Query 043643
Match_columns 634
No_of_seqs 803 out of 3470
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 11:40:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043643.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043643hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fx5_A VON willebrand factor t 100.0 3.6E-41 1.2E-45 369.1 41.3 328 163-527 73-414 (464)
2 1ijb_A VON willebrand factor; 99.9 8.5E-24 2.9E-28 206.7 16.9 182 162-369 8-197 (202)
3 1q0p_A Complement factor B; VO 99.9 1.3E-23 4.5E-28 207.8 17.1 189 163-366 11-218 (223)
4 4hqo_A Sporozoite surface prot 99.9 6.3E-23 2.2E-27 209.2 18.0 182 164-371 15-210 (266)
5 3zqk_A VON willebrand factor; 99.9 1.7E-22 5.9E-27 196.9 16.4 171 162-369 16-195 (199)
6 3ibs_A Conserved hypothetical 99.9 2.6E-22 9.1E-27 197.9 17.3 172 162-367 6-212 (218)
7 1shu_X Anthrax toxin receptor 99.9 5.3E-22 1.8E-26 189.9 17.5 178 163-367 2-181 (182)
8 1mf7_A Integrin alpha M; cell 99.9 1.1E-22 3.7E-27 197.2 10.9 179 165-370 3-192 (194)
9 4hqf_A Thrombospondin-related 99.9 4E-22 1.4E-26 205.0 15.4 183 163-371 17-213 (281)
10 2x31_A Magnesium-chelatase 60 99.9 1.3E-23 4.5E-28 202.7 2.4 181 164-366 2-185 (189)
11 2b2x_A Integrin alpha-1; compu 99.9 5.5E-22 1.9E-26 196.8 14.1 178 163-369 18-213 (223)
12 3n2n_F Anthrax toxin receptor 99.9 7.6E-22 2.6E-26 189.4 14.1 175 163-367 3-184 (185)
13 1n3y_A Integrin alpha-X; alpha 99.9 3.1E-22 1.1E-26 194.4 9.6 179 164-369 6-195 (198)
14 1v7p_C Integrin alpha-2; snake 99.9 1.7E-21 5.7E-26 189.9 14.1 176 165-369 4-197 (200)
15 1pt6_A Integrin alpha-1; cell 99.9 8.6E-22 2.9E-26 193.9 12.0 177 164-369 4-198 (213)
16 3hrz_D Complement factor B; se 99.9 2.3E-21 8E-26 225.4 17.0 191 163-368 239-448 (741)
17 2odp_A Complement C2; C3/C5 co 99.9 3.4E-21 1.2E-25 214.4 17.5 186 164-366 6-212 (509)
18 1mjn_A Integrin alpha-L; rossm 99.9 8.8E-22 3E-26 188.6 10.4 165 167-365 2-177 (179)
19 1atz_A VON willebrand factor; 99.8 2.8E-20 9.7E-25 179.4 18.0 164 166-359 4-176 (189)
20 1rrk_A Complement factor B; BB 99.8 1.2E-20 4.2E-25 209.2 17.6 187 167-368 1-206 (497)
21 2xgg_A Microneme protein 2; A/ 99.8 3.2E-20 1.1E-24 177.5 14.3 151 162-338 12-170 (178)
22 4b4t_W RPN10, 26S proteasome r 99.8 6.5E-18 2.2E-22 169.9 15.2 147 170-345 6-163 (268)
23 2x5n_A SPRPN10, 26S proteasome 99.7 8.7E-17 3E-21 155.3 16.7 161 169-360 4-181 (192)
24 3k6s_A Integrin alpha-X; cell 99.7 1.7E-18 5.8E-23 207.0 4.0 182 162-370 125-317 (1095)
25 1pcx_A Protein transport prote 99.7 4.1E-15 1.4E-19 172.3 30.8 340 152-522 172-563 (810)
26 1m2v_B SEC24, protein transpor 99.7 9.6E-15 3.3E-19 170.3 28.9 342 151-522 287-679 (926)
27 2nut_A Protein transport prote 99.7 4.2E-14 1.4E-18 163.2 31.2 295 165-469 130-507 (769)
28 2ww8_A RRGA, cell WALL surface 99.6 1.8E-15 6.3E-20 176.1 18.5 136 144-280 200-394 (893)
29 3eh1_A Protein transport prote 99.6 5.3E-14 1.8E-18 161.5 29.0 333 152-521 145-528 (751)
30 1m2o_A SEC23, protein transpor 99.6 2E-13 7E-18 157.6 33.1 353 152-525 110-559 (768)
31 3efo_B SEC24 related gene fami 99.6 9.9E-13 3.4E-17 151.5 31.5 289 164-470 174-508 (770)
32 3eh2_A Protein transport prote 99.6 9.5E-13 3.3E-17 151.6 30.4 289 164-470 170-504 (766)
33 1jey_B KU80; double-strand DNA 99.5 1.7E-13 5.9E-18 153.7 13.6 158 168-354 8-231 (565)
34 1yvr_A RO autoantigen, 60-kDa 99.4 1.2E-12 4.1E-17 146.2 13.0 108 163-280 364-476 (538)
35 3rag_A Uncharacterized protein 99.2 1.9E-11 6.4E-16 120.0 9.1 89 166-259 133-228 (242)
36 1jey_A KU70; double-strand DNA 99.1 1.1E-10 3.9E-15 131.8 11.7 142 169-330 37-208 (609)
37 2nvo_A RO sixty-related protei 99.1 1.6E-10 5.5E-15 128.6 12.2 153 164-348 359-535 (535)
38 2ep4_A Ring finger protein 24; 99.1 5E-11 1.7E-15 96.3 4.7 53 1-56 16-68 (74)
39 2ecl_A Ring-box protein 2; RNF 99.1 4.6E-11 1.6E-15 98.4 4.3 51 1-52 16-76 (81)
40 2kiz_A E3 ubiquitin-protein li 99.1 7.8E-11 2.7E-15 93.7 5.1 50 1-53 15-64 (69)
41 2ect_A Ring finger protein 126 99.1 7.4E-11 2.5E-15 96.3 5.1 53 1-56 16-68 (78)
42 3dpl_R Ring-box protein 1; ubi 99.1 5.5E-11 1.9E-15 102.8 4.3 51 1-52 38-101 (106)
43 1v87_A Deltex protein 2; ring- 99.1 8E-11 2.8E-15 103.5 4.4 56 1-56 26-98 (114)
44 1iym_A EL5; ring-H2 finger, ub 99.0 9.5E-11 3.2E-15 88.8 3.4 47 1-50 6-53 (55)
45 2l0b_A E3 ubiquitin-protein li 99.0 9.3E-11 3.2E-15 98.8 3.5 47 2-51 42-88 (91)
46 4a0k_B E3 ubiquitin-protein li 99.0 2.7E-11 9.1E-16 106.2 0.0 51 1-52 49-112 (117)
47 1x4j_A Ring finger protein 38; 99.0 9.5E-11 3.2E-15 94.9 3.0 47 2-51 25-71 (75)
48 2d8t_A Dactylidin, ring finger 99.0 7.1E-11 2.4E-15 94.6 2.0 51 2-58 17-67 (71)
49 2ecm_A Ring finger and CHY zin 99.0 1.8E-10 6.3E-15 87.1 4.2 48 1-50 6-53 (55)
50 2djb_A Polycomb group ring fin 99.0 2.5E-10 8.4E-15 91.7 5.1 49 2-56 17-66 (72)
51 1t1h_A Gspef-atpub14, armadill 99.0 2.2E-10 7.4E-15 93.5 4.2 46 2-52 10-55 (78)
52 4ayc_A E3 ubiquitin-protein li 99.0 1.4E-10 4.9E-15 105.6 3.3 47 2-54 55-101 (138)
53 3fl2_A E3 ubiquitin-protein li 99.0 3E-10 1E-14 101.5 5.3 46 2-52 54-99 (124)
54 3lrq_A E3 ubiquitin-protein li 99.0 2.3E-10 7.7E-15 98.2 4.2 46 2-52 24-70 (100)
55 2ecy_A TNF receptor-associated 99.0 2.1E-10 7.1E-15 90.4 3.6 46 2-52 17-62 (66)
56 3ng2_A RNF4, snurf, ring finge 99.0 2.5E-10 8.5E-15 91.3 3.7 52 2-54 12-65 (71)
57 2ct0_A Non-SMC element 1 homol 99.0 4E-10 1.4E-14 90.2 4.3 50 1-54 16-66 (74)
58 2ysl_A Tripartite motif-contai 98.9 4.2E-10 1.4E-14 90.5 4.4 46 2-52 22-69 (73)
59 2ea6_A Ring finger protein 4; 98.9 2.6E-10 8.9E-15 90.5 3.0 49 2-51 17-67 (69)
60 2yur_A Retinoblastoma-binding 98.9 5.3E-10 1.8E-14 90.3 4.9 45 2-51 17-63 (74)
61 2csy_A Zinc finger protein 183 98.9 6.5E-10 2.2E-14 91.4 4.0 44 2-51 17-60 (81)
62 1chc_A Equine herpes virus-1 r 98.9 5.3E-10 1.8E-14 88.5 3.2 47 1-52 6-52 (68)
63 2xeu_A Ring finger protein 4; 98.9 5.2E-10 1.8E-14 87.3 2.9 51 2-53 5-57 (64)
64 1z6u_A NP95-like ring finger p 98.9 9.6E-10 3.3E-14 101.4 5.0 47 2-53 80-126 (150)
65 1g25_A CDK-activating kinase a 98.9 1E-09 3.5E-14 86.2 4.2 50 2-52 5-55 (65)
66 3ztg_A E3 ubiquitin-protein li 98.8 9.9E-10 3.4E-14 92.6 3.3 45 2-51 15-61 (92)
67 2ysj_A Tripartite motif-contai 98.8 1.3E-09 4.3E-14 85.0 3.4 40 2-46 22-63 (63)
68 2ct2_A Tripartite motif protei 98.8 1.9E-09 6.6E-14 89.8 4.8 50 2-52 17-68 (88)
69 2y43_A E3 ubiquitin-protein li 98.8 1.6E-09 5.6E-14 92.6 4.4 45 2-52 24-69 (99)
70 2d8s_A Cellular modulator of i 98.8 1.9E-09 6.5E-14 88.1 4.5 55 1-58 16-76 (80)
71 2ckl_B Ubiquitin ligase protei 98.8 1.4E-09 4.9E-14 102.1 4.3 46 2-52 56-102 (165)
72 2egp_A Tripartite motif-contai 98.8 4.9E-10 1.7E-14 91.5 0.5 46 2-52 14-65 (79)
73 3l11_A E3 ubiquitin-protein li 98.8 6.8E-10 2.3E-14 97.7 1.2 46 2-52 17-62 (115)
74 2ecw_A Tripartite motif-contai 98.8 1.8E-09 6.3E-14 89.2 3.7 46 2-52 21-71 (85)
75 2ecv_A Tripartite motif-contai 98.8 2.1E-09 7.2E-14 88.8 3.9 46 2-52 21-71 (85)
76 2ckl_A Polycomb group ring fin 98.8 2.2E-09 7.7E-14 93.3 4.1 45 2-52 17-62 (108)
77 1e4u_A Transcriptional repress 98.8 2.4E-09 8.1E-14 87.2 3.1 54 2-56 13-66 (78)
78 2kr4_A Ubiquitin conjugation f 98.8 3.2E-09 1.1E-13 88.0 3.9 45 2-52 16-60 (85)
79 1jm7_A BRCA1, breast cancer ty 98.8 3.3E-09 1.1E-13 92.7 4.2 47 2-53 23-71 (112)
80 2ecj_A Tripartite motif-contai 98.8 2.4E-09 8.3E-14 81.8 2.8 40 2-46 17-58 (58)
81 1rmd_A RAG1; V(D)J recombinati 98.8 4.4E-09 1.5E-13 92.7 4.6 48 2-54 25-72 (116)
82 2kre_A Ubiquitin conjugation f 98.7 3.6E-09 1.2E-13 90.5 3.3 45 2-52 31-75 (100)
83 2ecn_A Ring finger protein 141 98.7 2.2E-09 7.7E-14 85.4 1.9 44 2-52 17-60 (70)
84 3hct_A TNF receptor-associated 98.7 4.4E-09 1.5E-13 93.0 3.4 46 2-52 20-65 (118)
85 1wgm_A Ubiquitin conjugation f 98.7 6.5E-09 2.2E-13 88.6 3.9 45 2-52 24-69 (98)
86 2iue_A Pactolus I-domain; memb 98.7 6.7E-08 2.3E-12 93.5 11.1 110 166-279 2-119 (212)
87 2c2l_A CHIP, carboxy terminus 98.7 6.3E-09 2.2E-13 105.9 3.5 46 2-52 210-255 (281)
88 3knv_A TNF receptor-associated 98.7 4E-09 1.4E-13 96.1 1.7 44 2-50 33-76 (141)
89 1jm7_B BARD1, BRCA1-associated 98.6 6.8E-09 2.3E-13 91.6 2.0 42 2-51 24-66 (117)
90 4ap4_A E3 ubiquitin ligase RNF 98.6 1.1E-08 3.6E-13 92.1 3.1 53 2-55 9-63 (133)
91 3fcs_B Integrin beta-3; beta p 98.6 1.6E-06 5.4E-11 98.4 21.3 265 124-430 84-405 (690)
92 2f42_A STIP1 homology and U-bo 98.6 1.5E-08 5.1E-13 95.4 3.7 46 2-52 108-153 (179)
93 3t3p_B Integrin beta-3; integr 98.6 5.4E-06 1.9E-10 88.8 23.0 266 124-430 84-405 (472)
94 3v4v_B Integrin beta-7; cell a 98.5 1.2E-05 4.2E-10 86.4 24.2 260 149-431 120-429 (503)
95 2yu4_A E3 SUMO-protein ligase 98.5 2.7E-08 9.2E-13 84.1 2.9 43 2-49 9-59 (94)
96 1bor_A Transcription factor PM 98.5 1.4E-08 4.6E-13 77.2 0.8 42 2-52 8-49 (56)
97 4ic3_A E3 ubiquitin-protein li 98.5 2.3E-08 8E-13 80.5 2.2 41 2-52 26-67 (74)
98 3vi3_B Integrin beta-1; beta p 98.5 1.6E-05 5.5E-10 84.6 23.2 245 164-430 119-414 (454)
99 4ap4_A E3 ubiquitin ligase RNF 98.4 5.4E-08 1.8E-12 87.4 2.6 51 2-53 74-126 (133)
100 2vje_A E3 ubiquitin-protein li 98.4 7.5E-08 2.5E-12 75.2 2.5 46 1-52 9-57 (64)
101 3hcs_A TNF receptor-associated 98.4 1E-07 3.4E-12 89.8 3.4 46 2-52 20-65 (170)
102 2vje_B MDM4 protein; proto-onc 98.4 1.1E-07 3.7E-12 74.0 2.6 46 1-52 8-56 (63)
103 3k6s_B Integrin beta-2; cell r 98.4 1.7E-06 5.9E-11 97.8 13.3 135 124-278 77-247 (687)
104 3htk_C E3 SUMO-protein ligase 98.4 9.3E-08 3.2E-12 94.3 2.6 46 2-52 183-232 (267)
105 2ecg_A Baculoviral IAP repeat- 98.3 1.6E-07 5.6E-12 75.7 2.5 41 2-52 27-68 (75)
106 3rag_A Uncharacterized protein 98.3 1.3E-06 4.5E-11 85.7 8.8 70 263-359 8-82 (242)
107 2yho_A E3 ubiquitin-protein li 98.2 3.7E-07 1.3E-11 74.4 1.6 41 2-52 20-61 (79)
108 2ea5_A Cell growth regulator w 98.1 1.7E-06 5.9E-11 68.2 3.9 42 2-53 17-59 (68)
109 2bay_A PRE-mRNA splicing facto 98.1 1.2E-06 4.1E-11 67.5 2.4 47 2-54 5-52 (61)
110 3k1l_B Fancl; UBC, ring, RWD, 98.1 6.1E-07 2.1E-11 91.2 0.5 50 2-51 310-372 (381)
111 1wim_A KIAA0161 protein; ring 98.0 1.8E-06 6.2E-11 72.7 3.2 46 2-49 7-61 (94)
112 1vyx_A ORF K3, K3RING; zinc-bi 98.0 2.9E-06 9.8E-11 65.1 2.8 46 1-51 7-58 (60)
113 3vk6_A E3 ubiquitin-protein li 97.7 2.6E-05 8.8E-10 64.8 4.0 48 3-54 4-51 (101)
114 2y1n_A E3 ubiquitin-protein li 97.5 4.4E-05 1.5E-09 80.1 3.7 37 18-54 345-381 (389)
115 3nw0_A Non-structural maintena 96.3 0.0027 9.3E-08 62.5 4.5 34 20-53 196-230 (238)
116 2ko5_A Ring finger protein Z; 94.3 0.035 1.2E-06 45.2 3.8 43 2-51 30-72 (99)
117 1weo_A Cellulose synthase, cat 89.9 0.31 1.1E-05 39.3 4.1 51 2-52 18-70 (93)
118 2lri_C Autoimmune regulator; Z 89.2 0.19 6.5E-06 38.7 2.4 43 2-49 14-59 (66)
119 2jun_A Midline-1; B-BOX, TRIM, 87.7 0.14 4.8E-06 42.9 0.8 31 2-35 5-36 (101)
120 2cs3_A Protein C14ORF4, MY039 79.5 0.68 2.3E-05 36.4 1.5 34 2-37 17-51 (93)
121 1wev_A Riken cDNA 1110020M19; 77.6 0.54 1.9E-05 38.4 0.4 52 1-52 17-75 (88)
122 1wd2_A Ariadne-1 protein homol 77.5 0.25 8.6E-06 37.3 -1.5 39 1-39 7-48 (60)
123 2yt5_A Metal-response element- 73.6 0.51 1.8E-05 36.1 -0.7 49 1-49 7-61 (66)
124 2ct7_A Ring finger protein 31; 73.0 0.54 1.8E-05 38.2 -0.8 44 3-46 28-73 (86)
125 2l5u_A Chromodomain-helicase-D 72.4 1.3 4.4E-05 33.4 1.3 44 1-49 12-58 (61)
126 2gmg_A Hypothetical protein PF 71.0 1.1 3.9E-05 37.4 0.8 33 18-56 68-100 (105)
127 1f62_A Transcription factor WS 70.2 1.9 6.6E-05 30.9 1.8 45 2-48 2-49 (51)
128 2k16_A Transcription initiatio 70.1 1.1 3.7E-05 35.2 0.5 47 2-50 20-69 (75)
129 1we9_A PHD finger family prote 69.5 0.93 3.2E-05 34.4 -0.1 47 2-49 8-58 (64)
130 3u5n_A E3 ubiquitin-protein li 68.9 1.1 3.7E-05 42.8 0.3 44 1-49 8-54 (207)
131 3lqh_A Histone-lysine N-methyl 68.8 1.3 4.5E-05 41.3 0.8 48 2-49 4-63 (183)
132 2ku3_A Bromodomain-containing 66.8 1.2 4.2E-05 34.7 0.1 49 1-49 17-66 (71)
133 3o36_A Transcription intermedi 66.7 1.3 4.6E-05 41.3 0.4 44 1-49 5-51 (184)
134 2lbm_A Transcriptional regulat 64.2 5.1 0.00018 35.6 3.7 43 1-48 64-116 (142)
135 3v43_A Histone acetyltransfera 64.1 5.8 0.0002 33.6 3.9 46 2-47 7-62 (112)
136 1mm2_A MI2-beta; PHD, zinc fin 63.8 1.2 4E-05 33.6 -0.5 43 2-49 11-56 (61)
137 3m62_A Ubiquitin conjugation f 63.0 5.2 0.00018 46.5 4.3 45 2-52 893-938 (968)
138 1xwh_A Autoimmune regulator; P 61.6 1.6 5.5E-05 33.4 -0.1 44 1-49 9-55 (66)
139 2kwj_A Zinc finger protein DPF 61.6 2.5 8.7E-05 36.1 1.1 46 1-46 2-58 (114)
140 2ro1_A Transcription intermedi 61.2 1.8 6E-05 40.7 0.0 44 1-49 3-49 (189)
141 2l43_A N-teminal domain from h 60.6 2 6.9E-05 34.9 0.3 49 1-49 26-75 (88)
142 1wil_A KIAA1045 protein; ring 57.1 7 0.00024 31.2 2.8 32 1-35 16-47 (89)
143 2yql_A PHD finger protein 21A; 55.4 1.4 4.7E-05 32.5 -1.4 43 1-48 10-55 (56)
144 1wem_A Death associated transc 54.9 2.6 9E-05 33.1 0.1 43 5-49 20-70 (76)
145 2jmo_A Parkin; IBR, E3 ligase, 53.9 1.5 5.2E-05 34.9 -1.5 16 22-37 55-70 (80)
146 2zet_C Melanophilin; complex, 53.6 6.8 0.00023 35.3 2.6 47 2-49 70-117 (153)
147 2lv9_A Histone-lysine N-methyl 53.1 3.5 0.00012 34.2 0.6 43 3-48 31-75 (98)
148 1fp0_A KAP-1 corepressor; PHD 52.6 6.4 0.00022 31.9 2.0 44 1-49 26-72 (88)
149 2puy_A PHD finger protein 21A; 52.1 1.8 6.2E-05 32.4 -1.3 44 1-49 6-52 (60)
150 2kgg_A Histone demethylase jar 51.4 4.5 0.00015 29.2 0.9 44 3-47 5-52 (52)
151 2ysm_A Myeloid/lymphoid or mix 51.0 4 0.00014 34.5 0.6 45 1-47 8-55 (111)
152 3i2d_A E3 SUMO-protein ligase 50.9 11 0.00039 38.8 4.1 46 2-51 251-299 (371)
153 3ql9_A Transcriptional regulat 50.9 12 0.0004 32.7 3.6 42 2-48 59-110 (129)
154 2e6r_A Jumonji/ARID domain-con 50.6 2.2 7.5E-05 35.0 -1.1 46 2-49 18-66 (92)
155 2ri7_A Nucleosome-remodeling f 49.0 4.2 0.00015 37.3 0.5 46 2-49 10-59 (174)
156 2e2a_A Protein (enzyme IIA); h 48.1 28 0.00096 29.1 5.4 29 499-527 24-52 (105)
157 1wep_A PHF8; structural genomi 47.6 14 0.00047 29.1 3.3 44 5-49 16-63 (79)
158 1zbd_B Rabphilin-3A; G protein 47.3 8.6 0.00029 33.8 2.2 48 2-49 57-107 (134)
159 2vpb_A Hpygo1, pygopus homolog 47.2 11 0.00038 28.6 2.5 31 2-33 10-41 (65)
160 3shb_A E3 ubiquitin-protein li 46.4 5 0.00017 31.7 0.4 44 3-48 29-76 (77)
161 3asl_A E3 ubiquitin-protein li 45.9 6.5 0.00022 30.4 1.0 45 3-49 21-69 (70)
162 3v43_A Histone acetyltransfera 45.8 6.3 0.00022 33.4 1.1 46 2-48 63-111 (112)
163 3k1s_A PTS system, cellobiose- 45.0 33 0.0011 28.9 5.4 29 499-527 26-54 (109)
164 2o35_A Hypothetical protein DU 44.9 7.6 0.00026 31.9 1.3 12 26-37 42-53 (105)
165 3fyb_A Protein of unknown func 44.8 7.7 0.00026 31.8 1.3 12 26-37 41-52 (104)
166 2xb1_A Pygopus homolog 2, B-ce 44.6 9.5 0.00033 32.0 2.0 47 2-49 5-61 (105)
167 3l8r_A PTCA, putative PTS syst 44.6 33 0.0011 29.4 5.4 29 499-527 41-69 (120)
168 4fo9_A E3 SUMO-protein ligase 43.8 18 0.0006 37.2 4.1 45 2-51 217-265 (360)
169 1wcr_A PTS system, N, N'-diace 42.9 29 0.00098 28.9 4.6 29 499-527 22-50 (103)
170 1wew_A DNA-binding family prot 42.9 5.4 0.00018 31.5 0.1 44 3-49 19-72 (78)
171 1z60_A TFIIH basal transcripti 39.1 14 0.00047 27.5 1.8 42 2-46 17-58 (59)
172 2e6s_A E3 ubiquitin-protein li 38.5 7.8 0.00027 30.5 0.4 45 2-48 28-76 (77)
173 1weu_A Inhibitor of growth fam 37.7 7.6 0.00026 31.7 0.2 43 3-49 39-85 (91)
174 2d8z_A Four and A half LIM dom 36.2 18 0.00063 27.1 2.3 39 2-54 7-45 (70)
175 1wyh_A SLIM 2, skeletal muscle 36.1 18 0.00063 27.3 2.3 41 2-54 7-47 (72)
176 2dar_A PDZ and LIM domain prot 35.8 13 0.00046 29.7 1.5 40 2-55 27-66 (90)
177 1wen_A Inhibitor of growth fam 33.7 9.1 0.00031 29.6 0.1 43 3-49 19-65 (71)
178 3o70_A PHD finger protein 13; 32.6 7.5 0.00026 29.8 -0.5 43 3-48 22-66 (68)
179 1nyp_A Pinch protein; LIM doma 32.5 22 0.00074 26.4 2.1 37 2-52 7-43 (66)
180 1x62_A C-terminal LIM domain p 32.1 12 0.00041 29.1 0.6 38 2-53 17-54 (79)
181 1x64_A Alpha-actinin-2 associa 31.9 19 0.00065 28.7 1.8 38 2-53 27-64 (89)
182 2vnf_A ING 4, P29ING4, inhibit 30.4 13 0.00046 27.6 0.5 41 5-48 14-58 (60)
183 2d8x_A Protein pinch; LIM doma 30.0 16 0.00054 27.5 1.0 40 2-55 7-46 (70)
184 1joc_A EEA1, early endosomal a 29.2 28 0.00096 30.0 2.5 31 2-33 71-101 (125)
185 2kwj_A Zinc finger protein DPF 28.7 5.9 0.0002 33.7 -1.9 48 2-51 60-110 (114)
186 2cu8_A Cysteine-rich protein 2 27.6 20 0.00068 27.5 1.1 39 2-53 11-49 (76)
187 3c6w_A P28ING5, inhibitor of g 27.3 10 0.00036 28.1 -0.5 41 5-48 13-57 (59)
188 1wig_A KIAA1808 protein; LIM d 27.1 31 0.0011 26.3 2.2 36 2-51 7-42 (73)
189 1vh6_A Flagellar protein FLIS; 27.0 1.6E+02 0.0056 25.8 7.2 33 494-526 32-64 (145)
190 1iml_A CRIP, cysteine rich int 26.3 29 0.00099 26.5 1.9 40 2-54 2-41 (76)
191 2ysm_A Myeloid/lymphoid or mix 26.0 11 0.00039 31.7 -0.6 46 2-49 56-104 (111)
192 2v6y_A AAA family ATPase, P60 25.9 2.4E+02 0.0081 22.1 8.5 61 492-552 8-68 (83)
193 2w2u_A Hypothetical P60 katani 25.6 2.4E+02 0.0083 22.1 8.2 61 492-552 16-76 (83)
194 3mzk_B Protein transport prote 25.1 1.2E+02 0.0043 31.9 7.1 54 498-554 359-412 (441)
195 2cur_A Skeletal muscle LIM-pro 23.7 21 0.00072 26.7 0.6 38 1-52 6-43 (69)
196 1y02_A CARP2, FYVE-ring finger 23.6 14 0.00047 31.8 -0.6 46 2-49 21-66 (120)
197 1x63_A Skeletal muscle LIM-pro 23.6 37 0.0013 26.3 2.1 40 2-53 17-56 (82)
198 2cor_A Pinch protein; LIM doma 23.6 31 0.0011 26.7 1.6 38 2-53 17-54 (79)
199 3t7l_A Zinc finger FYVE domain 23.5 44 0.0015 26.9 2.5 48 2-50 22-74 (90)
200 1x4k_A Skeletal muscle LIM-pro 23.3 30 0.001 26.0 1.4 41 2-54 7-47 (72)
201 3zyq_A Hepatocyte growth facto 23.1 35 0.0012 32.7 2.1 30 2-32 166-195 (226)
202 3dza_A Uncharacterized putativ 22.8 1E+02 0.0034 28.6 5.0 35 493-527 33-67 (191)
203 4gne_A Histone-lysine N-methyl 22.2 44 0.0015 28.0 2.3 42 1-49 16-62 (107)
204 2dlo_A Thyroid receptor-intera 22.1 24 0.0008 27.5 0.6 40 2-55 17-56 (81)
205 2cpt_A SKD1 protein, vacuolar 22.0 3.5E+02 0.012 22.7 9.0 60 494-553 17-77 (117)
206 2d8v_A Zinc finger FYVE domain 21.8 39 0.0013 25.6 1.7 28 3-36 11-39 (67)
207 1x4l_A Skeletal muscle LIM-pro 21.1 42 0.0014 25.2 1.9 43 2-55 7-50 (72)
208 1x6a_A LIMK-2, LIM domain kina 21.0 37 0.0013 26.2 1.6 36 2-51 17-52 (81)
209 1vfy_A Phosphatidylinositol-3- 21.0 54 0.0019 25.2 2.5 31 2-33 13-43 (73)
210 1wee_A PHD finger family prote 20.9 12 0.00042 28.8 -1.3 45 3-49 19-66 (72)
211 2jne_A Hypothetical protein YF 20.8 31 0.0011 28.2 1.0 40 2-52 34-73 (101)
212 1z2q_A LM5-1; membrane protein 20.3 52 0.0018 26.0 2.3 32 2-34 23-54 (84)
213 1io1_A Phase 1 flagellin; beta 20.2 1.2E+02 0.0042 31.5 5.8 69 508-577 26-95 (398)
214 2etd_A LEMA protein; bromodoma 20.2 3.1E+02 0.011 24.7 7.9 55 511-565 75-133 (171)
215 1wfk_A Zinc finger, FYVE domai 20.2 49 0.0017 26.6 2.1 49 2-51 11-65 (88)
216 2a20_A Regulating synaptic mem 20.1 7.6 0.00026 28.7 -2.4 46 1-48 10-59 (62)
No 1
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=100.00 E-value=3.6e-41 Score=369.08 Aligned_cols=328 Identities=22% Similarity=0.270 Sum_probs=273.6
Q ss_pred CCCCCceEEEEEeCCCCCC--c-cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEEcC----cccCHHHHHHHHHHHh
Q 043643 163 ADRAPIDLVTVLDVSGSMS--S-KLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFPL----QRMTDSGRENAIRAIN 235 (634)
Q Consensus 163 ~~r~p~dlv~VlD~SgSM~--g-kl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~pl----~~~t~~~~~~~~~~I~ 235 (634)
..++++|++||||+||||. + ||+.+|+++..+++.|.++||++||+|++.+..++|+ .+++..++..++..|+
T Consensus 73 ~~~~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p~t~~l~~~~~~~~~~l~~~I~ 152 (464)
T 4fx5_A 73 ASGSENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPTGGQLLRADYQSRAAAKEAVG 152 (464)
T ss_dssp ---CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEESSSSSCEECSHHHHHHHHHHHH
T ss_pred CCCCCceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEecCCcccccCCHHHHHHHHHHHH
Confidence 3468899999999999999 8 9999999999999999999999999999999999995 4567889999999999
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhcccccc
Q 043643 236 TLSSNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREA 315 (634)
Q Consensus 236 ~l~~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~ 315 (634)
.|.++|||+++.||..|++.|..+ ++..+.|||||||.++.+. ...+...+. +
T Consensus 153 ~L~~~GgT~l~~aL~~A~~~l~~~--~~~~~~IILLTDG~~~~~~----------------~~~l~~~~~---------a 205 (464)
T 4fx5_A 153 RLHANGGTAMGRWLAQAGRIFDTA--PSAIKHAILLTDGKDESET----------------PADLARAIQ---------S 205 (464)
T ss_dssp TCCCCSCCCHHHHHHHHHHHHTTC--TTSEEEEEEEESSCCTTSC----------------HHHHHHHHH---------H
T ss_pred cCCCCCCCcHHHHHHHHHHHHhcC--CCCCCEEEEEcCCCCCCCC----------------hHHHHHHHH---------H
Confidence 999999999999999999999753 3566889999999988531 122332221 1
Q ss_pred CCCCeeEEEEEccCCCChHHHHHHHhhcCCeEEEcCChhhHHHHHHHHhhccccceeeeeEEEEEecCCCeEEEEecCCC
Q 043643 316 GQPTFPVHTFGFGLEHDSEAMHAIADASGGTFSFIETLSILQDAFARCIGGLLSVVSQDVKLTIRSKSAGVRIGSIPSGR 395 (634)
Q Consensus 316 ~~~~i~I~t~G~G~~~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f~~~l~~l~s~va~~~~l~v~~~~~~v~i~~v~~~~ 395 (634)
...++.||+||||.++|...|+.||+.++|.|+++.+.++|.++|.+++..++++++++++|.+++ ++|+++..++...
T Consensus 206 ~~~~i~i~tiGiG~~~d~~~L~~IA~~tgG~~~~v~d~~~L~~~f~~i~~~~~s~~~~dv~l~l~~-~~g~~v~~v~~v~ 284 (464)
T 4fx5_A 206 SIGNFTADCRGIGEDWEPKELRKIADALLGTVGIIRDPATLAEDFREMTAKSMGKEVADVALRLWA-PKGATIRYVKQVS 284 (464)
T ss_dssp HTTTCEEEEEEESSSSCHHHHHHHHHHTTCCEEEESSGGGHHHHHHHHHHHHHTCCEEEEEEEEEC-CTTCEEEEEEEEE
T ss_pred hcCCCeEEEEEeCCccCHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhhchheeeeEEEEEe-CCCcEEEEEEeec
Confidence 246899999999999999999999999999999999999999999999999999999999999995 7899988875432
Q ss_pred ------CCcccc-cCCceeEEEcCCccCCcEEEEEEEEEcCCCCCCCCCCCCccceEEEEEEEecCCCCceeeeecceeE
Q 043643 396 ------YNSEVL-DEGQQAVIDIGNLYADEEKEFMVYLSIPVSSAEGEQRPECTALLDVFCTHKDSASMEIHQVEGEKVE 468 (634)
Q Consensus 396 ------~~~~~~-~~~~~~~i~lg~l~~~e~r~~lv~l~~p~~~~~~~~~~~~~~l~~v~~~Y~~~~~~~~~~~~~~~~~ 468 (634)
+..... .+++.+.|.+|+| +||+|+|+|+|.+|+...+. ...+++|+|+|.+|.+. . ......+.
T Consensus 285 P~~~~l~~~~~~~~~~~~~~v~lG~l-~~e~r~~lv~l~v~~~~~g~-----~~~~~~v~~~y~~~~~~-~-~~~~~~v~ 356 (464)
T 4fx5_A 285 PNLADLSGMRVPGDNPLTGDYPTGAW-GAESREYHICVEVEPGNIGQ-----EKLAGRVQLVAKDAGGA-T-LLGEGKIR 356 (464)
T ss_dssp SBCEECGGGCEECSSTTEEEEEEEEE-SSEEEEEEEEEECCCCCTTC-----EEEEEEEEEEEEETTEE-E-EEEEEEEE
T ss_pred ccccccCcccccCCCCcEEEEECCcC-CCCeEEEEEEEEcCCCCCCc-----eeEEEEEEEEEcCCCcc-c-cccccceE
Confidence 112222 3567899999999 99999999999999866541 13348999999999865 2 23444566
Q ss_pred EeCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Q 043643 469 IRRPEVLSTADKKVNLQVDRQRSRLLVAETIADAQRMAEVGDLESAQALLAERRSGLLS 527 (634)
Q Consensus 469 v~rp~~~~~~~~~~~~~V~~~~~r~~a~~~i~~a~~~a~~g~~~~A~~~L~~~~~~l~~ 527 (634)
+.++..... ...++++|+++..+..+++++++|+.++++||+++|.++|+.+.+.+.+
T Consensus 357 ~~~~~~~~~-~~~~~~~V~~~~~~~~~a~~~~~a~~~~~~gd~~~A~~~L~~A~~~~~~ 414 (464)
T 4fx5_A 357 AVWTEDTDL-STRINGRVAHYTGQAEMAAAIQEGLDAQAAGDLDTATARLGRAMDLAVE 414 (464)
T ss_dssp EEECSCHHH-HSCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEccccc-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 666554221 1347899999999999999999999999999999999999999988865
No 2
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=99.91 E-value=8.5e-24 Score=206.69 Aligned_cols=182 Identities=15% Similarity=0.158 Sum_probs=145.6
Q ss_pred CCCCCCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcC
Q 043643 162 DADRAPIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLG---SADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTL 237 (634)
Q Consensus 162 ~~~r~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~---~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l 237 (634)
...+.++||+||||.||||.+ +++.+|+++..+++.|. +++||+||+|++.+...++|+... ++..+.+.|+.+
T Consensus 8 ~~C~~~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~--~~~~~~~~i~~l 85 (202)
T 1ijb_A 8 FYCSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRK--RPSELRRIASQV 85 (202)
T ss_dssp CCBCSCEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTTCCC--CHHHHHHHHHTC
T ss_pred cCCCCcccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecCCCC--CHHHHHHHHHhC
Confidence 345568999999999999998 99999999999999997 578999999999999999998543 478899999999
Q ss_pred CCCCC--CcHHHHHHHHHHHH-HhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccc
Q 043643 238 SSNGG--TNIVEGLKKGARVL-EERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKRE 314 (634)
Q Consensus 238 ~~~Gg--T~i~~aL~~A~~~l-~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~ 314 (634)
...|| |+++.||..|++.+ .....++..+.|||||||.++.+.. .++..... .
T Consensus 86 ~~~gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~~~----------------~~~~~~a~--------~ 141 (202)
T 1ijb_A 86 KYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMS----------------RNFVRYVQ--------G 141 (202)
T ss_dssp CCCCBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGGGC----------------TTHHHHHH--------H
T ss_pred cCCCCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCccch----------------HHHHHHHH--------H
Confidence 87543 99999999998654 3222235667899999999874311 01211111 1
Q ss_pred cCCCCeeEEEEEccCCCChHHHHHHHhhc-CCeEEEcCChhhHHHHHHHHhhcccc
Q 043643 315 AGQPTFPVHTFGFGLEHDSEAMHAIADAS-GGTFSFIETLSILQDAFARCIGGLLS 369 (634)
Q Consensus 315 ~~~~~i~I~t~G~G~~~d~~~L~~iA~~t-gG~~~~i~~~~~l~~~f~~~l~~l~s 369 (634)
++..+|.||+||+|.+.|...|+.||..+ +|.+|++.++++|.+.|.+++..+..
T Consensus 142 l~~~gi~i~~igvG~~~~~~~L~~iA~~~~~~~~~~~~~~~~L~~~~~~i~~~iC~ 197 (202)
T 1ijb_A 142 LKKKKVIVIPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCD 197 (202)
T ss_dssp HHHTTEEEEEEEESTTSCHHHHHHHHHHCTTCCCEEESSGGGHHHHHHHHHHHHHH
T ss_pred HHHCCCEEEEEecCCcCCHHHHHHHhCCCCcccEEEeCCHHHHHHHHHHHHHHhhc
Confidence 23479999999999999999999999864 78899999999999999988776543
No 3
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.91 E-value=1.3e-23 Score=207.77 Aligned_cols=189 Identities=16% Similarity=0.257 Sum_probs=136.3
Q ss_pred CCCCCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCC
Q 043643 163 ADRAPIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLG---SADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLS 238 (634)
Q Consensus 163 ~~r~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~---~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~ 238 (634)
.++.|+||+||||.||||.+ +++.+|+++..+++.|. +++||+||+|++.+..++++......++..+...|+.+.
T Consensus 11 ~~~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 90 (223)
T 1q0p_A 11 DPSGSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEIN 90 (223)
T ss_dssp ----CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCC
T ss_pred cCCCceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceeeccccCCCCCHHHHHHHHHhcc
Confidence 34579999999999999999 99999999999987764 579999999999999999877555566788999999997
Q ss_pred C-----CCCCcHHHHHHHHHHHHHhhcc------CCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhh
Q 043643 239 S-----NGGTNIVEGLKKGARVLEERRE------RSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSS 307 (634)
Q Consensus 239 ~-----~GgT~i~~aL~~A~~~l~~~~~------~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~ 307 (634)
+ +|+|+++.||..|++.|..... ++..+.|||||||.++.+... ......+...
T Consensus 91 ~~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~---------------~~~~~~~~~~ 155 (223)
T 1q0p_A 91 YEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDP---------------ITVIDEIRDL 155 (223)
T ss_dssp TTSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCT---------------HHHHHHHHHH
T ss_pred cccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCCh---------------HHHHHHHHHH
Confidence 5 6999999999999999974322 245577999999999865321 1222222110
Q ss_pred h--hccccccCCCCeeEEEEEccCCCChHHHHHHHhhcCC--eEEEcCChhhHHHHHHHHhhc
Q 043643 308 I--CLSKREAGQPTFPVHTFGFGLEHDSEAMHAIADASGG--TFSFIETLSILQDAFARCIGG 366 (634)
Q Consensus 308 i--~~~~~~~~~~~i~I~t~G~G~~~d~~~L~~iA~~tgG--~~~~i~~~~~l~~~f~~~l~~ 366 (634)
. ...+...+..++.||+||||.+.+...|+.||..++| .||++.+.++|.++|.+++..
T Consensus 156 ~~~~~~~~~~~~~~i~i~~igvG~~~~~~~L~~iA~~~~G~~~~~~~~~~~~L~~~~~~i~~~ 218 (223)
T 1q0p_A 156 LYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDE 218 (223)
T ss_dssp TTCSCBTTBCCGGGEEEEEEECSSCCCHHHHHHHSCCCTTCCCEEETTC--------------
T ss_pred HhhhhhhhhcccCCcEEEEEEecCcCCHHHHHHHhcCCCCCceEEEcCCHHHHHHHHHHHhcc
Confidence 0 0000124567899999999999999999999999999 899999999999999988753
No 4
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=99.90 E-value=6.3e-23 Score=209.25 Aligned_cols=182 Identities=18% Similarity=0.243 Sum_probs=149.1
Q ss_pred CCCCceEEEEEeCCCCCCc-cH-HHHHHHHHHHHHhcC---CCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcC-
Q 043643 164 DRAPIDLVTVLDVSGSMSS-KL-PLLKRAVHFIIQNLG---SADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTL- 237 (634)
Q Consensus 164 ~r~p~dlv~VlD~SgSM~g-kl-~~~K~al~~li~~L~---~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l- 237 (634)
...++||+||||.||||.+ .+ +.+|.++..+++.|. +++||+||+|++.++.++||+.....++..+...|+.|
T Consensus 15 c~~~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~~~~~i~~l~ 94 (266)
T 4hqo_A 15 CNEQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLGSGQSIDKRQALSKVTELR 94 (266)
T ss_dssp ECCCEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEECTTSHHHHCHHHHHHHHHHHH
T ss_pred cCCceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEEecCCCCccCHHHHHHHHHHhh
Confidence 4578999999999999998 77 589999999999997 78999999999999999999865444578899999988
Q ss_pred ---CCCCCCcHHHHHHHHHHHHHhh-ccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhcccc
Q 043643 238 ---SSNGGTNIVEGLKKGARVLEER-RERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKR 313 (634)
Q Consensus 238 ---~~~GgT~i~~aL~~A~~~l~~~-~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~ 313 (634)
.++|+|+++.||..|.++|... ..++..+.|||||||.++.. .++...+.
T Consensus 95 ~~~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d~------------------~~~~~~a~-------- 148 (266)
T 4hqo_A 95 KTYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNSK------------------YRALEVAN-------- 148 (266)
T ss_dssp HHCCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSCH------------------HHHHHHHH--------
T ss_pred hccCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCCc------------------hHHHHHHH--------
Confidence 6899999999999999988764 23456678999999998721 12332222
Q ss_pred ccCCCCeeEEEEEccCCCChHHHHHHHhhc--C--CeEEEcCChhhHHHHHHHHhhccccce
Q 043643 314 EAGQPTFPVHTFGFGLEHDSEAMHAIADAS--G--GTFSFIETLSILQDAFARCIGGLLSVV 371 (634)
Q Consensus 314 ~~~~~~i~I~t~G~G~~~d~~~L~~iA~~t--g--G~~~~i~~~~~l~~~f~~~l~~l~s~v 371 (634)
.++..+|.||+||||.+.+..+|+.||..+ + +.||++.++++|.+.+..++..+...+
T Consensus 149 ~l~~~gi~i~~iGiG~~~~~~~L~~iA~~~~~~g~~~~~~~~d~~~L~~i~~~l~~~iC~~~ 210 (266)
T 4hqo_A 149 KLKQRNVRLAVIGIGQGINHQFNRLIAGCRPREPNCKFYSYADWNEAVALIKPFIAKVCTEV 210 (266)
T ss_dssp HHHHTTCEEEEEECSSSCCHHHHHHHHTCCTTCSSCTTEECSCHHHHHHHHHHHHCCCEEEE
T ss_pred HHHHCCCEEEEEecCcccCHHHHHHhhCCCCCCCCCCeEEecCHHHHHHHHHHHHhhhcccc
Confidence 123578999999999999999999999875 3 388999999999988888776665433
No 5
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=99.89 E-value=1.7e-22 Score=196.90 Aligned_cols=171 Identities=11% Similarity=0.157 Sum_probs=139.4
Q ss_pred CCCCCCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcC
Q 043643 162 DADRAPIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNL---GSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTL 237 (634)
Q Consensus 162 ~~~r~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L---~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l 237 (634)
.....++||+||||.||||.+ +++.+|+++..+++.| .+++||+||+|++.++.++|++.. .+++.+.+.|+.+
T Consensus 16 ~~~~~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~--~~~~~~~~~i~~l 93 (199)
T 3zqk_A 16 KRNSMVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFSEA--QSKGDILQRLREI 93 (199)
T ss_dssp ---CCCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEECTTSC--CCHHHHHHHHHHC
T ss_pred CCCCCCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEEecCCc--CCHHHHHHHHHhC
Confidence 456688999999999999998 9999999999999999 478999999999999999999843 4578899999999
Q ss_pred CCCC--CCcHHHHHHHHHHHHH-hhc--cCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccc
Q 043643 238 SSNG--GTNIVEGLKKGARVLE-ERR--ERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSK 312 (634)
Q Consensus 238 ~~~G--gT~i~~aL~~A~~~l~-~~~--~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~ 312 (634)
...| +|+++.||..|.+.+. ... .++..+.|||||||.++... . .
T Consensus 94 ~~~gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v------------------------~----~-- 143 (199)
T 3zqk_A 94 RYQGGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEI------------------------K----R-- 143 (199)
T ss_dssp CCCCCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCC------------------------C----C--
T ss_pred cCCCCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHH------------------------H----H--
Confidence 7655 4999999999998542 211 23456789999999865311 0 0
Q ss_pred cccCCCCeeEEEEEccCCCChHHHHHHHhhcCCeEEEcCChhhHHHHHHHHhhcccc
Q 043643 313 REAGQPTFPVHTFGFGLEHDSEAMHAIADASGGTFSFIETLSILQDAFARCIGGLLS 369 (634)
Q Consensus 313 ~~~~~~~i~I~t~G~G~~~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f~~~l~~l~s 369 (634)
...++.||+||+|.+.|...|+.||. . +.+|++.++++|.+.|.+++..+..
T Consensus 144 ---~~~~v~v~~iGiG~~~~~~~L~~iA~-~-~~~~~~~~~~~L~~~~~~l~~~~c~ 195 (199)
T 3zqk_A 144 ---LPGDIQVVPIGVGPNANVQELERIGW-P-NAPILIQDFETLPREAPDLVLQRCC 195 (199)
T ss_dssp ---CCTTEEEEEEEESTTCCHHHHHHHHT-T-SCCEEESCTTTHHHHHHHHHHHHHH
T ss_pred ---HhCCCEEEEEEcCCCCCHHHHHHHhC-C-CceEEeCCHHHHHHHHHHHHHhhcc
Confidence 12689999999999999999999998 4 4456999999999999998887654
No 6
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=2.6e-22 Score=197.87 Aligned_cols=172 Identities=21% Similarity=0.368 Sum_probs=137.6
Q ss_pred CCCCCCceEEEEEeCCCCCCc------cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHh
Q 043643 162 DADRAPIDLVTVLDVSGSMSS------KLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAIN 235 (634)
Q Consensus 162 ~~~r~p~dlv~VlD~SgSM~g------kl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~ 235 (634)
...+.+.|++||||+||||.+ +|+.+|+++..+++.+. +++++||+|++.+..++|++ .++..+...|+
T Consensus 6 ~~~~~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~~~~~~----~~~~~~~~~l~ 80 (218)
T 3ibs_A 6 AVKRKGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFTQLPIT----SDYISAKMFLE 80 (218)
T ss_dssp ----CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEEEEEEE----SCHHHHHHHHH
T ss_pred ccccCCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCceEeCCCC----CCHHHHHHHHH
Confidence 456789999999999999985 89999999999999986 89999999999999999988 35677888888
Q ss_pred cCCC----CCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhcc
Q 043643 236 TLSS----NGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLS 311 (634)
Q Consensus 236 ~l~~----~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~ 311 (634)
.+.+ +|+|+++.||..|.+.+... ++..+.|||||||.++.+. ......
T Consensus 81 ~l~~~~~~~g~T~l~~al~~a~~~l~~~--~~~~~~ivllTDG~~~~~~----------------~~~~~~--------- 133 (218)
T 3ibs_A 81 SISPSLISKQGTAIGEAINLATRSFTPQ--EGVGRAIIVITDGENHEGG----------------AVEAAK--------- 133 (218)
T ss_dssp TCCGGGCCSCSCCHHHHHHHHHTTSCSC--SSCCEEEEEEECCTTCCSC----------------HHHHHH---------
T ss_pred hcCcccCCCCCCcHHHHHHHHHHHHhhC--CCCCcEEEEEcCCCCCCCc----------------HHHHHH---------
Confidence 8866 69999999999999988654 3456789999999988541 112211
Q ss_pred ccccCCCCeeEEEEEccC-------------------------CCChHHHHHHHhhcCCeEEEcCChhhHHHHHHHHhhc
Q 043643 312 KREAGQPTFPVHTFGFGL-------------------------EHDSEAMHAIADASGGTFSFIETLSILQDAFARCIGG 366 (634)
Q Consensus 312 ~~~~~~~~i~I~t~G~G~-------------------------~~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f~~~l~~ 366 (634)
.++..++.||+||||. +.+...|+.||+.+||.|+++.+..+..+.|.+.+..
T Consensus 134 --~~~~~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~~~~~~~~~~~~i~~ 211 (218)
T 3ibs_A 134 --AAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNSNSAQKAISQEISK 211 (218)
T ss_dssp --HHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECSSSHHHHHHHHHHHH
T ss_pred --HHHhcCCEEEEEEecCCCCCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHhcCCEEEECCCChHHHHHHHHHHHH
Confidence 1235799999999998 6788999999999999999999855554555555554
Q ss_pred c
Q 043643 367 L 367 (634)
Q Consensus 367 l 367 (634)
+
T Consensus 212 l 212 (218)
T 3ibs_A 212 M 212 (218)
T ss_dssp H
T ss_pred h
Confidence 4
No 7
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=99.88 E-value=5.3e-22 Score=189.95 Aligned_cols=178 Identities=23% Similarity=0.264 Sum_probs=131.6
Q ss_pred CCCCCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCCCC
Q 043643 163 ADRAPIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQN-LGSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLSSN 240 (634)
Q Consensus 163 ~~r~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~-L~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~~~ 240 (634)
..+.|+||+||||.||||.+ ++. .+..+..++.. +.+++|++||+|++.+..++|++. +......+...+..+.++
T Consensus 2 ~c~~~~dvv~vlD~SgSM~~~~~~-~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~ 79 (182)
T 1shu_X 2 SCRRAFDLYFVLDKSGSVANNWIE-IYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTG-DRGKISKGLEDLKRVSPV 79 (182)
T ss_dssp CCBSCEEEEEEEECSGGGGGGHHH-HHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEEC-CHHHHHHHHHHHHTCCCC
T ss_pred CCCCceeEEEEEECCCCcccCHHH-HHHHHHHHHHHhcCCCceEEEEEeCCCceEEECCCC-CHHHHHHHHHhcccCCCC
Confidence 35679999999999999998 432 33333333333 457999999999999999999882 222233344444455689
Q ss_pred CCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCCe
Q 043643 241 GGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPTF 320 (634)
Q Consensus 241 GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i 320 (634)
|+|+++.||..|.+.+.....++..+.|||+|||.++.+. ......... ..+..++
T Consensus 80 g~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~~----------------~~~~~~~~~--------~~~~~~i 135 (182)
T 1shu_X 80 GETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLV----------------PSYAEKEAK--------ISRSLGA 135 (182)
T ss_dssp SCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTTH----------------HHHHHHHHH--------HHHHTTC
T ss_pred CCchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCCC----------------chhHHHHHH--------HHHhCCC
Confidence 9999999999999999876444566789999999987421 111121111 1235789
Q ss_pred eEEEEEccCCCChHHHHHHHhhcCCeEEEcCChhhHHHHHHHHhhcc
Q 043643 321 PVHTFGFGLEHDSEAMHAIADASGGTFSFIETLSILQDAFARCIGGL 367 (634)
Q Consensus 321 ~I~t~G~G~~~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f~~~l~~l 367 (634)
.||+||+| +.+...|+.||..++|.|+...+.++|.++|.++...+
T Consensus 136 ~i~~igvg-~~~~~~L~~ia~~~~~~~~~~~~~~~L~~~~~~i~~~i 181 (182)
T 1shu_X 136 SVYCVGVL-DFEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQS 181 (182)
T ss_dssp EEEEEECS-SCCHHHHHHHSSSGGGEEESSSTTHHHHHHHHHHHHTB
T ss_pred EEEEEeCC-cCCHHHHHHHhCCCCceEEccCCHHHHHHHHHHHHhcc
Confidence 99999999 67899999999999887776668999999998887654
No 8
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=99.88 E-value=1.1e-22 Score=197.19 Aligned_cols=179 Identities=18% Similarity=0.312 Sum_probs=143.1
Q ss_pred CCCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCCC-CC
Q 043643 165 RAPIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLG-SADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLSS-NG 241 (634)
Q Consensus 165 r~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~-~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~~-~G 241 (634)
..|+||+||||.||||.+ +++.+|+++..+++.|. +++|++||+|++.++.++|++.. .++..+...|+.+.. +|
T Consensus 3 ~~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~~~l~~~--~~~~~~~~~i~~l~~~~g 80 (194)
T 1mf7_A 3 QEDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKEF--QNNPNPRSLVKPITQLLG 80 (194)
T ss_dssp CCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEECHHHH--HHSCCHHHHHTTCCCCCS
T ss_pred CCCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEEEecCCc--CCHHHHHHHHHhCcCCCC
Confidence 368999999999999999 99999999999999996 57899999999999999998732 345678889999975 89
Q ss_pred CCcHHHHHHHHHHHHHh-hc--cCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCC
Q 043643 242 GTNIVEGLKKGARVLEE-RR--ERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQP 318 (634)
Q Consensus 242 gT~i~~aL~~A~~~l~~-~~--~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~ 318 (634)
+|+++.||..|.+.+.. .. .++..+.|||||||.++.... .+...+. .++..
T Consensus 81 ~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~-----------------~~~~~~~--------~~~~~ 135 (194)
T 1mf7_A 81 RTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPL-----------------GYEDVIP--------EADRE 135 (194)
T ss_dssp CBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSS-----------------CGGGTHH--------HHHHT
T ss_pred CchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCch-----------------hhHHHHH--------HHHHC
Confidence 99999999999975532 11 234567899999999872110 0111111 12347
Q ss_pred CeeEEEEEccCCCC----hHHHHHHHhhc-CCeEEEcCChhhHHHHHHHHhhccccc
Q 043643 319 TFPVHTFGFGLEHD----SEAMHAIADAS-GGTFSFIETLSILQDAFARCIGGLLSV 370 (634)
Q Consensus 319 ~i~I~t~G~G~~~d----~~~L~~iA~~t-gG~~~~i~~~~~l~~~f~~~l~~l~s~ 370 (634)
+|.||+||+|.+.+ ...|+.||..+ +|.||++.+.++|...|.++...+..+
T Consensus 136 gi~v~~igvG~~~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~l~~~~~~i~~~ic~i 192 (194)
T 1mf7_A 136 GVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREKIFCI 192 (194)
T ss_dssp TEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHHTT
T ss_pred CCEEEEEEecccccccccHHHHHHHhCCCCcccEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 89999999999876 78999999986 588999999999999999888777654
No 9
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=99.87 E-value=4e-22 Score=204.95 Aligned_cols=183 Identities=19% Similarity=0.235 Sum_probs=148.2
Q ss_pred CCCCCceEEEEEeCCCCCCc-cH-HHHHHHHHHHHHhcCC---CCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcC
Q 043643 163 ADRAPIDLVTVLDVSGSMSS-KL-PLLKRAVHFIIQNLGS---ADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTL 237 (634)
Q Consensus 163 ~~r~p~dlv~VlD~SgSM~g-kl-~~~K~al~~li~~L~~---~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l 237 (634)
....++|||||||.||||.+ .+ +.+|+++..+++.|.. ++||+||+|++.++.+++++.....++..+...|+.|
T Consensus 17 ~C~~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~l~~~i~~l 96 (281)
T 4hqf_A 17 VCNDEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSDASKNKEKALIIIKSL 96 (281)
T ss_dssp CSCSCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSSCSSCHHHHHHHHHHH
T ss_pred hCCCceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEccccCccCHHHHHHHHHHH
Confidence 44579999999999999998 55 9999999999999986 7899999999999999999976555678888888887
Q ss_pred C----CCCCCcHHHHHHHHHHHHHhhc-cCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccc
Q 043643 238 S----SNGGTNIVEGLKKGARVLEERR-ERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSK 312 (634)
Q Consensus 238 ~----~~GgT~i~~aL~~A~~~l~~~~-~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~ 312 (634)
. ++|+|+++.||..|.+.|.... .++..+.|||||||.++.+ .+....+.
T Consensus 97 ~~~~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d~------------------~~~~~~~~------- 151 (281)
T 4hqf_A 97 LSTNLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDSI------------------QDSLKESR------- 151 (281)
T ss_dssp HHTTGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSCH------------------HHHHHHHH-------
T ss_pred hhccCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCCc------------------HHHHHHHH-------
Confidence 5 5899999999999999887542 2345678999999998731 12222222
Q ss_pred cccCCCCeeEEEEEccCCCChHHHHHHHhhc--CC--eEEEcCChhhHHHHHHHHhhccccce
Q 043643 313 REAGQPTFPVHTFGFGLEHDSEAMHAIADAS--GG--TFSFIETLSILQDAFARCIGGLLSVV 371 (634)
Q Consensus 313 ~~~~~~~i~I~t~G~G~~~d~~~L~~iA~~t--gG--~~~~i~~~~~l~~~f~~~l~~l~s~v 371 (634)
.++..+|.||+||+|.+.+..+|+.||... +| .||++.+.++|...+..++..+...+
T Consensus 152 -~l~~~gv~i~~igiG~~~~~~~L~~iA~~~~~~g~~~~~~~~~~~~L~~~~~~l~~~iC~~v 213 (281)
T 4hqf_A 152 -KLSDRGVKIAVFGIGQGINVAFNRFLVGCHPSDGKCNLYADSAWENVKNVIGPFMKAVCVEV 213 (281)
T ss_dssp -HHHHTTCEEEEEEESSSCCHHHHHHHTTSCSSSSCCTTEEEECGGGHHHHHHHHHHHHHHHH
T ss_pred -HHHHCCCEEEEEeCCCccCHHHHHhhhCCCCCCCCCceEEecchhhhhcccCCcccccCCCc
Confidence 123578999999999999999999999873 54 78999999999988888776665543
No 10
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=99.87 E-value=1.3e-23 Score=202.73 Aligned_cols=181 Identities=18% Similarity=0.272 Sum_probs=138.4
Q ss_pred CCCCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhc-CCCCeEEEEEeCC-CcEEEEcCcccCHHHHHHHHHHHhcCCCC
Q 043643 164 DRAPIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNL-GSADRLSIVIFSS-VARRIFPLQRMTDSGRENAIRAINTLSSN 240 (634)
Q Consensus 164 ~r~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L-~~~drvsIV~Fs~-~a~~~~pl~~~t~~~~~~~~~~I~~l~~~ 240 (634)
.+.|.+++||||+||||.+ +++.+|+++..+++.+ .++++++||+|++ .+..++|++ .++..+...|+.+.++
T Consensus 2 ~~~~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~~----~~~~~~~~~i~~l~~~ 77 (189)
T 2x31_A 2 EMSDRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQVLLQPS----RSLTQTKRQLQGLPGG 77 (189)
T ss_dssp CSSCCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCCBCTTTC----SCHHHHHHHHHHCCCC
T ss_pred CCCCeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCceEecCCC----CCHHHHHHHHhcCCCC
Confidence 5789999999999999988 9999999999999888 8899999999996 677788877 3678889999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCCe
Q 043643 241 GGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPTF 320 (634)
Q Consensus 241 GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i 320 (634)
|+|+++.||..|++.+.....++..+.|||||||.++.+.... ...... ...+.......+..+|
T Consensus 78 g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~--------------~~~~~~-~~~~~~~~~~~~~~gi 142 (189)
T 2x31_A 78 GGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGT--------------ANRELA-GEQATKVARAIRASGM 142 (189)
T ss_dssp BCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHH--------------HHHGGG-TCCCEEEEECTGGGGS
T ss_pred CCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCcc--------------ccccch-hHHHHHHHHHHHHcCC
Confidence 9999999999999999875545567789999999998653210 000000 0001111112345679
Q ss_pred eEEEEEccCCCChHHHHHHHhhcCCeEEEcCChhhHHHHHHHHhhc
Q 043643 321 PVHTFGFGLEHDSEAMHAIADASGGTFSFIETLSILQDAFARCIGG 366 (634)
Q Consensus 321 ~I~t~G~G~~~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f~~~l~~ 366 (634)
.|++||+|.+ +...|+.||..++|.|+++++.. .+.|.+++..
T Consensus 143 ~v~~ig~g~~-~~~~L~~iA~~~~G~~~~~~~~~--~~~~~~~~~~ 185 (189)
T 2x31_A 143 PAVIIDTAMR-PNPALVDLARTMDAHYIALPRAT--AHKMADVLGA 185 (189)
T ss_dssp CCTHHHHHHS-SCSSSCSTTTEEEESSTTTHHHH--HHHHHHHHHH
T ss_pred eEEEEecCCC-CHHHHHHHHHhcCCeEEECCCcc--hHHHHHHHHH
Confidence 9999999976 77899999999999999986543 3344444443
No 11
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=99.87 E-value=5.5e-22 Score=196.79 Aligned_cols=178 Identities=16% Similarity=0.239 Sum_probs=140.9
Q ss_pred CCCCCceEEEEEeCCCCCCccHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCCC
Q 043643 163 ADRAPIDLVTVLDVSGSMSSKLPLLKRAVHFIIQNLG---SADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLSS 239 (634)
Q Consensus 163 ~~r~p~dlv~VlD~SgSM~gkl~~~K~al~~li~~L~---~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~~ 239 (634)
....++||+||||.||||. .++.+|+++..+++.|. +++|++||+|++.+..++|+... .++..+.+.|+.+.+
T Consensus 18 ~c~~~~div~vlD~SgSM~-~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l~~~--~~~~~~~~~i~~l~~ 94 (223)
T 2b2x_A 18 ECSTQLDIVIVLDGSNSIY-PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKY--SSTEEVLVAANKIVQ 94 (223)
T ss_dssp ----CEEEEEEEECSTTCC-CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECTTTC--CSHHHHHHHHTTCCC
T ss_pred cCCCcceEEEEEECCCChh-hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEecCCC--CCHHHHHHHHHhhhc
Confidence 4456899999999999998 68999999999999885 68999999999999999999643 457888999999876
Q ss_pred CCC--CcHHHHHHHHHHHH-Hhh--ccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccc
Q 043643 240 NGG--TNIVEGLKKGARVL-EER--RERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKRE 314 (634)
Q Consensus 240 ~Gg--T~i~~aL~~A~~~l-~~~--~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~ 314 (634)
.|| |+++.||..|.+.+ ... ..++..+.|||||||.++.+. .+...+. .
T Consensus 95 ~gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~~------------------~~~~~~~--------~ 148 (223)
T 2b2x_A 95 RGGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNY------------------RLKQVIQ--------D 148 (223)
T ss_dssp CCCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTGG------------------GHHHHHH--------H
T ss_pred cCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCc------------------cHHHHHH--------H
Confidence 554 99999999999874 321 123556789999999988532 1111111 1
Q ss_pred cCCCCeeEEEEEccCCCC---------hHHHHHHHhh-cCCeEEEcCChhhHHHHHHHHhhcccc
Q 043643 315 AGQPTFPVHTFGFGLEHD---------SEAMHAIADA-SGGTFSFIETLSILQDAFARCIGGLLS 369 (634)
Q Consensus 315 ~~~~~i~I~t~G~G~~~d---------~~~L~~iA~~-tgG~~~~i~~~~~l~~~f~~~l~~l~s 369 (634)
++..+|.||+||+|.+.+ ...|+.||.. ++|.||++.+.++|.++|..+...+.+
T Consensus 149 ~~~~gi~v~~igvG~~~~~~~~~~~~~~~~L~~iA~~p~~g~~~~~~~~~~L~~i~~~i~~~ic~ 213 (223)
T 2b2x_A 149 CEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKALGERIFA 213 (223)
T ss_dssp HHTTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGTEEEESSTTGGGGGHHHHHTTTC-
T ss_pred HHHCCCEEEEEEecCccccccccchhHHHHHHHHhCCCchhcEEEeCCHHHHHHHHHHHHHhhcC
Confidence 235799999999998776 4799999998 899999999999999999888776654
No 12
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.87 E-value=7.6e-22 Score=189.35 Aligned_cols=175 Identities=19% Similarity=0.246 Sum_probs=133.6
Q ss_pred CCCCCceEEEEEeCCCCCCccHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcC---C
Q 043643 163 ADRAPIDLVTVLDVSGSMSSKLPLLKRAVHFIIQN-LGSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTL---S 238 (634)
Q Consensus 163 ~~r~p~dlv~VlD~SgSM~gkl~~~K~al~~li~~-L~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l---~ 238 (634)
..+.|+||+||||.||||.+.+..+++++..++.. +.+++|++||+|++.++.++|++. +++.+...|+.+ .
T Consensus 3 ~c~~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~l~~----~~~~~~~~i~~l~~~~ 78 (185)
T 3n2n_F 3 ACYGGFDLYFILDKSGSVLHHWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTE----DREQIRQGLEELQKVL 78 (185)
T ss_dssp CCBSEEEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEEC----CHHHHHHHHHHHHTCC
T ss_pred CCCCCeeEEEEEeCCCChhhhHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEEeccCC----CHHHHHHHHHHHhhhc
Confidence 46789999999999999987666666766666665 457899999999999999999983 556666666554 5
Q ss_pred CCCCCcHHHHHHHHHHHHHhh--ccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccC
Q 043643 239 SNGGTNIVEGLKKGARVLEER--RERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAG 316 (634)
Q Consensus 239 ~~GgT~i~~aL~~A~~~l~~~--~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~ 316 (634)
++|+|+++.||..|.+.+... ...+..+.|||||||.++.+.. ........ .++
T Consensus 79 ~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~~~----------------~~~~~~~~--------~~~ 134 (185)
T 3n2n_F 79 PGGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLF----------------FYSEREAN--------RSR 134 (185)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHHHH----------------HHHHHHHH--------HHH
T ss_pred CCCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCCcc----------------cchHHHHH--------HHH
Confidence 789999999999999987432 2224567899999999873210 01111111 123
Q ss_pred CCCeeEEEEEccCCCChHHHHHHHhhcCCeEEEcCC-hhhHHHHHHHHhhcc
Q 043643 317 QPTFPVHTFGFGLEHDSEAMHAIADASGGTFSFIET-LSILQDAFARCIGGL 367 (634)
Q Consensus 317 ~~~i~I~t~G~G~~~d~~~L~~iA~~tgG~~~~i~~-~~~l~~~f~~~l~~l 367 (634)
..++.||+||+| +.+...|+.||.. +|.+|++.+ .++|...|.+++..+
T Consensus 135 ~~gi~i~~igvg-~~~~~~L~~iA~~-~~~~~~~~~~~~~L~~~~~~i~~~i 184 (185)
T 3n2n_F 135 DLGAIVYAVGVK-DFNETQLARIADS-KDHVFPVNDGFQALQGIIHSILKKS 184 (185)
T ss_dssp HTTEEEEEEECS-SCCHHHHTTTSSS-GGGEEEHHHHHHHHHHHHHHHHHTB
T ss_pred HCCCEEEEEEec-cCCHHHHHHHhCC-CCCeEEeccHHHHHHHHHHHHHHhc
Confidence 578999999999 8899999999975 577888887 899999888877654
No 13
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=99.86 E-value=3.1e-22 Score=194.37 Aligned_cols=179 Identities=18% Similarity=0.281 Sum_probs=141.2
Q ss_pred CCCCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCC-CC
Q 043643 164 DRAPIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNL-GSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLS-SN 240 (634)
Q Consensus 164 ~r~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L-~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~-~~ 240 (634)
.+.++||+||||.||||.+ .+..+|.++..+++.| .+++|++||+|++.+..++|++. ..++..+.+.|+.+. ++
T Consensus 6 ~~~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~~~~~--~~~~~~~~~~i~~l~~~~ 83 (198)
T 1n3y_A 6 SRQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEE--FRRSSNPLSLLASVHQLQ 83 (198)
T ss_dssp --CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEECHHH--HHHCSSGGGGGTTCCCCC
T ss_pred CCCCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEEecCc--cCCHHHHHHHHhcCcCCC
Confidence 4578999999999999999 8999999999999999 68999999999999999999863 233456777888875 68
Q ss_pred CCCcHHHHHHHHHHHH-Hhhc--cCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCC
Q 043643 241 GGTNIVEGLKKGARVL-EERR--ERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQ 317 (634)
Q Consensus 241 GgT~i~~aL~~A~~~l-~~~~--~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~ 317 (634)
|+|+++.||..|.+.+ .... .++..+.|||||||.++.+.. ........ ++.
T Consensus 84 g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~--------------~~~~~~~~-----------~~~ 138 (198)
T 1n3y_A 84 GFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSL--------------DYKDVIPM-----------ADA 138 (198)
T ss_dssp SCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSS--------------CHHHHHHH-----------HHH
T ss_pred CCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCcc--------------cHHHHHHH-----------HHH
Confidence 9999999999999544 4321 234567899999999884321 11121111 234
Q ss_pred CCeeEEEEEccCCC----ChHHHHHHHhhcCCeE-EEcCChhhHHHHHHHHhhcccc
Q 043643 318 PTFPVHTFGFGLEH----DSEAMHAIADASGGTF-SFIETLSILQDAFARCIGGLLS 369 (634)
Q Consensus 318 ~~i~I~t~G~G~~~----d~~~L~~iA~~tgG~~-~~i~~~~~l~~~f~~~l~~l~s 369 (634)
.++.||+||+|.+. +...|+.||..++|.| |.+.+.++|..+|.++...+..
T Consensus 139 ~gi~i~~igvG~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~l~~~~~~i~~~ic~ 195 (198)
T 1n3y_A 139 AGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFA 195 (198)
T ss_dssp TTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEESSGGGGGGGHHHHHHHHHT
T ss_pred CCCEEEEEEccccccccccHHHHHHHHcCCCcccEEEeCCHHHHHHHHHHHHhheec
Confidence 78999999999877 6899999999999987 8889999999999888776643
No 14
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=99.86 E-value=1.7e-21 Score=189.93 Aligned_cols=176 Identities=17% Similarity=0.229 Sum_probs=138.3
Q ss_pred CCCceEEEEEeCCCCCCccHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCCCC-
Q 043643 165 RAPIDLVTVLDVSGSMSSKLPLLKRAVHFIIQNLG---SADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLSSN- 240 (634)
Q Consensus 165 r~p~dlv~VlD~SgSM~gkl~~~K~al~~li~~L~---~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~~~- 240 (634)
..++|||||||.||||. .++.+|+++..+++.|. +++|++||+|++.++.++||+.. .++..+.+.|+.+.+.
T Consensus 4 ~~~~div~vlD~SgSm~-~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~~~--~~~~~~~~~i~~l~~~~ 80 (200)
T 1v7p_C 4 PSLIDVVVVCDESNSIY-PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTY--KTKEEMIVATSQTSQYG 80 (200)
T ss_dssp --CEEEEEEEECCTTCC-CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTTTC--SSHHHHHHHHHHCCCCC
T ss_pred CCcccEEEEEECCCCcc-cHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCCCc--CCHHHHHHHHHhhhccC
Confidence 35899999999999998 68999999999999986 68999999999999999999843 4578899999999865
Q ss_pred C-CCcHHHHHHHHHHH-HHhh--ccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccC
Q 043643 241 G-GTNIVEGLKKGARV-LEER--RERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAG 316 (634)
Q Consensus 241 G-gT~i~~aL~~A~~~-l~~~--~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~ 316 (634)
| +|+++.||..|.+. +... ..++..+.|||||||.++.+. .+..... .++
T Consensus 81 G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~------------------~~~~~~~--------~~~ 134 (200)
T 1v7p_C 81 GDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGS------------------MLKAVID--------QCN 134 (200)
T ss_dssp CSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGG------------------GHHHHHH--------HHH
T ss_pred CCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcc------------------cHHHHHH--------HHH
Confidence 4 59999999999996 4332 123556789999999987431 1111111 123
Q ss_pred CCCeeEEEEEcc-----CCCC----hHHHHHHHhhcCCeE-EEcCChhhHHHHHHHHhhcccc
Q 043643 317 QPTFPVHTFGFG-----LEHD----SEAMHAIADASGGTF-SFIETLSILQDAFARCIGGLLS 369 (634)
Q Consensus 317 ~~~i~I~t~G~G-----~~~d----~~~L~~iA~~tgG~~-~~i~~~~~l~~~f~~~l~~l~s 369 (634)
..+|.||+||+| .+.+ ...|+.||..++|.| |.+.+.++|...|..+...+..
T Consensus 135 ~~gi~i~~igvg~~~~~~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~l~~i~~~i~~~ic~ 197 (200)
T 1v7p_C 135 HDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQIFS 197 (200)
T ss_dssp HTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGGGHHHHHHHHHHHHT
T ss_pred HCCCEEEEEEecccccccccchhhHHHHHHHHhCCccHhcEEEcCCHHHHHHHHHHHHhhhcC
Confidence 479999999994 4555 567999999998875 6789999999999888776643
No 15
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.86 E-value=8.6e-22 Score=193.90 Aligned_cols=177 Identities=15% Similarity=0.215 Sum_probs=139.1
Q ss_pred CCCCceEEEEEeCCCCCCccHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCCCC
Q 043643 164 DRAPIDLVTVLDVSGSMSSKLPLLKRAVHFIIQNLG---SADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLSSN 240 (634)
Q Consensus 164 ~r~p~dlv~VlD~SgSM~gkl~~~K~al~~li~~L~---~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~~~ 240 (634)
.+.++||+||||.||||. .++.+|+++..+++.|. +++|++||+|++.+..++|+... .++..+.+.|+.+.+.
T Consensus 4 C~~~~div~vlD~SgSm~-~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l~~~--~~~~~~~~~i~~l~~~ 80 (213)
T 1pt6_A 4 CSTQLDIVIVLDGSNSIY-PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKY--SSTEEVLVAAKKIVQR 80 (213)
T ss_dssp ---CEEEEEEEECCTTCC-CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECTTTC--SSHHHHHHHHHTCCCC
T ss_pred CCCCccEEEEEECCCChh-hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEecccc--CCHHHHHHHHHhccCC
Confidence 446899999999999998 68999999999999885 78999999999999999999643 4577889999998765
Q ss_pred C--CCcHHHHHHHHHHHH-Hhh--ccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhcccccc
Q 043643 241 G--GTNIVEGLKKGARVL-EER--RERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREA 315 (634)
Q Consensus 241 G--gT~i~~aL~~A~~~l-~~~--~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~ 315 (634)
| +|+++.||..|.+.+ ... ..++..+.|||||||.++.+. .+...+. .+
T Consensus 81 ~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~------------------~~~~~~~--------~~ 134 (213)
T 1pt6_A 81 GGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDNH------------------RLKKVIQ--------DC 134 (213)
T ss_dssp CCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCSH------------------HHHHHHH--------HH
T ss_pred CCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCc------------------cHHHHHH--------HH
Confidence 4 489999999999874 321 124566789999999988531 1222211 12
Q ss_pred CCCCeeEEEEEccCCCC---------hHHHHHHHhh-cCCeEEEcCChhhHHHHHHHHhhcccc
Q 043643 316 GQPTFPVHTFGFGLEHD---------SEAMHAIADA-SGGTFSFIETLSILQDAFARCIGGLLS 369 (634)
Q Consensus 316 ~~~~i~I~t~G~G~~~d---------~~~L~~iA~~-tgG~~~~i~~~~~l~~~f~~~l~~l~s 369 (634)
+..++.||+||+|.+.+ ...|+.||.. ++|.||++.+.++|.+.|..+...+..
T Consensus 135 ~~~gi~i~~igig~~~~~~~~~~~~~~~~L~~iA~~~~~g~~~~~~~~~~l~~i~~~l~~~i~~ 198 (213)
T 1pt6_A 135 EDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERIFA 198 (213)
T ss_dssp HHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHTC
T ss_pred HHCCCEEEEEEeccccccccccchhhHHHHHHHhCCCchhcEEEeCCHHHHHHHHHHHHHhhee
Confidence 34789999999997654 3789999998 689999999999999888887665543
No 16
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=99.86 E-value=2.3e-21 Score=225.43 Aligned_cols=191 Identities=17% Similarity=0.247 Sum_probs=154.4
Q ss_pred CCCCCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCC
Q 043643 163 ADRAPIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLG---SADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLS 238 (634)
Q Consensus 163 ~~r~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~---~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~ 238 (634)
..+.++|||||||.||||.+ +++.+|+++..+++.|. ..+||+||+|++.+..++|++..+..+++.++++|+.|.
T Consensus 239 ~~~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~~~i~~l~ 318 (741)
T 3hrz_D 239 DPSGSMNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEIN 318 (741)
T ss_dssp CTTCEEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHTTCC
T ss_pred CCCCceeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeEeecccCCcCHHHHHHHHHhcc
Confidence 35668999999999999999 99999999999999886 469999999999999999999776678899999999998
Q ss_pred -----CCCCCcHHHHHHHHHHHHHhh------ccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchh-
Q 043643 239 -----SNGGTNIVEGLKKGARVLEER------RERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPS- 306 (634)
Q Consensus 239 -----~~GgT~i~~aL~~A~~~l~~~------~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~- 306 (634)
.+|+|+++.||..|++.|... ...+..+.|||||||.+|.|... ......+..
T Consensus 319 ~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p---------------~~~~~~i~~~ 383 (741)
T 3hrz_D 319 YEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDP---------------ITVIDEIRDL 383 (741)
T ss_dssp GGGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCT---------------HHHHHHHHHH
T ss_pred cccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCc---------------hHHHHHHHHH
Confidence 799999999999999999321 11234567999999999976421 111111110
Q ss_pred -hhhccccccCCCCeeEEEEEccCCCChHHHHHHHhhcCCe--EEEcCChhhHHHHHHHHhhccc
Q 043643 307 -SICLSKREAGQPTFPVHTFGFGLEHDSEAMHAIADASGGT--FSFIETLSILQDAFARCIGGLL 368 (634)
Q Consensus 307 -~i~~~~~~~~~~~i~I~t~G~G~~~d~~~L~~iA~~tgG~--~~~i~~~~~l~~~f~~~l~~l~ 368 (634)
.+...++.++..+|.||+||||.+.+...|+.||..++|. ||++.+.++|.++|.+++..+.
T Consensus 384 ~~~~~~a~~~~~~gi~i~~igvG~~~~~~~L~~ia~~~~g~~~~~~~~~~~~L~~~~~~l~~~~~ 448 (741)
T 3hrz_D 384 LYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQ 448 (741)
T ss_dssp TTCSSCTTCCCGGGEEEEEEECSSSCCHHHHHHHSCCCTTCCCEECBSSHHHHHHHHHHHHHHHS
T ss_pred hhcccccccccccCeeEEEEeCCCcCCHHHHHHHhcCCCCcceEEEeCCHHHHHHHHHHhhcccc
Confidence 1112222456789999999999999999999999999985 8999999999999999887654
No 17
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=99.86 E-value=3.4e-21 Score=214.40 Aligned_cols=186 Identities=15% Similarity=0.249 Sum_probs=150.7
Q ss_pred CCCCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCCC
Q 043643 164 DRAPIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNL---GSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLSS 239 (634)
Q Consensus 164 ~r~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L---~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~~ 239 (634)
+..++|||||||.||||.+ +++.+|+++..+++.| .+++|++||+|++.++.++|++.....+++.+.++|+.|.+
T Consensus 6 ~~~~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~ 85 (509)
T 2odp_A 6 RSGHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVLNDNSRDMTEVISSLENANY 85 (509)
T ss_dssp SSSEEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCG
T ss_pred CCCCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeEeccCCCCCCHHHHHHHHHhccc
Confidence 4578999999999999999 9999999999999998 78999999999999999999986555678999999999977
Q ss_pred C-----CCCcHHHHHHHHHHHHHhhccC---------CCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhch
Q 043643 240 N-----GGTNIVEGLKKGARVLEERRER---------SPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLP 305 (634)
Q Consensus 240 ~-----GgT~i~~aL~~A~~~l~~~~~~---------~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~ 305 (634)
. |||+++.||..|.+.|.....+ +..+.|||||||.++.+... ......+.
T Consensus 86 ~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~---------------~~~~~~~~ 150 (509)
T 2odp_A 86 KDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSP---------------KTAVDHIR 150 (509)
T ss_dssp GGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCT---------------HHHHHHHH
T ss_pred ccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCCh---------------hHHHHHHH
Confidence 5 8999999999999999553221 23467999999999865221 12222222
Q ss_pred hhhhccccccCCCCeeEEEEEccCC-CChHHHHHHHhhcCCe--EEEcCChhhHHHHHHHHhhc
Q 043643 306 SSICLSKREAGQPTFPVHTFGFGLE-HDSEAMHAIADASGGT--FSFIETLSILQDAFARCIGG 366 (634)
Q Consensus 306 ~~i~~~~~~~~~~~i~I~t~G~G~~-~d~~~L~~iA~~tgG~--~~~i~~~~~l~~~f~~~l~~ 366 (634)
..+.. ..++..++.||+||+|.+ .+...|+.||..++|. ||+++|.++|...|.+++..
T Consensus 151 ~~~~~--~~~~~~~i~i~~iGvG~~~~~~~~L~~iA~~~~G~~~~~~~~~~~~l~~~~~~i~~~ 212 (509)
T 2odp_A 151 EILNI--NQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHMLDV 212 (509)
T ss_dssp HHTTC--CSTTGGGEEEEEEEESSSCCCHHHHHHHSCCCTTCCCEEEESSHHHHHHHHHHHEEC
T ss_pred HHhhc--cccccCceEEEEEEcCCCcccHHHHHhhccCCCCceeeEEecCHHHHHHHHHhhhcc
Confidence 11110 012357899999999998 9999999999999998 99999999999999988653
No 18
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=99.85 E-value=8.8e-22 Score=188.57 Aligned_cols=165 Identities=16% Similarity=0.222 Sum_probs=131.2
Q ss_pred CceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcCC-CCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCCC-CCCC
Q 043643 167 PIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLGS-ADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLSS-NGGT 243 (634)
Q Consensus 167 p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~~-~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~~-~GgT 243 (634)
|+||+||||.||||.+ +++.+|+++..+++.|.+ ++|++||+|++.++.++||+.. .++..+...++.+.. +|+|
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~~~l~~~--~~~~~~~~~~~~i~~~~g~T 79 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDY--VKRKDPDALLKHVKHMLLLT 79 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEEECHHHH--HHHCCHHHHHTTCCCCCBCC
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEEEcCccc--CCHHHHHHHHHhcccCCCCC
Confidence 7899999999999999 999999999999999965 4699999999999999998843 233455666777654 6899
Q ss_pred cHHHHHHHHHHH-HHhh--ccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCCe
Q 043643 244 NIVEGLKKGARV-LEER--RERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPTF 320 (634)
Q Consensus 244 ~i~~aL~~A~~~-l~~~--~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i 320 (634)
+++.||..|.+. +... ..++..+.|||||||.++.+... . +..++
T Consensus 80 ~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~~----------------------~----------~~~~i 127 (179)
T 1mjn_A 80 NTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNI----------------------D----------AAKDI 127 (179)
T ss_dssp CHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSCC----------------------G----------GGTTS
T ss_pred hHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCcch----------------------H----------HHCCC
Confidence 999999999964 4322 12345678999999998854210 0 13589
Q ss_pred eEEEEEccCCCCh----HHHHHHHhhcCCe-EEEcCChhhHHHHHHHHhh
Q 043643 321 PVHTFGFGLEHDS----EAMHAIADASGGT-FSFIETLSILQDAFARCIG 365 (634)
Q Consensus 321 ~I~t~G~G~~~d~----~~L~~iA~~tgG~-~~~i~~~~~l~~~f~~~l~ 365 (634)
.||+||+|.+.+. ..|+.||..++|. +|++.++++|...|.++..
T Consensus 128 ~i~~igvG~~~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~L~~i~~~i~~ 177 (179)
T 1mjn_A 128 IRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLCTELQK 177 (179)
T ss_dssp EEEEEEESGGGCSHHHHHTTGGGSCSCHHHHEEEESSGGGSCCHHHHHHH
T ss_pred EEEEEEccccccccccHHHHHHHhCCccHhcEEEeCCHHHHHHHHHHHHh
Confidence 9999999988773 7899999988774 6889999999888877654
No 19
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=99.84 E-value=2.8e-20 Score=179.44 Aligned_cols=164 Identities=16% Similarity=0.275 Sum_probs=132.1
Q ss_pred CCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcCC---CCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCCC-C
Q 043643 166 APIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLGS---ADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLSS-N 240 (634)
Q Consensus 166 ~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~~---~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~~-~ 240 (634)
.|+||+||||.||||.+ +++.+|+++..+++.+.. .+|++||+|++.+..++|+... .+++.+.++|+.+.. +
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~--~~~~~~~~~i~~l~~~~ 81 (189)
T 1atz_A 4 QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNVV--PEKAHLLSLVDVMQREG 81 (189)
T ss_dssp CCEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTCC--CCHHHHHHHHHTCCCCC
T ss_pred CceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEecCCC--CCHHHHHHHHHhCcCCC
Confidence 68999999999999998 999999999999999863 4799999999999999999633 457889999999975 7
Q ss_pred CCCcHHHHHHHHHHHHHhhc---cCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCC
Q 043643 241 GGTNIVEGLKKGARVLEERR---ERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQ 317 (634)
Q Consensus 241 GgT~i~~aL~~A~~~l~~~~---~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~ 317 (634)
|+|+++.||..|.+.+.... .++..+.|||||||.++... ...... ++.
T Consensus 82 g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~~~-----------------~~~~~~-----------~~~ 133 (189)
T 1atz_A 82 GPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDSV-----------------DAAADA-----------ARS 133 (189)
T ss_dssp CCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSSCC-----------------HHHHHH-----------HHH
T ss_pred CcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCchH-----------------HHHHHH-----------HHH
Confidence 89999999999999986532 12334568999999775321 111111 224
Q ss_pred CCeeEEEEEccCCCChHHHHHHHhhcCC-eEEEcCChhhHHHH
Q 043643 318 PTFPVHTFGFGLEHDSEAMHAIADASGG-TFSFIETLSILQDA 359 (634)
Q Consensus 318 ~~i~I~t~G~G~~~d~~~L~~iA~~tgG-~~~~i~~~~~l~~~ 359 (634)
.++.||+||+|.+.+...|+.||..+++ .++.+.+.+++...
T Consensus 134 ~gi~v~~igvG~~~~~~~L~~iA~~~~~~~~~~~~~~~~~~~l 176 (189)
T 1atz_A 134 NRVTVFPIGIGDRYDAAQLRILAGPAGDSNVVKLQRIEDLPTM 176 (189)
T ss_dssp TTEEEEEEEESSSSCHHHHHHHTGGGGGGGCEEESSTTHHHHH
T ss_pred CCCEEEEEEcCCcCCHHHHHHHHCCCcccCEEEecChhhHHHH
Confidence 7899999999999999999999998875 46778887777654
No 20
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=99.84 E-value=1.2e-20 Score=209.20 Aligned_cols=187 Identities=17% Similarity=0.262 Sum_probs=147.1
Q ss_pred CceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcCC----
Q 043643 167 PIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLG---SADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTLS---- 238 (634)
Q Consensus 167 p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~---~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l~---- 238 (634)
|+|||||||.||||.+ +++.+|+++..+++.|. ..+|++||+|++.+..++++......+++.+.+.|+.+.
T Consensus 1 ~~div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 80 (497)
T 1rrk_A 1 SMNIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDH 80 (497)
T ss_dssp CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHHCCGGGS
T ss_pred CeeEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeeccccccccCHHHHHHHHHhCcCccc
Confidence 6899999999999998 99999999999998754 479999999999999999776444467888999999987
Q ss_pred -CCCCCcHHHHHHHHHHHHHhhcc------CCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhh--hh
Q 043643 239 -SNGGTNIVEGLKKGARVLEERRE------RSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSS--IC 309 (634)
Q Consensus 239 -~~GgT~i~~aL~~A~~~l~~~~~------~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~--i~ 309 (634)
.+|+|+++.||..|.+.+..... ++..+.|||||||.++.+... ....+.+... +.
T Consensus 81 ~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~---------------~~~~~~~~~~~~~~ 145 (497)
T 1rrk_A 81 KLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDP---------------ITVIDEIRDLLYIG 145 (497)
T ss_dssp CCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCT---------------HHHHHHHHHHTTCS
T ss_pred cccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCCh---------------hHHHHHHHHHhhhh
Confidence 46799999999999999943211 234567999999999875421 1221111111 11
Q ss_pred ccccccCCCCeeEEEEEccCCCChHHHHHHHhhcCC--eEEEcCChhhHHHHHHHHhhccc
Q 043643 310 LSKREAGQPTFPVHTFGFGLEHDSEAMHAIADASGG--TFSFIETLSILQDAFARCIGGLL 368 (634)
Q Consensus 310 ~~~~~~~~~~i~I~t~G~G~~~d~~~L~~iA~~tgG--~~~~i~~~~~l~~~f~~~l~~l~ 368 (634)
......+..++.|++||+|.+.+...|+.||..++| .||++++.++|.++|.+++....
T Consensus 146 ~~~~~~~~~~i~v~~igvG~~~~~~~L~~iA~~~~g~~~~~~~~~~~~l~~~~~~~i~~~~ 206 (497)
T 1rrk_A 146 KDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVCKVKDMECLEDVFYQMIDESQ 206 (497)
T ss_dssp SCC-CCCGGGEEEEEEECSSSCCHHHHHHHSCCCTTCCCEEETTCHHHHHHHHHHHSCGGG
T ss_pred cccccchhcCeeEEEecCCCccCHHHHHHHhcCCCCcceEEEeCCHHHHhhhhhhcccCCC
Confidence 111123455899999999999999999999999999 99999999999999999887654
No 21
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=99.83 E-value=3.2e-20 Score=177.50 Aligned_cols=151 Identities=19% Similarity=0.239 Sum_probs=112.4
Q ss_pred CCCCCCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcC
Q 043643 162 DADRAPIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLG---SADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTL 237 (634)
Q Consensus 162 ~~~r~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~---~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l 237 (634)
+....++|||||||.||||.+ +++.+|+++..+++.|. +.+|++||+|++.+..++|++.....+++.+.+.|+.+
T Consensus 12 ~~c~~~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~~l~~~~~~~~~~~~~~i~~l 91 (178)
T 2xgg_A 12 AMGTNQLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQSPNAVDKQLAAHAVLDM 91 (178)
T ss_dssp --CTTCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTSGGGSCHHHHHHHHHHC
T ss_pred ccCCCCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEEeCCCCCccCHHHHHHHHHhC
Confidence 345568999999999999998 99999999999999986 35899999999999999999865433688999999999
Q ss_pred C-CCCCCcHHHHHHHHHHHHHhh---ccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhcccc
Q 043643 238 S-SNGGTNIVEGLKKGARVLEER---RERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKR 313 (634)
Q Consensus 238 ~-~~GgT~i~~aL~~A~~~l~~~---~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~ 313 (634)
. .+|+|+++.||..|.+.+... ..++..+.|||||||.++.+ .++...+.
T Consensus 92 ~~~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~~------------------~~~~~~~~-------- 145 (178)
T 2xgg_A 92 PYKKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDSD------------------FRTVRAAK-------- 145 (178)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCHH------------------HHHSHHHH--------
T ss_pred CCCCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCCC------------------ccHHHHHH--------
Confidence 7 689999999999999987432 12355678999999998742 11222211
Q ss_pred ccCCCCeeEEEEEccCCCChHHHHH
Q 043643 314 EAGQPTFPVHTFGFGLEHDSEAMHA 338 (634)
Q Consensus 314 ~~~~~~i~I~t~G~G~~~d~~~L~~ 338 (634)
..+..+|.|++||+|.+.|..+|+.
T Consensus 146 ~l~~~gi~v~~igvG~~~~~~~l~~ 170 (178)
T 2xgg_A 146 EIRELGGIVTVLAVGHYVAAALVPR 170 (178)
T ss_dssp HHHHTTCEEEEEECC----------
T ss_pred HHHHCCCEEEEEEcCCcCCHHHHhc
Confidence 1234689999999999999888764
No 22
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=6.5e-18 Score=169.94 Aligned_cols=147 Identities=14% Similarity=0.213 Sum_probs=123.6
Q ss_pred EEEEEeCCCCCCc------cHHHHHHHHHHHHHh---cCCCCeEEEEEeCCC-cEEEEcCcccCHHHHHHHHHHHhcCCC
Q 043643 170 LVTVLDVSGSMSS------KLPLLKRAVHFIIQN---LGSADRLSIVIFSSV-ARRIFPLQRMTDSGRENAIRAINTLSS 239 (634)
Q Consensus 170 lv~VlD~SgSM~g------kl~~~K~al~~li~~---L~~~drvsIV~Fs~~-a~~~~pl~~~t~~~~~~~~~~I~~l~~ 239 (634)
+|||||+|+||.. ||+.+|.|+..+++. ++|.|+|+||+|.+. +.++.|++ .++..++..|+.|.+
T Consensus 6 tViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~plT----~D~~~il~aL~~l~~ 81 (268)
T 4b4t_W 6 TVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFT----AEFGKILAGLHDTQI 81 (268)
T ss_dssp EEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEEEEE----SCHHHHHHHHTTCCC
T ss_pred EEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceeccCCc----chHHHHHHHhhhcCc
Confidence 7999999999974 899999999999874 578999999999876 46677887 568889999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCC
Q 043643 240 NGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPT 319 (634)
Q Consensus 240 ~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~ 319 (634)
+|+|++..||..|+..|+.+..++...+|||++||..+. +..++..++. .+++.+
T Consensus 82 ~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~-----------------~~~~l~~lak--------~lkk~g 136 (268)
T 4b4t_W 82 EGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD-----------------SRDELIRLAK--------TLKKNN 136 (268)
T ss_dssp CSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSS-----------------CHHHHHHHHH--------HHHHHT
T ss_pred CCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCC-----------------CHHHHHHHHH--------HHHHcC
Confidence 999999999999999999888888888999999997552 2345555544 234679
Q ss_pred eeEEEEEccC-CCChHHHHHHHhhcCC
Q 043643 320 FPVHTFGFGL-EHDSEAMHAIADASGG 345 (634)
Q Consensus 320 i~I~t~G~G~-~~d~~~L~~iA~~tgG 345 (634)
|.|++||||. +++...|+.+++..+|
T Consensus 137 I~v~vIgFG~~~~n~~kLe~l~~~~Ng 163 (268)
T 4b4t_W 137 VAVDIINFGEIEQNTELLDEFIAAVNN 163 (268)
T ss_dssp EEEEEEEESSCCSSCCHHHHHHHHHCS
T ss_pred CEEEEEEeCCCccchHHHHHHHHHhcC
Confidence 9999999996 5788899999887755
No 23
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=99.72 E-value=8.7e-17 Score=155.30 Aligned_cols=161 Identities=15% Similarity=0.238 Sum_probs=119.5
Q ss_pred eEEEEEeCCCCCCc------cHHHHHHHHHHHHHh---cCCCCeEEEEEeCC-CcEEEEcCcccCHHHHHHHHHHHhcCC
Q 043643 169 DLVTVLDVSGSMSS------KLPLLKRAVHFIIQN---LGSADRLSIVIFSS-VARRIFPLQRMTDSGRENAIRAINTLS 238 (634)
Q Consensus 169 dlv~VlD~SgSM~g------kl~~~K~al~~li~~---L~~~drvsIV~Fs~-~a~~~~pl~~~t~~~~~~~~~~I~~l~ 238 (634)
.++||||+|+||.. ||+.+|.++..|+.. ..+.||+|||+|++ .+.++.|++ .+...+...|+.+.
T Consensus 4 ~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~plT----~d~~~i~~~L~~l~ 79 (192)
T 2x5n_A 4 ATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLT----RDYGKFLSAMHDLP 79 (192)
T ss_dssp EEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEEE----SCHHHHHHHHTTCC
T ss_pred EEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCCC----CCHHHHHHHHHcCC
Confidence 58999999999973 899999999887764 36899999999999 499999999 56889999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHhhccCCCCcEEEE-EeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCC
Q 043643 239 SNGGTNIVEGLKKGARVLEERRERSPVASIIL-LSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQ 317 (634)
Q Consensus 239 ~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IIL-lTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~ 317 (634)
++|+|+++.||..|.+.|+....++..+.||| ++|+. +. +..++..+.. .++.
T Consensus 80 ~~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~-~~-----------------~~~~~~~~a~--------~lk~ 133 (192)
T 2x5n_A 80 VRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPI-VE-----------------DEKNLIRLAK--------RMKK 133 (192)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCC-SS-----------------CHHHHHHHHH--------HHHH
T ss_pred CCCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCC-CC-----------------CchhHHHHHH--------HHHH
Confidence 99999999999999999987654444444554 44443 21 1233433322 2346
Q ss_pred CCeeEEEEEccCCC-ChHHHHHHHhhc----CCeEEEcCChh-hHHHHH
Q 043643 318 PTFPVHTFGFGLEH-DSEAMHAIADAS----GGTFSFIETLS-ILQDAF 360 (634)
Q Consensus 318 ~~i~I~t~G~G~~~-d~~~L~~iA~~t----gG~~~~i~~~~-~l~~~f 360 (634)
.+|.|++||||.+. +.. |+.+|+.+ ++.|..++... -|.+.+
T Consensus 134 ~gi~v~~Ig~G~~~~~~~-l~~la~~~n~~~~s~~~~~~~~~~~l~d~~ 181 (192)
T 2x5n_A 134 NNVAIDIIHIGELQNESA-LQHFIDAANSSDSCHLVSIPPSPQLLSDLV 181 (192)
T ss_dssp TTEEEEEEEESCC---CH-HHHHHHHHCSTTCCEEEEECCCSSCHHHHH
T ss_pred CCCEEEEEEeCCCCccHH-HHHHHHhccCCCceEEEEecCcchhHHHHH
Confidence 89999999999764 556 99999984 34565565544 344443
No 24
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=99.71 E-value=1.7e-18 Score=207.05 Aligned_cols=182 Identities=19% Similarity=0.325 Sum_probs=142.0
Q ss_pred CCCCCCceEEEEEeCCCCCCc-cHHHHHHHHHHHHHhcCCC-CeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcC-C
Q 043643 162 DADRAPIDLVTVLDVSGSMSS-KLPLLKRAVHFIIQNLGSA-DRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTL-S 238 (634)
Q Consensus 162 ~~~r~p~dlv~VlD~SgSM~g-kl~~~K~al~~li~~L~~~-drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l-~ 238 (634)
...+.++||+||||.||||.+ +++.+|+++..+++.|.+. +||+||+|++.++.++||+.. .++..+..+|+.+ .
T Consensus 125 ~C~~~~~DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~~~lt~~--~~~~~l~~ai~~i~~ 202 (1095)
T 3k6s_A 125 ECPRQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEF--RRSSNPLSLLASVHQ 202 (1095)
T ss_dssp CCCCCCEEEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEEECSHHH--HSCSCGGGGTTTCCC
T ss_pred cCCCCCccEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEEecCccc--CCHHHHHHHHhhhhc
Confidence 344668999999999999999 9999999999999999865 899999999999999999832 2345667778887 5
Q ss_pred CCCCCcHHHHHHHHHHHHHhh---ccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhcccccc
Q 043643 239 SNGGTNIVEGLKKGARVLEER---RERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREA 315 (634)
Q Consensus 239 ~~GgT~i~~aL~~A~~~l~~~---~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~ 315 (634)
.+|+|+++.||..|++.+... ..++..+.|||||||.++.... .+...+. .+
T Consensus 203 ~gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~~-----------------~~~~~a~--------~~ 257 (1095)
T 3k6s_A 203 LQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSL-----------------DYKDVIP--------MA 257 (1095)
T ss_dssp CCSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCSS-----------------CHHHHHH--------HH
T ss_pred ccCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCch-----------------hHHHHHH--------HH
Confidence 678999999999998866321 1234567899999999863211 1111111 12
Q ss_pred CCCCeeEEEEEccCC----CChHHHHHHHhhcCC-eEEEcCChhhHHHHHHHHhhccccc
Q 043643 316 GQPTFPVHTFGFGLE----HDSEAMHAIADASGG-TFSFIETLSILQDAFARCIGGLLSV 370 (634)
Q Consensus 316 ~~~~i~I~t~G~G~~----~d~~~L~~iA~~tgG-~~~~i~~~~~l~~~f~~~l~~l~s~ 370 (634)
+..+|.||+||+|.+ .+...|+.||..++| .+|.+++.++|.++|.++...+..+
T Consensus 258 r~~GI~i~aIGVG~~~~~~~d~~eL~~IAs~p~g~~vf~v~d~~~L~~i~~~L~~~Ic~i 317 (1095)
T 3k6s_A 258 DAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFAI 317 (1095)
T ss_dssp HHHCEEECCEEBSSGGGSTTSSHHHHTTSCSSTTTSCCCBSCSGGGGSSTTTHHHHHHTC
T ss_pred HHCCCEEEEEecccccccccCHHHHHHHHcCCCCceEEEcCCHHHHHHHHHHhhhhhhcc
Confidence 346999999999987 588999999998876 7788899998888887777666554
No 25
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=99.70 E-value=4.1e-15 Score=172.34 Aligned_cols=340 Identities=14% Similarity=0.091 Sum_probs=217.1
Q ss_pred EEEeCCCCCCCCCCCCceEEEEEeCCCCCCc--cHHHHHHHHHHHHHhcCC---CCeEEEEEeCCCcEEEEcCc------
Q 043643 152 LRVCAPSLPNDADRAPIDLVTVLDVSGSMSS--KLPLLKRAVHFIIQNLGS---ADRLSIVIFSSVARRIFPLQ------ 220 (634)
Q Consensus 152 v~~~ap~~~~~~~r~p~dlv~VlD~SgSM~g--kl~~~K~al~~li~~L~~---~drvsIV~Fs~~a~~~~pl~------ 220 (634)
+++.+|.........|.-++||||+|.++.. .++.+++++...++.|++ +.+||||+|++.+...- +.
T Consensus 172 vEy~~p~~y~~~~p~pp~yvFvIDvs~~av~~g~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~-l~~~~~g~ 250 (810)
T 1pcx_A 172 MEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFK-IPLDSENN 250 (810)
T ss_dssp EEEECCGGGCSSCCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEE-CCCGGGC-
T ss_pred EEEEcCchhccCCCCCcEEEEEEECChHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEe-cCccccCc
Confidence 4555554333344567889999999988743 688999999999999976 57999999998765431 11
Q ss_pred ----------------------------ccCHHHHHHHHHHHhcCC------CCCCCcHHHHHHHHHHHHHhhccCCCCc
Q 043643 221 ----------------------------RMTDSGRENAIRAINTLS------SNGGTNIVEGLKKGARVLEERRERSPVA 266 (634)
Q Consensus 221 ----------------------------~~t~~~~~~~~~~I~~l~------~~GgT~i~~aL~~A~~~l~~~~~~~~~~ 266 (634)
++. +.+..+...|+.|. ..+.+.++.||..|..+|+.. ..
T Consensus 251 k~~~~q~~mlvv~dl~d~f~P~~~~~Lv~l~-e~~~~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~~-----GG 324 (810)
T 1pcx_A 251 EESADQINMMDIADLEEPFLPRPNSMVVSLK-ACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV-----GG 324 (810)
T ss_dssp ------CEEECCCCTTCC-----TTTSEETT-TTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTT-----CE
T ss_pred cccccchhhccccccccccCCCcccccccHH-HHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhc-----CC
Confidence 011 22444444454432 256899999999999999743 25
Q ss_pred EEEEEeCCCCCCCCCCCcccccccCCCCCCHHH-HHhhchhhhhccccccCCCCeeEEEEEccCC-CChHHHHHHHhhcC
Q 043643 267 SIILLSDGQDTHNVLRNSYTQDEASSIPSNELA-YLNLLPSSICLSKREAGQPTFPVHTFGFGLE-HDSEAMHAIADASG 344 (634)
Q Consensus 267 ~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~-~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~-~d~~~L~~iA~~tg 344 (634)
.|++++.|.++.|.+....+.+....+...+.. +..-..+.++..+.++...++.|+.|.++.+ .|-..|..++..||
T Consensus 325 rI~~F~sg~pt~GpG~l~~r~~~~~~~~~ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TG 404 (810)
T 1pcx_A 325 KIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTA 404 (810)
T ss_dssp EEEEEESSCCCSSTTCCCC--------------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTT
T ss_pred EEEEEecCCCCCCCCcccccccccccCcccchhhhcccchHHHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCC
Confidence 699999999999876542222211111110000 1100011122223345567899999988765 57889999999999
Q ss_pred CeEEEcCChhh--H--HHHHHHHhhcc-ccceeeeeEEEEEecCCCeEEEEecCCCCCcccccCCceeEEEcCCccCCcE
Q 043643 345 GTFSFIETLSI--L--QDAFARCIGGL-LSVVSQDVKLTIRSKSAGVRIGSIPSGRYNSEVLDEGQQAVIDIGNLYADEE 419 (634)
Q Consensus 345 G~~~~i~~~~~--l--~~~f~~~l~~l-~s~va~~~~l~v~~~~~~v~i~~v~~~~~~~~~~~~~~~~~i~lg~l~~~e~ 419 (634)
|..++.+++.. . ...|.+.+.+. ....+.++.++|++ ++|++|..+. |.+..+ ....+.++.+..+..
T Consensus 405 G~v~~y~~F~~~~~~d~~~f~~dl~~~l~~~~gf~a~mrVR~-S~gl~v~~~~-G~~~~~-----~~~~~~l~~~~~d~s 477 (810)
T 1pcx_A 405 GQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARG-STGLRMSRFY-GHFFNR-----SSDLCAFSTMPRDQS 477 (810)
T ss_dssp CCEEEEETCCTTSHHHHHHHHHHHHHHHHCCCCEEEEEEEEE-CTTEEEEEEE-SSSBCS-----SSSEEEESSCCSSCC
T ss_pred cEEEEcCCCcchhhHHHHHHHHHHHHHhhhhcceeEEEEEEc-CCCeEEEEee-cCcccc-----CcCceEeecCCCCCE
Confidence 99988876642 1 12355555543 34689999999998 7999999985 444332 235799999999988
Q ss_pred EEEEEEEEcCCCCCCCCCCCCccceEEEEEEEecCCCCceeeeecceeEEeCCCccccccccccHHHHHHHHHHHHHHHH
Q 043643 420 KEFMVYLSIPVSSAEGEQRPECTALLDVFCTHKDSASMEIHQVEGEKVEIRRPEVLSTADKKVNLQVDRQRSRLLVAETI 499 (634)
Q Consensus 420 r~~lv~l~~p~~~~~~~~~~~~~~l~~v~~~Y~~~~~~~~~~~~~~~~~v~rp~~~~~~~~~~~~~V~~~~~r~~a~~~i 499 (634)
..|.+++.-.. .. ....+|+.+.|++..+.+.++|.+..+.+........ ...+.++.... ..
T Consensus 478 ~~v~f~~~~~l-~~-------~~~~~Q~allYt~~~G~RRiRV~T~~~~vt~~~~~v~--~~~Dqea~~~l-------la 540 (810)
T 1pcx_A 478 YLFEVNVDESI-MA-------DYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVY--ASADQLAIASF-------YN 540 (810)
T ss_dssp EEEEEEECSCC-CS-------SEEEEEEEEEEECTTSCEEEEEEEEEEEEESCHHHHH--HTBCHHHHHHH-------HH
T ss_pred EEEEEEeccCC-CC-------CcEEEEEEEEEEcCCCCEEEEEEecCccccCCHHHHH--HhcCHHHHHHH-------HH
Confidence 88877775321 11 2678999999999999999999876666643211111 12334433221 22
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 043643 500 ADAQRMAEVGDLESAQALLAERR 522 (634)
Q Consensus 500 ~~a~~~a~~g~~~~A~~~L~~~~ 522 (634)
+.|...+..+...+|++.|.++.
T Consensus 541 r~av~~~~~~~~~d~r~~l~~~l 563 (810)
T 1pcx_A 541 SKAVEKALNSSLDDARVLINKSV 563 (810)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCHHHHHHHHHHHH
Confidence 33444445567777777776654
No 26
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=99.67 E-value=9.6e-15 Score=170.26 Aligned_cols=342 Identities=14% Similarity=0.102 Sum_probs=220.1
Q ss_pred EEEEeCCCCCCCCCCCCceEEEEEeCCCCCC--ccHHHHHHHHHHHHHhcCC---CCeEEEEEeCCCcEEEE--------
Q 043643 151 LLRVCAPSLPNDADRAPIDLVTVLDVSGSMS--SKLPLLKRAVHFIIQNLGS---ADRLSIVIFSSVARRIF-------- 217 (634)
Q Consensus 151 ~v~~~ap~~~~~~~r~p~dlv~VlD~SgSM~--gkl~~~K~al~~li~~L~~---~drvsIV~Fs~~a~~~~-------- 217 (634)
.+++.+|.........|.-++||||+|.+.. |-++.+++++...++.|.+ +.+||||+|++.+...-
T Consensus 287 tvEyi~p~ey~~r~p~ppvyvFvIDvS~~av~~g~l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~ 366 (926)
T 1m2v_B 287 VMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENN 366 (926)
T ss_dssp EEEEECCGGGCSSCCCCCBEEEEEECSHHHHHSCHHHHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECCCC----
T ss_pred eEEEEcChhhccCCCCCcEEEEEEECCHHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCCcccCC
Confidence 4566666543334456788999999998763 3688999999999999976 57999999998764321
Q ss_pred --------------------c-----CcccCHHHHHHHHHHHhcCC------CCCCCcHHHHHHHHHHHHHhhccCCCCc
Q 043643 218 --------------------P-----LQRMTDSGRENAIRAINTLS------SNGGTNIVEGLKKGARVLEERRERSPVA 266 (634)
Q Consensus 218 --------------------p-----l~~~t~~~~~~~~~~I~~l~------~~GgT~i~~aL~~A~~~l~~~~~~~~~~ 266 (634)
| |.++. +.+..+...|+.|. ....+.++.||..|..+|+.. ..
T Consensus 367 k~~~~q~qmlvvsdl~d~f~P~~~~~Lv~l~-e~~~~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~~-----GG 440 (926)
T 1m2v_B 367 EESADQINMMDIADLEEPFLPRPNSMVVSLK-ACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV-----GG 440 (926)
T ss_dssp -----CCEEEEECCCSSCCCSCSSSSSEETT-TTHHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTTT-----CE
T ss_pred cccccchhhccccccccccCCCcccccccHH-HHHHHHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHhh-----CC
Confidence 0 00111 23444555555442 346889999999999999753 35
Q ss_pred EEEEEeCCCCCCCCCCCcccccccCCCCCCHHH-HHhhchhhhhccccccCCCCeeEEEEEccCC-CChHHHHHHHhhcC
Q 043643 267 SIILLSDGQDTHNVLRNSYTQDEASSIPSNELA-YLNLLPSSICLSKREAGQPTFPVHTFGFGLE-HDSEAMHAIADASG 344 (634)
Q Consensus 267 ~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~-~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~-~d~~~L~~iA~~tg 344 (634)
.|++++.|.++.|.+....+.+....+...+.. +..-..+.++..+.++...++.|+.|.++.+ .|-..|..+++.||
T Consensus 441 rI~~F~sg~Pt~GpG~l~~re~~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TG 520 (926)
T 1m2v_B 441 KIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTA 520 (926)
T ss_dssp EEEEEESSCCCSSTTCCCCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTT
T ss_pred EEEEEecCCCCCCCCcccccccccccCcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcCC
Confidence 699999999999877543332222112111111 1111111222223344567888888888755 58889999999999
Q ss_pred CeEEEcCChhh--H--HHHHHHHhhc-cccceeeeeEEEEEecCCCeEEEEecCCCCCcccccCCceeEEEcCCccCCcE
Q 043643 345 GTFSFIETLSI--L--QDAFARCIGG-LLSVVSQDVKLTIRSKSAGVRIGSIPSGRYNSEVLDEGQQAVIDIGNLYADEE 419 (634)
Q Consensus 345 G~~~~i~~~~~--l--~~~f~~~l~~-l~s~va~~~~l~v~~~~~~v~i~~v~~~~~~~~~~~~~~~~~i~lg~l~~~e~ 419 (634)
|..++.+++.. . ...|.+.+.+ +....+.++.++|+| ++|++|..+. |.+..+ ....+.++.+..+..
T Consensus 521 G~v~~y~~F~~~~~~d~~kf~~dl~~~Lt~~~gf~a~mrVR~-S~glkv~~~~-G~~~~~-----~s~~~~l~~l~~d~s 593 (926)
T 1m2v_B 521 GQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARG-STGLRMSRFY-GHFFNR-----SSDLCAFSTMPRDQS 593 (926)
T ss_dssp CCEEEEESCCTTSHHHHHHHHHHHHHHHHSCCEEEEEEEEEE-CTTEEEEEEE-SSSBCS-----STTEEEEEEECSSCC
T ss_pred ceEEEcCCCcchhhhHHHHHHHHHHHHhhhhhceeEEEEEEe-CCCcEEEEee-cCcccc-----CcCceEeeccCCCCE
Confidence 99888876542 1 1235555554 344689999999998 7999999986 333322 234789999999988
Q ss_pred EEEEEEEEcCCCCCCCCCCCCccceEEEEEEEecCCCCceeeeecceeEEeCCCccccccccccHHHHHHHHHHHHHHHH
Q 043643 420 KEFMVYLSIPVSSAEGEQRPECTALLDVFCTHKDSASMEIHQVEGEKVEIRRPEVLSTADKKVNLQVDRQRSRLLVAETI 499 (634)
Q Consensus 420 r~~lv~l~~p~~~~~~~~~~~~~~l~~v~~~Y~~~~~~~~~~~~~~~~~v~rp~~~~~~~~~~~~~V~~~~~r~~a~~~i 499 (634)
..|.++++-.. .. ....+|+.+.|++..+.+.++|.+..+.+........ ...+.++.... ..
T Consensus 594 ~av~f~~~~~l-~~-------~~~~~Q~allYT~~~G~RRiRV~T~~l~vt~~l~~v~--~s~Dqea~~~l-------la 656 (926)
T 1m2v_B 594 YLFEVNVDESI-MA-------DYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVY--ASADQLAIASF-------YN 656 (926)
T ss_dssp EEEEEEECSBC-CS-------SEEEEEEEEEEEETTTEEEEEEEEEEEEEESCHHHHH--HTBCHHHHHHH-------HH
T ss_pred EEEEEEeccCC-CC-------CcEEEEEEEEEEcCCCCEEEEEEeecccccCCHHHHH--HhcCHHHHHHH-------HH
Confidence 88777775321 11 2678999999999999999999876666643211111 12334433221 22
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 043643 500 ADAQRMAEVGDLESAQALLAERR 522 (634)
Q Consensus 500 ~~a~~~a~~g~~~~A~~~L~~~~ 522 (634)
+.|...+..+.+.+|++.|.++.
T Consensus 657 r~av~~~~~~~~~d~r~~L~~~l 679 (926)
T 1m2v_B 657 SKAVEKALNSSLDDARVLINKSV 679 (926)
T ss_dssp HHHHHHHHHSCSHHHHHHHHHHH
T ss_pred HHHHHHhhcCCHHHHHHHHHHHH
Confidence 33444445567777777776654
No 27
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=99.66 E-value=4.2e-14 Score=163.24 Aligned_cols=295 Identities=13% Similarity=0.102 Sum_probs=197.3
Q ss_pred CCCceEEEEEeCCCCCCccHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEEcCcc-----------------------
Q 043643 165 RAPIDLVTVLDVSGSMSSKLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFPLQR----------------------- 221 (634)
Q Consensus 165 r~p~dlv~VlD~SgSM~gkl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~pl~~----------------------- 221 (634)
..|.-++||||+|.+.. +++.+|+++...++.|+++.+||||+|++.+...- +..
T Consensus 130 p~pp~~vFvIDvS~~a~-~l~~l~~si~~~L~~Lp~~~~VGlITf~~~v~~y~-l~~~~~~~~~vf~G~k~~~~~q~~~m 207 (769)
T 2nut_A 130 QMPLIFLYVVDTCMEDE-DLQALKESMQMSLSLLPPTALVGLITFGRMVQVHE-LGCEGISKSYVFRGTKDLSAKQLQEM 207 (769)
T ss_dssp CCCCEEEEEEECCSCHH-HHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEE-SSCCSSCEEEEEETTSCCCSHHHHHH
T ss_pred CCCCEEEEEEECCccHH-HHHHHHHHHHHHHHhCCCCceEEEEEeCCEEEEEe-CCCCCCccceeecCCccccHHHHHHH
Confidence 45778999999998622 89999999999999999999999999998765421 000
Q ss_pred --cC--------------------------HHHHHHHHHHHhcCCC---------CCCCcHHHHHHHHHHHHHhhccCCC
Q 043643 222 --MT--------------------------DSGRENAIRAINTLSS---------NGGTNIVEGLKKGARVLEERRERSP 264 (634)
Q Consensus 222 --~t--------------------------~~~~~~~~~~I~~l~~---------~GgT~i~~aL~~A~~~l~~~~~~~~ 264 (634)
++ .+.+..+.+.|+.|.. .+.+.++.||..|..+|+... ++.
T Consensus 208 l~v~d~~~~~~~~~~~~~f~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~-~~~ 286 (769)
T 2nut_A 208 LGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTF-PNT 286 (769)
T ss_dssp HC-------------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHS-CSS
T ss_pred hCCCCcccccccccccccCCCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcc-cCC
Confidence 10 1234456677777755 467899999999999998532 233
Q ss_pred CcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHH----hhc---hhhhhccccccCCCCeeEEEEEccCC-CChHHH
Q 043643 265 VASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYL----NLL---PSSICLSKREAGQPTFPVHTFGFGLE-HDSEAM 336 (634)
Q Consensus 265 ~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~----~lv---~~~i~~~~~~~~~~~i~I~t~G~G~~-~d~~~L 336 (634)
...|++++.|.++.|.+....+.+... .. ...+.. .++ .+.++..+.++...++.|+.|.++.+ .|-..|
T Consensus 287 GGrI~~F~sg~pt~GpG~l~~r~~~~~-~r-s~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l 364 (769)
T 2nut_A 287 GARIMMFIGGPATQGPGMVVGDELKTP-IR-SWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEM 364 (769)
T ss_dssp CCEEEEEESSCCCSSSSCCSCSBTTSC-CC-CHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHH
T ss_pred CcEEEEEeCCCCCCCCCCCcCcccccc-cc-cccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCccChHHH
Confidence 466999999999998765422211100 00 000000 000 01122222344567899999998865 478899
Q ss_pred HHHHhhcCCeEEEcCChhh--HHHHHHHHhhcccc---ceeeeeEEEEEecCCCeEEEEecCCCCCc------cc----c
Q 043643 337 HAIADASGGTFSFIETLSI--LQDAFARCIGGLLS---VVSQDVKLTIRSKSAGVRIGSIPSGRYNS------EV----L 401 (634)
Q Consensus 337 ~~iA~~tgG~~~~i~~~~~--l~~~f~~~l~~l~s---~va~~~~l~v~~~~~~v~i~~v~~~~~~~------~~----~ 401 (634)
..+++.|||..++.+++.. +.+.|.+.+..-.+ ..+.+..++|++ ++|++|..+.. .+.+ .+ .
T Consensus 365 ~~l~~~TGG~~~~~~~F~~~~~~~~l~~~~~~~~~~~l~~gf~a~mrVr~-S~gl~v~~~~G-~~~~~~~~~~~vsd~~~ 442 (769)
T 2nut_A 365 KCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKT-SREIKISGAIG-PCVSLNSKGPCVSENEI 442 (769)
T ss_dssp THHHHHSSCCEEEESCSSSHHHHHHHHHTTCBCTTSCBSCEEEEEEEEEE-CTTEEEEEEES-SCEECCCCCTTBCSSCC
T ss_pred HHHhhcCCceEEEcCCCchhhHHHHHHHHHhhhcccccceEEEEEEEEEe-cCCeEEEeeec-cccccccccCcccccee
Confidence 9999999999999987653 44455555543322 589999999998 79999999863 3221 11 1
Q ss_pred cCCceeEEEcCCccCCcEEEEEEEEEcCCCCCCCCCCCCccceEEEEEEEecCCCCceeeeecceeEE
Q 043643 402 DEGQQAVIDIGNLYADEEKEFMVYLSIPVSSAEGEQRPECTALLDVFCTHKDSASMEIHQVEGEKVEI 469 (634)
Q Consensus 402 ~~~~~~~i~lg~l~~~e~r~~lv~l~~p~~~~~~~~~~~~~~l~~v~~~Y~~~~~~~~~~~~~~~~~v 469 (634)
+.++...+.++.+..+....|.+++.-+....-. ......+|+.+.|++..+.+.++|.+..+.+
T Consensus 443 g~~~t~~~~l~~~~~d~s~~v~f~~~~~~~~~l~---~~~~~~~Q~a~lYt~~~G~rRiRV~T~~~~~ 507 (769)
T 2nut_A 443 GTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIP---QGGRGAIQFVTQYQHSSGQRRIRVTTIARNW 507 (769)
T ss_dssp SBCSCSEEEEEEECTTCCEEEEEEEC-------------CCEEEEEEEEEEETTSCEEEEEEEEEECB
T ss_pred ccCCCceEEeecCCCCCEEEEEEEecCccccccC---CCCeEEEEEEEEEECCCCCEEEEEEeecccc
Confidence 1234568999999999988888887644211000 0126789999999999999999987554444
No 28
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=99.65 E-value=1.8e-15 Score=176.13 Aligned_cols=136 Identities=21% Similarity=0.298 Sum_probs=103.2
Q ss_pred CCCceEEEEEEeCCCCCC-CCCCCCceEEEEEeCCCCCCc-c------HHHHHHHHHHHHHhcC--CCCeEEEEEeCCCc
Q 043643 144 CPPKFAVLLRVCAPSLPN-DADRAPIDLVTVLDVSGSMSS-K------LPLLKRAVHFIIQNLG--SADRLSIVIFSSVA 213 (634)
Q Consensus 144 ~~~~~~v~v~~~ap~~~~-~~~r~p~dlv~VlD~SgSM~g-k------l~~~K~al~~li~~L~--~~drvsIV~Fs~~a 213 (634)
..+.|.|.|.+.++.... ...+.|+|||||||+||||.+ + |+.+|+++..+++.|. ++|||+||+|++.+
T Consensus 200 ~~~~~~v~L~v~g~~~~~~~~~~~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a 279 (893)
T 2ww8_A 200 DDNQYGIELTVSGKTVYEQKDKSVPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTI 279 (893)
T ss_dssp TTTEEEEEEEEEBCEEEEESSTTCCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSB
T ss_pred CCCeeEEEEEecccccccccccCCCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCcc
Confidence 467889999998874211 146789999999999999997 3 7889999999999885 58999999999876
Q ss_pred EE------E---------------------------------EcCcccCHHHHHHHHHHHhc----------CCCCCCCc
Q 043643 214 RR------I---------------------------------FPLQRMTDSGRENAIRAINT----------LSSNGGTN 244 (634)
Q Consensus 214 ~~------~---------------------------------~pl~~~t~~~~~~~~~~I~~----------l~~~GgT~ 244 (634)
.. . .||+. +......++..|.. +.++|||+
T Consensus 280 ~~~~~~~v~~~~~~~~g~~~n~~~~w~~~~t~~t~~~~~~~~lpLT~-d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~ 358 (893)
T 2ww8_A 280 FDGTEFTVEKGVADKNGKRLNDSLFWNYDQTSFTTNTKDYSYLKLTN-DKNDIVELKNKVPTEAEDHDGNRLMYQFGATF 358 (893)
T ss_dssp CBSCEEEEECCEECTTCCEECCCTTSCTTCCEEEEECCBCCEEEEEC-CHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccC-CHHHHHHHHHHHhhhccccccccccccCCCCh
Confidence 32 1 12331 12233556677764 45689999
Q ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCC
Q 043643 245 IVEGLKKGARVLEERRERSPVASIILLSDGQDTHNV 280 (634)
Q Consensus 245 i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~ 280 (634)
++.||..|+++|.....++..+.|||||||.++.+.
T Consensus 359 i~~AL~~A~~lL~~~~~~~~~kvIILLTDG~pt~~~ 394 (893)
T 2ww8_A 359 TQKALMKADEILTQQARQNSQKVIFHITDGVPTMSY 394 (893)
T ss_dssp HHHHHHHHHHHHHHHSCSSSEEEEEEEESSCCSEEC
T ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEEcCCCCCccc
Confidence 999999999999754434566789999999998654
No 29
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=99.64 E-value=5.3e-14 Score=161.49 Aligned_cols=333 Identities=13% Similarity=0.140 Sum_probs=214.3
Q ss_pred EEEeCCCCCCCCCCCCceEEEEEeCCCC-CC-ccHHHHHHHHHHHHHhcCCCC--eEEEEEeCCCcEEE-----------
Q 043643 152 LRVCAPSLPNDADRAPIDLVTVLDVSGS-MS-SKLPLLKRAVHFIIQNLGSAD--RLSIVIFSSVARRI----------- 216 (634)
Q Consensus 152 v~~~ap~~~~~~~r~p~dlv~VlD~SgS-M~-gkl~~~K~al~~li~~L~~~d--rvsIV~Fs~~a~~~----------- 216 (634)
|++.+|......+..|.-++||||+|-. +. |-++.+++++...++.|+++. +||||+|++.+...
T Consensus 145 vEy~~p~~y~~r~p~pp~yvFvIDvs~~a~~~g~l~~~~~sl~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~~~~~~~qm 224 (751)
T 3eh1_A 145 VEFIASSDYMLRPPQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQM 224 (751)
T ss_dssp EEEEECGGGCSSSCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSSCCTTCEEEEEEESSSEEEEECCTTCSSCEE
T ss_pred EEEEcChhhhcCCCCCcEEEEEEEccHhhhhhhHHHHHHHHHHHHHHhcCCCcCcEEEEEEeCCEEEEEECCCCccccee
Confidence 3444443222234568889999999853 22 268899999999999998765 89999999875421
Q ss_pred --E--------cC-----cccCHHHHHHHHHHHhcCC---CC---CCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCC
Q 043643 217 --F--------PL-----QRMTDSGRENAIRAINTLS---SN---GGTNIVEGLKKGARVLEERRERSPVASIILLSDGQ 275 (634)
Q Consensus 217 --~--------pl-----~~~t~~~~~~~~~~I~~l~---~~---GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~ 275 (634)
+ |+ .++. +.+..+...++.|. .. ..+.++.||..|..+|+.. ...|++++.|.
T Consensus 225 lvv~dl~d~f~P~~~~~lv~l~-e~~~~i~~lL~~Lp~~~~~~~~~~~~~G~AL~aA~~ll~~~-----GGrI~~F~sg~ 298 (751)
T 3eh1_A 225 LIVSDIDDVFLPTPDSLLVNLY-ESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSPT-----GGRVSVFQTQL 298 (751)
T ss_dssp EEESCTTCTTSCCGGGTSEETT-TTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTTT-----CEEEEEEECSC
T ss_pred eccccccccCCCChhhhcccHH-HHHHHHHHHHHhhhHhhcCCCCCccchHHHHHHHHHHhhcC-----CCEEEEEecCC
Confidence 1 10 0111 23555555555542 22 3678999999999999643 35699999999
Q ss_pred CCCCCCCCccccc--------ccCCCCCCHHHHHhhchhhhhccccccCCCCeeEEEEEccCC-CChHHHHHHHhhcCCe
Q 043643 276 DTHNVLRNSYTQD--------EASSIPSNELAYLNLLPSSICLSKREAGQPTFPVHTFGFGLE-HDSEAMHAIADASGGT 346 (634)
Q Consensus 276 ~~~g~~~~~~~~~--------~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~-~d~~~L~~iA~~tgG~ 346 (634)
++.|.+....+.+ ++........-|+++ +.++...++.|..|.++.+ .|-..|..+++.|||.
T Consensus 299 pt~GpG~l~~r~~~~~~~~~ke~~~~~~a~~fY~~l--------a~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~ 370 (751)
T 3eh1_A 299 PSLGAGLLQSREDPNQRSSTKVVQHLGPATDFYKKL--------ALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGC 370 (751)
T ss_dssp CCSSTTCCCCCCCSCGGGGSSSCTTCSCSCSHHHHH--------HHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCC
T ss_pred CCCCCCccccccccccCCCchhhhhhcchHHHHHHH--------HHHHHhcCceEEEEEccCcccChHhHHHHHhhcCce
Confidence 9998765422211 111111111223332 2234567899999998765 4888999999999999
Q ss_pred EEEcCChhh-----HHHHHHHHhhccc-cceeeeeEEEEEecCCCeEEEEecCCCCCcccccCCceeEEEcCCccCCcEE
Q 043643 347 FSFIETLSI-----LQDAFARCIGGLL-SVVSQDVKLTIRSKSAGVRIGSIPSGRYNSEVLDEGQQAVIDIGNLYADEEK 420 (634)
Q Consensus 347 ~~~i~~~~~-----l~~~f~~~l~~l~-s~va~~~~l~v~~~~~~v~i~~v~~~~~~~~~~~~~~~~~i~lg~l~~~e~r 420 (634)
.++.+++.. -...|.+.+...+ ...+.+..++|++ ++|++|..+. |.+.. +....+.++.+..+...
T Consensus 371 v~~y~~F~~~~~~~~~~~f~~dl~r~l~~~~gf~a~mrVR~-S~glkv~~~~-G~~~~-----~~t~~~~l~~i~~d~s~ 443 (751)
T 3eh1_A 371 IYYYPSFHYTHNPSQAEKLQKDLKRYLTRKIGFEAVMRIRC-TKGLSMHTFH-GNFFV-----RSTDLLSLANINPDAGF 443 (751)
T ss_dssp EEECTTCBTTTBHHHHHHHHHHHHHHHHSCCEEEEEEEEEE-CTTEEEEEEE-SSSEE-----CSSSEEEEEEECTTCCE
T ss_pred EEEeCCcccccchhHHHHHHHHHHHHHhhhhccceEEEEEe-cCCeEEEEee-CCeEe-----CCCCceEeccCCCCCEE
Confidence 999887642 1234555444443 4689999999998 7999999875 44432 13456889999998887
Q ss_pred EEEEEEEcCCCCCCCCCCCCccceEEEEEEEecCCCCceeeeecceeEEeCCCccccccccccHHHHHHHHHHHHHHHHH
Q 043643 421 EFMVYLSIPVSSAEGEQRPECTALLDVFCTHKDSASMEIHQVEGEKVEIRRPEVLSTADKKVNLQVDRQRSRLLVAETIA 500 (634)
Q Consensus 421 ~~lv~l~~p~~~~~~~~~~~~~~l~~v~~~Y~~~~~~~~~~~~~~~~~v~rp~~~~~~~~~~~~~V~~~~~r~~a~~~i~ 500 (634)
.|.++++-...... ...+|+.+.|++..+.+.++|.+..+.+........ ...+.+... +-..+
T Consensus 444 ~v~~~~~~~l~~~~-------~~~~Q~allYT~~~G~RRiRV~T~~l~vt~~~~~v~--~~~DqeA~~-------~llar 507 (751)
T 3eh1_A 444 AVQLSIEESLTDTS-------LVCFQTALLYTSSKGERRIRVHTLCLPVVSSLADVY--AGVDVQAAI-------CLLAN 507 (751)
T ss_dssp EEEEEESSCCCSCS-------EEEEEEEEEEECTTSCEEEEEEEEEEEEECSHHHHH--HTBCHHHHH-------HHHHH
T ss_pred EEEEEEcCCCCCCC-------ceEEEEEEeeecCCCCEEEEEEEecccccCCHHHHH--HhcCHHHHH-------HHHHH
Confidence 77777753222112 678999999999999999999876655543211111 123333321 11223
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 043643 501 DAQRMAEVGDLESAQALLAER 521 (634)
Q Consensus 501 ~a~~~a~~g~~~~A~~~L~~~ 521 (634)
.|...+..+.+.++++.|.+.
T Consensus 508 ~av~~~~~~~l~d~r~~l~~~ 528 (751)
T 3eh1_A 508 MAVDRSVSSSLSDARDALVNA 528 (751)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHH
Confidence 444445567777777776654
No 30
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=99.63 E-value=2e-13 Score=157.65 Aligned_cols=353 Identities=12% Similarity=0.089 Sum_probs=222.8
Q ss_pred EEEeCCCCCCCCCCCCceEEEEEeCCCCCCccHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEEcCc-----------
Q 043643 152 LRVCAPSLPNDADRAPIDLVTVLDVSGSMSSKLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFPLQ----------- 220 (634)
Q Consensus 152 v~~~ap~~~~~~~r~p~dlv~VlD~SgSM~gkl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~pl~----------- 220 (634)
|+..+|. ....|.-++||||+|.+.. .++.+|+++...++.|+++.+||||+|++.+... .+.
T Consensus 110 vEy~~p~----~~~~pp~~vFvIDvs~~~~-~l~~l~~sl~~~L~~Lp~~~~VGlITf~~~V~~y-~l~~~~~~~~~V~~ 183 (768)
T 1m2o_A 110 IEYITNK----PVTVPPIFFFVVDLTSETE-NLDSLKESIITSLSLLPPNALIGLITYGNVVQLH-DLSSETIDRCNVFR 183 (768)
T ss_dssp EEEECSC----CCCSCCEEEEEEECCSCHH-HHHHHHHHHHHHHHTSCTTCEEEEEEESSEEEEC-CCSSSSSEEEEEEE
T ss_pred EEEECCC----CCCCCCEEEEEEECCcCHH-HHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEE-ECCCCCCcceeeec
Confidence 4455553 2346788999999997743 7899999999999999999999999999865331 100
Q ss_pred ---------------ccC------------------------------HHHHHHHHHHHhcCCC---------CCCCcHH
Q 043643 221 ---------------RMT------------------------------DSGRENAIRAINTLSS---------NGGTNIV 246 (634)
Q Consensus 221 ---------------~~t------------------------------~~~~~~~~~~I~~l~~---------~GgT~i~ 246 (634)
.++ .+.+..+.+.|+.|.. ...+.++
T Consensus 184 g~k~~~~~q~~~~l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G 263 (768)
T 1m2o_A 184 GDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATG 263 (768)
T ss_dssp TTSCCCHHHHHHHHHSCCCC---------------CCSSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHH
T ss_pred CCccccHHHHHHHHhhccccccCCccccccccccccccCCccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHH
Confidence 000 1124456677777754 3467899
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHh----hc---hhhhhccccccCCCC
Q 043643 247 EGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLN----LL---PSSICLSKREAGQPT 319 (634)
Q Consensus 247 ~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~----lv---~~~i~~~~~~~~~~~ 319 (634)
.||..|..+|+... ++....|++++.|.++.|.+....+.+... . ....++.+ ++ .+.++..+.++...+
T Consensus 264 ~Al~~A~~ll~~~~-~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~-~-rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~g 340 (768)
T 1m2o_A 264 SALNIASLLLQGCY-KNIPARIILFASGPGTVAPGLIVNSELKDP-L-RSHHDIDSDHAQHYKKACKFYNQIAQRVAANG 340 (768)
T ss_dssp HHHHHHHHHHHHHC-TTSCCEEEEEESSCCCSSSSCCSCSBTTSC-C-CCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcc-CCCCcEEEEEeCCCCCCCCccccccccccc-c-ccccccccchhhhcCchHHHHHHHHHHHHHCC
Confidence 99999999998532 233467999999999998765422221100 0 00000000 00 011222233445678
Q ss_pred eeEEEEEccCC-CChHHHHHHHhhcCCeEEEcCChhhHHHHHHHHhhcccc-------ceeeeeEEEEEecCCCeEEEEe
Q 043643 320 FPVHTFGFGLE-HDSEAMHAIADASGGTFSFIETLSILQDAFARCIGGLLS-------VVSQDVKLTIRSKSAGVRIGSI 391 (634)
Q Consensus 320 i~I~t~G~G~~-~d~~~L~~iA~~tgG~~~~i~~~~~l~~~f~~~l~~l~s-------~va~~~~l~v~~~~~~v~i~~v 391 (634)
+.|+.|.++.+ .|-..|..++..|||..++.+++..- .|.+.+..+++ ..+.+..++|++ ++|++|..+
T Consensus 341 i~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~~--~~~~~l~r~l~~~~~~~~~~gf~a~mrVr~-S~gl~v~~~ 417 (768)
T 1m2o_A 341 HTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTA--IFKQSYLRLFAKDEEGYLKMAFNGNMAVKT-SKDLKVQGL 417 (768)
T ss_dssp CEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSH--HHHHHHHHTTCBCTTSSBSCEEEEEEEEEE-CTTEEEEEE
T ss_pred eEEEEEEccCCccChHHHhhHhhcCCceEEEcCCCchH--HHHHHHHHHHhhccccccceEEEEEEEEEe-cCCceEEEe
Confidence 99999988765 57889999999999999998887542 34444444444 489999999998 799999998
Q ss_pred cCCCCCcc------cc----cCCceeEEEcCCccCCcEEEEEEEEEcCCCCCCCCC----C--CCccceEEEEEEEecCC
Q 043643 392 PSGRYNSE------VL----DEGQQAVIDIGNLYADEEKEFMVYLSIPVSSAEGEQ----R--PECTALLDVFCTHKDSA 455 (634)
Q Consensus 392 ~~~~~~~~------~~----~~~~~~~i~lg~l~~~e~r~~lv~l~~p~~~~~~~~----~--~~~~~l~~v~~~Y~~~~ 455 (634)
....+... +. +-++...+.++.+..+....|.+++.-+........ . ......+|+.+.|+++.
T Consensus 418 ~G~~~~~~~~~~~~vsd~~ig~~~t~~~~l~~~~~d~t~~v~f~~~~~~~~~~~~~~~~l~~~~~~~~~iQ~a~lYt~~~ 497 (768)
T 1m2o_A 418 IGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEIANTAANSNPMMSAPGSADRPHLAYTQFITTYQHSS 497 (768)
T ss_dssp ESSCEECCSCCCSCBCSSCSSBCSCSEEEEEEECTTCCEEEEEEECCC-----------------CEEEEEEEEEEEETT
T ss_pred ecCccccccccccccCcceeccCCCceEEeecCCCCCEEEEEEEeccccccccccccccccccCCCcEEEEEEEEEEcCC
Confidence 63322111 11 123456899999999998888888764432100000 0 01267899999999999
Q ss_pred CCceeeeecceeEEeCC-CccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 043643 456 SMEIHQVEGEKVEIRRP-EVLSTADKKVNLQVDRQRSRLLVAETIADAQRMAEVGDLESAQALLAERRSGL 525 (634)
Q Consensus 456 ~~~~~~~~~~~~~v~rp-~~~~~~~~~~~~~V~~~~~r~~a~~~i~~a~~~a~~g~~~~A~~~L~~~~~~l 525 (634)
+.+.++|.+..+.+... ..... ...+.++.. .-..+.|...++..+..+|++.|.+....+
T Consensus 498 G~rriRV~T~~~~~t~~~~~~v~--~~~Dqea~~-------~llar~av~~~~~~~~~d~r~~l~~~li~l 559 (768)
T 1m2o_A 498 GTNRIRVTTVANQLLPFGTPAIA--ASFDQEAAA-------VLMARIAVHKAETDDGADVIRWLDRTLIKL 559 (768)
T ss_dssp TEEEEEEEEEEEEEECTTCHHHH--HTBCHHHHH-------HHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeecccccCccHHHHH--HhcCHHHHH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999998766666521 11111 123333322 112234444455667788888777654333
No 31
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=99.57 E-value=9.9e-13 Score=151.53 Aligned_cols=289 Identities=12% Similarity=0.153 Sum_probs=193.2
Q ss_pred CCCCceEEEEEeCCCC-CC-ccHHHHHHHHHHHHHhcCCC-------CeEEEEEeCCCcEEE------------------
Q 043643 164 DRAPIDLVTVLDVSGS-MS-SKLPLLKRAVHFIIQNLGSA-------DRLSIVIFSSVARRI------------------ 216 (634)
Q Consensus 164 ~r~p~dlv~VlD~SgS-M~-gkl~~~K~al~~li~~L~~~-------drvsIV~Fs~~a~~~------------------ 216 (634)
...|.-++||||+|-. .. |-++.+++++...++.|+++ .+||||+|++.+...
T Consensus 174 ~p~pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~vv~d~~ 253 (770)
T 3efo_B 174 PPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVG 253 (770)
T ss_dssp CCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCTT
T ss_pred CCCCcEEEEEEEcchhhccchHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCCCcccCceEEEecccc
Confidence 4467889999999854 32 38899999999999999865 599999999865321
Q ss_pred ---EcC-----cccCHHHHHHHHHHHhcC------CCCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCC-CCCC
Q 043643 217 ---FPL-----QRMTDSGRENAIRAINTL------SSNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDT-HNVL 281 (634)
Q Consensus 217 ---~pl-----~~~t~~~~~~~~~~I~~l------~~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~-~g~~ 281 (634)
.|+ .++. +.+..+...|+.| ....+|.++.||+.|+..+.... ....|++++.|.|+ .|.+
T Consensus 254 d~f~P~~~~~Lv~l~-e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~---~GGkI~~F~s~lP~t~GpG 329 (770)
T 3efo_B 254 EVFVPLLDGFLVNYQ-ESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAAD---CPGKLFIFHSSLPTAEAPG 329 (770)
T ss_dssp SCCCCCSSSSSBCTT-TTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHT---CCEEEEEEECSCCCSSSTT
T ss_pred cccCCCccceeeeHH-HHHHHHHHHHHhhHhhccCCCCCcchHHHHHHHHHHHhccCC---CCcEEEEEecCCCCcCCCc
Confidence 121 1121 2344444445444 33468889999999999997532 23569999999888 5665
Q ss_pred CCcccccccCCCCCCHHHHHhhchhhhhccccccCCCCeeEEEEEccCC-CChHHHHHHHhhcCCeEEEcCChhh--HHH
Q 043643 282 RNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPTFPVHTFGFGLE-HDSEAMHAIADASGGTFSFIETLSI--LQD 358 (634)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~-~d~~~L~~iA~~tgG~~~~i~~~~~--l~~ 358 (634)
....+.+....+...+..+..-..+.++..+.++...++.|..|.++.+ .|-..|..++..|||..++.+++.. -.+
T Consensus 330 ~l~~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~~~~ 409 (770)
T 3efo_B 330 KLKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNNFQMHLDRQ 409 (770)
T ss_dssp CCCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHH
T ss_pred cccccccccccCCcchhhhhcchHHHHHHHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhcCceEEEecCCcchhHHH
Confidence 4322222111111111111100111222223345567899999988765 5888999999999999999988642 234
Q ss_pred HHHHHhhcc-ccceeeeeEEEEEecCCCeEEEEecCCCCCcccccCCceeEEEcCCccCCcEEEEEEEEEcCCCCCCCCC
Q 043643 359 AFARCIGGL-LSVVSQDVKLTIRSKSAGVRIGSIPSGRYNSEVLDEGQQAVIDIGNLYADEEKEFMVYLSIPVSSAEGEQ 437 (634)
Q Consensus 359 ~f~~~l~~l-~s~va~~~~l~v~~~~~~v~i~~v~~~~~~~~~~~~~~~~~i~lg~l~~~e~r~~lv~l~~p~~~~~~~~ 437 (634)
.|.+.+... ....+.+..++|++ ++|++|..+. |.+.. ++...+.++.+..+....|.++++-+.....
T Consensus 410 ~f~~dl~~~l~~~~gf~a~mrVR~-S~gl~v~~~~-G~~~~-----~~t~~~~l~~~~~d~s~~v~f~~~~~l~~~~--- 479 (770)
T 3efo_B 410 QFLNDLRNDIEKKIGFDAIMRVRT-STGFRATDFF-GGILM-----NNTTDVEMAAIDCDKAVTVEFKHDDKLSEDS--- 479 (770)
T ss_dssp HHHHHHHHHHHSCEEEEEEEEEEE-CTTEEEEEEE-SSCBC-----SSSSCEEEEEEESSCCEEEEEEESSCCBTTT---
T ss_pred HHHHHHHHhhhhceeeeEEEEEEe-cCCeEEEEeE-CCeeC-----CCCCceEecccCcCceEEEEEEecCCCCCCC---
Confidence 454444433 34689999999998 7999999986 33321 2334678999999988888887753222221
Q ss_pred CCCccceEEEEEEEecCCCCceeeeecceeEEe
Q 043643 438 RPECTALLDVFCTHKDSASMEIHQVEGEKVEIR 470 (634)
Q Consensus 438 ~~~~~~l~~v~~~Y~~~~~~~~~~~~~~~~~v~ 470 (634)
...+|+.+.|++..+.+.++|.+..+.+.
T Consensus 480 ----~~~~Q~allYt~~~G~RRiRV~T~~l~vt 508 (770)
T 3efo_B 480 ----GALIQCAVLYTTISGQRRLRIHNLGLNCS 508 (770)
T ss_dssp ----BEEEEEEEEEECTTCCEEEEEEEEEEEEE
T ss_pred ----cEEEEEEEEEEcCCCCEEEEEEEechhhc
Confidence 57899999999999999999987666554
No 32
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=99.57 E-value=9.5e-13 Score=151.57 Aligned_cols=289 Identities=15% Similarity=0.179 Sum_probs=192.4
Q ss_pred CCCCceEEEEEeCCCC-CC-ccHHHHHHHHHHHHHhcCCC-------CeEEEEEeCCCcEEE------------------
Q 043643 164 DRAPIDLVTVLDVSGS-MS-SKLPLLKRAVHFIIQNLGSA-------DRLSIVIFSSVARRI------------------ 216 (634)
Q Consensus 164 ~r~p~dlv~VlD~SgS-M~-gkl~~~K~al~~li~~L~~~-------drvsIV~Fs~~a~~~------------------ 216 (634)
...|.-++||||+|-. .. |-++.+++++...++.|+++ .+||||+|++.+...
T Consensus 170 ~p~pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~vv~dl~ 249 (766)
T 3eh2_A 170 FPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVA 249 (766)
T ss_dssp CCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCTT
T ss_pred CCCCCEEEEEEECchhhccchHHHHHHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECCCCCCCceEEEecChh
Confidence 3457789999999854 22 37899999999999999865 689999999865321
Q ss_pred ---Ec-----CcccCHHHHHHHHHHHhcC------CCCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCC-CCCC
Q 043643 217 ---FP-----LQRMTDSGRENAIRAINTL------SSNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDT-HNVL 281 (634)
Q Consensus 217 ---~p-----l~~~t~~~~~~~~~~I~~l------~~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~-~g~~ 281 (634)
.| |.++. +.+..+...|+.| ....+|.++.||+.|+..+... +....|++++.|.|+ .|.+
T Consensus 250 d~f~P~~~~~lv~l~-e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~---~~GGkI~~F~s~lP~t~GpG 325 (766)
T 3eh2_A 250 DMFVPLLDGFLVNVN-ESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAA---ECAGKLFLFHTSLPIAEAPG 325 (766)
T ss_dssp TCCCCCCTTSSBCTT-TTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHT---TCCEEEEEEECSCCCSSSTT
T ss_pred hhccccccceeEeHH-HHHHHHHHHHHhhhhhccCCCCCcchHHHHHHHHHHHhccC---CCCcEEEEEecCCCCcCCCc
Confidence 12 11112 2344455555444 3446889999999999998653 234569999999888 5665
Q ss_pred CCcccccccCCCCCCHHHHHhhchhhhhccccccCCCCeeEEEEEccCC-CChHHHHHHHhhcCCeEEEcCChhhH--HH
Q 043643 282 RNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPTFPVHTFGFGLE-HDSEAMHAIADASGGTFSFIETLSIL--QD 358 (634)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~-~d~~~L~~iA~~tgG~~~~i~~~~~l--~~ 358 (634)
....+.+....+...+..+..-..+.++..+.++...++.|..|.++.+ .|-..|..++..|||..++.+++..- ..
T Consensus 326 ~l~~r~~~~~~~sdke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~d~~ 405 (766)
T 3eh2_A 326 KLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYASFQVENDQE 405 (766)
T ss_dssp CCCCCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHH
T ss_pred ccccccccccCCCcchhhhccchHHHHHHHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhhcCceEEEeCCCcchhHHH
Confidence 4322222111111111000000011122222344567899999988765 48889999999999999999886431 23
Q ss_pred HHHHHhhccc-cceeeeeEEEEEecCCCeEEEEecCCCCCcccccCCceeEEEcCCccCCcEEEEEEEEEcCCCCCCCCC
Q 043643 359 AFARCIGGLL-SVVSQDVKLTIRSKSAGVRIGSIPSGRYNSEVLDEGQQAVIDIGNLYADEEKEFMVYLSIPVSSAEGEQ 437 (634)
Q Consensus 359 ~f~~~l~~l~-s~va~~~~l~v~~~~~~v~i~~v~~~~~~~~~~~~~~~~~i~lg~l~~~e~r~~lv~l~~p~~~~~~~~ 437 (634)
.|.+.+...+ ...+.+..++|++ ++|++|..+. |.+.. ++...+.++.+..+....|.++++-+.....
T Consensus 406 ~f~~dl~~~l~~~~gf~a~mrVR~-S~glkv~~~~-G~~~~-----~~t~~~~l~~i~~d~s~~v~f~~~~~l~~~~--- 475 (766)
T 3eh2_A 406 RFLSDLRRDVQKVVGFDAVMRVRT-STGIRAVDFF-GAFYM-----SNTTDVELAGLDGDKTVTVEFKHDDRLNEES--- 475 (766)
T ss_dssp HHHHHHHHHHHSCEEEEEEEEEEE-CTTEEEEEEE-ESCBC-----SSSSCEEEEEEETTCCEEEEEEESSCCCTTT---
T ss_pred HHHHHHHHHhhhcceeeEEEEEEe-cCCeEEEEeE-CCeec-----CCCCceeeccCCCCceEEEEEEecCCCCCCC---
Confidence 4555544433 4689999999998 7999999986 33322 2345678999999888888777753322222
Q ss_pred CCCccceEEEEEEEecCCCCceeeeecceeEEe
Q 043643 438 RPECTALLDVFCTHKDSASMEIHQVEGEKVEIR 470 (634)
Q Consensus 438 ~~~~~~l~~v~~~Y~~~~~~~~~~~~~~~~~v~ 470 (634)
...+|+.+.|++..+.+.++|.+..+.+.
T Consensus 476 ----~~~~Q~allYt~~~G~RRiRV~T~~l~vt 504 (766)
T 3eh2_A 476 ----GALLQCALLYTSCAGQRRLRIHNLALNCC 504 (766)
T ss_dssp ----CEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred ----cEEEEEEEEeEcCCCCEEEEEEEEeeEec
Confidence 67899999999999999999987666554
No 33
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=99.47 E-value=1.7e-13 Score=153.73 Aligned_cols=158 Identities=13% Similarity=0.166 Sum_probs=116.2
Q ss_pred ceEEEEEeCCCCCC-----c--cHHHHHHHHHHHHHh---cCCCCeEEEEEeCCCcE--------------EEEcCcccC
Q 043643 168 IDLVTVLDVSGSMS-----S--KLPLLKRAVHFIIQN---LGSADRLSIVIFSSVAR--------------RIFPLQRMT 223 (634)
Q Consensus 168 ~dlv~VlD~SgSM~-----g--kl~~~K~al~~li~~---L~~~drvsIV~Fs~~a~--------------~~~pl~~~t 223 (634)
-++|||||+|+||. + +|+.+|+++..++++ .+++|+||||.|++.+. ++.+|+..+
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~vl~~l~~~~ 87 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPD 87 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEECCC
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceEEeecCCCCC
Confidence 68999999999996 2 899999999999984 68999999999998762 334444322
Q ss_pred HHHHHHHHHHHhc-CCCC-CCCcHHHHHHHHHHHHHhhc--cCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHH
Q 043643 224 DSGRENAIRAINT-LSSN-GGTNIVEGLKKGARVLEERR--ERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELA 299 (634)
Q Consensus 224 ~~~~~~~~~~I~~-l~~~-GgT~i~~aL~~A~~~l~~~~--~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~ 299 (634)
. .....|+. +.++ ++|+++.||..|.+.|.... .+...++|||||||..+.+.. .
T Consensus 88 ~----~~l~~l~~~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~~-----------------~ 146 (565)
T 1jey_B 88 F----DLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKS-----------------Q 146 (565)
T ss_dssp H----HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCCT-----------------T
T ss_pred H----HHHHHHHhhccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCHH-----------------H
Confidence 2 23345665 7665 79999999999999998762 222457899999999886421 1
Q ss_pred HHhhchhhhhccccccCCCCeeEE-EEEccCCC--------------------------------ChHHHHHHHhhcCC-
Q 043643 300 YLNLLPSSICLSKREAGQPTFPVH-TFGFGLEH--------------------------------DSEAMHAIADASGG- 345 (634)
Q Consensus 300 ~~~lv~~~i~~~~~~~~~~~i~I~-t~G~G~~~--------------------------------d~~~L~~iA~~tgG- 345 (634)
+..++. .++..+|.|+ +||||.+. |+.+|+.||+.++|
T Consensus 147 ~~~~a~--------~l~~~gI~i~~vig~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~L~~ia~~~~G~ 218 (565)
T 1jey_B 147 LDIIIH--------SLKKCDISLQFFLPFSLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGE 218 (565)
T ss_dssp HHHHHH--------HHHHTTEEEEEEESSCCC----------CCCCTTCSSCCCCTTTSCHHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHH--------HHHhcCcEEEEEeccCCCcCCcccccccccccccccccccchhccccchhhhHHHHHHHHHhcCCC
Confidence 222222 2346899999 99988541 23468999999999
Q ss_pred ----eEEEcCChh
Q 043643 346 ----TFSFIETLS 354 (634)
Q Consensus 346 ----~~~~i~~~~ 354 (634)
.|+.+.+.-
T Consensus 219 ~~~s~~~~~~~~~ 231 (565)
T 1jey_B 219 DGLDEIYSFSESL 231 (565)
T ss_dssp GGGGGEEEHHHHT
T ss_pred cccceeecHHHHH
Confidence 898886543
No 34
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=99.39 E-value=1.2e-12 Score=146.20 Aligned_cols=108 Identities=14% Similarity=0.144 Sum_probs=77.9
Q ss_pred CCCCCceEEEEEeCCCCCCc-----cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhcC
Q 043643 163 ADRAPIDLVTVLDVSGSMSS-----KLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINTL 237 (634)
Q Consensus 163 ~~r~p~dlv~VlD~SgSM~g-----kl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~l 237 (634)
.+..+.+++||||+||||.+ ++...+.|+...+..+.++|+++||+|++. ...+|++.- .+...+.+.|..+
T Consensus 364 ~~~~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~d~vglv~Fs~~-~~~~~~t~~--~~l~~~l~~l~~~ 440 (538)
T 1yvr_A 364 VEPTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDE-MLPCPITVN--MLLHEVVEKMSDI 440 (538)
T ss_dssp CCCCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCSSEEEEEESSS-EECCSCCTT--SCHHHHHHHHTTC
T ss_pred cCCCCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccCCceEEEEECCC-ceEcCCCCc--ccHHHHHHHHhcC
Confidence 34678999999999999985 466644334333444567999999999984 344566632 2355666666655
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCC
Q 043643 238 SSNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNV 280 (634)
Q Consensus 238 ~~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~ 280 (634)
++|||+++.||..|++. ....+.|||||||.++.|.
T Consensus 441 -~~GgT~i~~aL~~a~~~------~~~~~~iIliTDg~~~~g~ 476 (538)
T 1yvr_A 441 -TMGSTDCALPMLWAQKT------NTAADIFIVFTDCETNVED 476 (538)
T ss_dssp -CCSCCCTTHHHHHHHHT------TCCCSEEEEEECCCCCSSS
T ss_pred -CCCCCcHHHHHHHHHhc------cCCCCEEEEEcCCCCCCCC
Confidence 68999999999999875 2345679999999988653
No 35
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=99.22 E-value=1.9e-11 Score=120.02 Aligned_cols=89 Identities=26% Similarity=0.375 Sum_probs=76.3
Q ss_pred CCceEEEEEeCCCCCCccHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCc---EEE-EcCcccCHHHHHHHHHHHhcCC
Q 043643 166 APIDLVTVLDVSGSMSSKLPLLKRAVHFIIQNLG---SADRLSIVIFSSVA---RRI-FPLQRMTDSGRENAIRAINTLS 238 (634)
Q Consensus 166 ~p~dlv~VlD~SgSM~gkl~~~K~al~~li~~L~---~~drvsIV~Fs~~a---~~~-~pl~~~t~~~~~~~~~~I~~l~ 238 (634)
.|.|++||||+||||.+||..+|.++..++..+. ..++|+||+|++.. ..+ .|++. .. .+...+..|.
T Consensus 133 ~~~~vvfLVDtSgSM~~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~----~~-~~~~~l~~L~ 207 (242)
T 3rag_A 133 VALHLVVCLDTSASMRDKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSS----EV-NVAALEAELV 207 (242)
T ss_dssp SCEEEEEEEECSGGGTTTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEES----SC-CHHHHHHHCC
T ss_pred CCCCEEEEEECcccHHHHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCC----hH-HHHHHHhhCC
Confidence 7899999999999998899999999999998875 47999999999975 344 48873 22 5667788899
Q ss_pred CCCCCcHHHHHHHHHHHHHhh
Q 043643 239 SNGGTNIVEGLKKGARVLEER 259 (634)
Q Consensus 239 ~~GgT~i~~aL~~A~~~l~~~ 259 (634)
++|+|+++.||..|+++++..
T Consensus 208 agG~Tplg~AL~~A~~~~~~~ 228 (242)
T 3rag_A 208 ARGGTPTGPAIDHAADLLLSH 228 (242)
T ss_dssp CCSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999643
No 36
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=99.14 E-value=1.1e-10 Score=131.76 Aligned_cols=142 Identities=10% Similarity=0.086 Sum_probs=99.8
Q ss_pred eEEEEEeCCCCCCc--------cHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCc----------EEEEcCcccCHHHH
Q 043643 169 DLVTVLDVSGSMSS--------KLPLLKRAVHFIIQNL---GSADRLSIVIFSSVA----------RRIFPLQRMTDSGR 227 (634)
Q Consensus 169 dlv~VlD~SgSM~g--------kl~~~K~al~~li~~L---~~~drvsIV~Fs~~a----------~~~~pl~~~t~~~~ 227 (634)
+++|+||+|+||.. +|+.+++.+..++++. .++|+||||.|++.+ .++.||...+....
T Consensus 37 ~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~~~L~~~~~~~i 116 (609)
T 1jey_A 37 SLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRI 116 (609)
T ss_dssp EEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEEEECCCHHHH
T ss_pred EEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEEecCCCCCHHHH
Confidence 39999999999963 7999999999999863 689999999999987 46677776655433
Q ss_pred HHHHHHHh--------c-CCCCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHH
Q 043643 228 ENAIRAIN--------T-LSSNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNEL 298 (634)
Q Consensus 228 ~~~~~~I~--------~-l~~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~ 298 (634)
..+...++ . +..+++|+++.||..|.++|.....+...+.|||||||.++.+.... ...
T Consensus 117 k~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~~~~------------~~~ 184 (609)
T 1jey_A 117 LELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSA------------KAS 184 (609)
T ss_dssp HHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTTCHH------------HHH
T ss_pred HHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCCchH------------HHH
Confidence 33333222 0 11246899999999999999765322235789999999987643110 001
Q ss_pred HHHhhchhhhhccccccCCCCeeEEEEEccCC
Q 043643 299 AYLNLLPSSICLSKREAGQPTFPVHTFGFGLE 330 (634)
Q Consensus 299 ~~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~ 330 (634)
...... ..+...||.|++||+|..
T Consensus 185 ~~~~~a--------~~l~~~gI~i~~igig~~ 208 (609)
T 1jey_A 185 RARTKA--------GDLRDTGIFLDLMHLKKP 208 (609)
T ss_dssp HHHHHH--------HHHHHHTEEEEEEEBCCT
T ss_pred HHHHHH--------HHHHhcCcEEEEEecCCC
Confidence 122111 134567999999999975
No 37
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=99.13 E-value=1.6e-10 Score=128.58 Aligned_cols=153 Identities=18% Similarity=0.180 Sum_probs=96.9
Q ss_pred CCCCceEEEEEeCCCCCCc-------cHHHHHHHHHHHHHhcCCCCeEEEEEeCCCcEEEEcCcccCHHHHHHHHHHHhc
Q 043643 164 DRAPIDLVTVLDVSGSMSS-------KLPLLKRAVHFIIQNLGSADRLSIVIFSSVARRIFPLQRMTDSGRENAIRAINT 236 (634)
Q Consensus 164 ~r~p~dlv~VlD~SgSM~g-------kl~~~K~al~~li~~L~~~drvsIV~Fs~~a~~~~pl~~~t~~~~~~~~~~I~~ 236 (634)
+..+.+++++||+||||.+ ++..+..|+...+-.+..+|+++||+|++... ..|++. ......+.+.|..
T Consensus 359 ~~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la~~~~r~~d~v~lv~Fs~~~~-~~~~~~--~~~l~~~l~~l~~ 435 (535)
T 2nvo_A 359 QPANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEPDALTMGFAEQFR-PLGITP--RDTLESAMQKAQS 435 (535)
T ss_dssp CCCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHHHHHHHHSSEEEEEEEBSSEE-ECCCCT--TCCHHHHHHHTCC
T ss_pred CCCCceEEEEEECCccccCCCCCCCCcccHHHHHHHHHHHHcCcCCceEEEEECCcce-EcCCCc--chhHHHHHHHHhh
Confidence 3467999999999999975 24544444444344456789999999998533 345552 1222333334433
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccC
Q 043643 237 LSSNGGTNIVEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAG 316 (634)
Q Consensus 237 l~~~GgT~i~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~ 316 (634)
. .+|||+++.+|..+.+. ......|||+|||+.+.+...+ ... +. .++. ..
T Consensus 436 ~-~~ggTdi~~~l~~a~~~------~~~~~~vIliTD~~~~~g~~~~--------------~~a---l~-~~r~----~~ 486 (535)
T 2nvo_A 436 V-SFGGTDCAQPILWAAQE------RLDVDTFVVYTDNETWAGQVHP--------------TVA---LD-QYAQ----KM 486 (535)
T ss_dssp S-SBCCCCTTHHHHHHHHT------TCCCSEEEEEESSCCCCCSSCH--------------HHH---HH-HHHH----HH
T ss_pred C-CCCCccHHHHHHHHHHh------cCCCCEEEEEeCCCccCCCCCH--------------HHH---HH-HHHH----hh
Confidence 2 26999999998776432 2345679999999988764321 111 11 1111 11
Q ss_pred CCCeeEEEEEccCC-----------------CChHHHHHHHhhcCCeEE
Q 043643 317 QPTFPVHTFGFGLE-----------------HDSEAMHAIADASGGTFS 348 (634)
Q Consensus 317 ~~~i~I~t~G~G~~-----------------~d~~~L~~iA~~tgG~~~ 348 (634)
..++.|++||+|.. +++..|+.||+.++|.|+
T Consensus 487 ~~~~klv~i~l~~~~~~~~~~~~~~~~~i~g~se~~l~~Ia~~~~G~~~ 535 (535)
T 2nvo_A 487 GRAPKLIVVGLTATEFSIADPQRRDMLDVVGFDAAAPNVMTAFARGEVL 535 (535)
T ss_dssp SCCCEEEEEETTCSCCCCSCTTCSSEEEEEECCTTHHHHHHHHHTTCC-
T ss_pred CCCCeEEEEeccCCCcccCCCCCCCceeeeCCCHHHHHHHHHHhCCCcC
Confidence 34799999999862 255678888888888764
No 38
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=5e-11 Score=96.29 Aligned_cols=53 Identities=21% Similarity=0.605 Sum_probs=42.5
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCCCC
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQ 56 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~~ 56 (634)
+.|+||++.+... .....++|+|.||..||..|++. ...||+||+.+......
T Consensus 16 ~~C~IC~~~~~~~--~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 16 ELCAVCLEDFKPR--DELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CBCSSSCCBCCSS--SCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSCCSC
T ss_pred CCCcCCCcccCCC--CcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccccccc
Confidence 3699999999763 33455689999999999999986 44899999987765443
No 39
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=4.6e-11 Score=98.37 Aligned_cols=51 Identities=35% Similarity=0.878 Sum_probs=39.9
Q ss_pred CCcccccccccc----------CCcceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 1 KTCPICLGSLRR----------GQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 1 ~~C~ICl~~~~~----------~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
++|+||++.|.. ++....+...|+|.||..||..|+.. +.+||+||++|..
T Consensus 16 ~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp SCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 468888888854 23334555679999999999999987 4589999998754
No 40
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.08 E-value=7.8e-11 Score=93.74 Aligned_cols=50 Identities=34% Similarity=0.778 Sum_probs=41.3
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccC
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDV 53 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 53 (634)
..|+||++.+.. +..++.++|+|.||..||..|+.. ...||+||+.+...
T Consensus 15 ~~C~IC~~~~~~--~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 15 EKCTICLSILEE--GEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp CSBTTTTBCCCS--SSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred CCCeeCCccccC--CCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 369999999965 344677899999999999999986 45799999987653
No 41
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.08 E-value=7.4e-11 Score=96.30 Aligned_cols=53 Identities=26% Similarity=0.641 Sum_probs=43.1
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCCCC
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQ 56 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~~ 56 (634)
..|+||++.|.. ...+..++|+|.||..||..|++. ...||+||+.+......
T Consensus 16 ~~C~IC~~~~~~--~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 16 LECPVCKEDYAL--GESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp CCCTTTTSCCCT--TSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSC
T ss_pred CCCeeCCccccC--CCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccC
Confidence 369999999976 334566789999999999999976 46899999998765444
No 42
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.08 E-value=5.5e-11 Score=102.80 Aligned_cols=51 Identities=27% Similarity=0.718 Sum_probs=42.0
Q ss_pred CCccccccccccC-------------CcceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 1 KTCPICLGSLRRG-------------QGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 1 ~~C~ICl~~~~~~-------------~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
+.|+||++.|... ++..++.++|+|.||.+||..|+.. +.+||+||+.|..
T Consensus 38 d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 38 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF 101 (106)
T ss_dssp CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCCE
T ss_pred CCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCccee
Confidence 5799999998742 2345677899999999999999987 6689999999853
No 43
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.05 E-value=8e-11 Score=103.53 Aligned_cols=56 Identities=29% Similarity=0.582 Sum_probs=42.6
Q ss_pred CCccccccccccCC-------------cceeEecCCCCccchhhHHHHHh----cCCCcCcccccccccCCCC
Q 043643 1 KTCPICLGSLRRGQ-------------GVAIFTAECSHSFHFCCIAANVQ----HGNRICPICRCEWKDVPFQ 56 (634)
Q Consensus 1 ~~C~ICl~~~~~~~-------------~~~~~~~~C~H~Fh~~Ci~~w~~----~~~~~CP~Cr~~~~~~p~~ 56 (634)
+.|+||++.|.... ......++|+|.||..||..|+. .....||+||+.|....-.
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~ 98 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGT 98 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCC
Confidence 46999999996532 12334689999999999999995 2356899999998765433
No 44
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.03 E-value=9.5e-11 Score=88.77 Aligned_cols=47 Identities=30% Similarity=0.717 Sum_probs=38.6
Q ss_pred CCccccccccccCCcceeEecC-CCCccchhhHHHHHhcCCCcCccccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAE-CSHSFHFCCIAANVQHGNRICPICRCEW 50 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~ 50 (634)
..|+||++.+..+ ..+..++ |+|.||..||..|++. +..||+||+.+
T Consensus 6 ~~C~IC~~~~~~~--~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~ 53 (55)
T 1iym_A 6 VECAVCLAELEDG--EEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53 (55)
T ss_dssp CCCTTTCCCCCTT--SCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred CcCccCCccccCC--CceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEe
Confidence 3799999999773 3345555 9999999999999976 56899999875
No 45
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.03 E-value=9.3e-11 Score=98.79 Aligned_cols=47 Identities=34% Similarity=0.861 Sum_probs=39.9
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWK 51 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~ 51 (634)
.|+||++.|.. +..+..++|+|.||..||..|++. +..||+||+.+.
T Consensus 42 ~C~IC~~~~~~--~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 42 CCPICCSEYVK--GDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFP 88 (91)
T ss_dssp EETTTTEECCT--TCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSS
T ss_pred CCcccChhhcC--CCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCC
Confidence 59999999977 345666789999999999999986 558999998764
No 46
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.02 E-value=2.7e-11 Score=106.23 Aligned_cols=51 Identities=27% Similarity=0.750 Sum_probs=0.0
Q ss_pred CCcccccccccc-------------CCcceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 1 KTCPICLGSLRR-------------GQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 1 ~~C~ICl~~~~~-------------~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
+.|+||++.|.. +++..++.++|+|.||.+||..|+.. +.+||+||++|..
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF 112 (117)
T ss_dssp -----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeeee
Confidence 579999999975 33445566799999999999999987 5689999999864
No 47
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=9.5e-11 Score=94.94 Aligned_cols=47 Identities=30% Similarity=0.752 Sum_probs=39.7
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWK 51 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~ 51 (634)
.|+||++.+.. ...+..++|+|.||..||..|++. +..||+||+.+.
T Consensus 25 ~C~IC~~~~~~--~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 25 LCVVCMCDFES--RQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSG 71 (75)
T ss_dssp EETTTTEECCB--TCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCC
T ss_pred CCeECCcccCC--CCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCC
Confidence 69999999977 334566789999999999999986 458999998754
No 48
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=7.1e-11 Score=94.60 Aligned_cols=51 Identities=24% Similarity=0.585 Sum_probs=43.2
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCCCCCC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQAP 58 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~~~~ 58 (634)
.|+||++.+.. ++.++|+|.||..||..|+.. ...||+||..+....+.+|
T Consensus 17 ~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~p 67 (71)
T 2d8t_A 17 ECAICLQTCVH-----PVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPEDFLDSG 67 (71)
T ss_dssp BCSSSSSBCSS-----EEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHHHHSCS
T ss_pred CCccCCcccCC-----CEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHhhccCC
Confidence 69999999977 777899999999999999976 4689999999876555443
No 49
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.01 E-value=1.8e-10 Score=87.12 Aligned_cols=48 Identities=29% Similarity=0.715 Sum_probs=40.2
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEW 50 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~ 50 (634)
..|+||++.+..+ +..++.++|+|.||..||..|++.. ..||+||+.+
T Consensus 6 ~~C~IC~~~~~~~-~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~ 53 (55)
T 2ecm_A 6 SGCPICLEDIHTS-RVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPS 53 (55)
T ss_dssp CSCTTTCCCCCTT-TSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSS
T ss_pred CcCcccChhhcCC-CcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcC
Confidence 4799999999653 3446778999999999999999874 6899999875
No 50
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=2.5e-10 Score=91.71 Aligned_cols=49 Identities=31% Similarity=0.558 Sum_probs=41.2
Q ss_pred CccccccccccCCcceeEec-CCCCccchhhHHHHHhcCCCcCcccccccccCCCC
Q 043643 2 TCPICLGSLRRGQGVAIFTA-ECSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQ 56 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~-~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~~ 56 (634)
.|+||++.+.+ ++.+ +|||.||..||..|++. ...||+||+.+....+.
T Consensus 17 ~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 17 LCSICKGYLID-----ATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp SCTTTSSCCSS-----CEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSC
T ss_pred CCCCCChHHHC-----cCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccc
Confidence 69999999987 6665 99999999999999976 56899999987654443
No 51
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.99 E-value=2.2e-10 Score=93.50 Aligned_cols=46 Identities=17% Similarity=0.409 Sum_probs=41.4
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.|+||++.|.+ +++++|||.||..||..|+..+...||+||..+..
T Consensus 10 ~C~IC~~~~~~-----Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 10 RCPISLELMKD-----PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SCTTTSCCCSS-----EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CCCCccccccC-----CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 69999999988 88889999999999999998767789999998654
No 52
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.99 E-value=1.4e-10 Score=105.60 Aligned_cols=47 Identities=34% Similarity=0.673 Sum_probs=41.1
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVP 54 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p 54 (634)
+|+||++.|.. +++++|||.||..||..|+.. ...||+||+++...+
T Consensus 55 ~C~iC~~~~~~-----~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 55 QCIICSEYFIE-----AVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSKT 101 (138)
T ss_dssp BCTTTCSBCSS-----EEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCEE
T ss_pred CCcccCcccCC-----ceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCCC
Confidence 59999999987 888999999999999999976 568999999875443
No 53
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.98 E-value=3e-10 Score=101.46 Aligned_cols=46 Identities=24% Similarity=0.509 Sum_probs=41.4
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.|+||++.|.. +++++|||.||..||..|+......||+||..+..
T Consensus 54 ~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 54 QCICCQELVFR-----PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp BCTTTSSBCSS-----EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCcCChHHcC-----cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 59999999988 88899999999999999998656689999998755
No 54
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.98 E-value=2.3e-10 Score=98.22 Aligned_cols=46 Identities=30% Similarity=0.621 Sum_probs=41.0
Q ss_pred CccccccccccCCcceeEe-cCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFT-AECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~-~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.|+||++.|.. ++. ++|||.||..||..|+......||+||..+..
T Consensus 24 ~C~IC~~~~~~-----p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 24 RCFICMEKLRD-----ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp BCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCccCCccccC-----ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 69999999987 787 99999999999999998755689999998754
No 55
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=2.1e-10 Score=90.44 Aligned_cols=46 Identities=26% Similarity=0.483 Sum_probs=40.2
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.|+||++.+.. ++.++|||.||..||..|+......||+||+.+..
T Consensus 17 ~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 17 KCEKCHLVLCS-----PKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp ECTTTCCEESS-----CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCChHhcC-----eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 59999999987 67789999999999999997556789999998654
No 56
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.97 E-value=2.5e-10 Score=91.25 Aligned_cols=52 Identities=29% Similarity=0.734 Sum_probs=42.0
Q ss_pred CccccccccccC--CcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCC
Q 043643 2 TCPICLGSLRRG--QGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVP 54 (634)
Q Consensus 2 ~C~ICl~~~~~~--~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p 54 (634)
.|+||++.+... .+..++.++|||.||..||..|++. ...||+||+.+....
T Consensus 12 ~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 12 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKR 65 (71)
T ss_dssp BCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCS
T ss_pred CCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhh
Confidence 699999999762 2334578999999999999999986 458999999876433
No 57
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.95 E-value=4e-10 Score=90.22 Aligned_cols=50 Identities=32% Similarity=0.676 Sum_probs=40.6
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHhcC-CCcCcccccccccCC
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHG-NRICPICRCEWKDVP 54 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~-~~~CP~Cr~~~~~~p 54 (634)
+.|+||.+.+..+.. ...|+|.||.+||.+|++.. ..+||+||+.|....
T Consensus 16 ~~C~IC~~~i~~g~~----C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 16 KICNICHSLLIQGQS----CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp CBCSSSCCBCSSSEE----CSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CcCcchhhHcccCCc----cCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 479999999987433 33899999999999999753 368999999987533
No 58
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=4.2e-10 Score=90.46 Aligned_cols=46 Identities=35% Similarity=0.832 Sum_probs=40.0
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh--cCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ--HGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~--~~~~~CP~Cr~~~~~ 52 (634)
.|+||++.+.. ++.++|||.||..||..|++ .....||+||+.+..
T Consensus 22 ~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 22 ICPICLDILQK-----PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp BCTTTCSBCSS-----EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred EeccCCcccCC-----eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 69999999987 78889999999999999996 345689999998654
No 59
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=2.6e-10 Score=90.50 Aligned_cols=49 Identities=31% Similarity=0.794 Sum_probs=40.3
Q ss_pred CccccccccccC--CcceeEecCCCCccchhhHHHHHhcCCCcCcccccccc
Q 043643 2 TCPICLGSLRRG--QGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWK 51 (634)
Q Consensus 2 ~C~ICl~~~~~~--~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~ 51 (634)
.|+||++.+... .+..++.++|||.||..||..|+.. ...||+||..+.
T Consensus 17 ~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 17 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 67 (69)
T ss_dssp CCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred CCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence 699999999762 1233477899999999999999986 568999998764
No 60
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.95 E-value=5.3e-10 Score=90.27 Aligned_cols=45 Identities=22% Similarity=0.523 Sum_probs=38.8
Q ss_pred CccccccccccCCcceeEecC-CCCccchhhHHHHHhc-CCCcCcccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAE-CSHSFHFCCIAANVQH-GNRICPICRCEWK 51 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~w~~~-~~~~CP~Cr~~~~ 51 (634)
.|+||++.|.. +++++ |||.||..||..|+.. +...||+||+++.
T Consensus 17 ~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 17 LCLICKDIMTD-----AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCSSSCCCCTT-----CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCcCCChHHhC-----CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 69999999987 78888 9999999999999974 3368999999643
No 61
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=6.5e-10 Score=91.39 Aligned_cols=44 Identities=23% Similarity=0.502 Sum_probs=39.6
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWK 51 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~ 51 (634)
.|+||++.+.. ++.++|||.||..||..|+.. ...||+||..+.
T Consensus 17 ~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 17 RCFICRQAFQN-----PVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp BCSSSCSBCCS-----EEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred CCcCCCchhcC-----eeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 59999999987 788999999999999999976 568999999864
No 62
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.90 E-value=5.3e-10 Score=88.55 Aligned_cols=47 Identities=30% Similarity=0.820 Sum_probs=39.6
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
+.|+||++.+.. +++.++|||.||..|+..|+.. ...||+||+.+..
T Consensus 6 ~~C~IC~~~~~~----~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 6 ERCPICLEDPSN----YSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCSSCCSCCCS----CEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCeeCCccccC----CcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 479999999865 2477899999999999999976 4689999988653
No 63
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.89 E-value=5.2e-10 Score=87.31 Aligned_cols=51 Identities=29% Similarity=0.754 Sum_probs=41.5
Q ss_pred CccccccccccC--CcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccC
Q 043643 2 TCPICLGSLRRG--QGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDV 53 (634)
Q Consensus 2 ~C~ICl~~~~~~--~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 53 (634)
.|+||++.+... .+..++.++|||.||..|+..|++. +..||+||+.+...
T Consensus 5 ~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 5 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHK 57 (64)
T ss_dssp BCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTT
T ss_pred CCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCcc
Confidence 699999999762 1233477899999999999999987 56899999987643
No 64
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.89 E-value=9.6e-10 Score=101.43 Aligned_cols=47 Identities=23% Similarity=0.486 Sum_probs=42.3
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDV 53 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 53 (634)
.|+||++.|.. +++++|||.||..||..|+......||+||..+...
T Consensus 80 ~C~IC~~~~~~-----pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 80 MCVCCQELVYQ-----PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp BCTTTSSBCSS-----EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred EeecCChhhcC-----CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 69999999988 888999999999999999987666899999987654
No 65
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.88 E-value=1e-09 Score=86.17 Aligned_cols=50 Identities=22% Similarity=0.587 Sum_probs=39.7
Q ss_pred Ccccccc-ccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLG-SLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~-~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.|+||++ .+... ....+.++|||.||..||..|+..+...||+||+.+..
T Consensus 5 ~C~IC~~~~~~~~-~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 5 GCPRCKTTKYRNP-SLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CCSTTTTHHHHCS-SCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred cCCcCCCCccCCC-ccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 6999999 77651 22235689999999999999987656689999998654
No 66
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.85 E-value=9.9e-10 Score=92.58 Aligned_cols=45 Identities=22% Similarity=0.523 Sum_probs=39.0
Q ss_pred CccccccccccCCcceeEecC-CCCccchhhHHHHHhc-CCCcCcccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAE-CSHSFHFCCIAANVQH-GNRICPICRCEWK 51 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~w~~~-~~~~CP~Cr~~~~ 51 (634)
.|+||++.|.. +++++ |||.||..||..|+.. +...||+||..+.
T Consensus 15 ~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 15 LCLICKDIMTD-----AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp EETTTTEECSS-----CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCCCChhhcC-----ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 59999999987 88888 9999999999999863 4468999998863
No 67
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.3e-09 Score=85.03 Aligned_cols=40 Identities=40% Similarity=0.940 Sum_probs=35.6
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhc--CCCcCccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQH--GNRICPIC 46 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~--~~~~CP~C 46 (634)
.|+||++.+.. ++.++|||.||..||..|++. ....||+|
T Consensus 22 ~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 22 ICPICLDILQK-----PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp BCTTTCSBCSS-----CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCcCCchhCC-----eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 69999999987 788899999999999999973 45689998
No 68
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.9e-09 Score=89.85 Aligned_cols=50 Identities=22% Similarity=0.506 Sum_probs=41.0
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcC--CCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHG--NRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~--~~~CP~Cr~~~~~ 52 (634)
.|+||++.+... ...++.++|||.||..||..|+... ...||+||..+..
T Consensus 17 ~C~IC~~~~~~~-~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 17 ECPICMESFTEE-QLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp BCTTTCCBCCTT-SSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCccCCcccccc-CCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 699999999763 3336778999999999999999753 4689999998654
No 69
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.84 E-value=1.6e-09 Score=92.58 Aligned_cols=45 Identities=24% Similarity=0.618 Sum_probs=39.5
Q ss_pred CccccccccccCCcceeEec-CCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTA-ECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~-~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.|+||++.+.. ++.+ +|||.||..||..|+.. ...||+||..+..
T Consensus 24 ~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 24 RCGICFEYFNI-----AMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTE 69 (99)
T ss_dssp BCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred CcccCChhhCC-----cCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCCh
Confidence 69999999987 7666 89999999999999986 5689999998664
No 70
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.9e-09 Score=88.10 Aligned_cols=55 Identities=20% Similarity=0.453 Sum_probs=42.1
Q ss_pred CCccccccccccCCcceeEecCCC-----CccchhhHHHHHhcC-CCcCcccccccccCCCCCC
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECS-----HSFHFCCIAANVQHG-NRICPICRCEWKDVPFQAP 58 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~w~~~~-~~~CP~Cr~~~~~~p~~~~ 58 (634)
+.|.||++.+..+ . ++.++|+ |.||..||..|+... ...||+||..|......+|
T Consensus 16 ~~C~IC~~~~~~~--~-~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 16 DICRICHCEGDDE--S-PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp CCCSSSCCCCCSS--S-CEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred CCCeEcCccccCC--C-eeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence 4799999998753 2 2357896 999999999999753 4689999999865544443
No 71
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.84 E-value=1.4e-09 Score=102.10 Aligned_cols=46 Identities=41% Similarity=0.916 Sum_probs=40.4
Q ss_pred CccccccccccCCcceeEec-CCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTA-ECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~-~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.|+||++.|.. ++++ +|||.||..||..|+..+...||+||..+..
T Consensus 56 ~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 56 MCPICLDMLKN-----TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp BCTTTSSBCSS-----EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCcccChHhhC-----cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 69999999987 6665 9999999999999998767789999998754
No 72
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.82 E-value=4.9e-10 Score=91.51 Aligned_cols=46 Identities=33% Similarity=0.800 Sum_probs=39.7
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcC------CCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHG------NRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~------~~~CP~Cr~~~~~ 52 (634)
.|+||++.+.. ++.++|||.||..||..|+... ...||+||..+..
T Consensus 14 ~C~IC~~~~~~-----p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 14 TCPICLELLTE-----PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp EETTTTEECSS-----CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCcCCCcccCC-----eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 59999999987 7778999999999999998752 5689999998654
No 73
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.81 E-value=6.8e-10 Score=97.73 Aligned_cols=46 Identities=28% Similarity=0.657 Sum_probs=41.2
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.|+||++.+.. +++++|||.||..||..|+..+...||+||..+..
T Consensus 17 ~C~iC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 17 QCGICMEILVE-----PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp BCTTTCSBCSS-----CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCccCCcccCc-----eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 59999999987 88889999999999999997767789999998754
No 74
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.81 E-value=1.8e-09 Score=89.20 Aligned_cols=46 Identities=43% Similarity=0.960 Sum_probs=39.8
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhc-----CCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQH-----GNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~-----~~~~CP~Cr~~~~~ 52 (634)
.|+||++.+.. ++.++|+|.||..||..|+.. +...||+||..+..
T Consensus 21 ~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 21 TCPICLELLKE-----PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp SCTTTCSCCSS-----CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCcCCChhhCc-----ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 69999999987 778899999999999999975 25689999998654
No 75
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=2.1e-09 Score=88.84 Aligned_cols=46 Identities=41% Similarity=1.004 Sum_probs=39.8
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhc-----CCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQH-----GNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~-----~~~~CP~Cr~~~~~ 52 (634)
.|+||++.+.. ++.++|||.||..|+..|+.. +...||+||..+..
T Consensus 21 ~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 21 TCPICLELLTQ-----PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCTTTCSCCSS-----CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCcccCC-----ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 69999999977 677899999999999999864 35689999998764
No 76
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.80 E-value=2.2e-09 Score=93.29 Aligned_cols=45 Identities=33% Similarity=0.733 Sum_probs=39.6
Q ss_pred CccccccccccCCcceeEec-CCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTA-ECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~-~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.|+||++.+.. ++++ +|||.||..||..|+.. ...||+||..+..
T Consensus 17 ~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 17 MCVLCGGYFID-----ATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHK 62 (108)
T ss_dssp BCTTTSSBCSS-----EEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred CCccCChHHhC-----cCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccc
Confidence 69999999987 7775 99999999999999986 4689999998654
No 77
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.78 E-value=2.4e-09 Score=87.16 Aligned_cols=54 Identities=24% Similarity=0.629 Sum_probs=40.4
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCCCC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQ 56 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~~ 56 (634)
+|+||++.+... ....+..+|||.||..|+..|+......||.||+.+...++.
T Consensus 13 ~CpICle~~~~~-d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 13 ECPLCMEPLEID-DINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp BCTTTCCBCCTT-TTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred cCCccCccCccc-cccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 699999988531 111222359999999999998765567899999998765543
No 78
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.77 E-value=3.2e-09 Score=88.05 Aligned_cols=45 Identities=9% Similarity=0.032 Sum_probs=40.6
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.||||++.|.+ |++++|||+||+.||..|+.. ..+||+|+..+..
T Consensus 16 ~CpI~~~~m~d-----PV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 16 RDPLMDTLMTD-----PVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTE 60 (85)
T ss_dssp BCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred ECcccCchhcC-----CeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCCh
Confidence 59999999999 999999999999999999985 5689999987654
No 79
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.77 E-value=3.3e-09 Score=92.68 Aligned_cols=47 Identities=26% Similarity=0.730 Sum_probs=40.0
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcC--CCcCcccccccccC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHG--NRICPICRCEWKDV 53 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~--~~~CP~Cr~~~~~~ 53 (634)
.|+||++.+.. ++.++|||.||..||..|+... ...||+||..+...
T Consensus 23 ~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 23 ECPICLELIKE-----PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp SCSSSCCCCSS-----CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCcccChhhcC-----eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 69999999987 7778999999999999999743 35799999986643
No 80
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=2.4e-09 Score=81.76 Aligned_cols=40 Identities=33% Similarity=0.819 Sum_probs=34.9
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhc--CCCcCccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQH--GNRICPIC 46 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~--~~~~CP~C 46 (634)
.|+||++.+.. ++.++|||.||..||..|+.. ....||+|
T Consensus 17 ~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 17 SCSVCLEYLKE-----PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp BCSSSCCBCSS-----CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCccCCcccCc-----cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 69999999987 677899999999999999753 46689998
No 81
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.76 E-value=4.4e-09 Score=92.68 Aligned_cols=48 Identities=27% Similarity=0.532 Sum_probs=42.1
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVP 54 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p 54 (634)
.|+||++.+.. ++.++|||.||..||..|+......||+||..+....
T Consensus 25 ~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 25 SCQICEHILAD-----PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp BCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCcHhcC-----cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 69999999987 8889999999999999999865668999999876543
No 82
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.74 E-value=3.6e-09 Score=90.52 Aligned_cols=45 Identities=9% Similarity=0.040 Sum_probs=40.7
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.||||++.|.+ |++++|||+||+.||..|+.. ..+||+|+.++..
T Consensus 31 ~CpI~~~~m~d-----PV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~ 75 (100)
T 2kre_A 31 RDPLMDTLMTD-----PVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTE 75 (100)
T ss_dssp BCTTTCSBCSS-----EEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCT
T ss_pred CCcCccCcccC-----CeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCCh
Confidence 59999999999 999999999999999999985 6789999988654
No 83
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=2.2e-09 Score=85.44 Aligned_cols=44 Identities=34% Similarity=0.745 Sum_probs=37.9
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.|+||++.+.. +.++|+|.||..||..|+.. ...||+||+.+..
T Consensus 17 ~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 17 ECCICMDGRAD------LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTG 60 (70)
T ss_dssp CCSSSCCSCCS------EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTC
T ss_pred CCeeCCcCccC------cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccC
Confidence 69999999865 55789999999999999985 6689999988654
No 84
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.72 E-value=4.4e-09 Score=92.98 Aligned_cols=46 Identities=30% Similarity=0.712 Sum_probs=40.8
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.|+||++.+.. ++.++|||.||..||..|+......||+||..+..
T Consensus 20 ~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 20 ECPICLMALRE-----AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp BCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCcCChhhcC-----eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 69999999987 78889999999999999998655589999998765
No 85
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.71 E-value=6.5e-09 Score=88.55 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=40.8
Q ss_pred CccccccccccCCcceeEecCCC-CccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECS-HSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~-H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.||||++.|.+ |++++|| |+||+.||..|+.. ..+||+|+.++..
T Consensus 24 ~CpI~~~~m~d-----PV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 24 LDPIMSTLMCD-----PVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTM 69 (98)
T ss_dssp BCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCT
T ss_pred CCcCccccccC-----CeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCCh
Confidence 59999999999 9999999 99999999999976 5689999988654
No 86
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=98.70 E-value=6.7e-08 Score=93.54 Aligned_cols=110 Identities=16% Similarity=0.222 Sum_probs=82.2
Q ss_pred CCceEEEEEeCCCCCCccHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCc-EEEEcCcccCHHHHHHHHHHHhcCCCCC
Q 043643 166 APIDLVTVLDVSGSMSSKLPLLKRAVHFIIQNL---GSADRLSIVIFSSVA-RRIFPLQRMTDSGRENAIRAINTLSSNG 241 (634)
Q Consensus 166 ~p~dlv~VlD~SgSM~gkl~~~K~al~~li~~L---~~~drvsIV~Fs~~a-~~~~pl~~~t~~~~~~~~~~I~~l~~~G 241 (634)
-|+||+||+|.||||...++.+|+.+..+++.| ..+-|++++.|-+.. +..++|+ .+...+.+.|+++...|
T Consensus 2 ~pvDl~fl~D~S~SM~~di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~~~~~l~lT----~d~~~F~~~v~~~~vsg 77 (212)
T 2iue_A 2 NSVDLYFLMGLSGSAQGHLSNVQTLGSDLLKALNEISRSGRIGFGSIVNMTFQHILKLT----ADSSQFQRELRKQLVSG 77 (212)
T ss_dssp CCEEEEEEEECCGGGTTTHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSCEEEEEEEE----SCHHHHHHHHHTCCCCC
T ss_pred CceEEEEEEeCCCcchhHHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCcceecCCcC----CCHHHHHHHHhhccccC
Confidence 489999999999999998999999888777655 567899999998873 4556777 66788999999998877
Q ss_pred CCcH----HHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCC
Q 043643 242 GTNI----VEGLKKGARVLEERRERSPVASIILLSDGQDTHN 279 (634)
Q Consensus 242 gT~i----~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g 279 (634)
|-+. .+||..|+.-...-.+++..+.|||+||+.+...
T Consensus 78 ~~D~PE~g~dal~qa~~c~~~i~Wr~a~rllvl~TDa~~H~~ 119 (212)
T 2iue_A 78 KLATPKGQLDAVVQVAICLGEIGWRNGTRFLVLVTDNDFHLA 119 (212)
T ss_dssp CSSSSBCHHHHHHHHHHCHHHHTCCSSEEEEEEECSSCBCCT
T ss_pred CCCCCchHHHHHHHHHHhhhhcccCCccEEEEEECcCCcccc
Confidence 6433 3455555432222234446677999999987653
No 87
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.68 E-value=6.3e-09 Score=105.95 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=40.9
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.||||++.|.+ |++++|||+||+.||..|+..+..+||+||.++..
T Consensus 210 ~c~i~~~~~~d-----Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 210 CGKISFELMRE-----PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp BCTTTCSBCSS-----EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCcCcCCHhcC-----CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 59999999999 99999999999999999998655569999988754
No 88
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.68 E-value=4e-09 Score=96.14 Aligned_cols=44 Identities=34% Similarity=0.745 Sum_probs=39.9
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEW 50 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~ 50 (634)
.|+||++.+.. +++++|||.||..||..|+..+...||+||.++
T Consensus 33 ~C~IC~~~~~~-----pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 33 LCSACRNVLRR-----PFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp BCTTTCSBCSS-----EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CCCCCChhhcC-----cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 69999999988 888999999999999999987666899999874
No 89
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.64 E-value=6.8e-09 Score=91.62 Aligned_cols=42 Identities=26% Similarity=0.588 Sum_probs=37.8
Q ss_pred CccccccccccCCcceeEec-CCCCccchhhHHHHHhcCCCcCcccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTA-ECSHSFHFCCIAANVQHGNRICPICRCEWK 51 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~-~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~ 51 (634)
.|+||++.|.. ++++ +|||.||..||..|+. ..||+||..+.
T Consensus 24 ~C~IC~~~~~~-----pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 24 RCSRCTNILRE-----PVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp SCSSSCSCCSS-----CBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCChHhhC-----ccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 69999999987 7777 9999999999999987 57999999874
No 90
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.63 E-value=1.1e-08 Score=92.09 Aligned_cols=53 Identities=28% Similarity=0.752 Sum_probs=42.3
Q ss_pred CccccccccccC--CcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCCC
Q 043643 2 TCPICLGSLRRG--QGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVPF 55 (634)
Q Consensus 2 ~C~ICl~~~~~~--~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~ 55 (634)
+|+||++.+... .+..++.++|||.||..||..|++. ...||+||+.+.....
T Consensus 9 ~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 9 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRY 63 (133)
T ss_dssp BCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCE
T ss_pred CCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCccccc
Confidence 699999999762 1233478899999999999999986 4589999998765443
No 91
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=98.62 E-value=1.6e-06 Score=98.39 Aligned_cols=265 Identities=12% Similarity=0.108 Sum_probs=144.1
Q ss_pred CCcceEEEeecccccccccCCCCceEEEEEEeCCCCCCCCCCCCceEEEEEeCCCCCCccHHHHHHHHHHHHHh---cCC
Q 043643 124 RAQALAVKAFPEFGAVAAAECPPKFAVLLRVCAPSLPNDADRAPIDLVTVLDVSGSMSSKLPLLKRAVHFIIQN---LGS 200 (634)
Q Consensus 124 ~~~~~~v~~~~~~~~~~~~~~~~~~~v~v~~~ap~~~~~~~r~p~dlv~VlD~SgSM~gkl~~~K~al~~li~~---L~~ 200 (634)
.+..|.|++-|. +...+.|.++.+ ..-|+||+||+|.|+||...|+.+|..+..|++. +..
T Consensus 84 ~Pq~~~~~Lr~g----------~~~~f~~~~~~~------~~~pvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~ 147 (690)
T 3fcs_B 84 SPQRIALRLRPD----------DSKNFSIQVRQV------EDYPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTS 147 (690)
T ss_dssp ESCEEEEEECTT----------CEEEEEEEEECC------BTCCEEEEEEEECSGGGHHHHHHTTTTTHHHHHHHHHHCS
T ss_pred cCceEEEEeccC----------CcEEEEEEEecc------CCCCccEEEEecCCcchHHHHHHHHHHHHHHHHHHHhhCc
Confidence 344666665543 234555666654 4468999999999999998777777766655544 467
Q ss_pred CCeEEEEEeCCCc------------------------------EEEEcCcccCHHHHHHHHHHHhcCCCCCCCcH----H
Q 043643 201 ADRLSIVIFSSVA------------------------------RRIFPLQRMTDSGRENAIRAINTLSSNGGTNI----V 246 (634)
Q Consensus 201 ~drvsIV~Fs~~a------------------------------~~~~pl~~~t~~~~~~~~~~I~~l~~~GgT~i----~ 246 (634)
+-|++++.|.+.. +.+++|+ .+...+.+.|+.+...|+-+. .
T Consensus 148 ~~r~Gfgsf~Dk~~~P~~~~~p~~~~~~pc~~~~~~c~~~f~f~~~l~lt----~~~~~f~~~v~~~~isgn~D~PE~g~ 223 (690)
T 3fcs_B 148 NLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLT----DQVTRFNEEVKKQSVSRNRDAPEGGF 223 (690)
T ss_dssp CEEEEEEEECCCSSTTTSCCCSTTTTTCTTSSSSSCCCCCCSEEEEEEEE----SCHHHHHHHHTTCCCCCCSSSSBCHH
T ss_pred CceEEeEEeeccccCCccccChhhhccCCCcCCCCCCCCCccceeecccC----CCHHHHHHHhhceeccCCCCCCchHH
Confidence 8899999998843 1234565 567889999999888776543 4
Q ss_pred HHHHHHHHHHHhhccC-CCCcEEEEEeCCCCCCCCCCC----------cccccc-cCC---CCCCHHHHHhhchhhhhcc
Q 043643 247 EGLKKGARVLEERRER-SPVASIILLSDGQDTHNVLRN----------SYTQDE-ASS---IPSNELAYLNLLPSSICLS 311 (634)
Q Consensus 247 ~aL~~A~~~l~~~~~~-~~~~~IILlTDG~~~~g~~~~----------~~~~~~-~~~---~~~~~~~~~~lv~~~i~~~ 311 (634)
+||..|+---+...++ +..+.|||+||.......... ....+. +.. ...+-+.+.++.. .+
T Consensus 224 dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H~agDg~l~gi~~pnd~~chl~~~~~y~~s~~~DypSi~ql~~-~l--- 299 (690)
T 3fcs_B 224 DAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTE-KL--- 299 (690)
T ss_dssp HHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCBCTTCBBGGGGTSCCCCHHHHHH-HH---
T ss_pred HHHHHHhhcccccCCCCCceEEEEEECCCccccCCCccccceecCCCcceeecCCCccccccccCCCCHHHHHH-HH---
Confidence 4554444111222333 456779999998765322110 000000 000 0000001121111 11
Q ss_pred ccccCCCCe-eEEEEEccCCCChHHHHHHHhhcCCe-EEEc-CChhhHHHHHHHHhhccccceeeeeEEEEEecCCCeEE
Q 043643 312 KREAGQPTF-PVHTFGFGLEHDSEAMHAIADASGGT-FSFI-ETLSILQDAFARCIGGLLSVVSQDVKLTIRSKSAGVRI 388 (634)
Q Consensus 312 ~~~~~~~~i-~I~t~G~G~~~d~~~L~~iA~~tgG~-~~~i-~~~~~l~~~f~~~l~~l~s~va~~~~l~v~~~~~~v~i 388 (634)
...+| +|+++--+ .....+.+++.-.|. .-.+ .|..++.+.+......|.+ .+.|+..-.+.++.|
T Consensus 300 ----~~~~i~~ifavt~~---~~~~y~~l~~~i~~s~v~~l~~dSsni~~li~~~y~~i~s----~v~l~~~~~p~~~~v 368 (690)
T 3fcs_B 300 ----SQKNINLIFAVTEN---VVNLYQNYSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRS----KVELEVRDLPEELSL 368 (690)
T ss_dssp ----HHTTCEEEEEEEGG---GHHHHHHHHHHSTTCEEEEECTTCTTHHHHHHHHHHHHTT----CEEEEEESCCTTEEE
T ss_pred ----HHcCCeEEEEEeCC---chhhHHHHHhhcCCceeeeeccccHHHHHHHHHHHHhhhc----ceeeeccCCCCcceE
Confidence 12344 45555322 234556666554444 3333 4555666666666655544 444554434566665
Q ss_pred EEecCCCCCcccccCCceeE--EEcCCccCCcEEEEEEEEEcCC
Q 043643 389 GSIPSGRYNSEVLDEGQQAV--IDIGNLYADEEKEFMVYLSIPV 430 (634)
Q Consensus 389 ~~v~~~~~~~~~~~~~~~~~--i~lg~l~~~e~r~~lv~l~~p~ 430 (634)
.-.. .- .++.... -.=..|..|++..|-|+|.+..
T Consensus 369 ~~~s------~C-~~~~~~~~~~~C~~v~~g~~v~F~v~v~~~~ 405 (690)
T 3fcs_B 369 SFNA------TC-LNNEVIPGLKSCMGLKIGDTVSFSIEAKVRG 405 (690)
T ss_dssp EEEE------EC-STTCEEETCCEECSCCTTCEEEEEEEEEECS
T ss_pred EEEe------ec-CCCCcccCCCcccccccCCeEEEEEEEEeec
Confidence 4221 00 0110000 0123577788889999888753
No 92
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.61 E-value=1.5e-08 Score=95.44 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=40.4
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.||||++.|.+ |++++|||+||+.||..|+..+..+||+|+.++..
T Consensus 108 ~CPI~~elm~D-----PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 108 CGKISFELMRE-----PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp BCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cccCccccCCC-----CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 59999999998 99999999999999999997534479999987654
No 93
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=98.59 E-value=5.4e-06 Score=88.85 Aligned_cols=266 Identities=11% Similarity=0.113 Sum_probs=147.4
Q ss_pred CCcceEEEeecccccccccCCCCceEEEEEEeCCCCCCCCCCCCceEEEEEeCCCCCCccHHHHHHHHHHHHHhc---CC
Q 043643 124 RAQALAVKAFPEFGAVAAAECPPKFAVLLRVCAPSLPNDADRAPIDLVTVLDVSGSMSSKLPLLKRAVHFIIQNL---GS 200 (634)
Q Consensus 124 ~~~~~~v~~~~~~~~~~~~~~~~~~~v~v~~~ap~~~~~~~r~p~dlv~VlD~SgSM~gkl~~~K~al~~li~~L---~~ 200 (634)
.+..+.|++-|. +...+.|.++.+ ..-|+||+||+|.|+||...|+.+|.....+.+.| ..
T Consensus 84 ~Pq~v~l~LRpG----------~~~~f~v~~~~~------~~ypvDLy~LmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~ 147 (472)
T 3t3p_B 84 SPQRIALRLRPD----------DSKNFSIQVRQV------EDYPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTS 147 (472)
T ss_dssp ECCEEEEEECTT----------CEEEEEEEEECC------SSCCEEEEEEEECSGGGHHHHHHTTTHHHHHHHHHTTTCS
T ss_pred cCcEEEEEecCC----------CcEEEEEEeecC------CCCCceEEEEEccCcchHHHHHHHHHHHHHHHHHHHhcCc
Confidence 345666666553 233445555543 45799999999999999997788888777776655 46
Q ss_pred CCeEEEEEeCCCc------------------------------EEEEcCcccCHHHHHHHHHHHhcCCCCCCCcH----H
Q 043643 201 ADRLSIVIFSSVA------------------------------RRIFPLQRMTDSGRENAIRAINTLSSNGGTNI----V 246 (634)
Q Consensus 201 ~drvsIV~Fs~~a------------------------------~~~~pl~~~t~~~~~~~~~~I~~l~~~GgT~i----~ 246 (634)
+-|+|+..|-+.. +.+++|+ .+...+.+.|+++...|+-+. .
T Consensus 148 ~~riGfgsFvDk~v~P~~~~~p~~~l~nPc~~~~~~c~p~f~fr~~l~LT----~d~~~F~~~V~~~~iSGn~D~PEgg~ 223 (472)
T 3t3p_B 148 NLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLT----DQVTRFNEEVKKQSVSRNRDAPEGGF 223 (472)
T ss_dssp CEEEEEEEECCCSSTTTSCCCSHHHHHCTTTTTTSCCCCCCSEEEEEEEE----SCHHHHHHHHHHCCCCCCSSSSBCHH
T ss_pred CcEEEEEEeeccccCccccCChhhhhcCCCcccccCCCCCcceeEeeccC----CCHHHHHHHHhhccccCCCCCCchHH
Confidence 7899999997742 1245666 567889999999888877543 3
Q ss_pred HHHHHHHHHHHhhccC-CCCcEEEEEeCCCCCCCCCC-------C---cccccc-cCCCC---CCHHHHHhhchhhhhcc
Q 043643 247 EGLKKGARVLEERRER-SPVASIILLSDGQDTHNVLR-------N---SYTQDE-ASSIP---SNELAYLNLLPSSICLS 311 (634)
Q Consensus 247 ~aL~~A~~~l~~~~~~-~~~~~IILlTDG~~~~g~~~-------~---~~~~~~-~~~~~---~~~~~~~~lv~~~i~~~ 311 (634)
+||..|+---+...++ +..+.|||+||......... + .+..+. +.... .+-+.+..+.. .+.
T Consensus 224 dAl~qaavC~~~igWR~~a~rllV~~TDa~~H~agDgkL~GIv~pnDg~CHL~~~~~Y~~s~~~DYPSv~ql~~-~l~-- 300 (472)
T 3t3p_B 224 DAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTE-KLS-- 300 (472)
T ss_dssp HHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCCCCCCCCCCBCTTCBBTTTTTSCCCCHHHHHH-HHH--
T ss_pred HHHHHHhcchhhcCCCCCceEEEEEECCCCcCcCCCccccceecCCCCceEECCCCcccccccCCCCCHHHHHH-HHH--
Confidence 4444443111223344 45567899999876542221 1 111111 00000 01111111111 111
Q ss_pred ccccCCCCeeEEEEEccCCCChHHHHHHHhhcCCe-EEEc-CChhhHHHHHHHHhhccccceeeeeEEEEEecCCCeEEE
Q 043643 312 KREAGQPTFPVHTFGFGLEHDSEAMHAIADASGGT-FSFI-ETLSILQDAFARCIGGLLSVVSQDVKLTIRSKSAGVRIG 389 (634)
Q Consensus 312 ~~~~~~~~i~I~t~G~G~~~d~~~L~~iA~~tgG~-~~~i-~~~~~l~~~f~~~l~~l~s~va~~~~l~v~~~~~~v~i~ 389 (634)
...-.+|+++-- ......+.+++.-.|. .-.+ .|..+|-+.+......|.+ .+.|...-.+.++.|.
T Consensus 301 ----e~nI~~IFAVt~---~~~~~Y~~L~~~ip~s~vg~L~~dSsNiv~LI~~aY~~i~s----~V~l~~~~~p~~l~v~ 369 (472)
T 3t3p_B 301 ----QKNINLIFAVTE---NVVNLYQNYSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRS----KVELEVRDLPEELSLS 369 (472)
T ss_dssp ----HTTCEEEEEECG---GGHHHHHHHHHTSTTCEEEECCTTSTTHHHHHHHHHHHHTT----CEEEEEESCCTTEEEE
T ss_pred ----hcCccEEEEEec---cchhHHHHHHHhCCCceeeeccccchhHHHHHHHHHHHhhe----EEEEeeCCCCCcEEEE
Confidence 123445766632 2334667777665444 3343 4555666666655555544 4445544345667665
Q ss_pred EecCCCCCcccccCCc--eeEEEcCCccCCcEEEEEEEEEcCC
Q 043643 390 SIPSGRYNSEVLDEGQ--QAVIDIGNLYADEEKEFMVYLSIPV 430 (634)
Q Consensus 390 ~v~~~~~~~~~~~~~~--~~~i~lg~l~~~e~r~~lv~l~~p~ 430 (634)
-. +.-. ++. .+.-.=..+.-|++..|-|++.+..
T Consensus 370 y~------s~C~-~~~~~~~~~~C~~v~ig~~v~F~v~v~~~~ 405 (472)
T 3t3p_B 370 FN------ATCL-NNEVIPGLKSCMGLKIGDTVSFSIEAKVRG 405 (472)
T ss_dssp EE------EEET-TTEEEETCCEECSCCTTCEEEEEEEEEECS
T ss_pred EE------eECC-CCCccCCCccCCCcccCCEEEEEEEEEecc
Confidence 22 1100 010 0000123577788899999988753
No 94
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=98.54 E-value=1.2e-05 Score=86.44 Aligned_cols=260 Identities=16% Similarity=0.156 Sum_probs=138.9
Q ss_pred EEEEEEeCCCCCCCCCCCCceEEEEEeCCCCCCccHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCc------------
Q 043643 149 AVLLRVCAPSLPNDADRAPIDLVTVLDVSGSMSSKLPLLKRAVHFIIQNL---GSADRLSIVIFSSVA------------ 213 (634)
Q Consensus 149 ~v~v~~~ap~~~~~~~r~p~dlv~VlD~SgSM~gkl~~~K~al~~li~~L---~~~drvsIV~Fs~~a------------ 213 (634)
.+.|.++.+ ..-|+||+||+|.|+||...|+.+|.....+.+.| ..+-|+|+..|-+..
T Consensus 120 ~f~v~~~~~------~~yPVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~P~~~~~p~~l 193 (503)
T 3v4v_B 120 QLQVRFLRA------EGYPVDLYYLMDLSYSMKDDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSKL 193 (503)
T ss_dssp EEEEEEECC------SSCCEEEEEEEECSGGGHHHHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCHHHH
T ss_pred EEEEEEEcc------CCCceeEEEEEecCcchhhHHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccCCcccCCHHHh
Confidence 344555543 56799999999999999998888888776666655 467899999997742
Q ss_pred -----------------EEEEcCcccCHHHHHHHHHHHhcCCCCCCCcH----HHHHHHHHHHHHhhccCCCCcEEEEEe
Q 043643 214 -----------------RRIFPLQRMTDSGRENAIRAINTLSSNGGTNI----VEGLKKGARVLEERRERSPVASIILLS 272 (634)
Q Consensus 214 -----------------~~~~pl~~~t~~~~~~~~~~I~~l~~~GgT~i----~~aL~~A~~~l~~~~~~~~~~~IILlT 272 (634)
+.+++|+ .+...+.+.|+++...|+-+. .+||..|+---+...+++..+.|||+|
T Consensus 194 ~~PC~~~~~~c~p~f~fr~~l~LT----~d~~~F~~~V~~~~iSGnlD~PEggfDAlmQaavC~~~IgWR~a~rllV~~T 269 (503)
T 3v4v_B 194 RHPCPTRLERCQSPFSFHHVLSLT----GDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQIGWRNVSRLLVFTS 269 (503)
T ss_dssp HCCSSCSSSCCCCCCSEEEEEEEE----SCSHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSEEEEEEEE
T ss_pred cCCCcCCCCCCCCCcceEEEEEec----CCHHHHHHHHhhcCccCCCCCCchHHHHHHHHhhcccccCCCcceEEEEEEC
Confidence 2245666 457789999999888876543 344444431112333444556789999
Q ss_pred CCCCCCCCCC-------C---cccccc-cCCCCCCHHHHHhhchhhhhccccccCCCCe-eEEEEEccCCCChHHHHHHH
Q 043643 273 DGQDTHNVLR-------N---SYTQDE-ASSIPSNELAYLNLLPSSICLSKREAGQPTF-PVHTFGFGLEHDSEAMHAIA 340 (634)
Q Consensus 273 DG~~~~g~~~-------~---~~~~~~-~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i-~I~t~G~G~~~d~~~L~~iA 340 (634)
|......... + .+..+. +........+|- ++....+.....+| +|+++ -. ......+.++
T Consensus 270 DA~fH~agDgkLaGIv~pNDg~CHL~~~~~Yt~s~~~DYP-----Sv~ql~~kL~ennI~~IFAV--t~-~~~~~Y~~L~ 341 (503)
T 3v4v_B 270 DDTFHTAGDGKLGGIFMPSDGHCHLDSNGLYSRSTEFDYP-----SVGQVAQALSAANIQPIFAV--TS-AALPVYQELS 341 (503)
T ss_dssp SSCBCCTTGGGTTTCCSCCCSSCCBCTTSBBGGGGGSCCC-----CHHHHHHHHHHHTEEEEEEE--CS-SSHHHHHHHH
T ss_pred CCCcCcCCCccccceecCCCCCeEECCCCccccccccCCC-----CHHHHHHHHHhcCCeEEEEE--cc-cchhHHHHHH
Confidence 9876542221 1 111110 000000000110 01111111112344 45554 32 3345677777
Q ss_pred hhcCCe-EEEc-CChhhHHHHHHHHhhccccceeeeeEEEEEecCCCeEEEEecCCCCCcccccCCceeEEEcCCccCCc
Q 043643 341 DASGGT-FSFI-ETLSILQDAFARCIGGLLSVVSQDVKLTIRSKSAGVRIGSIPSGRYNSEVLDEGQQAVIDIGNLYADE 418 (634)
Q Consensus 341 ~~tgG~-~~~i-~~~~~l~~~f~~~l~~l~s~va~~~~l~v~~~~~~v~i~~v~~~~~~~~~~~~~~~~~i~lg~l~~~e 418 (634)
+.-.|. .-.+ .|..+|-+.+......|.+ .+.|...-.+.++.|.-...-.-........ ...-.=..+.-|+
T Consensus 342 ~~ip~s~vg~Ls~dSsNiv~LI~~aY~~i~S----~V~l~~~~~p~~l~v~y~s~C~~~~~~~~~~-~~~~~C~~v~ig~ 416 (503)
T 3v4v_B 342 KLIPKSAVGELSEDSSNVVQLIMDAYNSLSS----TVTLEHSSLPPGVHISYESQCEGPEKREGKA-EDRGQCNHVRINQ 416 (503)
T ss_dssp TTSTTCEEEECCTTSCTHHHHHHHHHHHHHT----CEEEECCCCCTTEEEEBCEECSSSCCCCCCC-BSSEEECSCCTTC
T ss_pred HhCCCceeeEccccchhHHHHHHHHHHHhhe----EEEEecCCCCCceEEEEEEecCCCCccCccc-ccCCcccCcccCC
Confidence 665444 4444 3445565555555555544 3344443335667665221100000000000 0011234577888
Q ss_pred EEEEEEEEEcCCC
Q 043643 419 EKEFMVYLSIPVS 431 (634)
Q Consensus 419 ~r~~lv~l~~p~~ 431 (634)
+..|-|.+.+..-
T Consensus 417 ~v~F~v~v~~~~C 429 (503)
T 3v4v_B 417 TVTFWVSLQATHC 429 (503)
T ss_dssp EEEEEEEEEECSC
T ss_pred EEEEEEEEEeecC
Confidence 9999999987543
No 95
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.54 E-value=2.7e-08 Score=84.13 Aligned_cols=43 Identities=23% Similarity=0.612 Sum_probs=37.2
Q ss_pred CccccccccccCCcceeEecC-CCCccchhhHHHHHhcC-----CCcCcc--cccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAE-CSHSFHFCCIAANVQHG-----NRICPI--CRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~w~~~~-----~~~CP~--Cr~~ 49 (634)
.||||++.|.+ |++++ |||+||+.||..|+... ...||+ |+..
T Consensus 9 ~CPI~~~~~~d-----PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 9 TCPITKEEMKK-----PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp BCTTTCSBCSS-----EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred ECcCcCchhcC-----CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 59999999998 88885 99999999999999642 458999 9865
No 96
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.53 E-value=1.4e-08 Score=77.19 Aligned_cols=42 Identities=26% Similarity=0.660 Sum_probs=35.8
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.|+||++.+.. ++.++|||.||..|+..| ...||+||+.+..
T Consensus 8 ~C~IC~~~~~~-----p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 8 RCQQCQAEAKC-----PKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp SCSSSCSSCBC-----CSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred CceEeCCccCC-----eEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 69999999987 788999999999999774 4579999987543
No 97
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.53 E-value=2.3e-08 Score=80.52 Aligned_cols=41 Identities=27% Similarity=0.497 Sum_probs=36.5
Q ss_pred CccccccccccCCcceeEecCCCCc-cchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHS-FHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.|+||++.+.+ ++.++|||. ||..|+..| ..||+||+.+..
T Consensus 26 ~C~iC~~~~~~-----~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 26 LCKICMDRNIA-----IVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp BCTTTSSSBCC-----EEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCC-----EEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 69999999987 788899999 999999988 579999998654
No 98
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=98.49 E-value=1.6e-05 Score=84.62 Aligned_cols=245 Identities=13% Similarity=0.101 Sum_probs=135.0
Q ss_pred CCCCceEEEEEeCCCCCCccHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCc---------------------------
Q 043643 164 DRAPIDLVTVLDVSGSMSSKLPLLKRAVHFIIQNL---GSADRLSIVIFSSVA--------------------------- 213 (634)
Q Consensus 164 ~r~p~dlv~VlD~SgSM~gkl~~~K~al~~li~~L---~~~drvsIV~Fs~~a--------------------------- 213 (634)
..-|+||++|+|.|+||...|+.+|.-...+++.| ..+-|+|+..|-+..
T Consensus 119 ~~yPVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~p~~~~nPC~~~~~c~~~f~ 198 (454)
T 3vi3_B 119 EDYPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNCTTPFS 198 (454)
T ss_dssp SCCCEEEEEEEECSGGGHHHHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCSTTTTTCCSCSSSCCCCCCS
T ss_pred CCCceeEEEEecCCcchhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCChHHhcCCCcCccCCCCCcc
Confidence 55799999999999999998888888777766655 467899999998742
Q ss_pred -EEEEcCcccCHHHHHHHHHHHhcCCCCCCCcH----HHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCCCC-----
Q 043643 214 -RRIFPLQRMTDSGRENAIRAINTLSSNGGTNI----VEGLKKGARVLEERRERSPVASIILLSDGQDTHNVLRN----- 283 (634)
Q Consensus 214 -~~~~pl~~~t~~~~~~~~~~I~~l~~~GgT~i----~~aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~g~~~~----- 283 (634)
+.+++|+ .+...+.+.|+++...|+-+. .+||..|+---+...+++..+.|||+||..........
T Consensus 199 fr~~l~LT----~d~~~F~~~V~~~~isGn~D~PEgg~DAl~Qaavc~~~igWR~a~rllV~~TDa~fH~agDgkL~GIv 274 (454)
T 3vi3_B 199 YKNVLSLT----NKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRNVTRLLVFSTDAGFHFAGDGKLGGIV 274 (454)
T ss_dssp EEEEEEEE----SCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSEEEEEEEESSCBCCTTTTGGGTCC
T ss_pred eeeeeecC----CCHHHHHHHHhhccccCCCcCCchhHHHHHHHhccccccCCccceEEEEEECCCCcCcCCCcccccee
Confidence 2356677 568889999999988887554 34444433211233445556678899998765422211
Q ss_pred -----cccccccCCCC---CCHHHHHhhchhhhhccccccCCCCe-eEEEEEccCCCChHHHHHHHhhcCCeEE-Ec-CC
Q 043643 284 -----SYTQDEASSIP---SNELAYLNLLPSSICLSKREAGQPTF-PVHTFGFGLEHDSEAMHAIADASGGTFS-FI-ET 352 (634)
Q Consensus 284 -----~~~~~~~~~~~---~~~~~~~~lv~~~i~~~~~~~~~~~i-~I~t~G~G~~~d~~~L~~iA~~tgG~~~-~i-~~ 352 (634)
.+..+.+.+.. .+-+.+..+.. .....+| +|+++-- .-....+.+++.-.|... .+ .|
T Consensus 275 ~PNDg~CHL~~~~Yt~s~~~DYPSv~ql~~--------~l~e~nI~~IFAVt~---~~~~~Y~~L~~~ip~s~vg~Ls~d 343 (454)
T 3vi3_B 275 LPNDGQCHLENNMYTMSHYYDYPSIAHLVQ--------KLSENNIQTIFAVTE---EFQPVYKELKNLIPKSAVGTLSAN 343 (454)
T ss_dssp SCCCCCCCEETTEECCTTTSCCCCHHHHHH--------HHHHTTEEEEEEEEG---GGHHHHHHHHHHSTTEEEEEECTT
T ss_pred cCCCCccEeCCCcccccccCCCCCHHHHHH--------HHHhcCCcEEEEEcC---ccchHHHHHHHhCCCceeeEcccc
Confidence 11111100000 01111111111 1122344 5766632 123456677766555433 33 45
Q ss_pred hhhHHHHHHHHhhccccceeeeeEEEEEecCCCeEEEEecCCCCCcccccCCceeEEEcCCccCCcEEEEEEEEEcCC
Q 043643 353 LSILQDAFARCIGGLLSVVSQDVKLTIRSKSAGVRIGSIPSGRYNSEVLDEGQQAVIDIGNLYADEEKEFMVYLSIPV 430 (634)
Q Consensus 353 ~~~l~~~f~~~l~~l~s~va~~~~l~v~~~~~~v~i~~v~~~~~~~~~~~~~~~~~i~lg~l~~~e~r~~lv~l~~p~ 430 (634)
..++-+.+......|.+ .+.|...-.+.++.|.-.....-..... +... -.=..+.-|++..|-|++.+..
T Consensus 344 SsNiv~LI~~aY~~i~S----~V~l~~~~~p~~l~v~y~s~C~~~~~~~--~~~~-~~C~~v~ig~~v~F~v~v~~~~ 414 (454)
T 3vi3_B 344 SSNVIQLIIDAYNSLSS----EVILENGKLSEGVTISYKSYCKNGVNGT--GENG-RKCSNISIGDEVQFEISITSNK 414 (454)
T ss_dssp CTTHHHHHHHHHHHHHT----CEEEEECCCCTTEEEEEEEECGGGCEEE--GGGG-GEECCCCTTCEEEEEEEEEESS
T ss_pred chhHHHHHHHHHHHhhe----EEEEecCCCCCceEEEEEeecCCCCccC--CccC-CCCCCccCCCEEEEEEEEEeec
Confidence 55665555555555544 3445444335567654221000000000 0000 0123477788899999998654
No 99
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.45 E-value=5.4e-08 Score=87.39 Aligned_cols=51 Identities=29% Similarity=0.754 Sum_probs=40.8
Q ss_pred CccccccccccC--CcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccC
Q 043643 2 TCPICLGSLRRG--QGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDV 53 (634)
Q Consensus 2 ~C~ICl~~~~~~--~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 53 (634)
.|+||++.+... ....++..+|||.||..||..|++. ...||+||+.+...
T Consensus 74 ~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 74 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHK 126 (133)
T ss_dssp BCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGG
T ss_pred CCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChh
Confidence 699999998752 1233477899999999999999986 45899999987643
No 100
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.42 E-value=7.5e-08 Score=75.19 Aligned_cols=46 Identities=26% Similarity=0.562 Sum_probs=37.9
Q ss_pred CCccccccccccCCcceeEec--CCCCc-cchhhHHHHHhcCCCcCccccccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTA--ECSHS-FHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~--~C~H~-Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
+.|+||++...+ ++.. +|||. ||..|+..|... +..||+||+++..
T Consensus 9 ~~C~IC~~~~~~-----~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 57 (64)
T 2vje_A 9 EPCVICQGRPKN-----GCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQM 57 (64)
T ss_dssp SCCTTTSSSCSC-----EEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCE
T ss_pred CCCCcCCCCCCC-----EEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhc
Confidence 469999999876 5544 99999 899999999875 4589999998653
No 101
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.41 E-value=1e-07 Score=89.83 Aligned_cols=46 Identities=30% Similarity=0.712 Sum_probs=40.7
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.|+||++.|.. |+.++|||.||..||..|+......||+||..+..
T Consensus 20 ~C~IC~~~~~~-----pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 20 ECPICLMALRE-----AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp BCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCChhhcC-----cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 59999999988 88899999999999999997655589999988654
No 102
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.39 E-value=1.1e-07 Score=74.01 Aligned_cols=46 Identities=26% Similarity=0.452 Sum_probs=37.6
Q ss_pred CCccccccccccCCcceeEec--CCCCc-cchhhHHHHHhcCCCcCccccccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTA--ECSHS-FHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~--~C~H~-Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
+.|+||++...+ ++.. +|||. ||..|+..|.+. ...||+||+++..
T Consensus 8 ~~C~IC~~~~~~-----~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 56 (63)
T 2vje_B 8 KPCSLCEKRPRD-----GNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL 56 (63)
T ss_dssp SBCTTTSSSBSC-----EEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred CCCcccCCcCCC-----eEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence 479999998766 4444 99998 999999998876 4689999998653
No 103
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=98.38 E-value=1.7e-06 Score=97.82 Aligned_cols=135 Identities=17% Similarity=0.197 Sum_probs=88.9
Q ss_pred CCcceEEEeecccccccccCCCCceEEEEEEeCCCCCCCCCCCCceEEEEEeCCCCCCccHHHHHHHHHHHH---HhcCC
Q 043643 124 RAQALAVKAFPEFGAVAAAECPPKFAVLLRVCAPSLPNDADRAPIDLVTVLDVSGSMSSKLPLLKRAVHFII---QNLGS 200 (634)
Q Consensus 124 ~~~~~~v~~~~~~~~~~~~~~~~~~~v~v~~~ap~~~~~~~r~p~dlv~VlD~SgSM~gkl~~~K~al~~li---~~L~~ 200 (634)
.+..+.|++-|. +...+.|.++.+ ..-|+||+||+|.|+||...|+.+|..+..|+ ..+..
T Consensus 77 ~Pq~~~~~Lr~g----------~~~~f~~~~~~~------~~ypvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~ 140 (687)
T 3k6s_B 77 SPQKVTLYLRPG----------QAAAFNVTFRRA------KGYPIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITE 140 (687)
T ss_dssp BCSCBEEEECTT----------SCEEEEEEECCC------CCCCCEEEEEEECSSTTHHHHHTTTTCCTTHHHHHHSSCC
T ss_pred cCcEEEEEEecC----------CeeEEEEEEecc------CCCceeEEEEEcCCcchHHHHHHHHHHHHHHHHHHHhhCc
Confidence 445677766553 223455555544 45689999999999999987777776554444 44567
Q ss_pred CCeEEEEEeCCCc-----------------------------EEEEcCcccCHHHHHHHHHHHhcCCCCCCCcH----HH
Q 043643 201 ADRLSIVIFSSVA-----------------------------RRIFPLQRMTDSGRENAIRAINTLSSNGGTNI----VE 247 (634)
Q Consensus 201 ~drvsIV~Fs~~a-----------------------------~~~~pl~~~t~~~~~~~~~~I~~l~~~GgT~i----~~ 247 (634)
+-|++++.|.+.. +.+++|+ .+...+.+.|+.+...|+-+. .+
T Consensus 141 ~~r~GfgsFvDk~~~P~~~~~p~~~~~Pc~~~~~~c~~~f~f~~~l~lt----~~~~~F~~~v~~~~isgn~D~PE~g~d 216 (687)
T 3k6s_B 141 SGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKECQPPFAFRHVLKLT----NNSNQFQTEVGKQLISGNLDAPEGGLD 216 (687)
T ss_dssp SCEEEEEEECCCSSTTSSCCSSTTTTCCCCSCCCCCCCCCSCEEEEEEE----SCSHHHHHHHHTSCCCCCSSSSCCHHH
T ss_pred CcEEeeEEeeccccCCccccCchhccCCCCCCCCCcCCcccceeecccC----CCHHHHHHHHhhccccCCCCCCchHHH
Confidence 8999999998732 2345666 456788999999888776543 34
Q ss_pred HHHHHHHHHHhhccCCCCcEEEEEeCCCCCC
Q 043643 248 GLKKGARVLEERRERSPVASIILLSDGQDTH 278 (634)
Q Consensus 248 aL~~A~~~l~~~~~~~~~~~IILlTDG~~~~ 278 (634)
||..|+---+...+++..+.|||+||.....
T Consensus 217 Al~qa~vc~~~igWr~a~rllV~~TDa~~H~ 247 (687)
T 3k6s_B 217 AMMQVAACPEEIGWRNVTRLLVFATDDGFHF 247 (687)
T ss_dssp HHHHHTTCHHHHCCCSSCCEEEEECSSCCCC
T ss_pred HHHHHhhcccccCCccceEEEEEECCCcccc
Confidence 4444431002233344667799999987653
No 104
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.38 E-value=9.3e-08 Score=94.31 Aligned_cols=46 Identities=28% Similarity=0.455 Sum_probs=39.5
Q ss_pred CccccccccccCCcceeEe-cCCCCccchhhHHHHHhc-CCCcCcc--ccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFT-AECSHSFHFCCIAANVQH-GNRICPI--CRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~-~~C~H~Fh~~Ci~~w~~~-~~~~CP~--Cr~~~~~ 52 (634)
+||||++.|.. |++ ..|||+||+.||..|+.. +...||+ |+..+..
T Consensus 183 ~CPIcl~~f~D-----PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 183 TCPITCKPYEA-----PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCTTTSSBCSS-----EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ECcCccCcccC-----CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 69999999988 887 499999999999999864 3457999 9987654
No 105
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=1.6e-07 Score=75.71 Aligned_cols=41 Identities=27% Similarity=0.497 Sum_probs=35.2
Q ss_pred CccccccccccCCcceeEecCCCCc-cchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHS-FHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.|+||++.+.. ++.++|||. ||..|+.. ...||+||.++..
T Consensus 27 ~C~IC~~~~~~-----~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 27 LCKICMDRNIA-----IVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp SCSSSCSSCCC-----BCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred CCCcCCCCCCC-----EEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 69999999887 788899999 99999964 3579999998654
No 106
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=98.31 E-value=1.3e-06 Score=85.68 Aligned_cols=70 Identities=19% Similarity=0.303 Sum_probs=50.2
Q ss_pred CCCcEEEEEeCCCCCCCCCCCcccccccCCCCCCHHHHHhhchhhhhccccccCCCCeeEEEEEccCC-----CChHHHH
Q 043643 263 SPVASIILLSDGQDTHNVLRNSYTQDEASSIPSNELAYLNLLPSSICLSKREAGQPTFPVHTFGFGLE-----HDSEAMH 337 (634)
Q Consensus 263 ~~~~~IILlTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~lv~~~i~~~~~~~~~~~i~I~t~G~G~~-----~d~~~L~ 337 (634)
...+.|||||||.+|.|. .| ....++ ++..||.|||||||.. .+...|+
T Consensus 8 ~~~k~iillTDG~~~~g~-~p--------------~~aa~~-----------a~~~gi~v~tIGig~~~~~~~~~~~~L~ 61 (242)
T 3rag_A 8 ATIRQILVITDGCSNIGP-DP--------------VEAARR-----------AHRHGIVVNVIGIVGRGDAGEQGYQEAH 61 (242)
T ss_dssp CCEEEEEEEESSCCCSSS-CH--------------HHHHHH-----------HHHTTCEEEEEEECCSSSCTTCCCHHHH
T ss_pred CCccEEEEEccCCCCCCC-CH--------------HHHHHH-----------HHHCCCEEEEEEecCCccccchhHHHHH
Confidence 345779999999999764 21 222221 2357899999999742 3458999
Q ss_pred HHHhhcCCeEEEcCChhhHHHH
Q 043643 338 AIADASGGTFSFIETLSILQDA 359 (634)
Q Consensus 338 ~iA~~tgG~~~~i~~~~~l~~~ 359 (634)
.||+.+||.||++.. .+|.+.
T Consensus 62 ~IA~~tGG~yf~a~~-~~l~~~ 82 (242)
T 3rag_A 62 SIADAGGGMCRIVQP-ADISAT 82 (242)
T ss_dssp HHHHHTTSCEEEECG-GGHHHH
T ss_pred HHHHhcCCeEEEeeH-HHHHHH
Confidence 999999999999844 555444
No 107
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.19 E-value=3.7e-07 Score=74.40 Aligned_cols=41 Identities=24% Similarity=0.571 Sum_probs=35.9
Q ss_pred CccccccccccCCcceeEecCCCCc-cchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHS-FHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.|+||++.+.. ++.++|||. ||..|+..| ..||+||..+..
T Consensus 20 ~C~IC~~~~~~-----~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 20 LCMVCCEEEIN-----STFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH 61 (79)
T ss_dssp BCTTTSSSBCC-----EEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred EeEEeCcccCc-----EEEECCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence 69999999887 788899999 999999876 279999998765
No 108
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=1.7e-06 Score=68.20 Aligned_cols=42 Identities=21% Similarity=0.551 Sum_probs=36.0
Q ss_pred CccccccccccCCcceeEecCCCCc-cchhhHHHHHhcCCCcCcccccccccC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHS-FHFCCIAANVQHGNRICPICRCEWKDV 53 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 53 (634)
.|.||++.... ++.++|+|. ||..|+.. ...||+||+.+...
T Consensus 17 ~C~IC~~~~~~-----~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 17 DCVVCQNGTVN-----WVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSSSSSCCC-----CEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCE
T ss_pred CCCCcCcCCCC-----EEEECCCChhhhHHHHhc-----CCCCCCCCcchhce
Confidence 69999999877 888999999 99999984 35799999987653
No 109
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.08 E-value=1.2e-06 Score=67.49 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=40.4
Q ss_pred CccccccccccCCcceeEec-CCCCccchhhHHHHHhcCCCcCcccccccccCC
Q 043643 2 TCPICLGSLRRGQGVAIFTA-ECSHSFHFCCIAANVQHGNRICPICRCEWKDVP 54 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~-~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p 54 (634)
.||||++.|.+ |+.. .|||.|++.||.+|+.. +.+||+++.++....
T Consensus 5 ~CpIs~~~m~d-----PV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 5 LCAISGKVPRR-----PVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEE 52 (61)
T ss_dssp CCTTTCSCCSS-----EEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGG
T ss_pred EecCCCCCCCC-----CEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhh
Confidence 59999999988 8887 99999999999999975 346999998876543
No 110
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.06 E-value=6.1e-07 Score=91.23 Aligned_cols=50 Identities=24% Similarity=0.579 Sum_probs=36.9
Q ss_pred CccccccccccCCcceeE---ecCCCCccchhhHHHHHhcCC----------CcCcccccccc
Q 043643 2 TCPICLGSLRRGQGVAIF---TAECSHSFHFCCIAANVQHGN----------RICPICRCEWK 51 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~---~~~C~H~Fh~~Ci~~w~~~~~----------~~CP~Cr~~~~ 51 (634)
.|+||++.+..++..+-. ...|+|.||..|+.+|++... ..||.||+++.
T Consensus 310 ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 310 RCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 699999998763322212 247999999999999996311 26999999754
No 111
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.05 E-value=1.8e-06 Score=72.72 Aligned_cols=46 Identities=28% Similarity=0.616 Sum_probs=34.7
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh----cC---CCcCcc--cccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ----HG---NRICPI--CRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~----~~---~~~CP~--Cr~~ 49 (634)
+|+||++.+.. .......+|||.||..|+..++. .+ ...||. |+..
T Consensus 7 ~C~IC~~~~~~--~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 7 GCKLCLGEYPV--EQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CCSSSCCCCBG--GGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcccCccccc--ccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 69999999865 23233357999999999999774 22 347999 9876
No 112
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.98 E-value=2.9e-06 Score=65.07 Aligned_cols=46 Identities=24% Similarity=0.504 Sum_probs=34.8
Q ss_pred CCccccccccccCCcceeEecCCC--C---ccchhhHHHHHhc-CCCcCcccccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECS--H---SFHFCCIAANVQH-GNRICPICRCEWK 51 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~--H---~Fh~~Ci~~w~~~-~~~~CP~Cr~~~~ 51 (634)
+.|.||++.... ++..+|. | .||..|+.+|+.. ++..||+|+..|.
T Consensus 7 ~~CrIC~~~~~~-----~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 7 PVCWICNEELGN-----ERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CEETTTTEECSC-----CCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CEeEEeecCCCC-----ceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 369999987322 2346755 4 8999999999963 4678999998864
No 113
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.69 E-value=2.6e-05 Score=64.80 Aligned_cols=48 Identities=21% Similarity=0.523 Sum_probs=39.2
Q ss_pred ccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCC
Q 043643 3 CPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVP 54 (634)
Q Consensus 3 C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p 54 (634)
|++|--.+.. .....+|.|.||..|+..|.+.+...||.|+.++..+-
T Consensus 4 C~~C~~Pi~i----ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 4 CDKCGLPIKV----YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp CTTTCSBCSE----EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred cCccCCCeEE----EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 7888888754 24457999999999999999877789999999876543
No 114
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.50 E-value=4.4e-05 Score=80.08 Aligned_cols=37 Identities=27% Similarity=0.668 Sum_probs=31.8
Q ss_pred eEecCCCCccchhhHHHHHhcCCCcCcccccccccCC
Q 043643 18 IFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVP 54 (634)
Q Consensus 18 ~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p 54 (634)
++..+|||.||..|+..|.......||+||+++....
T Consensus 345 pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 345 VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 8889999999999999999844668999999876543
No 115
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.31 E-value=0.0027 Score=62.51 Aligned_cols=34 Identities=26% Similarity=0.649 Sum_probs=28.0
Q ss_pred ecCCCCccchhhHHHHHhc-CCCcCcccccccccC
Q 043643 20 TAECSHSFHFCCIAANVQH-GNRICPICRCEWKDV 53 (634)
Q Consensus 20 ~~~C~H~Fh~~Ci~~w~~~-~~~~CP~Cr~~~~~~ 53 (634)
+..|+|.||.+|+..|++. +...||.|+..|...
T Consensus 196 C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 196 CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred cCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 4459999999999999864 355899999998654
No 116
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.28 E-value=0.035 Score=45.24 Aligned_cols=43 Identities=19% Similarity=0.462 Sum_probs=32.8
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWK 51 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~ 51 (634)
.|-.||-..+. .+ .-..|.+|..|+...+.. ...||+|..++.
T Consensus 30 nCKsCWf~~k~-----LV-~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLP 72 (99)
T 2ko5_A 30 FCKSCWFENKG-----LV-ECNNHYLCLNCLTLLLSV-SNRCPICKMPLP 72 (99)
T ss_dssp CCCSSCSCCSS-----EE-ECSSCEEEHHHHHHTCSS-SSEETTTTEECC
T ss_pred cChhhccccCC-----ee-eecchhhHHHHHHHHHhh-ccCCcccCCcCC
Confidence 48889988776 44 334699999999987765 447999987653
No 117
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=89.89 E-value=0.31 Score=39.27 Aligned_cols=51 Identities=24% Similarity=0.531 Sum_probs=38.3
Q ss_pred CccccccccccCCcceeE--ecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIF--TAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~--~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.|.||-+.+.....-.+| .-.|+-..|+.|..--.+.++..||.|+.+++.
T Consensus 18 iCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 18 FCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp BCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred ccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 699999987533222234 356888889999987677778899999998764
No 118
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=89.25 E-value=0.19 Score=38.75 Aligned_cols=43 Identities=19% Similarity=0.488 Sum_probs=31.7
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhc---CCCcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQH---GNRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~---~~~~CP~Cr~~ 49 (634)
.|.||.+. +..+....|...||..|+...+.. +.-.||.|.+.
T Consensus 14 ~C~vC~~~-----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 14 RCGVCGDG-----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCTTTSCC-----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CcCCCCCC-----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 58999753 344667889999999999766542 33479999765
No 119
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=87.72 E-value=0.14 Score=42.87 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=23.1
Q ss_pred Ccccccccc-ccCCcceeEecCCCCccchhhHHHH
Q 043643 2 TCPICLGSL-RRGQGVAIFTAECSHSFHFCCIAAN 35 (634)
Q Consensus 2 ~C~ICl~~~-~~~~~~~~~~~~C~H~Fh~~Ci~~w 35 (634)
.|+||.+.+ .. .....+.|+|+||..|+..+
T Consensus 5 ~C~~C~~~~~~~---av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 5 LCQFCDQDPAQD---AVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp BCTTCCSSSCCB---CCEEETTTTEEECHHHHHHH
T ss_pred CCcCCCCCCCCC---ceEECCcCChHHhHHHCHHH
Confidence 599999764 33 11233899999999999984
No 120
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=79.51 E-value=0.68 Score=36.41 Aligned_cols=34 Identities=26% Similarity=0.501 Sum_probs=24.0
Q ss_pred CccccccccccCCcceeEe-cCCCCccchhhHHHHHh
Q 043643 2 TCPICLGSLRRGQGVAIFT-AECSHSFHFCCIAANVQ 37 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~-~~C~H~Fh~~Ci~~w~~ 37 (634)
.|.+|.+.+++ .+-+-. ..=.|.||+.|-....+
T Consensus 17 ~CtlC~erLEd--tHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 17 CCTICHERLED--THFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CCSSSCSCCSS--TTSEECSSCSSCEECHHHHHHHHH
T ss_pred Eeecchhhhcc--CceeeCCCccCCeeeccccHHHHH
Confidence 59999999976 332221 12379999999988775
No 121
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.62 E-value=0.54 Score=38.39 Aligned_cols=52 Identities=19% Similarity=0.361 Sum_probs=36.1
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHH-------hcCCCcCccccccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANV-------QHGNRICPICRCEWKD 52 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~-------~~~~~~CP~Cr~~~~~ 52 (634)
+.|.||...-....+..++.-.|...||..|+..-+ ..+.-.|+.|......
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 369999976433234557778899999999997532 2334479999876543
No 122
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=77.49 E-value=0.25 Score=37.29 Aligned_cols=39 Identities=26% Similarity=0.699 Sum_probs=29.5
Q ss_pred CCccccccccccCCcceeEecC---CCCccchhhHHHHHhcC
Q 043643 1 KTCPICLGSLRRGQGVAIFTAE---CSHSFHFCCIAANVQHG 39 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~---C~H~Fh~~Ci~~w~~~~ 39 (634)
+.||-|.-.+...++..-++-. |++.||..|...|..++
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 4699999998876666555544 88899998888887653
No 123
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=73.63 E-value=0.51 Score=36.12 Aligned_cols=49 Identities=16% Similarity=0.550 Sum_probs=34.7
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHH------hcCCCcCcccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANV------QHGNRICPICRCE 49 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~------~~~~~~CP~Cr~~ 49 (634)
+.|.||........+..++.-.|...||..|+..-+ ..+.-.||.|...
T Consensus 7 ~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 7 GVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 369999987544445667778899999999987521 2334479999654
No 124
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=72.98 E-value=0.54 Score=38.18 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=26.9
Q ss_pred ccccccccccCCcceeEe-cCCCCccchhhHHHH-HhcCCCcCccc
Q 043643 3 CPICLGSLRRGQGVAIFT-AECSHSFHFCCIAAN-VQHGNRICPIC 46 (634)
Q Consensus 3 C~ICl~~~~~~~~~~~~~-~~C~H~Fh~~Ci~~w-~~~~~~~CP~C 46 (634)
||-|-..+....+...++ ..|++.||+.|-..| -+|...+|..-
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~ 73 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDF 73 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHH
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhhcCCCCChHHH
Confidence 665655443222233344 459999999999888 34445567654
No 125
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=72.42 E-value=1.3 Score=33.39 Aligned_cols=44 Identities=27% Similarity=0.841 Sum_probs=30.8
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHh---cCCCcCcccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ---HGNRICPICRCE 49 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~---~~~~~CP~Cr~~ 49 (634)
+.|.||... +..+..-.|...||..|+..-+. .+.-.||.|...
T Consensus 12 ~~C~vC~~~-----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 12 DYCEVCQQG-----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SSCTTTSCC-----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCccCCCC-----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 358889863 34466678999999999976332 234479999753
No 126
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=70.98 E-value=1.1 Score=37.42 Aligned_cols=33 Identities=27% Similarity=0.590 Sum_probs=22.5
Q ss_pred eEecCCCCccchhhHHHHHhcCCCcCcccccccccCCCC
Q 043643 18 IFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVPFQ 56 (634)
Q Consensus 18 ~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~~ 56 (634)
+.+..||+.|. .. ......||.|+..|-+.|..
T Consensus 68 ~~C~~CG~~F~----~~--~~kPsrCP~CkSe~Ie~P~F 100 (105)
T 2gmg_A 68 AQCRKCGFVFK----AE--INIPSRCPKCKSEWIEEPRF 100 (105)
T ss_dssp CBBTTTCCBCC----CC--SSCCSSCSSSCCCCBCCCCE
T ss_pred cChhhCcCeec----cc--CCCCCCCcCCCCCccCCcce
Confidence 44578999992 11 12245799999999887754
No 127
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=70.19 E-value=1.9 Score=30.95 Aligned_cols=45 Identities=27% Similarity=0.730 Sum_probs=30.4
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh---cCCCcCccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ---HGNRICPICRC 48 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~---~~~~~CP~Cr~ 48 (634)
.|.||...-.. +..+....|...||..|+..=+. .+.-.||.|+.
T Consensus 2 ~C~vC~~~~~~--~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED--DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC--SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC--CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58899865322 34466688999999999964222 22336999964
No 128
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=70.13 E-value=1.1 Score=35.21 Aligned_cols=47 Identities=21% Similarity=0.499 Sum_probs=32.2
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh---cCCCcCccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ---HGNRICPICRCEW 50 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~---~~~~~CP~Cr~~~ 50 (634)
.|+||..... .+.-+..-.|...||..|+..-.. .+.-.||.|+...
T Consensus 20 ~C~~C~~~~~--~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 20 ICPGCNKPDD--GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp CBTTTTBCCS--SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCCCCCCCC--CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 4889987642 133456677999999999965332 1345799998754
No 129
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=69.48 E-value=0.93 Score=34.43 Aligned_cols=47 Identities=23% Similarity=0.407 Sum_probs=32.3
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh----cCCCcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ----HGNRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~----~~~~~CP~Cr~~ 49 (634)
.|+||.....++ +.-+-.-.|..-||..|+.--.. .....||.|+.+
T Consensus 8 ~C~~C~~~~~~~-~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 8 QCGACGESYAAD-EFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CCSSSCCCCCSS-SCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCccCCC-CCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 589999877532 33344567999999999865322 235579999764
No 130
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=68.95 E-value=1.1 Score=42.79 Aligned_cols=44 Identities=27% Similarity=0.743 Sum_probs=31.7
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHh---cCCCcCcccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ---HGNRICPICRCE 49 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~---~~~~~CP~Cr~~ 49 (634)
+.|.+|... +..+..-.|...||..|+...+. .+.-.||.|+..
T Consensus 8 ~~C~~C~~~-----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 8 DWCAVCQNG-----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SSBTTTCCC-----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCC-----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 469999743 34567788999999999865442 233479999864
No 131
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=68.81 E-value=1.3 Score=41.34 Aligned_cols=48 Identities=17% Similarity=0.321 Sum_probs=33.4
Q ss_pred CccccccccccCCc--ceeEecCCCCccchhhHHHHH------h----cCCCcCcccccc
Q 043643 2 TCPICLGSLRRGQG--VAIFTAECSHSFHFCCIAANV------Q----HGNRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~--~~~~~~~C~H~Fh~~Ci~~w~------~----~~~~~CP~Cr~~ 49 (634)
.||||...+..++. .-+-...|...||..|+.--. . .....||.|+..
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 59999998876432 234557799999999984311 1 014689999865
No 132
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=66.83 E-value=1.2 Score=34.67 Aligned_cols=49 Identities=22% Similarity=0.580 Sum_probs=33.3
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHH-hcCCCcCcccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANV-QHGNRICPICRCE 49 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~-~~~~~~CP~Cr~~ 49 (634)
+.|.||...-....+..++.-.|.-.||..|+..-. ..+.-.||.|+..
T Consensus 17 ~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 17 AVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 469999876433335556778899999999996421 2334469999653
No 133
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=66.75 E-value=1.3 Score=41.25 Aligned_cols=44 Identities=27% Similarity=0.757 Sum_probs=31.7
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHh---cCCCcCcccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ---HGNRICPICRCE 49 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~---~~~~~CP~Cr~~ 49 (634)
+.|.+|.+. +..+..-.|...||..|+..-+. .+.-.||.|+..
T Consensus 5 ~~C~~C~~~-----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 5 DWCAVCQNG-----GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SSCTTTCCC-----SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CccccCCCC-----CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 469999843 34567788999999999865432 233479999864
No 134
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=64.21 E-value=5.1 Score=35.60 Aligned_cols=43 Identities=28% Similarity=0.578 Sum_probs=29.8
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHh----------cCCCcCccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ----------HGNRICPICRC 48 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~----------~~~~~CP~Cr~ 48 (634)
+.|.+|.+. +..+..-.|...||..||..-+. .+.-.||.|+.
T Consensus 64 d~C~vC~~G-----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 64 EQCRWCAEG-----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CSCSSSCCC-----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CeecccCCC-----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 347777653 33466678999999999996441 23447999964
No 135
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=64.08 E-value=5.8 Score=33.65 Aligned_cols=46 Identities=28% Similarity=0.554 Sum_probs=29.3
Q ss_pred Cccccccccc---cC-CcceeEecCCCCccchhhHHH------HHhcCCCcCcccc
Q 043643 2 TCPICLGSLR---RG-QGVAIFTAECSHSFHFCCIAA------NVQHGNRICPICR 47 (634)
Q Consensus 2 ~C~ICl~~~~---~~-~~~~~~~~~C~H~Fh~~Ci~~------w~~~~~~~CP~Cr 47 (634)
.|.+|+..-. .| .+.-+....|+..||..|+.. .+....-.||.|+
T Consensus 7 ~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 7 ICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp SBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 5888987531 12 234566688999999999952 2233344577664
No 136
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=63.82 E-value=1.2 Score=33.62 Aligned_cols=43 Identities=28% Similarity=0.888 Sum_probs=29.4
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh---cCCCcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ---HGNRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~---~~~~~CP~Cr~~ 49 (634)
.|.||.+. +..+....|...||..|+..-+. .+.-.||.|...
T Consensus 11 ~C~vC~~~-----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 11 FCRVCKDG-----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCTTTCCC-----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCCCC-----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 58899753 23355677999999999975322 223369999754
No 137
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=62.98 E-value=5.2 Score=46.46 Aligned_cols=45 Identities=16% Similarity=0.125 Sum_probs=39.5
Q ss_pred CccccccccccCCcceeEecCCC-CccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECS-HSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~-H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.|||-++.|.+ |++++.| ++|-+.+|.+|+.. ..+||.=|.++..
T Consensus 893 ~cPIs~~lM~D-----PVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 893 LDPLMYTIMKD-----PVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKL 938 (968)
T ss_dssp BCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred CCcchhhHHhC-----CeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCc
Confidence 49999999999 9999998 59999999999987 5589999887654
No 138
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=61.60 E-value=1.6 Score=33.40 Aligned_cols=44 Identities=25% Similarity=0.737 Sum_probs=30.7
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHh---cCCCcCcccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ---HGNRICPICRCE 49 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~---~~~~~CP~Cr~~ 49 (634)
+.|.||.+. +..+....|...||..|+..-+. .+.-.||.|...
T Consensus 9 ~~C~vC~~~-----g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 9 DECAVCRDG-----GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CSBSSSSCC-----SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCccCCCC-----CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 468999864 33466678999999999974222 233369999754
No 139
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=61.59 E-value=2.5 Score=36.10 Aligned_cols=46 Identities=28% Similarity=0.559 Sum_probs=29.9
Q ss_pred CCccccccccc----cC-CcceeEecCCCCccchhhHHHH------HhcCCCcCccc
Q 043643 1 KTCPICLGSLR----RG-QGVAIFTAECSHSFHFCCIAAN------VQHGNRICPIC 46 (634)
Q Consensus 1 ~~C~ICl~~~~----~~-~~~~~~~~~C~H~Fh~~Ci~~w------~~~~~~~CP~C 46 (634)
+.|.||+..-. .| .+..+....|+..||..|+..+ +....-.||.|
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C 58 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC 58 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc
Confidence 57999988642 22 2344666889999999998643 22333356665
No 140
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=61.19 E-value=1.8 Score=40.72 Aligned_cols=44 Identities=23% Similarity=0.651 Sum_probs=30.9
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHh---cCCCcCcccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ---HGNRICPICRCE 49 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~---~~~~~CP~Cr~~ 49 (634)
+.|.+|.+. +.......|...||..|+..-+. .+.-.||.|+..
T Consensus 3 ~~C~~C~~~-----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKP-----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCC-----SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCC-----CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 569999854 33466678999999999964322 234469999764
No 141
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=60.65 E-value=2 Score=34.93 Aligned_cols=49 Identities=22% Similarity=0.580 Sum_probs=32.9
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHH-hcCCCcCcccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANV-QHGNRICPICRCE 49 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~-~~~~~~CP~Cr~~ 49 (634)
+.|.||...-....+..++.-.|.-.||..|+..-. ..+.-.||.|...
T Consensus 26 ~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 26 AVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 369999875422224556668899999999996422 2334479999765
No 142
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=57.07 E-value=7 Score=31.19 Aligned_cols=32 Identities=19% Similarity=0.411 Sum_probs=20.8
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHH
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAAN 35 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w 35 (634)
+.|.||-..-.. ..-+ ..-|+-.||..|+.+-
T Consensus 16 ~~C~VC~~~t~~--~l~p-CRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 16 EMCDVCEVWTAE--SLFP-CRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCTTTCCCCSS--CCSS-CSSSSSCCCHHHHHHH
T ss_pred cccCcccccccc--ceec-cccccccccHhhcccc
Confidence 468888743221 1112 2459999999999985
No 143
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.38 E-value=1.4 Score=32.52 Aligned_cols=43 Identities=30% Similarity=0.813 Sum_probs=28.8
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHh---cCCCcCccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ---HGNRICPICRC 48 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~---~~~~~CP~Cr~ 48 (634)
+.|.||... +..+....|...||..|+..-+. .+.-.||.|..
T Consensus 10 ~~C~vC~~~-----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 10 DFCSVCRKS-----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSCSSSCCS-----SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCccCCCC-----CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 358899864 23466678999999999974222 22335888853
No 144
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.90 E-value=2.6 Score=33.09 Aligned_cols=43 Identities=26% Similarity=0.512 Sum_probs=28.7
Q ss_pred ccccccccCCcceeEecCCCCccchhhHHHHH--------hcCCCcCcccccc
Q 043643 5 ICLGSLRRGQGVAIFTAECSHSFHFCCIAANV--------QHGNRICPICRCE 49 (634)
Q Consensus 5 ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~--------~~~~~~CP~Cr~~ 49 (634)
||...... +.-+-.-.|...||..|+.--. ......||.|+..
T Consensus 20 ~C~~~~~~--~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 20 ICRQPHNN--RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TTCCCCCS--SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred ECCCccCC--CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 78776542 3344556799999999984311 1245689999865
No 145
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=53.91 E-value=1.5 Score=34.95 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=13.6
Q ss_pred CCCCccchhhHHHHHh
Q 043643 22 ECSHSFHFCCIAANVQ 37 (634)
Q Consensus 22 ~C~H~Fh~~Ci~~w~~ 37 (634)
.|+|.||+.|...|..
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 6999999999988743
No 146
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=53.63 E-value=6.8 Score=35.29 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=33.3
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh-cCCCcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ-HGNRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~-~~~~~CP~Cr~~ 49 (634)
.|.+|...|.--.........|.|.+|..|-. |.. ...-.|-+|+..
T Consensus 70 ~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 70 HCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp BCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred cchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 69999998854344556778999999999973 332 222358888754
No 147
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=53.15 E-value=3.5 Score=34.18 Aligned_cols=43 Identities=28% Similarity=0.543 Sum_probs=28.6
Q ss_pred ccccccccccCCcceeEecCCCCccchhhHHHHHh--cCCCcCccccc
Q 043643 3 CPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ--HGNRICPICRC 48 (634)
Q Consensus 3 C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~--~~~~~CP~Cr~ 48 (634)
| ||...... +.-+..-.|...||..|+..-.. .....||.|+.
T Consensus 31 C-iC~~~~~~--~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 31 C-ICGFTHDD--GYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp C-TTSCCSCS--SCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred e-ECCCccCC--CcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 6 77665433 44566688999999999864221 12347999964
No 148
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=52.62 E-value=6.4 Score=31.92 Aligned_cols=44 Identities=23% Similarity=0.651 Sum_probs=30.6
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHh---cCCCcCcccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ---HGNRICPICRCE 49 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~---~~~~~CP~Cr~~ 49 (634)
+.|.+|... +..+....|.-.||..|+..=+. .+.-.||.|...
T Consensus 26 ~~C~vC~~~-----g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 26 TICRVCQKP-----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SCCSSSCSS-----SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CcCcCcCCC-----CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 368889864 33466778999999999965332 233469999753
No 149
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=52.07 E-value=1.8 Score=32.36 Aligned_cols=44 Identities=30% Similarity=0.807 Sum_probs=30.4
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHh---cCCCcCcccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ---HGNRICPICRCE 49 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~---~~~~~CP~Cr~~ 49 (634)
+.|.+|... +..+....|...||..|+..-+. .+.-.||.|...
T Consensus 6 ~~C~vC~~~-----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 6 DFCSVCRKS-----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp SSCTTTCCC-----SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCcCCCCC-----CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 368899864 33466678999999999974222 233469999654
No 150
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=51.44 E-value=4.5 Score=29.20 Aligned_cols=44 Identities=18% Similarity=0.422 Sum_probs=28.1
Q ss_pred ccccccccccCCcceeEec-CCCCccchhhHHHHH---hcCCCcCcccc
Q 043643 3 CPICLGSLRRGQGVAIFTA-ECSHSFHFCCIAANV---QHGNRICPICR 47 (634)
Q Consensus 3 C~ICl~~~~~~~~~~~~~~-~C~H~Fh~~Ci~~w~---~~~~~~CP~Cr 47 (634)
|.+|.....+ +..-+..- .|..-||..|+.--. ......||.|+
T Consensus 5 cc~C~~p~~~-~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKD-KVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCT-TCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred CCCCcCccCC-CCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 6788887743 22334445 688899999985422 12466899985
No 151
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=51.03 E-value=4 Score=34.55 Aligned_cols=45 Identities=22% Similarity=0.591 Sum_probs=28.8
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHh---cCCCcCcccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ---HGNRICPICR 47 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~---~~~~~CP~Cr 47 (634)
+.|.||.+.-.. ...+.-..|+..||..|+..... .+.-.||.|+
T Consensus 8 ~~C~~C~~~g~~--~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 8 ANCAVCDSPGDL--LDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp SCBTTTCCCCCT--TTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCcCCCCCCCC--cCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 468899775211 22356688999999999976543 2233566654
No 152
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=50.93 E-value=11 Score=38.77 Aligned_cols=46 Identities=22% Similarity=0.506 Sum_probs=29.7
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHH--H-HHhcCCCcCcccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIA--A-NVQHGNRICPICRCEWK 51 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~--~-w~~~~~~~CP~Cr~~~~ 51 (634)
.|||-...|.. +.....|.|.-||.... . ..+.+.-.||+|.+.+.
T Consensus 251 ~CPlS~~ri~~----PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 251 QCPISYTRMKY----PSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp BCTTTSSBCSS----EEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred cCCCccccccc----cCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 48887777765 23347799987776432 1 12345568999987653
No 153
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=50.85 E-value=12 Score=32.69 Aligned_cols=42 Identities=29% Similarity=0.590 Sum_probs=28.9
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHH------h----cCCCcCccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANV------Q----HGNRICPICRC 48 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~------~----~~~~~CP~Cr~ 48 (634)
.|.||.+. +..+....|-..||..||...+ . .+.-.|+.|+.
T Consensus 59 ~C~vC~dG-----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 59 QCRWCAEG-----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCTTTCCC-----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred cCeecCCC-----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 46677653 3446667899999999999742 1 23347999954
No 154
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.58 E-value=2.2 Score=35.03 Aligned_cols=46 Identities=22% Similarity=0.637 Sum_probs=31.5
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh---cCCCcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ---HGNRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~---~~~~~CP~Cr~~ 49 (634)
.|.||...-.. ...+..-.|...||..|+..=+. .+.-.||.|...
T Consensus 18 ~C~vC~~~~~~--~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 18 ICQVCSRGDED--DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCSSSCCSGGG--GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCccCCCcCCC--CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 58899876422 34466788999999999963221 223369999764
No 155
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=48.98 E-value=4.2 Score=37.33 Aligned_cols=46 Identities=22% Similarity=0.498 Sum_probs=30.6
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh----cCCCcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ----HGNRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~----~~~~~CP~Cr~~ 49 (634)
.| +|...... .+.-+..-.|...||..|+.--.. .....||.|+..
T Consensus 10 ~C-~C~~~~~~-~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 10 YC-ICKTPEDE-SKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp ET-TTTEECCT-TSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred Ee-eCCCCCCC-CCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 37 89877532 233455677999999999953211 335579999864
No 156
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=48.10 E-value=28 Score=29.09 Aligned_cols=29 Identities=31% Similarity=0.445 Sum_probs=24.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Q 043643 499 IADAQRMAEVGDLESAQALLAERRSGLLS 527 (634)
Q Consensus 499 i~~a~~~a~~g~~~~A~~~L~~~~~~l~~ 527 (634)
.-+|+..++.|++++|..+|.++...+.+
T Consensus 24 ~~eAl~~Ak~g~fe~A~~~l~eA~~~l~~ 52 (105)
T 2e2a_A 24 LLEALKAAENGDFAKADSLVVEAGSCIAE 52 (105)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34677888999999999999999888854
No 157
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=47.61 E-value=14 Score=29.11 Aligned_cols=44 Identities=20% Similarity=0.413 Sum_probs=29.3
Q ss_pred ccccccccCCcceeEecCCCCccchhhHHHHHh----cCCCcCcccccc
Q 043643 5 ICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ----HGNRICPICRCE 49 (634)
Q Consensus 5 ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~----~~~~~CP~Cr~~ 49 (634)
||...... .+.-+-...|..-||..|+.--.. .....||.|+..
T Consensus 16 ~C~~~~d~-~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 16 LCRQPYNV-NHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp TTSCSCCS-SSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred EcCCccCC-CCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 78776532 234455577999999999954221 235579999865
No 158
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=47.27 E-value=8.6 Score=33.82 Aligned_cols=48 Identities=19% Similarity=0.427 Sum_probs=31.9
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh---cCCCcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ---HGNRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~---~~~~~CP~Cr~~ 49 (634)
.|.+|...|.--.........|.|.+|..|-..-.. ...-.|-+|+..
T Consensus 57 ~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 57 RCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp BCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred cccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 699999999422233466788999999999653211 111259999764
No 159
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=47.20 E-value=11 Score=28.59 Aligned_cols=31 Identities=29% Similarity=0.645 Sum_probs=23.2
Q ss_pred CccccccccccCCcceeEec-CCCCccchhhHH
Q 043643 2 TCPICLGSLRRGQGVAIFTA-ECSHSFHFCCIA 33 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~-~C~H~Fh~~Ci~ 33 (634)
.|++|...+..+ ..-+..- .|.--||+.|+.
T Consensus 10 ~C~~C~~p~~~~-~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 10 PCGICTNEVNDD-QDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp BCTTTCSBCCTT-SCEEEBTTTTCCEEEHHHHT
T ss_pred cCccCCCccCCC-CCeEecccCccccCchhccC
Confidence 599999987652 2334455 899999999984
No 160
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=46.35 E-value=5 Score=31.72 Aligned_cols=44 Identities=27% Similarity=0.761 Sum_probs=27.5
Q ss_pred ccccccccccCCcceeEecCCCCccchhhHHHHHh---cCC-CcCccccc
Q 043643 3 CPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ---HGN-RICPICRC 48 (634)
Q Consensus 3 C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~---~~~-~~CP~Cr~ 48 (634)
|.||...-. .+..++.-.|...||..|+..-+. .+. -.||.|+.
T Consensus 29 C~vC~~~~d--~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 29 CHLCGGRQD--PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp BTTTCCCSC--GGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCccCCCCC--CcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 455554422 245566688999999999875332 222 46888874
No 161
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=45.90 E-value=6.5 Score=30.36 Aligned_cols=45 Identities=27% Similarity=0.754 Sum_probs=27.7
Q ss_pred ccccccccccCCcceeEecCCCCccchhhHHHHHh---cC-CCcCcccccc
Q 043643 3 CPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ---HG-NRICPICRCE 49 (634)
Q Consensus 3 C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~---~~-~~~CP~Cr~~ 49 (634)
|.||...-. .+..+.--.|...||..|+..=+. .+ .=.||.|+.+
T Consensus 21 C~~C~~~~~--~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 21 CHLCGGRQD--PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp BTTTCCCSC--GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CcCCCCcCC--CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 456654321 244456678999999999974222 22 3369988753
No 162
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=45.82 E-value=6.3 Score=33.43 Aligned_cols=46 Identities=30% Similarity=0.715 Sum_probs=29.7
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh---cCCCcCccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ---HGNRICPICRC 48 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~---~~~~~CP~Cr~ 48 (634)
.|.||...-.. .+..+....|...||..|+..-+. .+.-.||.|+.
T Consensus 63 ~C~vC~~~~~~-~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKN-ADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCT-TCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCC-ccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 47777754211 234566688999999999864332 22346999975
No 163
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=45.02 E-value=33 Score=28.86 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Q 043643 499 IADAQRMAEVGDLESAQALLAERRSGLLS 527 (634)
Q Consensus 499 i~~a~~~a~~g~~~~A~~~L~~~~~~l~~ 527 (634)
.-+|+..++.|++++|..+|.++...+.+
T Consensus 26 ~~eAl~~Ak~gdfe~A~~~l~eA~~~l~~ 54 (109)
T 3k1s_A 26 AMEALQFAKQGKMAEADEAMVKAKEAINE 54 (109)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34677888899999999999999888854
No 164
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=44.87 E-value=7.6 Score=31.87 Aligned_cols=12 Identities=17% Similarity=0.362 Sum_probs=10.8
Q ss_pred ccchhhHHHHHh
Q 043643 26 SFHFCCIAANVQ 37 (634)
Q Consensus 26 ~Fh~~Ci~~w~~ 37 (634)
-||+.|+.+|..
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999995
No 165
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=44.76 E-value=7.7 Score=31.80 Aligned_cols=12 Identities=25% Similarity=0.409 Sum_probs=10.7
Q ss_pred ccchhhHHHHHh
Q 043643 26 SFHFCCIAANVQ 37 (634)
Q Consensus 26 ~Fh~~Ci~~w~~ 37 (634)
-||+.|++.|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 166
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=44.64 E-value=9.5 Score=31.96 Aligned_cols=47 Identities=21% Similarity=0.468 Sum_probs=32.2
Q ss_pred CccccccccccCCcceeEec-CCCCccchhhHHHHH---------hcCCCcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTA-ECSHSFHFCCIAANV---------QHGNRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~-~C~H~Fh~~Ci~~w~---------~~~~~~CP~Cr~~ 49 (634)
.|+||...+... +..+..- .|...||..|+.--. ......||.|+..
T Consensus 5 ~C~iC~~p~~~~-~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 5 PCGACRSEVNDD-QDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp BCTTTCSBCCTT-SCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCccCCC-CCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 599999997552 3344454 799999999984311 1134479999875
No 167
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=44.62 E-value=33 Score=29.36 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Q 043643 499 IADAQRMAEVGDLESAQALLAERRSGLLS 527 (634)
Q Consensus 499 i~~a~~~a~~g~~~~A~~~L~~~~~~l~~ 527 (634)
.-+|+..++.|++++|..+|.++...+.+
T Consensus 41 ~~eAl~~Ak~gdfe~A~~~l~eA~e~l~~ 69 (120)
T 3l8r_A 41 VHEAFDAMREKNYILAEQKLQEANDELLK 69 (120)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34677888999999999999999888854
No 168
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=43.75 E-value=18 Score=37.24 Aligned_cols=45 Identities=22% Similarity=0.434 Sum_probs=29.5
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHH----hcCCCcCcccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANV----QHGNRICPICRCEWK 51 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~----~~~~~~CP~Cr~~~~ 51 (634)
.|||-...|.. +.....|.|.-||.... |+ +.+.-.||+|.+...
T Consensus 217 ~CPlS~~ri~~----P~Rg~~C~HlqCFDl~s-fL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 217 MCPLGKMRLTI----PCRAVTCTHLQCFDAAL-YLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp BCTTTCSBCSS----EEEETTCCCCCCEEHHH-HHHHHHHSCCCBCTTTCSBCC
T ss_pred eCCCccceecc----CCcCCCCCCCccCCHHH-HHHHHhhCCCeECCCCCcccC
Confidence 48877777755 23347799987765432 22 344558999988754
No 169
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=42.88 E-value=29 Score=28.94 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=24.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Q 043643 499 IADAQRMAEVGDLESAQALLAERRSGLLS 527 (634)
Q Consensus 499 i~~a~~~a~~g~~~~A~~~L~~~~~~l~~ 527 (634)
.-+|+..++.|++++|..+|.++...+.+
T Consensus 22 ~~eAl~~Ak~g~fe~A~~~l~eA~~~l~~ 50 (103)
T 1wcr_A 22 AYAALKQAKQGDFAAAKAMMDQSRMALNE 50 (103)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34677888999999999999999888854
No 170
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=42.88 E-value=5.4 Score=31.49 Aligned_cols=44 Identities=27% Similarity=0.536 Sum_probs=27.8
Q ss_pred ccccccccccCCcceeEec--CCCCccchhhHHHHHh--------cCCCcCcccccc
Q 043643 3 CPICLGSLRRGQGVAIFTA--ECSHSFHFCCIAANVQ--------HGNRICPICRCE 49 (634)
Q Consensus 3 C~ICl~~~~~~~~~~~~~~--~C~H~Fh~~Ci~~w~~--------~~~~~CP~Cr~~ 49 (634)
| ||...... +.-+-.- .|...||..|+.--.. .....||.|+..
T Consensus 19 C-iC~~~~~~--g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 19 C-VCGNSLET--DSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp C-SSCCCCCC--SCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred e-ECCCcCCC--CCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 5 67776322 3334445 7999999999854221 124579999764
No 171
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=39.05 E-value=14 Score=27.54 Aligned_cols=42 Identities=29% Similarity=0.545 Sum_probs=26.6
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPIC 46 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~C 46 (634)
.|--|...|.. ...-....|++.||..|=.- +...-..||-|
T Consensus 17 ~C~~C~~~~~~--~~~y~C~~C~~~FC~dCD~f-iHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKD--QHVYVCAVCQNVFCVDCDVF-VHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTT--SEEECCTTTTCCBCHHHHHT-TTTTSCSSSTT
T ss_pred cccccCcccCC--CccEECCccCcCcccchhHH-HHhhccCCcCC
Confidence 37778888753 11122578999999999643 21123379988
No 172
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.48 E-value=7.8 Score=30.54 Aligned_cols=45 Identities=22% Similarity=0.761 Sum_probs=28.3
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh---cC-CCcCccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ---HG-NRICPICRC 48 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~---~~-~~~CP~Cr~ 48 (634)
.|.||...-. .+..++.-.|...||..|+..=+. .+ .-.||.|..
T Consensus 28 ~C~vC~~~~~--~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHE--PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCC--STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCC--CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3667765321 244566678999999999874222 22 336888864
No 173
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=37.74 E-value=7.6 Score=31.72 Aligned_cols=43 Identities=35% Similarity=0.798 Sum_probs=25.9
Q ss_pred ccccccccccCCcceeEecC--CC-CccchhhHHHHH-hcCCCcCcccccc
Q 043643 3 CPICLGSLRRGQGVAIFTAE--CS-HSFHFCCIAANV-QHGNRICPICRCE 49 (634)
Q Consensus 3 C~ICl~~~~~~~~~~~~~~~--C~-H~Fh~~Ci~~w~-~~~~~~CP~Cr~~ 49 (634)
| ||..... +.-+..-. |. ..||..|+.--. ..+.-.||.|+..
T Consensus 39 C-iC~~~~~---g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 39 C-LCHQVSY---GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp S-TTCCBCC---SCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCC
T ss_pred E-ECCCCCC---CCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCc
Confidence 5 8877542 22333444 55 689999996211 1234579999764
No 174
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.16 E-value=18 Score=27.14 Aligned_cols=39 Identities=21% Similarity=0.509 Sum_probs=27.5
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVP 54 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p 54 (634)
.|+.|...+.. + .+ ..-+..||..|+ .|-.|+.++...+
T Consensus 7 ~C~~C~~~I~~--~--~~-~a~~~~~H~~CF---------~C~~C~~~L~~~~ 45 (70)
T 2d8z_A 7 GCVQCKKPITT--G--GV-TYREQPWHKECF---------VCTACRKQLSGQR 45 (70)
T ss_dssp BCSSSCCBCCS--S--EE-ESSSSEEETTTS---------BCSSSCCBCTTSC
T ss_pred CCcccCCeecc--c--eE-EECccccCCCCC---------ccCCCCCcCCcCc
Confidence 68899998864 2 12 335789999886 5889988765433
No 175
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.05 E-value=18 Score=27.27 Aligned_cols=41 Identities=17% Similarity=0.395 Sum_probs=28.3
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVP 54 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p 54 (634)
.|+.|...+..++ .+...-+..||..|+ .|-.|+.++...+
T Consensus 7 ~C~~C~~~I~~~~---~~~~a~~~~~H~~CF---------~C~~C~~~L~~~~ 47 (72)
T 1wyh_A 7 GCSACGETVMPGS---RKLEYGGQTWHEHCF---------LCSGCEQPLGSRS 47 (72)
T ss_dssp BCSSSCCBCCSSS---CEECSTTCCEETTTC---------BCTTTCCBTTTSC
T ss_pred CCccCCCccccCc---cEEEECccccCcccC---------eECCCCCcCCCCc
Confidence 6889999887421 223345789999886 5888987765433
No 176
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.77 E-value=13 Score=29.69 Aligned_cols=40 Identities=23% Similarity=0.434 Sum_probs=27.7
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCCC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVPF 55 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~ 55 (634)
.|+.|-..+.. . +...-+..||..|+ .|-.|+..+....+
T Consensus 27 ~C~~C~~~I~~---~--~v~a~~~~~H~~CF---------~C~~C~~~L~~~~f 66 (90)
T 2dar_A 27 MCAHCNQVIRG---P--FLVALGKSWHPEEF---------NCAHCKNTMAYIGF 66 (90)
T ss_dssp BBSSSCCBCCS---C--EEEETTEEECTTTC---------BCSSSCCBCSSSCB
T ss_pred CCccCCCEecc---e--EEEECCccccccCC---------ccCCCCCCCCCCEe
Confidence 58889888843 2 22235789999886 69999887765443
No 177
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=33.69 E-value=9.1 Score=29.63 Aligned_cols=43 Identities=35% Similarity=0.811 Sum_probs=25.9
Q ss_pred ccccccccccCCcceeEecC--CC-CccchhhHHHHHh-cCCCcCcccccc
Q 043643 3 CPICLGSLRRGQGVAIFTAE--CS-HSFHFCCIAANVQ-HGNRICPICRCE 49 (634)
Q Consensus 3 C~ICl~~~~~~~~~~~~~~~--C~-H~Fh~~Ci~~w~~-~~~~~CP~Cr~~ 49 (634)
| ||..... +.-+..-. |. ..||..|+.--.. .+.-.||.|+..
T Consensus 19 C-~C~~~~~---g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 19 C-LCHQVSY---GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp S-TTCCCSC---SSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSC
T ss_pred E-ECCCCCC---CCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcc
Confidence 5 7876532 23333445 66 6899999972111 234579999764
No 178
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=32.58 E-value=7.5 Score=29.82 Aligned_cols=43 Identities=23% Similarity=0.535 Sum_probs=27.3
Q ss_pred ccccccccccCCcceeEecCCCCccchhhHHHHHh--cCCCcCccccc
Q 043643 3 CPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ--HGNRICPICRC 48 (634)
Q Consensus 3 C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~--~~~~~CP~Cr~ 48 (634)
| ||...... +.-+-.-.|...||..|+.--.. .....||.|+.
T Consensus 22 C-iC~~~~~~--~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 22 C-FCMKPFAG--RPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp S-TTCCCCTT--CCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred e-ECCCcCCC--CCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 5 78765431 23344567999999999864221 12457999964
No 179
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=32.51 E-value=22 Score=26.39 Aligned_cols=37 Identities=14% Similarity=0.420 Sum_probs=26.7
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.|+.|...+.. .+...-+..||..|+ .|-.|+.++..
T Consensus 7 ~C~~C~~~I~~-----~~~~a~~~~~H~~CF---------~C~~C~~~L~~ 43 (66)
T 1nyp_A 7 ICGACRRPIEG-----RVVNAMGKQWHVEHF---------VCAKCEKPFLG 43 (66)
T ss_dssp EETTTTEECCS-----CEECCTTSBEETTTC---------BCTTTCCBCSS
T ss_pred CCcccCCEecc-----eEEEECccccccCcC---------EECCCCCCCCC
Confidence 58889888863 223345789999886 58899887654
No 180
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.14 E-value=12 Score=29.12 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=27.0
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDV 53 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 53 (634)
.|+-|...+.. . +...-+..||..|+ .|-.|+..+...
T Consensus 17 ~C~~C~~~I~~--~---~~~a~~~~~H~~CF---------~C~~C~~~L~~~ 54 (79)
T 1x62_A 17 MCDKCGTGIVG--V---FVKLRDRHRHPECY---------VCTDCGTNLKQK 54 (79)
T ss_dssp CCSSSCCCCCS--S---CEECSSCEECTTTT---------SCSSSCCCHHHH
T ss_pred ccccCCCCccC--c---EEEECcceeCcCcC---------eeCCCCCCCCCC
Confidence 68899988864 1 22345789999886 588888776543
No 181
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.93 E-value=19 Score=28.68 Aligned_cols=38 Identities=18% Similarity=0.418 Sum_probs=26.7
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDV 53 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 53 (634)
.|.-|...+.. . .+ ..-+..||..|+ .|-.|+..+...
T Consensus 27 ~C~~C~~~I~~---~-~~-~a~~~~~H~~CF---------~C~~C~~~L~~~ 64 (89)
T 1x64_A 27 LCDKCGSGIVG---A-VV-KARDKYRHPECF---------VCADCNLNLKQK 64 (89)
T ss_dssp BCTTTCCBCCS---C-CE-ESSSCEECTTTC---------CCSSSCCCTTTS
T ss_pred CcccCCCEecc---c-EE-EECCceECccCC---------EecCCCCCCCCC
Confidence 58889888764 1 22 336788999886 588898876543
No 182
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=30.38 E-value=13 Score=27.58 Aligned_cols=41 Identities=32% Similarity=0.715 Sum_probs=24.6
Q ss_pred ccccccccCCcceeEecC--CC-CccchhhHHHHH-hcCCCcCccccc
Q 043643 5 ICLGSLRRGQGVAIFTAE--CS-HSFHFCCIAANV-QHGNRICPICRC 48 (634)
Q Consensus 5 ICl~~~~~~~~~~~~~~~--C~-H~Fh~~Ci~~w~-~~~~~~CP~Cr~ 48 (634)
||..... +.-+..-. |. ..||..|+.--. ..+.-.||.|+.
T Consensus 14 ~C~~~~~---g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 14 LCHQVSY---GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp TTTEECC---SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred ECCCcCC---CCEEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccC
Confidence 7876531 33344455 55 689999997211 123457999965
No 183
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.02 E-value=16 Score=27.53 Aligned_cols=40 Identities=23% Similarity=0.526 Sum_probs=27.4
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCCC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVPF 55 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~ 55 (634)
.|..|...+.. . .+ ..-+..||..|+ .|-.|+..+....+
T Consensus 7 ~C~~C~~~I~~--~--~~-~a~~~~~H~~CF---------~C~~C~~~L~~~~f 46 (70)
T 2d8x_A 7 GCHQCGEFIIG--R--VI-KAMNNSWHPECF---------RCDLCQEVLADIGF 46 (70)
T ss_dssp BCSSSCCBCCS--C--CE-EETTEEECTTTS---------BCSSSCCBCSSSCC
T ss_pred cCccCCCEecc--e--EE-EECcccccccCC---------EeCCCCCcCCCCcc
Confidence 58889988863 1 12 234778998886 58899887665443
No 184
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=29.20 E-value=28 Score=30.02 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=21.3
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHH
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIA 33 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~ 33 (634)
.|.+|...|.-. ...--...||+.||..|..
T Consensus 71 ~C~~C~~~Fs~~-~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 71 NCMACGKGFSVT-VRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp BCTTTCCBCCSS-SCCEECTTTCCEECGGGSC
T ss_pred CCcCcCCccccc-cccccCCCCCeEEChHHhC
Confidence 588999888641 1123446799999998864
No 185
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=28.68 E-value=5.9 Score=33.73 Aligned_cols=48 Identities=25% Similarity=0.652 Sum_probs=30.8
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh---cCCCcCcccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ---HGNRICPICRCEWK 51 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~---~~~~~CP~Cr~~~~ 51 (634)
.|.||...-.. +..+....|...||..|+..=+. .+.-.||.|...+.
T Consensus 60 ~C~~C~~~~~~--~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 60 SCILCGTSEND--DQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCTTTTCCTTT--TTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred ccCcccccCCC--CceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 47777764322 44566688999999999874221 22335888876543
No 186
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.63 E-value=20 Score=27.52 Aligned_cols=39 Identities=18% Similarity=0.433 Sum_probs=27.7
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDV 53 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 53 (634)
.|+.|...+..+ ..+. .-+..||..|+ .|..|+..+...
T Consensus 11 ~C~~C~~~I~~~--~~v~--a~~~~~H~~CF---------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 11 KCPKCDKTVYFA--EKVS--SLGKDWHKFCL---------KCERCSKTLTPG 49 (76)
T ss_dssp BCTTTCCBCCTT--TEEE--ETTEEEETTTC---------BCSSSCCBCCTT
T ss_pred CCcCCCCEeECC--eEEE--ECCeEeeCCCC---------CCCCCCCccCCC
Confidence 689999988752 2222 34788999886 599998876543
No 187
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=27.26 E-value=10 Score=28.09 Aligned_cols=41 Identities=29% Similarity=0.693 Sum_probs=25.1
Q ss_pred ccccccccCCcceeEecC--CC-CccchhhHHHHHh-cCCCcCccccc
Q 043643 5 ICLGSLRRGQGVAIFTAE--CS-HSFHFCCIAANVQ-HGNRICPICRC 48 (634)
Q Consensus 5 ICl~~~~~~~~~~~~~~~--C~-H~Fh~~Ci~~w~~-~~~~~CP~Cr~ 48 (634)
||..... +.-+..-. |. ..||..|+.--.. .+.-.||.|+.
T Consensus 13 ~C~~~~~---g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 13 LCHQVSY---GEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp TTTEECC---SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred ECCCCCC---CCeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 7876531 33344455 66 6999999972111 23447999965
No 188
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.07 E-value=31 Score=26.31 Aligned_cols=36 Identities=17% Similarity=0.443 Sum_probs=26.0
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWK 51 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~ 51 (634)
.|+-|-..+.. .+...-+..||..|+ .|-.|+.++.
T Consensus 7 ~C~~C~~~I~~-----~~v~a~~~~wH~~CF---------~C~~C~~~L~ 42 (73)
T 1wig_A 7 GCDSCEKYITG-----RVLEAGEKHYHPSCA---------LCVRCGQMFA 42 (73)
T ss_dssp SCSSSCCCCSS-----CCBCCSSCCBCTTTS---------CCSSSCCCCC
T ss_pred CcccCCCEecC-----eeEEeCCCCCCCCcC---------EeCCCCCCCC
Confidence 58888888764 223346789998886 5888887765
No 189
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=27.03 E-value=1.6e+02 Score=25.82 Aligned_cols=33 Identities=18% Similarity=0.079 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 043643 494 LVAETIADAQRMAEVGDLESAQALLAERRSGLL 526 (634)
Q Consensus 494 ~a~~~i~~a~~~a~~g~~~~A~~~L~~~~~~l~ 526 (634)
.+.+.+..|..+.++|+++++...|..+..+|.
T Consensus 32 gal~~l~~A~~aie~~d~~~k~~~i~KA~~Ii~ 64 (145)
T 1vh6_A 32 GCLKFIRLAAQAIENDDMERKNENLIKAQNIIQ 64 (145)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 466788899999999999988888888877774
No 190
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=26.28 E-value=29 Score=26.54 Aligned_cols=40 Identities=20% Similarity=0.411 Sum_probs=27.4
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVP 54 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p 54 (634)
.|+.|...+.. +.. +.. -+..||..|+ .|..|+..+...+
T Consensus 2 ~C~~C~~~I~~--~~~-v~a-~~~~~H~~CF---------~C~~C~~~L~~~~ 41 (76)
T 1iml_A 2 KCPKCDKEVYF--AER-VTS-LGKDWHRPCL---------KCEKCGKTLTSGG 41 (76)
T ss_dssp BCTTTSSBCCG--GGE-EEE-TTEEEETTTC---------BCTTTCCBCCTTT
T ss_pred cCCCCCCEEEC--ceE-EEE-CCccccCCCC---------CccccCccCCCCc
Confidence 58889988864 222 222 3889998886 5888987765443
No 191
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=26.01 E-value=11 Score=31.66 Aligned_cols=46 Identities=20% Similarity=0.495 Sum_probs=28.4
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh---cCCCcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ---HGNRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~---~~~~~CP~Cr~~ 49 (634)
.|.+|...-.. ...+....|...||..|+..-+. .+.-.||.|..-
T Consensus 56 ~C~~C~~~~~~--~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED--SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC--TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC--CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 35666654322 34466688999999999964222 223468888543
No 192
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=25.95 E-value=2.4e+02 Score=22.07 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHh
Q 043643 492 RLLVAETIADAQRMAEVGDLESAQALLAERRSGLLSSAAAQAGDVLCNWLEAELREIRERM 552 (634)
Q Consensus 492 r~~a~~~i~~a~~~a~~g~~~~A~~~L~~~~~~l~~s~~~~~~d~~~~~L~~eL~e~~~~~ 552 (634)
.-.|.+.+.+|...-..|++.+|..+-..+...|............-..+..-+.+...|.
T Consensus 8 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RA 68 (83)
T 2v6y_A 8 EDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRI 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3467888889988889999999999888777666542221111222334555555555444
No 193
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=25.59 E-value=2.4e+02 Score=22.09 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHh
Q 043643 492 RLLVAETIADAQRMAEVGDLESAQALLAERRSGLLSSAAAQAGDVLCNWLEAELREIRERM 552 (634)
Q Consensus 492 r~~a~~~i~~a~~~a~~g~~~~A~~~L~~~~~~l~~s~~~~~~d~~~~~L~~eL~e~~~~~ 552 (634)
.-.|.+.+.+|...-..|++.+|..+-.++...|............-..|..-+.+...|.
T Consensus 16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~RA 76 (83)
T 2w2u_A 16 EEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRI 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4567788889988889999999999888777666542221111222234545455554443
No 194
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=25.10 E-value=1.2e+02 Score=31.93 Aligned_cols=54 Identities=22% Similarity=0.176 Sum_probs=42.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHhhc
Q 043643 498 TIADAQRMAEVGDLESAQALLAERRSGLLSSAAAQAGDVLCNWLEAELREIRERMAS 554 (634)
Q Consensus 498 ~i~~a~~~a~~g~~~~A~~~L~~~~~~l~~s~~~~~~d~~~~~L~~eL~e~~~~~~~ 554 (634)
-+..|..++|.|..++|.+..+...+.|+.... ...+...|..+|.++..|+..
T Consensus 359 Kl~~A~~Lae~G~~~~A~~Ycdai~~~lk~~~k---~s~~~~~l~~~l~~L~~RL~~ 412 (441)
T 3mzk_B 359 KIYHASLLQEQGLNSLGTKYTDYLSSSVRKLPK---KDILTINLTRELSEVASRLSE 412 (441)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCT---TSHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCC---CCCcCHHHHHHHHHHHHHHhc
Confidence 345678899999999999999999888864321 235677899999999999863
No 195
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.68 E-value=21 Score=26.74 Aligned_cols=38 Identities=21% Similarity=0.535 Sum_probs=26.3
Q ss_pred CCccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
..|+-|...+.. + .+. .-+..||..|+ .|-.|+..+..
T Consensus 6 ~~C~~C~~~I~~--~-~~~--a~~~~~H~~CF---------~C~~C~~~L~~ 43 (69)
T 2cur_A 6 SGCVKCNKAITS--G-GIT--YQDQPWHADCF---------VCVTCSKKLAG 43 (69)
T ss_dssp CCCSSSCCCCCT--T-CEE--ETTEEECTTTT---------BCTTTCCBCTT
T ss_pred CCCcccCCEeCc--c-eEE--ECccccccCcC---------EECCCCCCCCC
Confidence 368899988864 2 222 24778998886 58899887653
No 196
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=23.65 E-value=14 Score=31.84 Aligned_cols=46 Identities=17% Similarity=0.460 Sum_probs=29.7
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCE 49 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~ 49 (634)
.|..|...|.-- ...--...||..||..|....... ...|-.|...
T Consensus 21 ~C~~C~~~Fs~~-~RkHHCR~CG~ifC~~Cs~~~~~~-vRVC~~C~~~ 66 (120)
T 1y02_A 21 SCKSCGAHFANT-ARKQTCLDCKKNFCMTCSSQVGNG-PRLCLLCQRF 66 (120)
T ss_dssp CCTTTCCCCSSG-GGCEECTTTCCEECGGGEEC-----CCEEHHHHHH
T ss_pred cccCcCCccccc-cccccCCCCCCeeCHHHhCCCCCC-ceECHHHHHH
Confidence 588898887531 122345789999999997654432 4578888543
No 197
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.64 E-value=37 Score=26.28 Aligned_cols=40 Identities=18% Similarity=0.386 Sum_probs=26.1
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDV 53 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 53 (634)
.|+.|...+..++ ..+ ..-+..||..|+ .|-.|+..+...
T Consensus 17 ~C~~C~~~I~~~~--~~~-~a~~~~~H~~CF---------~C~~C~~~L~~~ 56 (82)
T 1x63_A 17 KCKGCFKAIVAGD--QNV-EYKGTVWHKDCF---------TCSNCKQVIGTG 56 (82)
T ss_dssp BCSSSCCBCCSSS--CEE-ECSSCEEETTTC---------CCSSSCCCCTTS
T ss_pred cCccCCcccccCc--eEE-EECccccccccC---------chhhCCCccCCC
Confidence 5788888776421 122 234778998886 588888776543
No 198
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.61 E-value=31 Score=26.74 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=26.1
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDV 53 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 53 (634)
.|+-|...+.. .+...-+..||..|+ .|-.|+..+...
T Consensus 17 ~C~~C~~~I~~-----~~v~a~~~~~H~~CF---------~C~~C~~~L~~~ 54 (79)
T 2cor_A 17 ICQKCHAIIDE-----QPLIFKNDPYHPDHF---------NCANCGKELTAD 54 (79)
T ss_dssp BCTTTCCBCCS-----CCCCCSSSCCCTTTS---------BCSSSCCBCCTT
T ss_pred CCccCCCEecc-----eEEEECcceeCCCCC---------EeCCCCCccCCC
Confidence 58888887763 122345778888885 688998876644
No 199
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=23.48 E-value=44 Score=26.94 Aligned_cols=48 Identities=17% Similarity=0.367 Sum_probs=29.4
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh-----cCCCcCccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ-----HGNRICPICRCEW 50 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~-----~~~~~CP~Cr~~~ 50 (634)
.|.+|...|.-. ...--...||+.||..|...+.. .....|-.|-..+
T Consensus 22 ~C~~C~~~F~~~-~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 22 NCMNCQVKFTFT-KRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp BCTTTCCBCCSS-SCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred cCcCCCCcccch-hhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 588998888531 12234567999999999765431 1123566665443
No 200
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.31 E-value=30 Score=26.04 Aligned_cols=41 Identities=22% Similarity=0.448 Sum_probs=27.7
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVP 54 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p 54 (634)
.|+.|...+..++. .+. .-+..||..|+ .|-.|+..+....
T Consensus 7 ~C~~C~~~I~~~~~--~~~-a~~~~~H~~CF---------~C~~C~~~L~~~~ 47 (72)
T 1x4k_A 7 GCQECKKTIMPGTR--KME-YKGSSWHETCF---------ICHRCQQPIGTKS 47 (72)
T ss_dssp CBSSSCCCCCSSSC--EEE-ETTEEEETTTT---------CCSSSCCCCCSSS
T ss_pred CCccCCCcccCCce--EEE-ECcCeecccCC---------cccccCCccCCCc
Confidence 68999998875221 222 24778998886 5888987765443
No 201
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=23.12 E-value=35 Score=32.65 Aligned_cols=30 Identities=17% Similarity=0.239 Sum_probs=17.6
Q ss_pred CccccccccccCCcceeEecCCCCccchhhH
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCI 32 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci 32 (634)
.|.+|...|.-- ...--...||+.||..|-
T Consensus 166 ~C~~C~~~F~~~-~RrhHCR~CG~v~C~~Cs 195 (226)
T 3zyq_A 166 ECHRCRVQFGVM-TRKHHCRACGQIFCGKCS 195 (226)
T ss_dssp BCTTTCCBCBTT-BCCEECTTTCCEECTTTC
T ss_pred CCcCcCCCCCcc-ccccccCCCcCEeChhhc
Confidence 578887777531 112334567777777663
No 202
>3dza_A Uncharacterized putative membrane protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=22.81 E-value=1e+02 Score=28.61 Aligned_cols=35 Identities=20% Similarity=0.068 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Q 043643 493 LLVAETIADAQRMAEVGDLESAQALLAERRSGLLS 527 (634)
Q Consensus 493 ~~a~~~i~~a~~~a~~g~~~~A~~~L~~~~~~l~~ 527 (634)
..+.+.|..||...-+|+.++|..+|.++...|..
T Consensus 33 ~~A~~DI~~AR~aL~~G~~~~Ak~lL~~A~~~L~~ 67 (191)
T 3dza_A 33 ANAMRDIQFARLALFHGQPDSAKKLTDDAAALLAA 67 (191)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 56888899999999999999999999999999954
No 203
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=22.16 E-value=44 Score=27.99 Aligned_cols=42 Identities=24% Similarity=0.759 Sum_probs=26.9
Q ss_pred CCccccccccccCCcceeEec--CCCCccchhhHHHHHh---cCCCcCcccccc
Q 043643 1 KTCPICLGSLRRGQGVAIFTA--ECSHSFHFCCIAANVQ---HGNRICPICRCE 49 (634)
Q Consensus 1 ~~C~ICl~~~~~~~~~~~~~~--~C~H~Fh~~Ci~~w~~---~~~~~CP~Cr~~ 49 (634)
+.|.+|.+. +..+..- .|-..||..|+. +. .+.-.||.|.-.
T Consensus 16 ~~C~~C~~~-----G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~ 62 (107)
T 4gne_A 16 DYCFQCGDG-----GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCD 62 (107)
T ss_dssp SSCTTTCCC-----SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCT
T ss_pred CCCCcCCCC-----CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCC
Confidence 358888732 3334444 588999999996 32 233368877644
No 204
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.13 E-value=24 Score=27.47 Aligned_cols=40 Identities=23% Similarity=0.681 Sum_probs=25.5
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCCC
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVPF 55 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~ 55 (634)
.|+-|...+.. . .+ ..-+..||..|+ .|..|+..+....+
T Consensus 17 ~C~~C~~~I~~---~-~~-~a~~~~~H~~CF---------~C~~C~~~L~~~~f 56 (81)
T 2dlo_A 17 KCATCSQPILD---R-IL-RAMGKAYHPGCF---------TCVVCHRGLDGIPF 56 (81)
T ss_dssp BCTTTCCBCCS---C-CE-EETTEEECTTTC---------BCSSSCCBCTTSCE
T ss_pred ccccCCCeecc---e-eE-EECCccccHHhc---------CcccCCCccCCCee
Confidence 57777777753 1 22 224678888775 58899887654443
No 205
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=21.95 E-value=3.5e+02 Score=22.66 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhhhhh-cchHHHHHHHHHHHHHHHHhh
Q 043643 494 LVAETIADAQRMAEVGDLESAQALLAERRSGLLSSAAAQ-AGDVLCNWLEAELREIRERMA 553 (634)
Q Consensus 494 ~a~~~i~~a~~~a~~g~~~~A~~~L~~~~~~l~~s~~~~-~~d~~~~~L~~eL~e~~~~~~ 553 (634)
.|...+.+|...-..|++++|..+-..+...+....... .....-..|.....+...|.+
T Consensus 17 kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~RAE 77 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAE 77 (117)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH
Confidence 466677788877788999999998888877665432211 122233455555555555543
No 206
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=21.76 E-value=39 Score=25.58 Aligned_cols=28 Identities=21% Similarity=0.473 Sum_probs=21.3
Q ss_pred ccccccccccCCcceeEecCC-CCccchhhHHHHH
Q 043643 3 CPICLGSLRRGQGVAIFTAEC-SHSFHFCCIAANV 36 (634)
Q Consensus 3 C~ICl~~~~~~~~~~~~~~~C-~H~Fh~~Ci~~w~ 36 (634)
|.||.++- . .....| +-.||..|.....
T Consensus 11 C~ICneDA-t-----lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 11 CCICNEDA-T-----LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CTTTCSCC-C-----EEETTTTSEEECSSHHHHHT
T ss_pred eEEeCCCC-e-----EEecCCCCceehHHHHHHHc
Confidence 88999883 2 566788 7789999987643
No 207
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.11 E-value=42 Score=25.21 Aligned_cols=43 Identities=19% Similarity=0.392 Sum_probs=28.7
Q ss_pred Ccccccccccc-CCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccccCCC
Q 043643 2 TCPICLGSLRR-GQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKDVPF 55 (634)
Q Consensus 2 ~C~ICl~~~~~-~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~~p~ 55 (634)
.|+-|-..+.. +.+. .+. .-+..||..|+ .|-.|+..+....+
T Consensus 7 ~C~~C~~~I~~~~~~~-~~~-a~~~~wH~~CF---------~C~~C~~~L~~~~f 50 (72)
T 1x4l_A 7 GCAGCTNPISGLGGTK-YIS-FEERQWHNDCF---------NCKKCSLSLVGRGF 50 (72)
T ss_dssp SBTTTTBCCCCSSSCS-CEE-CSSCEECTTTC---------BCSSSCCBCTTSCC
T ss_pred CCcCCCccccCCCCcc-eEE-ECCcccCcccC---------EeccCCCcCCCCcc
Confidence 68899988863 1112 222 35789999886 69999887654443
No 208
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.04 E-value=37 Score=26.21 Aligned_cols=36 Identities=19% Similarity=0.413 Sum_probs=23.9
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCcccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWK 51 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~ 51 (634)
.|+.|...+.. .+...-+..||..|+ .|-.|+..+.
T Consensus 17 ~C~~C~~~I~~-----~~~~a~~~~~H~~CF---------~C~~C~~~L~ 52 (81)
T 1x6a_A 17 FCHGCSLLMTG-----PFMVAGEFKYHPECF---------ACMSCKVIIE 52 (81)
T ss_dssp BCTTTCCBCCS-----CCBCCTTCCBCTTSC---------BCTTTCCBCC
T ss_pred cCccCCCCcCc-----eEEEECCceeccccC---------CccCCCCccC
Confidence 47777777653 122334778888775 5888988764
No 209
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=21.02 E-value=54 Score=25.16 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=21.0
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHH
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIA 33 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~ 33 (634)
.|.+|...|.-- ...--...||+.||..|..
T Consensus 13 ~C~~C~~~F~~~-~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 13 ACMICSKKFSLL-NRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp BCTTTCCBCBTT-BCCEECTTTCCEECGGGSC
T ss_pred cccCCCCccCCc-cccccCCCCCEEEcccccC
Confidence 588898887541 1123346799999998864
No 210
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=20.86 E-value=12 Score=28.83 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=28.3
Q ss_pred ccccccccccCCcceeEecCCCCccchhhHHHHHh---cCCCcCcccccc
Q 043643 3 CPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ---HGNRICPICRCE 49 (634)
Q Consensus 3 C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~---~~~~~CP~Cr~~ 49 (634)
| ||......+ ..-+-.-.|..-||..|+.--.. .....||.|+..
T Consensus 19 C-~C~~~~~~g-~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 19 C-KCGTKDDDG-ERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp C-TTCCCSCCS-SCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred e-eCCCccCCC-CcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 6 687654331 12344567889999999864321 224579999764
No 211
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=20.76 E-value=31 Score=28.24 Aligned_cols=40 Identities=23% Similarity=0.457 Sum_probs=23.1
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHhcCCCcCccccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQHGNRICPICRCEWKD 52 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 52 (634)
.||+|...+...+ ++.+|..|-..... ...||-|.+++..
T Consensus 34 ~CP~Cq~eL~~~g---------~~~hC~~C~~~f~~--~a~CPdC~q~Lev 73 (101)
T 2jne_A 34 HCPQCQHVLDQDN---------GHARCRSCGEFIEM--KALCPDCHQPLQV 73 (101)
T ss_dssp BCSSSCSBEEEET---------TEEEETTTCCEEEE--EEECTTTCSBCEE
T ss_pred cCccCCCcceecC---------CEEECccccchhhc--cccCcchhhHHHH
Confidence 6999998875411 22234445332222 2369999887654
No 212
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=20.30 E-value=52 Score=26.02 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=21.7
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHH
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAA 34 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~ 34 (634)
.|.+|...|.-- ...--...||+.||..|...
T Consensus 23 ~C~~C~~~Fs~~-~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 23 ACNGCGCVFTTT-VRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp BCTTTCCBCCTT-SCCEECTTTCCEECTGGGCC
T ss_pred CCcCcCCccccc-hhcccccCCCcEEChHHhCC
Confidence 588898888642 11233467999999998654
No 213
>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} SCOP: e.32.1.1
Probab=20.25 E-value=1.2e+02 Score=31.50 Aligned_cols=69 Identities=16% Similarity=0.120 Sum_probs=45.9
Q ss_pred cCCHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHhhch-HHHhhhchhhhhhhhhhhhhhh
Q 043643 508 VGDLESAQALLAERRSGLLSSAAAQAGDVLCNWLEAELREIRERMASM-DLYERTGRAYLLSGLSSHSWQR 577 (634)
Q Consensus 508 ~g~~~~A~~~L~~~~~~l~~s~~~~~~d~~~~~L~~eL~e~~~~~~~~-~~y~~~G~~y~~s~~ssH~~Qr 577 (634)
.+-+.+...+|++++++..+...+-..+.--..|..|++++++++..- ..++-.|+ |++++-.+...|-
T Consensus 26 e~aL~~i~~~Lqr~relavqaangt~s~~dr~ai~~Ei~~l~~ei~~ia~~t~fnG~-~l~~g~~~~~~q~ 95 (398)
T 1io1_A 26 EGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGV-KVLAQDNTLTIQV 95 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBTTB-CTTTSCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhceeCCe-EeecCCCceeEEe
Confidence 456678889999999888765433333445578999999999887643 33555565 6776643344443
No 214
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=20.23 E-value=3.1e+02 Score=24.72 Aligned_cols=55 Identities=25% Similarity=0.204 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhhh---hhhhcchHHHHHHHHHHHHHHHHhh-chHHHhhhchhh
Q 043643 511 LESAQALLAERRSGLLSS---AAAQAGDVLCNWLEAELREIRERMA-SMDLYERTGRAY 565 (634)
Q Consensus 511 ~~~A~~~L~~~~~~l~~s---~~~~~~d~~~~~L~~eL~e~~~~~~-~~~~y~~~G~~y 565 (634)
..+|...|..+...|... ...-..+..+..|..+|.+.+.++. .++.|+..-+.|
T Consensus 75 ~~~ae~~Ls~aL~~L~av~E~YP~LKan~~f~~Lq~eL~~~EnrIa~ARr~YN~aV~~y 133 (171)
T 2etd_A 75 SAQADAELSSALSRLLAIAENYPNLXADANFRQLMDELAGTENRIAVARRDYNEAVXXY 133 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777776655321 1112234667789999999998885 678888876666
No 215
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=20.20 E-value=49 Score=26.56 Aligned_cols=49 Identities=14% Similarity=0.312 Sum_probs=30.7
Q ss_pred CccccccccccCCcceeEecCCCCccchhhHHHHHh------cCCCcCcccccccc
Q 043643 2 TCPICLGSLRRGQGVAIFTAECSHSFHFCCIAANVQ------HGNRICPICRCEWK 51 (634)
Q Consensus 2 ~C~ICl~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~------~~~~~CP~Cr~~~~ 51 (634)
.|.+|...|..- ...--...||+.||..|...... .....|-.|-..+.
T Consensus 11 ~C~~C~~~F~~~-~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 11 RCYGCAVKFTLF-KKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp BCTTTCCBCCSS-SCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred CCcCcCCcccCc-cccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 599999988642 12233467999999999754321 11235777765543
No 216
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=20.09 E-value=7.6 Score=28.68 Aligned_cols=46 Identities=28% Similarity=0.600 Sum_probs=26.5
Q ss_pred CCccccccc-cccCCcceeEecCCCCccchhhHHHHHhcCCC---cCccccc
Q 043643 1 KTCPICLGS-LRRGQGVAIFTAECSHSFHFCCIAANVQHGNR---ICPICRC 48 (634)
Q Consensus 1 ~~C~ICl~~-~~~~~~~~~~~~~C~H~Fh~~Ci~~w~~~~~~---~CP~Cr~ 48 (634)
.+|.||+-. |.+|.++ ...-|.-.||..|-..|.-..+. .|-+||+
T Consensus 10 ~~C~iC~KTKFADG~Gh--~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 10 PTCGICHKTKFADGCGH--NCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp CCCSSSSCSCCCSSCCE--EBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred chhhhhccceeccCCCc--cccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 369999874 4443332 34557777777776554422232 3666654
Done!