0 12 18-29 70-81 (165)
268 KOG1701 Focal adhesion adaptor 26.0 9.1 0.0002 41.0 -2.9 42 2-57 336-377 (468)
269 PF07721 TPR_4: Tetratricopept 25.9 1.2E+02 0.0025 18.8 3.3 21 499-519 5-25 (26)
270 PF09538 FYDLN_acid: Protein o 25.2 43 0.00093 29.4 1.6 38 15-58 7-44 (108)
271 PF04216 FdhE: Protein involve 24.4 15 0.00032 38.3 -1.8 44 1-49 173-220 (290)
272 TIGR02921 PEP_integral PEP-CTE 24.3 5.3E+02 0.012 29.5 9.9 28 168-195 637-664 (952)
273 COG4306 Uncharacterized protei 24.2 37 0.00079 30.2 1.0 23 26-52 29-51 (160)
274 TIGR03504 FimV_Cterm FimV C-te 23.6 1.4E+02 0.003 21.6 3.7 23 500-522 4-26 (44)
275 COG0275 Predicted S-adenosylme 23.4 1.1E+02 0.0023 32.0 4.3 30 183-212 219-248 (314)
276 PF10938 YfdX: YfdX protein; 22.8 1.3E+02 0.0029 28.0 4.5 32 495-526 2-33 (155)
277 PF10221 DUF2151: Cell cycle a 22.7 3.6E+02 0.0077 31.7 8.7 83 194-277 60-165 (695)
278 cd01570 NAPRTase_A Nicotinate 22.1 3.6E+02 0.0079 28.5 8.2 93 176-277 189-289 (327)
279 PF13719 zinc_ribbon_5: zinc-r 22.0 65 0.0014 22.2 1.7 9 42-50 27-35 (37)
280 PRK04023 DNA polymerase II lar 21.5 48 0.001 39.8 1.5 41 2-50 628-673 (1121)
281 KOG0826 Predicted E3 ubiquitin 21.3 53 0.0012 34.2 1.6 26 23-49 319-344 (357)
282 KOG4451 Uncharacterized conser 21.2 67 0.0015 31.6 2.2 27 27-54 251-277 (286)
283 KOG4323 Polycomb-like PHD Zn-f 20.9 31 0.00068 37.9 -0.1 55 2-56 170-231 (464)
284 PF14276 DUF4363: Domain of un 20.7 5.3E+02 0.011 22.6 7.8 78 497-574 30-110 (121)
285 PF00412 LIM: LIM domain; Int 20.5 49 0.0011 24.7 1.0 40 3-54 1-40 (58)
No 1
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=99.93 E-value=2.9e-24 Score=244.15 Aligned_cols=232 Identities=25% Similarity=0.332 Sum_probs=187.2
Q ss_pred eEEEEEEeCCCCCCCCCCCCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEEcCc-ccCHH
Q 043643 148 FAVLLRVCAPSLPNDADRAPIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFPLQ-RMTDS 225 (634)
Q Consensus 148 ~~v~v~~~ap~~~~~~~r~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~pl~-~~t~~ 225 (634)
.++++.+.+|.......+.|.+++||||+||||.| +++.+|.++..++..|.++|+|+||.|++.+..++|.. ..+..
T Consensus 252 ~y~~~~~~pp~~~~~~~~~p~~vvfvlD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~ii~F~~~~~~~~~~~~~~~~~ 331 (596)
T TIGR03788 252 RYGLAMVMPPTEAAVAQVLPRELVFVIDTSGSMAGESIEQAKSALLLALDQLRPGDRFNIIQFDSDVTLLFPVPVPATAH 331 (596)
T ss_pred cEEEEEEeCCCccccccCCCceEEEEEECCCCCCCccHHHHHHHHHHHHHhCCCCCEEEEEEECCcceEeccccccCCHH
Confidence 34566676665334557888999999999999999 99999999999999999999999999999999988753 56677
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhch
Q 043643 226 GRENAIRAINTLSSNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLP 305 (634)
Q Consensus 226 ~~~~~~~~I~~l~~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~ 305 (634)
+++.+..+|+.+.++|||+++.||..|++... ....+..+.|||||||..+ +...+.+.+.
T Consensus 332 ~~~~a~~~i~~l~a~GgT~l~~aL~~a~~~~~-~~~~~~~~~iillTDG~~~------------------~~~~~~~~~~ 392 (596)
T TIGR03788 332 NLARARQFVAGLQADGGTEMAGALSAALRDDG-PESSGALRQVVFLTDGAVG------------------NEDALFQLIR 392 (596)
T ss_pred HHHHHHHHHhhCCCCCCccHHHHHHHHHHhhc-ccCCCceeEEEEEeCCCCC------------------CHHHHHHHHH
Confidence 88899999999999999999999999998742 2223556789999999753 1223333322
Q ss_pred hhhhccccccCCCCeeEEEEEccCCCChHHHHHHHhhcCCeEEEcCChhhHHHHHHHHhhccccceeeeeEEEEEecCCC
Q 043643 306 SSICLSKREAGQPTFPVHTFGFGLEHDSEAMHAIADASGGTFSFIETLSILQDAFARCIGGLLSVVSQDVKLTIRSKSAG 385 (634)
Q Consensus 306 ~~i~~~~~~~~~~~i~I~t~G~G~~~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f~~~l~~l~s~va~~~~l~v~~~~~~ 385 (634)
. ...+++||+||||.+.|..+|+.||+.++|.|+++.+.+++...+.+.+..+.+++.+++++.+..
T Consensus 393 ----~-----~~~~~ri~tvGiG~~~n~~lL~~lA~~g~G~~~~i~~~~~~~~~~~~~l~~~~~p~l~~v~v~~~~---- 459 (596)
T TIGR03788 393 ----T-----KLGDSRLFTVGIGSAPNSYFMRKAAQFGRGSFTFIGSTDEVQRKMSQLFAKLEQPALTDIALTFDN---- 459 (596)
T ss_pred ----H-----hcCCceEEEEEeCCCcCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHHHHhhcCeEEEEEEEEEcC----
Confidence 1 234689999999999999999999999999999999999999999999999999999999988752
Q ss_pred eEEEEecCCCCCcccccCCceeEEEcCCccCCcEEEEEEEE
Q 043643 386 VRIGSIPSGRYNSEVLDEGQQAVIDIGNLYADEEKEFMVYL 426 (634)
Q Consensus 386 v~i~~v~~~~~~~~~~~~~~~~~i~lg~l~~~e~r~~lv~l 426 (634)
..+..+ ..-.+++||.|++..+..++
T Consensus 460 ~~~~~v---------------~P~~~p~L~~g~~l~v~g~~ 485 (596)
T TIGR03788 460 GNAADV---------------YPSPIPDLYRGEPLQIAIKL 485 (596)
T ss_pred Ccccee---------------ccCCCccccCCCEEEEEEEe
Confidence 111112 22347899999987777664
No 2
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=99.93 E-value=2.8e-25 Score=209.31 Aligned_cols=154 Identities=54% Similarity=0.902 Sum_probs=136.5
Q ss_pred ceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCCCCCCCcHH
Q 043643 168 IDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLSSNGGTNIV 246 (634)
Q Consensus 168 ~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~~~GgT~i~ 246 (634)
+|++||||.||||.+ |++.+|+++..+++.|.++|+++||+|++.+..+.|+++++..++..+.+.|+.+.++|+|+++
T Consensus 1 ~~v~~vlD~S~SM~~~rl~~ak~a~~~l~~~l~~~~~~~li~F~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~ 80 (155)
T cd01466 1 VDLVAVLDVSGSMAGDKLQLVKHALRFVISSLGDADRLSIVTFSTSAKRLSPLRRMTAKGKRSAKRVVDGLQAGGGTNVV 80 (155)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcceEEEEEecCCccccCCCcccCHHHHHHHHHHHHhccCCCCccHH
Confidence 589999999999999 9999999999999999999999999999999999999988888889999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCCeeEEEEE
Q 043643 247 EGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPTFPVHTFG 326 (634)
Q Consensus 247 ~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G 326 (634)
.||..|.+.+......+..+.|||||||.++.+. .. .. ....++.||+||
T Consensus 81 ~al~~a~~~~~~~~~~~~~~~iillTDG~~~~~~------------------~~---~~---------~~~~~v~v~~ig 130 (155)
T cd01466 81 GGLKKALKVLGDRRQKNPVASIMLLSDGQDNHGA------------------VV---LR---------ADNAPIPIHTFG 130 (155)
T ss_pred HHHHHHHHHHhhcccCCCceEEEEEcCCCCCcch------------------hh---hc---------ccCCCceEEEEe
Confidence 9999999999765555566789999999987430 11 11 234789999999
Q ss_pred ccCCCChHHHHHHHhhcCCeEEEcC
Q 043643 327 FGLEHDSEAMHAIADASGGTFSFIE 351 (634)
Q Consensus 327 ~G~~~d~~~L~~iA~~tgG~~~~i~ 351 (634)
||.+.+...|+.||+.+||+|||+.
T Consensus 131 ig~~~~~~~l~~iA~~t~G~~~~~~ 155 (155)
T cd01466 131 LGASHDPALLAFIAEITGGTFSYVK 155 (155)
T ss_pred cCCCCCHHHHHHHHhccCceEEEeC
Confidence 9999999999999999999999974
No 3
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=99.92 E-value=4e-24 Score=204.11 Aligned_cols=169 Identities=29% Similarity=0.483 Sum_probs=143.2
Q ss_pred ceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCCCCCCCcHH
Q 043643 168 IDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLSSNGGTNIV 246 (634)
Q Consensus 168 ~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~~~GgT~i~ 246 (634)
++++||||+||||.+ +++.+|.++..++..|.++++++||.|++....++|++.. .++..+...|+.+.++|+|+++
T Consensus 1 ~~~~~vlD~S~SM~~~~~~~~k~a~~~~~~~l~~~~~v~li~f~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~g~T~~~ 78 (170)
T cd01465 1 LNLVFVIDRSGSMDGPKLPLVKSALKLLVDQLRPDDRLAIVTYDGAAETVLPATPV--RDKAAILAAIDRLTAGGSTAGG 78 (170)
T ss_pred CcEEEEEECCCCCCChhHHHHHHHHHHHHHhCCCCCEEEEEEecCCccEEecCccc--chHHHHHHHHHcCCCCCCCCHH
Confidence 589999999999999 9999999999999999999999999999999999887643 3457888899999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCCeeEEEEE
Q 043643 247 EGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPTFPVHTFG 326 (634)
Q Consensus 247 ~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G 326 (634)
.||..|++.+.....+...+.|||+|||.++.+.. ....+.+.+. ..+..++.||+||
T Consensus 79 ~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~~--------------~~~~~~~~~~--------~~~~~~v~i~~i~ 136 (170)
T cd01465 79 AGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGET--------------DPDELARLVA--------QKRESGITLSTLG 136 (170)
T ss_pred HHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCCC--------------CHHHHHHHHH--------HhhcCCeEEEEEE
Confidence 99999999997665444557799999999886532 1223333322 1245789999999
Q ss_pred ccCCCChHHHHHHHhhcCCeEEEcCChhhHHHHH
Q 043643 327 FGLEHDSEAMHAIADASGGTFSFIETLSILQDAF 360 (634)
Q Consensus 327 ~G~~~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f 360 (634)
||.+.+...|+.||..++|.|+++++..+++++|
T Consensus 137 ~g~~~~~~~l~~ia~~~~g~~~~~~~~~~~~~~~ 170 (170)
T cd01465 137 FGDNYNEDLMEAIADAGNGNTAYIDNLAEARKVF 170 (170)
T ss_pred eCCCcCHHHHHHHHhcCCceEEEeCCHHHHHhhC
Confidence 9998999999999999999999999999998875
No 4
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=99.92 E-value=6e-24 Score=207.18 Aligned_cols=167 Identities=26% Similarity=0.353 Sum_probs=136.6
Q ss_pred CCCCCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEEcCc-----ccCHHHHHHHHHHHhc
Q 043643 163 ADRAPIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFPLQ-----RMTDSGRENAIRAINT 236 (634)
Q Consensus 163 ~~r~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~pl~-----~~t~~~~~~~~~~I~~ 236 (634)
....|.+++||||+||||.+ +|+.+|.++..+++.|.++|+++||+|++.++.++|+. ..+..+++.+...|+.
T Consensus 9 ~~~~p~~vv~llD~SgSM~~~~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 88 (190)
T cd01463 9 AATSPKDIVILLDVSGSMTGQRLHLAKQTVSSILDTLSDNDFFNIITFSNEVNPVVPCFNDTLVQATTSNKKVLKEALDM 88 (190)
T ss_pred cccCCceEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCeeEEeeecccceEecCHHHHHHHHHHHhh
Confidence 34679999999999999999 99999999999999999999999999999999998754 2345678899999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhc-------cCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhh
Q 043643 237 LSSNGGTNIVEGLKKGARVLEERR-------ERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSIC 309 (634)
Q Consensus 237 l~~~GgT~i~~aL~~A~~~l~~~~-------~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~ 309 (634)
|.++|+|+++.||..|++.+.... .++..+.|||||||.++... ..+..+..
T Consensus 89 l~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~-----------------~~~~~~~~---- 147 (190)
T cd01463 89 LEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPENYK-----------------EIFDKYNW---- 147 (190)
T ss_pred CCCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCcHh-----------------HHHHHhcc----
Confidence 999999999999999999997621 12345689999999987421 11221110
Q ss_pred ccccccCCCCeeEEEEEccCCC-ChHHHHHHHhhcCCeEEEcCCh
Q 043643 310 LSKREAGQPTFPVHTFGFGLEH-DSEAMHAIADASGGTFSFIETL 353 (634)
Q Consensus 310 ~~~~~~~~~~i~I~t~G~G~~~-d~~~L~~iA~~tgG~~~~i~~~ 353 (634)
. .....++.||+||||.+. |..+|+.||..++|+|+++++.
T Consensus 148 ~---~~~~~~v~i~tigiG~~~~d~~~L~~lA~~~~G~~~~i~~~ 189 (190)
T cd01463 148 D---KNSEIPVRVFTYLIGREVTDRREIQWMACENKGYYSHIQSL 189 (190)
T ss_pred c---ccCCCcEEEEEEecCCccccchHHHHHHhhcCCeEEEcccC
Confidence 0 112357999999999985 8999999999999999999875
No 5
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=99.91 E-value=1.7e-23 Score=205.35 Aligned_cols=180 Identities=19% Similarity=0.310 Sum_probs=138.7
Q ss_pred ceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCC-----
Q 043643 168 IDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLG---SADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLS----- 238 (634)
Q Consensus 168 ~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~---~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~----- 238 (634)
+|++||||+||||.+ +|+.+|.++..+++.|. +.+|++||+|++.++.++|++.....++..+...|+.+.
T Consensus 1 ~di~~vlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (198)
T cd01470 1 LNIYIALDASDSIGEEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKEIVSIRDFNSNDADDVIKRLEDFNYDDHG 80 (198)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHHHHHccccCCCceEEEEEecCCceEEEecccCCCCCHHHHHHHHHhCCccccc
Confidence 589999999999998 99999999999999986 379999999999999999998766667888999998875
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcc------CCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccc
Q 043643 239 SNGGTNIVEGLKKGARVLEERRE------RSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSK 312 (634)
Q Consensus 239 ~~GgT~i~~aL~~A~~~l~~~~~------~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~ 312 (634)
.+|||+++.||..+.+.+..... .+..+.|||||||.++.+.... .....+..++.. ....
T Consensus 81 ~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~-----------~~~~~~~~~~~~--~~~~ 147 (198)
T cd01470 81 DKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGGSPL-----------PTVDKIKNLVYK--NNKS 147 (198)
T ss_pred CccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCCChh-----------HHHHHHHHHHhc--cccc
Confidence 35899999999999988742211 1234679999999998653211 001122222110 0000
Q ss_pred cccCCCCeeEEEEEccCCCChHHHHHHHhhcCC--eEEEcCChhhHHHHH
Q 043643 313 REAGQPTFPVHTFGFGLEHDSEAMHAIADASGG--TFSFIETLSILQDAF 360 (634)
Q Consensus 313 ~~~~~~~i~I~t~G~G~~~d~~~L~~iA~~tgG--~~~~i~~~~~l~~~f 360 (634)
...+..++.||+||+|.+.|...|+.||..++| ++|++.+.++|.++|
T Consensus 148 ~~~~~~~v~i~~iGvG~~~~~~~L~~iA~~~~g~~~~f~~~~~~~l~~v~ 197 (198)
T cd01470 148 DNPREDYLDVYVFGVGDDVNKEELNDLASKKDNERHFFKLKDYEDLQEVF 197 (198)
T ss_pred ccchhcceeEEEEecCcccCHHHHHHHhcCCCCCceEEEeCCHHHHHHhc
Confidence 012456899999999999999999999999998 578899999998876
No 6
>PRK13685 hypothetical protein; Provisional
Probab=99.90 E-value=6.3e-23 Score=216.33 Aligned_cols=179 Identities=26% Similarity=0.350 Sum_probs=146.3
Q ss_pred CCCCCceEEEEEeCCCCCCc------cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhc
Q 043643 163 ADRAPIDLVTVLDVSGSMSS------KLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINT 236 (634)
Q Consensus 163 ~~r~p~dlv~VlD~SgSM~g------kl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~ 236 (634)
..+.+.++|+|||+||||.+ ||+.+|+++..+++.+.++|+++||+|++++..+.|++ .+++.+...|+.
T Consensus 84 ~~~~~~~vvlvlD~S~SM~~~D~~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a~~~~p~t----~d~~~l~~~l~~ 159 (326)
T PRK13685 84 IPRNRAVVMLVIDVSQSMRATDVEPNRLAAAQEAAKQFADELTPGINLGLIAFAGTATVLVSPT----TNREATKNAIDK 159 (326)
T ss_pred cCCCCceEEEEEECCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCceeecCCCC----CCHHHHHHHHHh
Confidence 45567899999999999984 89999999999999999999999999999999999988 578899999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhh------ccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhc
Q 043643 237 LSSNGGTNIVEGLKKGARVLEER------RERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICL 310 (634)
Q Consensus 237 l~~~GgT~i~~aL~~A~~~l~~~------~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~ 310 (634)
+.++|+|++++||..|++.+... ......+.|||+|||.++.+.... .....+. ...
T Consensus 160 l~~~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~~-----------~~~~~~~-aa~----- 222 (326)
T PRK13685 160 LQLADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNPD-----------NPRGAYT-AAR----- 222 (326)
T ss_pred CCCCCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCCC-----------CcccHHH-HHH-----
Confidence 99999999999999999998642 112335679999999988653210 0000111 111
Q ss_pred cccccCCCCeeEEEEEccCC--------------CChHHHHHHHhhcCCeEEEcCChhhHHHHHHHHhh
Q 043643 311 SKREAGQPTFPVHTFGFGLE--------------HDSEAMHAIADASGGTFSFIETLSILQDAFARCIG 365 (634)
Q Consensus 311 ~~~~~~~~~i~I~t~G~G~~--------------~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f~~~l~ 365 (634)
.++..+|+||+||||.+ .|+..|++||+.|||.||++.+.++|.++|.++-.
T Consensus 223 ---~a~~~gi~i~~Ig~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~~~~~~~~~L~~if~~I~~ 288 (326)
T PRK13685 223 ---TAKDQGVPISTISFGTPYGSVEINGQRQPVPVDDESLKKIAQLSGGEFYTAASLEELRAVYATLQQ 288 (326)
T ss_pred ---HHHHcCCeEEEEEECCCCCCcCcCCceeeecCCHHHHHHHHHhcCCEEEEcCCHHHHHHHHHHHHH
Confidence 12457999999999974 47889999999999999999999999999998754
No 7
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=99.90 E-value=1.3e-22 Score=231.32 Aligned_cols=185 Identities=25% Similarity=0.348 Sum_probs=148.5
Q ss_pred CCCCCCceEEEEEeCCCCCCc--cHHHHHHHHHHHH-HhcCCCCeEEEEEeCCCcEEEEcCcccCHH-HHHHHHHHHhcC
Q 043643 162 DADRAPIDLVTVLDVSGSMSS--KLPLLKRAVHFII-QNLGSADRLSIVIFSSVARRIFPLQRMTDS-GRENAIRAINTL 237 (634)
Q Consensus 162 ~~~r~p~dlv~VlD~SgSM~g--kl~~~K~al~~li-~~L~~~drvsIV~Fs~~a~~~~pl~~~t~~-~~~~~~~~I~~l 237 (634)
.....+.++|||||+||||.+ ||..+|+|+..++ +.+.++|+++||+|++.+..+.||++++.. .++.+...+. +
T Consensus 299 ~lq~~~r~VVLVLDvSGSM~g~dRL~~lkqAA~~fL~~~l~~~DrVGLVtFsssA~vl~pLt~Its~~dr~aL~~~L~-~ 377 (863)
T TIGR00868 299 LLKIRQRIVCLVLDKSGSMTVEDRLKRMNQAAKLFLLQTVEKGSWVGMVTFDSAAYIKNELIQITSSAERDALTANLP-T 377 (863)
T ss_pred ecccCCceEEEEEECCccccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEECCceeEeeccccCCcHHHHHHHHHhhc-c
Confidence 345566789999999999987 8999999987654 567889999999999999999999988764 4455555553 5
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCC
Q 043643 238 SSNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQ 317 (634)
Q Consensus 238 ~~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~ 317 (634)
.++|||+|+.||..|+++|.....++..+.|||||||.++.+ ...... .+.
T Consensus 378 ~A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~~------------------~~~l~~-----------lk~ 428 (863)
T TIGR00868 378 AASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNTI------------------SSCFEE-----------VKQ 428 (863)
T ss_pred ccCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCCH------------------HHHHHH-----------HHH
Confidence 689999999999999999987654455678999999998731 111111 124
Q ss_pred CCeeEEEEEccCCCChHHHHHHHhhcCCeEEEcCChh---hHHHHHHHHhhccccceeeeeEE
Q 043643 318 PTFPVHTFGFGLEHDSEAMHAIADASGGTFSFIETLS---ILQDAFARCIGGLLSVVSQDVKL 377 (634)
Q Consensus 318 ~~i~I~t~G~G~~~d~~~L~~iA~~tgG~~~~i~~~~---~l~~~f~~~l~~l~s~va~~~~l 377 (634)
.+++|||||||.+.+. .|+.||+.|||.||++.+.. .|.++|.++..+..++..+.+.+
T Consensus 429 ~gVtI~TIg~G~dad~-~L~~IA~~TGG~~f~asd~~dl~~L~dAF~~issg~~~~~q~~lql 490 (863)
T TIGR00868 429 SGAIIHTIALGPSAAK-ELEELSDMTGGLRFYASDQADNNGLIDAFGALSSGNGSASQQSIQL 490 (863)
T ss_pred cCCEEEEEEeCCChHH-HHHHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhcccCccceeeEEe
Confidence 6999999999998764 58999999999999999765 57889999998888877666653
No 8
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=99.90 E-value=1.9e-22 Score=192.59 Aligned_cols=166 Identities=29% Similarity=0.400 Sum_probs=137.8
Q ss_pred CceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEEcCc-ccCHHHHHHHHHHHhcCCCCCCCc
Q 043643 167 PIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFPLQ-RMTDSGRENAIRAINTLSSNGGTN 244 (634)
Q Consensus 167 p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~pl~-~~t~~~~~~~~~~I~~l~~~GgT~ 244 (634)
|.+++||||+||||.+ +++.+|.++..++..|.++++++|++|++++..+.+.. ..+..+...+.+.|+.+.++|+|+
T Consensus 2 ~~~v~~vlD~S~SM~~~~~~~~~~al~~~l~~l~~~~~~~l~~Fs~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~T~ 81 (171)
T cd01461 2 PKEVVFVIDTSGSMSGTKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEFSPSSVSATAENVAAAIEYVNRLQALGGTN 81 (171)
T ss_pred CceEEEEEECCCCCCChhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCceeecCcceeCCHHHHHHHHHHHHhcCCCCCcC
Confidence 7899999999999999 99999999999999999999999999999988876643 334556778888999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCCeeEEE
Q 043643 245 IVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPTFPVHT 324 (634)
Q Consensus 245 i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i~I~t 324 (634)
+..||..|++.+... .+..+.|||+|||..+. ..++.+.+. .+...+++||+
T Consensus 82 l~~al~~a~~~l~~~--~~~~~~iillTDG~~~~------------------~~~~~~~~~--------~~~~~~i~i~~ 133 (171)
T cd01461 82 MNDALEAALELLNSS--PGSVPQIILLTDGEVTN------------------ESQILKNVR--------EALSGRIRLFT 133 (171)
T ss_pred HHHHHHHHHHhhccC--CCCccEEEEEeCCCCCC------------------HHHHHHHHH--------HhcCCCceEEE
Confidence 999999999998652 34567899999998542 123333222 12335899999
Q ss_pred EEccCCCChHHHHHHHhhcCCeEEEcCChhhHHHHH
Q 043643 325 FGFGLEHDSEAMHAIADASGGTFSFIETLSILQDAF 360 (634)
Q Consensus 325 ~G~G~~~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f 360 (634)
||||.+.+...|+.||+.+||.|+++.+.+++.+.+
T Consensus 134 i~~g~~~~~~~l~~ia~~~gG~~~~~~~~~~~~~~~ 169 (171)
T cd01461 134 FGIGSDVNTYLLERLAREGRGIARRIYETDDIESQL 169 (171)
T ss_pred EEeCCccCHHHHHHHHHcCCCeEEEecChHHHHHHh
Confidence 999998999999999999999999999999887643
No 9
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=99.89 E-value=1.9e-22 Score=189.88 Aligned_cols=151 Identities=36% Similarity=0.621 Sum_probs=129.5
Q ss_pred eEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEEcC-cccCHHHHHHHHHHHhcCCC-CCCCcH
Q 043643 169 DLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFPL-QRMTDSGRENAIRAINTLSS-NGGTNI 245 (634)
Q Consensus 169 dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~pl-~~~t~~~~~~~~~~I~~l~~-~GgT~i 245 (634)
|+|||||+|+||.| + +.+|+++..+++.|+++|+|+||.|++.+..++|- .+.+..+++.+.++|+.+.+ .|+|++
T Consensus 2 ~vvilvD~S~Sm~g~~-~~~k~al~~~l~~L~~~d~fnii~f~~~~~~~~~~~~~~~~~~~~~a~~~I~~~~~~~G~t~l 80 (155)
T PF13768_consen 2 DVVILVDTSGSMSGEK-ELVKDALRAILRSLPPGDRFNIIAFGSSVRPLFPGLVPATEENRQEALQWIKSLEANSGGTDL 80 (155)
T ss_pred eEEEEEeCCCCCCCcH-HHHHHHHHHHHHhCCCCCEEEEEEeCCEeeEcchhHHHHhHHHHHHHHHHHHHhcccCCCccH
Confidence 79999999999999 7 99999999999999999999999999999888874 56788899999999999999 999999
Q ss_pred HHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCCeeEEEE
Q 043643 246 VEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPTFPVHTF 325 (634)
Q Consensus 246 ~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~ 325 (634)
..||+.|++.+ ..++....|||||||.+..+ ...+...+. . ....++||+|
T Consensus 81 ~~aL~~a~~~~---~~~~~~~~IilltDG~~~~~-----------------~~~i~~~v~----~-----~~~~~~i~~~ 131 (155)
T PF13768_consen 81 LAALRAALALL---QRPGCVRAIILLTDGQPVSG-----------------EEEILDLVR----R-----ARGHIRIFTF 131 (155)
T ss_pred HHHHHHHHHhc---ccCCCccEEEEEEeccCCCC-----------------HHHHHHHHH----h-----cCCCceEEEE
Confidence 99999999876 33456788999999997421 123333332 1 2367999999
Q ss_pred EccCCCChHHHHHHHhhcCCeEEE
Q 043643 326 GFGLEHDSEAMHAIADASGGTFSF 349 (634)
Q Consensus 326 G~G~~~d~~~L~~iA~~tgG~~~~ 349 (634)
|||.+.+..+|+.||+.++|.|.|
T Consensus 132 ~~g~~~~~~~L~~LA~~~~G~~~f 155 (155)
T PF13768_consen 132 GIGSDADADFLRELARATGGSFHF 155 (155)
T ss_pred EECChhHHHHHHHHHHcCCCEEEC
Confidence 999999999999999999999975
No 10
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.88 E-value=4.5e-22 Score=196.53 Aligned_cols=169 Identities=28% Similarity=0.374 Sum_probs=131.3
Q ss_pred CCCCCCCceEEEEEeCCCCCC------c-cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCc------EEEEcCcccC----
Q 043643 161 NDADRAPIDLVTVLDVSGSMS------S-KLPLLKRAVHFIIQNLGSADRLSIVIFSSVA------RRIFPLQRMT---- 223 (634)
Q Consensus 161 ~~~~r~p~dlv~VlD~SgSM~------g-kl~~~K~al~~li~~L~~~drvsIV~Fs~~a------~~~~pl~~~t---- 223 (634)
....+.|.+++||||+||||. + ||+.+|.++..+++.|.++++++||+|++.. +.++|..+++
T Consensus 14 ~~~~~~~~~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~~~~~~ 93 (206)
T cd01456 14 ETEPQLPPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPKGCLTAPVN 93 (206)
T ss_pred ccccCCCCcEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCccccccccccccccccC
Confidence 456778999999999999998 3 9999999999999999999999999999953 3333221111
Q ss_pred ---HHHHHHHHHHHhcCC-CCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHH
Q 043643 224 ---DSGRENAIRAINTLS-SNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELA 299 (634)
Q Consensus 224 ---~~~~~~~~~~I~~l~-~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~ 299 (634)
..++..+.+.|+.+. ++|+|+++.||..|.+.+. .+..+.|||||||.++.+.. ....
T Consensus 94 ~~~~~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~----~~~~~~iillTDG~~~~~~~--------------~~~~ 155 (206)
T cd01456 94 GFPSAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD----PGRVNVVVLITDGEDTCGPD--------------PCEV 155 (206)
T ss_pred CCCcccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC----CCCcceEEEEcCCCccCCCC--------------HHHH
Confidence 146889999999998 9999999999999999985 23346799999999886421 0112
Q ss_pred HHhhchhhhhccccccCCCCeeEEEEEccCCCChHHHHHHHhhcCCeE-EEcCChh
Q 043643 300 YLNLLPSSICLSKREAGQPTFPVHTFGFGLEHDSEAMHAIADASGGTF-SFIETLS 354 (634)
Q Consensus 300 ~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~~d~~~L~~iA~~tgG~~-~~i~~~~ 354 (634)
...+.. . .....+|.||+||||.+.+...|+.||+.+||.| |.+.+..
T Consensus 156 ~~~~~~----~---~~~~~~i~i~~igiG~~~~~~~l~~iA~~tgG~~~~~~~~~~ 204 (206)
T cd01456 156 ARELAK----R---RTPAPPIKVNVIDFGGDADRAELEAIAEATGGTYAYNQSDLA 204 (206)
T ss_pred HHHHHH----h---cCCCCCceEEEEEecCcccHHHHHHHHHhcCCeEeccccccc
Confidence 222111 0 0123689999999999999999999999999999 7776654
No 11
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=99.87 E-value=8.6e-21 Score=182.97 Aligned_cols=166 Identities=22% Similarity=0.317 Sum_probs=129.8
Q ss_pred EEEEEeCCCCCCc--cHHHHHHHHHHHHH-hcCCCCeEEEEEeCCC-cEEEEcCcccCHHHHHHHHHHHhcCCCCCCCcH
Q 043643 170 LVTVLDVSGSMSS--KLPLLKRAVHFIIQ-NLGSADRLSIVIFSSV-ARRIFPLQRMTDSGRENAIRAINTLSSNGGTNI 245 (634)
Q Consensus 170 lv~VlD~SgSM~g--kl~~~K~al~~li~-~L~~~drvsIV~Fs~~-a~~~~pl~~~t~~~~~~~~~~I~~l~~~GgT~i 245 (634)
++||||+||||.+ |++.+|.++..++. .+.++|+++||+|++. +..++|++ .++..+...|+.+.++|+|++
T Consensus 3 v~lvlD~SgSM~~~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~~~~~~~t----~~~~~~~~~l~~l~~~G~T~l 78 (178)
T cd01451 3 VIFVVDASGSMAARHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAEVLLPPT----RSVELAKRRLARLPTGGGTPL 78 (178)
T ss_pred EEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEeCCC----CCHHHHHHHHHhCCCCCCCcH
Confidence 7899999999997 99999999988886 4578999999999975 77788887 456778889999999999999
Q ss_pred HHHHHHHHHHHHh-hccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHH-HhhchhhhhccccccCCCCeeEE
Q 043643 246 VEGLKKGARVLEE-RRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAY-LNLLPSSICLSKREAGQPTFPVH 323 (634)
Q Consensus 246 ~~aL~~A~~~l~~-~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~-~~lv~~~i~~~~~~~~~~~i~I~ 323 (634)
+.||..|++.+.. ...+...+.|||||||.++.|.... ... ..+.. ..+..+|.|+
T Consensus 79 ~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~~~~--------------~~~~~~~~~--------~l~~~gi~v~ 136 (178)
T cd01451 79 AAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGPDPT--------------ADRALAAAR--------KLRARGISAL 136 (178)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCCCch--------------hHHHHHHHH--------HHHhcCCcEE
Confidence 9999999999832 2222345789999999998753211 111 22211 2245789999
Q ss_pred EEEccCC-CChHHHHHHHhhcCCeEEEcCChhhHHHHHHHH
Q 043643 324 TFGFGLE-HDSEAMHAIADASGGTFSFIETLSILQDAFARC 363 (634)
Q Consensus 324 t~G~G~~-~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f~~~ 363 (634)
+||+|.+ .+..+|+.||+.+||.||+++|.+. .+|..+
T Consensus 137 ~I~~~~~~~~~~~l~~iA~~tgG~~~~~~d~~~--~~~~~~ 175 (178)
T cd01451 137 VIDTEGRPVRRGLAKDLARALGGQYVRLPDLSA--DAIASA 175 (178)
T ss_pred EEeCCCCccCccHHHHHHHHcCCeEEEcCcCCH--HHHHHH
Confidence 9999865 5788999999999999999998864 345544
No 12
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.86 E-value=3.2e-21 Score=187.34 Aligned_cols=163 Identities=20% Similarity=0.215 Sum_probs=130.5
Q ss_pred CceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcC---------CCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhc
Q 043643 167 PIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLG---------SADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINT 236 (634)
Q Consensus 167 p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~---------~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~ 236 (634)
|+||+||||.||||.+ .++.+|+++..+++.|. .++|++||+|++.+...+|++.. ..++..+.+.|++
T Consensus 2 ~~dvv~vlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~~~~~l~~~-~~~~~~l~~~i~~ 80 (186)
T cd01480 2 PVDITFVLDSSESVGLQNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVEAGFLRD-IRNYTSLKEAVDN 80 (186)
T ss_pred CeeEEEEEeCCCccchhhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCceeeEecccc-cCCHHHHHHHHHh
Confidence 7899999999999998 99999999999998883 36899999999999999999743 3568899999999
Q ss_pred CC-CCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhcccccc
Q 043643 237 LS-SNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREA 315 (634)
Q Consensus 237 l~-~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~ 315 (634)
+. .+|+|+++.||..|.+.+.....++..+.|||+|||.++.... ..+...+. .+
T Consensus 81 l~~~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~~----------------~~~~~~~~--------~~ 136 (186)
T cd01480 81 LEYIGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSPD----------------GGIEKAVN--------EA 136 (186)
T ss_pred CccCCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCcc----------------hhHHHHHH--------HH
Confidence 87 4899999999999999997633345678899999999753211 12222111 23
Q ss_pred CCCCeeEEEEEccCCCChHHHHHHHhhcCCeEEEcCChhhH
Q 043643 316 GQPTFPVHTFGFGLEHDSEAMHAIADASGGTFSFIETLSIL 356 (634)
Q Consensus 316 ~~~~i~I~t~G~G~~~d~~~L~~iA~~tgG~~~~i~~~~~l 356 (634)
+..+|.||+||+|. ++...|+.||..+++. |+.++..++
T Consensus 137 ~~~gi~i~~vgig~-~~~~~L~~IA~~~~~~-~~~~~~~~l 175 (186)
T cd01480 137 DHLGIKIFFVAVGS-QNEEPLSRIACDGKSA-LYRENFAEL 175 (186)
T ss_pred HHCCCEEEEEecCc-cchHHHHHHHcCCcch-hhhcchhhh
Confidence 46799999999998 8999999999988887 555555444
No 13
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=99.86 E-value=2.8e-20 Score=194.09 Aligned_cols=175 Identities=23% Similarity=0.312 Sum_probs=140.1
Q ss_pred CCCceEEEEEeCCCCCCccHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCCC----
Q 043643 165 RAPIDLVTVLDVSGSMSSKLPLLKRAVHFIIQN-LGSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLSS---- 239 (634)
Q Consensus 165 r~p~dlv~VlD~SgSM~gkl~~~K~al~~li~~-L~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~~---- 239 (634)
..|++++||||.||||.+++..+|+++..+++. +.++|+++||.|++.+..+.+++ .++..+.+.|+.+.+
T Consensus 51 ~~p~~vvlvlD~SgSM~~~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~~~~~~t----~~~~~l~~~l~~l~~~~~~ 126 (296)
T TIGR03436 51 DLPLTVGLVIDTSGSMRNDLDRARAAAIRFLKTVLRPNDRVFVVTFNTRLRLLQDFT----SDPRLLEAALNRLKPPLRT 126 (296)
T ss_pred CCCceEEEEEECCCCchHHHHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeEeecCC----CCHHHHHHHHHhccCCCcc
Confidence 469999999999999999999999999999987 78999999999999999998887 557889999999877
Q ss_pred -----------CCCCcHHHHHHHHHH-HHHhhccC-CCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchh
Q 043643 240 -----------NGGTNIVEGLKKGAR-VLEERRER-SPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPS 306 (634)
Q Consensus 240 -----------~GgT~i~~aL~~A~~-~l~~~~~~-~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~ 306 (634)
+|+|+++.||..|.. .+...... ...+.|||||||.++.+ ...+.+++.
T Consensus 127 ~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~rk~iIllTDG~~~~~-----------------~~~~~~~~~- 188 (296)
T TIGR03436 127 DYNSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGRKALIVISDGGDNRS-----------------RDTLERAID- 188 (296)
T ss_pred ccccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCCeEEEEEecCCCcch-----------------HHHHHHHHH-
Confidence 899999999977754 44333211 12467999999987642 123443332
Q ss_pred hhhccccccCCCCeeEEEEEccCC-------------CChHHHHHHHhhcCCeEEEcCChhhHHHHHHHHhhcccc
Q 043643 307 SICLSKREAGQPTFPVHTFGFGLE-------------HDSEAMHAIADASGGTFSFIETLSILQDAFARCIGGLLS 369 (634)
Q Consensus 307 ~i~~~~~~~~~~~i~I~t~G~G~~-------------~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f~~~l~~l~s 369 (634)
.+...+|.||+||+|.. .+...|+.||+.|||.||++ +.++|..+|.++...+.+
T Consensus 189 -------~~~~~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~~-~~~~l~~~f~~i~~~~~~ 256 (296)
T TIGR03436 189 -------AAQRADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGRAFYV-NSNDLDGAFAQIAEELRS 256 (296)
T ss_pred -------HHHHcCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCeEecc-cCccHHHHHHHHHHHHhh
Confidence 12357899999999842 25689999999999999999 889999999998876644
No 14
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=99.86 E-value=7.9e-21 Score=183.66 Aligned_cols=164 Identities=18% Similarity=0.307 Sum_probs=129.4
Q ss_pred ceEEEEEeCCCCCCc------cHHHHHHHHHHHHHhc---CCCCeEEEEEe-CCCcEEEEcCcccCHHHHHHHHHHHhcC
Q 043643 168 IDLVTVLDVSGSMSS------KLPLLKRAVHFIIQNL---GSADRLSIVIF-SSVARRIFPLQRMTDSGRENAIRAINTL 237 (634)
Q Consensus 168 ~dlv~VlD~SgSM~g------kl~~~K~al~~li~~L---~~~drvsIV~F-s~~a~~~~pl~~~t~~~~~~~~~~I~~l 237 (634)
.|++++||+|+||.. ||+.+|.++..|++.+ .+.++++||+| ++.+..+.|++ .+.+.+...+..+
T Consensus 4 r~ivi~lD~S~SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~~~PlT----~D~~~~~~~L~~~ 79 (183)
T cd01453 4 RHLIIVIDCSRSMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKLTDLT----GNPRKHIQALKTA 79 (183)
T ss_pred eEEEEEEECcHHHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEEEECCC----CCHHHHHHHhhcc
Confidence 589999999999984 9999999999999865 67899999999 79999999999 4455677777765
Q ss_pred -CCCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccC
Q 043643 238 -SSNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAG 316 (634)
Q Consensus 238 -~~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~ 316 (634)
.+.|+|+++.||..|++.|.........+.|||+|||.+... .++.++.. .++
T Consensus 80 ~~~~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~~------------------~~~~~~~~--------~l~ 133 (183)
T cd01453 80 RECSGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCDP------------------GNIYETID--------KLK 133 (183)
T ss_pred cCCCCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCCh------------------hhHHHHHH--------HHH
Confidence 667889999999999999975422223346888888865421 11222211 123
Q ss_pred CCCeeEEEEEccCCCChHHHHHHHhhcCCeEEEcCChhhHHHHHHHH
Q 043643 317 QPTFPVHTFGFGLEHDSEAMHAIADASGGTFSFIETLSILQDAFARC 363 (634)
Q Consensus 317 ~~~i~I~t~G~G~~~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f~~~ 363 (634)
+.+|+||+||||.+ ...|++||+.|||.||.+.|.++|.++|.+.
T Consensus 134 ~~~I~v~~IgiG~~--~~~L~~ia~~tgG~~~~~~~~~~l~~~~~~~ 178 (183)
T cd01453 134 KENIRVSVIGLSAE--MHICKEICKATNGTYKVILDETHLKELLLEH 178 (183)
T ss_pred HcCcEEEEEEechH--HHHHHHHHHHhCCeeEeeCCHHHHHHHHHhc
Confidence 57899999999964 4689999999999999999999888888764
No 15
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=99.86 E-value=3.3e-20 Score=180.03 Aligned_cols=178 Identities=23% Similarity=0.276 Sum_probs=127.9
Q ss_pred CCCceEEEEEeCCCCCCccHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCCCCCCC
Q 043643 165 RAPIDLVTVLDVSGSMSSKLPLLKRAVHFIIQNL-GSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLSSNGGT 243 (634)
Q Consensus 165 r~p~dlv~VlD~SgSM~gkl~~~K~al~~li~~L-~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~~~GgT 243 (634)
..++||+||||.||||.+.+...++.++.+++.+ .+++|++||+|++.++.++||+.... ......+.|+.+.++|+|
T Consensus 2 ~~~~Dvv~llD~SgSm~~~~~~~~~~~~~l~~~~~~~~~rvglv~Fs~~~~~~~~l~~~~~-~~~~~l~~l~~~~~~g~T 80 (185)
T cd01474 2 AGHFDLYFVLDKSGSVAANWIEIYDFVEQLVDRFNSPGLRFSFITFSTRATKILPLTDDSS-AIIKGLEVLKKVTPSGQT 80 (185)
T ss_pred CCceeEEEEEeCcCchhhhHHHHHHHHHHHHHHcCCCCcEEEEEEecCCceEEEeccccHH-HHHHHHHHHhccCCCCCC
Confidence 3579999999999999983333445666666554 46899999999999999999985433 223334446777889999
Q ss_pred cHHHHHHHHHHHHHhhc--cCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCCee
Q 043643 244 NIVEGLKKGARVLEERR--ERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPTFP 321 (634)
Q Consensus 244 ~i~~aL~~A~~~l~~~~--~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i~ 321 (634)
+++.||..|.+.+.... .+...+.|||||||.++...... ...... ..+..++.
T Consensus 81 ~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~~~~------------~~~~a~------------~l~~~gv~ 136 (185)
T cd01474 81 YIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNGHKY------------PEHEAK------------LSRKLGAI 136 (185)
T ss_pred cHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCCCcc------------hHHHHH------------HHHHcCCE
Confidence 99999999999885322 22234779999999985211100 011111 12347899
Q ss_pred EEEEEccCCCChHHHHHHHhhcCCeEEEcCChhhHHHHHHHHhhccc
Q 043643 322 VHTFGFGLEHDSEAMHAIADASGGTFSFIETLSILQDAFARCIGGLL 368 (634)
Q Consensus 322 I~t~G~G~~~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f~~~l~~l~ 368 (634)
||+||+| +++...|+.||..+++.|+...+++.|...+..+...+.
T Consensus 137 i~~vgv~-~~~~~~L~~iA~~~~~~f~~~~~~~~l~~~~~~~~~~~C 182 (185)
T cd01474 137 VYCVGVT-DFLKSQLINIADSKEYVFPVTSGFQALSGIIESVVKKAC 182 (185)
T ss_pred EEEEeec-hhhHHHHHHHhCCCCeeEecCccHHHHHHHHHHHHHhhc
Confidence 9999994 688999999999776544456789999888888776654
No 16
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.84 E-value=5.5e-20 Score=177.45 Aligned_cols=158 Identities=26% Similarity=0.350 Sum_probs=123.8
Q ss_pred CceEEEEEeCCCCCCc-------cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcC--
Q 043643 167 PIDLVTVLDVSGSMSS-------KLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTL-- 237 (634)
Q Consensus 167 p~dlv~VlD~SgSM~g-------kl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l-- 237 (634)
++|++||||+|+||.. +++.+|.++..++.. .++|+++||.|++.+..++|++ .++..+.+.++.+
T Consensus 2 ~~~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~~~-~~~~~v~lv~f~~~~~~~~~~~----~~~~~~~~~l~~l~~ 76 (180)
T cd01467 2 GRDIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFIDR-RENDRIGLVVFAGAAFTQAPLT----LDRESLKELLEDIKI 76 (180)
T ss_pred CceEEEEEECCcccccccCCCCCHHHHHHHHHHHHHHh-CCCCeEEEEEEcCCeeeccCCC----ccHHHHHHHHHHhhh
Confidence 6899999999999973 688999998888775 4699999999999998888887 3355555555554
Q ss_pred -CCCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccC
Q 043643 238 -SSNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAG 316 (634)
Q Consensus 238 -~~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~ 316 (634)
.++|+|+++.||..+++.+.... ...+.|||+|||.++.+... ....... +.
T Consensus 77 ~~~~g~T~l~~al~~a~~~l~~~~--~~~~~iiliTDG~~~~g~~~--------------~~~~~~~-----------~~ 129 (180)
T cd01467 77 GLAGQGTAIGDAIGLAIKRLKNSE--AKERVIVLLTDGENNAGEID--------------PATAAEL-----------AK 129 (180)
T ss_pred cccCCCCcHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCC--------------HHHHHHH-----------HH
Confidence 46899999999999999997543 33467999999998754221 1122111 12
Q ss_pred CCCeeEEEEEccC-----------CCChHHHHHHHhhcCCeEEEcCChhhH
Q 043643 317 QPTFPVHTFGFGL-----------EHDSEAMHAIADASGGTFSFIETLSIL 356 (634)
Q Consensus 317 ~~~i~I~t~G~G~-----------~~d~~~L~~iA~~tgG~~~~i~~~~~l 356 (634)
..+|+||+||||. +.+...|+.||+.|||.|+++.+.++|
T Consensus 130 ~~gi~i~~i~ig~~~~~~~~~~~~~~~~~~l~~la~~tgG~~~~~~~~~~~ 180 (180)
T cd01467 130 NKGVRIYTIGVGKSGSGPKPDGSTILDEDSLVEIADKTGGRIFRALDGFEL 180 (180)
T ss_pred HCCCEEEEEEecCCCCCcCCCCcccCCHHHHHHHHHhcCCEEEEecCcccC
Confidence 4689999999998 578889999999999999999887653
No 17
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=99.83 E-value=5.7e-20 Score=174.74 Aligned_cols=152 Identities=24% Similarity=0.356 Sum_probs=124.8
Q ss_pred ceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCCC-CCC
Q 043643 168 IDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLG---SADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLSS-NGG 242 (634)
Q Consensus 168 ~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~---~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~~-~Gg 242 (634)
+|||||||+||||.+ +++.+|+++..++..|. .++|++||+|++++..++|++. ..+++.+.+.|+.+.+ +|+
T Consensus 1 ~Dvv~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~~~~~~~~--~~~~~~~~~~l~~l~~~~g~ 78 (164)
T cd01472 1 ADIVFLVDGSESIGLSNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRTEFYLNT--YRSKDDVLEAVKNLRYIGGG 78 (164)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCceeEEEecCC--CCCHHHHHHHHHhCcCCCCC
Confidence 589999999999999 99999999999999886 4679999999999999999985 3457888899999887 688
Q ss_pred CcHHHHHHHHHHHHHhh---ccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCC
Q 043643 243 TNIVEGLKKGARVLEER---RERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPT 319 (634)
Q Consensus 243 T~i~~aL~~A~~~l~~~---~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~ 319 (634)
|+++.||..|.+.+... ..++..+.|||+|||.++.+. ...... + +..+
T Consensus 79 T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~~~----------------~~~~~~-----l-------~~~g 130 (164)
T cd01472 79 TNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQDDV----------------EEPAVE-----L-------KQAG 130 (164)
T ss_pred chHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCchH----------------HHHHHH-----H-------HHCC
Confidence 99999999999999753 234556789999999766321 011111 1 2478
Q ss_pred eeEEEEEccCCCChHHHHHHHhhcCCeEEEc
Q 043643 320 FPVHTFGFGLEHDSEAMHAIADASGGTFSFI 350 (634)
Q Consensus 320 i~I~t~G~G~~~d~~~L~~iA~~tgG~~~~i 350 (634)
|.|++||+|.. +...|+.||..++|.|.|.
T Consensus 131 v~i~~ig~g~~-~~~~L~~ia~~~~~~~~~~ 160 (164)
T cd01472 131 IEVFAVGVKNA-DEEELKQIASDPKELYVFN 160 (164)
T ss_pred CEEEEEECCcC-CHHHHHHHHCCCchheEEe
Confidence 99999999976 9999999999999988765
No 18
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.82 E-value=1.6e-19 Score=173.76 Aligned_cols=144 Identities=23% Similarity=0.384 Sum_probs=112.5
Q ss_pred CceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcCC------CCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCCC
Q 043643 167 PIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLGS------ADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLSS 239 (634)
Q Consensus 167 p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~~------~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~~ 239 (634)
.++++||||+||||.+ +++.+|+++..+++.|.+ +++++||+|++.++.++|++.+.. ..++.+.+
T Consensus 3 ~~~v~~llD~SgSM~~~~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~~~~~l~~~~~-------~~~~~l~~ 75 (176)
T cd01464 3 RLPIYLLLDTSGSMAGEPIEALNQGLQMLQSELRQDPYALESVEISVITFDSAARVIVPLTPLES-------FQPPRLTA 75 (176)
T ss_pred CCCEEEEEECCCCCCChHHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCceEecCCccHHh-------cCCCcccC
Confidence 5789999999999999 999999999999998864 569999999999999999984321 12456789
Q ss_pred CCCCcHHHHHHHHHHHHHhhcc-------CCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccc
Q 043643 240 NGGTNIVEGLKKGARVLEERRE-------RSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSK 312 (634)
Q Consensus 240 ~GgT~i~~aL~~A~~~l~~~~~-------~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~ 312 (634)
+|||+++.||..|++.|..... ....+.|||||||.++... ....+.+.
T Consensus 76 ~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~-----------------~~~~~~~~------- 131 (176)
T cd01464 76 SGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDL-----------------TAAIERIK------- 131 (176)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchH-----------------HHHHHHHH-------
Confidence 9999999999999999965321 1224579999999987421 11111121
Q ss_pred cccCCCCeeEEEEEccCCCChHHHHHHHhh
Q 043643 313 REAGQPTFPVHTFGFGLEHDSEAMHAIADA 342 (634)
Q Consensus 313 ~~~~~~~i~I~t~G~G~~~d~~~L~~iA~~ 342 (634)
.....++.|++||+|.++|...|+.||..
T Consensus 132 -~~~~~~~~i~~igiG~~~~~~~L~~ia~~ 160 (176)
T cd01464 132 -EARDSKGRIVACAVGPKADLDTLKQITEG 160 (176)
T ss_pred -hhcccCCcEEEEEeccccCHHHHHHHHCC
Confidence 12345899999999999999999999963
No 19
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=99.82 E-value=1.1e-19 Score=172.93 Aligned_cols=160 Identities=33% Similarity=0.547 Sum_probs=126.2
Q ss_pred eEEEEEeCCCCCCc------cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCC----
Q 043643 169 DLVTVLDVSGSMSS------KLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLS---- 238 (634)
Q Consensus 169 dlv~VlD~SgSM~g------kl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~---- 238 (634)
|+|||+|.||||.+ +++.+|.++..+++.++ ++|++|+.|++.....+|++ .++..+.+.++.+.
T Consensus 1 dvv~v~D~SgSM~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~l~~f~~~~~~~~~~t----~~~~~~~~~l~~~~~~~~ 75 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGYDGNRTRIDQAKDALNELLANLP-GDRVGLVSFSDSSRTLSPLT----SDKDELKNALNKLSPQGM 75 (172)
T ss_dssp EEEEEEE-SGGGGTTTSSS-HHHHHHHHHHHHHHHHT-TSEEEEEEESTSCEEEEEEE----SSHHHHHHHHHTHHHHG-
T ss_pred CEEEEEECCcccCCCCCCCcHHHHHHHHHHHHHHHCC-CCEEEEEEeccccccccccc----ccHHHHHHHhhccccccc
Confidence 79999999999996 59999999999999975 88999999999999999987 56777888888764
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCC
Q 043643 239 SNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQP 318 (634)
Q Consensus 239 ~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~ 318 (634)
++|+|++..||..|.+.+.... ...+.|||+|||.++. ...+.+. .....
T Consensus 76 ~~~~t~~~~al~~a~~~~~~~~--~~~~~iv~iTDG~~~~--------------------~~~~~~~--------~~~~~ 125 (172)
T PF13519_consen 76 PGGGTNLYDALQEAAKMLASSD--NRRRAIVLITDGEDNS--------------------SDIEAAK--------ALKQQ 125 (172)
T ss_dssp -SSS--HHHHHHHHHHHHHC-S--SEEEEEEEEES-TTHC--------------------HHHHHHH--------HHHCT
T ss_pred CccCCcHHHHHHHHHHHHHhCC--CCceEEEEecCCCCCc--------------------chhHHHH--------HHHHc
Confidence 4789999999999999997653 4557799999998762 1111111 12357
Q ss_pred CeeEEEEEccCCCCh-HHHHHHHhhcCCeEEEc-CChhhHHHHHHHH
Q 043643 319 TFPVHTFGFGLEHDS-EAMHAIADASGGTFSFI-ETLSILQDAFARC 363 (634)
Q Consensus 319 ~i~I~t~G~G~~~d~-~~L~~iA~~tgG~~~~i-~~~~~l~~~f~~~ 363 (634)
+++||+||+|.+.+. ..|+.||+.+||.|+.+ .+..+|.++|.++
T Consensus 126 ~i~i~~v~~~~~~~~~~~l~~la~~tgG~~~~~~~~~~~l~~~~~~I 172 (172)
T PF13519_consen 126 GITIYTVGIGSDSDANEFLQRLAEATGGRYFHVDNDPEDLDDAFQQI 172 (172)
T ss_dssp TEEEEEEEES-TT-EHHHHHHHHHHTEEEEEEE-SSSHHHHHHHHH-
T ss_pred CCeEEEEEECCCccHHHHHHHHHHhcCCEEEEecCCHHHHHHHHhcC
Confidence 899999999988764 78999999999999999 6889999999874
No 20
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=99.81 E-value=5.9e-19 Score=171.60 Aligned_cols=159 Identities=14% Similarity=0.233 Sum_probs=121.3
Q ss_pred CCCCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcCC---------CCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHH
Q 043643 164 DRAPIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLGS---------ADRLSIVIFSSVARRIFPLQRMTDSGRENAIRA 233 (634)
Q Consensus 164 ~r~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~~---------~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~ 233 (634)
...++|||||||.|+||.. +++.+|+.+..++..+.- ++||+||+|++.+++.+||+.. .++..+.+.
T Consensus 16 ~~~~~DivfvlD~S~Sm~~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~~~~~L~d~--~~~~~~~~a 93 (193)
T cd01477 16 KNLWLDIVFVVDNSKGMTQGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNATVVADLNDL--QSFDDLYSQ 93 (193)
T ss_pred ccceeeEEEEEeCCCCcchhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceEEEEecccc--cCHHHHHHH
Confidence 5578999999999999987 999999999888776543 4799999999999999999843 345666666
Q ss_pred Hhc----CCCCCCCcHHHHHHHHHHHHHhh---ccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchh
Q 043643 234 INT----LSSNGGTNIVEGLKKGARVLEER---RERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPS 306 (634)
Q Consensus 234 I~~----l~~~GgT~i~~aL~~A~~~l~~~---~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~ 306 (634)
|+. +..+|||+++.||..|.++|... ..++..+.|||||||..+.+.. +.....+
T Consensus 94 i~~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~~~--------------~~~~~a~---- 155 (193)
T cd01477 94 IQGSLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEGSN--------------DPRPIAA---- 155 (193)
T ss_pred HHHHhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCCCC--------------CHHHHHH----
Confidence 663 45678999999999999999753 1234567799999986653311 1111111
Q ss_pred hhhccccccCCCCeeEEEEEccCCCChHHHHHHHhhcCCeEEE
Q 043643 307 SICLSKREAGQPTFPVHTFGFGLEHDSEAMHAIADASGGTFSF 349 (634)
Q Consensus 307 ~i~~~~~~~~~~~i~I~t~G~G~~~d~~~L~~iA~~tgG~~~~ 349 (634)
.++..||.||+||+|.+.|...|.+|++...+.|+|
T Consensus 156 -------~l~~~GI~i~tVGiG~~~d~~~~~~L~~ias~~~~~ 191 (193)
T cd01477 156 -------RLKSTGIAIITVAFTQDESSNLLDKLGKIASPGMNF 191 (193)
T ss_pred -------HHHHCCCEEEEEEeCCCCCHHHHHHHHHhcCCCCCC
Confidence 234679999999999998888888898887655543
No 21
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=99.81 E-value=7.8e-19 Score=170.50 Aligned_cols=168 Identities=20% Similarity=0.280 Sum_probs=128.1
Q ss_pred ceEEEEEeCCCCCCc-c-HHHHHHHHHHHHHhcC---CCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHh---c-CC
Q 043643 168 IDLVTVLDVSGSMSS-K-LPLLKRAVHFIIQNLG---SADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAIN---T-LS 238 (634)
Q Consensus 168 ~dlv~VlD~SgSM~g-k-l~~~K~al~~li~~L~---~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~---~-l~ 238 (634)
+||+||||.||||.+ . ++.+|+++..+++.+. ++.|++||+|++.+..++|++.....++..+...++ . ..
T Consensus 1 ~Dv~~vlD~SgSm~~~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~~ 80 (186)
T cd01471 1 LDLYLLVDGSGSIGYSNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKELIRLSSPNSTNKDLALNAIRALLSLYY 80 (186)
T ss_pred CcEEEEEeCCCCccchhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCceEEEECCCccccchHHHHHHHHHHHhCcC
Confidence 589999999999998 5 9999999999999885 467999999999999999998665556666333333 3 35
Q ss_pred CCCCCcHHHHHHHHHHHHHhh--ccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccC
Q 043643 239 SNGGTNIVEGLKKGARVLEER--RERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAG 316 (634)
Q Consensus 239 ~~GgT~i~~aL~~A~~~l~~~--~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~ 316 (634)
++|+|+++.||..|.+.+... ..++..+.|||+|||.++.... .+. ... ..+
T Consensus 81 ~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~-----------------~~~-~a~--------~l~ 134 (186)
T cd01471 81 PNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDSKFR-----------------TLK-EAR--------KLR 134 (186)
T ss_pred CCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCCCcc-----------------hhH-HHH--------HHH
Confidence 789999999999999999752 2234567899999999874311 111 111 123
Q ss_pred CCCeeEEEEEccCCCChHHHHHHHhhc-C---CeEEEcCChhhHHHHHH
Q 043643 317 QPTFPVHTFGFGLEHDSEAMHAIADAS-G---GTFSFIETLSILQDAFA 361 (634)
Q Consensus 317 ~~~i~I~t~G~G~~~d~~~L~~iA~~t-g---G~~~~i~~~~~l~~~f~ 361 (634)
..++.|++||||.+.|...|+.||... + -..|...++++|...+.
T Consensus 135 ~~gv~v~~igiG~~~d~~~l~~ia~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (186)
T cd01471 135 ERGVIIAVLGVGQGVNHEENRSLVGCDPDDSPCPLYLQSSWSEVQNVIK 183 (186)
T ss_pred HCCCEEEEEEeehhhCHHHHHHhcCCCCCCCCCCeeecCCHHHHHHHhh
Confidence 468999999999999999999999865 1 24566778887776654
No 22
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=99.80 E-value=1e-18 Score=174.87 Aligned_cols=173 Identities=22% Similarity=0.339 Sum_probs=135.1
Q ss_pred CCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCCC-C
Q 043643 166 APIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLG---SADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLSS-N 240 (634)
Q Consensus 166 ~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~---~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~~-~ 240 (634)
.|+||+||||.||||.+ +++.+|.++..+++.|. ..+||+||+|++.+++++||+.. .++..+.+.|+.+.. +
T Consensus 1 ~~~DlvfllD~S~Sm~~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~~~~~l~~~--~~~~~l~~~i~~i~~~~ 78 (224)
T cd01475 1 GPTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRF--KSKADLKRAVRRMEYLE 78 (224)
T ss_pred CCccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCceeEEeccccc--CCHHHHHHHHHhCcCCC
Confidence 47999999999999998 99999999999999885 36799999999999999999854 346778888888865 5
Q ss_pred CCCcHHHHHHHHHHHHHhh-c--cC---CCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccc
Q 043643 241 GGTNIVEGLKKGARVLEER-R--ER---SPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKRE 314 (634)
Q Consensus 241 GgT~i~~aL~~A~~~l~~~-~--~~---~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~ 314 (634)
|+|+++.||..+.+.+-.. . .+ +..+.|||||||.++.. +..... .
T Consensus 79 ~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~~--------------------~~~~a~--------~ 130 (224)
T cd01475 79 TGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDD--------------------VSEVAA--------K 130 (224)
T ss_pred CCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCccc--------------------HHHHHH--------H
Confidence 7899999999998765321 1 11 12567899999987531 111111 1
Q ss_pred cCCCCeeEEEEEccCCCChHHHHHHHhhcC-CeEEEcCChhhHHHHHHHHhhcccc
Q 043643 315 AGQPTFPVHTFGFGLEHDSEAMHAIADASG-GTFSFIETLSILQDAFARCIGGLLS 369 (634)
Q Consensus 315 ~~~~~i~I~t~G~G~~~d~~~L~~iA~~tg-G~~~~i~~~~~l~~~f~~~l~~l~s 369 (634)
++..+|.||+||+|. .+...|+.||..++ +.+|.+.+.+.|......+.+.+..
T Consensus 131 lk~~gv~i~~VgvG~-~~~~~L~~ias~~~~~~~f~~~~~~~l~~~~~~l~~~~C~ 185 (224)
T cd01475 131 ARALGIEMFAVGVGR-ADEEELREIASEPLADHVFYVEDFSTIEELTKKFQGKICV 185 (224)
T ss_pred HHHCCcEEEEEeCCc-CCHHHHHHHhCCCcHhcEEEeCCHHHHHHHhhhcccccCc
Confidence 245789999999997 67899999998764 5778899999888777776665553
No 23
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=99.79 E-value=3.7e-18 Score=164.47 Aligned_cols=162 Identities=20% Similarity=0.320 Sum_probs=127.5
Q ss_pred ceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcCC---CCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCC-CCCC
Q 043643 168 IDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLGS---ADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLS-SNGG 242 (634)
Q Consensus 168 ~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~~---~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~-~~Gg 242 (634)
+||+||||.||||.. .++.+|..+..+++.|.. ..||+||+|++.++..++|+... +...+.++|+.+. .+|+
T Consensus 1 ~Di~fvlD~S~S~~~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~~~~~l~~~~--~~~~~~~~i~~~~~~~g~ 78 (177)
T cd01469 1 MDIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFRTEFTLNEYR--TKEEPLSLVKHISQLLGL 78 (177)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCceeEEEecCccC--CHHHHHHHHHhCccCCCC
Confidence 589999999999998 999999999999998874 68999999999999999998543 4567788888874 5678
Q ss_pred CcHHHHHHHHHHHHHh---hccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCC
Q 043643 243 TNIVEGLKKGARVLEE---RRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPT 319 (634)
Q Consensus 243 T~i~~aL~~A~~~l~~---~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~ 319 (634)
|+++.||..|.+.+-. ...++..+.+||||||.++.+.. . .... . .++..+
T Consensus 79 T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~~--------------~-~~~~---~--------~~k~~g 132 (177)
T cd01469 79 TNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDPL--------------L-KDVI---P--------QAEREG 132 (177)
T ss_pred ccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCccc--------------c-HHHH---H--------HHHHCC
Confidence 9999999999998732 12235567899999999885421 0 1111 1 123579
Q ss_pred eeEEEEEccCCCC----hHHHHHHHhhcCC-eEEEcCChhhHH
Q 043643 320 FPVHTFGFGLEHD----SEAMHAIADASGG-TFSFIETLSILQ 357 (634)
Q Consensus 320 i~I~t~G~G~~~d----~~~L~~iA~~tgG-~~~~i~~~~~l~ 357 (634)
+.||+||+|.+.+ ...|+.||..+++ .+|.+.|.++|.
T Consensus 133 v~v~~Vgvg~~~~~~~~~~~L~~ias~p~~~h~f~~~~~~~l~ 175 (177)
T cd01469 133 IIRYAIGVGGHFQRENSREELKTIASKPPEEHFFNVTDFAALK 175 (177)
T ss_pred cEEEEEEecccccccccHHHHHHHhcCCcHHhEEEecCHHHhc
Confidence 9999999998765 5899999998865 566678877664
No 24
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.78 E-value=8.3e-18 Score=187.90 Aligned_cols=172 Identities=21% Similarity=0.280 Sum_probs=135.3
Q ss_pred CCCCCCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHh-cCCCCeEEEEEeCCC-cEEEEcCcccCHHHHHHHHHHHhcCC
Q 043643 162 DADRAPIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQN-LGSADRLSIVIFSSV-ARRIFPLQRMTDSGRENAIRAINTLS 238 (634)
Q Consensus 162 ~~~r~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~-L~~~drvsIV~Fs~~-a~~~~pl~~~t~~~~~~~~~~I~~l~ 238 (634)
...+.+..++||||+||||.+ +|..+|.++..++.. +.+.|+|+||+|++. +.+++|++ .+...+...|+.|.
T Consensus 396 ~~~~~~~~vvfvvD~SGSM~~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a~~~lppT----~~~~~~~~~L~~l~ 471 (584)
T PRK13406 396 FKQRSETTTIFVVDASGSAALHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGAELLLPPT----RSLVRAKRSLAGLP 471 (584)
T ss_pred hhccCCccEEEEEECCCCCcHhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCceeEEcCCC----cCHHHHHHHHhcCC
Confidence 456778999999999999988 999999999888854 688999999999765 88889988 36778889999999
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCC-CCHHHHHhhchhhhhccccccCC
Q 043643 239 SNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIP-SNELAYLNLLPSSICLSKREAGQ 317 (634)
Q Consensus 239 ~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~-~~~~~~~~lv~~~i~~~~~~~~~ 317 (634)
++|||+|+.||..|++.+.....++..+.|||||||.+|.+.... .+. ....+...+.. ....
T Consensus 472 ~gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~--------~~~~~~~~~~~~~a~--------~~~~ 535 (584)
T PRK13406 472 GGGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGT--------AGRAQAEEDALAAAR--------ALRA 535 (584)
T ss_pred CCCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCcccc--------ccccchhhHHHHHHH--------HHHh
Confidence 999999999999999998776555556789999999999754210 000 00111111111 2345
Q ss_pred CCeeEEEEEccCCCChHHHHHHHhhcCCeEEEcCChh
Q 043643 318 PTFPVHTFGFGLEHDSEAMHAIADASGGTFSFIETLS 354 (634)
Q Consensus 318 ~~i~I~t~G~G~~~d~~~L~~iA~~tgG~~~~i~~~~ 354 (634)
.+|.+++|++|... ...++.||+.+||.||.+++.+
T Consensus 536 ~gi~~~vId~g~~~-~~~~~~LA~~~gg~y~~l~~~~ 571 (584)
T PRK13406 536 AGLPALVIDTSPRP-QPQARALAEAMGARYLPLPRAD 571 (584)
T ss_pred cCCeEEEEecCCCC-cHHHHHHHHhcCCeEEECCCCC
Confidence 78999999999654 4679999999999999999764
No 25
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=99.77 E-value=1.2e-17 Score=162.75 Aligned_cols=175 Identities=20% Similarity=0.265 Sum_probs=130.9
Q ss_pred ceEEEEEeCCCCCCc-cHH-HHHHHHHHHHHhcC---CCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCC----
Q 043643 168 IDLVTVLDVSGSMSS-KLP-LLKRAVHFIIQNLG---SADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLS---- 238 (634)
Q Consensus 168 ~dlv~VlD~SgSM~g-kl~-~~K~al~~li~~L~---~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~---- 238 (634)
.||+||||.|+||.. .+. .+|..+..+++.|. .++||+||.|++.++..+||+.....++..++++|+.+.
T Consensus 1 ~Di~fllD~S~Si~~~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~ 80 (192)
T cd01473 1 YDLTLILDESASIGYSNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKNRDVVPFSDEERYDKNELLKKINDLKNSYR 80 (192)
T ss_pred CcEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCceeEEecCcccccCHHHHHHHHHHHHhccC
Confidence 589999999999987 576 48999999999886 468999999999999999998655556778888777663
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcc--CCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccC
Q 043643 239 SNGGTNIVEGLKKGARVLEERRE--RSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAG 316 (634)
Q Consensus 239 ~~GgT~i~~aL~~A~~~l~~~~~--~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~ 316 (634)
.+|+|+++.||..|.+.+..... ++..+.+||||||.++.... ..+..... .++
T Consensus 81 ~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~~----------------~~~~~~a~--------~lk 136 (192)
T cd01473 81 SGGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSASK----------------KELQDISL--------LYK 136 (192)
T ss_pred CCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcch----------------hhHHHHHH--------HHH
Confidence 47899999999999998854321 23467799999999874311 11221111 234
Q ss_pred CCCeeEEEEEccCCCChHHHHHHHhhc--CC--eEEEcCChhhHHHHHHHHhhcc
Q 043643 317 QPTFPVHTFGFGLEHDSEAMHAIADAS--GG--TFSFIETLSILQDAFARCIGGL 367 (634)
Q Consensus 317 ~~~i~I~t~G~G~~~d~~~L~~iA~~t--gG--~~~~i~~~~~l~~~f~~~l~~l 367 (634)
..||.|++||+|. .+...|+.||... .+ .+++..++++|......+...+
T Consensus 137 ~~gV~i~~vGiG~-~~~~el~~ia~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~i 190 (192)
T cd01473 137 EENVKLLVVGVGA-ASENKLKLLAGCDINNDNCPNVIKTEWNNLNGISKFLTDKI 190 (192)
T ss_pred HCCCEEEEEEecc-ccHHHHHHhcCCCCCCCCCCeEEecchhhHHHHHHHHHhhc
Confidence 6899999999997 4678899999752 22 2445445988887777665544
No 26
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=99.76 E-value=1.8e-17 Score=180.15 Aligned_cols=188 Identities=18% Similarity=0.223 Sum_probs=142.9
Q ss_pred CCCCCCceEEEEEeCCCCCCc--cHHHHHHHHHHHHHhcCC---CCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhc
Q 043643 162 DADRAPIDLVTVLDVSGSMSS--KLPLLKRAVHFIIQNLGS---ADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINT 236 (634)
Q Consensus 162 ~~~r~p~dlv~VlD~SgSM~g--kl~~~K~al~~li~~L~~---~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~ 236 (634)
......+||+||||.|+||.. .++.+|..+..|+..|.. ..+|+|++|++.++.+++++.....+++.++..|..
T Consensus 37 ~vC~~~lDIvFLLD~SgSMg~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r~vfpL~s~~s~Dk~~aL~~I~s 116 (576)
T PTZ00441 37 EVCNEEVDLYLLVDGSGSIGYHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTTELIRLGSGASKDKEQALIIVKS 116 (576)
T ss_pred ccccCCceEEEEEeCCCccCCccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCceEEEecCCCccccHHHHHHHHHH
Confidence 455679999999999999976 568999999999998852 346677999999999999985544445556655554
Q ss_pred ----CCCCCCCcHHHHHHHHHHHHHhhc-cCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhcc
Q 043643 237 ----LSSNGGTNIVEGLKKGARVLEERR-ERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLS 311 (634)
Q Consensus 237 ----l~~~GgT~i~~aL~~A~~~l~~~~-~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~ 311 (634)
+.++|+|+++.||..+.+.+..+. ..+..+.|||||||.++... +....+.
T Consensus 117 L~~~~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns~~------------------dvleaAq------ 172 (576)
T PTZ00441 117 LRKTYLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNSKY------------------RALEESR------ 172 (576)
T ss_pred HHhhccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCCcc------------------cHHHHHH------
Confidence 467899999999999999987542 23456789999999976321 1111111
Q ss_pred ccccCCCCeeEEEEEccCCCChHHHHHHHh----hcCCeEEEcCChhhHHHHHHHHhhccccceeeee
Q 043643 312 KREAGQPTFPVHTFGFGLEHDSEAMHAIAD----ASGGTFSFIETLSILQDAFARCIGGLLSVVSQDV 375 (634)
Q Consensus 312 ~~~~~~~~i~I~t~G~G~~~d~~~L~~iA~----~tgG~~~~i~~~~~l~~~f~~~l~~l~s~va~~~ 375 (634)
..+..++.|++||+|.+.+..+|+.||. .++|.||+..++.+|..+...++..+...|-++.
T Consensus 173 --~LR~~GVeI~vIGVG~g~n~e~LrlIAgC~p~~g~c~~Y~vadf~eL~~ivk~LikkVC~eve~~a 238 (576)
T PTZ00441 173 --KLKDRNVKLAVIGIGQGINHQFNRLLAGCRPREGKCKFYSDADWEEAKNLIKPFIAKVCTEVERTA 238 (576)
T ss_pred --HHHHCCCEEEEEEeCCCcCHHHHHHHhccCCCCCCCceEEeCCHHHHHHHHHHHHHHhcccccccc
Confidence 1235799999999999999999999993 4567899999999888888888777766655443
No 27
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.76 E-value=1.2e-17 Score=158.76 Aligned_cols=154 Identities=18% Similarity=0.229 Sum_probs=120.5
Q ss_pred ceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCC-CCCC
Q 043643 168 IDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLG---SADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLS-SNGG 242 (634)
Q Consensus 168 ~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~---~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~-~~Gg 242 (634)
.|++||||.||||.+ .+..+|.++..+++.+. +++|++||+|+++++..+|++.. .+++.+.+.|..+. .+|+
T Consensus 1 ~Dv~~vlD~S~Sm~~~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~~~~~l~~~--~~~~~l~~~l~~~~~~~g~ 78 (164)
T cd01482 1 ADIVFLVDGSWSIGRSNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTEFDLNAY--TSKEDVLAAIKNLPYKGGN 78 (164)
T ss_pred CCEEEEEeCCCCcChhhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCeeEEEecCCC--CCHHHHHHHHHhCcCCCCC
Confidence 489999999999998 99999999999998874 57999999999999999999854 34678888898886 6889
Q ss_pred CcHHHHHHHHHHHHHhh---ccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCC
Q 043643 243 TNIVEGLKKGARVLEER---RERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPT 319 (634)
Q Consensus 243 T~i~~aL~~A~~~l~~~---~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~ 319 (634)
|+++.||..+.+.+... ..++..+.|||||||.++.. +..... .++..+
T Consensus 79 T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~~--------------------~~~~a~--------~lk~~g 130 (164)
T cd01482 79 TRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQDD--------------------VELPAR--------VLRNLG 130 (164)
T ss_pred ChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCch--------------------HHHHHH--------HHHHCC
Confidence 99999999998765332 12345667999999997631 111111 123579
Q ss_pred eeEEEEEccCCCChHHHHHHHhhcCCe-EEEcCC
Q 043643 320 FPVHTFGFGLEHDSEAMHAIADASGGT-FSFIET 352 (634)
Q Consensus 320 i~I~t~G~G~~~d~~~L~~iA~~tgG~-~~~i~~ 352 (634)
|.|++||+|. .+...|.+||..+... .|.+.|
T Consensus 131 i~i~~ig~g~-~~~~~L~~ia~~~~~~~~~~~~d 163 (164)
T cd01482 131 VNVFAVGVKD-ADESELKMIASKPSETHVFNVAD 163 (164)
T ss_pred CEEEEEecCc-CCHHHHHHHhCCCchheEEEcCC
Confidence 9999999996 6688999999987654 454544
No 28
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=99.75 E-value=6.2e-17 Score=158.28 Aligned_cols=171 Identities=22% Similarity=0.294 Sum_probs=136.2
Q ss_pred CCCCCCceEEEEEeCCCCCCc--cHHHHHHHHHHHH-HhcCCCCeEEEEEeC-CCcEEEEcCcccCHHHHHHHHHHHhcC
Q 043643 162 DADRAPIDLVTVLDVSGSMSS--KLPLLKRAVHFII-QNLGSADRLSIVIFS-SVARRIFPLQRMTDSGRENAIRAINTL 237 (634)
Q Consensus 162 ~~~r~p~dlv~VlD~SgSM~g--kl~~~K~al~~li-~~L~~~drvsIV~Fs-~~a~~~~pl~~~t~~~~~~~~~~I~~l 237 (634)
...+....||||+|.||||.. ||+.+|-++..|+ +.....|+|++|+|. +++.+++|.| .+.+.+.++|..|
T Consensus 73 r~~r~g~lvvfvVDASgSM~~~~Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~~A~lll~pT----~sv~~~~~~L~~l 148 (261)
T COG1240 73 REGRAGNLIVFVVDASGSMAARRRMAAAKGAALSLLRDAYQRRDKVAVIAFRGEKAELLLPPT----SSVELAERALERL 148 (261)
T ss_pred hccCcCCcEEEEEeCcccchhHHHHHHHHHHHHHHHHHHHHccceEEEEEecCCcceEEeCCc----ccHHHHHHHHHhC
Confidence 457788999999999999999 8999999886655 566779999999999 7799999999 6789999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhcc--CCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhcccccc
Q 043643 238 SSNGGTNIVEGLKKGARVLEERRE--RSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREA 315 (634)
Q Consensus 238 ~~~GgT~i~~aL~~A~~~l~~~~~--~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~ 315 (634)
.++|+|.|.+||..|++++..... ++....+|+||||.+|.+.+.+ ...+.... +...
T Consensus 149 ~~GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~------------~~~e~~~~--------a~~~ 208 (261)
T COG1240 149 PTGGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLG------------PKAETLEA--------ASKL 208 (261)
T ss_pred CCCCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCc------------hHHHHHHH--------HHHH
Confidence 999999999999999999976543 4566789999999999765432 01121111 1123
Q ss_pred CCCCeeEEEEEccCC-CChHHHHHHHhhcCCeEEEcCChhhH
Q 043643 316 GQPTFPVHTFGFGLE-HDSEAMHAIADASGGTFSFIETLSIL 356 (634)
Q Consensus 316 ~~~~i~I~t~G~G~~-~d~~~L~~iA~~tgG~~~~i~~~~~l 356 (634)
...++++.+|..... ....+.+.||...||.|+++++..+.
T Consensus 209 ~~~g~~~lvid~e~~~~~~g~~~~iA~~~Gg~~~~L~~l~~~ 250 (261)
T COG1240 209 RLRGIQLLVIDTEGSEVRLGLAEEIARASGGEYYHLDDLSDD 250 (261)
T ss_pred hhcCCcEEEEecCCccccccHHHHHHHHhCCeEEecccccch
Confidence 457787778877543 45568899999999999999987654
No 29
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=99.74 E-value=5.3e-17 Score=154.05 Aligned_cols=151 Identities=23% Similarity=0.388 Sum_probs=116.8
Q ss_pred ceEEEEEeCCCCCCccHHHHHHHHHHHHHhcCC---CCeEEEEEeCC--CcEEEEcCcccCHHHHHHHHHHHhcCCC-CC
Q 043643 168 IDLVTVLDVSGSMSSKLPLLKRAVHFIIQNLGS---ADRLSIVIFSS--VARRIFPLQRMTDSGRENAIRAINTLSS-NG 241 (634)
Q Consensus 168 ~dlv~VlD~SgSM~gkl~~~K~al~~li~~L~~---~drvsIV~Fs~--~a~~~~pl~~~t~~~~~~~~~~I~~l~~-~G 241 (634)
+|++||||+|+||.+++...|+.+..++..|.. .+|++||.|++ .+.+.++++.. .++..+.+.|+.+.+ +|
T Consensus 1 ldv~~llD~S~Sm~~~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~l~~~--~~~~~l~~~i~~l~~~gg 78 (163)
T cd01476 1 LDLLFVLDSSGSVRGKFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQRVRFNLPKH--NDGEELLEKVDNLRFIGG 78 (163)
T ss_pred CCEEEEEeCCcchhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceEEEecCCCC--CCHHHHHHHHHhCccCCC
Confidence 589999999999988888889999999988864 89999999999 67777888743 346788999999975 67
Q ss_pred CCcHHHHHHHHHHHHHhhc--cCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCC
Q 043643 242 GTNIVEGLKKGARVLEERR--ERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPT 319 (634)
Q Consensus 242 gT~i~~aL~~A~~~l~~~~--~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~ 319 (634)
+|+++.||..|.+.+.... .++..+.|||+|||.++.+. ....+.+. ...+
T Consensus 79 ~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~-----------------~~~~~~l~----------~~~~ 131 (163)
T cd01476 79 TTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHDDP-----------------EKQARILR----------AVPN 131 (163)
T ss_pred CccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCCch-----------------HHHHHHHh----------hcCC
Confidence 8999999999999996321 23444789999999887431 11211111 1378
Q ss_pred eeEEEEEccCC--CChHHHHHHHhhcCCeE
Q 043643 320 FPVHTFGFGLE--HDSEAMHAIADASGGTF 347 (634)
Q Consensus 320 i~I~t~G~G~~--~d~~~L~~iA~~tgG~~ 347 (634)
+.||+||+|.. .|...|..||......|
T Consensus 132 v~v~~vg~g~~~~~~~~~L~~ia~~~~~~~ 161 (163)
T cd01476 132 IETFAVGTGDPGTVDTEELHSITGNEDHIF 161 (163)
T ss_pred CEEEEEECCCccccCHHHHHHHhCCCcccc
Confidence 99999999998 88889999987655433
No 30
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.74 E-value=8e-17 Score=153.47 Aligned_cols=165 Identities=18% Similarity=0.065 Sum_probs=119.7
Q ss_pred eEEEEEeCCCCC------Cc----cHHHHHHHHHHHHHh--cCCCCeEEEEEeCCCcEEEEcCccc---C--HHHHHHHH
Q 043643 169 DLVTVLDVSGSM------SS----KLPLLKRAVHFIIQN--LGSADRLSIVIFSSVARRIFPLQRM---T--DSGRENAI 231 (634)
Q Consensus 169 dlv~VlD~SgSM------~g----kl~~~K~al~~li~~--L~~~drvsIV~Fs~~a~~~~pl~~~---t--~~~~~~~~ 231 (634)
.|+++||+|||| .| +|+.+|..+..|++. -..+||++ |++.+....|++-- + ....+.+.
T Consensus 2 ~l~lavDlSgSM~~~~~~dg~~~~RL~a~k~v~~~f~~f~~~r~~DriG---~~g~~~~~~~lt~d~p~t~d~~~~~~l~ 78 (191)
T cd01455 2 RLKLVVDVSGSMYRFNGYDGRLDRSLEAVVMVMEAFDGFEDKIQYDIIG---HSGDGPCVPFVKTNHPPKNNKERLETLK 78 (191)
T ss_pred ceEEEEECcHhHHHHhccCCccccHHHHHHHHHHHHHHHHHhCccceee---ecCcccccCccccccCcccchhHHHHHH
Confidence 489999999999 23 899999998888742 24689999 45544333332211 1 12235677
Q ss_pred HHHhcCCC---CCCCcHHHHHHHHHHHHH-hhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHH-Hhhchh
Q 043643 232 RAINTLSS---NGGTNIVEGLKKGARVLE-ERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAY-LNLLPS 306 (634)
Q Consensus 232 ~~I~~l~~---~GgT~i~~aL~~A~~~l~-~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~-~~lv~~ 306 (634)
..++.++. +.+|. +||..|++.|. .... ..+.|||||||.+|.+.-.| .+. ..+
T Consensus 79 ~~l~~~q~g~ag~~Ta--dAi~~av~rl~~~~~a--~~kvvILLTDG~n~~~~i~P--------------~~aAa~l--- 137 (191)
T cd01455 79 MMHAHSQFCWSGDHTV--EATEFAIKELAAKEDF--DEAIVIVLSDANLERYGIQP--------------KKLADAL--- 137 (191)
T ss_pred HHHHhcccCccCccHH--HHHHHHHHHHHhcCcC--CCcEEEEEeCCCcCCCCCCh--------------HHHHHHH---
Confidence 77777654 34666 99999999996 5443 34569999999987654332 121 111
Q ss_pred hhhccccccCCCCeeEEEEEccCCCChHHHHHHHhhcCCeEEEcCChhhHHHHHHHHhhc
Q 043643 307 SICLSKREAGQPTFPVHTFGFGLEHDSEAMHAIADASGGTFSFIETLSILQDAFARCIGG 366 (634)
Q Consensus 307 ~i~~~~~~~~~~~i~I~t~G~G~~~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f~~~l~~ 366 (634)
++..+|+|||||+|.. |...|+.||+.+||.||.+.|..+|.+++.+++..
T Consensus 138 --------A~~~gV~iytIgiG~~-d~~~l~~iA~~tgG~~F~A~d~~~L~~iy~~I~~~ 188 (191)
T cd01455 138 --------AREPNVNAFVIFIGSL-SDEADQLQRELPAGKAFVCMDTSELPHIMQQIFTS 188 (191)
T ss_pred --------HHhCCCEEEEEEecCC-CHHHHHHHHhCCCCcEEEeCCHHHHHHHHHHHHHH
Confidence 2468999999999973 67889999999999999999999999999998764
No 31
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.73 E-value=3.6e-17 Score=153.92 Aligned_cols=152 Identities=22% Similarity=0.332 Sum_probs=122.6
Q ss_pred ceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCCCC-C-
Q 043643 168 IDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLG---SADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLSSN-G- 241 (634)
Q Consensus 168 ~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~---~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~~~-G- 241 (634)
+||+||||+||||.+ +++.++.++..++..+. ++++++|++|++.+...++++... ++..+.+.|+.+... |
T Consensus 1 ~di~~llD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~ 78 (161)
T cd01450 1 LDIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEFSLNDYK--SKDDLLKAVKNLKYLGGG 78 (161)
T ss_pred CcEEEEEeCCCCcCHHHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCceEEEECCCCC--CHHHHHHHHHhcccCCCC
Confidence 589999999999999 99999999999999886 489999999999999999988554 477888888887543 3
Q ss_pred CCcHHHHHHHHHHHHHhhc--cCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCC
Q 043643 242 GTNIVEGLKKGARVLEERR--ERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPT 319 (634)
Q Consensus 242 gT~i~~aL~~A~~~l~~~~--~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~ 319 (634)
+|++..||..+.+.+.... ..+..+.|||+|||.++.+. ...+.+. . .+..+
T Consensus 79 ~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~~------------------~~~~~~~-~-------~~~~~ 132 (161)
T cd01450 79 GTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDGG------------------DPKEAAA-K-------LKDEG 132 (161)
T ss_pred CccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCCc------------------chHHHHH-H-------HHHCC
Confidence 8999999999999997654 24566789999999988532 1122221 1 23468
Q ss_pred eeEEEEEccCCCChHHHHHHHhhcCCeEE
Q 043643 320 FPVHTFGFGLEHDSEAMHAIADASGGTFS 348 (634)
Q Consensus 320 i~I~t~G~G~~~d~~~L~~iA~~tgG~~~ 348 (634)
++|++||+|. .+...|+.||..+++.|+
T Consensus 133 v~v~~i~~g~-~~~~~l~~la~~~~~~~~ 160 (161)
T cd01450 133 IKVFVVGVGP-ADEEELREIASCPSERHV 160 (161)
T ss_pred CEEEEEeccc-cCHHHHHHHhCCCCCCcc
Confidence 9999999998 889999999999855544
No 32
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.73 E-value=8.5e-17 Score=181.49 Aligned_cols=177 Identities=19% Similarity=0.307 Sum_probs=133.2
Q ss_pred CCCCCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHh-cCCCCeEEEEEeCCC-cEEEEcCcccCHHHHHHHHHHHhcCCC
Q 043643 163 ADRAPIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQN-LGSADRLSIVIFSSV-ARRIFPLQRMTDSGRENAIRAINTLSS 239 (634)
Q Consensus 163 ~~r~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~-L~~~drvsIV~Fs~~-a~~~~pl~~~t~~~~~~~~~~I~~l~~ 239 (634)
..+....++||||.||||.+ ||..+|.++..++.. +.+.|+|+||+|++. +..++|++ .++..+.+.|+.+.+
T Consensus 403 ~~~~~~~v~fvvD~SGSM~~~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a~~~lp~t----~~~~~~~~~L~~l~~ 478 (589)
T TIGR02031 403 RRKSGRLLIFVVDASGSAAVARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAAEVLLPPS----RSVEQAKRRLDVLPG 478 (589)
T ss_pred ccccCceEEEEEECCCCCChHHHHHHHHHHHHHHHhhccCCCEEEEEEECCCCceEECCCC----CCHHHHHHHHhcCCC
Confidence 45567789999999999988 999999999998875 457899999999876 47777876 457778889999999
Q ss_pred CCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCC-CCHHHHHhhchhhhhccccccCCC
Q 043643 240 NGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIP-SNELAYLNLLPSSICLSKREAGQP 318 (634)
Q Consensus 240 ~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~-~~~~~~~~lv~~~i~~~~~~~~~~ 318 (634)
+|+|+++.||..|++.+...........|||||||.+|.+...... +. ..+. ....++..+.. .....
T Consensus 479 gGgTpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~--~~-~~~~~~~~~~~~~~a~--------~~~~~ 547 (589)
T TIGR02031 479 GGGTPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPE--SI-KADREQAAEEALALAR--------KIREA 547 (589)
T ss_pred CCCCcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCcccc--cc-cccchhHHHHHHHHHH--------HHHhc
Confidence 9999999999999999976544455578999999999976431000 00 0000 00112111111 23457
Q ss_pred CeeEEEEEccCCC-ChHHHHHHHhhcCCeEEEcCChh
Q 043643 319 TFPVHTFGFGLEH-DSEAMHAIADASGGTFSFIETLS 354 (634)
Q Consensus 319 ~i~I~t~G~G~~~-d~~~L~~iA~~tgG~~~~i~~~~ 354 (634)
+|.+.+|++|... +..+++.||+..||.||++++.+
T Consensus 548 gi~~~vid~~~~~~~~~~~~~lA~~~~g~y~~l~~~~ 584 (589)
T TIGR02031 548 GMPALVIDTAMRFVSTGFAQKLARKMGAHYIYLPNAT 584 (589)
T ss_pred CCeEEEEeCCCCCccchHHHHHHHhcCCcEEeCCCCC
Confidence 8999999999764 45689999999999999999865
No 33
>PF14624 Vwaint: VWA / Hh protein intein-like
Probab=99.72 E-value=1.4e-18 Score=141.88 Aligned_cols=52 Identities=56% Similarity=0.708 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHH-HHHHHhhchHHHhhhchhhhhhhhhhhhhhhhcccCCchh
Q 043643 535 DVLCNWLEAELR-EIRERMASMDLYERTGRAYLLSGLSSHSWQRATTRGDTTQ 586 (634)
Q Consensus 535 d~~~~~L~~eL~-e~~~~~~~~~~y~~~G~~y~~s~~ssH~~Qr~~~~g~~~~ 586 (634)
|++|.+|.+||. |++++|++++.|++||||||+|+++||.|||||+|||++.
T Consensus 1 D~~~~~L~~eL~~qi~~a~~~~~~y~~~Gr~YllS~~ssH~~Qr~~s~~d~g~ 53 (80)
T PF14624_consen 1 DPLCQSLMAELRGQISEAMSSREYYERWGRHYLLSLLSSHSRQRCNSFKDPGP 53 (80)
T ss_pred CHHHHHHHHHHHHHHHHHHcCHHHHHHhhHHHHHHHHHHHHHHHhhhcCCCcc
Confidence 678999999999 9999999999999999999999999999999999999954
No 34
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=99.71 E-value=2.8e-16 Score=150.92 Aligned_cols=146 Identities=23% Similarity=0.308 Sum_probs=105.6
Q ss_pred eEEEEEeCCCCCCc--cHHHHHHHHHHHHHhcCC-CCeEEEEEeCCCc--E---EEEcCcccCHHHHHHHHHHHhcCCCC
Q 043643 169 DLVTVLDVSGSMSS--KLPLLKRAVHFIIQNLGS-ADRLSIVIFSSVA--R---RIFPLQRMTDSGRENAIRAINTLSSN 240 (634)
Q Consensus 169 dlv~VlD~SgSM~g--kl~~~K~al~~li~~L~~-~drvsIV~Fs~~a--~---~~~pl~~~t~~~~~~~~~~I~~l~~~ 240 (634)
.++||||+||||.+ |++.+|+++..++..|.. +|+++|++|++.+ . .+++..+.+......+...|..+.++
T Consensus 2 ~v~~llD~SgSM~~~~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (174)
T cd01454 2 AVTLLLDLSGSMRSDRRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIKIKDFDESLHERARKRLAALSPG 81 (174)
T ss_pred EEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEEecCcccccchhHHHHHHccCCC
Confidence 58999999999999 999999999999998885 9999999999984 2 23332222222234567788899999
Q ss_pred CCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCCe
Q 043643 241 GGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPTF 320 (634)
Q Consensus 241 GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i 320 (634)
|+|+++.||..+.+.+..+. ...+.|||||||.++.+.... .......+.+. .+. .+...+|
T Consensus 82 g~T~~~~al~~a~~~l~~~~--~~~~~iiliTDG~~~~~~~~~-----------~~~~~~~~~~~-~~~----~~~~~gi 143 (174)
T cd01454 82 GNTRDGAAIRHAAERLLARP--EKRKILLVISDGEPNDLDYYE-----------GNVFATEDALR-AVI----EARKLGI 143 (174)
T ss_pred CCCcHHHHHHHHHHHHhcCC--CcCcEEEEEeCCCcCcccccC-----------cchhHHHHHHH-HHH----HHHhCCc
Confidence 99999999999999997653 335679999999998653211 00001111110 011 2346799
Q ss_pred eEEEEEccCCCC
Q 043643 321 PVHTFGFGLEHD 332 (634)
Q Consensus 321 ~I~t~G~G~~~d 332 (634)
.+|+||+|.+..
T Consensus 144 ~v~~igig~~~~ 155 (174)
T cd01454 144 EVFGITIDRDAT 155 (174)
T ss_pred EEEEEEecCccc
Confidence 999999999875
No 35
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=99.68 E-value=4e-16 Score=149.45 Aligned_cols=166 Identities=28% Similarity=0.400 Sum_probs=127.0
Q ss_pred eEEEEEeCCCCCCc-cHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHH-hcC-CCCCC
Q 043643 169 DLVTVLDVSGSMSS-KLPLLKRAVHFIIQNL---GSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAI-NTL-SSNGG 242 (634)
Q Consensus 169 dlv~VlD~SgSM~g-kl~~~K~al~~li~~L---~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I-~~l-~~~Gg 242 (634)
||+||||.|+||.+ .++.+|+++..+++.+ .+.+||+||+|++.+..++++.. ......+...+ ..+ ..+|+
T Consensus 1 DivflvD~S~sm~~~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~g~ 78 (178)
T PF00092_consen 1 DIVFLVDTSGSMSGDNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSARVLFSLTD--YQSKNDLLNAINDSIPSSGGG 78 (178)
T ss_dssp EEEEEEE-STTSCHHHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEEEEEETTS--HSSHHHHHHHHHTTGGCCBSS
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHHHhhhccccccccceeeeeccccccccccc--ccccccccccccccccccchh
Confidence 89999999999999 9999999999999966 46889999999999999999983 33456677776 444 56789
Q ss_pred CcHHHHHHHHHHHHHhh---ccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCC
Q 043643 243 TNIVEGLKKGARVLEER---RERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPT 319 (634)
Q Consensus 243 T~i~~aL~~A~~~l~~~---~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~ 319 (634)
|+++.||..+.+.+... ..++..+.|||+|||.++.+... ...... +. ...+
T Consensus 79 t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~~~--------------~~~~~~-----~~------~~~~ 133 (178)
T PF00092_consen 79 TNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSDSP--------------SEEAAN-----LK------KSNG 133 (178)
T ss_dssp B-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHSGH--------------HHHHHH-----HH------HHCT
T ss_pred hhHHHHHhhhhhcccccccccccccccceEEEEeecccCCcch--------------HHHHHH-----HH------HhcC
Confidence 99999999999999754 23466778999999998853211 011111 11 1157
Q ss_pred eeEEEEEccCCCChHHHHHHHhhc--CCeEEEcCChhhHHHHHHH
Q 043643 320 FPVHTFGFGLEHDSEAMHAIADAS--GGTFSFIETLSILQDAFAR 362 (634)
Q Consensus 320 i~I~t~G~G~~~d~~~L~~iA~~t--gG~~~~i~~~~~l~~~f~~ 362 (634)
|.+++||+ ...+...|+.|+..+ .+.++++.+..++.+++.+
T Consensus 134 i~~~~ig~-~~~~~~~l~~la~~~~~~~~~~~~~~~~~l~~~~~~ 177 (178)
T PF00092_consen 134 IKVIAIGI-DNADNEELRELASCPTSEGHVFYLADFSDLSQIIQQ 177 (178)
T ss_dssp EEEEEEEE-SCCHHHHHHHHSHSSTCHHHEEEESSHHHHHHHHHH
T ss_pred cEEEEEec-CcCCHHHHHHHhCCCCCCCcEEEcCCHHHHHHHHhc
Confidence 77777777 467889999999664 4789999999999887765
No 36
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.68 E-value=8e-16 Score=144.28 Aligned_cols=144 Identities=17% Similarity=0.222 Sum_probs=107.4
Q ss_pred eEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCCCCCCCcHH
Q 043643 169 DLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLG-SADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLSSNGGTNIV 246 (634)
Q Consensus 169 dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~-~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~~~GgT~i~ 246 (634)
+++||||+||||.+ |+..+|.++..++..+. ++++++||.|++.. ...++. ...+...+.+.+..+.++|+|+++
T Consensus 2 ~v~illD~SgSM~~~k~~~a~~~~~~l~~~~~~~~~~v~li~F~~~~-~~~~~~--~~~~~~~~~~~l~~~~~~ggT~l~ 78 (152)
T cd01462 2 PVILLVDQSGSMYGAPEEVAKAVALALLRIALAENRDTYLILFDSEF-QTKIVD--KTDDLEEPVEFLSGVQLGGGTDIN 78 (152)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCCc-eEEecC--CcccHHHHHHHHhcCCCCCCcCHH
Confidence 68999999999999 89999999988888776 48999999999993 333333 234566777888888899999999
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCCeeEEEEE
Q 043643 247 EGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPTFPVHTFG 326 (634)
Q Consensus 247 ~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G 326 (634)
.||..+++.+..... ....||++|||.++.. ...+.+... + ....++.||+||
T Consensus 79 ~al~~a~~~l~~~~~--~~~~ivliTDG~~~~~-----------------~~~~~~~~~--~------~~~~~~~v~~~~ 131 (152)
T cd01462 79 KALRYALELIERRDP--RKADIVLITDGYEGGV-----------------SDELLREVE--L------KRSRVARFVALA 131 (152)
T ss_pred HHHHHHHHHHHhcCC--CCceEEEECCCCCCCC-----------------CHHHHHHHH--H------HHhcCcEEEEEE
Confidence 999999999875432 2356999999974421 112211111 1 134579999999
Q ss_pred ccCCCChHHHHHHHhh
Q 043643 327 FGLEHDSEAMHAIADA 342 (634)
Q Consensus 327 ~G~~~d~~~L~~iA~~ 342 (634)
+|.++++.+++-.|+.
T Consensus 132 ~g~~~~~~~~~~~~~~ 147 (152)
T cd01462 132 LGDHGNPGYDRISAED 147 (152)
T ss_pred ecCCCCchHHHHhhhh
Confidence 9999998877666653
No 37
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=99.68 E-value=1.4e-15 Score=145.20 Aligned_cols=155 Identities=30% Similarity=0.500 Sum_probs=125.6
Q ss_pred CceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcCC---CCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCCC--C
Q 043643 167 PIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLGS---ADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLSS--N 240 (634)
Q Consensus 167 p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~~---~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~~--~ 240 (634)
|+|++||||+|+||.+ +++.+|.++..++..+.. +++++|++|++....+.++. ...+...+...++.+.+ +
T Consensus 1 ~~~v~l~vD~S~SM~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~ 78 (177)
T smart00327 1 PLDVVFLLDGSGSMGPNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATVLFPLN--DSRSKDALLEALASLSYKLG 78 (177)
T ss_pred CccEEEEEeCCCccchHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceEEEccc--ccCCHHHHHHHHHhcCCCCC
Confidence 6899999999999987 999999999999999876 89999999999998888874 22567888999999884 8
Q ss_pred CCCcHHHHHHHHHHHHHhhcc---CCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCC
Q 043643 241 GGTNIVEGLKKGARVLEERRE---RSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQ 317 (634)
Q Consensus 241 GgT~i~~aL~~A~~~l~~~~~---~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~ 317 (634)
|+|++..||..+.+.+..... .+..+.||++|||.++.+. .+...+. ....
T Consensus 79 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~~------------------~~~~~~~--------~~~~ 132 (177)
T smart00327 79 GGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDGG------------------DLLKAAK--------ELKR 132 (177)
T ss_pred CCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCCc------------------cHHHHHH--------HHHH
Confidence 899999999999999863221 2225679999999988430 1222222 1224
Q ss_pred CCeeEEEEEccCCCChHHHHHHHhhcCCeEEE
Q 043643 318 PTFPVHTFGFGLEHDSEAMHAIADASGGTFSF 349 (634)
Q Consensus 318 ~~i~I~t~G~G~~~d~~~L~~iA~~tgG~~~~ 349 (634)
.++.|++||+|.+.+...|+.|+..++|.|.+
T Consensus 133 ~~i~i~~i~~~~~~~~~~l~~~~~~~~~~~~~ 164 (177)
T smart00327 133 SGVKVFVVGVGNDVDEEELKKLASAPGGVYVF 164 (177)
T ss_pred CCCEEEEEEccCccCHHHHHHHhCCCcceEEe
Confidence 56999999999877899999999999999987
No 38
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.64 E-value=5.4e-15 Score=168.76 Aligned_cols=167 Identities=22% Similarity=0.284 Sum_probs=128.2
Q ss_pred CCCCCCCceEEEEEeCCCCCCc--cHHHHHHHHHHHHH-hcCCCCeEEEEEeCC-CcEEEEcCcccCHHHHHHHHHHHhc
Q 043643 161 NDADRAPIDLVTVLDVSGSMSS--KLPLLKRAVHFIIQ-NLGSADRLSIVIFSS-VARRIFPLQRMTDSGRENAIRAINT 236 (634)
Q Consensus 161 ~~~~r~p~dlv~VlD~SgSM~g--kl~~~K~al~~li~-~L~~~drvsIV~Fs~-~a~~~~pl~~~t~~~~~~~~~~I~~ 236 (634)
....+.+..++||||.||||.+ ||..+|.++..++. .+...|+|+||+|++ .+..++|++ .++..+...|+.
T Consensus 459 ~~~~r~~~~vv~vvD~SgSM~~~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a~~~~p~t----~~~~~~~~~L~~ 534 (633)
T TIGR02442 459 IRAGRAGNLVIFVVDASGSMAARGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEAEVLLPPT----SSVELAARRLEE 534 (633)
T ss_pred HhcCCCCceEEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEcCCC----CCHHHHHHHHHh
Confidence 3456778899999999999987 99999999877764 567799999999986 588888987 456777889999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhh--ccCCCCcEEEEEeCCCCCCC-CCCCcccccccCCCCCCHHHHHhhchhhhhcccc
Q 043643 237 LSSNGGTNIVEGLKKGARVLEER--RERSPVASIILLSDGQDTHN-VLRNSYTQDEASSIPSNELAYLNLLPSSICLSKR 313 (634)
Q Consensus 237 l~~~GgT~i~~aL~~A~~~l~~~--~~~~~~~~IILlTDG~~~~g-~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~ 313 (634)
+.++|+|+++.||..|++.+... ..+.....|||||||.+|.+ .+. ....+...+..
T Consensus 535 l~~gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~------------~~~~~~~~~a~-------- 594 (633)
T TIGR02442 535 LPTGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGE------------PPTDDARTIAA-------- 594 (633)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCC------------ChHHHHHHHHH--------
Confidence 99999999999999999999742 23345567999999999874 111 01122222111
Q ss_pred ccCCCCeeEEEEEccCC-CChHHHHHHHhhcCCeEEEcC
Q 043643 314 EAGQPTFPVHTFGFGLE-HDSEAMHAIADASGGTFSFIE 351 (634)
Q Consensus 314 ~~~~~~i~I~t~G~G~~-~d~~~L~~iA~~tgG~~~~i~ 351 (634)
.....+|.+++|+.+.. .....++.||+.+||.||+++
T Consensus 595 ~l~~~~i~~~vIdt~~~~~~~~~~~~lA~~~gg~y~~l~ 633 (633)
T TIGR02442 595 KLAARGILFVVIDTESGFVRLGLAEDLARALGGEYVRLD 633 (633)
T ss_pred HHHhcCCeEEEEeCCCCCcchhHHHHHHHhhCCeEEecC
Confidence 12346888888888654 456799999999999999874
No 39
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.63 E-value=6.7e-15 Score=139.98 Aligned_cols=152 Identities=20% Similarity=0.261 Sum_probs=117.5
Q ss_pred eEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCCCCC--C
Q 043643 169 DLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLG---SADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLSSNG--G 242 (634)
Q Consensus 169 dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~---~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~~~G--g 242 (634)
||+||||.|+||.. .++.+|+.+..+++.+. ...||+||+|++.++..++|... .++..+++.|+++...| +
T Consensus 2 DivfllD~S~Si~~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~~~~~l~~~--~~~~~l~~~i~~i~~~~g~~ 79 (165)
T cd01481 2 DIVFLIDGSDNVGSGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPRPEFYLNTH--STKADVLGAVRRLRLRGGSQ 79 (165)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCeeEEEecccc--CCHHHHHHHHHhcccCCCCc
Confidence 89999999999987 99999999999999886 46799999999999999999844 45788999999987654 5
Q ss_pred CcHHHHHHHHHHHHHhhc-----cCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCC
Q 043643 243 TNIVEGLKKGARVLEERR-----ERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQ 317 (634)
Q Consensus 243 T~i~~aL~~A~~~l~~~~-----~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~ 317 (634)
|+++.||..+.+.+-... .++..+.+||+|||..+.. +..... .++.
T Consensus 80 t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d~--------------------~~~~a~--------~lr~ 131 (165)
T cd01481 80 LNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQDD--------------------VERPAV--------ALKR 131 (165)
T ss_pred ccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcch--------------------HHHHHH--------HHHH
Confidence 899999999987663321 1244577999999987621 111111 1235
Q ss_pred CCeeEEEEEccCCCChHHHHHHHhhcCCeEEEcCC
Q 043643 318 PTFPVHTFGFGLEHDSEAMHAIADASGGTFSFIET 352 (634)
Q Consensus 318 ~~i~I~t~G~G~~~d~~~L~~iA~~tgG~~~~i~~ 352 (634)
.||.|+++|+| ..|...|+.||.... ..|.++|
T Consensus 132 ~gv~i~~vG~~-~~~~~eL~~ias~p~-~vf~v~~ 164 (165)
T cd01481 132 AGIVPFAIGAR-NADLAELQQIAFDPS-FVFQVSD 164 (165)
T ss_pred CCcEEEEEeCC-cCCHHHHHHHhCCCc-cEEEecC
Confidence 78999999998 478999999998663 4444443
No 40
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=99.59 E-value=3.9e-14 Score=131.98 Aligned_cols=153 Identities=32% Similarity=0.499 Sum_probs=121.3
Q ss_pred ceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcCC---CCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCC--CCC
Q 043643 168 IDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLGS---ADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLS--SNG 241 (634)
Q Consensus 168 ~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~~---~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~--~~G 241 (634)
.+++||||.|+||.. +++.+|.++..++..+.. .++++|+.|++....+.++... .+.+.+.+.++.+. .+|
T Consensus 1 ~~v~~viD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 78 (161)
T cd00198 1 ADIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTD--TDKADLLEAIDALKKGLGG 78 (161)
T ss_pred CcEEEEEeCCCCcCcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccceeeccccc--CCHHHHHHHHHhcccCCCC
Confidence 479999999999955 999999999999999986 8999999999999888888732 24677778888876 678
Q ss_pred CCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCCee
Q 043643 242 GTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPTFP 321 (634)
Q Consensus 242 gT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i~ 321 (634)
+|++..||..+.+.+.........+.||++|||.++.+.. .....+. ..+..++.
T Consensus 79 ~t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~~~-----------------~~~~~~~--------~~~~~~v~ 133 (161)
T cd00198 79 GTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGPE-----------------LLAEAAR--------ELRKLGIT 133 (161)
T ss_pred CccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCCcc-----------------hhHHHHH--------HHHHcCCE
Confidence 9999999999999997654345667899999998875321 1222221 12346899
Q ss_pred EEEEEccCCCChHHHHHHHhhc-CCeE
Q 043643 322 VHTFGFGLEHDSEAMHAIADAS-GGTF 347 (634)
Q Consensus 322 I~t~G~G~~~d~~~L~~iA~~t-gG~~ 347 (634)
|+.||+|.+.+...|+.|+..+ +|.|
T Consensus 134 v~~v~~g~~~~~~~l~~l~~~~~~~~~ 160 (161)
T cd00198 134 VYTIGIGDDANEDELKEIADKTTGGAV 160 (161)
T ss_pred EEEEEcCCCCCHHHHHHHhcccccccc
Confidence 9999999878889999999887 4443
No 41
>PLN00162 transport protein sec23; Provisional
Probab=99.57 E-value=6.4e-12 Score=145.62 Aligned_cols=293 Identities=15% Similarity=0.131 Sum_probs=193.4
Q ss_pred CCCCCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEEcCc--------------ccC----
Q 043643 163 ADRAPIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFPLQ--------------RMT---- 223 (634)
Q Consensus 163 ~~r~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~pl~--------------~~t---- 223 (634)
....|.-++||||+| +.. .++.+|.++...++.|+++.+||||+|++.+...- |. ..+
T Consensus 120 ~~~~pp~fvFvID~s--~~~~~l~~lk~sl~~~L~~LP~~a~VGlITF~s~V~~~~-L~~~~~~~~~Vf~g~k~~t~~~l 196 (761)
T PLN00162 120 GAPSPPVFVFVVDTC--MIEEELGALKSALLQAIALLPENALVGLITFGTHVHVHE-LGFSECSKSYVFRGNKEVSKDQI 196 (761)
T ss_pred CCCCCcEEEEEEecc--hhHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEE-cCCCCCcceEEecCCccCCHHHH
Confidence 344677899999988 455 89999999999999999999999999998764321 10 000
Q ss_pred -------------------------------------HHHHHHHHHHHhcCCCC---------CCCcHHHHHHHHHHHHH
Q 043643 224 -------------------------------------DSGRENAIRAINTLSSN---------GGTNIVEGLKKGARVLE 257 (634)
Q Consensus 224 -------------------------------------~~~~~~~~~~I~~l~~~---------GgT~i~~aL~~A~~~l~ 257 (634)
.+.+..+...|+.|... ....++.||..|..+|+
T Consensus 197 ~~~l~l~~~~~~~~~~~~~~~~~~~~~p~~~~fLvpl~e~~~~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL~vA~~lL~ 276 (761)
T PLN00162 197 LEQLGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPASECEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLG 276 (761)
T ss_pred HHHhccccccccccccccccccccccCCCccceeEEHHHHHHHHHHHHHhhhccccccCCCCCCCccHHHHHHHHHHHHh
Confidence 11234455555555422 25679999999999997
Q ss_pred hhccCCCCcEEEEEeCCCCCCCCCCCcccccc---cCCCC--CCHHHHHhhchhhhhccccccCCCCeeEEEEEccCC-C
Q 043643 258 ERRERSPVASIILLSDGQDTHNVLRNSYTQDE---ASSIP--SNELAYLNLLPSSICLSKREAGQPTFPVHTFGFGLE-H 331 (634)
Q Consensus 258 ~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~---~~~~~--~~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~-~ 331 (634)
... ++....|++++-|.++.|.+....+... +.... .....+..-..+.++..+.++...++.|..|.++.+ .
T Consensus 277 ~~~-~~~gGrI~~F~sgppT~GpG~v~~r~~~~~~rsh~di~k~~~~~~~~a~~fY~~la~~~~~~gisvDlF~~s~dqv 355 (761)
T PLN00162 277 ACV-PGTGARIMAFVGGPCTEGPGAIVSKDLSEPIRSHKDLDKDAAPYYKKAVKFYEGLAKQLVAQGHVLDVFACSLDQV 355 (761)
T ss_pred hcc-CCCceEEEEEeCCCCCCCCceeecccccccccCccccccchhhhcchHHHHHHHHHHHHHHcCceEEEEEcccccc
Confidence 542 3445679999999999987654221110 01000 001111111111222233345568899999988765 5
Q ss_pred ChHHHHHHHhhcCCeEEEcCChhhHHHHHHHHhhccccc-------eeeeeEEEEEecCCCeEEEEecCCCCCc-c----
Q 043643 332 DSEAMHAIADASGGTFSFIETLSILQDAFARCIGGLLSV-------VSQDVKLTIRSKSAGVRIGSIPSGRYNS-E---- 399 (634)
Q Consensus 332 d~~~L~~iA~~tgG~~~~i~~~~~l~~~f~~~l~~l~s~-------va~~~~l~v~~~~~~v~i~~v~~~~~~~-~---- 399 (634)
+-..|+.+++.|||..++.++.+. ..|.+.+..+++. .+.+..++|++ ++|++|..+. |.+.+ .
T Consensus 356 glaem~~l~~~TGG~v~~~~sF~~--~~f~~~l~r~~~r~~~~~~~~gf~a~~~Vrt-S~glkv~g~~-G~~~s~~~~~~ 431 (761)
T PLN00162 356 GVAEMKVAVERTGGLVVLAESFGH--SVFKDSLRRVFERDGEGSLGLSFNGTFEVNC-SKDVKVQGAI-GPCASLEKKGP 431 (761)
T ss_pred CHHHHhhhHhhcCcEEEEeCCcCh--HHHHHHHHHHhcccccccccccceeEEEEEe-cCCeEEeeeE-cCcccccccCC
Confidence 888999999999999999988865 3455555555542 68889999997 7999999886 43321 1
Q ss_pred -----cccCCceeEEEcCCccCCcEEEEEEEEEcCCCCCCCCCCCCccceEEEEEEEecCCCCceeeeecc
Q 043643 400 -----VLDEGQQAVIDIGNLYADEEKEFMVYLSIPVSSAEGEQRPECTALLDVFCTHKDSASMEIHQVEGE 465 (634)
Q Consensus 400 -----~~~~~~~~~i~lg~l~~~e~r~~lv~l~~p~~~~~~~~~~~~~~l~~v~~~Y~~~~~~~~~~~~~~ 465 (634)
..+.+....+.++.+..+....|.+++.-....... .......+|+.+.|+++.+.+.++|.+-
T Consensus 432 ~vsd~~iG~g~T~~w~l~~l~~~~t~av~f~~~~~~~~~~~--~~~~~~~iQ~a~lYt~~~G~rRiRV~T~ 500 (761)
T PLN00162 432 SVSDTEIGEGGTTAWKLCGLDKKTSLAVFFEVANSGQSNPQ--PPGQQFFLQFLTRYQHSNGQTRLRVTTV 500 (761)
T ss_pred ccccccccCCCCceeeecCcCcCCEEEEEEEEccccccCCC--CCCceEEEEEEEEEEcCCCCEEEEEEcc
Confidence 012244567899999998888888887633310000 0012567999999999988888888653
No 42
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=99.54 E-value=1.1e-13 Score=128.27 Aligned_cols=143 Identities=24% Similarity=0.388 Sum_probs=105.3
Q ss_pred ceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcCC------CCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCCCC
Q 043643 168 IDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLGS------ADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLSSN 240 (634)
Q Consensus 168 ~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~~------~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~~~ 240 (634)
+-+++|||+||||.| +|+.++..+..+++.|.. ...++||+|++.++...||+.+.. -....|.+.
T Consensus 4 lP~~lllDtSgSM~Ge~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~~~~n-------F~~p~L~a~ 76 (207)
T COG4245 4 LPCYLLLDTSGSMIGEPIEALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPFTDAAN-------FNPPILTAQ 76 (207)
T ss_pred CCEEEEEecCcccccccHHHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEechhhHhh-------cCCCceecC
Confidence 348999999999999 999999999999999863 357999999999999999982111 112347789
Q ss_pred CCCcHHHHHHHHHHHHHhhcc-------CCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhcccc
Q 043643 241 GGTNIVEGLKKGARVLEERRE-------RSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKR 313 (634)
Q Consensus 241 GgT~i~~aL~~A~~~l~~~~~-------~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~ 313 (634)
|||.+++||..+.+.++.+.. ......|+|+|||.|+.. +..-.....
T Consensus 77 GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD~--------------------w~~~~~~~~----- 131 (207)
T COG4245 77 GGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTDD--------------------WQAGAALVF----- 131 (207)
T ss_pred CCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcchH--------------------HHhHHHHhh-----
Confidence 999999999999999987632 123456999999999742 111100000
Q ss_pred ccCCCCeeEEEEEccCC-CChHHHHHHHhh
Q 043643 314 EAGQPTFPVHTFGFGLE-HDSEAMHAIADA 342 (634)
Q Consensus 314 ~~~~~~i~I~t~G~G~~-~d~~~L~~iA~~ 342 (634)
........|-.|++|.+ .|...|++|++.
T Consensus 132 ~~~~~~k~v~a~~~G~~~ad~~~L~qit~~ 161 (207)
T COG4245 132 QGERRAKSVAAFSVGVQGADNKTLNQITEK 161 (207)
T ss_pred hcccccceEEEEEecccccccHHHHHHHHh
Confidence 11234456778888876 777888888864
No 43
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=99.53 E-value=3.1e-13 Score=129.79 Aligned_cols=154 Identities=14% Similarity=0.272 Sum_probs=116.4
Q ss_pred EEEEEeCCCCCCc------cHHHHHHHHHHHHH---hcCCCCeEEEEEeCC-CcEEEEcCcccCHHHHHHHHHHHhcCCC
Q 043643 170 LVTVLDVSGSMSS------KLPLLKRAVHFIIQ---NLGSADRLSIVIFSS-VARRIFPLQRMTDSGRENAIRAINTLSS 239 (634)
Q Consensus 170 lv~VlD~SgSM~g------kl~~~K~al~~li~---~L~~~drvsIV~Fs~-~a~~~~pl~~~t~~~~~~~~~~I~~l~~ 239 (634)
++++||+|.||.. ||+.+|+++..++. ...|.+|+|||+|.+ .+.++.|+| .+...++..++.+.+
T Consensus 6 ~vi~lD~S~sM~a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v~~plT----~D~~~~~~~L~~i~~ 81 (187)
T cd01452 6 TMICIDNSEYMRNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEVLVTLT----NDQGKILSKLHDVQP 81 (187)
T ss_pred EEEEEECCHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEEEECCC----CCHHHHHHHHHhCCC
Confidence 6899999999985 99999999988762 235789999999999 999999999 668899999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhhccCCCC-cEEEEEeCC-CCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCC
Q 043643 240 NGGTNIVEGLKKGARVLEERRERSPV-ASIILLSDG-QDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQ 317 (634)
Q Consensus 240 ~GgT~i~~aL~~A~~~l~~~~~~~~~-~~IILlTDG-~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~ 317 (634)
+|+|++..||..|...|+.+..++.. +.||+++++ .++. .++.+.+. ..++
T Consensus 82 ~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d~-------------------~~i~~~~~--------~lkk 134 (187)
T cd01452 82 KGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEEDE-------------------KDLVKLAK--------RLKK 134 (187)
T ss_pred CCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCCH-------------------HHHHHHHH--------HHHH
Confidence 99999999999999999876654443 446666655 4431 23333322 2346
Q ss_pred CCeeEEEEEccCC-CChHHHHHHHhhcC----CeEEEcCChh
Q 043643 318 PTFPVHTFGFGLE-HDSEAMHAIADASG----GTFSFIETLS 354 (634)
Q Consensus 318 ~~i~I~t~G~G~~-~d~~~L~~iA~~tg----G~~~~i~~~~ 354 (634)
.+|.|++||||.. .+...|+.+.+.-+ -+|..++...
T Consensus 135 ~~I~v~vI~~G~~~~~~~~l~~~~~~~~~~~~s~~~~~~~~~ 176 (187)
T cd01452 135 NNVSVDIINFGEIDDNTEKLTAFIDAVNGKDGSHLVSVPPGE 176 (187)
T ss_pred cCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCCceEEEeCCCC
Confidence 7999999999965 45667777766542 3455555433
No 44
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=2.7e-12 Score=141.61 Aligned_cols=297 Identities=18% Similarity=0.180 Sum_probs=204.5
Q ss_pred EEEEEEeCCCCCCCCCCCCceEEEEEeCCCCCCc--cHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCcEEEE-------
Q 043643 149 AVLLRVCAPSLPNDADRAPIDLVTVLDVSGSMSS--KLPLLKRAVHFIIQNLG--SADRLSIVIFSSVARRIF------- 217 (634)
Q Consensus 149 ~v~v~~~ap~~~~~~~r~p~dlv~VlD~SgSM~g--kl~~~K~al~~li~~L~--~~drvsIV~Fs~~a~~~~------- 217 (634)
.-.|++.||......+..|.-+|||||+|-|-.. -++.+++++..-++.|. +..|+++|+|++...-.-
T Consensus 276 ~s~vE~iAP~eYmlR~P~Pavy~FliDVS~~a~ksG~L~~~~~slL~~LD~lpgd~Rt~igfi~fDs~ihfy~~~~~~~q 355 (887)
T KOG1985|consen 276 SSVVEFIAPSEYMLRPPQPAVYVFLIDVSISAIKSGYLETVARSLLENLDALPGDPRTRIGFITFDSTIHFYSVQGDLNQ 355 (887)
T ss_pred ceeEEEecCcccccCCCCCceEEEEEEeehHhhhhhHHHHHHHHHHHhhhcCCCCCcceEEEEEeeceeeEEecCCCcCC
Confidence 4568999999888888899999999999976554 89999999999999998 678999999998653210
Q ss_pred -----------cCcccCH-------HHHHHHHHHHhcC---C---CCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeC
Q 043643 218 -----------PLQRMTD-------SGRENAIRAINTL---S---SNGGTNIVEGLKKGARVLEERRERSPVASIILLSD 273 (634)
Q Consensus 218 -----------pl~~~t~-------~~~~~~~~~I~~l---~---~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTD 273 (634)
++-+|-+ +-|+.+...|+.| - -.-+.+++.||+.|.+++....+ .|+++.-
T Consensus 356 p~mm~vsdl~d~flp~pd~lLv~L~~ck~~i~~lL~~lp~~F~~~~~t~~alGpALkaaf~li~~~GG-----ri~vf~s 430 (887)
T KOG1985|consen 356 PQMMIVSDLDDPFLPMPDSLLVPLKECKDLIETLLKTLPEMFQDTRSTGSALGPALKAAFNLIGSTGG-----RISVFQS 430 (887)
T ss_pred CceeeeccccccccCCchhheeeHHHHHHHHHHHHHHHHHHHhhccCcccccCHHHHHHHHHHhhcCC-----eEEEEec
Confidence 0111110 2244444444443 2 23477899999999999976653 4899999
Q ss_pred CCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCCeeEEEEEccCCC-ChHHHHHHHhhcCCeEEEcCC
Q 043643 274 GQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPTFPVHTFGFGLEH-DSEAMHAIADASGGTFSFIET 352 (634)
Q Consensus 274 G~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~~-d~~~L~~iA~~tgG~~~~i~~ 352 (634)
+.||.|.+...-+++...........+..--...++..+.++.+.+|.|.-|-|...+ |-+.|..|+..+||..||..+
T Consensus 431 ~lPnlG~G~L~~rEdp~~~~s~~~~qlL~~~t~FYK~~a~~cs~~qI~VDlFl~s~qY~DlAsLs~LskySgG~~y~YP~ 510 (887)
T KOG1985|consen 431 TLPNLGAGKLKPREDPNVRSSDEDSQLLSPATDFYKDLALECSKSQICVDLFLFSEQYTDLASLSCLSKYSGGQVYYYPS 510 (887)
T ss_pred cCCCCCccccccccccccccchhhhhccCCCchHHHHHHHHhccCceEEEEEeecccccchhhhhccccccCceeEEccC
Confidence 9999998765444222222211111011001111222223567899999999997665 778999999999999888776
Q ss_pred hhhH----HHHHHHHhhcccc-ceeeeeEEEEEecCCCeEEEEecCCCCCcccccCCceeEEEcCCccCCcEEEEEEEEE
Q 043643 353 LSIL----QDAFARCIGGLLS-VVSQDVKLTIRSKSAGVRIGSIPSGRYNSEVLDEGQQAVIDIGNLYADEEKEFMVYLS 427 (634)
Q Consensus 353 ~~~l----~~~f~~~l~~l~s-~va~~~~l~v~~~~~~v~i~~v~~~~~~~~~~~~~~~~~i~lg~l~~~e~r~~lv~l~ 427 (634)
++.= ...|.+.+...++ .++-+..++|+| +.|+.+..++ |++..+ .+....+..+..+..-.|-+.++
T Consensus 511 f~~s~p~~~~Kf~~el~r~Ltr~~~feaVmRiR~-S~gl~~~~f~-GnFF~R-----StDLla~~~v~~D~sy~~qisiE 583 (887)
T KOG1985|consen 511 FDGSNPHDVLKFARELARYLTRKIGFEAVMRIRC-STGLRMSSFF-GNFFVR-----STDLLALPNVNPDQSYAFQISIE 583 (887)
T ss_pred CCCCCHHHHHHHHHHHHHHhhhhhhhheeEEeec-ccccccccee-cccccC-----cHHHhcccCCCCCccceEEEEee
Confidence 5432 4567777776665 599999999998 7899998874 555443 34566777888877766666665
Q ss_pred cCCCCCCCCCCCCccceEEEEEEEecCCCCceeeeecc
Q 043643 428 IPVSSAEGEQRPECTALLDVFCTHKDSASMEIHQVEGE 465 (634)
Q Consensus 428 ~p~~~~~~~~~~~~~~l~~v~~~Y~~~~~~~~~~~~~~ 465 (634)
..... ..-.+|+.+.|+...+.+.++|.+-
T Consensus 584 --esl~~------~~~~fQvAlLyT~~~GERRIRV~T~ 613 (887)
T KOG1985|consen 584 --ESLTT------GFCVFQVALLYTLSKGERRIRVHTL 613 (887)
T ss_pred --hhcCC------ceeEEEeeeeecccCCceeEEEEEe
Confidence 22221 1345899999999999999988643
No 45
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.51 E-value=2.8e-13 Score=132.98 Aligned_cols=149 Identities=17% Similarity=0.249 Sum_probs=109.5
Q ss_pred CceEEEEEeCCCCCCc--------cHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhc
Q 043643 167 PIDLVTVLDVSGSMSS--------KLPLLKRAVHFIIQNLG--SADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINT 236 (634)
Q Consensus 167 p~dlv~VlD~SgSM~g--------kl~~~K~al~~li~~L~--~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~ 236 (634)
+.|++|+||.||||.. |++.+|+++..++..+. +.|+++++.|++......|++ +..+.+.+.+
T Consensus 2 ~~dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~~~~~~------~~~v~~~~~~ 75 (199)
T cd01457 2 NRDYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCEEYDSDGITVYLFSGDFRRYDNVN------SSKVDQLFAE 75 (199)
T ss_pred CcCEEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCccccCCcC------HHHHHHHHhc
Confidence 5699999999999973 79999999999888764 478899999999887666654 6677778888
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhccC---C-CCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccc
Q 043643 237 LSSNGGTNIVEGLKKGARVLEERRER---S-PVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSK 312 (634)
Q Consensus 237 l~~~GgT~i~~aL~~A~~~l~~~~~~---~-~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~ 312 (634)
+.+.|+|+++.+|..+++.+..+... . ....||++|||.++.. ....+++.+....
T Consensus 76 ~~p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~------------------~~~~~~i~~a~~~-- 135 (199)
T cd01457 76 NSPDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDK------------------DAVERVIIKASDE-- 135 (199)
T ss_pred CCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcH------------------HHHHHHHHHHHHh--
Confidence 98999999999999998655433211 1 1477999999998731 2223322211111
Q ss_pred cccCCCCeeEEEEEccCCC-ChHHHHHHHhh
Q 043643 313 REAGQPTFPVHTFGFGLEH-DSEAMHAIADA 342 (634)
Q Consensus 313 ~~~~~~~i~I~t~G~G~~~-d~~~L~~iA~~ 342 (634)
.....++.|+++++|.+. +...|+.|++.
T Consensus 136 -l~~~~~i~i~~v~vG~~~~~~~~L~~ld~~ 165 (199)
T cd01457 136 -LDADNELAISFLQIGRDPAATAFLKALDDQ 165 (199)
T ss_pred -hccccCceEEEEEeCCcHHHHHHHHHHhHH
Confidence 112257999999999874 56678888864
No 46
>PTZ00395 Sec24-related protein; Provisional
Probab=99.50 E-value=9.2e-12 Score=143.79 Aligned_cols=287 Identities=15% Similarity=0.180 Sum_probs=190.9
Q ss_pred CCCCCCceEEEEEeCCCCCCc--cHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCcEE-----------------------
Q 043643 162 DADRAPIDLVTVLDVSGSMSS--KLPLLKRAVHFIIQNLG-SADRLSIVIFSSVARR----------------------- 215 (634)
Q Consensus 162 ~~~r~p~dlv~VlD~SgSM~g--kl~~~K~al~~li~~L~-~~drvsIV~Fs~~a~~----------------------- 215 (634)
.....|.-++||||+|-.--. -+..+-++++..|+.|. +..||+||+|++...-
T Consensus 947 ~~~p~PP~YvFLIDVS~~AVkSGLl~tacesIK~sLDsL~dpRTRVGIITFDSsLHFYNLks~l~~~~~~~~~~~~l~qP 1026 (1560)
T PTZ00395 947 VKNMLPPYFVFVVECSYNAIYNNITYTILEGIRYAVQNVKCPQTKIAIITFNSSIYFYHCKGGKGVSGEEGDGGGGSGNH 1026 (1560)
T ss_pred ccCCCCCEEEEEEECCHHHHhhChHHHHHHHHHHHHhcCCCCCcEEEEEEecCcEEEEecCcccccccccccccccCCCc
Confidence 345677899999999965432 67778888888888875 5689999999986410
Q ss_pred ---EE-----cCcccC--------HHHHHHHHHHHhcCC------CCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeC
Q 043643 216 ---IF-----PLQRMT--------DSGRENAIRAINTLS------SNGGTNIVEGLKKGARVLEERRERSPVASIILLSD 273 (634)
Q Consensus 216 ---~~-----pl~~~t--------~~~~~~~~~~I~~l~------~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTD 273 (634)
++ |+.++. .+.++.+...|+.|. ...+..++.||+.|.++|+.... ...|+++.-
T Consensus 1027 QMLVVSDLDDPFLPlP~ddLLVnL~ESRevIe~LLDkLPemFt~t~~~esCLGSALqAA~~aLk~~GG---GGKIiVF~S 1103 (1560)
T PTZ00395 1027 QVIVMSDVDDPFLPLPLEDLFFGCVEEIDKINTLIDTIKSVSTTMQSYGSCGNSALKIAMDMLKERNG---LGSICMFYT 1103 (1560)
T ss_pred eEEeecCCccCcCCCCccCeeechHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHhcCC---CceEEEEEc
Confidence 10 111211 134555666666552 23578899999999999986542 234777777
Q ss_pred CCCCCCCCCCccc---ccccCCCCCCHHHHHhhchhhhhccccccCCCCeeEEEEEccCCC---ChHHHHHHHhhcCCeE
Q 043643 274 GQDTHNVLRNSYT---QDEASSIPSNELAYLNLLPSSICLSKREAGQPTFPVHTFGFGLEH---DSEAMHAIADASGGTF 347 (634)
Q Consensus 274 G~~~~g~~~~~~~---~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~~---d~~~L~~iA~~tgG~~ 347 (634)
..|+.|.+....+ ..+.........-|+.+ +.++.+.+|.|..|-|+..+ +-..|..|+..|||..
T Consensus 1104 SLPniGpGaLK~Re~~~KEk~Ll~pqd~FYK~L--------A~ECsk~qISVDLFLfSsqYvDVDVATLg~Lsr~TGGql 1175 (1560)
T PTZ00395 1104 TTPNCGIGAIKELKKDLQENFLEVKQKIFYDSL--------LLDLYAFNISVDIFIISSNNVRVCVPSLQYVAQNTGGKI 1175 (1560)
T ss_pred CCCCCCCCcccccccccccccccccchHHHHHH--------HHHHHhcCCceEEEEccCcccccccccccchhcccceeE
Confidence 9999987654211 11111111112223332 22455688999999887543 3478999999999998
Q ss_pred EEcCChhhH---HHHHHHHhhcccc-ceeeeeEEEEEecCCCeEEEEecC-CCCCcccccCCceeEEEcCCccCCcEEEE
Q 043643 348 SFIETLSIL---QDAFARCIGGLLS-VVSQDVKLTIRSKSAGVRIGSIPS-GRYNSEVLDEGQQAVIDIGNLYADEEKEF 422 (634)
Q Consensus 348 ~~i~~~~~l---~~~f~~~l~~l~s-~va~~~~l~v~~~~~~v~i~~v~~-~~~~~~~~~~~~~~~i~lg~l~~~e~r~~ 422 (634)
+|.+++... .+.+.++...+.. .++.+..++|+| +.|++|..++. |+....+. ....+.|+.+..++...|
T Consensus 1176 yyYPnFna~rD~~KL~~DL~r~LTre~iGyEAVMRVRC-S~GLrVs~fyG~GnnF~s~r---StDLLaLP~Id~DqSfaV 1251 (1560)
T PTZ00395 1176 LFVENFLWQKDYKEIYMNIMDTLTSEDIAYCCELKLRY-SHHMSVKKLFCCNNNFNSII---SVDTIKIPKIRHDQTFAF 1251 (1560)
T ss_pred EEeCCCcccccHHHHHHHHHHHhhccceeeEEEEEEEC-CCCeEEEEEeccCCcccccc---ccccccccccCCCceEEE
Confidence 888765322 2333444444444 589999999998 79999999872 12221110 124578999999999998
Q ss_pred EEEEEcCCCCCCCCCCCCccceEEEEEEEecCCCCceeeeecceeEEe
Q 043643 423 MVYLSIPVSSAEGEQRPECTALLDVFCTHKDSASMEIHQVEGEKVEIR 470 (634)
Q Consensus 423 lv~l~~p~~~~~~~~~~~~~~l~~v~~~Y~~~~~~~~~~~~~~~~~v~ 470 (634)
+++++-...... ...+|+.|.|++..+.+.|+|.+..+.|.
T Consensus 1252 eLk~DEkL~~~~-------~AYFQaALLYTSssGERRIRVHTLALPVT 1292 (1560)
T PTZ00395 1252 LLNYSDISESKK-------QIYFQCACIYTNLWGDRFVRLHTTHMNLT 1292 (1560)
T ss_pred EEEeccccCCCC-------cEEEEEEEeeccCCCcEEEEEEeeeeccc
Confidence 888863322222 57899999999999999999987666554
No 47
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.42 E-value=2.5e-12 Score=150.32 Aligned_cols=175 Identities=27% Similarity=0.376 Sum_probs=142.7
Q ss_pred CCCCCCCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEEc-----CcccCHHHHHHHHHHH
Q 043643 161 NDADRAPIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFP-----LQRMTDSGRENAIRAI 234 (634)
Q Consensus 161 ~~~~r~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~p-----l~~~t~~~~~~~~~~I 234 (634)
......|.|+++++|+||||.| +++++|..+..+++.|.++|.|.|++|++.+..+.| +.+.|-.+++.+++.|
T Consensus 219 i~aAt~pKdiviLlD~SgSm~g~~~~lak~tv~~iLdtLs~~Dfvni~tf~~~~~~v~pc~~~~lvqAt~~nk~~~~~~i 298 (1104)
T KOG2353|consen 219 IQAATSPKDIVILLDVSGSMSGLRLDLAKQTVNEILDTLSDNDFVNILTFNSEVNPVSPCFNGTLVQATMRNKKVFKEAI 298 (1104)
T ss_pred ccccCCccceEEEEeccccccchhhHHHHHHHHHHHHhcccCCeEEEEeeccccCcccccccCceeecchHHHHHHHHHH
Confidence 3456789999999999999999 999999999999999999999999999999987764 6677889999999999
Q ss_pred hcCCCCCCCcHHHHHHHHHHHHHhhccCCC-------CcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhh
Q 043643 235 NTLSSNGGTNIVEGLKKGARVLEERRERSP-------VASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSS 307 (634)
Q Consensus 235 ~~l~~~GgT~i~~aL~~A~~~l~~~~~~~~-------~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~ 307 (634)
+.+.+.|.+++..|+..|+++|........ ...|+|+|||.++. ..+.+..
T Consensus 299 ~~l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG~~~~---------------------~~~If~~- 356 (1104)
T KOG2353|consen 299 ETLDAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDGVDEN---------------------AKEIFEK- 356 (1104)
T ss_pred hhhccccccchhhhHHHHHHHHHHhccccccccccccceeeEEeecCCccc---------------------HHHHHHh-
Confidence 999999999999999999999975432211 24699999998763 2222221
Q ss_pred hhccccccCCCCeeEEEEEccCC-CChHHHHHHHhhcCCeEEEcCChhhHHHHHHH
Q 043643 308 ICLSKREAGQPTFPVHTFGFGLE-HDSEAMHAIADASGGTFSFIETLSILQDAFAR 362 (634)
Q Consensus 308 i~~~~~~~~~~~i~I~t~G~G~~-~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f~~ 362 (634)
.+ .....|.|+||-+|.. .+...++.+|....|.|++|.+.+++...-..
T Consensus 357 yn-----~~~~~Vrvftflig~~~~~~~~~~wmac~n~gyy~~I~~~~~v~~~~~~ 407 (1104)
T KOG2353|consen 357 YN-----WPDKKVRVFTFLIGDEVYDLDEIQWMACANKGYYVHIISIADVRENVLE 407 (1104)
T ss_pred hc-----cCCCceEEEEEEecccccccccchhhhhhCCCceEeccchhhcChHhhh
Confidence 11 1267899999999965 35556999999999999999998877554433
No 48
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=1e-10 Score=129.64 Aligned_cols=286 Identities=13% Similarity=0.119 Sum_probs=188.1
Q ss_pred CCCCCceEEEEEeCCCC--CCccHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCcEE---------------------E
Q 043643 163 ADRAPIDLVTVLDVSGS--MSSKLPLLKRAVHFIIQNLG---SADRLSIVIFSSVARR---------------------I 216 (634)
Q Consensus 163 ~~r~p~dlv~VlD~SgS--M~gkl~~~K~al~~li~~L~---~~drvsIV~Fs~~a~~---------------------~ 216 (634)
....|..+||+||+|-. |.|-...+-++++.++..|. ++.||+||+|++..+- .
T Consensus 413 k~p~ppafvFmIDVSy~Ai~~G~~~a~ce~ik~~l~~lp~~~p~~~Vgivtfd~tvhFfnl~s~L~qp~mliVsdv~dvf 492 (1007)
T KOG1984|consen 413 KPPKPPAFVFMIDVSYNAISNGAVKAACEAIKSVLEDLPREEPNIRVGIVTFDKTVHFFNLSSNLAQPQMLIVSDVDDVF 492 (1007)
T ss_pred CCCCCceEEEEEEeehhhhhcchHHHHHHHHHHHHhhcCccCCceEEEEEEecceeEeeccCccccCceEEEeecccccc
Confidence 35678899999999843 44566677778888887765 6789999999987531 1
Q ss_pred EcCc----ccCHHHHHHHHHHHhcC---CCC---CCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCC-cc
Q 043643 217 FPLQ----RMTDSGRENAIRAINTL---SSN---GGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRN-SY 285 (634)
Q Consensus 217 ~pl~----~~t~~~~~~~~~~I~~l---~~~---GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~-~~ 285 (634)
+||. -+..+.+.-+...++.+ -.+ --|-++.+|+.|...|+... ...+++++.-.++.+.+.. ..
T Consensus 493 vPf~~g~~V~~~es~~~i~~lLd~Ip~mf~~sk~pes~~g~alqaa~lalk~~~----gGKl~vF~s~Lpt~g~g~kl~~ 568 (1007)
T KOG1984|consen 493 VPFLDGLFVNPNESRKVIELLLDSIPTMFQDSKIPESVFGSALQAAKLALKAAD----GGKLFVFHSVLPTAGAGGKLSN 568 (1007)
T ss_pred cccccCeeccchHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHhccC----CceEEEEecccccccCcccccc
Confidence 2221 11123455555555554 222 25678999999999997653 2337888888888876632 12
Q ss_pred cccccCCCCCCHHHHHhhchhhhhccccccCCCCeeEEEEEccCC-CChHHHHHHHhhcCCeEEEcCChhhHH---HHHH
Q 043643 286 TQDEASSIPSNELAYLNLLPSSICLSKREAGQPTFPVHTFGFGLE-HDSEAMHAIADASGGTFSFIETLSILQ---DAFA 361 (634)
Q Consensus 286 ~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~-~d~~~L~~iA~~tgG~~~~i~~~~~l~---~~f~ 361 (634)
+.+.+..+...+..+-.-..++++..+.+..+.++.|..|-+-.. .|.+.+..++..|||..|....+..+. ..+.
T Consensus 569 r~D~~l~~t~kek~l~~pq~~~y~~LA~e~v~~g~svDlF~t~~ayvDvAtlg~v~~~TgG~vy~Y~~F~a~~D~~rl~n 648 (1007)
T KOG1984|consen 569 RDDRRLIGTDKEKNLLQPQDKTYTTLAKEFVESGCSVDLFLTPNAYVDVATLGVVPALTGGQVYKYYPFQALTDGPRLLN 648 (1007)
T ss_pred cchhhhhcccchhhccCcchhHHHHHHHHHHHhCceEEEEEcccceeeeeeecccccccCceeEEecchhhcccHHHHHH
Confidence 222222222111111110111122222234457888888877443 577888899999999988777766554 5556
Q ss_pred HHhhccccceeeeeEEEEEecCCCeEEEEecCCCCCcccccCCceeEEEcCCccCCcEEEEEEEEEcCCCCCCCCCCCCc
Q 043643 362 RCIGGLLSVVSQDVKLTIRSKSAGVRIGSIPSGRYNSEVLDEGQQAVIDIGNLYADEEKEFMVYLSIPVSSAEGEQRPEC 441 (634)
Q Consensus 362 ~~l~~l~s~va~~~~l~v~~~~~~v~i~~v~~~~~~~~~~~~~~~~~i~lg~l~~~e~r~~lv~l~~p~~~~~~~~~~~~ 441 (634)
++...+...+.-++.++++| +.|+++..++ |++-- .+...+.|+.|..+...+++|..+-+...+.
T Consensus 649 DL~~~vtk~~gf~a~mrvRt-StGirv~~f~-Gnf~~-----~~~tDiela~lD~dkt~~v~fkhDdkLq~~s------- 714 (1007)
T KOG1984|consen 649 DLVRNVTKKQGFDAVMRVRT-STGIRVQDFY-GNFLM-----RNPTDIELAALDCDKTLTVEFKHDDKLQDGS------- 714 (1007)
T ss_pred HHHHhcccceeeeeEEEEee-cCceeeeeee-chhhh-----cCCCCccccccccCceeEEEEeccccccCCc-------
Confidence 67777888899999999998 7899998874 33322 2346788999988777777776664443333
Q ss_pred cceEEEEEEEecCCCCceeeeecce
Q 043643 442 TALLDVFCTHKDSASMEIHQVEGEK 466 (634)
Q Consensus 442 ~~l~~v~~~Y~~~~~~~~~~~~~~~ 466 (634)
...+|..+.|+...+.+.+++.+-.
T Consensus 715 ~~~fQ~AlLYTti~G~RR~Rv~Nls 739 (1007)
T KOG1984|consen 715 DVHFQTALLYTTIDGQRRLRVLNLS 739 (1007)
T ss_pred ceeEEEEEEEeccCCceeEEEEecc
Confidence 5789999999999888888875443
No 49
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=99.35 E-value=2.9e-11 Score=115.96 Aligned_cols=158 Identities=18% Similarity=0.248 Sum_probs=114.0
Q ss_pred eEEEEEeCCCCCCc-----cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHH-hc---CCC
Q 043643 169 DLVTVLDVSGSMSS-----KLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAI-NT---LSS 239 (634)
Q Consensus 169 dlv~VlD~SgSM~g-----kl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I-~~---l~~ 239 (634)
-|++|||+||||.+ ..+.+-+-+.-+..+|.++-.+-++.|++....+-+++ ..+.....+.+ .+ +..
T Consensus 3 rV~LVLD~SGSM~~~yk~G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~~~~~~~vt---~~~~~~~v~~~~~~~~~~~~ 79 (200)
T PF10138_consen 3 RVYLVLDISGSMRPLYKDGTVQRVVERILALAAQFDDDGEIDVWFFSTEFDRLPDVT---LDNYEGYVDELHAGLPDWGR 79 (200)
T ss_pred EEEEEEeCCCCCchhhhCccHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCcCCCcC---HHHHHHHHHHHhccccccCC
Confidence 48999999999997 55555555555666788888899999999988876665 23333222222 22 244
Q ss_pred CCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCC
Q 043643 240 NGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPT 319 (634)
Q Consensus 240 ~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~ 319 (634)
.|+|+...+|+..++....+.....+..|+++|||.++. .....+++. ++...+
T Consensus 80 ~G~t~y~~vm~~v~~~y~~~~~~~~P~~VlFiTDG~~~~------------------~~~~~~~i~--------~as~~p 133 (200)
T PF10138_consen 80 MGGTNYAPVMEDVLDHYFKREPSDAPALVLFITDGGPDD------------------RRAIEKLIR--------EASDEP 133 (200)
T ss_pred CCCcchHHHHHHHHHHHhhcCCCCCCeEEEEEecCCccc------------------hHHHHHHHH--------hccCCC
Confidence 588999999999999987665555567899999999762 345555544 345778
Q ss_pred eeEEEEEccCCCChHHHHHHHhhc-----CCeEEEcCChhhH
Q 043643 320 FPVHTFGFGLEHDSEAMHAIADAS-----GGTFSFIETLSIL 356 (634)
Q Consensus 320 i~I~t~G~G~~~d~~~L~~iA~~t-----gG~~~~i~~~~~l 356 (634)
|-+-.||||.+- -..|++|.+.. +-.|+.+++...+
T Consensus 134 ifwqFVgiG~~~-f~fL~kLD~l~gR~vDNa~Ff~~~d~~~l 174 (200)
T PF10138_consen 134 IFWQFVGIGDSN-FGFLEKLDDLAGRVVDNAGFFAIDDIDEL 174 (200)
T ss_pred eeEEEEEecCCc-chHHHHhhccCCcccCCcCeEecCCcccC
Confidence 888899999754 78999998853 3447888876554
No 50
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=99.34 E-value=4.7e-11 Score=120.79 Aligned_cols=186 Identities=18% Similarity=0.217 Sum_probs=124.5
Q ss_pred CceEEEEEEeCCCCCCCCCCCCceEEEEEeCCCCCCc------cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEEcC
Q 043643 146 PKFAVLLRVCAPSLPNDADRAPIDLVTVLDVSGSMSS------KLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFPL 219 (634)
Q Consensus 146 ~~~~v~v~~~ap~~~~~~~r~p~dlv~VlD~SgSM~g------kl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~pl 219 (634)
.+-.+.++-.-| ...+.+++++||.|.||.. +++ .|..+..++..|. .+++||+.|++++..+.|+
T Consensus 45 ~~dkIwlRRtkp------skr~~qIvlaID~S~SM~~~~~~~~ale-ak~lIs~al~~Le-~g~vgVv~Fg~~~~~v~Pl 116 (266)
T cd01460 45 RKDKIWLRRTKP------AKRDYQILIAIDDSKSMSENNSKKLALE-SLCLVSKALTLLE-VGQLGVCSFGEDVQILHPF 116 (266)
T ss_pred cCCceEEEeccC------CccCceEEEEEecchhcccccccccHHH-HHHHHHHHHHhCc-CCcEEEEEeCCCceEeCCC
Confidence 344566666655 3357999999999999985 555 6667777777665 7999999999999999999
Q ss_pred cccCHHHHHHHHHHHhcC-CCCCCCcHHHHHHHHHHHHHhhccC--CC--CcEEEEEeCCC--CCCCCCCCcccccccCC
Q 043643 220 QRMTDSGRENAIRAINTL-SSNGGTNIVEGLKKGARVLEERRER--SP--VASIILLSDGQ--DTHNVLRNSYTQDEASS 292 (634)
Q Consensus 220 ~~~t~~~~~~~~~~I~~l-~~~GgT~i~~aL~~A~~~l~~~~~~--~~--~~~IILlTDG~--~~~g~~~~~~~~~~~~~ 292 (634)
+. +.+.+...+.++.. ...++||+..+|..+.+.+...... .. .+.|||+|||. .+.+.
T Consensus 117 t~--d~~~~a~~~~l~~~~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~------------ 182 (266)
T cd01460 117 DE--QFSSQSGPRILNQFTFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGA------------ 182 (266)
T ss_pred CC--CchhhHHHHHhCcccCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccH------------
Confidence 93 22224555566553 3458999999999999999765321 11 26799999999 54321
Q ss_pred CCCCHHHHHhhchhhhhccccccCCCCeeEEEEEccCCC-ChHHH----------------HHHHhhcCCeEEEcCChhh
Q 043643 293 IPSNELAYLNLLPSSICLSKREAGQPTFPVHTFGFGLEH-DSEAM----------------HAIADASGGTFSFIETLSI 355 (634)
Q Consensus 293 ~~~~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~~-d~~~L----------------~~iA~~tgG~~~~i~~~~~ 355 (634)
....+. .+...+|.++.|++-+.. +...+ .-+-...--.|..+.|.++
T Consensus 183 -------~~~~~r--------~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~~~~~~ 247 (266)
T cd01460 183 -------QKVRLR--------EAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIVRDLNQ 247 (266)
T ss_pred -------HHHHHH--------HHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEecChhH
Confidence 111111 234578999999986541 11221 1122222233556788888
Q ss_pred HHHHHHHHhhccc
Q 043643 356 LQDAFARCIGGLL 368 (634)
Q Consensus 356 l~~~f~~~l~~l~ 368 (634)
|+..++.++....
T Consensus 248 lp~~l~~~lrqwf 260 (266)
T cd01460 248 LPSVLSDALRQWF 260 (266)
T ss_pred hHHHHHHHHHHHH
Confidence 8888888776543
No 51
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=99.25 E-value=6.7e-11 Score=117.89 Aligned_cols=143 Identities=13% Similarity=0.176 Sum_probs=98.1
Q ss_pred eEEEEEeCCCCCC----c----cHHHHHHHHHHHHHh---cCCCCeEEEEEeCCCc----------EEEEcCcccCHHHH
Q 043643 169 DLVTVLDVSGSMS----S----KLPLLKRAVHFIIQN---LGSADRLSIVIFSSVA----------RRIFPLQRMTDSGR 227 (634)
Q Consensus 169 dlv~VlD~SgSM~----g----kl~~~K~al~~li~~---L~~~drvsIV~Fs~~a----------~~~~pl~~~t~~~~ 227 (634)
.++|+||+|.||. + +++.++.++..++.+ -.++|++|||.|++.. .++.|+...+....
T Consensus 3 ~ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~~~l~~~~~~~l 82 (218)
T cd01458 3 SVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVLLDLDTPGAERV 82 (218)
T ss_pred EEEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEeecCCCCCHHHH
Confidence 3799999999994 1 899999999999987 4789999999999974 23445543343333
Q ss_pred HHHHHHHhcC--------CCCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHH
Q 043643 228 ENAIRAINTL--------SSNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELA 299 (634)
Q Consensus 228 ~~~~~~I~~l--------~~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~ 299 (634)
..+.+.++.- ...++|++..||..|.++|.....+...+.|||||||.+..+... .....
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~~~~~------------~~~~~ 150 (218)
T cd01458 83 EDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPHGGDS------------IKDSQ 150 (218)
T ss_pred HHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCCCCCH------------HHHHH
Confidence 4444433221 134689999999999999987433445678999999987653110 01112
Q ss_pred HHhhchhhhhccccccCCCCeeEEEEEccCCC
Q 043643 300 YLNLLPSSICLSKREAGQPTFPVHTFGFGLEH 331 (634)
Q Consensus 300 ~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~~ 331 (634)
+...+. +....+|.|++||+|...
T Consensus 151 ~~~~a~--------~l~~~gI~i~~i~i~~~~ 174 (218)
T cd01458 151 AAVKAE--------DLKDKGIELELFPLSSPG 174 (218)
T ss_pred HHHHHH--------HHHhCCcEEEEEecCCCC
Confidence 222211 334579999999998753
No 52
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.17 E-value=9.4e-12 Score=90.91 Aligned_cols=44 Identities=39% Similarity=0.979 Sum_probs=36.7
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICR 47 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr 47 (634)
|+|+||++.+.. +..++.++|+|.||..||..|++. +..||+||
T Consensus 1 d~C~IC~~~~~~--~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFED--GEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHT--TSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCCcCCChhhcC--CCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 689999999976 445667789999999999999987 45999997
No 53
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=99.13 E-value=2.7e-08 Score=109.70 Aligned_cols=288 Identities=14% Similarity=0.158 Sum_probs=188.6
Q ss_pred EEEEEEeCCCCCCCCCCCCceEEEEEeCCCC--CCccHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCcEEEE------
Q 043643 149 AVLLRVCAPSLPNDADRAPIDLVTVLDVSGS--MSSKLPLLKRAVHFIIQNL---GSADRLSIVIFSSVARRIF------ 217 (634)
Q Consensus 149 ~v~v~~~ap~~~~~~~r~p~dlv~VlD~SgS--M~gkl~~~K~al~~li~~L---~~~drvsIV~Fs~~a~~~~------ 217 (634)
.-++.+.+|........+|.-+||+||+|-. |.|-...+-+++..-++.+ .+..|++||.|++...-+-
T Consensus 258 ~~vvdf~ap~~Y~~~~p~P~~yvFlIDVS~~a~~~g~~~a~~r~Il~~l~~~~~~dpr~kIaii~fD~sl~ffk~s~d~~ 337 (861)
T COG5028 258 SGVVDFLAPKEYSLRQPPPPVYVFLIDVSFEAIKNGLVKAAIRAILENLDQIPNFDPRTKIAIICFDSSLHFFKLSPDLD 337 (861)
T ss_pred ceeeEEecccceeeccCCCCEEEEEEEeehHhhhcchHHHHHHHHHhhccCCCCCCCcceEEEEEEcceeeEEecCCCCc
Confidence 4568899998877777889999999999943 3334555555555555544 3578999999998754321
Q ss_pred -----------cCcccC-------H----HHHHHHHHHHhcCCCC-C--CCcHHHHHHHHHHHHHhhccCCCCcEEEEEe
Q 043643 218 -----------PLQRMT-------D----SGRENAIRAINTLSSN-G--GTNIVEGLKKGARVLEERRERSPVASIILLS 272 (634)
Q Consensus 218 -----------pl~~~t-------~----~~~~~~~~~I~~l~~~-G--gT~i~~aL~~A~~~l~~~~~~~~~~~IILlT 272 (634)
|+-+.. - .+.+.+...+..+-.+ + ..+++.||+.|..++....+ .||.+.
T Consensus 338 ~~~~~vsdld~pFlPf~s~~fv~pl~~~k~~~etLl~~~~~If~d~~~pk~~~G~aLk~a~~l~g~~GG-----kii~~~ 412 (861)
T COG5028 338 EQMLIVSDLDEPFLPFPSGLFVLPLKSCKQIIETLLDRVPRIFQDNKSPKNALGPALKAAKSLIGGTGG-----KIIVFL 412 (861)
T ss_pred cceeeecccccccccCCcchhcccHHHHHHHHHHHHHHhhhhhcccCCCccccCHHHHHHHHHhhccCc-----eEEEEe
Confidence 111111 0 1122345555555333 2 45789999999998865543 377777
Q ss_pred CCCCCCCCCCCccccc-ccCCCCCCHHHHHhhchhhhhccccccCCCCeeEEEEEccCC-CChHHHHHHHhhcCCeEEEc
Q 043643 273 DGQDTHNVLRNSYTQD-EASSIPSNELAYLNLLPSSICLSKREAGQPTFPVHTFGFGLE-HDSEAMHAIADASGGTFSFI 350 (634)
Q Consensus 273 DG~~~~g~~~~~~~~~-~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~-~d~~~L~~iA~~tgG~~~~i 350 (634)
--.||.|.+....+.+ +.....-...-|+++ +.+..+.+|.|..|-+..+ .|.+.+..++..|+|.-+|.
T Consensus 413 stlPn~G~Gkl~~r~d~e~~ll~c~d~fYk~~--------a~e~~k~gIsvd~Flt~~~yidvaTls~l~~~T~G~~~~Y 484 (861)
T COG5028 413 STLPNMGIGKLQLREDKESSLLSCKDSFYKEF--------AIECSKVGISVDLFLTSEDYIDVATLSHLCRYTGGQTYFY 484 (861)
T ss_pred ecCCCcccccccccccchhhhccccchHHHHH--------HHHHHHhcceEEEEeccccccchhhhcchhhccCcceEEc
Confidence 7789988876522222 111111111112222 1244567899999988655 47889999999999997776
Q ss_pred CChhh----HHHHHHHHh-hccccceeeeeEEEEEecCCCeEEEEecCCCCCcccccCCceeEEEcCCccCCcEEEEEEE
Q 043643 351 ETLSI----LQDAFARCI-GGLLSVVSQDVKLTIRSKSAGVRIGSIPSGRYNSEVLDEGQQAVIDIGNLYADEEKEFMVY 425 (634)
Q Consensus 351 ~~~~~----l~~~f~~~l-~~l~s~va~~~~l~v~~~~~~v~i~~v~~~~~~~~~~~~~~~~~i~lg~l~~~e~r~~lv~ 425 (634)
+++.. -...|++.+ ..+...+.-++.++++| +.|+++.+++ |++..+ ......++.+..+++-.|+|.
T Consensus 485 p~f~~~~~~d~~kl~~dL~~~ls~~~gy~~~~rvR~-S~glr~s~fy-Gnf~~r-----s~dl~~F~tm~rd~Sl~~~~s 557 (861)
T COG5028 485 PNFSATRPNDATKLANDLVSHLSMEIGYEAVMRVRC-STGLRVSSFY-GNFFNR-----SSDLCAFSTMPRDTSLLVEFS 557 (861)
T ss_pred CCcccCCchhHHHHHHHHHHhhhhhhhhheeeEeec-cCceehhhhh-cccccc-----CcccccccccCCCceEEEEEE
Confidence 65432 112244444 34444688899999998 7899998874 444332 456788999999999888888
Q ss_pred EEcCCCCCCCCCCCCccceEEEEEEEecCCCCceeeeec
Q 043643 426 LSIPVSSAEGEQRPECTALLDVFCTHKDSASMEIHQVEG 464 (634)
Q Consensus 426 l~~p~~~~~~~~~~~~~~l~~v~~~Y~~~~~~~~~~~~~ 464 (634)
++-+... . ...+||.+.|+...+.+.+++.+
T Consensus 558 id~~l~~-~-------~v~fQvAlL~T~~~GeRRiRVvn 588 (861)
T COG5028 558 IDEKLMT-S-------DVYFQVALLYTLNDGERRIRVVN 588 (861)
T ss_pred ecccccC-C-------ceEEEEEEEeeccCCceEEEEEE
Confidence 8744332 2 56799999999998888888743
No 54
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=99.07 E-value=5.1e-09 Score=105.93 Aligned_cols=180 Identities=17% Similarity=0.192 Sum_probs=121.0
Q ss_pred CCceEEEEEeCCCCCCc--cHHHHHHHHHHHHHhcCCC---CeEEEEEeCCCcEEE-------------E--------cC
Q 043643 166 APIDLVTVLDVSGSMSS--KLPLLKRAVHFIIQNLGSA---DRLSIVIFSSVARRI-------------F--------PL 219 (634)
Q Consensus 166 ~p~dlv~VlD~SgSM~g--kl~~~K~al~~li~~L~~~---drvsIV~Fs~~a~~~-------------~--------pl 219 (634)
.|.-++||||+|-.-.. -++.+++++...++.++++ .+||||+|++..... . |+
T Consensus 2 ~pp~~~FvIDvs~~a~~~g~~~~~~~si~~~L~~lp~~~~~~~VgiITfd~~v~~y~l~~~~~~~q~~vv~dl~d~f~P~ 81 (244)
T cd01479 2 QPAVYVFLIDVSYNAIKSGLLATACEALLSNLDNLPGDDPRTRVGFITFDSTLHFFNLKSSLEQPQMMVVSDLDDPFLPL 81 (244)
T ss_pred CCCEEEEEEEccHHHHhhChHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCeEEEEECCCCCCCCeEEEeeCcccccCCC
Confidence 57889999999864432 6899999999999999866 899999999865321 0 11
Q ss_pred -----cccCHHHHHHHHHHHhcCC------CCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCccccc
Q 043643 220 -----QRMTDSGRENAIRAINTLS------SNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQD 288 (634)
Q Consensus 220 -----~~~t~~~~~~~~~~I~~l~------~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~ 288 (634)
.++ .+.+..+.+.|+.|. ...++.++.||+.|..+|+... ..|++++.|.++.|.+....+..
T Consensus 82 ~~~~lv~l-~e~~~~i~~lL~~L~~~~~~~~~~~~c~G~Al~~A~~lL~~~G-----GkIi~f~s~~pt~GpG~l~~~~~ 155 (244)
T cd01479 82 PDGLLVNL-KESRQVIEDLLDQIPEMFQDTKETESALGPALQAAFLLLKETG-----GKIIVFQSSLPTLGAGKLKSRED 155 (244)
T ss_pred CcceeecH-HHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhcC-----CEEEEEeCCCCCcCCcccccCcc
Confidence 011 234566666666652 2347889999999999998433 45999999999999776422222
Q ss_pred ccCCCCCCHHHHHhhchhhhhccccccCCCCeeEEEEEccCC-CChHHHHHHHhhcCCeEEEcC
Q 043643 289 EASSIPSNELAYLNLLPSSICLSKREAGQPTFPVHTFGFGLE-HDSEAMHAIADASGGTFSFIE 351 (634)
Q Consensus 289 ~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~-~d~~~L~~iA~~tgG~~~~i~ 351 (634)
........+..+..-..+.++..+..+...+|.|+.|.+..+ .|-..|..+++.|||..++.+
T Consensus 156 ~~~~~~~~e~~~~~p~~~fY~~la~~~~~~~isvDlF~~~~~~~dla~l~~l~~~TGG~v~~y~ 219 (244)
T cd01479 156 PKLLSTDKEKQLLQPQTDFYKKLALECVKSQISVDLFLFSNQYVDVATLGCLSRLTGGQVYYYP 219 (244)
T ss_pred ccccCchhhhhhcCcchHHHHHHHHHHHHcCeEEEEEEccCcccChhhhhhhhhhcCceEEEEC
Confidence 111010001001000011222223355678999999998765 577899999999999998888
No 55
>PRK10997 yieM hypothetical protein; Provisional
Probab=99.06 E-value=3.4e-09 Score=115.32 Aligned_cols=146 Identities=19% Similarity=0.203 Sum_probs=102.8
Q ss_pred CCCCceEEEEEeCCCCCCc-cHHHHHHHHHHHH-HhcCCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCCCCC
Q 043643 164 DRAPIDLVTVLDVSGSMSS-KLPLLKRAVHFII-QNLGSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLSSNG 241 (634)
Q Consensus 164 ~r~p~dlv~VlD~SgSM~g-kl~~~K~al~~li-~~L~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~~~G 241 (634)
....-.++++||+||||.| +...+|..+..+. -.+..+|+++++.|++..... +++ ...++..+...+... .+|
T Consensus 320 ~~~kGpiII~VDtSGSM~G~ke~~AkalAaAL~~iAl~q~dr~~li~Fs~~i~~~-~l~--~~~gl~~ll~fL~~~-f~G 395 (487)
T PRK10997 320 EQPRGPFIVCVDTSGSMGGFNEQCAKAFCLALMRIALAENRRCYIMLFSTEVVTY-ELT--GPDGLEQAIRFLSQS-FRG 395 (487)
T ss_pred CCCCCcEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCceee-ccC--CccCHHHHHHHHHHh-cCC
Confidence 3456779999999999999 8888887444433 357789999999999987654 444 234567777777654 589
Q ss_pred CCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCCee
Q 043643 242 GTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPTFP 321 (634)
Q Consensus 242 gT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i~ 321 (634)
||++..+|..+++.+.....++.. ||++||+..... ..++.+.+. .++ ...+..
T Consensus 396 GTDl~~aL~~al~~l~~~~~r~ad--IVVISDF~~~~~-----------------~eel~~~L~-~Lk------~~~~~r 449 (487)
T PRK10997 396 GTDLAPCLRAIIEKMQGREWFDAD--AVVISDFIAQRL-----------------PDELVAKVK-ELQ------RQHQHR 449 (487)
T ss_pred CCcHHHHHHHHHHHHcccccCCce--EEEECCCCCCCC-----------------hHHHHHHHH-HHH------HhcCcE
Confidence 999999999999999765444444 999999975421 122332222 111 247889
Q ss_pred EEEEEccCCCChHHHHHHH
Q 043643 322 VHTFGFGLEHDSEAMHAIA 340 (634)
Q Consensus 322 I~t~G~G~~~d~~~L~~iA 340 (634)
+|++-+|...++..+ .|.
T Consensus 450 f~~l~i~~~~~p~l~-~if 467 (487)
T PRK10997 450 FHAVAMSAHGKPGIM-RIF 467 (487)
T ss_pred EEEEEeCCCCCchHH-Hhc
Confidence 999999975565554 443
No 56
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.02 E-value=1.7e-10 Score=94.28 Aligned_cols=52 Identities=33% Similarity=0.784 Sum_probs=43.6
Q ss_pred CCccccccccc--------cCCcceeEecCCCCccchhhHHHHHhc--CCCcCccccccccc
Q 043643 1 KTCPICLGSLR--------RGQGVAIFTAECSHSFHFCCIAANVQH--GNRICPICRCEWKD 52 (634)
Q Consensus 1 ~~C~ICl~~~~--------~~~~~~~~~~~C~H~Fh~~Ci~~w~~~--~~~~CP~Cr~~~~~ 52 (634)
|.|+||...|. +|+..+++...|+|.||.+||.+|+.. .+..||+||++|..
T Consensus 22 d~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 22 DVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 57999999885 456678888999999999999999974 35689999999864
No 57
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=99.02 E-value=7.4e-09 Score=104.63 Aligned_cols=185 Identities=17% Similarity=0.206 Sum_probs=122.8
Q ss_pred CCceEEEEEeCCCC-CCc-cHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCcEEEE--------------cC----cccC
Q 043643 166 APIDLVTVLDVSGS-MSS-KLPLLKRAVHFIIQNLG--SADRLSIVIFSSVARRIF--------------PL----QRMT 223 (634)
Q Consensus 166 ~p~dlv~VlD~SgS-M~g-kl~~~K~al~~li~~L~--~~drvsIV~Fs~~a~~~~--------------pl----~~~t 223 (634)
.|.-++||||+|.. ... -++.+++++...++.|+ ++.||+||+|++.+...- .+ .++.
T Consensus 2 ~pp~~vFvID~s~~ai~~~~l~~~~~sl~~~l~~lp~~~~~~igiITf~~~V~~~~~~~~~~~~~~~v~~dl~d~f~p~~ 81 (239)
T cd01468 2 QPPVFVFVIDVSYEAIKEGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLSSDLAQPKMYVVSDLKDVFLPLP 81 (239)
T ss_pred CCCEEEEEEEcchHhccccHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCeEEEEECCCCCCCCeEEEeCCCccCcCCCc
Confidence 57789999999975 333 89999999999999998 899999999987653210 00 0110
Q ss_pred -------HHHHHHHHHHHhcCCC--------CCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCccccc
Q 043643 224 -------DSGRENAIRAINTLSS--------NGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQD 288 (634)
Q Consensus 224 -------~~~~~~~~~~I~~l~~--------~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~ 288 (634)
.+.+..+.+.++.|.. ..+..++.||..|..+|+... ....|++++.|.++.|.+....+..
T Consensus 82 ~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~---~gGkI~~f~sg~pt~GpG~l~~~~~ 158 (239)
T cd01468 82 DRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTF---AGGRIIVFQGGLPTVGPGKLKSRED 158 (239)
T ss_pred CceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcC---CCceEEEEECCCCCCCCCccccCcc
Confidence 1334556666666533 235789999999999998762 2345999999999998776422211
Q ss_pred ccCCCCCCHHHHHhhchhhhhccccccCCCCeeEEEEEccCC-CChHHHHHHHhhcCCeEEEcCCh
Q 043643 289 EASSIPSNELAYLNLLPSSICLSKREAGQPTFPVHTFGFGLE-HDSEAMHAIADASGGTFSFIETL 353 (634)
Q Consensus 289 ~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~-~d~~~L~~iA~~tgG~~~~i~~~ 353 (634)
........+..+..-..+.++..+..+...+|.|+.|.++.+ .|-..|..+++.|||..++.++.
T Consensus 159 ~~~~~~~~e~~~~~~a~~fY~~la~~~~~~~isvdlF~~~~~~~dl~~l~~l~~~TGG~v~~y~~f 224 (239)
T cd01468 159 KEPIRSHDEAQLLKPATKFYKSLAKECVKSGICVDLFAFSLDYVDVATLKQLAKSTGGQVYLYDSF 224 (239)
T ss_pred cccCCCccchhcccccHHHHHHHHHHHHHcCeEEEEEeccccccCHHHhhhhhhcCCceEEEeCCC
Confidence 101000000000000011122222345568999999998876 57789999999999999999887
No 58
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4.5e-10 Score=115.86 Aligned_cols=49 Identities=33% Similarity=0.847 Sum_probs=41.4
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWK 51 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~ 51 (634)
++|+||+|.|..|+. ...++|+|.||..||..|+...+..||+|+....
T Consensus 230 ~~CaIClEdY~~Gdk--lRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDK--LRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCe--eeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 489999999999544 4558999999999999999876667999998643
No 59
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.97 E-value=3.4e-09 Score=113.07 Aligned_cols=144 Identities=21% Similarity=0.273 Sum_probs=101.6
Q ss_pred eEEEEEeCCCCCCc-cHHHHHHHHHHHHH-hcCCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCCCCCCCcHH
Q 043643 169 DLVTVLDVSGSMSS-KLPLLKRAVHFIIQ-NLGSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLSSNGGTNIV 246 (634)
Q Consensus 169 dlv~VlD~SgSM~g-kl~~~K~al~~li~-~L~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~~~GgT~i~ 246 (634)
.++++||.||||.| +...+|..+..++. .|..+-++.++.|++....+-...+ ..+...+.+.+....++| |++.
T Consensus 274 pvilllD~SGSM~G~~e~~AKAvalAl~~~alaenR~~~~~lF~s~~~~~el~~k--~~~~~e~i~fL~~~f~GG-TD~~ 350 (437)
T COG2425 274 PVILLLDKSGSMSGFKEQWAKAVALALMRIALAENRDCYVILFDSEVIEYELYEK--KIDIEELIEFLSYVFGGG-TDIT 350 (437)
T ss_pred CEEEEEeCCCCcCCcHHHHHHHHHHHHHHHHHHhccceEEEEecccceeeeecCC--ccCHHHHHHHHhhhcCCC-CChH
Confidence 48999999999999 99999975555443 5667889999999994332221111 124667777776665555 9999
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCCeeEEEEE
Q 043643 247 EGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPTFPVHTFG 326 (634)
Q Consensus 247 ~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G 326 (634)
.+|..|++.++++...+ .-||++|||.+... .++...+.. ..+..+..+|++-
T Consensus 351 ~~l~~al~~~k~~~~~~--adiv~ITDg~~~~~------------------~~~~~~v~e-------~~k~~~~rl~aV~ 403 (437)
T COG2425 351 KALRSALEDLKSRELFK--ADIVVITDGEDERL------------------DDFLRKVKE-------LKKRRNARLHAVL 403 (437)
T ss_pred HHHHHHHHHhhcccccC--CCEEEEeccHhhhh------------------hHHHHHHHH-------HHHHhhceEEEEE
Confidence 99999999999877666 45999999987631 122222221 1235788999999
Q ss_pred ccCCCChHHHHHHHhhc
Q 043643 327 FGLEHDSEAMHAIADAS 343 (634)
Q Consensus 327 ~G~~~d~~~L~~iA~~t 343 (634)
+|. ++..-|..|++..
T Consensus 404 I~~-~~~~~l~~Isd~~ 419 (437)
T COG2425 404 IGG-YGKPGLMRISDHI 419 (437)
T ss_pred ecC-CCCcccceeeeee
Confidence 995 5555666776654
No 60
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.95 E-value=4.1e-10 Score=91.50 Aligned_cols=46 Identities=37% Similarity=0.890 Sum_probs=36.4
Q ss_pred CCccccccccccC--------CcceeEecCCCCccchhhHHHHHhcCCCcCcccc
Q 043643 1 KTCPICLGSLRRG--------QGVAIFTAECSHSFHFCCIAANVQHGNRICPICR 47 (634)
Q Consensus 1 ~~C~ICl~~~~~~--------~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr 47 (634)
|.|+||++.|.+. ++..+....|||.||.+||.+|++. +.+||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 5799999999422 2456677899999999999999987 44999997
No 61
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.91 E-value=8.4e-10 Score=79.34 Aligned_cols=39 Identities=33% Similarity=0.796 Sum_probs=30.4
Q ss_pred ccccccccccCCcceeEecCCCCccchhhHHHHHhcCC---CcCccc
Q 043643 3 CPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGN---RICPIC 46 (634)
Q Consensus 3 C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~---~~CP~C 46 (634)
|+||++.|.+ |++++|||+||..||.+|++... ..||.|
T Consensus 1 CpiC~~~~~~-----Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD-----PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS-----EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC-----ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999 99999999999999999886322 469988
No 62
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=98.90 E-value=1.2e-08 Score=103.32 Aligned_cols=185 Identities=18% Similarity=0.218 Sum_probs=109.9
Q ss_pred CCceEEEEEeCCCC-CC-ccHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCcEEEE---------------------c--
Q 043643 166 APIDLVTVLDVSGS-MS-SKLPLLKRAVHFIIQNLG--SADRLSIVIFSSVARRIF---------------------P-- 218 (634)
Q Consensus 166 ~p~dlv~VlD~SgS-M~-gkl~~~K~al~~li~~L~--~~drvsIV~Fs~~a~~~~---------------------p-- 218 (634)
.|.-++||||+|.. .. |-++.+++++...++.|. ++.||+||+|++.+...- |
T Consensus 2 ~pp~y~FvID~s~~av~~g~~~~~~~sl~~~l~~l~~~~~~~vgiitfd~~V~~y~l~~~~~~~~~~v~~dl~~~~~p~~ 81 (243)
T PF04811_consen 2 QPPVYVFVIDVSYEAVQSGLLQSLIESLKSALDSLPGDERTRVGIITFDSSVHFYNLSSSLSQPQMIVVSDLDDPFIPLP 81 (243)
T ss_dssp S--EEEEEEE-SHHHHHHTHHHHHHHHHHHHGCTSSTSTT-EEEEEEESSSEEEEETTTTSSSTEEEEEHHTTSHHSSTS
T ss_pred CCCEEEEEEECchhhhhccHHHHHHHHHHHHHHhccCCCCcEEEEEEeCCEEEEEECCCCcCCCcccchHHHhhcccCCc
Confidence 57789999999954 22 389999999999999999 899999999998764331 0
Q ss_pred ---CcccCHHHHHHHHHHHhcC---C-----CCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCC-CCccc
Q 043643 219 ---LQRMTDSGRENAIRAINTL---S-----SNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVL-RNSYT 286 (634)
Q Consensus 219 ---l~~~t~~~~~~~~~~I~~l---~-----~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~-~~~~~ 286 (634)
+.++. +.+..+...|+.| . ......++.||+.|..+|+... ....|++++-|.++.|.+ ....+
T Consensus 82 ~~llv~~~-e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~---~gGkI~~F~s~~pt~G~Gg~l~~~ 157 (243)
T PF04811_consen 82 DGLLVPLS-ECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRN---TGGKILVFTSGPPTYGPGGSLKKR 157 (243)
T ss_dssp SSSSEETT-TCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHT---S-EEEEEEESS---SSSTTSS-SB
T ss_pred ccEEEEhH-HhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhccc---cCCEEEEEeccCCCCCCCceeccc
Confidence 11111 2344455555543 2 2346789999999999998443 235699999999999873 22111
Q ss_pred ccccCCCCCCH-HHHHhhchhhhhccccccCCCCeeEEEEEccCC-CChHHHHHHHhhcCCeEEEcCChh
Q 043643 287 QDEASSIPSNE-LAYLNLLPSSICLSKREAGQPTFPVHTFGFGLE-HDSEAMHAIADASGGTFSFIETLS 354 (634)
Q Consensus 287 ~~~~~~~~~~~-~~~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~-~d~~~L~~iA~~tgG~~~~i~~~~ 354 (634)
......+...+ ..+..-..+.++..+..+...+|.|+.|.++.+ .+-..|..++..|||..++.++..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~~~l~tl~~l~~~TGG~l~~y~~f~ 227 (243)
T PF04811_consen 158 EDSSHYDTEKEKALLLPPANEFYKKLAEECSKQGISVDLFVFSSDYVDLATLGPLARYTGGSLYYYPNFN 227 (243)
T ss_dssp TTSCCCCHCTTHHCHSHSSSHHHHHHHHHHHHCTEEEEEEEECSS--SHHHHTHHHHCTT-EEEEETTTT
T ss_pred ccccccccccchhhhccccchHHHHHHHHHHhcCCEEEEEeecCCCCCcHhHHHHHHhCceeEEEeCCCC
Confidence 11111110000 000000000122222244568999999999875 578899999999999999999877
No 63
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=98.88 E-value=1.5e-07 Score=96.17 Aligned_cols=193 Identities=15% Similarity=0.120 Sum_probs=128.2
Q ss_pred CCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEEcCcc-----------------------
Q 043643 166 APIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFPLQR----------------------- 221 (634)
Q Consensus 166 ~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~pl~~----------------------- 221 (634)
.|.-++||||+|- .. .++.+|+++...++.|+++.+||||+|++.+...- |..
T Consensus 2 ~pp~~vFviDvs~--~~~el~~l~~sl~~~L~~lP~~a~VGlITfd~~V~~~~-L~~~~~~~~~vf~g~~~~~~~~~~~~ 78 (267)
T cd01478 2 SPPVFLFVVDTCM--DEEELDALKESLIMSLSLLPPNALVGLITFGTMVQVHE-LGFEECSKSYVFRGNKDYTAKQIQDM 78 (267)
T ss_pred CCCEEEEEEECcc--CHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEE-cCCCcCceeeeccCCccCCHHHHHHH
Confidence 4677999999975 45 89999999999999999999999999998764321 110
Q ss_pred ------------------------cC--------HHHHHHHHHHHhcCCCC---------CCCcHHHHHHHHHHHHHhhc
Q 043643 222 ------------------------MT--------DSGRENAIRAINTLSSN---------GGTNIVEGLKKGARVLEERR 260 (634)
Q Consensus 222 ------------------------~t--------~~~~~~~~~~I~~l~~~---------GgT~i~~aL~~A~~~l~~~~ 260 (634)
+. .+.+..+...|+.|... ...+++.||..|..+|+..
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~p~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~A~~ll~~~- 157 (267)
T cd01478 79 LGLGGPAMRPSASQHPGAGNPLPSAAASRFLLPVSQCEFTLTDLLEQLQPDPWPVPAGHRPLRCTGVALSIAVGLLEAC- 157 (267)
T ss_pred hccccccccccccCcCCccccccccccccEEEEHHHHHHHHHHHHHhCcccccccCCCCCCCCchHHHHHHHHHHHHhh-
Confidence 00 12345566677777442 3578999999999999843
Q ss_pred cCCCCcEEEEEeCCCCCCCCCCCcccccc---cCCCCCCHH--HHHhhchhhhhccccccCCCCeeEEEEEccCC-CChH
Q 043643 261 ERSPVASIILLSDGQDTHNVLRNSYTQDE---ASSIPSNEL--AYLNLLPSSICLSKREAGQPTFPVHTFGFGLE-HDSE 334 (634)
Q Consensus 261 ~~~~~~~IILlTDG~~~~g~~~~~~~~~~---~~~~~~~~~--~~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~-~d~~ 334 (634)
.++....|++++-|.+|.|.+.-..+... +.+...... .+..-..+.++..+.++...++.|..|-++.+ .+-.
T Consensus 158 ~~~~gGki~~F~sg~pT~GpG~l~~r~~~~~~r~~~d~~~~~~~~~~~a~~fY~~la~~~~~~~vsvDlF~~s~d~vgla 237 (267)
T cd01478 158 FPNTGARIMLFAGGPCTVGPGAVVSTELKDPIRSHHDIDKDNAKYYKKAVKFYDSLAKRLAANGHAVDIFAGCLDQVGLL 237 (267)
T ss_pred cCCCCcEEEEEECCCCCCCCceeeccccccccccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEEeccccccCHH
Confidence 22334679999999999987754222111 011100000 01100111222223344567899988888765 5888
Q ss_pred HHHHHHhhcCCeEEEcCChhhHHHHHHHHh
Q 043643 335 AMHAIADASGGTFSFIETLSILQDAFARCI 364 (634)
Q Consensus 335 ~L~~iA~~tgG~~~~i~~~~~l~~~f~~~l 364 (634)
.|..+++.|||..++.+++.. ..|.+.+
T Consensus 238 em~~l~~~TGG~v~~~~~f~~--~~f~~s~ 265 (267)
T cd01478 238 EMKVLVNSTGGHVVLSDSFTT--SIFKQSF 265 (267)
T ss_pred HHHHHHHhcCcEEEEeCCcch--HHHHHHh
Confidence 999999999999999998864 3455543
No 64
>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.83 E-value=9.1e-08 Score=103.98 Aligned_cols=177 Identities=26% Similarity=0.388 Sum_probs=143.8
Q ss_pred CCCCCCCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhc-CC
Q 043643 161 NDADRAPIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINT-LS 238 (634)
Q Consensus 161 ~~~~r~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~-l~ 238 (634)
....+.+.++++++|.||||.+ .+..++.+...++..+.+.+.+++++|........+.. ...++..+...|+. +.
T Consensus 31 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~ 108 (399)
T COG2304 31 DLDLLVPANLTLAIDTSGSMTGALLELAKSAAIELVNGLNPGDLLSIVTFAGSADVLIPPT--GATNKESITAAIDQSLQ 108 (399)
T ss_pred ccccccCcceEEEeccCCCccchhHHHHHHHHHHHhcccCCCCceEEEEecCCcceecCcc--cccCHHHHHHHHhhhhc
Confidence 4577889999999999999999 99999999999999999999999999999777777766 33567888899988 89
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCC
Q 043643 239 SNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQP 318 (634)
Q Consensus 239 ~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~ 318 (634)
+.|.|.+..++..+++.+.....+.....+.+.|||..+.+... ......+.. .....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tdg~~~~~~~d--------------~~~~~~~~~--------~~~~~ 166 (399)
T COG2304 109 AGGATAVEASLSLAVELAAKALPRGTLNRILLLTDGENNLGLVD--------------PSRLSALAK--------LAAGK 166 (399)
T ss_pred cccccHHHHHHHHHHHHhhhcCCccceeeEeeeccCccccCCCC--------------HHHHHHHhc--------ccccC
Confidence 99999999999999999988777777888999999998865432 123322211 12346
Q ss_pred CeeEEEEEccCCCChHHHHHHHhhcCCeEEEcCChhhHHHHHH
Q 043643 319 TFPVHTFGFGLEHDSEAMHAIADASGGTFSFIETLSILQDAFA 361 (634)
Q Consensus 319 ~i~I~t~G~G~~~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f~ 361 (634)
++.+.++|+|.+.+...+..++....|.+.++.........|.
T Consensus 167 ~i~~~~~g~~~~~n~~~~~~~~~~~~g~l~~~~~~~~~~~~~~ 209 (399)
T COG2304 167 GIVLDTLGLGDDVNEDELTGIAAAANGNLAFIYLSSLSEAQFV 209 (399)
T ss_pred ceEEEEEecccccchhhhhhhhhccCcccccccCccccchhhh
Confidence 9999999999999999999999999998888776644333333
No 65
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.1e-09 Score=89.27 Aligned_cols=51 Identities=27% Similarity=0.720 Sum_probs=42.1
Q ss_pred CCccccccccc------------cCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 1 KTCPICLGSLR------------RGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 1 ~~C~ICl~~~~------------~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
|+|+||...+. ..+++......|+|.||++||.+|++. +..||+|.++|..
T Consensus 47 DnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlkt-r~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 47 DNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKT-RNVCPLDNKEWVF 109 (114)
T ss_pred chhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhh-cCcCCCcCcceeE
Confidence 67999988662 224667788999999999999999998 5589999999864
No 66
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=98.78 E-value=7.2e-08 Score=92.77 Aligned_cols=159 Identities=17% Similarity=0.290 Sum_probs=115.7
Q ss_pred EEeCCCCCCc------cHHHHHHHHHHHHHhc---CCCCeEEEEEeCCC-cEEEEcCcccCHHHHHHHHHHHh---cCCC
Q 043643 173 VLDVSGSMSS------KLPLLKRAVHFIIQNL---GSADRLSIVIFSSV-ARRIFPLQRMTDSGRENAIRAIN---TLSS 239 (634)
Q Consensus 173 VlD~SgSM~g------kl~~~K~al~~li~~L---~~~drvsIV~Fs~~-a~~~~pl~~~t~~~~~~~~~~I~---~l~~ 239 (634)
|||.|-+|.. |+..+.+++..|+..+ +|-.++|||+..+. ++.+.+|+ .+.....+++. .+.+
T Consensus 1 viD~S~~m~~~D~~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~~~~~a~~ls~ls----gn~~~h~~~L~~~~~~~~ 76 (193)
T PF04056_consen 1 VIDMSEAMREKDLKPTRLQCVLKALEEFVREFFDQNPISQLGIIVMRDGRAERLSELS----GNPQEHIEALKKLRKLEP 76 (193)
T ss_pred CeechHhHHhCcCCccHHHHHHHHHHHHHHHHHhcCChhheeeeeeecceeEEeeecC----CCHHHHHHHHHHhccCCC
Confidence 6999999985 8999999888888765 46689999999875 77888887 33444444444 4568
Q ss_pred CCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCC
Q 043643 240 NGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPT 319 (634)
Q Consensus 240 ~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~ 319 (634)
.|...+..||+.|...|...... ..+.|+++.-...+.. ..++.+.+. ..+..+
T Consensus 77 ~G~~SLqN~Le~A~~~L~~~p~~-~srEIlvi~gSl~t~D-----------------p~di~~ti~--------~l~~~~ 130 (193)
T PF04056_consen 77 SGEPSLQNGLEMARSSLKHMPSH-GSREILVIFGSLTTCD-----------------PGDIHETIE--------SLKKEN 130 (193)
T ss_pred CCChhHHHHHHHHHHHHhhCccc-cceEEEEEEeecccCC-----------------chhHHHHHH--------HHHHcC
Confidence 99999999999999999866432 3356777664444432 123444333 134579
Q ss_pred eeEEEEEccCCCChHHHHHHHhhcCCeEEEcCChhhHHHHHHHH
Q 043643 320 FPVHTFGFGLEHDSEAMHAIADASGGTFSFIETLSILQDAFARC 363 (634)
Q Consensus 320 i~I~t~G~G~~~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f~~~ 363 (634)
|+|++||++.. -..++.|++.|||+|.-+-|..-+.+.+...
T Consensus 131 IrvsvI~laaE--v~I~k~i~~~T~G~y~V~lde~H~~~lL~~~ 172 (193)
T PF04056_consen 131 IRVSVISLAAE--VYICKKICKETGGTYGVILDEDHFKELLMEH 172 (193)
T ss_pred CEEEEEEEhHH--HHHHHHHHHhhCCEEEEecCHHHHHHHHHhh
Confidence 99999999964 4589999999999999888887666555443
No 67
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.77 E-value=4.1e-09 Score=83.39 Aligned_cols=51 Identities=27% Similarity=0.675 Sum_probs=41.5
Q ss_pred CCcccccccc-----------ccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 1 KTCPICLGSL-----------RRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 1 ~~C~ICl~~~-----------~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
|.|+||...+ ..+++++++...|.|.||.+||.+|+.. +..||+||++|..
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~~ 82 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWVL 82 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeEE
Confidence 4566666555 4667888889999999999999999987 4589999999864
No 68
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.73 E-value=5.9e-09 Score=103.21 Aligned_cols=51 Identities=25% Similarity=0.615 Sum_probs=40.0
Q ss_pred CCccccccccccCCc---ceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 1 KTCPICLGSLRRGQG---VAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~---~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.+|+||++.+..... ...+..+|+|.||..||..|.+. ..+||+||..+..
T Consensus 175 ~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~~ 228 (238)
T PHA02929 175 KECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFIS 228 (238)
T ss_pred CCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEeeE
Confidence 369999998865221 12456789999999999999976 5689999998654
No 69
>PHA02926 zinc finger-like protein; Provisional
Probab=98.72 E-value=7.2e-09 Score=98.95 Aligned_cols=53 Identities=26% Similarity=0.619 Sum_probs=39.9
Q ss_pred CCccccccccccC----CcceeEecCCCCccchhhHHHHHhcC-----CCcCcccccccccC
Q 043643 1 KTCPICLGSLRRG----QGVAIFTAECSHSFHFCCIAANVQHG-----NRICPICRCEWKDV 53 (634)
Q Consensus 1 ~~C~ICl~~~~~~----~~~~~~~~~C~H~Fh~~Ci~~w~~~~-----~~~CP~Cr~~~~~~ 53 (634)
++|+||++.+... +....+..+|+|.||..||..|.+.. ...||+||..+...
T Consensus 171 ~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 171 KECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred CCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 4799999987431 12235668999999999999999642 34699999987643
No 70
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=98.71 E-value=6.5e-08 Score=96.59 Aligned_cols=109 Identities=28% Similarity=0.411 Sum_probs=71.8
Q ss_pred CCCCCceEEEEEeCCCCCCccHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHh--cCCCC
Q 043643 163 ADRAPIDLVTVLDVSGSMSSKLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAIN--TLSSN 240 (634)
Q Consensus 163 ~~r~p~dlv~VlD~SgSM~gkl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~--~l~~~ 240 (634)
.++.|..+|+|+|+||||.+.-..+-..+..+...+. ++.++.|++....+.+.-. ..+...+...+. ....+
T Consensus 53 r~~~~~~lvvl~DvSGSM~~~s~~~l~~~~~l~~~~~---~~~~f~F~~~l~~vT~~l~--~~~~~~~l~~~~~~~~~~~ 127 (222)
T PF05762_consen 53 RPRKPRRLVVLCDVSGSMAGYSEFMLAFLYALQRQFR---RVRVFVFSTRLTEVTPLLR--RRDPEEALARLSALVQSFG 127 (222)
T ss_pred ccCCCccEEEEEeCCCChHHHHHHHHHHHHHHHHhCC---CEEEEEEeeehhhhhhhhc--cCCHHHHHHHHHhhccCCC
Confidence 3556678999999999999722222233344444333 8999999998776664431 112223333333 23478
Q ss_pred CCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCC
Q 043643 241 GGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTH 278 (634)
Q Consensus 241 GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~ 278 (634)
|||+|+.+|..+.+.+....- ....||++|||..+.
T Consensus 128 GgTdi~~aL~~~~~~~~~~~~--~~t~vvIiSDg~~~~ 163 (222)
T PF05762_consen 128 GGTDIGQALREFLRQYARPDL--RRTTVVIISDGWDTN 163 (222)
T ss_pred CccHHHHHHHHHHHHhhcccc--cCcEEEEEecccccC
Confidence 999999999999998864322 334599999997653
No 71
>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=4.3e-05 Score=84.39 Aligned_cols=285 Identities=14% Similarity=0.163 Sum_probs=179.1
Q ss_pred CceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEE------------EcCc-ccCH--------
Q 043643 167 PIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRI------------FPLQ-RMTD-------- 224 (634)
Q Consensus 167 p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~------------~pl~-~~t~-------- 224 (634)
|.-++||||+- |.. .++.+|+++...++.|+++..||||+|++.+++. |.-. ..+.
T Consensus 121 ppvf~fVvDtc--~~eeeL~~LkssL~~~l~lLP~~alvGlItfg~~v~v~el~~~~~sk~~VF~G~ke~s~~q~~~~L~ 198 (745)
T KOG1986|consen 121 PPVFVFVVDTC--MDEEELQALKSSLKQSLSLLPENALVGLITFGTMVQVHELGFEECSKSYVFSGNKEYSAKQLLDLLG 198 (745)
T ss_pred CceEEEEEeec--cChHHHHHHHHHHHHHHhhCCCcceEEEEEecceEEEEEcCCCcccceeEEeccccccHHHHHHHhc
Confidence 66689999964 555 9999999999999999999999999999876432 1000 0000
Q ss_pred -----------------------HHHHHHHHHHhcCCC------CC---CCcHHHHHHHHHHHHHhhccCCCCcEEEEEe
Q 043643 225 -----------------------SGRENAIRAINTLSS------NG---GTNIVEGLKKGARVLEERRERSPVASIILLS 272 (634)
Q Consensus 225 -----------------------~~~~~~~~~I~~l~~------~G---gT~i~~aL~~A~~~l~~~~~~~~~~~IILlT 272 (634)
.-...+.+.++.|.+ .| --.++.||..|..+|+.- .++...+|++++
T Consensus 199 ~~~~~~~~~~~~~~~~rFL~P~~~c~~~L~~lle~L~~d~wpV~~g~Rp~RcTG~Al~iA~~Ll~~c-~p~~g~rIv~f~ 277 (745)
T KOG1986|consen 199 LSGGAGKGSENQSASNRFLLPAQECEFKLTNLLEELQPDPWPVPPGHRPLRCTGVALSIASGLLEGC-FPNTGARIVLFA 277 (745)
T ss_pred CCcccccCCcccccchhhhccHHHHHHHHHHHHHHhcCCCCCCCCCCCcccchhHHHHHHHHHhccc-CCCCcceEEEec
Confidence 011234444555543 22 245788888888888654 355667899999
Q ss_pred CCCCCCCCCCC---cccccccCCC--CC-CHHHHHhhchhhhhccccccCCCCeeEEEEEccCC-CChHHHHHHHhhcCC
Q 043643 273 DGQDTHNVLRN---SYTQDEASSI--PS-NELAYLNLLPSSICLSKREAGQPTFPVHTFGFGLE-HDSEAMHAIADASGG 345 (634)
Q Consensus 273 DG~~~~g~~~~---~~~~~~~~~~--~~-~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~-~d~~~L~~iA~~tgG 345 (634)
-|-.+.|.+.. .....-+++. .. +..-++.. .+.+...+++....|..+..|.-+-| ..-..|+.+++.|||
T Consensus 278 gGPcT~GpG~vv~~el~~piRshhdi~~d~a~y~kKa-~KfY~~La~r~~~~ghvlDifa~~lDQvGi~EMk~l~~~TGG 356 (745)
T KOG1986|consen 278 GGPCTRGPGTVVSRELKEPIRSHHDIEKDNAPYYKKA-IKFYEKLAERLANQGHVLDIFAAALDQVGILEMKPLVESTGG 356 (745)
T ss_pred cCCCCcCCceecchhhcCCCcCcccccCcchHHHHHH-HHHHHHHHHHHHhCCceEeeeeeeccccchHHHHHHhhcCCc
Confidence 99888775532 0000000000 00 11111111 11223333344556665555544322 345689999999999
Q ss_pred eEEEcCChhhHHHHHHHHhhcccc-------ceeeeeEEEEEecCCCeEEEEecCCCCC---------cccccCCceeEE
Q 043643 346 TFSFIETLSILQDAFARCIGGLLS-------VVSQDVKLTIRSKSAGVRIGSIPSGRYN---------SEVLDEGQQAVI 409 (634)
Q Consensus 346 ~~~~i~~~~~l~~~f~~~l~~l~s-------~va~~~~l~v~~~~~~v~i~~v~~~~~~---------~~~~~~~~~~~i 409 (634)
...--++++. ++|.+.+..+.. ..+-+..++|.+ +.+++|..+-...+. .+..+.|+...+
T Consensus 357 ~lvl~dsF~~--s~Fk~sfqR~f~~d~~~~l~~~fn~~leV~t-SkdlkI~g~IGp~~Sl~~k~~~vsdt~ig~g~t~~w 433 (745)
T KOG1986|consen 357 VLVLGDSFNT--SIFKQSFQRIFTRDGEGDLKMGFNGTLEVKT-SKDLKIQGVIGPCVSLNKKGPNVSDTEIGEGNTSAW 433 (745)
T ss_pred EEEEecccch--HHHHHHHHHHhccccccchhhhcCceEEEEe-cCCcEEEecccccccccCCCCccccceeccccccce
Confidence 9888887762 334444444443 367788889987 688888877421111 123355677899
Q ss_pred EcCCccCCcEEEEEEEEEcCCCCCCCCCCCCccceEEEEEEEecCCCCceeeee
Q 043643 410 DIGNLYADEEKEFMVYLSIPVSSAEGEQRPECTALLDVFCTHKDSASMEIHQVE 463 (634)
Q Consensus 410 ~lg~l~~~e~r~~lv~l~~p~~~~~~~~~~~~~~l~~v~~~Y~~~~~~~~~~~~ 463 (634)
.++.|...+...|.|++..-...... ....+|.--+|.++.+...++|.
T Consensus 434 km~~ls~~t~~s~~fei~~~~~~~~~-----~~~~iQFiT~Yq~s~g~~riRVt 482 (745)
T KOG1986|consen 434 KMCGLSPSTTLSLFFEISNQHNIPQS-----GQGYIQFITQYQHSSGQKRIRVT 482 (745)
T ss_pred eeeccCCCceEEEEEEeccccCCCCC-----CeeEEEEEEEEEcCCCcEEEEEE
Confidence 99999999999999999743331111 15678888999999888877764
No 72
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.70 E-value=9.4e-09 Score=97.51 Aligned_cols=46 Identities=28% Similarity=0.702 Sum_probs=38.8
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhc---------------CCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQH---------------GNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~---------------~~~~CP~Cr~~~~~ 52 (634)
+|+||++.+.+ ++.+.|||.||..||..|+.. ....||+||..+..
T Consensus 20 ~CpICld~~~d-----PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 20 DCNICLDQVRD-----PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCccCCCcCCC-----cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 69999999977 778899999999999999741 23479999998765
No 73
>KOG3768 consensus DEAD box RNA helicase [General function prediction only]
Probab=98.68 E-value=6.3e-07 Score=96.03 Aligned_cols=201 Identities=20% Similarity=0.252 Sum_probs=124.8
Q ss_pred EEEEEeCCCCCCc-------cHHHHHHHHHHHHHhcC-----CCCeEEEEEeCCCcEEEE-cCcccCHHHHHHHHHHHhc
Q 043643 170 LVTVLDVSGSMSS-------KLPLLKRAVHFIIQNLG-----SADRLSIVIFSSVARRIF-PLQRMTDSGRENAIRAINT 236 (634)
Q Consensus 170 lv~VlD~SgSM~g-------kl~~~K~al~~li~~L~-----~~drvsIV~Fs~~a~~~~-pl~~~t~~~~~~~~~~I~~ 236 (634)
+.|+||+||||.. .|+.+|.|+..|++.-. -+||+-+++|..-.+.+- ... .+-+.+.+.|.+
T Consensus 4 ~lFllDTS~SM~qrah~~~tylD~AKgaVEtFiK~R~r~~~~~gdryml~TfeepP~~vk~~~~----~~~a~~~~eik~ 79 (888)
T KOG3768|consen 4 FLFLLDTSGSMSQRAHPQFTYLDLAKGAVETFIKQRTRVGRETGDRYMLTTFEEPPKNVKVACE----KLGAVVIEEIKK 79 (888)
T ss_pred EEEEEecccchhhhccCCchhhHHHHHHHHHHHHHHhccccccCceEEEEecccCchhhhhHHh----hcccHHHHHHHh
Confidence 6899999999985 79999999999997542 379999999998764432 111 334667888999
Q ss_pred CCCCCCCc-HHHHHHHHHHHHHhhc----------cCC----CCcEEEEEeCCCCC---CCCCCC----cccccccCCCC
Q 043643 237 LSSNGGTN-IVEGLKKGARVLEERR----------ERS----PVASIILLSDGQDT---HNVLRN----SYTQDEASSIP 294 (634)
Q Consensus 237 l~~~GgT~-i~~aL~~A~~~l~~~~----------~~~----~~~~IILlTDG~~~---~g~~~~----~~~~~~~~~~~ 294 (634)
|.+.+++. +..++..|+++|.-.+ ++. -...||+||||.-- .|+... ....-.++..+
T Consensus 80 l~a~~~s~~~~~~~t~AFdlLnlnR~qtGID~yGqGR~pf~lEP~~iI~iTDG~r~s~~~GV~~e~~Lpl~~p~pGse~T 159 (888)
T KOG3768|consen 80 LHAPYGSCQLHHAITEAFDLLNLNRVQTGIDGYGQGRLPFNLEPVTIILITDGGRYSGVAGVPIEFRLPLDPPFPGSEMT 159 (888)
T ss_pred hcCccchhhhhHHHHHHhhhhhhhhhhhcccccccccCccccCceEEEEEecCCccccccCCceeEEeccCCCCCccccc
Confidence 98887655 5566666999985322 111 13469999999432 222211 11122233333
Q ss_pred CCHHHHHhhchhhhhccccccCCCC-eeEEEEEccCCCChHHHHHHHhhcCCeEEEcCChhhHHHHHHHHhhccccceee
Q 043643 295 SNELAYLNLLPSSICLSKREAGQPT-FPVHTFGFGLEHDSEAMHAIADASGGTFSFIETLSILQDAFARCIGGLLSVVSQ 373 (634)
Q Consensus 295 ~~~~~~~~lv~~~i~~~~~~~~~~~-i~I~t~G~G~~~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f~~~l~~l~s~va~ 373 (634)
.+...|.+-+-.-+.+ .-... +.+.-. -+-++|...++.+++.|||+-|.|-++..|. +||..|+..+..
T Consensus 160 kepFRWDQrlftlVlR----iPgt~~~~~~ql-t~Vp~Dds~IermCevTGGRSysV~Spr~ln----qciesLvqkvQ~ 230 (888)
T KOG3768|consen 160 KEPFRWDQRLFTLVLR----IPGTPYPTISQL-TAVPIDDSVIERMCEVTGGRSYSVVSPRQLN----QCIESLVQKVQY 230 (888)
T ss_pred cccchhhhhhheeeEe----cCCCCCccHhhh-cCCCCCchhhHHhhhhcCCceeeeeCHHHHH----HHHHHHHHhhcc
Confidence 3333333221111110 00000 111111 1345788899999999999999999987665 555556666777
Q ss_pred eeEEEEEecC
Q 043643 374 DVKLTIRSKS 383 (634)
Q Consensus 374 ~~~l~v~~~~ 383 (634)
.+.|+++|..
T Consensus 231 gVvv~FE~~~ 240 (888)
T KOG3768|consen 231 GVVVRFECLP 240 (888)
T ss_pred CeEEEeeecC
Confidence 7778888765
No 74
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.65 E-value=1.7e-08 Score=71.55 Aligned_cols=38 Identities=45% Similarity=1.023 Sum_probs=32.7
Q ss_pred ccccccccccCCccee-EecCCCCccchhhHHHHHhcCCCcCccc
Q 043643 3 CPICLGSLRRGQGVAI-FTAECSHSFHFCCIAANVQHGNRICPIC 46 (634)
Q Consensus 3 C~ICl~~~~~~~~~~~-~~~~C~H~Fh~~Ci~~w~~~~~~~CP~C 46 (634)
|+||++.+.+ + +..+|||.||..|+.+|.+. +..||.|
T Consensus 1 C~iC~~~~~~-----~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-----PVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-----EEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccC-----cCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 8999999977 5 67999999999999999988 6799998
No 75
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=98.64 E-value=9.1e-07 Score=85.76 Aligned_cols=178 Identities=17% Similarity=0.185 Sum_probs=101.9
Q ss_pred CCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCcEE--------------EEc-----Cc----
Q 043643 166 APIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLG-SADRLSIVIFSSVARR--------------IFP-----LQ---- 220 (634)
Q Consensus 166 ~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~-~~drvsIV~Fs~~a~~--------------~~p-----l~---- 220 (634)
.-.-|-+|||.||||.| ++..+..++..+.+.|. -+-.+-|+.|.+.+-. -.| +.
T Consensus 11 ~d~~VtlLID~SGSMrgr~~~vA~~~adila~aL~~~gvp~EVlGFtT~aw~gg~~~~~w~~~G~p~~pgrln~l~h~vy 90 (219)
T PF11775_consen 11 RDTVVTLLIDCSGSMRGRPIEVAALCADILARALERCGVPVEVLGFTTRAWKGGRSREAWLAAGRPRYPGRLNDLRHIVY 90 (219)
T ss_pred CCeEEEEEEeCCcCCCCChHHHHHHHHHHHHHHHHhCCCCeEEEeeecCCcCCcchHHHHHhcCCCCCChHHHHHHHHHH
Confidence 44567799999999999 88888766666666664 3667888888876311 001 00
Q ss_pred -ccCHHHHHHHHHHHhcC---CCCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCC
Q 043643 221 -RMTDSGRENAIRAINTL---SSNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSN 296 (634)
Q Consensus 221 -~~t~~~~~~~~~~I~~l---~~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~ 296 (634)
..+.. ...++..+..| ......-=++||..|.+.|..+.... +.+|++|||.|....+.. ..+
T Consensus 91 k~a~~~-wrraR~~l~~m~~~~~~~eniDGeAl~~a~~rL~~r~e~r--kiLiViSDG~P~d~st~~----------~n~ 157 (219)
T PF11775_consen 91 KDADTP-WRRARRNLGLMMREGLLKENIDGEALRWAAERLLARPEQR--KILIVISDGAPADDSTLS----------AND 157 (219)
T ss_pred HhcCCh-hhhHHHhHHHHhhccccccCCcHHHHHHHHHHHHcCCccc--eEEEEEeCCCcCcccccc----------cCC
Confidence 00000 00111111111 11112223689999999998776544 459999999998432211 011
Q ss_pred HHHHHhhchhhhhccccccCCCCeeEEEEEccCCCChHHHHHHHhhcCCeEEEcCChhhHHHHHHHHhhccc
Q 043643 297 ELAYLNLLPSSICLSKREAGQPTFPVHTFGFGLEHDSEAMHAIADASGGTFSFIETLSILQDAFARCIGGLL 368 (634)
Q Consensus 297 ~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f~~~l~~l~ 368 (634)
..-+...+...++. -....+|.+.+||+|.|... -.-++..|.+.++|..++-..+..++
T Consensus 158 ~~~L~~HLr~vi~~---ie~~~~Vel~aiGIg~D~~~---------yY~~~~~i~~~e~l~~~~~~~l~~l~ 217 (219)
T PF11775_consen 158 GDYLDAHLRQVIAE---IETRSDVELIAIGIGHDVSR---------YYRRAVTIDDVEELGGALFEQLARLF 217 (219)
T ss_pred hHHHHHHHHHHHHH---HhccCCcEEEEEEcCCCchh---------hcccceecCCHHHHHHHHHHHHHHHh
Confidence 11222222222222 11246789999999876321 12235678899999888887777664
No 76
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.57 E-value=4.7e-08 Score=71.01 Aligned_cols=45 Identities=36% Similarity=0.901 Sum_probs=36.5
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEW 50 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~ 50 (634)
+|+||++.+.. .....+|+|.||..|+..|...+...||.|+..+
T Consensus 1 ~C~iC~~~~~~----~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFRE----PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhC----ceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 59999999833 2444569999999999999987566899998753
No 77
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=3.1e-08 Score=95.54 Aligned_cols=46 Identities=28% Similarity=0.686 Sum_probs=39.6
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhc--CCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQH--GNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~--~~~~CP~Cr~~~~~ 52 (634)
+|.|||+.-++ |+...|||-||..||.+|+.. ....||+|+.....
T Consensus 49 dCNICLd~akd-----PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 49 DCNICLDLAKD-----PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred eeeeeccccCC-----CEEeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 59999999988 888899999999999999963 34469999998754
No 78
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.55 E-value=5.1e-08 Score=69.89 Aligned_cols=39 Identities=36% Similarity=0.888 Sum_probs=34.7
Q ss_pred ccccccccccCCcceeE-ecCCCCccchhhHHHHHh-cCCCcCccc
Q 043643 3 CPICLGSLRRGQGVAIF-TAECSHSFHFCCIAANVQ-HGNRICPIC 46 (634)
Q Consensus 3 C~ICl~~~~~~~~~~~~-~~~C~H~Fh~~Ci~~w~~-~~~~~CP~C 46 (634)
|+||++.+.. +. .++|||.||..|+..|++ .+...||+|
T Consensus 1 C~iC~~~~~~-----~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED-----PVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS-----EEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccC-----CCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999999977 55 899999999999999998 566789998
No 79
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=9.9e-09 Score=80.53 Aligned_cols=52 Identities=31% Similarity=0.723 Sum_probs=42.0
Q ss_pred CCccccccccc--------cCCcceeEecCCCCccchhhHHHHHhc--CCCcCccccccccc
Q 043643 1 KTCPICLGSLR--------RGQGVAIFTAECSHSFHFCCIAANVQH--GNRICPICRCEWKD 52 (634)
Q Consensus 1 ~~C~ICl~~~~--------~~~~~~~~~~~C~H~Fh~~Ci~~w~~~--~~~~CP~Cr~~~~~ 52 (634)
++|.||.-.|. +|+.++.+...|.|.||.+||.+|+.. ....||+||..|..
T Consensus 21 e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 21 ETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred CccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 36999998885 456777778889999999999999963 23469999999863
No 80
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.52 E-value=6.4e-08 Score=72.64 Aligned_cols=46 Identities=30% Similarity=0.749 Sum_probs=38.3
Q ss_pred CCccccccccccCCcceeEecCCCCc-cchhhHHHHHhcCCCcCccccccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHS-FHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
..|.||++.... ++..+|||. ||..|+..|.+. ...||+||+++..
T Consensus 3 ~~C~iC~~~~~~-----~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 3 EECPICFENPRD-----VVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIES 49 (50)
T ss_dssp SB-TTTSSSBSS-----EEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-SE
T ss_pred CCCccCCccCCc-----eEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhcC
Confidence 469999999877 778899999 999999999984 6689999998653
No 81
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.52 E-value=1.8e-06 Score=89.43 Aligned_cols=168 Identities=20% Similarity=0.281 Sum_probs=114.1
Q ss_pred CCCCCceEEEEEeCCCCCCc--cHHHHHH---HHHHHHHhcCCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcC
Q 043643 163 ADRAPIDLVTVLDVSGSMSS--KLPLLKR---AVHFIIQNLGSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTL 237 (634)
Q Consensus 163 ~~r~p~dlv~VlD~SgSM~g--kl~~~K~---al~~li~~L~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l 237 (634)
..+.-.-+++++|+|-||.- ++--+|+ |+..+|..--++|-+.||+|...++.+- ...+..+
T Consensus 459 E~rt~aAvallvDtS~SM~~eGRw~PmKQtALALhHLv~TrfrGD~l~~i~Fgr~A~~v~-------------v~eLt~l 525 (652)
T COG4867 459 ETRTQAAVALLVDTSFSMVMEGRWLPMKQTALALHHLVCTRFRGDALQIIAFGRYARTVT-------------AAELTGL 525 (652)
T ss_pred hhhcccceeeeeeccHHHHHhccCCchHHHHHHHHHHHHhcCCCcceEEEeccchhcccC-------------HHHHhcC
Confidence 44555668999999999985 6666665 6677777777899999999999987542 1234445
Q ss_pred CCC--CCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCC-------cccccccCCCCCCHHHHHhhchhhh
Q 043643 238 SSN--GGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRN-------SYTQDEASSIPSNELAYLNLLPSSI 308 (634)
Q Consensus 238 ~~~--GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~-------~~~~~~~~~~~~~~~~~~~lv~~~i 308 (634)
.+- -|||+..||..|-+.|+... ...+.|+++|||.|+.-.-.. .|.. +...+-..+. .+
T Consensus 526 ~~v~eqgTNlhhaL~LA~r~l~Rh~--~~~~~il~vTDGePtAhle~~DG~~~~f~yp~--------DP~t~~~Tvr-~~ 594 (652)
T COG4867 526 AGVYEQGTNLHHALALAGRHLRRHA--GAQPVVLVVTDGEPTAHLEDGDGTSVFFDYPP--------DPRTIAHTVR-GF 594 (652)
T ss_pred CCccccccchHHHHHHHHHHHHhCc--ccCceEEEEeCCCccccccCCCCceEecCCCC--------ChhHHHHHHH-HH
Confidence 433 49999999999999997654 344569999999998532210 1111 1122222221 11
Q ss_pred hccccccCCCCeeEEEEEccCCCC-hHHHHHHHhhcCCeEEEcCChhhHHHH
Q 043643 309 CLSKREAGQPTFPVHTFGFGLEHD-SEAMHAIADASGGTFSFIETLSILQDA 359 (634)
Q Consensus 309 ~~~~~~~~~~~i~I~t~G~G~~~d-~~~L~~iA~~tgG~~~~i~~~~~l~~~ 359 (634)
. +....|+.|.+|-+|.|.. ..++..+|+..+|+.++ ++.+.|..+
T Consensus 595 d----~~~r~G~q~t~FrLg~DpgL~~Fv~qva~rv~G~vv~-pdldglGaa 641 (652)
T COG4867 595 D----DMARLGAQVTIFRLGSDPGLARFIDQVARRVQGRVVV-PDLDGLGAA 641 (652)
T ss_pred H----HHHhccceeeEEeecCCHhHHHHHHHHHHHhCCeEEe-cCcchhhHH
Confidence 1 2356899999999997653 34899999999999764 455555544
No 82
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.6e-07 Score=95.44 Aligned_cols=48 Identities=27% Similarity=0.750 Sum_probs=39.1
Q ss_pred CCcccccccc-ccC-------CcceeEecCCCCccchhhHHHHHhcCCCcCcccccc
Q 043643 1 KTCPICLGSL-RRG-------QGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCE 49 (634)
Q Consensus 1 ~~C~ICl~~~-~~~-------~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~ 49 (634)
+.|.||++.+ ..+ ....|..++|||.||.+|+..|..+ ..+||+||.+
T Consensus 288 ~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p 343 (491)
T COG5243 288 RTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRP 343 (491)
T ss_pred CeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCc
Confidence 3699999994 332 2335677999999999999999987 6699999988
No 83
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=98.44 E-value=2e-05 Score=76.30 Aligned_cols=172 Identities=18% Similarity=0.170 Sum_probs=108.1
Q ss_pred CceEEEEEeCCCCCCc-cHH----HHHHHH--HHHHHhcCC----CCeEEEEEeCC--CcEEEEcCcccCH-HHHHHHHH
Q 043643 167 PIDLVTVLDVSGSMSS-KLP----LLKRAV--HFIIQNLGS----ADRLSIVIFSS--VARRIFPLQRMTD-SGRENAIR 232 (634)
Q Consensus 167 p~dlv~VlD~SgSM~g-kl~----~~K~al--~~li~~L~~----~drvsIV~Fs~--~a~~~~pl~~~t~-~~~~~~~~ 232 (634)
-+.||+.+|+||||.. .+. -+-.|+ -.+++.+.. .-.|+++.|++ ....++|++.+.. .+.+.+-.
T Consensus 3 dlaLvLavDvS~SVD~~E~~lQ~~G~A~Al~dp~V~~Ai~~g~~g~Iav~~~eWsg~~~q~~~v~Wt~i~~~~da~a~A~ 82 (205)
T PF06707_consen 3 DLALVLAVDVSGSVDADEYRLQREGYAAALRDPEVIAAILSGPIGRIAVAVVEWSGPGRQRVVVPWTRIDSPADAEAFAA 82 (205)
T ss_pred cceeeeeeeccCCCCHHHHHHHHHHHHHHHCCHHHHHHHhcCCCCeEEEEEEEecCCCCceEEeCCEEeCCHHHHHHHHH
Confidence 3679999999999997 333 233333 334444432 34678888887 5788889998864 44456666
Q ss_pred HHhcC--CCCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhc
Q 043643 233 AINTL--SSNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICL 310 (634)
Q Consensus 233 ~I~~l--~~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~ 310 (634)
.|... ...++|.|+.||..|..+|.+.......+.|=+-.||.+|.|... .......
T Consensus 83 ~l~~~~r~~~~~Taig~Al~~a~~ll~~~~~~~~RrVIDvSGDG~~N~G~~p--------------~~~ard~------- 141 (205)
T PF06707_consen 83 RLRAAPRRFGGRTAIGSALDFAAALLAQNPFECWRRVIDVSGDGPNNQGPRP--------------VTSARDA------- 141 (205)
T ss_pred HHHhCCCCCCCCchHHHHHHHHHHHHHhCCCCCceEEEEECCCCCCCCCCCc--------------cHHHHHH-------
Confidence 66665 344679999999999999988766566666788899999987432 1112111
Q ss_pred cccccCCCCeeEEEEEccCCCCh--HHHHH-HH---hhcCCeE-EEcCChhhHHHHHHHH
Q 043643 311 SKREAGQPTFPVHTFGFGLEHDS--EAMHA-IA---DASGGTF-SFIETLSILQDAFARC 363 (634)
Q Consensus 311 ~~~~~~~~~i~I~t~G~G~~~d~--~~L~~-iA---~~tgG~~-~~i~~~~~l~~~f~~~ 363 (634)
+...+|+|+.+-++..... ..|.. -. -.+.|.| ..+.+.++..+++.+.
T Consensus 142 ----~~~~GitINgL~I~~~~~~~~~~L~~yy~~~VIgGpgAFV~~a~~~~df~~AirrK 197 (205)
T PF06707_consen 142 ----AVAAGITINGLAILDDDPFGGADLDAYYRRCVIGGPGAFVETARGFEDFAEAIRRK 197 (205)
T ss_pred ----HHHCCeEEeeeEecCCCCCccccHHHHHhhhcccCCCceEEEcCCHHHHHHHHHHH
Confidence 1246999999998764321 11221 11 1233434 3455666665555443
No 84
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.40 E-value=2.2e-07 Score=73.29 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=39.4
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWK 51 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~ 51 (634)
.|+||.+.+.. |+..+|||.||..||..|++. ...||+|+..+.
T Consensus 3 ~Cpi~~~~~~~-----Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVMKD-----PVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcCCC-----CEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCC
Confidence 59999999988 888999999999999999976 568999998764
No 85
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=98.40 E-value=7e-07 Score=95.32 Aligned_cols=178 Identities=21% Similarity=0.213 Sum_probs=116.5
Q ss_pred ceEEEEEeCCCCCCccHHHHHHHHHHHHHhc-------C-CCCeEEEEEeCCCcEEEEc---CcccCHHHHHHHHHHHhc
Q 043643 168 IDLVTVLDVSGSMSSKLPLLKRAVHFIIQNL-------G-SADRLSIVIFSSVARRIFP---LQRMTDSGRENAIRAINT 236 (634)
Q Consensus 168 ~dlv~VlD~SgSM~gkl~~~K~al~~li~~L-------~-~~drvsIV~Fs~~a~~~~p---l~~~t~~~~~~~~~~I~~ 236 (634)
.-+.+++|+|-||..+++..|+.+..+.+.| . -+|...+.+|.+..+.+.- +......-.......|..
T Consensus 447 la~TLLvD~S~St~a~mdetrRvidl~~eaL~~la~~~qa~gd~~~~~~fts~rr~~vri~tvk~FDes~~~~~~~RImA 526 (637)
T COG4548 447 LAFTLLVDVSASTDAKMDETRRVIDLFHEALLVLAHGHQALGDSEDILDFTSRRRPWVRINTVKDFDESMGETVGPRIMA 526 (637)
T ss_pred ceeEEEeecccchHHHhhhhhhhHHHHHHHHHHhhchhhhhCCHHHhcCchhhcCcceeeeeeeccccccccccchhhee
Confidence 3455789999999876555554443333332 2 3788889999987655322 222222334566778889
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccC
Q 043643 237 LSSNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAG 316 (634)
Q Consensus 237 l~~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~ 316 (634)
|.|+-.|.++.||+.|.+.|..+. ++.+.+||||||.||.-.. |. |.....+-.+.+. ++.
T Consensus 527 LePg~ytR~G~AIR~As~kL~~rp--q~qklLivlSDGkPnd~d~---YE------gr~gIeDTr~AV~--------eaR 587 (637)
T COG4548 527 LEPGYYTRDGAAIRHASAKLMERP--QRQKLLIVLSDGKPNDFDH---YE------GRFGIEDTREAVI--------EAR 587 (637)
T ss_pred cCccccccccHHHHHHHHHHhcCc--ccceEEEEecCCCcccccc---cc------cccchhhHHHHHH--------HHH
Confidence 999999999999999999997664 5567799999999985321 10 0001112222221 346
Q ss_pred CCCeeEEEEEccCCCChHHHHHH-HhhcCCeEEEcCChhhHHHHHHHHhhccc
Q 043643 317 QPTFPVHTFGFGLEHDSEAMHAI-ADASGGTFSFIETLSILQDAFARCIGGLL 368 (634)
Q Consensus 317 ~~~i~I~t~G~G~~~d~~~L~~i-A~~tgG~~~~i~~~~~l~~~f~~~l~~l~ 368 (634)
+.||.|+.|-+..+ ....+ +..+.+-|.+|++...|..++-.+..+|+
T Consensus 588 k~Gi~VF~Vtld~e----a~~y~p~~fgqngYa~V~~v~~LP~~L~~lyrkL~ 636 (637)
T COG4548 588 KSGIEVFNVTLDRE----AISYLPALFGQNGYAFVERVAQLPGALPPLYRKLL 636 (637)
T ss_pred hcCceEEEEEecch----hhhhhHHHhccCceEEccchhhcchhHHHHHHHhc
Confidence 78999988877653 22222 23345668999999999999888877654
No 86
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=98.37 E-value=2.4e-06 Score=77.28 Aligned_cols=92 Identities=20% Similarity=0.330 Sum_probs=65.9
Q ss_pred EEEEEeCCCCCCc-cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHh--cCCCCCCCcHH
Q 043643 170 LVTVLDVSGSMSS-KLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAIN--TLSSNGGTNIV 246 (634)
Q Consensus 170 lv~VlD~SgSM~g-kl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~--~l~~~GgT~i~ 246 (634)
|+++||+||||.. -|...-..+..+.+.. ..++-|+.|+..++....+.. ....+. .+..+|||++.
T Consensus 1 i~vaiDtSGSis~~~l~~fl~ev~~i~~~~--~~~v~vi~~D~~v~~~~~~~~--------~~~~~~~~~~~GgGGTdf~ 70 (126)
T PF09967_consen 1 IVVAIDTSGSISDEELRRFLSEVAGILRRF--PAEVHVIQFDAEVQDVQVFRS--------LEDELRDIKLKGGGGTDFR 70 (126)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHhC--CCCEEEEEECCEeeeeeEEec--------ccccccccccCCCCCCcch
Confidence 5899999999988 6655555556666665 567999999999988877662 111121 35678999999
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEeCCCCC
Q 043643 247 EGLKKGARVLEERRERSPVASIILLSDGQDT 277 (634)
Q Consensus 247 ~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~ 277 (634)
.++..+.+. . .....+|+||||...
T Consensus 71 pvf~~~~~~----~--~~~~~vi~fTDg~~~ 95 (126)
T PF09967_consen 71 PVFEYLEEN----R--PRPSVVIYFTDGEGW 95 (126)
T ss_pred HHHHHHHhc----C--CCCCEEEEEeCCCCC
Confidence 999987543 1 223458899999864
No 87
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.36 E-value=2.9e-07 Score=67.07 Aligned_cols=44 Identities=27% Similarity=0.548 Sum_probs=36.5
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRC 48 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~ 48 (634)
.|+||++.+.. ...++.++|||.||..|+..+. .....||+||+
T Consensus 1 ~C~~C~~~~~~--~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSE--ERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccC--CCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 59999999933 4558889999999999999988 44568999984
No 88
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=98.36 E-value=4.6e-06 Score=83.79 Aligned_cols=165 Identities=16% Similarity=0.216 Sum_probs=115.9
Q ss_pred CceEEEEEeCCCCCCc------cHHHHHHHHHHHHHhcC---CCCeEEEEEeCCC-cEEEEcCcccCHHHHHHHHHHHhc
Q 043643 167 PIDLVTVLDVSGSMSS------KLPLLKRAVHFIIQNLG---SADRLSIVIFSSV-ARRIFPLQRMTDSGRENAIRAINT 236 (634)
Q Consensus 167 p~dlv~VlD~SgSM~g------kl~~~K~al~~li~~L~---~~drvsIV~Fs~~-a~~~~pl~~~t~~~~~~~~~~I~~ 236 (634)
=..+++|||.|.+|.. ++..+-+.+..|+..+- |-.++|||+--+. +.++..++ .|-+.-+.++.+
T Consensus 60 iRhl~iviD~S~am~e~Df~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~~lt~lt----gnp~~hI~aL~~ 135 (378)
T KOG2807|consen 60 IRHLYIVIDCSRAMEEKDFRPSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKADRLTDLT----GNPRIHIHALKG 135 (378)
T ss_pred heeEEEEEEhhhhhhhccCCchHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhhHHHHhc----CCHHHHHHHHhc
Confidence 3679999999999986 78887777777776653 5568898887654 55555555 455666777777
Q ss_pred CC-CCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhcccccc
Q 043643 237 LS-SNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREA 315 (634)
Q Consensus 237 l~-~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~ 315 (634)
+. +.|.-.+..||..|.+.|+....-...-.+|+++ ...+.. ..++.+.+. ..
T Consensus 136 ~~~~~g~fSLqNaLe~a~~~Lk~~p~H~sREVLii~s-slsT~D-----------------Pgdi~~tI~--------~l 189 (378)
T KOG2807|consen 136 LTECSGDFSLQNALELAREVLKHMPGHVSREVLIIFS-SLSTCD-----------------PGDIYETID--------KL 189 (378)
T ss_pred ccccCCChHHHHHHHHHHHHhcCCCcccceEEEEEEe-eecccC-----------------cccHHHHHH--------HH
Confidence 76 7788899999999999997654322222344443 222221 123444443 12
Q ss_pred CCCCeeEEEEEccCCCChHHHHHHHhhcCCeEEEcCChhhHHHHHHHH
Q 043643 316 GQPTFPVHTFGFGLEHDSEAMHAIADASGGTFSFIETLSILQDAFARC 363 (634)
Q Consensus 316 ~~~~i~I~t~G~G~~~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f~~~ 363 (634)
+..+|+|+.||+.. ....-+.|+.+|+|.|+.+-|..-+.+.|...
T Consensus 190 k~~kIRvsvIgLsa--Ev~icK~l~kaT~G~Y~V~lDe~HlkeLl~e~ 235 (378)
T KOG2807|consen 190 KAYKIRVSVIGLSA--EVFICKELCKATGGRYSVALDEGHLKELLLEH 235 (378)
T ss_pred HhhCeEEEEEeech--hHHHHHHHHHhhCCeEEEEeCHHHHHHHHHhc
Confidence 45789999999975 34688999999999999999998887777653
No 89
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.35 E-value=3.1e-07 Score=64.28 Aligned_cols=39 Identities=44% Similarity=1.032 Sum_probs=33.5
Q ss_pred ccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccc
Q 043643 3 CPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPIC 46 (634)
Q Consensus 3 C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~C 46 (634)
|+||++.... ++.++|+|.||..|+..|.+.+...||.|
T Consensus 1 C~iC~~~~~~-----~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKD-----PVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCC-----cEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 8999998554 77789999999999999998556679988
No 90
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.33 E-value=3e-07 Score=97.67 Aligned_cols=46 Identities=30% Similarity=0.680 Sum_probs=40.1
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDV 53 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 53 (634)
.|+||++.|.. ++.++|||.||..||..|+.. ...||+|+..+...
T Consensus 28 ~C~IC~d~~~~-----PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 28 RCHICKDFFDV-----PVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQES 73 (397)
T ss_pred CCCcCchhhhC-----ccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccc
Confidence 69999999987 788999999999999999976 44799999987654
No 91
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.30 E-value=1.7e-05 Score=87.34 Aligned_cols=181 Identities=17% Similarity=0.179 Sum_probs=103.1
Q ss_pred CCCCCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCcEEE--------------EcCcccCH--
Q 043643 163 ADRAPIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLG-SADRLSIVIFSSVARRI--------------FPLQRMTD-- 224 (634)
Q Consensus 163 ~~r~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~-~~drvsIV~Fs~~a~~~--------------~pl~~~t~-- 224 (634)
......-|.++||.||||.+ ++..++..+-.+.+.|. -+-.+-|+.|.+.+..- .| .+++.
T Consensus 388 ~~~~D~~V~LLID~SGSM~~r~~~vA~~~a~iLa~aL~~~gIp~eVlGFtt~aw~gg~~re~w~~~g~p~~P-gRlN~l~ 466 (600)
T TIGR01651 388 TEFRDTVVTLLIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTRAWKGGQSREKWLKAGKPAAP-GRLNDLR 466 (600)
T ss_pred CCCCCcEEEEEEECCccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEeecccccccccchHHHHhcCCCCCC-cccchhh
Confidence 44556778899999999999 66666655555555554 36778899998864100 01 00000
Q ss_pred --------HHHHHHHHHHhcCC---CCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCC
Q 043643 225 --------SGRENAIRAINTLS---SNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSI 293 (634)
Q Consensus 225 --------~~~~~~~~~I~~l~---~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~ 293 (634)
.........+..+- .....-=+.||..|.+.|..+.... +.+|+||||.|....+.. .+ ++
T Consensus 467 hiiyk~ad~~wr~~r~~l~~mm~~~~~~eN~DGeAl~wa~~rL~~R~e~r--KiL~ViSDG~P~D~~Tls---vN---~~ 538 (600)
T TIGR01651 467 HIIYKSADAPWRRARRNLGLMMREGLLKENIDGEALMWAHQRLIARPEQR--RILMMISDGAPVDDSTLS---VN---PG 538 (600)
T ss_pred hhhhhccccchhhhccchhhhhhccccccCCchHHHHHHHHHHhcCcccc--eEEEEEeCCCcCCccccc---cC---ch
Confidence 00000011111110 0111112789999999998876554 459999999998533210 00 00
Q ss_pred CCCHHHHHhhchhhhhccccccCCCCeeEEEEEccCCCChHHHHHHHhhcCCeEEEcCChhhHHHHHHHHhhccc
Q 043643 294 PSNELAYLNLLPSSICLSKREAGQPTFPVHTFGFGLEHDSEAMHAIADASGGTFSFIETLSILQDAFARCIGGLL 368 (634)
Q Consensus 294 ~~~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f~~~l~~l~ 368 (634)
..-...++.++. .+. ...+|.+.+||||.| +... -..+..|.+.++|..++.+-+..|+
T Consensus 539 ~~l~~hLr~vi~-~~e------~~~~vel~aigIg~D--------v~r~-Y~~~v~i~~~~eL~~~~~~qLa~Lf 597 (600)
T TIGR01651 539 NYLERHLRAVIE-EIE------TRSPVELLAIGIGHD--------VTRY-YRRAVTIVDAEELAGAMTEQLAALF 597 (600)
T ss_pred hHHHHHHHHHHH-HHh------ccCCceEEEeecccc--------HHHH-ccccceecCHHHHHHHHHHHHHHHh
Confidence 011223333332 121 245899999999976 2222 2455688999999888887777665
No 92
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.27 E-value=2.6e-07 Score=92.78 Aligned_cols=49 Identities=24% Similarity=0.575 Sum_probs=42.5
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCCCC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQ 56 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~~ 56 (634)
+|.||++.|.. |+..+|+|.||.-||..++.. ...||.|+.++.+..+.
T Consensus 25 RC~IC~eyf~i-----p~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr 73 (442)
T KOG0287|consen 25 RCGICFEYFNI-----PMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLR 73 (442)
T ss_pred HHhHHHHHhcC-----ceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhh
Confidence 59999999988 888899999999999999976 56899999998775443
No 93
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.27 E-value=4.7e-07 Score=65.13 Aligned_cols=40 Identities=25% Similarity=0.600 Sum_probs=23.5
Q ss_pred ccccccccccCCcceeEecCCCCccchhhHHHHHhcC---CCcCc
Q 043643 3 CPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHG---NRICP 44 (634)
Q Consensus 3 C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~---~~~CP 44 (634)
||||.+ |.. +...|+.++|||.||..|+.++.+.+ ...||
T Consensus 1 CpIc~e-~~~-~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FST-EENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----T-TSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccC-CCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 644 46668888999999999999988743 44677
No 94
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=98.26 E-value=0.00024 Score=75.77 Aligned_cols=247 Identities=17% Similarity=0.152 Sum_probs=133.0
Q ss_pred CCCCCceEEEEEeCCCCCCccHHHHHHHHHHHHH---hcCCCCeEEEEEeCCCc--------------------------
Q 043643 163 ADRAPIDLVTVLDVSGSMSSKLPLLKRAVHFIIQ---NLGSADRLSIVIFSSVA-------------------------- 213 (634)
Q Consensus 163 ~~r~p~dlv~VlD~SgSM~gkl~~~K~al~~li~---~L~~~drvsIV~Fs~~a-------------------------- 213 (634)
...-|+||++++|.|+||...++.+|.....+.. .+..+-|+|+-+|-++.
T Consensus 95 a~~yPvDLYyLMDlS~SM~ddl~~lk~lg~~L~~~m~~it~n~rlGfGsFVDK~v~P~~~t~p~~l~~PC~~~~~~c~p~ 174 (423)
T smart00187 95 AEDYPVDLYYLMDLSYSMKDDLDNLKSLGDDLAREMKGLTSNFRLGFGSFVDKTVSPFVSTRPEKLENPCPNYNLTCEPP 174 (423)
T ss_pred cccCccceEEEEeCCccHHHHHHHHHHHHHHHHHHHHhcccCceeeEEEeecCccCCcccCCHHHhcCCCcCCCCCcCCC
Confidence 3667999999999999999977777776655555 45578899998887752
Q ss_pred ---EEEEcCcccCHHHHHHHHHHHhcCCCCCCCcHHH-HHHHHHHHH---HhhccC-CCCcEEEEEeCCCCCCCCCCC--
Q 043643 214 ---RRIFPLQRMTDSGRENAIRAINTLSSNGGTNIVE-GLKKGARVL---EERRER-SPVASIILLSDGQDTHNVLRN-- 283 (634)
Q Consensus 214 ---~~~~pl~~~t~~~~~~~~~~I~~l~~~GgT~i~~-aL~~A~~~l---~~~~~~-~~~~~IILlTDG~~~~g~~~~-- 283 (634)
+.+++|+ .+...+.+.|+.....|+-+.-+ ||..-++++ +.-.++ +..+.+|+.||+.-.......
T Consensus 175 f~f~~~L~LT----~~~~~F~~~V~~~~iSgN~D~PEgG~DAimQaaVC~~~IGWR~~a~rllv~~TDa~fH~AGDGkLa 250 (423)
T smart00187 175 YGFKHVLSLT----DDTDEFNEEVKKQRISGNLDAPEGGFDAIMQAAVCTEQIGWREDARRLLVFSTDAGFHFAGDGKLA 250 (423)
T ss_pred cceeeeccCC----CCHHHHHHHHhhceeecCCcCCcccHHHHHHHHhhccccccCCCceEEEEEEcCCCccccCCccee
Confidence 1234555 46778888999887777655332 233222332 223333 455678899998765322111
Q ss_pred --------ccccccc-CCCCCCHHHHHhhchhhhhccccccCCCCe-eEEEEEccCCCChHHHHHHHhhcCCeEEEc--C
Q 043643 284 --------SYTQDEA-SSIPSNELAYLNLLPSSICLSKREAGQPTF-PVHTFGFGLEHDSEAMHAIADASGGTFSFI--E 351 (634)
Q Consensus 284 --------~~~~~~~-~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i-~I~t~G~G~~~d~~~L~~iA~~tgG~~~~i--~ 351 (634)
.+..+.. .+......+|-+ +....+...+.+| +|+++ -.. -....+.+++.-.|...-+ .
T Consensus 251 GIv~PNDg~CHL~~~g~Yt~s~~~DYPS-----i~ql~~kL~e~nI~~IFAV--T~~-~~~~Y~~Ls~lipgs~vg~Ls~ 322 (423)
T smart00187 251 GIVQPNDGQCHLDNNGEYTMSTTQDYPS-----IGQLNQKLAENNINPIFAV--TKK-QVSLYKELSALIPGSSVGVLSE 322 (423)
T ss_pred eEecCCCCcceeCCCCCcCccCcCCCCC-----HHHHHHHHHhcCceEEEEE--ccc-chhHHHHHHHhcCcceeeeccc
Confidence 1111110 011011112211 1111112223444 56554 322 2346677776655655432 5
Q ss_pred ChhhHHHHHHHHhhccccceeeeeEEEEEecCCCeEEEEecCCCCCcccccCCceeEEEcCCccCCcEEEEEEEEEcCC
Q 043643 352 TLSILQDAFARCIGGLLSVVSQDVKLTIRSKSAGVRIGSIPSGRYNSEVLDEGQQAVIDIGNLYADEEKEFMVYLSIPV 430 (634)
Q Consensus 352 ~~~~l~~~f~~~l~~l~s~va~~~~l~v~~~~~~v~i~~v~~~~~~~~~~~~~~~~~i~lg~l~~~e~r~~lv~l~~p~ 430 (634)
|.++|-+.+.+....+ ...++|...-.+.++.|.-.....-..... +. -.=.+|.-|++..|-|++.+..
T Consensus 323 DSsNIv~LI~~aY~~i----~S~V~l~~~~~p~~v~~~y~s~C~~g~~~~--~~---~~C~~v~iG~~V~F~v~vta~~ 392 (423)
T smart00187 323 DSSNVVELIKDAYNKI----SSRVELEDNSLPEGVSVTYTSSCPGGVVGP--GT---RKCEGVKIGDTVSFEVTVTATK 392 (423)
T ss_pred CcchHHHHHHHHHHhh----ceEEEEecCCCCCcEEEEEEeeCCCCCccc--CC---cccCCcccCCEEEEEEEEEeCc
Confidence 5566655555544444 445555554335677665331110000000 00 0123678888999999998644
No 95
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=4.8e-05 Score=72.58 Aligned_cols=135 Identities=16% Similarity=0.321 Sum_probs=106.6
Q ss_pred eEEEEEeCCCCCCc------cHHHHHHHHHHHHHh-c--CCCCeEEEEEeCC-CcEEEEcCcccCHHHHHHHHHHHhcCC
Q 043643 169 DLVTVLDVSGSMSS------KLPLLKRAVHFIIQN-L--GSADRLSIVIFSS-VARRIFPLQRMTDSGRENAIRAINTLS 238 (634)
Q Consensus 169 dlv~VlD~SgSM~g------kl~~~K~al~~li~~-L--~~~drvsIV~Fs~-~a~~~~pl~~~t~~~~~~~~~~I~~l~ 238 (634)
..+++||.|--|.. |+..-|+++..++.. + .|...+||++..+ .++++.-+| .++-.++..+..+.
T Consensus 5 atmi~iDNse~mrNgDy~PtRf~aQ~daVn~v~~~K~~snpEntvGiitla~a~~~vLsT~T----~d~gkils~lh~i~ 80 (259)
T KOG2884|consen 5 ATMICIDNSEYMRNGDYLPTRFQAQKDAVNLVCQAKLRSNPENTVGIITLANASVQVLSTLT----SDRGKILSKLHGIQ 80 (259)
T ss_pred eEEEEEeChHHhhcCCCChHHHHHHHHHHHHHHHhhhcCCcccceeeEeccCCCceeeeecc----ccchHHHHHhcCCC
Confidence 36899999988874 899999999988864 3 3678999999998 788888887 55778999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCC
Q 043643 239 SNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQP 318 (634)
Q Consensus 239 ~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~ 318 (634)
+.|+-++..||+.|.-.|+.|..++...+||++--..-. .++.++..+.. ..++.
T Consensus 81 ~~g~~~~~~~i~iA~lalkhRqnk~~~~riVvFvGSpi~-----------------e~ekeLv~~ak--------rlkk~ 135 (259)
T KOG2884|consen 81 PHGKANFMTGIQIAQLALKHRQNKNQKQRIVVFVGSPIE-----------------ESEKELVKLAK--------RLKKN 135 (259)
T ss_pred cCCcccHHHHHHHHHHHHHhhcCCCcceEEEEEecCcch-----------------hhHHHHHHHHH--------HHHhc
Confidence 999999999999999999999988877888887643322 12334433322 34678
Q ss_pred CeeEEEEEccCCCC
Q 043643 319 TFPVHTFGFGLEHD 332 (634)
Q Consensus 319 ~i~I~t~G~G~~~d 332 (634)
+|.|..|-||...+
T Consensus 136 ~Vaidii~FGE~~~ 149 (259)
T KOG2884|consen 136 KVAIDIINFGEAEN 149 (259)
T ss_pred CeeEEEEEeccccc
Confidence 99999999997544
No 96
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.23 E-value=3.8e-07 Score=89.78 Aligned_cols=49 Identities=24% Similarity=0.607 Sum_probs=42.5
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCCCC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQ 56 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~~ 56 (634)
.|-||.+.|.. ++..+|||.||.-||..++.. ...||+||.+..+.-..
T Consensus 27 rC~IC~~~i~i-----p~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr 75 (391)
T COG5432 27 RCRICDCRISI-----PCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLR 75 (391)
T ss_pred Hhhhhhheeec-----ceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcc
Confidence 69999999988 888999999999999999876 55899999987765544
No 97
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.5e-07 Score=95.66 Aligned_cols=65 Identities=34% Similarity=0.622 Sum_probs=51.2
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCCCCCCCCCCCcccCcccccccCCCC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQAPGSVIDARRNNMARARVSPFN 78 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 78 (634)
.|+|||+.++. ...+..|.|.||+.||...++.++..||.||+.+...-.++. .|..|+.++.+.
T Consensus 45 ~c~icl~llk~----tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~--------Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 45 ICPICLSLLKK----TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRI--------DPNFDALISKIY 109 (381)
T ss_pred ccHHHHHHHHh----hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCC--------CccHHHHHHHHh
Confidence 49999999976 256688999999999988888888899999998766555543 567777665543
No 98
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.1e-06 Score=93.93 Aligned_cols=46 Identities=35% Similarity=0.672 Sum_probs=36.0
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh----cCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ----HGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~----~~~~~CP~Cr~~~~~ 52 (634)
.|||||+...- +....|||.||+.||-.++. .+...||+|+..+..
T Consensus 188 ~CPICL~~~~~-----p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 188 QCPICLEPPSV-----PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred cCCcccCCCCc-----ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 59999998755 55566999999999999654 234479999987553
No 99
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1e-06 Score=99.47 Aligned_cols=50 Identities=30% Similarity=0.704 Sum_probs=42.6
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWK 51 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~ 51 (634)
+.|+||++.+..+....+..++|+|.||..|+..|.+. ..+||.||..+.
T Consensus 292 ~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 292 ELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLY 341 (543)
T ss_pred CeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhh
Confidence 47999999998865555677899999999999999987 669999999543
No 100
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=98.07 E-value=0.00013 Score=73.70 Aligned_cols=132 Identities=17% Similarity=0.230 Sum_probs=89.9
Q ss_pred cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEE---EEcCcccC---------HHHHHHHHHHHhcCCCCCCCcHHHHHH
Q 043643 183 KLPLLKRAVHFIIQNLGSADRLSIVIFSSVARR---IFPLQRMT---------DSGRENAIRAINTLSSNGGTNIVEGLK 250 (634)
Q Consensus 183 kl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~---~~pl~~~t---------~~~~~~~~~~I~~l~~~GgT~i~~aL~ 250 (634)
..+.+-+++..++..+.++.++-+..|+..... +.++-+.+ +.-.+...+.+..+...|.|++...|+
T Consensus 63 ~Yq~aI~~vg~il~~yD~D~~ip~~GFGa~~~~~~~v~~~f~~~~~~p~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~ 142 (254)
T cd01459 63 PYQKAIRIVGEVLQPYDSDKLIPAFGFGAIVTKDQSVFSFFPGYSESPECQGFEGVLRAYREALPNVSLSGPTNFAPVIR 142 (254)
T ss_pred HHHHHHHHHHHHHHhcCCCCceeeEeecccCCCCCccccccCCCCCCCcccCHHHHHHHHHHHhceeeecCcchHHHHHH
Confidence 556677777788888888889999999875321 22221000 111234445666778889999999999
Q ss_pred HHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCCeeEEEEEccCC
Q 043643 251 KGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPTFPVHTFGFGLE 330 (634)
Q Consensus 251 ~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~ 330 (634)
.+.+........+....+++||||..+. .....+.+. ++....+.|-.||+|.
T Consensus 143 ~a~~~a~~~~~~~~Y~VLLIiTDG~i~D------------------~~~t~~aIv--------~AS~~PlSIiiVGVGd- 195 (254)
T cd01459 143 AAANIAKASNSQSKYHILLIITDGEITD------------------MNETIKAIV--------EASKYPLSIVIVGVGD- 195 (254)
T ss_pred HHHHHHHHhcCCCceEEEEEECCCCccc------------------HHHHHHHHH--------HHhcCCeEEEEEEeCC-
Confidence 9999887654444455688999998762 222222222 2467889999999995
Q ss_pred CChHHHHHHHh
Q 043643 331 HDSEAMHAIAD 341 (634)
Q Consensus 331 ~d~~~L~~iA~ 341 (634)
.+...|+.+-.
T Consensus 196 ~~F~~M~~LD~ 206 (254)
T cd01459 196 GPFDAMERLDD 206 (254)
T ss_pred CChHHHHHhcC
Confidence 47888888875
No 101
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.06 E-value=2.9e-06 Score=86.65 Aligned_cols=52 Identities=21% Similarity=0.562 Sum_probs=37.8
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDV 53 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 53 (634)
.||||...--.......+..+|||.||..|+...+..+...||.|+..+...
T Consensus 5 ~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 5 GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 6999999533222333344589999999999996655566899998876543
No 102
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.02 E-value=3.6e-06 Score=68.49 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=37.7
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDV 53 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 53 (634)
.||||.+.|.+ |+.++|||.|.+.||..|+..+...||.|+..+...
T Consensus 6 ~CpIt~~lM~d-----PVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 6 LCPITGELMRD-----PVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp B-TTTSSB-SS-----EEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred CCcCcCcHhhC-----ceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 59999999999 999999999999999999988677999998876543
No 103
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.99 E-value=2e-06 Score=89.90 Aligned_cols=44 Identities=39% Similarity=0.908 Sum_probs=36.6
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~ 49 (634)
+|||||+.|... -.-+++..|.|+||..|+..|... +||+||.-
T Consensus 177 TCpVCLERMD~s-~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~ 220 (493)
T KOG0804|consen 177 TCPVCLERMDSS-TTGILTILCNHSFHCSCLMKWWDS---SCPVCRYC 220 (493)
T ss_pred CcchhHhhcCcc-ccceeeeecccccchHHHhhcccC---cChhhhhh
Confidence 799999999763 223677889999999999999754 89999964
No 104
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=3.2e-06 Score=82.73 Aligned_cols=51 Identities=22% Similarity=0.504 Sum_probs=39.1
Q ss_pred CccccccccccCC-----cceeEecCCCCccchhhHHHHHh-cCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQ-----GVAIFTAECSHSFHFCCIAANVQ-HGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~-----~~~~~~~~C~H~Fh~~Ci~~w~~-~~~~~CP~Cr~~~~~ 52 (634)
.|+||-..+.... -+...++.|+|.||..||..|.- ..+.+||.|+.+..-
T Consensus 226 vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 226 VCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred hhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 4999998875422 12467899999999999999985 345689999987543
No 105
>PRK05325 hypothetical protein; Provisional
Probab=97.85 E-value=0.0004 Score=74.07 Aligned_cols=165 Identities=16% Similarity=0.172 Sum_probs=100.4
Q ss_pred CCCCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcC-CCCeEEEEEeCC--CcEEEEcCcccCHHHHHHHHHHHhcCCC
Q 043643 164 DRAPIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLG-SADRLSIVIFSS--VARRIFPLQRMTDSGRENAIRAINTLSS 239 (634)
Q Consensus 164 ~r~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~-~~drvsIV~Fs~--~a~~~~pl~~~t~~~~~~~~~~I~~l~~ 239 (634)
+....=+++++|+||||.. +-+++|...-.+..-|. .-.+|-+|.-.+ .|+.+- . ...=....
T Consensus 219 p~s~AVmfclMDvSGSM~~~~K~lakrff~lly~fL~r~Y~~vEvvFI~H~t~AkEVd------E-------eeFF~~~e 285 (401)
T PRK05325 219 PESQAVMFCLMDVSGSMDEAEKDLAKRFFFLLYLFLRRKYENVEVVFIRHHTEAKEVD------E-------EEFFYSRE 285 (401)
T ss_pred ccCcEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCceeEcC------H-------HHccccCC
Confidence 3344557899999999999 88888886655554444 235555554443 344332 1 12224567
Q ss_pred CCCCcHHHHHHHHHHHHHhhccCC-CCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCC
Q 043643 240 NGGTNIVEGLKKGARVLEERRERS-PVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQP 318 (634)
Q Consensus 240 ~GgT~i~~aL~~A~~~l~~~~~~~-~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~ 318 (634)
.|||-+..|++.+.++++.+-.++ ..-.++-.|||.+.... + .....++.+.|.+
T Consensus 286 sGGT~vSSA~~l~~eIi~~rYpp~~wNIY~f~aSDGDNw~~D---------------~-~~~~~ll~~~llp-------- 341 (401)
T PRK05325 286 SGGTIVSSAYKLALEIIEERYPPAEWNIYAFQASDGDNWSSD---------------N-PRCVELLREELLP-------- 341 (401)
T ss_pred CCCeEehHHHHHHHHHHHhhCCHhHCeeEEEEcccCCCcCCC---------------C-HHHHHHHHHHHHH--------
Confidence 899999999999999998765443 33347789999765321 2 2333333323322
Q ss_pred CeeEEEEE-ccCC--CChHHHHHHHhhcCC----eEEEcCChhhHHHHHHHHhh
Q 043643 319 TFPVHTFG-FGLE--HDSEAMHAIADASGG----TFSFIETLSILQDAFARCIG 365 (634)
Q Consensus 319 ~i~I~t~G-~G~~--~d~~~L~~iA~~tgG----~~~~i~~~~~l~~~f~~~l~ 365 (634)
-...|+.+ ++.. ....+++........ ....|.+.++|-.+|..++.
T Consensus 342 ~~~~f~Y~Ev~~~~~~~~~l~~~y~~i~~~~~~f~~~~I~~~~dIyp~~r~lf~ 395 (401)
T PRK05325 342 VCNYFAYIEVTPRAYRHQTLWREYERLQDTFPNFAMQRIRDKEDIYPVFRELFK 395 (401)
T ss_pred HhhheEEEEecCCCCCchHHHHHHHHhhccCCCeEEEEeCCHHHHHHHHHHHhc
Confidence 11222222 2322 245666666644432 34678899999999988875
No 106
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=6.1e-06 Score=82.41 Aligned_cols=53 Identities=25% Similarity=0.567 Sum_probs=44.0
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCCCCCC
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQAP 58 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~~~~ 58 (634)
+.|+||+....- |+.+.|+|.||+.||..-.+.+..+|++||.++.+.-+..|
T Consensus 8 ~eC~IC~nt~n~-----Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~p 60 (324)
T KOG0824|consen 8 KECLICYNTGNC-----PVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEP 60 (324)
T ss_pred CcceeeeccCCc-----CccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcch
Confidence 479999998766 78899999999999998776667789999999876555444
No 107
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.77 E-value=0.00072 Score=69.17 Aligned_cols=169 Identities=16% Similarity=0.297 Sum_probs=103.6
Q ss_pred ceEEEEEeCCCCCCc---------cHHHHHHHHHHHHH-h--cCCCCeEEEEEeCCC-cEEEEcCcc-----cC------
Q 043643 168 IDLVTVLDVSGSMSS---------KLPLLKRAVHFIIQ-N--LGSADRLSIVIFSSV-ARRIFPLQR-----MT------ 223 (634)
Q Consensus 168 ~dlv~VlD~SgSM~g---------kl~~~K~al~~li~-~--L~~~drvsIV~Fs~~-a~~~~pl~~-----~t------ 223 (634)
-=|++|||++.--.| .|..+-+++.-|++ . +....+|+||+..+. .+.++|-.. .+
T Consensus 3 slL~vvlD~np~~W~~~~~~~~~~~l~~~l~sllvF~NahL~l~~~N~vaVIAs~~~~~~~LYps~~~~~~~~~~~~~~~ 82 (279)
T TIGR00627 3 SLLVVIIEANPCSWGMLALAHGKRTISKVLRAIVVFLNAHLAFNANNKLAVIASHSQDNKYLYPSTRCEDRNASELDPKR 82 (279)
T ss_pred cEEEEEEeCCHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCccCCEEEEEecCCcceEEecCCcccccccccccccc
Confidence 347899998865432 33333344433333 2 457899999988654 344554320 00
Q ss_pred -------------HHHHHHHHHHHhcCC----CCCCCcHHHHHHHHHHHHHhhcc-----CCCCcEEEEEeCCCCCCCCC
Q 043643 224 -------------DSGRENAIRAINTLS----SNGGTNIVEGLKKGARVLEERRE-----RSPVASIILLSDGQDTHNVL 281 (634)
Q Consensus 224 -------------~~~~~~~~~~I~~l~----~~GgT~i~~aL~~A~~~l~~~~~-----~~~~~~IILlTDG~~~~g~~ 281 (634)
+.-.+.+.+.++... ..+.+.+..||..|+-.+.+... ..-..+|++++-+.+.
T Consensus 83 ~~~~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~lagals~ALcyinr~~~~~~~~~~~~~RIlii~~s~~~---- 158 (279)
T TIGR00627 83 LRELLYRDFRTVDETIVEEIKPLMAHADKHMKKDSRTVLAGALSDALGYINRSEQSETASEKLKSRILVISITPDM---- 158 (279)
T ss_pred ccchhccchhHHHHHHHHHHHHHHhhchhcccccccccchhHHHhhhhhhcccccccccCcCCcceEEEEECCCCc----
Confidence 001122223333211 22577899999999998865321 1234578888765432
Q ss_pred CCcccccccCCCCCCHHHHHhhchhhhhccccccCCCCeeEEEEEccCCCChHHHHHHHhhcCCeEEEcCChhhHHHHH
Q 043643 282 RNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPTFPVHTFGFGLEHDSEAMHAIADASGGTFSFIETLSILQDAF 360 (634)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f 360 (634)
...|..++. .|. .+++.+|+|.+++++.+.+..+|+++++.|||.|..+.+...|.+.+
T Consensus 159 ---------------~~qYi~~mn-~If----aaqk~~I~Idv~~L~~e~~~~~lqQa~~~TgG~Y~~~~~~~~L~q~L 217 (279)
T TIGR00627 159 ---------------ALQYIPLMN-CIF----SAQKQNIPIDVVSIGGDFTSGFLQQAADITGGSYLHVKKPQGLLQYL 217 (279)
T ss_pred ---------------hHHHHHHHH-HHH----HHHHcCceEEEEEeCCccccHHHHHHHHHhCCEEeccCCHhHHHHHH
Confidence 124444432 232 25678999999999876678899999999999999999887665444
No 108
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=97.69 E-value=0.00019 Score=71.76 Aligned_cols=106 Identities=21% Similarity=0.306 Sum_probs=65.0
Q ss_pred EEEEEeCCCCCCc-------cHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCcE-------------EEEcCcccCHHH
Q 043643 170 LVTVLDVSGSMSS-------KLPLLKRAVHFIIQNL---GSADRLSIVIFSSVAR-------------RIFPLQRMTDSG 226 (634)
Q Consensus 170 lv~VlD~SgSM~g-------kl~~~K~al~~li~~L---~~~drvsIV~Fs~~a~-------------~~~pl~~~t~~~ 226 (634)
++||||+|.||.. .|+.+.+++..++... .+.|.||||.|++... ++.++...+
T Consensus 2 ~vflID~s~sM~~~~~~~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~~l~~l~~~~--- 78 (224)
T PF03731_consen 2 TVFLIDVSPSMFEPSSESESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIFVLQPLDPPS--- 78 (224)
T ss_dssp EEEEEE-SCGGGS-BTTCS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEEEEEECC--B---
T ss_pred EEEEEECCHHHCCCCCCcchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceEEeecCCccC---
Confidence 7999999999984 4777777776666543 4679999999987542 334555433
Q ss_pred HHHHHHHHhcCCC----------CCCCcHHHHHHHHHHHHHh--hccCCCCcEEEEEeCCCCCC
Q 043643 227 RENAIRAINTLSS----------NGGTNIVEGLKKGARVLEE--RRERSPVASIILLSDGQDTH 278 (634)
Q Consensus 227 ~~~~~~~I~~l~~----------~GgT~i~~aL~~A~~~l~~--~~~~~~~~~IILlTDG~~~~ 278 (634)
.+.++...+-+.. ....++..||..|..+|.. ...+...++|||+||+....
T Consensus 79 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p~ 142 (224)
T PF03731_consen 79 AERLKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGPH 142 (224)
T ss_dssp HHHHHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SSTT
T ss_pred HHHHHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCC
Confidence 3333333333332 3456899999999999976 33344567899999997665
No 109
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=1.5e-05 Score=83.11 Aligned_cols=40 Identities=40% Similarity=0.967 Sum_probs=36.0
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICR 47 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr 47 (634)
.|+||++.|.. +..++|+|+||..|+..++. ....||.||
T Consensus 15 ~C~iC~~~~~~-----p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr 54 (386)
T KOG2177|consen 15 TCPICLEYFRE-----PVLLPCGHNFCRACLTRSWE-GPLSCPVCR 54 (386)
T ss_pred cChhhHHHhhc-----CccccccchHhHHHHHHhcC-CCcCCcccC
Confidence 69999999988 67889999999999999777 566899999
No 110
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.67 E-value=1.2e-05 Score=62.04 Aligned_cols=45 Identities=27% Similarity=0.605 Sum_probs=23.2
Q ss_pred CccccccccccCCcceeE-ecCCCCccchhhHHHHHhcCCCcCcccccccccCC
Q 043643 2 TCPICLGSLRRGQGVAIF-TAECSHSFHFCCIAANVQHGNRICPICRCEWKDVP 54 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~-~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p 54 (634)
.|++|.+.++. |+ ...|.|.||..||..... ..||+|+.+-....
T Consensus 9 rCs~C~~~l~~-----pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~qD 54 (65)
T PF14835_consen 9 RCSICFDILKE-----PVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWIQD 54 (65)
T ss_dssp S-SSS-S--SS------B---SSS--B-TTTGGGGTT---TB-SSS--B-S-SS
T ss_pred CCcHHHHHhcC-----CceeccCccHHHHHHhHHhcC---CCCCCcCChHHHHH
Confidence 59999999988 65 588999999999977543 35999998754433
No 111
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. Integrins are important therapeutic targets in conditions such as atherosclerosis, thrombosis, cancer and asthma []. At the N terminus of the beta subunit is a cysteine-containing domain reminiscent of that found in presenillins and semaphorins, which has hence been termed the PSI domain. C-terminal to the PSI domain is an A-domain, which has been predicted to adopt a Rossmann fold similar to that of the alpha subunit, but with additional loops between the second and third beta strands []. The murine gene Pactolus shares significant similarity with the beta subunit [], but lacks either one or both of the inserted loops. The C-terminal portion of the beta subunit extracellular domain contains an internally disulphide-bonded cysteine-rich region, while the intracellular tail contains putative sites of interaction with a variety of intracellular signalling and cytoskeletal proteins, such as focal adhesion kinase and alpha-actinin respectively []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first 20 amino acids of the beta-subunit cytoplasmic domain are also alpha helical, but the final 25 residues are disordered and, apart from a turn that follows a conserved NPxY motif, appear to lack defined structure, suggesting that this is adopted on effector binding. The two membrane-proximal helices mediate the link between the subunits via a series of hydrophobic and electrostatic contacts. This entry represents the N-terminal portion of the extracellular region of integrin beta subunits.; GO: 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion; PDB: 3VI4_B 3VI3_B 2VDQ_B 3IJE_B 1M1X_B 2VDR_B 3NIF_B 3NID_D 1TYE_F 2Q6W_F ....
Probab=97.65 E-value=0.0021 Score=70.08 Aligned_cols=265 Identities=16% Similarity=0.169 Sum_probs=130.6
Q ss_pred CcceEEEeecccccccccCCCCceEEEEEEeCCCCCCCCCCCCceEEEEEeCCCCCCccHHHHHH---HHHHHHHhcCCC
Q 043643 125 AQALAVKAFPEFGAVAAAECPPKFAVLLRVCAPSLPNDADRAPIDLVTVLDVSGSMSSKLPLLKR---AVHFIIQNLGSA 201 (634)
Q Consensus 125 ~~~~~v~~~~~~~~~~~~~~~~~~~v~v~~~ap~~~~~~~r~p~dlv~VlD~SgSM~gkl~~~K~---al~~li~~L~~~ 201 (634)
++.+.|++-|.. ...+-|.++.+ ..-|+||.+++|.|+||...++.+|. .+..-++.+..+
T Consensus 76 PQ~v~l~LRpG~----------~~~f~v~~~~a------~~yPvDLYyLmDlS~Sm~ddl~~l~~lg~~l~~~~~~it~~ 139 (426)
T PF00362_consen 76 PQKVSLKLRPGE----------PVTFNVTVRPA------EDYPVDLYYLMDLSYSMKDDLENLKSLGQDLAEEMRNITSN 139 (426)
T ss_dssp SSEEEEEEETTB----------EEEEEEEEEBS------SS--EEEEEEEE-SGGGHHHHHHHCCCCHHHHHHHHTT-SS
T ss_pred cceeEEEeecce----------eEEEEEEEeec------cccceeEEEEeechhhhhhhHHHHHHHHHHHHHHHHhcCcc
Confidence 446666665542 34555666654 55799999999999999985555554 455556667788
Q ss_pred CeEEEEEeCCCc-----------------------------EEEEcCcccCHHHHHHHHHHHhcCCCCCCCcH----HHH
Q 043643 202 DRLSIVIFSSVA-----------------------------RRIFPLQRMTDSGRENAIRAINTLSSNGGTNI----VEG 248 (634)
Q Consensus 202 drvsIV~Fs~~a-----------------------------~~~~pl~~~t~~~~~~~~~~I~~l~~~GgT~i----~~a 248 (634)
-|+|+-+|-++. +.+++|+ .+...+.+.|++..-.|+-+- -+|
T Consensus 140 ~~~GfGsfvdK~~~P~~~~~p~~l~~pc~~~~~~c~~~~~f~~~l~Lt----~~~~~F~~~v~~~~is~n~D~PEgg~da 215 (426)
T PF00362_consen 140 FRLGFGSFVDKPVMPFVSTTPEKLKNPCPSKNPNCQPPFSFRHVLSLT----DDITEFNEEVNKQKISGNLDAPEGGLDA 215 (426)
T ss_dssp EEEEEEEESSSSSTTTST-SSHCHHSTSCCTTS--B---SEEEEEEEE----S-HHHHHHHHHTS--B--SSSSBSHHHH
T ss_pred ceEechhhcccccCCcccCChhhhcCcccccCCCCCCCeeeEEeeccc----chHHHHHHhhhhccccCCCCCCccccch
Confidence 999999997753 2344565 567889999988766554332 233
Q ss_pred HHHHHHHHHhhccCC-CCcEEEEEeCCCCCCCCCCC----------ccccccc-CCC---CCCHHHHHhhchhhhhcccc
Q 043643 249 LKKGARVLEERRERS-PVASIILLSDGQDTHNVLRN----------SYTQDEA-SSI---PSNELAYLNLLPSSICLSKR 313 (634)
Q Consensus 249 L~~A~~~l~~~~~~~-~~~~IILlTDG~~~~g~~~~----------~~~~~~~-~~~---~~~~~~~~~lv~~~i~~~~~ 313 (634)
|..|+---+.-.+++ ..+.||+.||+.-....... .+..+.. ... ..+-+.+..+.. .+.
T Consensus 216 l~Qa~vC~~~igWr~~a~~llv~~TD~~fH~agDg~l~gi~~pnd~~Chl~~~~~y~~~~~~DYPSv~ql~~-~l~---- 290 (426)
T PF00362_consen 216 LMQAAVCQEEIGWRNEARRLLVFSTDAGFHFAGDGKLAGIVKPNDGKCHLDDNGMYTASTEQDYPSVGQLVR-KLS---- 290 (426)
T ss_dssp HHHHHH-HHHHT--STSEEEEEEEESS-B--TTGGGGGT--S---SS--BSTTSBBGGGGCS----HHHHHH-HHH----
T ss_pred heeeeecccccCcccCceEEEEEEcCCccccccccccceeeecCCCceEECCCCcccccccccCCCHHHHHH-HHH----
Confidence 333321112223333 55678889998654322111 1111111 000 011112222211 111
Q ss_pred ccCCCCeeEEEEEccCCCChHHHHHHHhhcCCeEE-Ec-CChhhHHHHHHHHhhccccceeeeeEEEEEecCCCeEEEEe
Q 043643 314 EAGQPTFPVHTFGFGLEHDSEAMHAIADASGGTFS-FI-ETLSILQDAFARCIGGLLSVVSQDVKLTIRSKSAGVRIGSI 391 (634)
Q Consensus 314 ~~~~~~i~I~t~G~G~~~d~~~L~~iA~~tgG~~~-~i-~~~~~l~~~f~~~l~~l~s~va~~~~l~v~~~~~~v~i~~v 391 (634)
...-++|+++.=. -....+.|++.-.|.+. .+ .|...|.+.+.+.-..+. ..+.|...-.+.++.+.-.
T Consensus 291 --e~~i~~IFAVt~~---~~~~Y~~L~~~i~~s~vg~L~~dSsNIv~LI~~aY~~i~----s~V~L~~~~~p~~v~v~y~ 361 (426)
T PF00362_consen 291 --ENNINPIFAVTKD---VYSIYEELSNLIPGSSVGELSSDSSNIVQLIKEAYNKIS----SKVELKHDNAPDGVKVSYT 361 (426)
T ss_dssp --HTTEEEEEEEEGG---GHHHHHHHHHHSTTEEEEEESTTSHTHHHHHHHHHHHHC----TEEEEEECS--TTEEEEEE
T ss_pred --HcCCEEEEEEchh---hhhHHHHHhhcCCCceecccccCchhHHHHHHHHHHHHh----heEEEEecCCCCcEEEEEE
Confidence 1333467766432 23466777776666654 33 345556555555544444 3444544333456666422
Q ss_pred cCCCCCcccccCCc--eeEEEcCCccCCcEEEEEEEEEcCC
Q 043643 392 PSGRYNSEVLDEGQ--QAVIDIGNLYADEEKEFMVYLSIPV 430 (634)
Q Consensus 392 ~~~~~~~~~~~~~~--~~~i~lg~l~~~e~r~~lv~l~~p~ 430 (634)
+.-. ++. ...-.-..+.-|++..|-|.+.+-.
T Consensus 362 ------s~C~-~~~~~~~~~~C~~V~iG~~V~F~VtVta~~ 395 (426)
T PF00362_consen 362 ------SNCP-NGSTVPGTNECSNVKIGDTVTFNVTVTAKE 395 (426)
T ss_dssp ------EEES-SSEEEECCEEECSE-TT-EEEEEEEEEESS
T ss_pred ------EEcc-CCcccCcCccccCEecCCEEEEEEEEEEec
Confidence 1111 111 0112334677888999999998754
No 112
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=97.63 E-value=0.0016 Score=70.13 Aligned_cols=165 Identities=18% Similarity=0.217 Sum_probs=98.3
Q ss_pred CCCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCCCC
Q 043643 165 RAPIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLG---SADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLSSN 240 (634)
Q Consensus 165 r~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~---~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~~~ 240 (634)
....=+++++|+||||.. +-+++|...-.+...|. .+..+-.|...+.|+.+- .+..=....+
T Consensus 244 ~s~AVv~~lmDvSGSM~~~~K~lak~ff~~l~~fL~~~Y~~Ve~vfI~H~t~A~EVd-------------Ee~FF~~~es 310 (421)
T PF04285_consen 244 ESNAVVFCLMDVSGSMGEFKKDLAKRFFFWLYLFLRRKYENVEIVFIRHHTEAKEVD-------------EEEFFHSRES 310 (421)
T ss_pred cCcEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCceEEec-------------HHHhcccCCC
Confidence 344557899999999999 78888887665555554 233444455555555442 1122246778
Q ss_pred CCCcHHHHHHHHHHHHHhhccCC-CCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCC
Q 043643 241 GGTNIVEGLKKGARVLEERRERS-PVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPT 319 (634)
Q Consensus 241 GgT~i~~aL~~A~~~l~~~~~~~-~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~ 319 (634)
|||-+..|++.+.++++.+-.+. ..-.++-+|||.+-... +. ....++.+.+.+ .
T Consensus 311 GGT~vSSA~~l~~~ii~erypp~~wNiY~~~~SDGDN~~~D---------------~~-~~~~ll~~~llp--------~ 366 (421)
T PF04285_consen 311 GGTRVSSAYELALEIIEERYPPSDWNIYVFHASDGDNWSSD---------------NE-RCVELLEEELLP--------V 366 (421)
T ss_pred CCeEehHHHHHHHHHHHhhCChhhceeeeEEcccCccccCC---------------CH-HHHHHHHHHHHH--------h
Confidence 99999999999999998765442 33357889999765321 22 233333323332 1
Q ss_pred eeEEEEE-cc-CC-CC-hHHHHHHHhhcCC-eEEEcCChhhHHHHHHHHhhc
Q 043643 320 FPVHTFG-FG-LE-HD-SEAMHAIADASGG-TFSFIETLSILQDAFARCIGG 366 (634)
Q Consensus 320 i~I~t~G-~G-~~-~d-~~~L~~iA~~tgG-~~~~i~~~~~l~~~f~~~l~~ 366 (634)
+..+.++ ++ .. +. ...+..+...... ....|.+.++|-.+|..+++.
T Consensus 367 ~~~f~Y~Ei~~~~~~~~~~~~~~~~~~~~~f~~~~i~~~~di~~~~r~~f~~ 418 (421)
T PF04285_consen 367 CNYFGYGEITQPGRHSSWREYEELKESHDNFAMVRIREKEDIYPVFRELFKK 418 (421)
T ss_pred cCeEEEEEeccCccchHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHhcc
Confidence 1222221 22 11 11 1245555443332 235688899999999888753
No 113
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=97.57 E-value=0.0017 Score=68.14 Aligned_cols=102 Identities=21% Similarity=0.339 Sum_probs=68.3
Q ss_pred CCCCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcC-CCCeEEEEEeCC--CcEEEEcCcccCHHHHHHHHHHHhcCCC
Q 043643 164 DRAPIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLG-SADRLSIVIFSS--VARRIFPLQRMTDSGRENAIRAINTLSS 239 (634)
Q Consensus 164 ~r~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~-~~drvsIV~Fs~--~a~~~~pl~~~t~~~~~~~~~~I~~l~~ 239 (634)
+....=+++++|+||||.. +-+++|...-.+..-|. .-.+|-||.-.+ .|+.+- . +..=....
T Consensus 199 P~s~AV~fc~MDvSGSM~~~~K~lak~ff~~ly~FL~~~Y~~VeivFI~H~t~AkEVd------E-------eeFF~~~E 265 (371)
T TIGR02877 199 PESNAVVIAMMDTSGSMGQFKKYIARSFFFWMVKFLRTKYENVEICFISHHTEAKEVT------E-------EEFFHKGE 265 (371)
T ss_pred ccCcEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCeeEEcC------H-------HHhcccCC
Confidence 3344557899999999999 88888886655544444 234555555444 333331 1 12224567
Q ss_pred CCCCcHHHHHHHHHHHHHhhccCCC-CcEEEEEeCCCCCC
Q 043643 240 NGGTNIVEGLKKGARVLEERRERSP-VASIILLSDGQDTH 278 (634)
Q Consensus 240 ~GgT~i~~aL~~A~~~l~~~~~~~~-~~~IILlTDG~~~~ 278 (634)
.|||-+..|++.+.++++.+-.+.. .-..+-+|||.+..
T Consensus 266 sGGT~vSSA~~l~~eII~~rYpp~~wNIY~f~aSDGDNw~ 305 (371)
T TIGR02877 266 SGGTYCSSGYKKALEIIDERYNPARYNIYAFHFSDGDNLT 305 (371)
T ss_pred CCCeEehHHHHHHHHHHHhhCChhhCeeEEEEcccCCCcc
Confidence 8999999999999999987654432 33467799997653
No 114
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.51 E-value=0.00022 Score=73.77 Aligned_cols=111 Identities=29% Similarity=0.390 Sum_probs=68.2
Q ss_pred CCCCceEEEEEeCCCCCCccHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcC--CCCC
Q 043643 164 DRAPIDLVTVLDVSGSMSSKLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTL--SSNG 241 (634)
Q Consensus 164 ~r~p~dlv~VlD~SgSM~gkl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l--~~~G 241 (634)
.+.+..+|+++|+||||.+.-...-..+..+.+ .-.|+-+..|++.-..+.+.-+ ..+.+.+.+.+..- ...|
T Consensus 215 r~~~~~lvvL~DVSGSm~~ys~~~L~l~hAl~q---~~~R~~~F~F~TRLt~vT~~l~--~rD~~~Al~~~~a~v~dw~g 289 (395)
T COG3552 215 RRRKPPLVVLCDVSGSMSGYSRIFLHLLHALRQ---QRSRVHVFLFGTRLTRVTHMLR--ERDLEDALRRLSAQVKDWDG 289 (395)
T ss_pred ccCCCCeEEEEecccchhhhHHHHHHHHHHHHh---cccceeEEEeechHHHHHHHhc--cCCHHHHHHHHHhhcccccC
Confidence 446778999999999999822222222222222 2346668999987666554432 34455566555542 3469
Q ss_pred CCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCC
Q 043643 242 GTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNV 280 (634)
Q Consensus 242 gT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~ 280 (634)
||.|+..+..-.+....+. =.....|+|+|||.+..+.
T Consensus 290 gTrig~tl~aF~~~~~~~~-L~~gA~VlilsDg~drd~~ 327 (395)
T COG3552 290 GTRIGNTLAAFLRRWHGNV-LSGGAVVLILSDGLDRDDI 327 (395)
T ss_pred CcchhHHHHHHHccccccc-cCCceEEEEEecccccCCc
Confidence 9999998876444322111 1233569999999997653
No 115
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=1.5e-05 Score=58.67 Aligned_cols=47 Identities=28% Similarity=0.581 Sum_probs=35.8
Q ss_pred CCccccccccccCCcceeEecCCCC-ccchhhHHHHHhcCCCcCccccccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSH-SFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H-~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
|+|.||++.-.+ .+.-.||| ..|+.|-.+.++.....||+||++++.
T Consensus 8 dECTICye~pvd-----sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEHPVD-----SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred cceeeeccCcch-----HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 689999997544 34567999 469999888555446689999998764
No 116
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0032 Score=59.01 Aligned_cols=139 Identities=14% Similarity=0.235 Sum_probs=101.9
Q ss_pred eEEEEEeCCCCCC-c-----cHHHHHHHHHHHHHhc---CCCCeEEEEEeCCC-cEEEEcCcccCHHHHHHHHHHHhcCC
Q 043643 169 DLVTVLDVSGSMS-S-----KLPLLKRAVHFIIQNL---GSADRLSIVIFSSV-ARRIFPLQRMTDSGRENAIRAINTLS 238 (634)
Q Consensus 169 dlv~VlD~SgSM~-g-----kl~~~K~al~~li~~L---~~~drvsIV~Fs~~-a~~~~pl~~~t~~~~~~~~~~I~~l~ 238 (634)
..|+|||.|--|. | |++.-|+++..+++.- .|...+||++.... ..++.-+| ..+..++..+..+.
T Consensus 5 atvvliDNse~s~NgDy~ptRFeAQkd~ve~if~~K~ndnpEntiGli~~~~a~p~vlsT~T----~~~gkilt~lhd~~ 80 (243)
T COG5148 5 ATVVLIDNSEASQNGDYLPTRFEAQKDAVESIFSKKFNDNPENTIGLIPLVQAQPNVLSTPT----KQRGKILTFLHDIR 80 (243)
T ss_pred eEEEEEeChhhhhcCCCCcHHHHHHHHHHHHHHHHHhcCCccceeeeeecccCCcchhccch----hhhhHHHHHhcccc
Confidence 4789999986655 3 8999999999988654 25678999988764 44454455 55778999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCC
Q 043643 239 SNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQP 318 (634)
Q Consensus 239 ~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~ 318 (634)
-.|+..+..+|..|.-.|+.|..+....+||.+--..-. .++.++..+.. ..+..
T Consensus 81 ~~g~a~~~~~lqiaql~lkhR~nk~q~qriVaFvgSpi~-----------------esedeLirlak--------~lkkn 135 (243)
T COG5148 81 LHGGADIMRCLQIAQLILKHRDNKGQRQRIVAFVGSPIQ-----------------ESEDELIRLAK--------QLKKN 135 (243)
T ss_pred ccCcchHHHHHHHHHHHHhcccCCccceEEEEEecCccc-----------------ccHHHHHHHHH--------HHHhc
Confidence 999999999999999999988777666677776533222 13345554433 34568
Q ss_pred CeeEEEEEccCCCChHHH
Q 043643 319 TFPVHTFGFGLEHDSEAM 336 (634)
Q Consensus 319 ~i~I~t~G~G~~~d~~~L 336 (634)
++-|..|-||...+.+.|
T Consensus 136 nVAidii~fGE~~n~~~l 153 (243)
T COG5148 136 NVAIDIIFFGEAANMAGL 153 (243)
T ss_pred CeeEEEEehhhhhhhhHH
Confidence 999999999965444333
No 117
>PF12034 DUF3520: Domain of unknown function (DUF3520); InterPro: IPR021908 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 180 amino acids in length. This domain is found associated with PF00092 from PFAM.
Probab=97.42 E-value=0.00023 Score=67.58 Aligned_cols=93 Identities=17% Similarity=0.219 Sum_probs=71.4
Q ss_pred cccceeeeeEEEEEecCCCeEEEEecCCCCCcccc--cCCceeEEEcCCccCCcEEEEEEEEEcCCCCCCC---------
Q 043643 367 LLSVVSQDVKLTIRSKSAGVRIGSIPSGRYNSEVL--DEGQQAVIDIGNLYADEEKEFMVYLSIPVSSAEG--------- 435 (634)
Q Consensus 367 l~s~va~~~~l~v~~~~~~v~i~~v~~~~~~~~~~--~~~~~~~i~lg~l~~~e~r~~lv~l~~p~~~~~~--------- 435 (634)
.+.++|+|++++|+|++. .|..++..+|.++.. .|.+...++-|+|-+|++.+.++||. |......
T Consensus 2 tL~tiAkDVKiQVEFNP~--~V~~YRLIGYENR~L~~EDF~nD~vDAGEIGAGHsVTALYEi~-p~g~~~~~~~~lkY~~ 78 (183)
T PF12034_consen 2 TLFTIAKDVKIQVEFNPA--QVKEYRLIGYENRLLADEDFNNDKVDAGEIGAGHSVTALYEIV-PAGSKGEVVDDLKYQD 78 (183)
T ss_pred ccchhhhhheEEEEECHH--HhhHHhhcchhhcccccccccCccccccccCCCCEEEEEEEEE-ECCCCccccccccccc
Confidence 356899999999999753 567788889999875 46788999999999999999999997 5433210
Q ss_pred ---CCCCCccceEEEEEEEecCCCCceeee
Q 043643 436 ---EQRPECTALLDVFCTHKDSASMEIHQV 462 (634)
Q Consensus 436 ---~~~~~~~~l~~v~~~Y~~~~~~~~~~~ 462 (634)
.......+++.|.++|++|.+.+...+
T Consensus 79 ~~~~~~~~~~el~tvklRYK~P~~~~s~l~ 108 (183)
T PF12034_consen 79 NEAAPASNSGELATVKLRYKDPDGDKSRLI 108 (183)
T ss_pred cccCCCCCCCceEEEEEEeeCCCCCccEEE
Confidence 001123789999999999988765543
No 118
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=6.6e-05 Score=77.31 Aligned_cols=47 Identities=30% Similarity=0.641 Sum_probs=32.7
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCC--CcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGN--RICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~--~~CP~Cr~~ 49 (634)
.|.||- ++.+......-...|||.||..|+..|..... .+||.|+-.
T Consensus 6 ~C~Ic~-d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik 54 (465)
T KOG0827|consen 6 ECHICI-DGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIK 54 (465)
T ss_pred eeeEec-cCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeec
Confidence 599994 44443222222345999999999999997433 479999833
No 119
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=97.39 E-value=0.0073 Score=62.02 Aligned_cols=167 Identities=17% Similarity=0.275 Sum_probs=103.0
Q ss_pred eEEEEEeCCCCCCc------cHHHHHHHHHHHHHh---cCCCCeEEEEEeCCC-cEEEEcCcc-----------cCH--H
Q 043643 169 DLVTVLDVSGSMSS------KLPLLKRAVHFIIQN---LGSADRLSIVIFSSV-ARRIFPLQR-----------MTD--S 225 (634)
Q Consensus 169 dlv~VlD~SgSM~g------kl~~~K~al~~li~~---L~~~drvsIV~Fs~~-a~~~~pl~~-----------~t~--~ 225 (634)
=||+|||++.--.+ .|..+-+++..|++. +....+|+||+.+.. ++.++|-.. ++. .
T Consensus 3 LLvIILD~nP~~W~~~~~~~~l~~~l~~llvFlNahL~l~~~N~vaVIAs~~~~s~~LYP~~~~~~~~~~~~~~~~~~~~ 82 (276)
T PF03850_consen 3 LLVIILDTNPLAWGQLSDQLSLSQFLDSLLVFLNAHLALNHSNQVAVIASHSNSSKFLYPSPSSSESSNSGDVEMNSSDS 82 (276)
T ss_pred EEEEEEECCHHHHhhccccccHHHHHHHHHHHHHHHHhhCccCCEEEEEEcCCccEEEeCCCccccccCCCccccccccc
Confidence 37999999865544 444444555444442 457889999988765 455555432 000 0
Q ss_pred H------------HHHHHHHHhcCCCC----CCCcHHHHHHHHHHHHHhhccC------CCCcEEEE-EeCCCCCCCCCC
Q 043643 226 G------------RENAIRAINTLSSN----GGTNIVEGLKKGARVLEERRER------SPVASIIL-LSDGQDTHNVLR 282 (634)
Q Consensus 226 ~------------~~~~~~~I~~l~~~----GgT~i~~aL~~A~~~l~~~~~~------~~~~~IIL-lTDG~~~~g~~~ 282 (634)
+ .+.+.+.++..... ..+.+..||..|+-.+.+.... .-..+|++ ++-..+.
T Consensus 83 ~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~LagALS~ALCyINR~~~~~~~~~~~~~~RILv~~s~s~d~----- 157 (276)
T PF03850_consen 83 NKYRQFRNVDETVLEELKKLMSETSESSDSTTSSLLAGALSMALCYINRISRESPSGGTSLKSRILVIVSGSPDS----- 157 (276)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHhhhhhcccCCCCCcCccEEEEEecCCCc-----
Confidence 1 12222222222211 1378999999999888765221 22345666 4443332
Q ss_pred CcccccccCCCCCCHHHHHhhchhhhhccccccCCCCeeEEEEEccCCCChHHHHHHHhhcCCeEEEcCChhhHHHHH
Q 043643 283 NSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPTFPVHTFGFGLEHDSEAMHAIADASGGTFSFIETLSILQDAF 360 (634)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f 360 (634)
...|..++.- +- .|.+.+|+|.++-+|. .+..+|++.++.|||.|..+.+++.|-..+
T Consensus 158 --------------~~QYi~~MN~-iF----aAqk~~v~IDv~~L~~-~~s~fLqQa~d~T~G~y~~~~~~~~l~q~L 215 (276)
T PF03850_consen 158 --------------SSQYIPLMNC-IF----AAQKQKVPIDVCKLGG-KDSTFLQQASDITGGIYLKVSKPEGLLQYL 215 (276)
T ss_pred --------------cHHHHHHHHH-HH----HHhcCCceeEEEEecC-CchHHHHHHHHHhCceeeccCccccHHHHH
Confidence 1345554442 22 2578999999999997 678899999999999999999977654433
No 120
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=9.7e-05 Score=76.70 Aligned_cols=48 Identities=33% Similarity=0.722 Sum_probs=41.3
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh-cCCCcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ-HGNRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~-~~~~~CP~Cr~~ 49 (634)
+||||++.+.....+.++.+.|||-|-..||.+|+. .-...||.|..+
T Consensus 6 tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 6 TCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred cCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 799999999877788899999999999999999994 223469999765
No 121
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.36 E-value=0.00016 Score=53.82 Aligned_cols=43 Identities=26% Similarity=0.631 Sum_probs=31.7
Q ss_pred CccccccccccCCcceeEecCCC-----CccchhhHHHHHhc-CCCcCcccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECS-----HSFHFCCIAANVQH-GNRICPICR 47 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~w~~~-~~~~CP~Cr 47 (634)
.|-||++.. . ...++..+|. |.||..|+..|+.. ++..||+|+
T Consensus 1 ~CrIC~~~~-~--~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEG-D--EGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCC-C--CCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 489999822 2 2335667885 88999999999963 355899995
No 122
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.32 E-value=5.6e-05 Score=60.84 Aligned_cols=50 Identities=20% Similarity=0.562 Sum_probs=23.2
Q ss_pred CccccccccccCCcc-eeEe--cCCCCccchhhHHHHHhc---CC-------CcCcccccccc
Q 043643 2 TCPICLGSLRRGQGV-AIFT--AECSHSFHFCCIAANVQH---GN-------RICPICRCEWK 51 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~-~~~~--~~C~H~Fh~~Ci~~w~~~---~~-------~~CP~Cr~~~~ 51 (634)
.|+||+..+...+.. ..+. ..|++.||..|+..|+.. .+ ..||.|++++.
T Consensus 4 ~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 4 ECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 699999987632222 2233 479999999999999851 11 15999998753
No 123
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=97.28 E-value=0.002 Score=71.42 Aligned_cols=106 Identities=18% Similarity=0.177 Sum_probs=75.0
Q ss_pred ceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcCC-CCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCCCCCCCcH
Q 043643 168 IDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLGS-ADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLSSNGGTNI 245 (634)
Q Consensus 168 ~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~~-~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~~~GgT~i 245 (634)
-+.+.|.|+||||.| .++.+ -++..++..+.. .=+=.+|||+++++.+. +. ..+..+-.+.+.+...+++||+
T Consensus 341 ~n~iav~DvSGSM~~~pm~va-iaLgll~ae~~~~pf~~~~ITFs~~P~~~~-i~---g~~l~ekv~~~~~~~wg~nTn~ 415 (534)
T PF11443_consen 341 ENCIAVCDVSGSMSGPPMDVA-IALGLLIAELNKGPFKGRFITFSENPQLHK-IK---GDTLREKVRFIRRMDWGMNTNF 415 (534)
T ss_pred cceEEEEecCCccCccHHHHH-HHHHHHHHHhcccccCCeEEeecCCceEEE-ec---CCCHHHHHHHHHhCCcccCCcH
Confidence 588999999999999 66544 456666666653 22346899999987653 22 2345555667778888999999
Q ss_pred HHHHHHHHHHHHhhcc--CCCCcEEEEEeCCCCCC
Q 043643 246 VEGLKKGARVLEERRE--RSPVASIILLSDGQDTH 278 (634)
Q Consensus 246 ~~aL~~A~~~l~~~~~--~~~~~~IILlTDG~~~~ 278 (634)
...+..-+.......- ..-++.|+++||=+-+.
T Consensus 416 ~aVFdlIL~~Av~~~l~~e~M~k~lfV~SDMeFD~ 450 (534)
T PF11443_consen 416 QAVFDLILETAVKNKLKQEDMPKRLFVFSDMEFDQ 450 (534)
T ss_pred HHHHHHHHHHHHHcCCChHHCCceEEEEecccccc
Confidence 9999887777654332 23467899999876543
No 124
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=97.26 E-value=0.028 Score=54.30 Aligned_cols=172 Identities=16% Similarity=0.278 Sum_probs=102.1
Q ss_pred CCceEEEEEeCCCCCC------ccHHHHHHHHHHHHH-hc--CCCCeEEEEE-eCCCcEEEEcCc---------------
Q 043643 166 APIDLVTVLDVSGSMS------SKLPLLKRAVHFIIQ-NL--GSADRLSIVI-FSSVARRIFPLQ--------------- 220 (634)
Q Consensus 166 ~p~dlv~VlD~SgSM~------gkl~~~K~al~~li~-~L--~~~drvsIV~-Fs~~a~~~~pl~--------------- 220 (634)
.|.=|+++||.-.--. |....+-.++.-+++ .| ..+.||++|+ |+...+.++|-.
T Consensus 19 spslL~viid~~p~~W~~~~ek~~~~kvl~di~VFLNAhlaf~~~NrVaVva~~s~~~~yLypss~s~~k~se~e~tr~s 98 (296)
T COG5242 19 SPSLLFVIIDLEPENWELTTEKGSRDKVLNDIVVFLNAHLAFSRNNRVAVVAGYSQGKTYLYPSSESALKASESENTRNS 98 (296)
T ss_pred CCceEEEEEecChhhcccccccccHHHHHHHHHHHHHHHHhhccCCeEEEEEeccCceEEeccCcchhhhhhcccCccch
Confidence 3666777777653222 234555555544443 33 4678998876 455566666522
Q ss_pred -------ccCHHHHHHHHHHHhcC-CCCCCCcHHHHHHHHHHHHHhhccCCCC-cEEEEEeC-CCCCCCCCCCccccccc
Q 043643 221 -------RMTDSGRENAIRAINTL-SSNGGTNIVEGLKKGARVLEERRERSPV-ASIILLSD-GQDTHNVLRNSYTQDEA 290 (634)
Q Consensus 221 -------~~t~~~~~~~~~~I~~l-~~~GgT~i~~aL~~A~~~l~~~~~~~~~-~~IILlTD-G~~~~g~~~~~~~~~~~ 290 (634)
.+++.....+.+.++.- +...-+.++.||..|+.....+..++.. ++|+++|= |.+..
T Consensus 99 d~yrrfr~vde~~i~eiyrl~e~~~k~sqr~~v~gams~glay~n~~~~e~slkSriliftlsG~d~~------------ 166 (296)
T COG5242 99 DMYRRFRNVDETDITEIYRLIEHPHKNSQRYDVGGAMSLGLAYCNHRDEETSLKSRILIFTLSGRDRK------------ 166 (296)
T ss_pred hhhhhhcccchHHHHHHHHHHhCcccccceeehhhhhhhhHHHHhhhcccccccceEEEEEecCchhh------------
Confidence 11111222233333221 1223588999999999998877655443 45777775 53321
Q ss_pred CCCCCCHHHHHhhchhhhhccccccCCCCeeEEEEEccCCCChHHHHHHHhhcCCeEEEcCChhhHHHHHHHH
Q 043643 291 SSIPSNELAYLNLLPSSICLSKREAGQPTFPVHTFGFGLEHDSEAMHAIADASGGTFSFIETLSILQDAFARC 363 (634)
Q Consensus 291 ~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f~~~ 363 (634)
..|...+. .|- .+.+.+++|..|.++.+ ..+|.+.++.|||.|..++|++.+-.-+...
T Consensus 167 -------~qYip~mn-CiF----~Aqk~~ipI~v~~i~g~--s~fl~Q~~daTgG~Yl~ve~~eGllqyL~~~ 225 (296)
T COG5242 167 -------DQYIPYMN-CIF----AAQKFGIPISVFSIFGN--SKFLLQCCDATGGDYLTVEDTEGLLQYLLSL 225 (296)
T ss_pred -------hhhchhhh-hee----ehhhcCCceEEEEecCc--cHHHHHHhhccCCeeEeecCchhHHHHHHHH
Confidence 12222211 122 24578999999998754 6799999999999999999988765544443
No 125
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.21 E-value=8.5e-05 Score=82.35 Aligned_cols=52 Identities=25% Similarity=0.477 Sum_probs=40.5
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCCCC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQ 56 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~~ 56 (634)
.|++|+..+.+ ........|+|.||.+||..|.+. -.+||+||..|..+-..
T Consensus 125 ~CP~Ci~s~~D--qL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~v~V~ 176 (1134)
T KOG0825|consen 125 QCPNCLKSCND--QLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGEVKVL 176 (1134)
T ss_pred hhhHHHHHHHH--HhhccccccccccHHHHhhhhhhh-cccCchhhhhhheeeee
Confidence 48888888866 233344679999999999999986 44899999998765544
No 126
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=97.19 E-value=0.0067 Score=69.14 Aligned_cols=111 Identities=14% Similarity=0.190 Sum_probs=74.8
Q ss_pred eEEEEEeCCCCCCc---------cHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCc----------EEEEcCcccCHHH
Q 043643 169 DLVTVLDVSGSMSS---------KLPLLKRAVHFIIQNL---GSADRLSIVIFSSVA----------RRIFPLQRMTDSG 226 (634)
Q Consensus 169 dlv~VlD~SgSM~g---------kl~~~K~al~~li~~L---~~~drvsIV~Fs~~a----------~~~~pl~~~t~~~ 226 (634)
-|+|+||+|.||-. .+..+..++..++.+. .++|-||||.|++.. .++.+|...+...
T Consensus 12 ailflIDvs~sM~~~~~~~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~~~L~~p~a~~ 91 (584)
T TIGR00578 12 SLIFLVDASKAMFEESQGEDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKR 91 (584)
T ss_pred EEEEEEECCHHHcCCCcCcCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEEeeCCCCCHHH
Confidence 48999999999983 4677777777777654 489999999999853 2355666544443
Q ss_pred HHHHHHHHhc-----C--CCCCC--CcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCC
Q 043643 227 RENAIRAINT-----L--SSNGG--TNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHN 279 (634)
Q Consensus 227 ~~~~~~~I~~-----l--~~~Gg--T~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g 279 (634)
...+...+.. + ..+.+ ..+.++|..+.++|.....+-..++|+|+||-..-.+
T Consensus 92 i~~L~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~D~P~~ 153 (584)
T TIGR00578 92 ILELDQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQFRMSHKRIMLFTNEDNPHG 153 (584)
T ss_pred HHHHHHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcchhhcCcEEEEECCCCCCCC
Confidence 3333333322 0 11111 3789999999999986433334578999999866543
No 127
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00017 Score=75.43 Aligned_cols=51 Identities=29% Similarity=0.627 Sum_probs=36.8
Q ss_pred CCccccccccccCC---cceeEecCCCCccchhhHHHHHhcC------CCcCcccccccc
Q 043643 1 KTCPICLGSLRRGQ---GVAIFTAECSHSFHFCCIAANVQHG------NRICPICRCEWK 51 (634)
Q Consensus 1 ~~C~ICl~~~~~~~---~~~~~~~~C~H~Fh~~Ci~~w~~~~------~~~CP~Cr~~~~ 51 (634)
+.|.||++.+.... ..--+..+|.|.||..||..|.... .+.||.||....
T Consensus 162 k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 162 KECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 47999999886521 0012236799999999999999422 357999998643
No 128
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=97.16 E-value=0.0024 Score=67.58 Aligned_cols=174 Identities=18% Similarity=0.176 Sum_probs=95.0
Q ss_pred EEEEEeCCCCCCc-cHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCcEEEEc--------CcccCHHHHHHHHHHHhc---
Q 043643 170 LVTVLDVSGSMSS-KLPLLKRAVHFIIQNLG-SADRLSIVIFSSVARRIFP--------LQRMTDSGRENAIRAINT--- 236 (634)
Q Consensus 170 lv~VlD~SgSM~g-kl~~~K~al~~li~~L~-~~drvsIV~Fs~~a~~~~p--------l~~~t~~~~~~~~~~I~~--- 236 (634)
|.+|||.||||.| +|..+-.....+...|. .+..+-|..|.+.+..=-+ -.+..+.-...++..|..
T Consensus 416 VtlviDnSGSMrGRpItvAatcAdilArtLeRcgVk~eIlGFTT~awkGg~sre~wlk~Gkp~~pgrlndlrhiiyksAd 495 (620)
T COG4547 416 VTLVIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTKAWKGGQSRETWLKRGKPAFPGRLNDLRHIIYKSAD 495 (620)
T ss_pred heeeeccCCCcCCcceehhHHHHHHHHHHHHHcCCceEEeeeeeccccCCccHHHHHhcCCCCCchhhhhHHHHHHhccC
Confidence 5689999999999 88888777777777775 5778888888775411000 000000001122222221
Q ss_pred -----------CCC-CC--CCcH-HHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHH
Q 043643 237 -----------LSS-NG--GTNI-VEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYL 301 (634)
Q Consensus 237 -----------l~~-~G--gT~i-~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~ 301 (634)
+.. .| --|| +++|..|...|-.+.... +.++++|||.|-...+-. .+ +++.-...+.
T Consensus 496 aPwrRARrnlGlmmreglLkeNiDGEal~wah~rl~gRpEqr--kIlmmiSDGAPvddstls---vn---pGnylerHLR 567 (620)
T COG4547 496 APWRRARRNLGLMMREGLLKENIDGEALMWAHQRLIGRPEQR--KILMMISDGAPVDDSTLS---VN---PGNYLERHLR 567 (620)
T ss_pred CHHHHHHhhcchhhhcchhhccCChHHHHHHHHHHhcChhhc--eEEEEecCCCcccccccc---cC---CchHHHHHHH
Confidence 111 11 1233 588888888887765443 458899999885431110 00 1111223333
Q ss_pred hhchhhhhccccccCCCCeeEEEEEccCCCChHHHHHHHhhcCCeEEEcCChhhHHHHHHHHhhcc
Q 043643 302 NLLPSSICLSKREAGQPTFPVHTFGFGLEHDSEAMHAIADASGGTFSFIETLSILQDAFARCIGGL 367 (634)
Q Consensus 302 ~lv~~~i~~~~~~~~~~~i~I~t~G~G~~~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f~~~l~~l 367 (634)
.++. .|. ....|.+.+||+|.+.-...-+ . +.|-|.++|..++...+..|
T Consensus 568 aVie-eIE------trSpveLlAIGighDvtRyYrr--------a-vtiVdaeeL~gamteqLa~l 617 (620)
T COG4547 568 AVIE-EIE------TRSPVELLAIGIGHDVTRYYRR--------A-VTIVDAEELAGAMTEQLAAL 617 (620)
T ss_pred HHHH-HHh------cCCchhheeeecccccchhhhh--------h-eeEecHHHhchHHHHHHHHH
Confidence 3332 333 3577889999999765422222 1 23445777666655554433
No 129
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0003 Score=75.16 Aligned_cols=49 Identities=29% Similarity=0.715 Sum_probs=41.5
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCCCC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQ 56 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~~ 56 (634)
.|.||...+.. +++++|||.||..||.+-+.+ ...||.||..+.+.+..
T Consensus 86 ~c~vc~~~l~~-----pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~ 134 (398)
T KOG4159|consen 86 ECCVCSRALYP-----PVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPAL 134 (398)
T ss_pred hhhhhHhhcCC-----CccccccccccHHHHHHHhcc-CCCCcccccccccchHH
Confidence 49999999988 888899999999999986654 66799999998875544
No 130
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0005 Score=67.97 Aligned_cols=35 Identities=23% Similarity=0.598 Sum_probs=28.5
Q ss_pred eeEecCCCCccchhhHHH-HHhcCCCcCcccccccc
Q 043643 17 AIFTAECSHSFHFCCIAA-NVQHGNRICPICRCEWK 51 (634)
Q Consensus 17 ~~~~~~C~H~Fh~~Ci~~-w~~~~~~~CP~Cr~~~~ 51 (634)
.+..++|||.||..||.. |-......||+||++..
T Consensus 227 ~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 227 VPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred CcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 456688999999999999 88765556999999743
No 131
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.74 E-value=0.00047 Score=64.71 Aligned_cols=42 Identities=29% Similarity=0.597 Sum_probs=36.1
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~ 49 (634)
.|.||-.++.. |+...|||.||..|...-.+. ...|-+|.+.
T Consensus 198 ~C~iCKkdy~s-----pvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~ 239 (259)
T COG5152 198 LCGICKKDYES-----PVVTECGHSFCSLCAIRKYQK-GDECGVCGKA 239 (259)
T ss_pred eehhchhhccc-----hhhhhcchhHHHHHHHHHhcc-CCcceecchh
Confidence 49999999988 888999999999999886665 4479999765
No 132
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.67 E-value=0.034 Score=61.08 Aligned_cols=151 Identities=16% Similarity=0.220 Sum_probs=102.0
Q ss_pred CCceEEEEEeCCCCCC-------------c---cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCc------EEEE--cCcc
Q 043643 166 APIDLVTVLDVSGSMS-------------S---KLPLLKRAVHFIIQNLGSADRLSIVIFSSVA------RRIF--PLQR 221 (634)
Q Consensus 166 ~p~dlv~VlD~SgSM~-------------g---kl~~~K~al~~li~~L~~~drvsIV~Fs~~a------~~~~--pl~~ 221 (634)
.-+++.+-||.+.|-. + ..+.+-.++..+++...++.++.-..|+... .-.+ .+.+
T Consensus 284 ~~lnf~vgIDfTaSNg~p~~~sSLHyi~p~~~N~Y~~Ai~~vG~~lq~ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~ 363 (529)
T KOG1327|consen 284 EQLNFTVGIDFTASNGDPRNPSSLHYIDPHQPNPYEQAIRSVGETLQDYDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNP 363 (529)
T ss_pred ceeeeEEEEEEeccCCCCCCCCcceecCCCCCCHHHHHHHHHhhhhcccCCCCccccccccccCCCCcccccceeecCCC
Confidence 3466777777777632 1 5667777778888888888899988888772 2222 2332
Q ss_pred cCH--HH----HHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHhhcc-CCCCcEEEEEeCCCCCCCCCCCcccccccCCCC
Q 043643 222 MTD--SG----RENAIRAINTLSSNGGTNIVEGLKKGARVLEERRE-RSPVASIILLSDGQDTHNVLRNSYTQDEASSIP 294 (634)
Q Consensus 222 ~t~--~~----~~~~~~~I~~l~~~GgT~i~~aL~~A~~~l~~~~~-~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~ 294 (634)
.++ .+ .....+.+-.++..|.||+..-|..+++...+... ....-.++++|||..+.
T Consensus 364 ~~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~~~~qY~VLlIitDG~vTd---------------- 427 (529)
T KOG1327|consen 364 EDPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGNTAGQYHVLLIITDGVVTD---------------- 427 (529)
T ss_pred CCCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhccCCcceEEEEEEeCCcccc----------------
Confidence 222 12 34555666678889999999999999999976642 22334578899999773
Q ss_pred CCHHHHHhhchhhhhccccccCCCCeeEEEEEccCCCChHHHHHHHhhc
Q 043643 295 SNELAYLNLLPSSICLSKREAGQPTFPVHTFGFGLEHDSEAMHAIADAS 343 (634)
Q Consensus 295 ~~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~~d~~~L~~iA~~t 343 (634)
.......++ .|....+.|-.+|+| +.+.+.|+.+-...
T Consensus 428 -m~~T~~AIV---------~AS~lPlSIIiVGVG-d~df~~M~~lD~d~ 465 (529)
T KOG1327|consen 428 -MKETRDAIV---------SASDLPLSIIIVGVG-DADFDMMRELDGDD 465 (529)
T ss_pred -HHHHHHHHH---------hhccCCeEEEEEEeC-CCCHHHHHHhhcCC
Confidence 122233322 256788999999999 67888888886543
No 133
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=96.64 E-value=0.0005 Score=68.67 Aligned_cols=50 Identities=34% Similarity=0.755 Sum_probs=38.2
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHh------------------c----CCCcCccccccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ------------------H----GNRICPICRCEWKD 52 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~------------------~----~~~~CP~Cr~~~~~ 52 (634)
..|.|||--|.+ +.+.....|-|.||+.|+.+++. + -...||+||.+++.
T Consensus 116 gqCvICLygfa~--~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 116 GQCVICLYGFAS--SPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CceEEEEEeecC--CCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 369999999977 45466689999999999988763 1 02369999988653
No 134
>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]
Probab=96.64 E-value=0.29 Score=53.79 Aligned_cols=288 Identities=11% Similarity=0.154 Sum_probs=155.4
Q ss_pred CCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEE------------c-CcccC--------
Q 043643 166 APIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIF------------P-LQRMT-------- 223 (634)
Q Consensus 166 ~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~------------p-l~~~t-------- 223 (634)
-|.-..||+|+-. .+ .+..+|+++...+..|+++.-+|+|+|++...+.- . -..++
T Consensus 121 ~ppvf~fvvD~~~--D~e~l~~LkdslivslsllppeaLvglItygt~i~v~el~ae~~~r~~VF~g~~eyt~~~L~~ll 198 (755)
T COG5047 121 LPPVFFFVVDACC--DEEELTALKDSLIVSLSLLPPEALVGLITYGTSIQVHELNAENHRRSYVFSGNKEYTKENLQELL 198 (755)
T ss_pred CCceEEEEEEeec--CHHHHHHHHHHHHHHHhcCCccceeeEEEecceeEEEeccccccCcceeecchHHHHHHHHHHHh
Confidence 4566889999875 55 99999999999999999999999999998764421 0 00000
Q ss_pred ------------------------------HHHHHHHHHHHhcCCCC------C---CCcHHHHHHHHHHHHHhhccCCC
Q 043643 224 ------------------------------DSGRENAIRAINTLSSN------G---GTNIVEGLKKGARVLEERRERSP 264 (634)
Q Consensus 224 ------------------------------~~~~~~~~~~I~~l~~~------G---gT~i~~aL~~A~~~l~~~~~~~~ 264 (634)
..-...+.+.|.+|.++ | --..+.||..|..+|+.. .++.
T Consensus 199 ~~~~~~~~~~~es~is~~~~~~~~rFl~p~q~ce~~L~n~le~L~pd~~~v~~~~Rp~RCTGsAl~ias~Ll~~~-~p~~ 277 (755)
T COG5047 199 ALSKPTKSGGFESKISGIGQFASSRFLLPTQQCEFKLLNILEQLQPDPWPVPAGKRPLRCTGSALNIASSLLEQC-FPNA 277 (755)
T ss_pred cccCCCCcchhhhhcccccccchhhhhccHHHHHHHHHHHHHHhCCCCccCCCCCCCccccchhHHHHHHHHHhh-ccCc
Confidence 01112344555555442 2 234567777777777654 3566
Q ss_pred CcEEEEEeCCCCCCCCCCC---cccccccCCCC-C-CHHHHHhhchhhhhccccccCCCCeeEEEEEcc--CCCChHHHH
Q 043643 265 VASIILLSDGQDTHNVLRN---SYTQDEASSIP-S-NELAYLNLLPSSICLSKREAGQPTFPVHTFGFG--LEHDSEAMH 337 (634)
Q Consensus 265 ~~~IILlTDG~~~~g~~~~---~~~~~~~~~~~-~-~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G~G--~~~d~~~L~ 337 (634)
..+|+|++.|.-+.|.+.- .....-+.+.. . +...+..-..+.+...++.....|-.+..|. | ....--.|+
T Consensus 278 ~~~i~lF~~GPcTvGpG~Vvs~elkEpmRshH~ie~d~aqh~kka~KFY~~laeR~a~~gh~~Difa-gcldqIGI~eM~ 356 (755)
T COG5047 278 GCHIVLFAGGPCTVGPGTVVSTELKEPMRSHHDIESDSAQHSKKATKFYKGLAERVANQGHALDIFA-GCLDQIGIMEME 356 (755)
T ss_pred ceeEEEEcCCCccccCceeeehhhcccccccccccccchhhccchHHHHHHHHHHHhccchhHHHHH-HHHHhhhhhcch
Confidence 6789999999999876542 00000000000 0 0000000000011111111122222222111 1 111223688
Q ss_pred HHHhhcCCeEEEcCChhhHHHHHHHHhhccccc-------eeeeeEEEEEecCCCeEEEEecCCC---------CCcccc
Q 043643 338 AIADASGGTFSFIETLSILQDAFARCIGGLLSV-------VSQDVKLTIRSKSAGVRIGSIPSGR---------YNSEVL 401 (634)
Q Consensus 338 ~iA~~tgG~~~~i~~~~~l~~~f~~~l~~l~s~-------va~~~~l~v~~~~~~v~i~~v~~~~---------~~~~~~ 401 (634)
.++..+||...-.+++.. +.|.+-...++.. .+-+..+.|.. +++++|..+-..+ ....-.
T Consensus 357 ~L~~sTgg~lvlsdsF~t--~ifkqSfqrif~~d~~g~l~~gfNa~m~V~T-sKnl~~~g~ig~a~~~~k~~~ni~~~ei 433 (755)
T COG5047 357 PLTTSTGGALVLSDSFTT--SIFKQSFQRIFNRDSEGYLKMGFNANMEVKT-SKNLKIKGLIGHAVSVKKKANNISDSEI 433 (755)
T ss_pred hhccCCcceEEEeccccH--HHHHHHHHHHhCcCcccchhhhhccceeEee-ccCceeeeeecceeeecccccccccccc
Confidence 899999999887777653 3344444444332 55667777774 5676665542111 000011
Q ss_pred cCCceeEEEcCCccCCcEEEEEEEEEcCCCCCCCCCCCCccceEEEEEEEecCCCCceeee
Q 043643 402 DEGQQAVIDIGNLYADEEKEFMVYLSIPVSSAEGEQRPECTALLDVFCTHKDSASMEIHQV 462 (634)
Q Consensus 402 ~~~~~~~i~lg~l~~~e~r~~lv~l~~p~~~~~~~~~~~~~~l~~v~~~Y~~~~~~~~~~~ 462 (634)
+=|...++.++.|..-..-.+.|++.........+.. ....+|..-+|.+..+.-.++|
T Consensus 434 gi~~t~swkm~slsPk~nyal~fei~~~~~~~~~~~~--~~a~iQfiT~yQhss~t~riRV 492 (755)
T COG5047 434 GIGATNSWKMASLSPKSNYALYFEIALGAASGSAQRP--AEAYIQFITTYQHSSGTYRIRV 492 (755)
T ss_pred cccccccccccccCCCcceEEEEEeccccCCCccCCc--ccchhhhhhhhhccCCcEEEEE
Confidence 1234557888889888888888888754433221111 1455666667877644333444
No 135
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.62 E-value=0.0011 Score=51.00 Aligned_cols=39 Identities=31% Similarity=0.733 Sum_probs=27.6
Q ss_pred CccccccccccCCcceeEe-cCCCCccchhhHHHHHh-cCCCcCcc
Q 043643 2 TCPICLGSLRRGQGVAIFT-AECSHSFHFCCIAANVQ-HGNRICPI 45 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~-~~C~H~Fh~~Ci~~w~~-~~~~~CP~ 45 (634)
.|||.+..|.+ |+. ..|+|.|-...|..|++ .+...||+
T Consensus 13 ~CPiT~~~~~~-----PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 13 KCPITLQPFED-----PVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B-TTTSSB-SS-----EEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred CCCCcCChhhC-----CcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 69999999987 665 68999999999999994 33457998
No 136
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.55 E-value=0.00075 Score=72.07 Aligned_cols=44 Identities=27% Similarity=0.718 Sum_probs=36.6
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh----cCCCcCccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ----HGNRICPICRCEW 50 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~----~~~~~CP~Cr~~~ 50 (634)
.|.+|.+.-.+ .+...|.|.||+-||..++. ..+.+||.|...+
T Consensus 538 ~C~lc~d~aed-----~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 538 ECGLCHDPAED-----YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred eecccCChhhh-----hHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 59999999877 77789999999999988773 4467899997653
No 137
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.52 E-value=0.0018 Score=47.36 Aligned_cols=47 Identities=23% Similarity=0.626 Sum_probs=24.6
Q ss_pred ccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccc
Q 043643 3 CPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEW 50 (634)
Q Consensus 3 C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~ 50 (634)
||+|.+.+.. .+.....-+|++..|+.|...-.......||-||.++
T Consensus 1 cp~C~e~~d~-~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDE-TDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--C-CCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCccccccc-CCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 8999999943 3444555689999999998887765566899999875
No 138
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=96.51 E-value=0.043 Score=54.23 Aligned_cols=111 Identities=14% Similarity=0.253 Sum_probs=76.3
Q ss_pred CCCCCceEEEEEeCCCCCCccHHHHHH-HHHHHHHhcC-------------CCCeEEEEEeCCCcE------EEEcCccc
Q 043643 163 ADRAPIDLVTVLDVSGSMSSKLPLLKR-AVHFIIQNLG-------------SADRLSIVIFSSVAR------RIFPLQRM 222 (634)
Q Consensus 163 ~~r~p~dlv~VlD~SgSM~gkl~~~K~-al~~li~~L~-------------~~drvsIV~Fs~~a~------~~~pl~~~ 222 (634)
.+..-.|||||||.+..|...+..+|. -+.-+++.+. ....++||+|.+..- ..++++
T Consensus 9 ~~~~~~~vVfvvEgTAalgpy~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~d~~~~~~v~~~g~T-- 86 (226)
T PF11265_consen 9 DQPPQAQVVFVVEGTAALGPYWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTADCYPEPIVQRSGPT-- 86 (226)
T ss_pred ccCccceEEEEEecchhhhhhHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEeccCCCcccceeccCCc--
Confidence 345668999999999999875555554 3344444443 235789999987631 223444
Q ss_pred CHHHHHHHHHHHhcCCCCC-----CCcHHHHHHHHHHHHHhhc----c-C--CCCcEEEEEeCCCCC
Q 043643 223 TDSGRENAIRAINTLSSNG-----GTNIVEGLKKGARVLEERR----E-R--SPVASIILLSDGQDT 277 (634)
Q Consensus 223 t~~~~~~~~~~I~~l~~~G-----gT~i~~aL~~A~~~l~~~~----~-~--~~~~~IILlTDG~~~ 277 (634)
.+...+.++|+++.-.| .+++.+||..|++.+.+.. . . ...++.||++--.|.
T Consensus 87 --~~~~~fl~~L~~I~f~GGG~e~~a~iaEGLa~AL~~fd~~~~~r~~~~~~~~~khcILI~nSpP~ 151 (226)
T PF11265_consen 87 --SSPQKFLQWLDAIQFSGGGFESCAAIAEGLAEALQCFDDFKQMRQQQQQTDVQKHCILICNSPPY 151 (226)
T ss_pred --CCHHHHHHHHHccCcCCCCcccchhHHHHHHHHHHHhcchhhhccccCcccccceEEEEeCCCCc
Confidence 45788999999986544 2469999999999997422 1 1 134789999988764
No 139
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.48 E-value=0.00098 Score=68.93 Aligned_cols=47 Identities=32% Similarity=0.739 Sum_probs=38.7
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh-cCCCcCcccccccccC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ-HGNRICPICRCEWKDV 53 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~-~~~~~CP~Cr~~~~~~ 53 (634)
-|-||-+.-++ +..-+|||-.|..|+..|.. .+..+||.||..++..
T Consensus 371 LCKICaendKd-----vkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKD-----VKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCC-----cccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 48999987666 66678999999999999985 3366899999987654
No 140
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=96.45 E-value=0.03 Score=51.96 Aligned_cols=120 Identities=22% Similarity=0.275 Sum_probs=83.3
Q ss_pred cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCc------EEEEcCcccC--------HHHHHHHHHHHhcCCCCCCCcHHHH
Q 043643 183 KLPLLKRAVHFIIQNLGSADRLSIVIFSSVA------RRIFPLQRMT--------DSGRENAIRAINTLSSNGGTNIVEG 248 (634)
Q Consensus 183 kl~~~K~al~~li~~L~~~drvsIV~Fs~~a------~~~~pl~~~t--------~~~~~~~~~~I~~l~~~GgT~i~~a 248 (634)
..+.+-.++..++.....+.++-+..|+... ...|||.... +.-.+..++.+.++...|-|++..-
T Consensus 12 ~Y~~ai~~vg~il~~Yd~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~v~l~GPT~fapi 91 (146)
T PF07002_consen 12 PYQQAIRAVGEILQDYDSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPKVQLSGPTNFAPI 91 (146)
T ss_pred HHHHHHHHHHHHHHhhccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhheEECCCccHHHH
Confidence 4566777788888888888899999998753 2236665211 1123556677778889999999999
Q ss_pred HHHHHHHHHh-hccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCCeeEEEEEc
Q 043643 249 LKKGARVLEE-RRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPTFPVHTFGF 327 (634)
Q Consensus 249 L~~A~~~l~~-~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G~ 327 (634)
|+.|.+..+. .........+++||||.-+. -......++. +....++|-.+|+
T Consensus 92 I~~a~~~a~~~~~~~~~Y~iLlIlTDG~i~D-----------------~~~T~~aIv~---------AS~~PlSIIiVGV 145 (146)
T PF07002_consen 92 INHAAKIAKQSNQNGQQYFILLILTDGQITD-----------------MEETIDAIVE---------ASKLPLSIIIVGV 145 (146)
T ss_pred HHHHHHHHhhhccCCceEEEEEEeccccccc-----------------HHHHHHHHHH---------HccCCeEEEEEEe
Confidence 9999999875 22234445688899998662 1223333322 4678899999998
Q ss_pred c
Q 043643 328 G 328 (634)
Q Consensus 328 G 328 (634)
|
T Consensus 146 G 146 (146)
T PF07002_consen 146 G 146 (146)
T ss_pred C
Confidence 7
No 141
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.088 Score=55.14 Aligned_cols=104 Identities=23% Similarity=0.247 Sum_probs=68.6
Q ss_pred CCCCCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcC-CCCeEEEEEeCC--CcEEEEcCcccCHHHHHHHHHHHhcCC
Q 043643 163 ADRAPIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLG-SADRLSIVIFSS--VARRIFPLQRMTDSGRENAIRAINTLS 238 (634)
Q Consensus 163 ~~r~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~-~~drvsIV~Fs~--~a~~~~pl~~~t~~~~~~~~~~I~~l~ 238 (634)
.+....=+++++|+||||.. +-+++|+..-.+---|. .-+++-||.... .++.+-. ...=...
T Consensus 242 ~pes~AVmfclMDvSGSM~~~~KdlAkrFF~lL~~FL~~kYenveivfIrHht~A~EVdE-------------~dFF~~~ 308 (423)
T COG2718 242 KPESNAVMFCLMDVSGSMDQSEKDLAKRFFFLLYLFLRRKYENVEIVFIRHHTEAKEVDE-------------TDFFYSQ 308 (423)
T ss_pred CCccceEEEEEEecCCCcchHHHHHHHHHHHHHHHHHhcccceeEEEEEeecCcceecch-------------hhceeec
Confidence 33445567889999999998 88899986654444443 345555555544 3443321 1111346
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCC-CCcEEEEEeCCCCCCC
Q 043643 239 SNGGTNIVEGLKKGARVLEERRERS-PVASIILLSDGQDTHN 279 (634)
Q Consensus 239 ~~GgT~i~~aL~~A~~~l~~~~~~~-~~~~IILlTDG~~~~g 279 (634)
.+|||-+..||+.+.++++.+-... ..-..+-.|||..-.+
T Consensus 309 esGGTivSSAl~~m~evi~ErYp~aeWNIY~fqaSDGDN~~d 350 (423)
T COG2718 309 ESGGTIVSSALKLMLEVIKERYPPAEWNIYAFQASDGDNWAD 350 (423)
T ss_pred CCCCeEeHHHHHHHHHHHHhhCChhheeeeeeeecCCccccC
Confidence 7899999999999999998865432 2334677999986543
No 142
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.32 E-value=0.00086 Score=68.40 Aligned_cols=50 Identities=30% Similarity=0.612 Sum_probs=40.9
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCCCC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQ 56 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~~ 56 (634)
+|.+|-..|.+ +.....|-|+||..||..++.. +..||.|...+...++.
T Consensus 17 tC~LC~GYliD----ATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl 66 (331)
T KOG2660|consen 17 TCRLCGGYLID----ATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPL 66 (331)
T ss_pred ehhhccceeec----chhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCcccc
Confidence 69999999976 2344789999999999998877 66899999887765533
No 143
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=96.31 E-value=0.03 Score=56.42 Aligned_cols=165 Identities=15% Similarity=0.178 Sum_probs=98.8
Q ss_pred CceEEEEEeCCCCCCc------cHHHH-HHHHHHHHHhcC--CCCeEEEEEeCCCc-EEEEcCcccCHHHHHHHHHHHhc
Q 043643 167 PIDLVTVLDVSGSMSS------KLPLL-KRAVHFIIQNLG--SADRLSIVIFSSVA-RRIFPLQRMTDSGRENAIRAINT 236 (634)
Q Consensus 167 p~dlv~VlD~SgSM~g------kl~~~-K~al~~li~~L~--~~drvsIV~Fs~~a-~~~~pl~~~t~~~~~~~~~~I~~ 236 (634)
-..++++||+|.+|.. +.+.+ |-|..++.+.+. |-..++||..-+.. +.+.. |+ .|-+..+..+.+
T Consensus 87 iRhl~l~lD~Seam~e~Df~p~r~a~vikya~~Fv~eFf~qNPiSqlsii~irdg~a~~~s~---~~-gnpq~hi~~lkS 162 (421)
T COG5151 87 IRHLHLILDVSEAMDESDFLPTRRANVIKYAEGFVPEFFSQNPISQLSIISIRDGCAKYTSS---MD-GNPQAHIGQLKS 162 (421)
T ss_pred hheeEEEEEhhhhhhhhhccchHHHHHHHHHHHHhHHHhccCCchheeeeehhhhHHHHhhh---cC-CCHHHHHHHhhc
Confidence 3579999999999986 34443 345555555443 55678888776543 22222 22 345666677777
Q ss_pred CC-CCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhcccccc
Q 043643 237 LS-SNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREA 315 (634)
Q Consensus 237 l~-~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~ 315 (634)
+. +.|.-.+..||+.|.-.|.....- ..+.|+++--...+.. ..++.+.+.. .
T Consensus 163 ~rd~~gnfSLqNaLEmar~~l~~~~~H-~trEvLiifgS~st~D-----------------Pgdi~~tid~--------L 216 (421)
T COG5151 163 KRDCSGNFSLQNALEMARIELMKNTMH-GTREVLIIFGSTSTRD-----------------PGDIAETIDK--------L 216 (421)
T ss_pred ccccCCChhHHhHHHHhhhhhcccccc-cceEEEEEEeecccCC-----------------CccHHHHHHH--------H
Confidence 64 678888888998884444322211 1222333222222211 1133333321 1
Q ss_pred CCCCeeEEEEEccCCCChHHHHHHHhhc----CCeEEEcCChhhHHHHHHHH
Q 043643 316 GQPTFPVHTFGFGLEHDSEAMHAIADAS----GGTFSFIETLSILQDAFARC 363 (634)
Q Consensus 316 ~~~~i~I~t~G~G~~~d~~~L~~iA~~t----gG~~~~i~~~~~l~~~f~~~ 363 (634)
...+|.|+.+|+.. .-++.++|..+| .|.|+..-|..-+.+.|.+.
T Consensus 217 v~~~IrV~~igL~a--evaicKeickaTn~~~e~~y~v~vde~Hl~el~~E~ 266 (421)
T COG5151 217 VAYNIRVHFIGLCA--EVAICKEICKATNSSTEGRYYVPVDEGHLSELMREL 266 (421)
T ss_pred HhhceEEEEEeehh--HHHHHHHHHhhcCcCcCceeEeeecHHHHHHHHHhc
Confidence 24689999999974 346889998888 78888888887777666553
No 144
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]
Probab=96.14 E-value=0.19 Score=50.11 Aligned_cols=170 Identities=18% Similarity=0.316 Sum_probs=99.3
Q ss_pred CCceEEEEEeCCC---CCC----c--cHHHHHHHHHHHHH-hc--CCCCeEEEEEeCCCcE-EEEc--------------
Q 043643 166 APIDLVTVLDVSG---SMS----S--KLPLLKRAVHFIIQ-NL--GSADRLSIVIFSSVAR-RIFP-------------- 218 (634)
Q Consensus 166 ~p~dlv~VlD~Sg---SM~----g--kl~~~K~al~~li~-~L--~~~drvsIV~Fs~~a~-~~~p-------------- 218 (634)
.|--|+++||.+. -|. + .+..+-+|+--|++ .| ..+.||+++++.+... .+.|
T Consensus 22 ~~slL~vlId~~p~~Wg~~as~~~~~ti~kvl~aivVFlNAHL~~~~~NrvaViA~~~q~~~~lyp~st~~e~~n~~~~~ 101 (314)
T KOG2487|consen 22 NPSLLVVLIDANPCSWGMLASAENWETISKVLNAIVVFLNAHLAFSRNNRVAVIASHSQVDNYLYPSSTRCEDRNASELD 101 (314)
T ss_pred CceeEEEEEecCcchhhhhhhhcCceeHHHHHHHHHHHHHHHHhhccCCcEEEEEecccccceeccccccCCccCccccC
Confidence 5777899999987 332 1 44555555544443 33 4688999999965432 2223
Q ss_pred CcccCHHH-------HHHHHHHHhcC------CCCC-CCcHHHHHHHHHHHHHhhcc----CCCCcEEEEEeCCCCCCCC
Q 043643 219 LQRMTDSG-------RENAIRAINTL------SSNG-GTNIVEGLKKGARVLEERRE----RSPVASIILLSDGQDTHNV 280 (634)
Q Consensus 219 l~~~t~~~-------~~~~~~~I~~l------~~~G-gT~i~~aL~~A~~~l~~~~~----~~~~~~IILlTDG~~~~g~ 280 (634)
+++..... -+.+.+.|..+ ...| -|-+..+|..|+-....... ..-.++|+++|=+.+..
T Consensus 102 ~t~~~~~~y~~~~~~d~tiv~ei~~lm~~~~~~~~~~rt~lagals~~L~yi~~~~ke~~~~~lkSRilV~t~t~d~~-- 179 (314)
T KOG2487|consen 102 PTRLVLFDYSEFRTVDDTIVEEIYRLMEHPDKYDVGDRTVLAGALSDALGYINRLHKEEASEKLKSRILVFTLTRDRA-- 179 (314)
T ss_pred chhhhcchhhhhcccchHHHHHHHHHHhCccccccccceeeccchhhccchHhhhhhhhhhhhhhceEEEEEechHHH--
Confidence 11100000 01222222222 1112 56667777777665533221 12245688888766542
Q ss_pred CCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCCeeEEEEEccCCCChHHHHHHHhhcCCeEEEcCChhhHHHHH
Q 043643 281 LRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPTFPVHTFGFGLEHDSEAMHAIADASGGTFSFIETLSILQDAF 360 (634)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f 360 (634)
..|..++. .|- .+.+.+|+|.++-+|.+ ..+|++-++.|||.|..++.++.|-..+
T Consensus 180 -----------------~qyi~~MN-ciF----aAqKq~I~Idv~~l~~~--s~~LqQa~D~TGG~YL~v~~~~gLLqyL 235 (314)
T KOG2487|consen 180 -----------------LQYIPYMN-CIF----AAQKQNIPIDVVSLGGD--SGFLQQACDITGGDYLHVEKPDGLLQYL 235 (314)
T ss_pred -----------------hhhhhHHH-HHH----HHHhcCceeEEEEecCC--chHHHHHHhhcCCeeEecCCcchHHHHH
Confidence 12332222 122 24678999999999976 7899999999999999999987765444
Q ss_pred H
Q 043643 361 A 361 (634)
Q Consensus 361 ~ 361 (634)
.
T Consensus 236 l 236 (314)
T KOG2487|consen 236 L 236 (314)
T ss_pred H
Confidence 3
No 145
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.0024 Score=64.15 Aligned_cols=42 Identities=26% Similarity=0.566 Sum_probs=36.3
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~ 49 (634)
.|-||...|.. |+...|+|.||..|-..-.+. ...|++|.+.
T Consensus 243 ~c~icr~~f~~-----pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~ 284 (313)
T KOG1813|consen 243 KCFICRKYFYR-----PVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQ 284 (313)
T ss_pred ccccccccccc-----chhhcCCceeehhhhcccccc-CCcceecccc
Confidence 59999999988 899999999999998876665 4579999765
No 146
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.0032 Score=71.15 Aligned_cols=36 Identities=22% Similarity=0.588 Sum_probs=29.7
Q ss_pred EecCCCCccchhhHHHHHhcCCCcCcccccccccCC
Q 043643 19 FTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVP 54 (634)
Q Consensus 19 ~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p 54 (634)
+...|+|.||..|+......+...||.|.+.|..-.
T Consensus 657 vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 657 VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 446799999999999988766778999998876433
No 147
>PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes part of the Sec23/24 beta-barrel domain, which is formed from approximately 180 residues from three segments of the polypeptide. The strands of the barrel are oriented roughly parallel to the membrane such that one end of the barrel forms part of the inner surface of the coat and the other end part of the membrane-distal surface. The barrel is constructed from two opposed sheets: a six-stranded beta sheet facing partly towards the zinc finger domain and partly towards the solvent, and a five-stranded beta sheet facing the helical domain.; PDB: 3EFO_B 3EG9_B 1PD0_A 1PD1_A 1M2V_B 1PCX_A 3EH2_C 3EGD_A 2NUP_A 3EGX_A ....
Probab=95.89 E-value=0.071 Score=45.67 Aligned_cols=89 Identities=16% Similarity=0.210 Sum_probs=59.9
Q ss_pred eeeeEEEEEecCCCeEEEEecCCCCCcc-----cccCCceeEEEcCCccCCcEEEEEEEEEcCCCCCCCCCCCCccceEE
Q 043643 372 SQDVKLTIRSKSAGVRIGSIPSGRYNSE-----VLDEGQQAVIDIGNLYADEEKEFMVYLSIPVSSAEGEQRPECTALLD 446 (634)
Q Consensus 372 a~~~~l~v~~~~~~v~i~~v~~~~~~~~-----~~~~~~~~~i~lg~l~~~e~r~~lv~l~~p~~~~~~~~~~~~~~l~~ 446 (634)
+.+..++|++ ++|+.|..+....+... ..+.+....+.++.|..+..-.|.+++.-+..... ...+|
T Consensus 1 g~~~~l~vr~-S~gl~v~~~~G~~~~~~~~s~~~~g~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~-------~~~iQ 72 (96)
T PF08033_consen 1 GFNAVLRVRC-SKGLKVSGVIGPCFNRSSVSDNEIGEGDTTRWKLPSLDPDTSFAFEFEIDEDLPNGS-------QAYIQ 72 (96)
T ss_dssp EEEEEEEEEE--TTEEEEEEESSSEESSTBESSECSBSSCSEEEEEEEETT--EEEEEEESSBTBTTS-------EEEEE
T ss_pred CceEEEEEEE-CCCeEEEEEEcCccccccccceeeccCCccEEEecccCCCCEEEEEEEECCCCCCCC-------eEEEE
Confidence 3578899997 79999999863332221 11112334599999999998888888853322222 78899
Q ss_pred EEEEEecCCCCceeeeecceeE
Q 043643 447 VFCTHKDSASMEIHQVEGEKVE 468 (634)
Q Consensus 447 v~~~Y~~~~~~~~~~~~~~~~~ 468 (634)
+.+.|+++.+.+.++|.+..+.
T Consensus 73 ~~~~Yt~~~G~r~iRV~T~~l~ 94 (96)
T PF08033_consen 73 FALLYTDSNGERRIRVTTLSLP 94 (96)
T ss_dssp EEEEEEETTSEEEEEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEEeeccc
Confidence 9999999988888888755443
No 148
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.87 E-value=0.016 Score=58.71 Aligned_cols=91 Identities=24% Similarity=0.495 Sum_probs=61.5
Q ss_pred eEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHh-cCCCCCCCcHH
Q 043643 169 DLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAIN-TLSSNGGTNIV 246 (634)
Q Consensus 169 dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~-~l~~~GgT~i~ 246 (634)
-+++++|+||||.. .++.+-.-+..++. .++-++.||.-+..+..-..+++ ++. ++ .+..+|||++.
T Consensus 263 ~i~vaVDtSGS~~d~ei~a~~~Ei~~Il~--~~~~eltli~~D~~v~~~~~~r~----g~~-----~~~~~~ggG~Tdf~ 331 (396)
T COG3864 263 KIVVAVDTSGSMTDAEIDAAMTEIFDILK--NKNYELTLIECDNIVRRMYRVRK----GRD-----MKKKLDGGGGTDFS 331 (396)
T ss_pred heEEEEecCCCccHHHHHHHHHHHHHHHh--CCCcEEEEEEecchhhhhhccCC----ccc-----CCcccCCCCCcccc
Confidence 48999999999987 66655555555542 36889999999988876655552 111 11 24566789998
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEeCCCCC
Q 043643 247 EGLKKGARVLEERRERSPVASIILLSDGQDT 277 (634)
Q Consensus 247 ~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~ 277 (634)
.++.. +++.. +....|.+|||.-.
T Consensus 332 Pvfey----lek~~---~~~~lIyfTDG~gd 355 (396)
T COG3864 332 PVFEY----LEKNR---MECFLIYFTDGMGD 355 (396)
T ss_pred HHHHH----HHhhc---ccceEEEEccCCCC
Confidence 87765 33322 12568999999855
No 149
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=95.80 E-value=0.0036 Score=67.74 Aligned_cols=44 Identities=34% Similarity=0.892 Sum_probs=38.5
Q ss_pred CccccccccccCCcceeEe-cCCCCccchhhHHHHHhcCCCcCcccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFT-AECSHSFHFCCIAANVQHGNRICPICRCEWK 51 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~-~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~ 51 (634)
.|+||...+.+ ++. ..|||.||..|+..|... ...||.|+....
T Consensus 23 ~C~~C~~vl~~-----p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 23 LCPICMSVLRD-----PVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELT 67 (391)
T ss_pred cCccccccccC-----CCCCCCCCCcccccccchhhcc-CcCCcccccccc
Confidence 59999999988 676 599999999999999987 778999987643
No 150
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.47 E-value=0.0053 Score=63.57 Aligned_cols=47 Identities=32% Similarity=0.691 Sum_probs=34.6
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHH-hcCCCcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANV-QHGNRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~-~~~~~~CP~Cr~~ 49 (634)
-|..|-+.+...++. .--++|.|.||..|+...+ +.+..+||.||+-
T Consensus 367 ~Cg~CGe~~Glk~e~-LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 367 YCGLCGESIGLKNER-LQALPCSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred hhhhhhhhhcCCccc-ccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 388888887542222 3347899999999999876 4556789999943
No 151
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=95.30 E-value=0.087 Score=59.75 Aligned_cols=110 Identities=19% Similarity=0.236 Sum_probs=68.4
Q ss_pred CCCCceEEEEEeCCCCCCc---cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCc---------------------------
Q 043643 164 DRAPIDLVTVLDVSGSMSS---KLPLLKRAVHFIIQNLGSADRLSIVIFSSVA--------------------------- 213 (634)
Q Consensus 164 ~r~p~dlv~VlD~SgSM~g---kl~~~K~al~~li~~L~~~drvsIV~Fs~~a--------------------------- 213 (634)
.--|+||++++|.|.||.. +|..+=..+..-+..|..+-|+|.-.|-+.+
T Consensus 129 ~~yPVDLYyLMDlS~SM~DDl~~l~~LG~~L~~~m~~lT~nfrlGFGSFVDK~v~P~i~~~pekl~npc~~~~~C~ppfg 208 (783)
T KOG1226|consen 129 EDYPVDLYYLMDLSYSMKDDLENLKSLGTDLAREMRKLTSNFRLGFGSFVDKTVSPYISTTPEKLRNPCPNYKNCAPPFG 208 (783)
T ss_pred cCCCeeEEEEeecchhhhhhHHHHHHHHHHHHHHHHHHhccCCccccchhccccccccccCcHHhcCCCCCcccCCCCcc
Confidence 4569999999999999998 5555555666777777888888877776543
Q ss_pred -EEEEcCcccCHHHHHHHHHHHhcCCCCCCCcHH-HHHHHHHHHH---HhhccCC-CCcEEEEEeCCCCC
Q 043643 214 -RRIFPLQRMTDSGRENAIRAINTLSSNGGTNIV-EGLKKGARVL---EERRERS-PVASIILLSDGQDT 277 (634)
Q Consensus 214 -~~~~pl~~~t~~~~~~~~~~I~~l~~~GgT~i~-~aL~~A~~~l---~~~~~~~-~~~~IILlTDG~~~ 277 (634)
+.+++|| .+.+.+.+.|.+-+-.|.-+-- .|+.+-++.+ +.-.+++ ..+.+||.||....
T Consensus 209 fkhvLsLT----~~~~~F~~~V~~q~ISgNlDaPEGGfDAimQaavC~~~IGWR~~a~~lLVF~td~~~H 274 (783)
T KOG1226|consen 209 FKHVLSLT----NDAEEFNEEVGKQRISGNLDAPEGGFDAIMQAAVCTEKIGWRNDATRLLVFSTDAGFH 274 (783)
T ss_pred cceeeecC----CChHHHHHHHhhceeccCCCCCCchHHHHHhhhhccccccccccceeEEEEEcCccee
Confidence 2233455 4567777788765444432221 1233333322 2333455 34557777887644
No 152
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.11 E-value=0.011 Score=59.16 Aligned_cols=43 Identities=33% Similarity=0.726 Sum_probs=34.6
Q ss_pred CccccccccccCCcceeE-ecCCCCccchhhHHHHHhcCCCcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIF-TAECSHSFHFCCIAANVQHGNRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~-~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~ 49 (634)
.|+.|...+.. ++ +..|+|.||..||...+-.....||.|..+
T Consensus 276 kCplc~~Llrn-----p~kT~cC~~~fc~eci~~al~dsDf~CpnC~rk 319 (427)
T COG5222 276 KCPLCHCLLRN-----PMKTPCCGHTFCDECIGTALLDSDFKCPNCSRK 319 (427)
T ss_pred cCcchhhhhhC-----cccCccccchHHHHHHhhhhhhccccCCCcccc
Confidence 59999999876 44 357999999999998665546789999764
No 153
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=94.79 E-value=0.016 Score=68.47 Aligned_cols=54 Identities=26% Similarity=0.661 Sum_probs=36.6
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHhc---------CCCcCcccccccccCCCC
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQH---------GNRICPICRCEWKDVPFQ 56 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~---------~~~~CP~Cr~~~~~~p~~ 56 (634)
|.|-||+..--. ..+.+.+.|+|.||++|...-+.. +-..||+|..++...-+.
T Consensus 3487 DmCmICFTE~L~--AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~Lk 3549 (3738)
T KOG1428|consen 3487 DMCMICFTEALS--AAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVLK 3549 (3738)
T ss_pred ceEEEEehhhhC--CCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHHHH
Confidence 568888865432 233566899999999998764421 122699999887655433
No 154
>PHA03096 p28-like protein; Provisional
Probab=94.57 E-value=0.017 Score=59.42 Aligned_cols=49 Identities=24% Similarity=0.379 Sum_probs=33.3
Q ss_pred CCccccccccccC---CcceeEecCCCCccchhhHHHHHhc--CCCcCcccccc
Q 043643 1 KTCPICLGSLRRG---QGVAIFTAECSHSFHFCCIAANVQH--GNRICPICRCE 49 (634)
Q Consensus 1 ~~C~ICl~~~~~~---~~~~~~~~~C~H~Fh~~Ci~~w~~~--~~~~CP~Cr~~ 49 (634)
..|.||++..... +..--....|.|.||..|+..|... ....||.||.-
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 3699999987642 1122334689999999999999852 23356666543
No 155
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.18 E-value=0.024 Score=57.70 Aligned_cols=53 Identities=25% Similarity=0.582 Sum_probs=37.8
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCC
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVP 54 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p 54 (634)
|-||.|++.+...+. --+..+||...|..|...-.+.-+..||-||..+.+..
T Consensus 15 d~cplcie~mditdk-nf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 15 DYCPLCIEPMDITDK-NFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccCcccccccccccC-CcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 569999999865322 24456899988888876544433557999999876644
No 156
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.14 E-value=0.03 Score=58.43 Aligned_cols=49 Identities=20% Similarity=0.478 Sum_probs=41.3
Q ss_pred CccccccccccCC-cceeEecCCCCccchhhHHHHHhcCCCcCccccccc
Q 043643 2 TCPICLGSLRRGQ-GVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEW 50 (634)
Q Consensus 2 ~C~ICl~~~~~~~-~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~ 50 (634)
.|-||-++|..+. ...|..+.|||.||..|+..........||.||..+
T Consensus 5 ~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 5 ECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred ceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 6999999998763 345777889999999999988777677899999986
No 157
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=93.90 E-value=0.025 Score=50.78 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=26.5
Q ss_pred CccccccccccCCcceeEecCCC------CccchhhHHHHHh
Q 043643 2 TCPICLGSLRRGQGVAIFTAECS------HSFHFCCIAANVQ 37 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~------H~Fh~~Ci~~w~~ 37 (634)
+|.||++.+..++|..+++ |+ |.||..|+.+|.+
T Consensus 28 EC~IC~~~I~~~~GvV~vt--~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 28 ECQICFDRIDNNDGVVYVT--DGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred eehhhhhhhhcCCCEEEEe--cCCeehHHHHHHHHHHHHHHh
Confidence 5999999998755554443 54 7899999999953
No 158
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.80 E-value=0.056 Score=55.30 Aligned_cols=51 Identities=16% Similarity=0.453 Sum_probs=39.4
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCCC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVPF 55 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~ 55 (634)
.|||+...|. +.....+..+|||.|+..|+.... ....||+|-.+|.....
T Consensus 115 ~CPvt~~~~~-~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~Di 165 (260)
T PF04641_consen 115 ICPVTGKEFN-GKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDI 165 (260)
T ss_pred ECCCCCcccC-CceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCE
Confidence 4999999993 344556668999999999998863 24479999999876543
No 159
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.62 E-value=0.028 Score=64.07 Aligned_cols=40 Identities=33% Similarity=0.764 Sum_probs=31.2
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~ 49 (634)
.|..|--.+.- +.+--.|||.||.+|+. .+...||.|+..
T Consensus 842 kCs~C~~~Ldl----P~VhF~CgHsyHqhC~e----~~~~~CP~C~~e 881 (933)
T KOG2114|consen 842 KCSACEGTLDL----PFVHFLCGHSYHQHCLE----DKEDKCPKCLPE 881 (933)
T ss_pred eecccCCcccc----ceeeeecccHHHHHhhc----cCcccCCccchh
Confidence 59999888854 34557899999999997 335579999863
No 160
>PHA02862 5L protein; Provisional
Probab=93.48 E-value=0.044 Score=49.42 Aligned_cols=50 Identities=16% Similarity=0.409 Sum_probs=35.1
Q ss_pred CCccccccccccCCcceeEecCCC-----CccchhhHHHHHhc-CCCcCcccccccccCCCC
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECS-----HSFHFCCIAANVQH-GNRICPICRCEWKDVPFQ 56 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~w~~~-~~~~CP~Cr~~~~~~p~~ 56 (634)
+.|=||++.-.+ . ..+|. ..-|..|+.+|.+. ++..||+|+.++.-.+..
T Consensus 3 diCWIC~~~~~e--~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~y 58 (156)
T PHA02862 3 DICWICNDVCDE--R----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKTY 58 (156)
T ss_pred CEEEEecCcCCC--C----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEcc
Confidence 468999997433 1 23453 35799999999973 455799999987654433
No 161
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.47 E-value=0.068 Score=52.39 Aligned_cols=53 Identities=17% Similarity=0.303 Sum_probs=42.4
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCCCC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQ 56 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~~ 56 (634)
.||||.+.+.+.-.++ +..+|||.||..|..+.... ...||+|-.++++..+.
T Consensus 223 iCpvtrd~LtNt~~ca-~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI 275 (303)
T KOG3039|consen 223 ICPVTRDTLTNTTPCA-VLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDII 275 (303)
T ss_pred ecccchhhhcCccceE-EeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceE
Confidence 4999999998754453 44789999999999998876 55899999988775544
No 162
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=93.41 E-value=0.035 Score=63.25 Aligned_cols=52 Identities=31% Similarity=0.728 Sum_probs=38.3
Q ss_pred CccccccccccCCcceeEe-cCCCCccchhhHHHHHhc------CCCcCcccccccccCCC
Q 043643 2 TCPICLGSLRRGQGVAIFT-AECSHSFHFCCIAANVQH------GNRICPICRCEWKDVPF 55 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~-~~C~H~Fh~~Ci~~w~~~------~~~~CP~Cr~~~~~~p~ 55 (634)
.|.||.+.+.. ...++. ..|-|.||..||..|... ..-.||.|+......|.
T Consensus 193 eCmIC~e~I~~--t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~~~ 251 (950)
T KOG1952|consen 193 ECMICTERIKR--TAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTVPK 251 (950)
T ss_pred EEEEeeeeccc--cCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccCCc
Confidence 59999999976 333432 558899999999999952 12269999976655554
No 163
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=0.058 Score=52.01 Aligned_cols=46 Identities=28% Similarity=0.684 Sum_probs=35.2
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhc-------CCCcCccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQH-------GNRICPICRCEW 50 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~-------~~~~CP~Cr~~~ 50 (634)
.|..|--.+..|+. +.+.|-|.||..|+..|... ....||.|..++
T Consensus 52 NC~LC~t~La~gdt---~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 52 NCRLCNTPLASGDT---TRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCceeCCccccCcc---eeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 48889888877543 44679999999999999841 234799998764
No 164
>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]
Probab=93.12 E-value=0.59 Score=51.31 Aligned_cols=75 Identities=25% Similarity=0.294 Sum_probs=53.6
Q ss_pred CceEEEEEeCCCCCCc------cHHHHHHHHH-HHHHhcCCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCCC
Q 043643 167 PIDLVTVLDVSGSMSS------KLPLLKRAVH-FIIQNLGSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLSS 239 (634)
Q Consensus 167 p~dlv~VlD~SgSM~g------kl~~~K~al~-~li~~L~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~~ 239 (634)
..++++++|.|.||.. +++.+-.++. .....+..+|++++..|+......++... .......++..+..+.+
T Consensus 224 ~~~v~l~lD~~~~m~~~~~~~~~~e~av~~a~~la~~~l~~gd~vg~~~~~~~~~~~~~p~~-G~~~l~~~l~~l~~~~~ 302 (416)
T COG1721 224 GRTVVLVLDASRSMLFGSGVASKFEEAVRAAASLAYAALKNGDRVGLLIFGGGGPKWIPPSR-GRRHLARILKALALLRP 302 (416)
T ss_pred CceEEEEEeCCccccCCCCCccHHHHHHHHHHHHHHHHHhCCCeeEEEEECCCcceeeCCCc-chHHHHHHHHHhhccCC
Confidence 7899999999999993 7777766554 44456678999999999988777776652 22234455555555665
Q ss_pred CCC
Q 043643 240 NGG 242 (634)
Q Consensus 240 ~Gg 242 (634)
.+.
T Consensus 303 ~~~ 305 (416)
T COG1721 303 APE 305 (416)
T ss_pred CCc
Confidence 554
No 165
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.92 E-value=0.045 Score=62.91 Aligned_cols=33 Identities=27% Similarity=0.611 Sum_probs=26.8
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHH
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANV 36 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~ 36 (634)
|+|.+|...+.. .+-+..+|||.||..|+.+..
T Consensus 818 d~C~~C~~~ll~---~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 818 DSCDHCGRPLLI---KPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred cchHHhcchhhc---CcceeeeccchHHHHHHHHHH
Confidence 579999998865 234568999999999998865
No 166
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=92.91 E-value=0.08 Score=38.96 Aligned_cols=41 Identities=32% Similarity=0.764 Sum_probs=26.6
Q ss_pred ccccccccccCCcceeEecCCCC-----ccchhhHHHHHh-cCCCcCccc
Q 043643 3 CPICLGSLRRGQGVAIFTAECSH-----SFHFCCIAANVQ-HGNRICPIC 46 (634)
Q Consensus 3 C~ICl~~~~~~~~~~~~~~~C~H-----~Fh~~Ci~~w~~-~~~~~CP~C 46 (634)
|-||++.-.... ++..+|.- ..|..|+..|+. .++..|++|
T Consensus 1 CrIC~~~~~~~~---~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE---PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS----EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC---ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679999876522 56677753 569999999996 445679988
No 167
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=92.81 E-value=0.078 Score=48.90 Aligned_cols=50 Identities=22% Similarity=0.433 Sum_probs=33.7
Q ss_pred CCccccccccccCCcceeEecCCCC---ccchhhHHHHHh-cCCCcCcccccccccCC
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSH---SFHFCCIAANVQ-HGNRICPICRCEWKDVP 54 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H---~Fh~~Ci~~w~~-~~~~~CP~Cr~~~~~~p 54 (634)
+.|=||.+.-.. . ...-.|.. .-|..|+.+|.. .+...|+.|+.++.-..
T Consensus 9 ~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~ 62 (162)
T PHA02825 9 KCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKK 62 (162)
T ss_pred CeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEE
Confidence 368899887432 1 11123444 449999999996 44667999999876543
No 168
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=0.095 Score=52.86 Aligned_cols=56 Identities=21% Similarity=0.530 Sum_probs=42.0
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCCCC
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQ 56 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~~ 56 (634)
+.||+|....--.........+|+|..|-.|+..-...+...||.|...++...|.
T Consensus 1 ~~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr 56 (300)
T KOG3800|consen 1 QACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFR 56 (300)
T ss_pred CCCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccc
Confidence 46999988654333444555699999999999998877777899998766554444
No 169
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.57 E-value=0.065 Score=55.02 Aligned_cols=46 Identities=28% Similarity=0.638 Sum_probs=36.4
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
+.||||.-.--. .+-.+|+|.-|..||.+++-. .+.|=.|+.....
T Consensus 423 ~lCpICyA~pi~-----Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 423 NLCPICYAGPIN-----AVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVID 468 (489)
T ss_pred ccCcceecccch-----hhccCCCCchHHHHHHHHHhc-CCeeeEecceeee
Confidence 469999875433 355799999999999998876 5689999987554
No 170
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=92.13 E-value=0.082 Score=53.72 Aligned_cols=45 Identities=31% Similarity=0.614 Sum_probs=37.3
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRC 48 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~ 48 (634)
.||||.+.+..+... +..++|||.-|..|+......+ .+||+|.+
T Consensus 160 ncPic~e~l~~s~~~-~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 160 NCPICKEYLFLSFED-AGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred CCchhHHHhcccccc-CCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 489999988775444 4458999999999999988776 89999987
No 171
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.01 E-value=0.053 Score=62.43 Aligned_cols=49 Identities=33% Similarity=0.759 Sum_probs=37.8
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh-cCCCcCcccccccccCCCC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ-HGNRICPICRCEWKDVPFQ 56 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~-~~~~~CP~Cr~~~~~~p~~ 56 (634)
.|.||++ ... ++...|+|.||..|+..... .....||.||....+..+.
T Consensus 456 ~c~ic~~-~~~-----~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~ 505 (674)
T KOG1001|consen 456 WCHICCD-LDS-----FFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLL 505 (674)
T ss_pred ccccccc-ccc-----ceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHh
Confidence 6999999 433 66678999999999998654 3344699999887765544
No 172
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=91.88 E-value=0.14 Score=47.20 Aligned_cols=34 Identities=29% Similarity=0.768 Sum_probs=23.2
Q ss_pred CccccccccccC---------CcceeEecCCCCcc-chhhHHHHHh
Q 043643 2 TCPICLGSLRRG---------QGVAIFTAECSHSF-HFCCIAANVQ 37 (634)
Q Consensus 2 ~C~ICl~~~~~~---------~~~~~~~~~C~H~F-h~~Ci~~w~~ 37 (634)
+|||||+.=-++ .|+.|+. |+-+| |..|+.++.+
T Consensus 4 ~CpICme~PHNAVLLlCSS~~kgcRpym--c~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 4 TCPICMEHPHNAVLLLCSSHEKGCRPYM--CDTSYRHSNCLDQFKK 47 (162)
T ss_pred cCceeccCCCceEEEEeccccCCccccc--cCCccchhHHHHHHHH
Confidence 699999965331 3455554 77655 7789998764
No 173
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.87 E-value=0.1 Score=53.46 Aligned_cols=51 Identities=31% Similarity=0.593 Sum_probs=38.4
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh-cCCCcCcccccccccCCCCC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ-HGNRICPICRCEWKDVPFQA 57 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~-~~~~~CP~Cr~~~~~~p~~~ 57 (634)
.|-||-+.+.- ....+|+|..|..|-.+.-. -..+.||+||..|..+-+-.
T Consensus 63 ~C~ICA~~~TY-----s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~fT~ 114 (493)
T COG5236 63 NCQICAGSTTY-----SARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVVFTA 114 (493)
T ss_pred eeEEecCCceE-----EEeccCCchHHHHHHHHHHHHHhccCCCccccccceEEEec
Confidence 48899887754 55689999999999876432 22457999999998876653
No 174
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.72 E-value=0.065 Score=52.92 Aligned_cols=48 Identities=23% Similarity=0.616 Sum_probs=32.3
Q ss_pred ccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCCCC
Q 043643 3 CPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQ 56 (634)
Q Consensus 3 C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~~ 56 (634)
|..|...-. ...-+.+.|.|.||..|...-. ...||+|++.++-.-+.
T Consensus 6 Cn~C~~~~~---~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l~ 53 (233)
T KOG4739|consen 6 CNKCFRFPS---QDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQLN 53 (233)
T ss_pred eccccccCC---CCceeeeechhhhhhhhcccCC---ccccccccceeeeeecc
Confidence 555554322 3446678899999999986422 22899999986654444
No 175
>KOG4465 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.15 E-value=0.5 Score=48.96 Aligned_cols=112 Identities=20% Similarity=0.237 Sum_probs=68.7
Q ss_pred CCCCCCCceEEEEEeCCCCCCc-----cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHh
Q 043643 161 NDADRAPIDLVTVLDVSGSMSS-----KLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAIN 235 (634)
Q Consensus 161 ~~~~r~p~dlv~VlD~SgSM~g-----kl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~ 235 (634)
...++.+..+++.+|+|+||.. .|..-..|...-+-.+.....+-.|+|.+.-. .+|++ .+-....+..+++
T Consensus 421 ~na~ptgkr~~laldvs~sm~~rv~~s~ln~reaaa~m~linlhnead~~~vaf~d~lt-e~pft--kd~kigqv~~~~n 497 (598)
T KOG4465|consen 421 KNAEPTGKRFCLALDVSASMNQRVLGSILNAREAAAAMCLINLHNEADSRCVAFCDELT-ECPFT--KDMKIGQVLDAMN 497 (598)
T ss_pred ccCCCCCceEEEEEecchhhhhhhhccccchHHHHhhhheeeeccccceeEEEeccccc-cCCCc--ccccHHHHHHHHh
Confidence 3456677889999999999996 33322222222223455556677899998753 34666 2333456777777
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCC
Q 043643 236 TLSSNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLR 282 (634)
Q Consensus 236 ~l~~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~ 282 (634)
++. -|||+-+-.+..|.+ .. -+....|++||...-.|.-.
T Consensus 498 ni~-~g~tdcglpm~wa~e----nn--lk~dvfii~tdndt~ageih 537 (598)
T KOG4465|consen 498 NID-AGGTDCGLPMIWAQE----NN--LKADVFIIFTDNDTFAGEIH 537 (598)
T ss_pred cCC-CCCCccCCceeehhh----cC--CCccEEEEEecCcccccccC
Confidence 774 466776666555433 11 12345889999887666443
No 176
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.09 E-value=0.21 Score=52.76 Aligned_cols=46 Identities=26% Similarity=0.525 Sum_probs=33.3
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh----cC---CCcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ----HG---NRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~----~~---~~~CP~Cr~~ 49 (634)
.|.||++.... .+....++|+|.||..|...+.. .+ ...||-|.-+
T Consensus 186 ~C~ICf~e~~G--~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 186 DCCICFEEQMG--QHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cceeeehhhcC--cceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 49999998753 34466689999999999998763 22 2357776544
No 177
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=89.88 E-value=0.18 Score=36.32 Aligned_cols=42 Identities=26% Similarity=0.655 Sum_probs=22.7
Q ss_pred ccccccccccCCcceeEecCCCCccchhhHHHHHhcCCC-cCccc
Q 043643 3 CPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNR-ICPIC 46 (634)
Q Consensus 3 C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~-~CP~C 46 (634)
|.+|.+....|... -...|+=.+|..|+..++++... .||.|
T Consensus 1 C~~C~~iv~~G~~C--~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRC--SNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE---SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccC--CCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 77888888764221 12369889999999998865333 69988
No 178
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=89.71 E-value=0.15 Score=38.37 Aligned_cols=31 Identities=19% Similarity=0.450 Sum_probs=24.3
Q ss_pred eEecCCCCccchhhHHHHHhcCCCcCcccccccc
Q 043643 18 IFTAECSHSFHFCCIAANVQHGNRICPICRCEWK 51 (634)
Q Consensus 18 ~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~ 51 (634)
...++|+|..|..|...+- -..||.|.+++.
T Consensus 20 ~~~~pCgH~I~~~~f~~~r---YngCPfC~~~~~ 50 (55)
T PF14447_consen 20 GTVLPCGHLICDNCFPGER---YNGCPFCGTPFE 50 (55)
T ss_pred cccccccceeeccccChhh---ccCCCCCCCccc
Confidence 5678999999999986653 336999988764
No 179
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=88.92 E-value=0.15 Score=49.80 Aligned_cols=57 Identities=23% Similarity=0.559 Sum_probs=42.6
Q ss_pred CccccccccccCCcceeE-ecCCCCccchhhHHHHHhcCCCcCc--ccccccccCCCCCC
Q 043643 2 TCPICLGSLRRGQGVAIF-TAECSHSFHFCCIAANVQHGNRICP--ICRCEWKDVPFQAP 58 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~-~~~C~H~Fh~~Ci~~w~~~~~~~CP--~Cr~~~~~~p~~~~ 58 (634)
.||||..+---.....++ ..+|-|..|-.|+.+-...+...|| -|.+-++...|..+
T Consensus 12 ~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~kf~~q 71 (314)
T COG5220 12 RCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKIKFIKQ 71 (314)
T ss_pred cCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHhccccc
Confidence 799999865432233344 4559999999999998888888999 89887776666543
No 180
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.62 E-value=0.29 Score=51.68 Aligned_cols=46 Identities=20% Similarity=0.396 Sum_probs=38.0
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCC--CcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGN--RICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~--~~CP~Cr~~ 49 (634)
.|||=.+.-.+ +.+|+.+.|||..+..-+.+..+.+. ..||.|-..
T Consensus 336 ~CPVlKeqtsd--eNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 336 ICPVLKEQTSD--ENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred ecccchhhccC--CCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 48887776655 77899999999999999999888776 689999654
No 181
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=87.86 E-value=0.14 Score=57.91 Aligned_cols=43 Identities=28% Similarity=0.826 Sum_probs=35.4
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHH--HHhcCCCcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAA--NVQHGNRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~--w~~~~~~~CP~Cr~~ 49 (634)
+|+||+..+.. +..+.|.|.||..|+.. |.+.....||+|+..
T Consensus 23 Ec~ic~~~~~~-----p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~ 67 (684)
T KOG4362|consen 23 ECPICLEHVKE-----PSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSD 67 (684)
T ss_pred cCCceeEEeec-----cchhhhhHHHHhhhhhceeeccCccccchhhhhh
Confidence 69999999988 78889999999999987 333435679999854
No 182
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=86.84 E-value=1.2 Score=46.05 Aligned_cols=63 Identities=22% Similarity=0.237 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHhh
Q 043643 489 QRSRLLVAETIADAQRMAEVGDLESAQALLAERRSGLLSSAAAQAGDVLCNWLEAELREIRERMA 553 (634)
Q Consensus 489 ~~~r~~a~~~i~~a~~~a~~g~~~~A~~~L~~~~~~l~~s~~~~~~d~~~~~L~~eL~e~~~~~~ 553 (634)
.++|.....+|..|..-|..||+..|.+.|-.+++.|++|.. ..|+-|+.|..-|+.+..-..
T Consensus 367 ~RNraiSSSAIsrAvsdASaGDy~~AiETllTAI~lIKqSrv--~~DdRCrvLissL~dcLhgie 429 (498)
T KOG4849|consen 367 TRNRAISSSAISRAVSDASAGDYKGAIETLLTAIQLIKQSRV--GHDDRCRVLISSLEDCLHGIE 429 (498)
T ss_pred hhcchhhHHHHHHHhcccccccchhHHHHHHHHHHHHHhhcc--ccchHHHHHHHHHHHHHhhhh
Confidence 456667778999999999999999999999999999998765 578999999999988875544
No 183
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.84 E-value=0.25 Score=54.72 Aligned_cols=48 Identities=25% Similarity=0.457 Sum_probs=34.4
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDV 53 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 53 (634)
.|+||+..|... .-.|+.+.|||..|.+|...-. +.+||.=+-.|..+
T Consensus 13 ~c~ic~n~f~~~-~~~Pvsl~cghtic~~c~~~ly---n~scp~~~De~~~~ 60 (861)
T KOG3161|consen 13 LCDICLNLFVVQ-RLEPVSLQCGHTICGHCVQLLY---NASCPTKRDEDSSL 60 (861)
T ss_pred hchHHHHHHHHH-hcCcccccccchHHHHHHHhHh---hccCCCCccccchh
Confidence 599999888652 3347789999999999998755 34799334444443
No 184
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=86.71 E-value=0.24 Score=59.32 Aligned_cols=43 Identities=33% Similarity=0.578 Sum_probs=34.6
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~ 49 (634)
.|.||++.+.. .. ....|||.+|..|+..|... ...||.|+..
T Consensus 1155 ~c~ic~dil~~--~~--~I~~cgh~~c~~c~~~~l~~-~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1155 VCEICLDILRN--QG--GIAGCGHEPCCRCDELWLYA-SSRCPICKSI 1197 (1394)
T ss_pred chHHHHHHHHh--cC--CeeeechhHhhhHHHHHHHH-hccCcchhhh
Confidence 49999999974 22 23469999999999999987 5689999843
No 185
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=86.03 E-value=0.77 Score=37.07 Aligned_cols=51 Identities=25% Similarity=0.652 Sum_probs=23.0
Q ss_pred CccccccccccCCcceeEe--cCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFT--AECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~--~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.|-||-+.+.......+|. -.|+--.|+.|..-=.+.+++.||.|+.+++.
T Consensus 11 iCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 11 ICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred ccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 5999999885433223443 56887889999987667778899999987653
No 186
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.79 E-value=0.6 Score=46.85 Aligned_cols=30 Identities=27% Similarity=0.752 Sum_probs=23.2
Q ss_pred cCCCCccchhhHHHHHh-cCCCcCccccccc
Q 043643 21 AECSHSFHFCCIAANVQ-HGNRICPICRCEW 50 (634)
Q Consensus 21 ~~C~H~Fh~~Ci~~w~~-~~~~~CP~Cr~~~ 50 (634)
.+|+|.||..||..-.. ....+||.|....
T Consensus 256 ~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~ 286 (298)
T KOG2879|consen 256 GKCGHIYCYYCIATSRLWDASFTCPLCGENV 286 (298)
T ss_pred ccccceeehhhhhhhhcchhhcccCccCCCC
Confidence 55999999999988543 2345899998763
No 187
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.51 E-value=0.33 Score=48.09 Aligned_cols=49 Identities=24% Similarity=0.647 Sum_probs=33.9
Q ss_pred CccccccccccCCcceeEecCC-----CCccchhhHHHHHhc---C----CCcCcccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAEC-----SHSFHFCCIAANVQH---G----NRICPICRCEWK 51 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C-----~H~Fh~~Ci~~w~~~---~----~~~CP~Cr~~~~ 51 (634)
.|-||+..=++ ...+.+.-+| .|..|..|+..|... + ...||.|+.++-
T Consensus 22 ~CWiCF~TdeD-n~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 22 CCWICFATDED-NRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred eEEEEeccCcc-cchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 47899887554 2334455566 367899999999942 1 226999999864
No 188
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=82.50 E-value=0.95 Score=40.53 Aligned_cols=51 Identities=22% Similarity=0.423 Sum_probs=35.0
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHH-HHh-cCCCcCcccccccccC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAA-NVQ-HGNRICPICRCEWKDV 53 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~-w~~-~~~~~CP~Cr~~~~~~ 53 (634)
.|.||.|...+..--.|- --||-..|.-|-.. |.- .-...||+|+..|+..
T Consensus 82 eCnIC~etS~ee~FLKPn-eCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 82 ECNICKETSAEERFLKPN-ECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred eccCcccccchhhcCCcc-cccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 599999987652111221 23899999999988 543 2345799999987753
No 189
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=82.00 E-value=0.91 Score=33.00 Aligned_cols=40 Identities=25% Similarity=0.668 Sum_probs=23.0
Q ss_pred ccccccccccCCcceeEecCCC-CccchhhHHHHHhcCCCcCccccccc
Q 043643 3 CPICLGSLRRGQGVAIFTAECS-HSFHFCCIAANVQHGNRICPICRCEW 50 (634)
Q Consensus 3 C~ICl~~~~~~~~~~~~~~~C~-H~Fh~~Ci~~w~~~~~~~CP~Cr~~~ 50 (634)
|--|+-..+. .+ .|+ |..|..|+...+.. ...||+|..++
T Consensus 5 CKsCWf~~k~-----Li--~C~dHYLCl~CLt~ml~~-s~~C~iC~~~L 45 (50)
T PF03854_consen 5 CKSCWFANKG-----LI--KCSDHYLCLNCLTLMLSR-SDRCPICGKPL 45 (50)
T ss_dssp --SS-S--SS-----EE--E-SS-EEEHHHHHHT-SS-SSEETTTTEE-
T ss_pred ChhhhhcCCC-----ee--eecchhHHHHHHHHHhcc-ccCCCcccCcC
Confidence 5667766554 33 365 88999999987765 45799997653
No 190
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.82 E-value=0.89 Score=47.51 Aligned_cols=35 Identities=23% Similarity=0.527 Sum_probs=26.5
Q ss_pred eEecCCCC-ccchhhHHHHHhcCCCcCcccccccccC
Q 043643 18 IFTAECSH-SFHFCCIAANVQHGNRICPICRCEWKDV 53 (634)
Q Consensus 18 ~~~~~C~H-~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 53 (634)
.+.++|.| ..|..|-....-. ...||+||.++.++
T Consensus 303 t~vLPCRHLCLCs~Ca~~Lr~q-~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 303 TVVLPCRHLCLCSGCAKSLRYQ-TNNCPICRQPIEEL 338 (349)
T ss_pred eEEecchhhehhHhHHHHHHHh-hcCCCccccchHhh
Confidence 78899999 5699998775422 22699999987653
No 191
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.74 E-value=0.67 Score=46.53 Aligned_cols=31 Identities=32% Similarity=0.820 Sum_probs=23.9
Q ss_pred CccccccccccCCcceeEecCC----CCccchhhHHHHHh
Q 043643 2 TCPICLGSLRRGQGVAIFTAEC----SHSFHFCCIAANVQ 37 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C----~H~Fh~~Ci~~w~~ 37 (634)
.|.+|.|.+++ .+ | ..| +|.|||.|-....+
T Consensus 270 cCTLC~ERLED--TH--F-VQCPSVp~HKFCFPCSResIK 304 (352)
T KOG3579|consen 270 CCTLCHERLED--TH--F-VQCPSVPSHKFCFPCSRESIK 304 (352)
T ss_pred eehhhhhhhcc--Cc--e-eecCCCcccceecccCHHHHH
Confidence 59999999977 22 1 234 79999999988775
No 192
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.50 E-value=0.87 Score=45.89 Aligned_cols=30 Identities=27% Similarity=0.607 Sum_probs=22.8
Q ss_pred CCCccchhhHHHHHh------------cCCCcCccccccccc
Q 043643 23 CSHSFHFCCIAANVQ------------HGNRICPICRCEWKD 52 (634)
Q Consensus 23 C~H~Fh~~Ci~~w~~------------~~~~~CP~Cr~~~~~ 52 (634)
|.-.+|..|+.+|.. .++.+||.||+++.-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 455678899999973 345689999998764
No 193
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.23 E-value=0.92 Score=49.07 Aligned_cols=45 Identities=29% Similarity=0.651 Sum_probs=35.7
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPIC 46 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~C 46 (634)
..||+|.-.+..++|+--++-.|||.||..|...|..+ +..|..|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~-~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTH-NGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEeeccccchhhcCcchhhC-CccccCc
Confidence 36999999887777777777669999999999999876 4356544
No 194
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=79.78 E-value=0.96 Score=46.03 Aligned_cols=29 Identities=28% Similarity=0.799 Sum_probs=21.8
Q ss_pred ecCCCCccchhhHHHHHhcCCCcCcccccccc
Q 043643 20 TAECSHSFHFCCIAANVQHGNRICPICRCEWK 51 (634)
Q Consensus 20 ~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~ 51 (634)
..+|.|.||.+|-.. ...+.||.|..+..
T Consensus 106 mIPCkHvFCl~CAr~---~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 106 MIPCKHVFCLECARS---DSDKICPLCDDRVQ 134 (389)
T ss_pred ccccchhhhhhhhhc---CccccCcCcccHHH
Confidence 368999999999754 22558999976543
No 195
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=78.56 E-value=1.4 Score=45.89 Aligned_cols=42 Identities=29% Similarity=0.683 Sum_probs=30.1
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWK 51 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~ 51 (634)
+||||.+.+.. +++.-.=||.-|..|-.+- ...||.||.++.
T Consensus 50 eCPvC~~~l~~----Pi~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 50 DCPVCFNPLSP----PIFQCDNGHLACSSCRTKV----SNKCPTCRLPIG 91 (299)
T ss_pred cCchhhccCcc----cceecCCCcEehhhhhhhh----cccCCccccccc
Confidence 69999999976 2443223788888887532 336999998765
No 196
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.51 E-value=0.93 Score=49.01 Aligned_cols=35 Identities=20% Similarity=0.560 Sum_probs=25.5
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ 37 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~ 37 (634)
+|.||.......+.. -....|+|.||..|+.+.+.
T Consensus 148 ~C~iC~~e~~~~~~~-f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 148 ECGICFVEDPEAEDM-FSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred cCccCccccccHhhh-HHHhcccchhhhHHhHHHhh
Confidence 699999544432222 22678999999999998875
No 197
>PLN02189 cellulose synthase
Probab=78.48 E-value=1.7 Score=51.79 Aligned_cols=50 Identities=22% Similarity=0.545 Sum_probs=37.4
Q ss_pred CccccccccccC--CcceeEecCCCCccchhhHHHHHhcCCCcCcccccccc
Q 043643 2 TCPICLGSLRRG--QGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWK 51 (634)
Q Consensus 2 ~C~ICl~~~~~~--~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~ 51 (634)
.|.||-+.+... ++.-+.+-.|+--.|+.|..-=.+.++..||.|+.+++
T Consensus 36 ~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 699999998532 22233446688889999996544567889999999987
No 198
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=78.35 E-value=2 Score=32.04 Aligned_cols=44 Identities=25% Similarity=0.574 Sum_probs=19.2
Q ss_pred CccccccccccCCcceeEecCCCCccchhh---HHHHHhcCCCcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCC---IAANVQHGNRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~C---i~~w~~~~~~~CP~Cr~~ 49 (634)
.|||....+.. +.....|.|.-|++- +....+.+.-.||+|.++
T Consensus 4 ~CPls~~~i~~----P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRI----PVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SS----EEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEe----CccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 58888888865 334477999877653 222223444579999763
No 199
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=78.15 E-value=1.1 Score=50.93 Aligned_cols=52 Identities=10% Similarity=0.107 Sum_probs=33.9
Q ss_pred CCccccccccccCCcceeE--ecCCCCccchhhHHHHHhc-----CCCcCccccccccc
Q 043643 1 KTCPICLGSLRRGQGVAIF--TAECSHSFHFCCIAANVQH-----GNRICPICRCEWKD 52 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~--~~~C~H~Fh~~Ci~~w~~~-----~~~~CP~Cr~~~~~ 52 (634)
++|.||+-.+......... .-.|+|.||..||..|... ....|+.|..-+..
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 5788888887652111111 1359999999999999852 23357888765433
No 200
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=78.11 E-value=3.5 Score=31.19 Aligned_cols=48 Identities=27% Similarity=0.561 Sum_probs=32.9
Q ss_pred CccccccccccCC-cceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCC
Q 043643 2 TCPICLGSLRRGQ-GVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVP 54 (634)
Q Consensus 2 ~C~ICl~~~~~~~-~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p 54 (634)
.|-.|-.++.... +..+.+.+| .||..|....+.. .||.|...+...|
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfEC--TFC~~C~e~~l~~---~CPNCgGelv~RP 55 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFEC--TFCADCAETMLNG---VCPNCGGELVRRP 55 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeC--cccHHHHHHHhcC---cCcCCCCccccCC
Confidence 4677877776644 233434444 7999999887644 7999988766544
No 201
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=76.49 E-value=1 Score=47.79 Aligned_cols=30 Identities=27% Similarity=0.625 Sum_probs=26.4
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHH
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANV 36 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~ 36 (634)
.|+||...|.+ |+.++|+|+.|..|-..-.
T Consensus 6 kc~vc~~f~~e-----piil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 6 KCPVCGSFYRE-----PIILPCSHNLCQACARNIL 35 (699)
T ss_pred cCceehhhccC-----ceEeecccHHHHHHHHhhc
Confidence 59999999988 8889999999999987543
No 202
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=75.72 E-value=1.6 Score=49.82 Aligned_cols=53 Identities=25% Similarity=0.467 Sum_probs=37.4
Q ss_pred CccccccccccCCcceeEecCCCC-----ccchhhHHHHHhc-CCCcCcccccccccCCCCC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSH-----SFHFCCIAANVQH-GNRICPICRCEWKDVPFQA 57 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H-----~Fh~~Ci~~w~~~-~~~~CP~Cr~~~~~~p~~~ 57 (634)
+|-||...=.+ +. |..-+|.. ..|..|+.+|+.+ +...|-+|+.+++-...-+
T Consensus 14 ~CRICr~e~~~--d~-pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~ 72 (1175)
T COG5183 14 SCRICRTEDIR--DD-PLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYK 72 (1175)
T ss_pred hceeecCCCCC--CC-cCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecc
Confidence 69999876433 22 44456654 4699999999974 4557999999887655443
No 203
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.71 E-value=1.7 Score=40.61 Aligned_cols=37 Identities=22% Similarity=0.516 Sum_probs=24.8
Q ss_pred CccccccccccCC--cceeEecCCCCccchhhHHHHHhc
Q 043643 2 TCPICLGSLRRGQ--GVAIFTAECSHSFHFCCIAANVQH 38 (634)
Q Consensus 2 ~C~ICl~~~~~~~--~~~~~~~~C~H~Fh~~Ci~~w~~~ 38 (634)
.|.||...--+|. .+.--...||..||.-|+..|++.
T Consensus 167 ~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRg 205 (234)
T KOG3268|consen 167 ACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRG 205 (234)
T ss_pred cccceeeeecCCccccccccccccCCcHHHHHHHHHHHH
Confidence 4778876544431 111113579999999999999974
No 204
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.94 E-value=0.25 Score=51.69 Aligned_cols=52 Identities=27% Similarity=0.470 Sum_probs=38.7
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCCC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVPF 55 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~ 55 (634)
.|.||.+.++..- ..+-.+-|||.+|..|+..|+.. ...||.|+..+....+
T Consensus 198 sl~I~~~slK~~y-~k~~~~~~g~~~~~~kL~k~L~~-~~kl~~~~rel~~~~~ 249 (465)
T KOG0827|consen 198 SLSICFESLKQNY-DKISAIVCGHIYHHGKLSKWLAT-KRKLPSCRRELPKNGF 249 (465)
T ss_pred hhHhhHHHHHHHH-HHHHHHhhcccchhhHHHHHHHH-HHHhHHHHhhhhhhhH
Confidence 6899999987621 11233569999999999999976 5579999887554443
No 205
>PLN02436 cellulose synthase A
Probab=73.77 E-value=2.7 Score=50.24 Aligned_cols=50 Identities=26% Similarity=0.579 Sum_probs=37.1
Q ss_pred CccccccccccCC--cceeEecCCCCccchhhHHHHHhcCCCcCcccccccc
Q 043643 2 TCPICLGSLRRGQ--GVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWK 51 (634)
Q Consensus 2 ~C~ICl~~~~~~~--~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~ 51 (634)
.|.||-+.+.... +.-+.+-.|+--.|+.|..-=.+.++..||.|+++++
T Consensus 38 iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 38 TCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 6999999974332 2223346688889999996544567889999999987
No 206
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=70.42 E-value=3.8 Score=30.94 Aligned_cols=32 Identities=25% Similarity=0.707 Sum_probs=25.8
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHH
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAA 34 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~ 34 (634)
.|++|-+.|+++ +..++...|+-.+|+.|...
T Consensus 7 ~C~~Cg~~~~~~-dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 7 KCPVCGKKFKDG-DDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cChhhCCcccCC-CCEEECCCCCCcccHHHHhh
Confidence 599999999863 45567789999999999643
No 207
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=67.84 E-value=3.3 Score=42.38 Aligned_cols=46 Identities=22% Similarity=0.353 Sum_probs=33.7
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCC--CcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGN--RICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~--~~CP~Cr~~ 49 (634)
.||+--+.-.+ +.+|+.+.|||..-..-+....+.|. ..||.|...
T Consensus 338 iCPVlKe~~t~--ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 338 ICPVLKELCTD--ENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred eccccHhhhcc--cCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 36665555444 66799999999998888888776554 369999643
No 208
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=67.39 E-value=4.4 Score=48.65 Aligned_cols=50 Identities=22% Similarity=0.546 Sum_probs=37.1
Q ss_pred CccccccccccCC--cceeEecCCCCccchhhHHHHHhcCCCcCcccccccc
Q 043643 2 TCPICLGSLRRGQ--GVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWK 51 (634)
Q Consensus 2 ~C~ICl~~~~~~~--~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~ 51 (634)
.|-||-+.+.-.. +.-+.+-+|+--.|+.|..-=.+.++..||.|+.+++
T Consensus 19 iCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred eeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 6999999875332 2233456788889999995434567889999999987
No 209
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PLN02195 cellulose synthase A
Probab=63.73 E-value=6.1 Score=47.05 Aligned_cols=51 Identities=20% Similarity=0.545 Sum_probs=37.8
Q ss_pred CccccccccccCC-c-ceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQ-G-VAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~-~-~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.|.||-+.+.... + .-+.+-+|+--.|+.|..-=.+.++..||.|+.++++
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCcccc
Confidence 5999999775332 2 2234577998899999954445678899999999983
No 211
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.72 E-value=4.5 Score=40.07 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=27.7
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHH
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANV 36 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~ 36 (634)
|.|..||..+.+ |+..+=||.||+.||..+.
T Consensus 44 dcCsLtLqPc~d-----Pvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 44 DCCSLTLQPCRD-----PVITPDGYLFDREAILEYI 74 (303)
T ss_pred ceeeeecccccC-----CccCCCCeeeeHHHHHHHH
Confidence 579999999988 8888889999999998866
No 212
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=62.44 E-value=4.2 Score=25.91 Aligned_cols=24 Identities=38% Similarity=0.762 Sum_probs=13.5
Q ss_pred CCccccccccccCCcceeEecCCCCcc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSF 27 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~F 27 (634)
++||-|...+.. .+.....|||.|
T Consensus 1 K~CP~C~~~V~~---~~~~Cp~CG~~F 24 (26)
T PF10571_consen 1 KTCPECGAEVPE---SAKFCPHCGYDF 24 (26)
T ss_pred CcCCCCcCCchh---hcCcCCCCCCCC
Confidence 467777776643 122334567666
No 213
>PLN02400 cellulose synthase
Probab=61.71 E-value=5.1 Score=48.19 Aligned_cols=51 Identities=22% Similarity=0.567 Sum_probs=37.0
Q ss_pred CccccccccccCC--cceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQ--GVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~--~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.|-||-+.+.... +.-+.+-+|+---|+.|..-=.+.+++.||.|+.+++.
T Consensus 38 iCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 38 ICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred eeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccc
Confidence 6999999875332 22234567888899999854335678899999999873
No 214
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=60.64 E-value=4 Score=31.49 Aligned_cols=34 Identities=29% Similarity=0.610 Sum_probs=21.8
Q ss_pred cc--ccccccccC--CcceeEec-CCCCccchhhHHHHH
Q 043643 3 CP--ICLGSLRRG--QGVAIFTA-ECSHSFHFCCIAANV 36 (634)
Q Consensus 3 C~--ICl~~~~~~--~~~~~~~~-~C~H~Fh~~Ci~~w~ 36 (634)
|| -|...+... .+...+.- .|+|.||+.|...|.
T Consensus 21 CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~H 59 (64)
T smart00647 21 CPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPWH 59 (64)
T ss_pred CCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcCC
Confidence 55 665554432 13334443 799999999988884
No 215
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=59.09 E-value=7.5 Score=46.63 Aligned_cols=51 Identities=24% Similarity=0.540 Sum_probs=37.5
Q ss_pred CccccccccccCC-c-ceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQ-G-VAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~-~-~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.|.||-+.+.... + .-+.+-+|+--.|+.|..-=.+.++..||.|+.+++.
T Consensus 17 ~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 17 TCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred hhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 5999999875432 2 2234567888899999955445678899999999873
No 216
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.04 E-value=9.5 Score=30.32 Aligned_cols=50 Identities=26% Similarity=0.468 Sum_probs=33.5
Q ss_pred CccccccccccCCcceeE-ecCCCCccchhhHHHHHhcCCCcCcccccccccCCCC
Q 043643 2 TCPICLGSLRRGQGVAIF-TAECSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQ 56 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~-~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~~ 56 (634)
.|--|-.++..+.+.+.+ +.+ |.||..|...-+.. .||.|-..+...|..
T Consensus 7 nCECCDrDLpp~s~dA~ICtfE--cTFCadCae~~l~g---~CPnCGGelv~RP~R 57 (84)
T COG3813 7 NCECCDRDLPPDSTDARICTFE--CTFCADCAENRLHG---LCPNCGGELVARPIR 57 (84)
T ss_pred CCcccCCCCCCCCCceeEEEEe--eehhHhHHHHhhcC---cCCCCCchhhcCcCC
Confidence 366677777655444433 333 58999999865543 799999887666643
No 217
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=58.27 E-value=4.7 Score=42.21 Aligned_cols=50 Identities=26% Similarity=0.639 Sum_probs=34.9
Q ss_pred CccccccccccCCcceeEecCCC-----CccchhhHHHHHh-cCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECS-----HSFHFCCIAANVQ-HGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~w~~-~~~~~CP~Cr~~~~~ 52 (634)
.|-||........+. ++..+|. +..|..|+..|.. +++..|.+|...+..
T Consensus 80 ~cRIc~~~~~~~~~~-~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 80 ICRICHEEDEESNGL-LLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred cEEEEeccccccccc-ccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 488999976543222 4555664 3569999999997 446689999876543
No 218
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=57.00 E-value=3.3 Score=46.66 Aligned_cols=27 Identities=26% Similarity=0.618 Sum_probs=19.9
Q ss_pred ecCCCCccchhhHHHHHhcCCCcCccccccc
Q 043643 20 TAECSHSFHFCCIAANVQHGNRICPICRCEW 50 (634)
Q Consensus 20 ~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~ 50 (634)
...|++.||..|+.. ....||.|-..+
T Consensus 534 C~~C~avfH~~C~~r----~s~~CPrC~R~q 560 (580)
T KOG1829|consen 534 CSTCLAVFHKKCLRR----KSPCCPRCERRQ 560 (580)
T ss_pred HHHHHHHHHHHHHhc----cCCCCCchHHHH
Confidence 467999999999764 243599995543
No 219
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.47 E-value=12 Score=38.40 Aligned_cols=47 Identities=32% Similarity=0.680 Sum_probs=31.8
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
+.|-||...+.- +...-.|.|.||.+|...|...+ ..||.|+.....
T Consensus 106 ~~~~~~~g~l~v----pt~~qg~w~qf~~~~p~~~~~~~-~~~~d~~~~~~p 152 (324)
T KOG0824|consen 106 DICYICYGKLTV----PTRIQGCWHQFCYVCPKSNFAMG-NDCPDCRGKISP 152 (324)
T ss_pred cceeeeeeeEEe----cccccCceeeeeecCCchhhhhh-hccchhhcCcCc
Confidence 356666665532 01123399999999999998763 379999876543
No 220
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=53.09 E-value=7.4 Score=30.47 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=8.7
Q ss_pred ccchhhHHHHHh
Q 043643 26 SFHFCCIAANVQ 37 (634)
Q Consensus 26 ~Fh~~Ci~~w~~ 37 (634)
-||+.|+.+|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 221
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=50.03 E-value=5.4 Score=33.28 Aligned_cols=34 Identities=26% Similarity=0.540 Sum_probs=22.3
Q ss_pred eEecCCCCccchhhHHHHHhcCCCcCcccccccccCCCC
Q 043643 18 IFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQ 56 (634)
Q Consensus 18 ~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~~ 56 (634)
+.+..||-.|-..=| ...+.||.|+..|-+.|-.
T Consensus 59 a~CkkCGfef~~~~i-----k~pSRCP~CKSE~Ie~prF 92 (97)
T COG3357 59 ARCKKCGFEFRDDKI-----KKPSRCPKCKSEWIEEPRF 92 (97)
T ss_pred hhhcccCcccccccc-----CCcccCCcchhhcccCCce
Confidence 445668877754222 1245799999999877643
No 222
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=49.83 E-value=16 Score=41.99 Aligned_cols=44 Identities=20% Similarity=0.419 Sum_probs=31.6
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcc--cccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPI--CRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~--Cr~~ 49 (634)
.|.+|-..+.. .....-.|||.-|..|+..|..+ ...||. |...
T Consensus 781 ~CtVC~~vi~G---~~~~c~~C~H~gH~sh~~sw~~~-~s~ca~~~C~~~ 826 (839)
T KOG0269|consen 781 KCTVCDLVIRG---VDVWCQVCGHGGHDSHLKSWFFK-ASPCAKSICPHL 826 (839)
T ss_pred Cceeecceeee---eEeecccccccccHHHHHHHHhc-CCCCccccCCcc
Confidence 58888887754 22344669999999999999976 445655 5444
No 223
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.64 E-value=14 Score=36.80 Aligned_cols=48 Identities=13% Similarity=0.283 Sum_probs=32.2
Q ss_pred ccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCC
Q 043643 3 CPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVP 54 (634)
Q Consensus 3 C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p 54 (634)
|||---.|.. .-.-.+...|||.|-..-+.... ...|++|.+.+.+..
T Consensus 114 CPvtgleMng-~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 114 CPVTGLEMNG-KYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDD 161 (293)
T ss_pred cccccceecc-eEEEEEEeccceeccHHHHHHhh---hccccccCCcccccC
Confidence 6665555532 22334457899999887776543 458999999887644
No 224
>KOG2327 consensus DNA-binding subunit of a DNA-dependent protein kinase (Ku70 autoantigen) [Replication, recombination and repair]
Probab=49.16 E-value=1.3e+02 Score=34.20 Aligned_cols=109 Identities=17% Similarity=0.297 Sum_probs=64.4
Q ss_pred eEEEEEeCCCCCCc------cHHHHHHHHHHH---HHh---cCCCCeEEEEEeCCC-------cEEEEcCcccCHHHHHH
Q 043643 169 DLVTVLDVSGSMSS------KLPLLKRAVHFI---IQN---LGSADRLSIVIFSSV-------ARRIFPLQRMTDSGREN 229 (634)
Q Consensus 169 dlv~VlD~SgSM~g------kl~~~K~al~~l---i~~---L~~~drvsIV~Fs~~-------a~~~~pl~~~t~~~~~~ 229 (634)
-+.||+|+|.||.+ .+..++.++..+ .-+ .++.+-++++.|+.. ...++|+..........
T Consensus 20 ~ilfvi~~~~s~~~~~~~e~~lspl~~~L~~~~~l~~~~vitn~~~~~~v~~y~~~~~~~~~~~~~l~~l~d~~~~~~~k 99 (602)
T KOG2327|consen 20 AILFVIDVNPSMKAEEPDEFKLSPLKMILDCIDRLCIQLVITNPIDSVGVLFYGTEETEGLENNTLLFPLGDLGQEEVKK 99 (602)
T ss_pred ceEEEEecCHHhhccCcccchhhhHHHHHHHHHHHHhheeecCCCCccceEeecccccccCccceEEeeccccChHHHHH
Confidence 37899999999986 333333333222 111 146777888888754 35667777655444433
Q ss_pred HHHHHhcC--------C--CCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCC
Q 043643 230 AIRAINTL--------S--SNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDT 277 (634)
Q Consensus 230 ~~~~I~~l--------~--~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~ 277 (634)
+.+..... . +.-.+.+..-|....+++.....+...++|+++||-..-
T Consensus 100 ~~~~~e~~~q~~~~~~~~~~~~~s~ls~vl~~c~~~~~~~~~~~~~krv~l~Td~d~P 157 (602)
T KOG2327|consen 100 ILELFEEENQLSAVNFYGGMHQKSDLSNVLNYCKRMVFASQKKLSNKRVFLFTDNDNP 157 (602)
T ss_pred HHHHhhhhhhhhhhhccCcccccccHHHHHHHHHHHHHHHhhhcccceEEEEecCCCc
Confidence 33332221 1 112446777777777766655555666789999998644
No 225
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=49.11 E-value=11 Score=39.27 Aligned_cols=46 Identities=24% Similarity=0.603 Sum_probs=32.2
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~ 49 (634)
.|+||-+.+... ....+..+|++..|..|+..-..+ ...||.||++
T Consensus 251 s~p~~~~~~~~~-d~~~lP~~~~~~~~l~~~~t~~~~-~~~~~~~rk~ 296 (327)
T KOG2068|consen 251 SCPICYEDLDLT-DSNFLPCPCGFRLCLFCHKTISDG-DGRCPGCRKP 296 (327)
T ss_pred CCCCCCCccccc-ccccccccccccchhhhhhccccc-CCCCCccCCc
Confidence 699999987442 222334678888888888765544 5589999954
No 226
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.87 E-value=9.5 Score=42.23 Aligned_cols=32 Identities=28% Similarity=0.589 Sum_probs=26.4
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ 37 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~ 37 (634)
.|.||.+.+.. .+..+.|+|.||..|+...+.
T Consensus 72 ~c~ic~~~~~~----~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 72 QCGICVESYDG----EIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred cCCcccCCCcc----hhhhcCCCcHHHHHHHHHHhh
Confidence 69999998753 256689999999999998775
No 227
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=46.60 E-value=66 Score=27.98 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=25.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Q 043643 498 TIADAQRMAEVGDLESAQALLAERRSGLLS 527 (634)
Q Consensus 498 ~i~~a~~~a~~g~~~~A~~~L~~~~~~l~~ 527 (634)
..-+|+..++.||+++|..+|.++.+.+.+
T Consensus 23 ~~~eAl~~ak~gdf~~A~~~l~eA~~~l~~ 52 (104)
T PRK09591 23 EVHEAFAAMREGNFDLAEQKLNQSNEELLE 52 (104)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 445788889999999999999999988854
No 228
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=46.23 E-value=12 Score=27.41 Aligned_cols=45 Identities=31% Similarity=0.699 Sum_probs=31.2
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh-----cCCCcCccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ-----HGNRICPICRC 48 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~-----~~~~~CP~Cr~ 48 (634)
.|.||.... ..+..+.-..|+..||..|+..-.. ...-.||.|+.
T Consensus 1 ~C~vC~~~~--~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSD--DDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSC--TTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcC--CCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 388999833 2355667788999999999866332 22446888863
No 229
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=46.04 E-value=49 Score=28.78 Aligned_cols=29 Identities=31% Similarity=0.432 Sum_probs=24.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Q 043643 499 IADAQRMAEVGDLESAQALLAERRSGLLS 527 (634)
Q Consensus 499 i~~a~~~a~~g~~~~A~~~L~~~~~~l~~ 527 (634)
+-+|++.++.|++++|..+|+++...|.+
T Consensus 23 ~~eAl~~Ak~g~f~~A~~~i~eA~~~l~e 51 (105)
T COG1447 23 AYEALKAAKEGDFEEAEELIQEANDALNE 51 (105)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 44677888999999999999999888854
No 230
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=45.03 E-value=92 Score=25.08 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=23.2
Q ss_pred EEcCCccCCcEEEEEEEEEcCCCCCCCCCCCCccceEEEEEEEe
Q 043643 409 IDIGNLYADEEKEFMVYLSIPVSSAEGEQRPECTALLDVFCTHK 452 (634)
Q Consensus 409 i~lg~l~~~e~r~~lv~l~~p~~~~~~~~~~~~~~l~~v~~~Y~ 452 (634)
..++.|..|++..+-|.+.+|.....+ ...+.+..+|+
T Consensus 41 ~~~~~l~pG~s~~~~~~V~vp~~a~~G------~y~v~~~a~y~ 78 (78)
T PF10633_consen 41 ASVPSLPPGESVTVTFTVTVPADAAPG------TYTVTVTARYT 78 (78)
T ss_dssp EEE--B-TTSEEEEEEEEEE-TT--SE------EEEEEEEEE--
T ss_pred cccccCCCCCEEEEEEEEECCCCCCCc------eEEEEEEEEeC
Confidence 345589999999999999998765431 45677777774
No 231
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.38 E-value=4.9 Score=35.95 Aligned_cols=46 Identities=28% Similarity=0.614 Sum_probs=21.8
Q ss_pred Cccccccc-cccCCcceeEecCCCCccchhhHHHHHhcCCC---cCcccccc
Q 043643 2 TCPICLGS-LRRGQGVAIFTAECSHSFHFCCIAANVQHGNR---ICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~-~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~---~CP~Cr~~ 49 (634)
+|.||+.. |.+|-++ ...-|.-.||..|-.+.....++ .|-+|+..
T Consensus 67 tC~IC~KTKFADG~GH--~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 67 TCGICHKTKFADGCGH--NCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred chhhhhhcccccccCc--ccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 69999874 3332111 11223334455554332211122 58888764
No 232
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=44.31 E-value=81 Score=27.04 Aligned_cols=30 Identities=30% Similarity=0.405 Sum_probs=25.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Q 043643 498 TIADAQRMAEVGDLESAQALLAERRSGLLS 527 (634)
Q Consensus 498 ~i~~a~~~a~~g~~~~A~~~L~~~~~~l~~ 527 (634)
..-+|+..++.|++++|..+|.++...+.+
T Consensus 18 ~~~eAl~~a~~g~fe~A~~~l~ea~~~l~~ 47 (97)
T cd00215 18 KALEALKAAKEGDFAEAEELLEEANDSLNE 47 (97)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345778888999999999999999988854
No 233
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=44.16 E-value=3.6 Score=31.72 Aligned_cols=33 Identities=27% Similarity=0.598 Sum_probs=16.5
Q ss_pred ccc--cccccccCCccee--Ee-cCCCCccchhhHHHH
Q 043643 3 CPI--CLGSLRRGQGVAI--FT-AECSHSFHFCCIAAN 35 (634)
Q Consensus 3 C~I--Cl~~~~~~~~~~~--~~-~~C~H~Fh~~Ci~~w 35 (634)
||- |-..+....+... ++ ..|++.||+.|-..|
T Consensus 21 Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 21 CPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp -TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred CCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 544 6665543332222 33 448888888887766
No 234
>KOG2326 consensus DNA-binding subunit of a DNA-dependent protein kinase (Ku80 autoantigen) [Replication, recombination and repair]
Probab=43.97 E-value=3.9e+02 Score=30.49 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=33.9
Q ss_pred EEEEEeCCCCCCc-------cHHHHHHHHHHHHHh-c---CCCCeEEEEEeCCCc
Q 043643 170 LVTVLDVSGSMSS-------KLPLLKRAVHFIIQN-L---GSADRLSIVIFSSVA 213 (634)
Q Consensus 170 lv~VlD~SgSM~g-------kl~~~K~al~~li~~-L---~~~drvsIV~Fs~~a 213 (634)
.+|++|++.+|.. .++.++.++..++.+ + +..|-+++|.|+-+.
T Consensus 7 ttfilDvG~~Ms~~~~~~~S~fE~a~~y~~~~lsrK~fa~rktD~is~vlyncD~ 61 (669)
T KOG2326|consen 7 TTFILDVGPSMSKNNETGKSNFEKAMAYLEYTLSRKSFASRKTDWISCVLYNCDV 61 (669)
T ss_pred eEEEEecCccccccCCCccccHHHHHHHHHHHHHHHHhhccCCceEEEEEecCCC
Confidence 5667799999984 688888888777643 2 257899999998764
No 235
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=43.66 E-value=3.4e+02 Score=35.71 Aligned_cols=108 Identities=14% Similarity=0.263 Sum_probs=61.1
Q ss_pred CceEEEEEeCCCCCCc--cHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCcEEEEcCcc-cCHHHHHHHHHHHhcC-CCC
Q 043643 167 PIDLVTVLDVSGSMSS--KLPLLKRAVHFIIQNLG--SADRLSIVIFSSVARRIFPLQR-MTDSGRENAIRAINTL-SSN 240 (634)
Q Consensus 167 p~dlv~VlD~SgSM~g--kl~~~K~al~~li~~L~--~~drvsIV~Fs~~a~~~~pl~~-~t~~~~~~~~~~I~~l-~~~ 240 (634)
...+.+-||-|.||.. --.++-+.+..+-..|. .--.++|+-|+...+.+-|+.. .+.. .-.+..... -..
T Consensus 4392 ~yqvmisiddsksmses~~~~la~etl~lvtkals~le~g~iav~kfge~~~~lh~fdkqfs~e---sg~~~f~~f~feq 4468 (4600)
T COG5271 4392 TYQVMISIDDSKSMSESGSTVLALETLALVTKALSLLEVGQIAVMKFGEQPELLHPFDKQFSSE---SGVQMFSHFTFEQ 4468 (4600)
T ss_pred eeEEEEEecccccccccCceeeehHHHHHHHHHHHHHhhccEEEEecCCChhhhCchhhhhcch---HHHHHHHhhchhc
Confidence 4789999999999986 11112222222222221 3568999999999998888752 1111 112222222 123
Q ss_pred CCCcHHHHHHHHHHHHHhhc---cCCCCcEEEEEeCCCCC
Q 043643 241 GGTNIVEGLKKGARVLEERR---ERSPVASIILLSDGQDT 277 (634)
Q Consensus 241 GgT~i~~aL~~A~~~l~~~~---~~~~~~~IILlTDG~~~ 277 (634)
..||.-.-.....+.+...+ .......=|++|||.-.
T Consensus 4469 s~tnv~~l~~~s~k~f~~a~t~~h~d~~qleiiisdgice 4508 (4600)
T COG5271 4469 SNTNVLALADASMKCFNYANTASHHDIRQLEIIISDGICE 4508 (4600)
T ss_pred ccccHHHHHHHHHHHHHHhhhhcccchheeEEEeecCccc
Confidence 56776655555555554322 12223346899999865
No 236
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=43.57 E-value=15 Score=37.12 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=26.4
Q ss_pred ccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcc
Q 043643 3 CPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPI 45 (634)
Q Consensus 3 C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~ 45 (634)
|+||++....|....-..-.=+=.=|+.|+.+|.-..+..||.
T Consensus 33 ChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~pr 75 (285)
T PF06937_consen 33 CHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCPR 75 (285)
T ss_pred cceeeccccccCccccccccccccchHHHHHHHHHHHcCCCCc
Confidence 8888888766432221111111134689999998766778983
No 237
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=43.22 E-value=9.4 Score=28.75 Aligned_cols=36 Identities=31% Similarity=0.673 Sum_probs=20.6
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh-cCCCcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ-HGNRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~-~~~~~CP~Cr~~ 49 (634)
.||.|-..+.. ..+..+|...... .....||+|...
T Consensus 4 ~CP~C~~~~~~------------~~L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 4 TCPYCGKGFSE------------SSLVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CCCCCCCccCH------------HHHHHHHHhHCcCCCCCccCCCchhh
Confidence 58888875432 1233445554433 234579999864
No 238
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=42.23 E-value=90 Score=26.86 Aligned_cols=30 Identities=27% Similarity=0.343 Sum_probs=25.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Q 043643 498 TIADAQRMAEVGDLESAQALLAERRSGLLS 527 (634)
Q Consensus 498 ~i~~a~~~a~~g~~~~A~~~L~~~~~~l~~ 527 (634)
..-+|++.++.||+++|..+|.++...+.+
T Consensus 20 ~~~eAl~~a~~gdfe~A~~~l~eA~~~l~~ 49 (99)
T TIGR00823 20 KALEALKAAKAGDFAKARALVEQAGMCLNE 49 (99)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345778889999999999999999988854
No 239
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=42.17 E-value=1.8e+02 Score=23.26 Aligned_cols=60 Identities=23% Similarity=0.224 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHhh
Q 043643 494 LVAETIADAQRMAEVGDLESAQALLAERRSGLLSSAAAQAGDVLCNWLEAELREIRERMA 553 (634)
Q Consensus 494 ~a~~~i~~a~~~a~~g~~~~A~~~L~~~~~~l~~s~~~~~~d~~~~~L~~eL~e~~~~~~ 553 (634)
.|.+.+.+|...-+.|++++|...-.++...+............-..+.....+...+++
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~raE 66 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRAE 66 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 466678888888889999999998888777775532222222333445555566665554
No 240
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=41.95 E-value=19 Score=26.96 Aligned_cols=44 Identities=20% Similarity=0.461 Sum_probs=22.1
Q ss_pred ccccccccccCCc-----ceeEecCCCCccchhhHHHHHhcCCCcCcccc
Q 043643 3 CPICLGSLRRGQG-----VAIFTAECSHSFHFCCIAANVQHGNRICPICR 47 (634)
Q Consensus 3 C~ICl~~~~~~~~-----~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr 47 (634)
|--|+..|..+.. ..-....|++.||..|=.- +...-..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~f-iHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVF-IHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHT-TTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChh-hhccccCCcCCC
Confidence 6667887766321 2234478999999999643 221133799984
No 241
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.58 E-value=11 Score=43.60 Aligned_cols=45 Identities=18% Similarity=0.437 Sum_probs=30.3
Q ss_pred CccccccccccCCc--ceeEecCCCCccchhhHHHHHhcCCCcCccccc
Q 043643 2 TCPICLGSLRRGQG--VAIFTAECSHSFHFCCIAANVQHGNRICPICRC 48 (634)
Q Consensus 2 ~C~ICl~~~~~~~~--~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~ 48 (634)
.|.-|++....... .......|+|.||..|+..-.-+.. |-.|..
T Consensus 786 rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~--~~~~~~ 832 (846)
T KOG2066|consen 786 RCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA--CNIESG 832 (846)
T ss_pred hhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc--cChhhc
Confidence 58889987753221 2245678999999999977543322 777744
No 242
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=40.19 E-value=63 Score=28.65 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=25.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Q 043643 498 TIADAQRMAEVGDLESAQALLAERRSGLLS 527 (634)
Q Consensus 498 ~i~~a~~~a~~g~~~~A~~~L~~~~~~l~~ 527 (634)
..-+|+..++.|++++|..+|.++...+.+
T Consensus 34 ~~~eAl~~Ak~gdfe~A~~~l~eA~e~l~~ 63 (115)
T PRK10454 34 LAYAALKQAKQGDFAAAKAMMDQSRMALNE 63 (115)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 344778889999999999999999988854
No 243
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=38.76 E-value=5 Score=32.04 Aligned_cols=40 Identities=25% Similarity=0.492 Sum_probs=21.9
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.||.|...+.. . . +|.+|..|-..+... ..||-|..++..
T Consensus 3 ~CP~C~~~L~~-------~-~-~~~~C~~C~~~~~~~--a~CPdC~~~Le~ 42 (70)
T PF07191_consen 3 TCPKCQQELEW-------Q-G-GHYHCEACQKDYKKE--AFCPDCGQPLEV 42 (70)
T ss_dssp B-SSS-SBEEE-------E-T-TEEEETTT--EEEEE--EE-TTT-SB-EE
T ss_pred cCCCCCCccEE-------e-C-CEEECccccccceec--ccCCCcccHHHH
Confidence 69999999754 1 1 677777787654332 369999887654
No 244
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.25 E-value=12 Score=41.55 Aligned_cols=40 Identities=33% Similarity=0.786 Sum_probs=30.0
Q ss_pred CccccccccccCCcceeEe---cCCCCccchhhHHHHHhcCCC
Q 043643 2 TCPICLGSLRRGQGVAIFT---AECSHSFHFCCIAANVQHGNR 41 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~---~~C~H~Fh~~Ci~~w~~~~~~ 41 (634)
.||.|...+....++.-.+ ..|.|.||..|+..|..++..
T Consensus 228 ~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h~~~ 270 (444)
T KOG1815|consen 228 ECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDHGSS 270 (444)
T ss_pred cCCCcccchhccCCccccccccCCcCCeeceeeeccccccccc
Confidence 4999999988765554322 249999999998889877543
No 245
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.36 E-value=7.1 Score=40.60 Aligned_cols=48 Identities=21% Similarity=0.444 Sum_probs=36.2
Q ss_pred Ccccccccccc-CCcceeEecC--------CCCccchhhHHHHHhcCCCcCcccccc
Q 043643 2 TCPICLGSLRR-GQGVAIFTAE--------CSHSFHFCCIAANVQHGNRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~-~~~~~~~~~~--------C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~ 49 (634)
.|.||...+.. .....+.... |+|..|..|+..-+......||.|+..
T Consensus 209 ~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 209 LCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 48899988873 2444555566 999999999999765434789999864
No 246
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=34.93 E-value=23 Score=31.51 Aligned_cols=47 Identities=15% Similarity=0.301 Sum_probs=29.6
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRC 48 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~ 48 (634)
.|.+|...|.--.........|.|.+|..|-..-.....-.|-+|.+
T Consensus 56 ~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 56 HCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp B-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHH
T ss_pred chhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHH
Confidence 69999988753223346778999999999965411122225888865
No 247
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=34.57 E-value=29 Score=23.28 Aligned_cols=37 Identities=22% Similarity=0.508 Sum_probs=24.3
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEW 50 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~ 50 (634)
.|..|.+.+..+ ...+ ..=+..||..|+ .|..|+..+
T Consensus 1 ~C~~C~~~i~~~--~~~~-~~~~~~~H~~Cf---------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGG--ELVL-RALGKVWHPECF---------KCSKCGKPL 37 (39)
T ss_pred CccccCCcccCC--cEEE-EeCCccccccCC---------CCcccCCcC
Confidence 488898888662 1122 223678998886 588887654
No 248
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=34.31 E-value=21 Score=40.47 Aligned_cols=34 Identities=32% Similarity=0.835 Sum_probs=24.9
Q ss_pred cceeEecCCCCccchhhHHHHHhc----CCCcCccccc
Q 043643 15 GVAIFTAECSHSFHFCCIAANVQH----GNRICPICRC 48 (634)
Q Consensus 15 ~~~~~~~~C~H~Fh~~Ci~~w~~~----~~~~CP~Cr~ 48 (634)
+..+....|+-.+|..|+..|.++ +.-.||-||.
T Consensus 33 g~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 33 GRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred CcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 334566789999999999999863 2335887764
No 249
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=33.78 E-value=11 Score=39.16 Aligned_cols=48 Identities=21% Similarity=0.566 Sum_probs=24.2
Q ss_pred CccccccccccCCcceeEecCCCCcc--------chhhHHHHH----hcCCCcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSF--------HFCCIAANV----QHGNRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~F--------h~~Ci~~w~----~~~~~~CP~Cr~~ 49 (634)
-||+|-+....=.-....+-+|.-.| |..|+..-. +...+.||.||..
T Consensus 17 lCPVCGDkVSGYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQ 76 (475)
T KOG4218|consen 17 LCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQ 76 (475)
T ss_pred ccccccCccccceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHH
Confidence 59999988753111112223454444 334544311 1224579999853
No 250
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=33.35 E-value=1.6e+02 Score=25.19 Aligned_cols=30 Identities=37% Similarity=0.474 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Q 043643 498 TIADAQRMAEVGDLESAQALLAERRSGLLS 527 (634)
Q Consensus 498 ~i~~a~~~a~~g~~~~A~~~L~~~~~~l~~ 527 (634)
..-+|+..++.|++++|..+|.++...+.+
T Consensus 17 ~~~eAl~~a~~~~fe~A~~~l~~a~~~l~~ 46 (96)
T PF02255_consen 17 LAMEALKAAREGDFEEAEELLKEADEELLK 46 (96)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 345677888999999999999999888854
No 251
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=31.57 E-value=2.5e+02 Score=21.89 Aligned_cols=58 Identities=24% Similarity=0.244 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHH
Q 043643 494 LVAETIADAQRMAEVGDLESAQALLAERRSGLLSSAAAQAGDVLCNWLEAELREIRER 551 (634)
Q Consensus 494 ~a~~~i~~a~~~a~~g~~~~A~~~L~~~~~~l~~s~~~~~~d~~~~~L~~eL~e~~~~ 551 (634)
.|...+.+|...-+.|++++|...-.++...|........++..-..|.....+-..|
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~R 61 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLER 61 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 4666788888888999999999988887777654332222233333344444444333
No 252
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.49 E-value=41 Score=38.73 Aligned_cols=53 Identities=23% Similarity=0.431 Sum_probs=38.7
Q ss_pred CCccccccccccCCcceeEecCCCC-ccchhhHHHHHh-cC----CCcCcccccccccCCCCCC
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSH-SFHFCCIAANVQ-HG----NRICPICRCEWKDVPFQAP 58 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H-~Fh~~Ci~~w~~-~~----~~~CP~Cr~~~~~~p~~~~ 58 (634)
+.|+||-....- .....||| .-|..|..+..- .. ...||+||..+....+...
T Consensus 1 ~~c~ic~~s~~~-----~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~s~~~~ 59 (669)
T KOG2231|consen 1 DSCAICAFSPDF-----VGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETKSNGDS 59 (669)
T ss_pred CCcceeecCccc-----cccccccccccchhhhhhhhhhcccccccccCcccccceeeeccccc
Confidence 579999987755 55678999 889999988542 11 2358999998776665543
No 253
>PF01882 DUF58: Protein of unknown function DUF58; InterPro: IPR002881 This domain is found in a family of prokaryotic proteins that have no known function. Proteins belonging to this family include hypothetical proteins from eubacteria and archaebacteria. Some of these proteins also contain the Von Willebrand factor, type A domain (see IPR002035 from INTERPRO).
Probab=31.48 E-value=63 Score=26.42 Aligned_cols=40 Identities=23% Similarity=0.151 Sum_probs=27.9
Q ss_pred CCceEEEEEeCCCCCCc------cHHHHHHHHHHHHHhc-CCCCeEE
Q 043643 166 APIDLVTVLDVSGSMSS------KLPLLKRAVHFIIQNL-GSADRLS 205 (634)
Q Consensus 166 ~p~dlv~VlD~SgSM~g------kl~~~K~al~~li~~L-~~~drvs 205 (634)
...++++++|.+++|.. +++.+...+..++..+ ..++.++
T Consensus 39 ~~~~~~i~ld~~~~~~~~~~~~~~~e~~l~~a~~l~~~~~~~g~~v~ 85 (86)
T PF01882_consen 39 RSQPVWIVLDLSPSMYFGSNGRSKFERALSAAASLANQALRQGDPVG 85 (86)
T ss_pred cCCcEEEEEECCCccccCcCCCCHHHHHHHHHHHHHHHHHhcCCccc
Confidence 35789999999999974 5666666666655544 4566554
No 254
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.29 E-value=22 Score=29.63 Aligned_cols=12 Identities=17% Similarity=0.362 Sum_probs=10.8
Q ss_pred ccchhhHHHHHh
Q 043643 26 SFHFCCIAANVQ 37 (634)
Q Consensus 26 ~Fh~~Ci~~w~~ 37 (634)
-||+.|+..|..
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 599999999995
No 255
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=30.46 E-value=28 Score=35.25 Aligned_cols=48 Identities=21% Similarity=0.573 Sum_probs=30.4
Q ss_pred CccccccccccCCcceeE--ecCCCCccchhhHHHHH-h--cC-----CCcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIF--TAECSHSFHFCCIAANV-Q--HG-----NRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~--~~~C~H~Fh~~Ci~~w~-~--~~-----~~~CP~Cr~~ 49 (634)
.|-+|...+.+.+..... ...|+-.+|..|+..-. . .+ ...||.|++-
T Consensus 184 ~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~ 241 (276)
T KOG3005|consen 184 ECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKF 241 (276)
T ss_pred hhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhce
Confidence 688999988431111111 14588899999999833 2 11 2269999874
No 256
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=29.35 E-value=53 Score=28.62 Aligned_cols=29 Identities=28% Similarity=0.562 Sum_probs=20.7
Q ss_pred cCC---CCccchhhHHHHHh--------cCCCcCcccccc
Q 043643 21 AEC---SHSFHFCCIAANVQ--------HGNRICPICRCE 49 (634)
Q Consensus 21 ~~C---~H~Fh~~Ci~~w~~--------~~~~~CP~Cr~~ 49 (634)
..| .-.||..|+..+.. ..+-.||.||..
T Consensus 31 ~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 31 SSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred CCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 456 66899999988663 234469999864
No 257
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=29.26 E-value=35 Score=30.64 Aligned_cols=17 Identities=6% Similarity=0.038 Sum_probs=10.7
Q ss_pred CCcCcccccccccCCCC
Q 043643 40 NRICPICRCEWKDVPFQ 56 (634)
Q Consensus 40 ~~~CP~Cr~~~~~~p~~ 56 (634)
...||.|...|...++.
T Consensus 26 p~vcP~cg~~~~~~~~~ 42 (129)
T TIGR02300 26 PAVSPYTGEQFPPEEAL 42 (129)
T ss_pred CccCCCcCCccCcchhh
Confidence 44688887776555443
No 258
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=27.91 E-value=1.1e+02 Score=28.73 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=34.2
Q ss_pred CceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcCCCCeEEE
Q 043643 167 PIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLGSADRLSI 206 (634)
Q Consensus 167 p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~~~drvsI 206 (634)
+.--+||||-.|+|.. ..+.+++-+..++.-..++|.|=|
T Consensus 96 ~~~r~~VldF~Gdi~A~~v~~LReeisail~~a~~~DeV~~ 136 (155)
T PF08496_consen 96 PKPRLFVLDFKGDIKASEVESLREEISAILSVATPEDEVLV 136 (155)
T ss_pred CCCeEEEEecCCCccHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 3446899999999999 899999999999988889998744
No 259
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=27.76 E-value=8.3e+02 Score=27.41 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=29.0
Q ss_pred HHHHHhhcCCeEEEcCChhhHHHHHHHHhhccccceeeee
Q 043643 336 MHAIADASGGTFSFIETLSILQDAFARCIGGLLSVVSQDV 375 (634)
Q Consensus 336 L~~iA~~tgG~~~~i~~~~~l~~~f~~~l~~l~s~va~~~ 375 (634)
.+++++.-||.=||+++.++|..++.+....--.+..-|+
T Consensus 518 Y~~v~ka~G~kG~~v~t~~el~~~l~~a~q~~~~psvINV 557 (571)
T KOG1185|consen 518 YDKVAKAFGGKGYFVSTVEELLAALQQACQDTDKPSVINV 557 (571)
T ss_pred HHHHHHHcCCCceeeCCHHHHHHHHHHHHhcCCCCeEEEE
Confidence 3566777788889999999999999887765434444333
No 260
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=27.71 E-value=29 Score=39.54 Aligned_cols=54 Identities=22% Similarity=0.521 Sum_probs=33.8
Q ss_pred CCccccccccccCCcceeEe-----cCCCCccchhhHHHHH----h-----cCCCcCcccccccccCC
Q 043643 1 KTCPICLGSLRRGQGVAIFT-----AECSHSFHFCCIAANV----Q-----HGNRICPICRCEWKDVP 54 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~-----~~C~H~Fh~~Ci~~w~----~-----~~~~~CP~Cr~~~~~~p 54 (634)
++|-||.|.=++..-..-.+ -.|...||..|-...- . ...+.|-+|+..|..+.
T Consensus 118 KtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsKlk 185 (900)
T KOG0956|consen 118 KTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSKLK 185 (900)
T ss_pred ceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHHHhh
Confidence 57999999854432111111 3477789999987632 1 22346999998776543
No 261
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=27.67 E-value=45 Score=22.92 Aligned_cols=9 Identities=33% Similarity=1.006 Sum_probs=4.5
Q ss_pred ccccccccc
Q 043643 3 CPICLGSLR 11 (634)
Q Consensus 3 C~ICl~~~~ 11 (634)
|+-|.-.|.
T Consensus 5 Cp~C~~~y~ 13 (36)
T PF13717_consen 5 CPNCQAKYE 13 (36)
T ss_pred CCCCCCEEe
Confidence 555555443
No 262
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=27.67 E-value=2.3e+02 Score=23.35 Aligned_cols=36 Identities=31% Similarity=0.210 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhh
Q 043643 494 LVAETIADAQRMAEVGDLESAQALLAERRSGLLSSA 529 (634)
Q Consensus 494 ~a~~~i~~a~~~a~~g~~~~A~~~L~~~~~~l~~s~ 529 (634)
.|.+.|..|+..-|.|+.++|...-+..++.|.+..
T Consensus 7 ~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ 42 (79)
T cd02679 7 QAFEEISKALRADEWGDKEQALAHYRKGLRELEEGI 42 (79)
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHc
Confidence 467789999999999999999999998888887643
No 263
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.49 E-value=56 Score=28.78 Aligned_cols=46 Identities=22% Similarity=0.387 Sum_probs=29.7
Q ss_pred CccccccccccCC---------cceeEecCCCCccchhhHHHHHhcCCCcCccccc
Q 043643 2 TCPICLGSLRRGQ---------GVAIFTAECSHSFHFCCIAANVQHGNRICPICRC 48 (634)
Q Consensus 2 ~C~ICl~~~~~~~---------~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~ 48 (634)
.|--|+..|.... ...-....|.+.||.+|=.-+... -..||-|..
T Consensus 57 ~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~-Lh~CPGC~~ 111 (112)
T TIGR00622 57 FCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHES-LHCCPGCIH 111 (112)
T ss_pred cccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhh-ccCCcCCCC
Confidence 4777887775420 111224679999999997766543 336999963
No 264
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=27.45 E-value=32 Score=36.65 Aligned_cols=52 Identities=25% Similarity=0.521 Sum_probs=34.1
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh---------------------cCC--CcCcccccccccCCCC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ---------------------HGN--RICPICRCEWKDVPFQ 56 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~---------------------~~~--~~CP~Cr~~~~~~p~~ 56 (634)
.|+||+-.+... .-.+..|.-..|..|+..... ... ..||.|..+|...-..
T Consensus 76 ecpicflyyps~---~n~~rcC~~~Ic~ecf~~~~~~~~~~pt~~a~v~~~~~f~~~s~p~~~~cp~c~t~~~~vey~ 150 (482)
T KOG2789|consen 76 ECPICFLYYPSA---KNLVRCCSETICGECFAPFGCYSFEKPTYDATVVKNLIFKRKSAPFYTPCPDCDTSWTRVEYI 150 (482)
T ss_pred cCceeeeecccc---cchhhhhccchhhhheecccCCCcccCccccccccccccccccccccccCCccCCcccceeee
Confidence 699999887541 123455888888888866431 001 2599999998754433
No 265
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=27.32 E-value=21 Score=38.21 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=0.0
Q ss_pred ceeEecCCCCccchhhHHHHHhc-----CCCcCccccccccc
Q 043643 16 VAIFTAECSHSFHFCCIAANVQH-----GNRICPICRCEWKD 52 (634)
Q Consensus 16 ~~~~~~~C~H~Fh~~Ci~~w~~~-----~~~~CP~Cr~~~~~ 52 (634)
++-+.+.|||.+-.+ .|... ....||+||..-..
T Consensus 302 qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~~ 340 (416)
T PF04710_consen 302 QPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGPY 340 (416)
T ss_dssp ------------------------------------------
T ss_pred Cceeeccccceeeec---ccccccccccccccCCCccccCCc
Confidence 344568999987543 45431 24579999976333
No 266
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.55 E-value=30 Score=39.41 Aligned_cols=44 Identities=25% Similarity=0.645 Sum_probs=32.0
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCC
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVP 54 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p 54 (634)
|.|.||++.+ . .....|. |..|+..|... ...||+|+.......
T Consensus 480 ~~~~~~~~~~-~-----~~~~~~~---~~~~l~~~~~~-~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 480 DVCAICYQEM-S-----ARITPCS---HALCLRKWLYV-QEVCPLCHTYMKEDD 523 (543)
T ss_pred CcchHHHHHH-H-----hcccccc---chhHHHhhhhh-ccccCCCchhhhccc
Confidence 5688999988 2 2334576 78899999875 447999998765433
No 267
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.20 E-value=33 Score=30.63 Aligned_cols=12 Identities=42% Similarity=0.811 Sum_probs=10.0
Q ss_pred eEecCCCCccch
Q 043643 18 IFTAECSHSFHF 29 (634)
Q Consensus 18 ~~~~~C~H~Fh~ 29 (634)
....+|||+||.
T Consensus 70 v~rcecghsf~d 81 (165)
T COG4647 70 VIRCECGHSFGD 81 (165)
T ss_pred EEEEeccccccC
Confidence 566789999986
No 268
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=26.02 E-value=9.1 Score=41.05 Aligned_cols=42 Identities=19% Similarity=0.531 Sum_probs=27.3
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCCCCC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQA 57 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~~~ 57 (634)
.|..|-+.+.+ .+..-||..||-.|+ +|-+|.+.+..+||--
T Consensus 336 kC~~Cg~~I~d-----~iLrA~GkayHp~CF---------~Cv~C~r~ldgipFtv 377 (468)
T KOG1701|consen 336 KCNKCGEPIMD-----RILRALGKAYHPGCF---------TCVVCARCLDGIPFTV 377 (468)
T ss_pred HHhhhhhHHHH-----HHHHhcccccCCCce---------EEEEeccccCCccccc
Confidence 35555555544 233446666776665 6999988888888763
No 269
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=25.88 E-value=1.2e+02 Score=18.82 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=16.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 043643 499 IADAQRMAEVGDLESAQALLA 519 (634)
Q Consensus 499 i~~a~~~a~~g~~~~A~~~L~ 519 (634)
+..+..+...|++++|..+|+
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345667888999999998875
No 270
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=25.22 E-value=43 Score=29.36 Aligned_cols=38 Identities=21% Similarity=0.433 Sum_probs=0.0
Q ss_pred cceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCCCCCC
Q 043643 15 GVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQAP 58 (634)
Q Consensus 15 ~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~~~~ 58 (634)
|.+.++..||-.|.- +++...+||.|-+.|...+..+.
T Consensus 7 GtKR~Cp~CG~kFYD------Lnk~PivCP~CG~~~~~~~~~k~ 44 (108)
T PF09538_consen 7 GTKRTCPSCGAKFYD------LNKDPIVCPKCGTEFPPEPPLKS 44 (108)
T ss_pred CCcccCCCCcchhcc------CCCCCccCCCCCCccCccccccc
No 271
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=24.38 E-value=15 Score=38.26 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=16.8
Q ss_pred CCccccccccccCCcceeEecC----CCCccchhhHHHHHhcCCCcCcccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAE----CSHSFHFCCIAANVQHGNRICPICRCE 49 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~----C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~ 49 (634)
..||||-..-.-+ .+... -.|.+|..|-..|.-. ...||.|-..
T Consensus 173 g~CPvCGs~P~~s----~l~~~~~~G~R~L~Cs~C~t~W~~~-R~~Cp~Cg~~ 220 (290)
T PF04216_consen 173 GYCPVCGSPPVLS----VLRGGEREGKRYLHCSLCGTEWRFV-RIKCPYCGNT 220 (290)
T ss_dssp SS-TTT---EEEE----EEE------EEEEEETTT--EEE---TTS-TTT---
T ss_pred CcCCCCCCcCceE----EEecCCCCccEEEEcCCCCCeeeec-CCCCcCCCCC
Confidence 3699998753210 11111 1345666777777544 4479999543
No 272
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=24.27 E-value=5.3e+02 Score=29.52 Aligned_cols=28 Identities=21% Similarity=0.198 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCCCccHHHHHHHHHHHH
Q 043643 168 IDLVTVLDVSGSMSSKLPLLKRAVHFII 195 (634)
Q Consensus 168 ~dlv~VlD~SgSM~gkl~~~K~al~~li 195 (634)
.-+.+|||.|-||......+.+++..+-
T Consensus 637 ~~~ai~id~s~smge~~~~~t~~l~~l~ 664 (952)
T TIGR02921 637 QPVAILIDGSRSMGEHAGELTQALKQLK 664 (952)
T ss_pred ceeEEEEecchhHHHHHHHHHHHHHHHH
Confidence 4588999999999876666666666553
No 273
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.20 E-value=37 Score=30.18 Aligned_cols=23 Identities=30% Similarity=0.702 Sum_probs=17.0
Q ss_pred ccchhhHHHHHhcCCCcCccccccccc
Q 043643 26 SFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 26 ~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.||.+|-..-.. .||.|.++++-
T Consensus 29 afcskcgeati~----qcp~csasirg 51 (160)
T COG4306 29 AFCSKCGEATIT----QCPICSASIRG 51 (160)
T ss_pred HHHhhhchHHHh----cCCccCCcccc
Confidence 689999765433 59999887653
No 274
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=23.57 E-value=1.4e+02 Score=21.55 Aligned_cols=23 Identities=43% Similarity=0.488 Sum_probs=19.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 043643 500 ADAQRMAEVGDLESAQALLAERR 522 (634)
Q Consensus 500 ~~a~~~a~~g~~~~A~~~L~~~~ 522 (634)
.-|+..++-||.++|+.+|++..
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 34677889999999999999865
No 275
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=23.35 E-value=1.1e+02 Score=31.99 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 043643 183 KLPLLKRAVHFIIQNLGSADRLSIVIFSSV 212 (634)
Q Consensus 183 kl~~~K~al~~li~~L~~~drvsIV~Fs~~ 212 (634)
.|+.++.++...++.|.++-|++||+|-+=
T Consensus 219 EL~~L~~~L~~a~~~L~~gGRl~VIsFHSL 248 (314)
T COG0275 219 ELEELEEALEAALDLLKPGGRLAVISFHSL 248 (314)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEEecch
Confidence 789999999999999999999999999873
No 276
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=22.77 E-value=1.3e+02 Score=28.03 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 043643 495 VAETIADAQRMAEVGDLESAQALLAERRSGLL 526 (634)
Q Consensus 495 a~~~i~~a~~~a~~g~~~~A~~~L~~~~~~l~ 526 (634)
+.+.+..|+.+..+|+.++|...|.++...|.
T Consensus 2 A~~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~ 33 (155)
T PF10938_consen 2 AMRDIQKARLALFQGDTDEAKKLLEDAQGKLD 33 (155)
T ss_dssp HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 55678899999999999999999999998885
No 277
>PF10221 DUF2151: Cell cycle and development regulator; InterPro: IPR019355 This entry represents the cell cycle regulator Mat89b, which plays an evolutionarily conserved role as a crucial regulator of both cell cycle and development []. Mat89Bb is a PNG kinase substrate that is essential for S-M cycles of early Drosophila embryogenesis, Xenopus embryonic cell cycles and morphogenesis, and cell division in cultured mammalian cells.
Probab=22.72 E-value=3.6e+02 Score=31.66 Aligned_cols=83 Identities=11% Similarity=0.232 Sum_probs=54.1
Q ss_pred HHHhcCCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCCCC-----CCC--cHHHHHHHHHHHHHhhc------
Q 043643 194 IIQNLGSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLSSN-----GGT--NIVEGLKKGARVLEERR------ 260 (634)
Q Consensus 194 li~~L~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~~~-----GgT--~i~~aL~~A~~~l~~~~------ 260 (634)
+-+-++.+-++.+|+++..++.+-.+.. ...+...+.+.+..+.+- ..+ .+-.||..|++.|....
T Consensus 60 V~DlFP~~k~IrfivsD~~a~~lntW~~-~~Qsl~~L~~~la~vG~P~~~~~~~~d~svi~GL~~AIEaL~e~td~Q~e~ 138 (695)
T PF10221_consen 60 VWDLFPDGKLIRFIVSDTAAHILNTWST-SQQSLSHLMNALATVGPPPRSDPENSDYSVIHGLRMAIEALAEPTDSQKEQ 138 (695)
T ss_pred HhhccCCCceEEEEEEccccccccCcCh-hhccHHHHHHHHHhcCCCCCCCcccccchhHHHHHHHHHHHhcCCHHHHHH
Confidence 3344556778999999999998877552 345667777777766332 122 57799999999773210
Q ss_pred --c--------CCCCcEEEEEeCCCCC
Q 043643 261 --E--------RSPVASIILLSDGQDT 277 (634)
Q Consensus 261 --~--------~~~~~~IILlTDG~~~ 277 (634)
. -....+||+||.-..+
T Consensus 139 ~~~~~~~~~~~~~N~GrIIciT~~k~d 165 (695)
T PF10221_consen 139 RASRVNEELKKVENRGRIICITSAKSD 165 (695)
T ss_pred hhcccchhhhhccCCccEEEEEeecCc
Confidence 0 0123568999866655
No 278
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=22.07 E-value=3.6e+02 Score=28.49 Aligned_cols=93 Identities=15% Similarity=0.069 Sum_probs=48.7
Q ss_pred CCCCCCc----cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcE-EEEcCcccCHHHHHHHH---HHHhcCCCCCCCcHHH
Q 043643 176 VSGSMSS----KLPLLKRAVHFIIQNLGSADRLSIVIFSSVAR-RIFPLQRMTDSGRENAI---RAINTLSSNGGTNIVE 247 (634)
Q Consensus 176 ~SgSM~g----kl~~~K~al~~li~~L~~~drvsIV~Fs~~a~-~~~pl~~~t~~~~~~~~---~~I~~l~~~GgT~i~~ 247 (634)
..|.|.. -+..-+.|+...++..+. ..++|+=.-+.-+ .+-.+- ...+.+. ..+..++.+ +-++..
T Consensus 189 ~~GT~aHs~i~~~~~e~~A~~~~~~~~p~-~~i~L~Dtyd~~~~~~~~~l----~~~~~l~~~~~~~~gvR~D-SGd~~~ 262 (327)
T cd01570 189 VSGTMAHSFVQAFDDELAAFRAFAEAYPD-NFTLLVDTYDTLRSGLPNAI----AVAKELGALGYRLVGVRID-SGDLAY 262 (327)
T ss_pred cccccHHHHHHhhhhHHHHHHHHHHHCCC-CcEEEEEcccchhhhHHHHH----HHHHHHHhhCCCceEEEeC-CCCHHH
Confidence 4466755 223445677777777654 5666663222210 000000 0011111 122234445 557778
Q ss_pred HHHHHHHHHHhhccCCCCcEEEEEeCCCCC
Q 043643 248 GLKKGARVLEERRERSPVASIILLSDGQDT 277 (634)
Q Consensus 248 aL~~A~~~l~~~~~~~~~~~IILlTDG~~~ 277 (634)
-..++.+.|+..... ++ -|++|||.+.
T Consensus 263 ~~~~~r~~l~~~G~~-~~--~Iv~Sdgld~ 289 (327)
T cd01570 263 LSKEARKMLDEAGLT-KV--KIVASNDLDE 289 (327)
T ss_pred HHHHHHHHHHHCCCC-Cc--EEEEeCCCCH
Confidence 888888888776543 23 7889999853
No 279
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=22.04 E-value=65 Score=22.23 Aligned_cols=9 Identities=33% Similarity=0.944 Sum_probs=5.1
Q ss_pred cCccccccc
Q 043643 42 ICPICRCEW 50 (634)
Q Consensus 42 ~CP~Cr~~~ 50 (634)
.||.|+..|
T Consensus 27 rC~~C~~~f 35 (37)
T PF13719_consen 27 RCPKCGHVF 35 (37)
T ss_pred ECCCCCcEe
Confidence 466665554
No 280
>PRK04023 DNA polymerase II large subunit; Validated
Probab=21.48 E-value=48 Score=39.82 Aligned_cols=41 Identities=20% Similarity=0.196 Sum_probs=24.0
Q ss_pred CccccccccccCCcceeEecCCCC-----ccchhhHHHHHhcCCCcCccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSH-----SFHFCCIAANVQHGNRICPICRCEW 50 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H-----~Fh~~Ci~~w~~~~~~~CP~Cr~~~ 50 (634)
.|+-|-..... ..+..||. .||..|-.. .....||.|....
T Consensus 628 fCpsCG~~t~~-----frCP~CG~~Te~i~fCP~CG~~---~~~y~CPKCG~El 673 (1121)
T PRK04023 628 KCPSCGKETFY-----RRCPFCGTHTEPVYRCPRCGIE---VEEDECEKCGREP 673 (1121)
T ss_pred cCCCCCCcCCc-----ccCCCCCCCCCcceeCccccCc---CCCCcCCCCCCCC
Confidence 47777666433 34556773 588888322 1234688887653
No 281
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=21.32 E-value=53 Score=34.25 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=20.9
Q ss_pred CCCccchhhHHHHHhcCCCcCcccccc
Q 043643 23 CSHSFHFCCIAANVQHGNRICPICRCE 49 (634)
Q Consensus 23 C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~ 49 (634)
-|-.||..||..++.. ...||+-..+
T Consensus 319 SGyVfCY~Ci~~Yv~~-~~~CPVT~~p 344 (357)
T KOG0826|consen 319 SGYVFCYPCIFSYVVN-YGHCPVTGYP 344 (357)
T ss_pred cceEEeHHHHHHHHHh-cCCCCccCCc
Confidence 3889999999999874 4579986554
No 282
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=21.20 E-value=67 Score=31.63 Aligned_cols=27 Identities=19% Similarity=0.550 Sum_probs=16.4
Q ss_pred cchhhHHHHHhcCCCcCcccccccccCC
Q 043643 27 FHFCCIAANVQHGNRICPICRCEWKDVP 54 (634)
Q Consensus 27 Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p 54 (634)
-|..|...-.+ .-..||+|+++-+...
T Consensus 251 ~ClsChqqIHR-NAPiCPlCKaKsRSrN 277 (286)
T KOG4451|consen 251 VCLSCHQQIHR-NAPICPLCKAKSRSRN 277 (286)
T ss_pred HHHHHHHHHhc-CCCCCcchhhccccCC
Confidence 35556554333 2558999998755443
No 283
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=20.94 E-value=31 Score=37.89 Aligned_cols=55 Identities=18% Similarity=0.422 Sum_probs=36.4
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh-------cCCCcCcccccccccCCCC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ-------HGNRICPICRCEWKDVPFQ 56 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~-------~~~~~CP~Cr~~~~~~p~~ 56 (634)
.|.+|...........+.+-.|+..||..|.....+ .....|-+|...-...+..
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~r~ 231 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVPRL 231 (464)
T ss_pred eeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhhcccc
Confidence 388999655432235566788999999999876543 1123599998765555543
No 284
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=20.66 E-value=5.3e+02 Score=22.61 Aligned_cols=78 Identities=15% Similarity=0.076 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh---hhhhcchHHHHHHHHHHHHHHHHhhchHHHhhhchhhhhhhhhhh
Q 043643 497 ETIADAQRMAEVGDLESAQALLAERRSGLLSS---AAAQAGDVLCNWLEAELREIRERMASMDLYERTGRAYLLSGLSSH 573 (634)
Q Consensus 497 ~~i~~a~~~a~~g~~~~A~~~L~~~~~~l~~s---~~~~~~d~~~~~L~~eL~e~~~~~~~~~~y~~~G~~y~~s~~ssH 573 (634)
+.+..+...+++++.++|...+++..+...+. -+-......+..+..+|..+...+..+...+..+.-..+..+-.|
T Consensus 30 ~~l~~i~~~i~~~dW~~A~~~~~~l~~~W~k~~~~~~~~~~h~eid~i~~sl~rl~~~i~~~dk~~~l~el~~lk~~i~~ 109 (121)
T PF14276_consen 30 EQLEQIEEAIENEDWEKAYKETEELEKEWDKNKKRWSILIEHQEIDNIDISLARLKGYIEAKDKSESLAELAELKELIEH 109 (121)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhchheeeeecHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34566777888999999998876655444331 111223456677888888888777666655555555544444444
Q ss_pred h
Q 043643 574 S 574 (634)
Q Consensus 574 ~ 574 (634)
-
T Consensus 110 i 110 (121)
T PF14276_consen 110 I 110 (121)
T ss_pred H
Confidence 3
No 285
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=20.50 E-value=49 Score=24.68 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=27.9
Q ss_pred ccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCC
Q 043643 3 CPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVP 54 (634)
Q Consensus 3 C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p 54 (634)
|+.|...+.. .. .+...-+..||..|+ .|-.|+..+....
T Consensus 1 C~~C~~~I~~--~~-~~~~~~~~~~H~~Cf---------~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYG--TE-IVIKAMGKFWHPECF---------KCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESS--SS-EEEEETTEEEETTTS---------BETTTTCBTTTSS
T ss_pred CCCCCCCccC--cE-EEEEeCCcEEEcccc---------ccCCCCCccCCCe
Confidence 7788888875 22 222236789999886 6999988765543
Done!