BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043644
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 168 bits (425), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/141 (56%), Positives = 97/141 (68%), Gaps = 10/141 (7%)
Query: 79 TTHSSQFLGLNSKSGAWPVSKFGQDFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEI 138
TTH+S FL LN SG WP S GQD I+A +L +G+WPES S+ D GM EI
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVA----------VLDSGIWPESASFQDDGMPEI 50
Query: 139 PSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRLLAKFPNITIAMNSAGDPVGHGTHNSSI 198
P RWKG CK GTQFN+S+CN+KLIGA FN+ +LA P + I MNSA D GHGTH +SI
Sbjct: 51 PKRWKGICKPGTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASI 110
Query: 199 AAGSYVEGASYFGYATGIARG 219
AG++ +G S+FGYA G ARG
Sbjct: 111 TAGNFAKGVSHFGYAPGTARG 131
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 65/117 (55%), Gaps = 9/117 (7%)
Query: 109 QTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFN 168
Q + + +L TG+WPES S+DD G + P +WKG C+T F CN+K+IGA+ ++
Sbjct: 19 QVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFR---CNRKIIGARSYH 75
Query: 169 RRLLAKFPNITIAMNSAGDPVGHGTHNSSIAAGSYVEGASYFGYATGIARGTDGVPL 225
P +N D GHGTH +S AAG V A+ +G G ARG GVPL
Sbjct: 76 ----IGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARG--GVPL 126
>pdb|3PPH|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Threonine Variant
pdb|3PPH|B Chain B, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Threonine Variant
Length = 789
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 75 VKPDTTHSSQFLGLNSKSGAWPVSKFGQDFIIACQTRHHTF--ISMLYTG 122
V+P +HS++F LN+ +G PV +F + + QTR +S LY G
Sbjct: 152 VRPTFSHSTEF-KLNTAAGIKPVDEFNEAKALGVQTRPVILGPVSYLYLG 200
>pdb|3PPF|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Alanine Variant
Without Zinc
pdb|3PPG|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Alanine Variant
With Zinc
Length = 789
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 75 VKPDTTHSSQFLGLNSKSGAWPVSKFGQDFIIACQTRHHTF--ISMLYTG 122
V+P +HS++F LN+ +G PV +F + + QTR +S LY G
Sbjct: 152 VRPTFSHSTEF-KLNTAAGIKPVDEFNEAKALGVQTRPVILGPVSYLYLG 200
>pdb|3PPC|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Tyrosine Variant
With Zinc
pdb|3PPC|B Chain B, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Tyrosine Variant
With Zinc
Length = 789
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 75 VKPDTTHSSQFLGLNSKSGAWPVSKFGQDFIIACQTRHHTF--ISMLYTG 122
V+P +HS++F LN+ +G PV +F + + QTR +S LY G
Sbjct: 152 VRPTFSHSTEF-KLNTAAGIKPVDEFNEAKALGVQTRPVILGPVSYLYLG 200
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 20 EKATLAHHNNYTAHMGLSAMPEAFLGQQRCVSLTPAD 56
E LAH + A M +MP+ FLG++ CV + P D
Sbjct: 446 ENHLLAHPAVHDAAM--VSMPDQFLGERSCVFIIPRD 480
>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
pdb|3H3J|B Chain B, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
Length = 317
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 205 EGASYFGYATGIARGTDGVPLYEDPIV 231
+GA+Y+G A G+AR T+ + ED ++
Sbjct: 229 KGATYYGVAMGLARITEAIFRNEDAVL 255
>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D0O|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D4P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
pdb|3D4P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
Length = 317
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 205 EGASYFGYATGIARGTDGVPLYEDPIV 231
+GA+Y+G A G+AR T+ + ED ++
Sbjct: 229 KGATYYGVAMGLARITEAIFRNEDAVL 255
>pdb|2EVR|A Chain A, Crystal Structure Of A Putative Gamma-D-Glutamyl-L-Diamino
Acid Endopeptidase (Npun_r0659) From Nostoc Punctiforme
Pcc 73102 At 1.60 A Resolution
pdb|2FG0|A Chain A, Crystal Structure Of A Putative Gamma-D-Glutamyl-L-Diamino
Acid Endopeptidase (Npun_r0659) From Nostoc Punctiforme
Pcc 73102 At 1.79 A Resolution
pdb|2FG0|B Chain B, Crystal Structure Of A Putative Gamma-D-Glutamyl-L-Diamino
Acid Endopeptidase (Npun_r0659) From Nostoc Punctiforme
Pcc 73102 At 1.79 A Resolution
Length = 246
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 178 ITIAMNSAGDPVGHGTHNSSIAAGSYVEGASYFGYATGIARGTDGV 223
ITIA AGD V GT + G Y+ Y+ +++G +G DG+
Sbjct: 167 ITIAELVAGDLVFFGTSQKATHVGLYL-ADGYYIHSSGKDQGRDGI 211
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 187 DPVGHGTHNSSIAAGSYVEGASYFGYATGIARG 219
D GHGTH +SIAAG+ GA+ G G+A G
Sbjct: 176 DDNGHGTHVASIAAGT---GAASNGKYKGMAPG 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,503,564
Number of Sequences: 62578
Number of extensions: 296377
Number of successful extensions: 583
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 576
Number of HSP's gapped (non-prelim): 10
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)