Query 043644
Match_columns 231
No_of_seqs 185 out of 1231
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:56:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 99.9 3E-25 6.4E-30 199.5 10.7 142 75-226 1-145 (307)
2 KOG1153 Subtilisin-related pro 99.7 2.5E-17 5.3E-22 153.7 4.0 106 49-203 150-271 (501)
3 cd07478 Peptidases_S8_CspA-lik 99.6 2.1E-15 4.6E-20 143.5 5.9 103 99-225 1-106 (455)
4 cd07497 Peptidases_S8_14 Pepti 99.5 3.6E-15 7.7E-20 135.7 5.1 92 101-225 1-93 (311)
5 cd07475 Peptidases_S8_C5a_Pept 99.4 9.6E-14 2.1E-18 126.3 6.2 106 94-225 2-113 (346)
6 cd07485 Peptidases_S8_Fervidol 99.4 3.3E-13 7.2E-18 119.4 6.8 95 94-226 2-96 (273)
7 cd07479 Peptidases_S8_SKI-1_li 99.4 1.4E-13 3.1E-18 121.4 4.4 59 95-203 1-59 (255)
8 PTZ00262 subtilisin-like prote 99.4 1.8E-13 3.8E-18 134.1 4.4 104 85-225 295-406 (639)
9 cd07489 Peptidases_S8_5 Peptid 99.4 6.8E-13 1.5E-17 119.5 5.3 92 93-225 4-95 (312)
10 cd07480 Peptidases_S8_12 Pepti 99.3 7.6E-13 1.6E-17 118.7 4.5 70 98-225 4-73 (297)
11 cd07483 Peptidases_S8_Subtilis 99.3 2E-12 4.4E-17 116.0 6.0 103 102-225 1-113 (291)
12 cd07476 Peptidases_S8_thiazoli 99.3 1.8E-12 4E-17 115.3 5.6 75 94-225 2-76 (267)
13 cd04842 Peptidases_S8_Kp43_pro 99.3 2.7E-12 5.9E-17 113.7 6.5 84 97-225 2-85 (293)
14 cd04077 Peptidases_S8_PCSK9_Pr 99.3 2.4E-12 5.2E-17 112.4 5.1 61 94-203 17-77 (255)
15 cd04059 Peptidases_S8_Protein_ 99.3 1.4E-12 3E-17 116.0 2.3 83 92-226 29-113 (297)
16 cd07481 Peptidases_S8_Bacillop 99.2 9.6E-12 2.1E-16 109.5 5.2 79 101-225 1-79 (264)
17 cd07473 Peptidases_S8_Subtilis 99.2 2E-11 4.3E-16 106.4 5.7 87 102-225 2-91 (259)
18 cd04843 Peptidases_S8_11 Pepti 99.2 9.9E-12 2.1E-16 111.3 3.7 72 93-225 6-78 (277)
19 cd07493 Peptidases_S8_9 Peptid 99.2 1.3E-11 2.7E-16 108.5 4.1 72 103-225 1-73 (261)
20 cd07487 Peptidases_S8_1 Peptid 99.2 3.5E-11 7.6E-16 104.7 5.6 73 101-225 1-73 (264)
21 cd04848 Peptidases_S8_Autotran 99.2 3.8E-11 8.2E-16 103.8 5.6 73 100-225 1-73 (267)
22 cd07490 Peptidases_S8_6 Peptid 99.1 3.8E-11 8.2E-16 104.4 5.0 70 103-225 1-70 (254)
23 cd07484 Peptidases_S8_Thermita 99.1 4.6E-11 9.9E-16 104.5 5.3 78 92-225 19-96 (260)
24 cd07474 Peptidases_S8_subtilis 99.1 6.5E-11 1.4E-15 105.1 6.0 86 101-225 1-90 (295)
25 cd07491 Peptidases_S8_7 Peptid 99.1 5.2E-11 1.1E-15 104.9 3.8 71 101-213 2-72 (247)
26 cd05561 Peptidases_S8_4 Peptid 99.1 6.4E-11 1.4E-15 103.5 4.0 21 184-204 31-51 (239)
27 cd05562 Peptidases_S53_like Pe 99.1 1E-10 2.2E-15 104.6 4.9 67 99-210 2-68 (275)
28 cd07482 Peptidases_S8_Lantibio 99.1 8.1E-11 1.8E-15 104.1 3.9 21 183-203 47-67 (294)
29 cd07496 Peptidases_S8_13 Pepti 99.0 1.7E-10 3.6E-15 102.7 4.8 35 183-225 65-99 (285)
30 cd07492 Peptidases_S8_8 Peptid 99.0 2.7E-10 5.9E-15 97.5 4.4 66 103-212 1-66 (222)
31 cd07494 Peptidases_S8_10 Pepti 99.0 2.8E-10 6E-15 102.9 3.9 31 92-133 11-41 (298)
32 cd07477 Peptidases_S8_Subtilis 99.0 3.8E-10 8.3E-15 96.4 3.8 67 103-225 1-67 (229)
33 cd07498 Peptidases_S8_15 Pepti 98.9 8.1E-10 1.8E-14 95.5 4.2 34 184-225 35-68 (242)
34 cd04847 Peptidases_S8_Subtilis 98.9 1.2E-09 2.7E-14 97.4 3.0 20 185-204 34-53 (291)
35 PF00082 Peptidase_S8: Subtila 98.8 2.3E-09 4.9E-14 93.9 4.1 71 118-225 4-75 (282)
36 cd04857 Peptidases_S8_Tripepti 98.4 4E-07 8.6E-12 86.2 6.6 23 99-131 20-42 (412)
37 cd00306 Peptidases_S8_S53 Pept 98.4 5E-07 1.1E-11 75.7 5.4 22 184-205 39-60 (241)
38 KOG4266 Subtilisin kexin isozy 98.4 1.6E-07 3.4E-12 91.7 2.3 100 54-203 111-252 (1033)
39 PF05922 Inhibitor_I9: Peptida 98.4 3.3E-07 7.2E-12 66.4 3.2 30 49-78 53-82 (82)
40 COG1404 AprE Subtilisin-like s 98.1 1.6E-06 3.4E-11 79.9 3.7 64 93-203 131-197 (508)
41 KOG3526 Subtilisin-like propro 98.0 1.1E-05 2.5E-10 75.2 6.8 86 93-222 152-239 (629)
42 cd07488 Peptidases_S8_2 Peptid 96.8 0.00047 1E-08 61.0 0.8 20 184-203 32-51 (247)
43 KOG1114 Tripeptidyl peptidase 93.4 0.038 8.2E-07 57.2 1.5 28 187-214 308-335 (1304)
44 KOG1114 Tripeptidyl peptidase 65.7 4.1 8.9E-05 42.9 2.2 23 99-131 78-100 (1304)
45 KOG3525 Subtilisin-like propro 65.2 10 0.00022 36.5 4.6 71 93-203 24-94 (431)
46 PF08194 DIM: DIM protein; In 30.6 39 0.00084 21.4 1.7 14 1-14 1-14 (36)
47 KOG0074 GTP-binding ADP-ribosy 20.8 73 0.0016 26.7 2.0 44 65-121 52-95 (185)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.92 E-value=3e-25 Score=199.52 Aligned_cols=142 Identities=40% Similarity=0.583 Sum_probs=120.7
Q ss_pred cccccCCCCcccCCCCCCC--CCcCCCCCCceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCccccccccccc
Q 043644 75 VKPDTTHSSQFLGLNSKSG--AWPVSKFGQDFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQF 152 (231)
Q Consensus 75 ~~l~tt~s~~~~gl~~~~~--~w~~~~~G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f 152 (231)
++|++++++.|+|+..... .|....+|+||+|| |||||||++||+|.++...+++..|.+.|..+..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~Va----------ViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~ 70 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIG----------VLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDF 70 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEE----------EEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCc
Confidence 4688999999999975443 36678999999999 99999999999999988888999999999998888
Q ss_pred CCcCCCceeeeeeeehhhhhhcCC-CCcCCCCCCCCCCCCchhhhhhhcCCCCCCCceeeecCceeccccCCCcc
Q 043644 153 NSSLCNKKLIGAQIFNRRLLAKFP-NITIAMNSAGDPVGHGTHNSSIAAGSYVEGASYFGYATGIARGTDGVPLY 226 (231)
Q Consensus 153 ~~~~cn~kliGa~~f~~~~~~~~g-~~~~~~~s~~D~~GHGTHvAgtaAG~~v~~a~~~G~~~g~a~G~ap~~~~ 226 (231)
+...||+|++|+++|.+++....+ ..+.+..++.|..||||||||||||+...+..+.|...+.++|+||.++.
T Consensus 71 ~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l 145 (307)
T cd04852 71 NPFSCNNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARI 145 (307)
T ss_pred CccCcCCeEEEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeE
Confidence 777899999999999876533221 12334568899999999999999999998888888888999999999863
No 2
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.5e-17 Score=153.71 Aligned_cols=106 Identities=24% Similarity=0.305 Sum_probs=81.7
Q ss_pred eeeeCHHHHHHHhcCCCeeEEecCccccccc-----CCCCcccCCCCCCC-------CCc----CCCCCCceEEEEecCc
Q 043644 49 CVSLTPADLESLKSSPGYISSLEDLPVKPDT-----THSSQFLGLNSKSG-------AWP----VSKFGQDFIIACQTRH 112 (231)
Q Consensus 49 aa~lt~~~~~~L~~~p~V~~Vepd~~~~l~t-----t~s~~~~gl~~~~~-------~w~----~~~~G~gv~Vg~~~~~ 112 (231)
...++++-+..++++|-+..+|++..++... .|...+|||.+.+. .|. .-..|+||..+
T Consensus 150 ~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaY----- 224 (501)
T KOG1153|consen 150 TGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAY----- 224 (501)
T ss_pred ccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEE-----
Confidence 6778888899999999999999999887653 56667889876422 232 23479999999
Q ss_pred ceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhhhhcCCCCcCCCCCCCCCCCCc
Q 043644 113 HTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRLLAKFPNITIAMNSAGDPVGHG 192 (231)
Q Consensus 113 ~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~~~~~g~~~~~~~s~~D~~GHG 192 (231)
|+||||+.+||||.++. .| |.|.. . .....|++|||
T Consensus 225 -----v~DTGVni~H~dFegRa------~w-Ga~i~-------------------~-------------~~~~~D~nGHG 260 (501)
T KOG1153|consen 225 -----VLDTGVNIEHPDFEGRA------IW-GATIP-------------------P-------------KDGDEDCNGHG 260 (501)
T ss_pred -----Eecccccccccccccce------ec-ccccC-------------------C-------------CCcccccCCCc
Confidence 99999999999999884 34 11210 0 12467999999
Q ss_pred hhhhhhhcCCC
Q 043644 193 THNSSIAAGSY 203 (231)
Q Consensus 193 THvAgtaAG~~ 203 (231)
|||||+++|++
T Consensus 261 TH~AG~I~sKt 271 (501)
T KOG1153|consen 261 THVAGLIGSKT 271 (501)
T ss_pred ceeeeeeeccc
Confidence 99999999997
No 3
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=99.57 E-value=2.1e-15 Score=143.54 Aligned_cols=103 Identities=18% Similarity=0.271 Sum_probs=69.8
Q ss_pred CCCCceEEEEecCcceeeEEeeceeccCccccCC-CCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhhhhc--C
Q 043644 99 KFGQDFIIACQTRHHTFISMLYTGVWPESESYDD-SGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRLLAK--F 175 (231)
Q Consensus 99 ~~G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~-~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~~~~--~ 175 (231)
.+|+||+|| |||||||+.||+|++ .+.+++...|++....+. ......+..++.+..+.. .
T Consensus 1 ltG~GV~Va----------VIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~------~~~~~~~~~~~~~~~i~~~~~ 64 (455)
T cd07478 1 LTGKGVLVG----------IIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGP------PPGGYYGGGEYTEEIINAALA 64 (455)
T ss_pred CCCCceEEE----------EEECCCCCCCHHHccCCCCchhHHhhhCcCCCCC------CCccccCceEEeHHHHHHHHh
Confidence 379999999 999999999999985 466788889987665432 122233333333321111 1
Q ss_pred CCCcCCCCCCCCCCCCchhhhhhhcCCCCCCCceeeecCceeccccCCCc
Q 043644 176 PNITIAMNSAGDPVGHGTHNSSIAAGSYVEGASYFGYATGIARGTDGVPL 225 (231)
Q Consensus 176 g~~~~~~~s~~D~~GHGTHvAgtaAG~~v~~a~~~G~~~g~a~G~ap~~~ 225 (231)
...+.+....+|.+||||||||||||+... .....||||.+.
T Consensus 65 ~~~p~~~~~~~D~~GHGThvAGIiag~~~~--------~~~~~GvAp~a~ 106 (455)
T cd07478 65 SDNPYDIVPSRDENGHGTHVAGIAAGNGDN--------NPDFKGVAPEAE 106 (455)
T ss_pred cCCccccCcCCCCCCchHHHHHHHhcCCCC--------CCCccccCCCCc
Confidence 123334456789999999999999999643 244567777764
No 4
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.55 E-value=3.6e-15 Score=135.69 Aligned_cols=92 Identities=26% Similarity=0.247 Sum_probs=55.7
Q ss_pred CCceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhhhhcCCCCcC
Q 043644 101 GQDFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRLLAKFPNITI 180 (231)
Q Consensus 101 G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~~~~~g~~~~ 180 (231)
|+||+|| |||||||.+||||.++... .|.- .|+ +..+++ .+++... .
T Consensus 1 G~gV~Va----------ViDTGid~~HPdl~~~~~~----~~~~------~~d---~~~~~~------~g~d~~~----~ 47 (311)
T cd07497 1 GEGVVIA----------IVDTGVDYSHPDLDIYGNF----SWKL------KFD---YKAYLL------PGMDKWG----G 47 (311)
T ss_pred CCCeEEE----------EEeCCcCCCChhHhcccCC----Cccc------ccC---cCCCcc------CCcCCCC----C
Confidence 7999999 9999999999999764210 0100 110 001111 1111000 0
Q ss_pred CCCCCCCCCCCchhhhhhhcCCCCCCCceeeec-CceeccccCCCc
Q 043644 181 AMNSAGDPVGHGTHNSSIAAGSYVEGASYFGYA-TGIARGTDGVPL 225 (231)
Q Consensus 181 ~~~s~~D~~GHGTHvAgtaAG~~v~~a~~~G~~-~g~a~G~ap~~~ 225 (231)
....+.|.+||||||||||||+...+.+.+|+. .....||||.|+
T Consensus 48 ~~~~~~D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~ 93 (311)
T cd07497 48 FYVIMYDFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAK 93 (311)
T ss_pred ccCCCCCccccchhHHHHHhccCcccccccccccccceeeeCCCCE
Confidence 113578999999999999999875444433332 245688888775
No 5
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=99.45 E-value=9.6e-14 Score=126.27 Aligned_cols=106 Identities=19% Similarity=0.215 Sum_probs=68.4
Q ss_pred CCcCCC-CCCceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCC-----CcccccccccccCCcCCCceeeeeeee
Q 043644 94 AWPVSK-FGQDFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPS-----RWKGECKTGTQFNSSLCNKKLIGAQIF 167 (231)
Q Consensus 94 ~w~~~~-~G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~-----~w~g~c~~g~~f~~~~cn~kliGa~~f 167 (231)
+|.... +|+||+|+ ||||||+++||+|.+....+... .+...+..+. ...++.|++..+.|
T Consensus 2 ~w~~~~~~G~gv~Va----------ViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 68 (346)
T cd07475 2 LWDKGGYKGEGMVVA----------VIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGY---GKYYNEKVPFAYNY 68 (346)
T ss_pred hhhhcCCCCCCcEEE----------EEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCC---CcccccCCCeeEcC
Confidence 577776 89999999 99999999999998764322100 1112222111 12356677777766
Q ss_pred hhhhhhcCCCCcCCCCCCCCCCCCchhhhhhhcCCCCCCCceeeecCceeccccCCCc
Q 043644 168 NRRLLAKFPNITIAMNSAGDPVGHGTHNSSIAAGSYVEGASYFGYATGIARGTDGVPL 225 (231)
Q Consensus 168 ~~~~~~~~g~~~~~~~s~~D~~GHGTHvAgtaAG~~v~~a~~~G~~~g~a~G~ap~~~ 225 (231)
.+... +.....|..+|||||||+|+|+..... ......|+||.+.
T Consensus 69 ~~~~~--------~~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~ 113 (346)
T cd07475 69 ADNND--------DILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQ 113 (346)
T ss_pred CCCCC--------ccCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCe
Confidence 54321 111256899999999999999875421 2345677777764
No 6
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=99.41 E-value=3.3e-13 Score=119.37 Aligned_cols=95 Identities=23% Similarity=0.236 Sum_probs=59.9
Q ss_pred CCcCCCCCCceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhhhh
Q 043644 94 AWPVSKFGQDFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRLLA 173 (231)
Q Consensus 94 ~w~~~~~G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~~~ 173 (231)
+|..+.+|+||+|+ |||||||++||+|.+..... .++ .+ ++. +.+...
T Consensus 2 aw~~g~~G~gv~Ia----------viDtGid~~Hp~~~~~~~~~---~~~-~~----------~~~-----~~~~~~--- 49 (273)
T cd07485 2 AWEFGTGGPGIIVA----------VVDTGVDGTHPDLQGNGDGD---GYD-PA----------VNG-----YNFVPN--- 49 (273)
T ss_pred ccccccCCCCcEEE----------EEeCCCCCCChhhccCCCCC---Ccc-cc----------cCC-----cccccc---
Confidence 68888899999999 99999999999998762110 000 00 000 000000
Q ss_pred cCCCCcCCCCCCCCCCCCchhhhhhhcCCCCCCCceeeecCceeccccCCCcc
Q 043644 174 KFPNITIAMNSAGDPVGHGTHNSSIAAGSYVEGASYFGYATGIARGTDGVPLY 226 (231)
Q Consensus 174 ~~g~~~~~~~s~~D~~GHGTHvAgtaAG~~v~~a~~~G~~~g~a~G~ap~~~~ 226 (231)
.........|..||||||||+++|+......+-|. ..+.|+||.+..
T Consensus 50 ----~~~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i--~~~~gvap~a~l 96 (273)
T cd07485 50 ----VGDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGI--AGAGGVAPGVKI 96 (273)
T ss_pred ----cCCcCCCCCCCCCCHHHHHHHHHcccCCCcceecc--ccccccCCCCEE
Confidence 00112356788999999999999986432222222 256789998864
No 7
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=99.41 E-value=1.4e-13 Score=121.37 Aligned_cols=59 Identities=22% Similarity=0.414 Sum_probs=45.2
Q ss_pred CcCCCCCCceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhhhhc
Q 043644 95 WPVSKFGQDFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRLLAK 174 (231)
Q Consensus 95 w~~~~~G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~~~~ 174 (231)
|..+.+|+||+|| ||||||+.+||+|.+.- ...+ |.+
T Consensus 1 W~~g~tG~gv~Va----------viDsGv~~~hp~l~~~~-------------~~~~---------------~~~----- 37 (255)
T cd07479 1 WQLGYTGAGVKVA----------VFDTGLAKDHPHFRNVK-------------ERTN---------------WTN----- 37 (255)
T ss_pred CCCCCCCCCCEEE----------EEeCCCCCCCcchhccc-------------cccc---------------cCC-----
Confidence 7788899999999 99999999999997421 0001 111
Q ss_pred CCCCcCCCCCCCCCCCCchhhhhhhcCCC
Q 043644 175 FPNITIAMNSAGDPVGHGTHNSSIAAGSY 203 (231)
Q Consensus 175 ~g~~~~~~~s~~D~~GHGTHvAgtaAG~~ 203 (231)
.....|..||||||||||+|+.
T Consensus 38 -------~~~~~d~~gHGT~VAGiIa~~~ 59 (255)
T cd07479 38 -------EKTLDDGLGHGTFVAGVIASSR 59 (255)
T ss_pred -------CCCCCCCCCcHHHHHHHHHccC
Confidence 1246788999999999999974
No 8
>PTZ00262 subtilisin-like protease; Provisional
Probab=99.39 E-value=1.8e-13 Score=134.13 Aligned_cols=104 Identities=18% Similarity=0.042 Sum_probs=59.6
Q ss_pred ccCCCC--CCCCCcC--CCCCCceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCce
Q 043644 85 FLGLNS--KSGAWPV--SKFGQDFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKK 160 (231)
Q Consensus 85 ~~gl~~--~~~~w~~--~~~G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~k 160 (231)
.|+|+. .+..|.. ...|+||+|| |||||||++||||.++-... +.... |.++.. .+|+.
T Consensus 295 qWgLd~i~~~~aw~~~~~~~g~gV~VA----------VIDTGID~~HPDL~~ni~~n-~~el~-----GrdgiD-dD~nG 357 (639)
T PTZ00262 295 QWGLDLTRLDETQELIEPHEVNDTNIC----------VIDSGIDYNHPDLHDNIDVN-VKELH-----GRKGID-DDNNG 357 (639)
T ss_pred CcCcchhCchHHHHHhhccCCCCcEEE----------EEccCCCCCChhhhhhcccc-ccccc-----Cccccc-cccCC
Confidence 356653 2345542 3578999999 99999999999998652100 00000 101100 01111
Q ss_pred ----eeeeeeehhhhhhcCCCCcCCCCCCCCCCCCchhhhhhhcCCCCCCCceeeecCceeccccCCCc
Q 043644 161 ----LIGAQIFNRRLLAKFPNITIAMNSAGDPVGHGTHNSSIAAGSYVEGASYFGYATGIARGTDGVPL 225 (231)
Q Consensus 161 ----liGa~~f~~~~~~~~g~~~~~~~s~~D~~GHGTHvAgtaAG~~v~~a~~~G~~~g~a~G~ap~~~ 225 (231)
+.| +.|.+ ....|.|.+||||||||||||....+ ....||||.+.
T Consensus 358 ~vdd~~G-~nfVd-----------~~~~P~D~~GHGTHVAGIIAA~gnN~--------~Gi~GVAP~Ak 406 (639)
T PTZ00262 358 NVDDEYG-ANFVN-----------NDGGPMDDNYHGTHVSGIISAIGNNN--------IGIVGVDKRSK 406 (639)
T ss_pred ccccccc-ccccC-----------CCCCCCCCCCcchHHHHHHhccccCC--------Cceeeeecccc
Confidence 111 11211 12467899999999999999975332 22457777765
No 9
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.35 E-value=6.8e-13 Score=119.48 Aligned_cols=92 Identities=18% Similarity=0.059 Sum_probs=58.8
Q ss_pred CCCcCCCCCCceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhhh
Q 043644 93 GAWPVSKFGQDFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRLL 172 (231)
Q Consensus 93 ~~w~~~~~G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~~ 172 (231)
.+|..+.+|+||+|| ||||||+++||+|.++-... .++.+.+.|.....
T Consensus 4 ~~~~~g~tG~gv~Va----------ViDsGid~~hp~l~~~~~~~---------------------~~~~~~~d~~~~~~ 52 (312)
T cd07489 4 KLHAEGITGKGVKVA----------VVDTGIDYTHPALGGCFGPG---------------------CKVAGGYDFVGDDY 52 (312)
T ss_pred hHHhCCCCCCCCEEE----------EEECCCCCCChhhhcCCCCC---------------------ceeccccccCCccc
Confidence 578888999999999 99999999999998642110 01111111211100
Q ss_pred hcCCCCcCCCCCCCCCCCCchhhhhhhcCCCCCCCceeeecCceeccccCCCc
Q 043644 173 AKFPNITIAMNSAGDPVGHGTHNSSIAAGSYVEGASYFGYATGIARGTDGVPL 225 (231)
Q Consensus 173 ~~~g~~~~~~~s~~D~~GHGTHvAgtaAG~~v~~a~~~G~~~g~a~G~ap~~~ 225 (231)
. ..+.+.+...+.|.+||||||||+++|+... ....|+||.+.
T Consensus 53 ~-~~~~~~~~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~ 95 (312)
T cd07489 53 D-GTNPPVPDDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEAT 95 (312)
T ss_pred c-cccCCCCCCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCE
Confidence 0 0011223356788899999999999998743 23457777764
No 10
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.34 E-value=7.6e-13 Score=118.66 Aligned_cols=70 Identities=23% Similarity=0.261 Sum_probs=51.4
Q ss_pred CCCCCceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhhhhcCCC
Q 043644 98 SKFGQDFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRLLAKFPN 177 (231)
Q Consensus 98 ~~~G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~~~~~g~ 177 (231)
.++|+||+|| ||||||+.+||+|.++... . +.|.++
T Consensus 4 ~~tG~gv~Va----------VlDsGv~~~hp~l~~~~~~------------~---------------~~~~~~------- 39 (297)
T cd07480 4 PFTGAGVRVA----------VLDTGIDLTHPAFAGRDIT------------T---------------KSFVGG------- 39 (297)
T ss_pred CCCCCCCEEE----------EEcCCCCCCChhhcCCccc------------C---------------cccCCC-------
Confidence 4689999999 9999999999999865210 0 112111
Q ss_pred CcCCCCCCCCCCCCchhhhhhhcCCCCCCCceeeecCceeccccCCCc
Q 043644 178 ITIAMNSAGDPVGHGTHNSSIAAGSYVEGASYFGYATGIARGTDGVPL 225 (231)
Q Consensus 178 ~~~~~~s~~D~~GHGTHvAgtaAG~~v~~a~~~G~~~g~a~G~ap~~~ 225 (231)
..+.|.+||||||||+|+|+... +...|+||.+.
T Consensus 40 -----~~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~ 73 (297)
T cd07480 40 -----EDVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAE 73 (297)
T ss_pred -----CCCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCE
Confidence 23678999999999999998654 33358888775
No 11
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=99.32 E-value=2e-12 Score=116.03 Aligned_cols=103 Identities=22% Similarity=0.303 Sum_probs=54.7
Q ss_pred CceEEEEecCcceeeEEeeceeccCccccCCCCC---CCCCC-----Ccccccc--cccccCCcCCCceeeeeeeehhhh
Q 043644 102 QDFIIACQTRHHTFISMLYTGVWPESESYDDSGM---NEIPS-----RWKGECK--TGTQFNSSLCNKKLIGAQIFNRRL 171 (231)
Q Consensus 102 ~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~---~~~p~-----~w~g~c~--~g~~f~~~~cn~kliGa~~f~~~~ 171 (231)
++|+|+ |||||||++||||++.-. .++|. ..+|... .|.+|....+.+++++...+...
T Consensus 1 ~~V~Va----------viDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~- 69 (291)
T cd07483 1 KTVIVA----------VLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLT- 69 (291)
T ss_pred CceEEE----------EEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccc-
Confidence 579999 999999999999987521 11110 0111110 12233222223333332221110
Q ss_pred hhcCCCCcCCCCCCCCCCCCchhhhhhhcCCCCCCCceeeecCceeccccCCCc
Q 043644 172 LAKFPNITIAMNSAGDPVGHGTHNSSIAAGSYVEGASYFGYATGIARGTDGVPL 225 (231)
Q Consensus 172 ~~~~g~~~~~~~s~~D~~GHGTHvAgtaAG~~v~~a~~~G~~~g~a~G~ap~~~ 225 (231)
....+ +.+...|.|.+||||||||||++....+. | ..|+||.++
T Consensus 70 ~~~~g--~~~~~~~~~~~gHGT~VAGiIaa~~~n~~-------g-~~GvAp~a~ 113 (291)
T cd07483 70 EKGYG--NNDVNGPISDADHGTHVAGIIAAVRDNGI-------G-IDGVADNVK 113 (291)
T ss_pred ccccc--ccccCCCCCCCCcHHHHHHHHhCcCCCCC-------c-eEEECCCCE
Confidence 00011 11234566899999999999999864322 1 456666654
No 12
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=99.31 E-value=1.8e-12 Score=115.32 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=53.9
Q ss_pred CCcCCCCCCceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhhhh
Q 043644 94 AWPVSKFGQDFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRLLA 173 (231)
Q Consensus 94 ~w~~~~~G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~~~ 173 (231)
+|..+.+|+||+|| |||+|||.+||+|++..+.+.. .+..
T Consensus 2 lw~~g~~g~gV~Va----------ViDsGid~~hp~l~~~~~~~~~--------------------------~~~~---- 41 (267)
T cd07476 2 LFAFGGGDPRITIA----------ILDGPVDRTHPCFRGANLTPLF--------------------------TYAA---- 41 (267)
T ss_pred ceeccCCCCCeEEE----------EeCCCcCCCChhhCCCcccccc--------------------------Cccc----
Confidence 68888899999999 9999999999999875221100 0000
Q ss_pred cCCCCcCCCCCCCCCCCCchhhhhhhcCCCCCCCceeeecCceeccccCCCc
Q 043644 174 KFPNITIAMNSAGDPVGHGTHNSSIAAGSYVEGASYFGYATGIARGTDGVPL 225 (231)
Q Consensus 174 ~~g~~~~~~~s~~D~~GHGTHvAgtaAG~~v~~a~~~G~~~g~a~G~ap~~~ 225 (231)
......|.+||||||||+++|+... ...||||.+.
T Consensus 42 -------~~~~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~ 76 (267)
T cd07476 42 -------AACQDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCR 76 (267)
T ss_pred -------cCCCCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCe
Confidence 0124568899999999999997521 2467777765
No 13
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=99.31 E-value=2.7e-12 Score=113.66 Aligned_cols=84 Identities=21% Similarity=0.325 Sum_probs=55.9
Q ss_pred CCCCCCceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhhhhcCC
Q 043644 97 VSKFGQDFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRLLAKFP 176 (231)
Q Consensus 97 ~~~~G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~~~~~g 176 (231)
.+.+|+||+|| ||||||+++||+|.+... ....| .++++.....+.
T Consensus 2 ~g~tG~gv~Va----------viDtGi~~~hp~l~~~~~------------~~~~~----~~~~~~~~~~~~-------- 47 (293)
T cd04842 2 LGLTGKGQIVG----------VADTGLDTNHCFFYDPNF------------NKTNL----FHRKIVRYDSLS-------- 47 (293)
T ss_pred CCcCCcCCEEE----------EEecCCCCCCCcccCCCc------------CcCcc----CcccEEEeeccC--------
Confidence 35689999999 999999999999976421 01111 234444332221
Q ss_pred CCcCCCCCCCCCCCCchhhhhhhcCCCCCCCceeeecCceeccccCCCc
Q 043644 177 NITIAMNSAGDPVGHGTHNSSIAAGSYVEGASYFGYATGIARGTDGVPL 225 (231)
Q Consensus 177 ~~~~~~~s~~D~~GHGTHvAgtaAG~~v~~a~~~G~~~g~a~G~ap~~~ 225 (231)
....|..||||||||+|+|+...... .....|+||.++
T Consensus 48 ------~~~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~ 85 (293)
T cd04842 48 ------DTKDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAK 85 (293)
T ss_pred ------CCCCCCCCCcchhheeeccCCcCCCc-----ccccccccccCe
Confidence 12338999999999999998644321 225678888775
No 14
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=99.30 E-value=2.4e-12 Score=112.43 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=45.4
Q ss_pred CCcCCCCCCceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhhhh
Q 043644 94 AWPVSKFGQDFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRLLA 173 (231)
Q Consensus 94 ~w~~~~~G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~~~ 173 (231)
+|....+|+||+|+ ||||||+++||+|.++.. ..+.|...
T Consensus 17 ~~~~~~~G~gv~Va----------ViDsGi~~~h~~~~~~~~---------------------------~~~~~~~~--- 56 (255)
T cd04077 17 YYYDSSTGSGVDVY----------VLDTGIRTTHVEFGGRAI---------------------------WGADFVGG--- 56 (255)
T ss_pred eEecCCCCCCcEEE----------EEcCCCCCCChhhhCCee---------------------------eeeecCCC---
Confidence 55567899999999 999999999999976420 00112111
Q ss_pred cCCCCcCCCCCCCCCCCCchhhhhhhcCCC
Q 043644 174 KFPNITIAMNSAGDPVGHGTHNSSIAAGSY 203 (231)
Q Consensus 174 ~~g~~~~~~~s~~D~~GHGTHvAgtaAG~~ 203 (231)
....|.+||||||||+++|+.
T Consensus 57 ---------~~~~d~~~HGT~vAgiia~~~ 77 (255)
T cd04077 57 ---------DPDSDCNGHGTHVAGTVGGKT 77 (255)
T ss_pred ---------CCCCCCCccHHHHHHHHHccc
Confidence 126789999999999999864
No 15
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=99.27 E-value=1.4e-12 Score=116.00 Aligned_cols=83 Identities=19% Similarity=0.191 Sum_probs=56.2
Q ss_pred CCCCcCCCCCCceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhh
Q 043644 92 SGAWPVSKFGQDFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRL 171 (231)
Q Consensus 92 ~~~w~~~~~G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~ 171 (231)
..+|..+.+|+|++|+ ||||||+.+||+|.++-... ..| + |....
T Consensus 29 ~~~w~~g~~G~gv~Va----------ViDtGv~~~h~~l~~~~~~~--~~~--------~---------------~~~~~ 73 (297)
T cd04059 29 TPAWEQGITGKGVTVA----------VVDDGLEITHPDLKDNYDPE--ASY--------D---------------FNDND 73 (297)
T ss_pred HHHHhCCCCCcceEEE----------EEeCCcccCCHhHhhccccc--ccc--------c---------------ccCCC
Confidence 3488888899999999 99999999999998652110 001 1 11110
Q ss_pred hhcCCCCcCCCCCCC--CCCCCchhhhhhhcCCCCCCCceeeecCceeccccCCCcc
Q 043644 172 LAKFPNITIAMNSAG--DPVGHGTHNSSIAAGSYVEGASYFGYATGIARGTDGVPLY 226 (231)
Q Consensus 172 ~~~~g~~~~~~~s~~--D~~GHGTHvAgtaAG~~v~~a~~~G~~~g~a~G~ap~~~~ 226 (231)
....+. |.+||||||||+++|+.... -...||||.++.
T Consensus 74 ---------~~~~~~~~~~~gHGT~vAgiiag~~~~~--------~~~~GvAp~a~l 113 (297)
T cd04059 74 ---------PDPTPRYDDDNSHGTRCAGEIAAVGNNG--------ICGVGVAPGAKL 113 (297)
T ss_pred ---------CCCCCccccccccCcceeeEEEeecCCC--------cccccccccceE
Confidence 011223 88999999999999985321 124688888764
No 16
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=99.23 E-value=9.6e-12 Score=109.53 Aligned_cols=79 Identities=20% Similarity=0.221 Sum_probs=49.1
Q ss_pred CCceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhhhhcCCCCcC
Q 043644 101 GQDFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRLLAKFPNITI 180 (231)
Q Consensus 101 G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~~~~~g~~~~ 180 (231)
|+||+|| ||||||+++||+|.+. |++.... .+. ..+ .++ +.. .
T Consensus 1 G~GV~Va----------ViDsGi~~~hp~l~~~--------~~~~~~~--~~~----~~~----~~~-d~~--------~ 43 (264)
T cd07481 1 GTGIVVA----------NIDTGVDWTHPALKNK--------YRGWGGG--SAD----HDY----NWF-DPV--------G 43 (264)
T ss_pred CCCcEEE----------EEeCCCCCCChhHhhc--------ccccCCC--Ccc----ccc----ccc-cCC--------C
Confidence 7999999 9999999999999864 1111000 000 000 001 000 1
Q ss_pred CCCCCCCCCCCchhhhhhhcCCCCCCCceeeecCceeccccCCCc
Q 043644 181 AMNSAGDPVGHGTHNSSIAAGSYVEGASYFGYATGIARGTDGVPL 225 (231)
Q Consensus 181 ~~~s~~D~~GHGTHvAgtaAG~~v~~a~~~G~~~g~a~G~ap~~~ 225 (231)
....|.|..||||||||+|+|+...+ ...|+||.+.
T Consensus 44 ~~~~~~d~~~HGT~vagii~g~~~~~---------~~~GvAp~a~ 79 (264)
T cd07481 44 NTPLPYDDNGHGTHTMGTMVGNDGDG---------QQIGVAPGAR 79 (264)
T ss_pred CCCCCCCCCCchhhhhhheeecCCCC---------CceEECCCCe
Confidence 12467889999999999999875331 1267777765
No 17
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.20 E-value=2e-11 Score=106.44 Aligned_cols=87 Identities=22% Similarity=0.202 Sum_probs=51.4
Q ss_pred CceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcc---cccccccccCCcCCCceeeeeeeehhhhhhcCCCC
Q 043644 102 QDFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWK---GECKTGTQFNSSLCNKKLIGAQIFNRRLLAKFPNI 178 (231)
Q Consensus 102 ~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~---g~c~~g~~f~~~~cn~kliGa~~f~~~~~~~~g~~ 178 (231)
+||+|| |||||||++||+|.++- |. ..|..+.+.+ ++. .+-.. + ++. .
T Consensus 2 ~~v~V~----------iiDtGid~~h~~l~~~~-------~~~~~~~~~~~~~~~---~~~-~~~~~-~--~~~-----~ 52 (259)
T cd07473 2 GDVVVA----------VIDTGVDYNHPDLKDNM-------WVNPGEIPGNGIDDD---GNG-YVDDI-Y--GWN-----F 52 (259)
T ss_pred CCCEEE----------EEeCCCCCCChhhcccc-------ccCcccccccCcccC---CCC-cccCC-C--ccc-----c
Confidence 689999 99999999999999752 22 1122221111 011 00000 0 010 0
Q ss_pred cCCCCCCCCCCCCchhhhhhhcCCCCCCCceeeecCceeccccCCCc
Q 043644 179 TIAMNSAGDPVGHGTHNSSIAAGSYVEGASYFGYATGIARGTDGVPL 225 (231)
Q Consensus 179 ~~~~~s~~D~~GHGTHvAgtaAG~~v~~a~~~G~~~g~a~G~ap~~~ 225 (231)
......+.|..||||||||+|+|+...+. ...|+||.+.
T Consensus 53 ~~~~~~~~d~~~HGT~va~ii~~~~~~~~--------~~~GvAp~a~ 91 (259)
T cd07473 53 VNNDNDPMDDNGHGTHVAGIIGAVGNNGI--------GIAGVAWNVK 91 (259)
T ss_pred cCCCCCCCCCCCcHHHHHHHHHCcCCCCC--------ceEEeCCCCE
Confidence 01234678999999999999999865432 2456777664
No 18
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.19 E-value=9.9e-12 Score=111.30 Aligned_cols=72 Identities=18% Similarity=0.154 Sum_probs=51.3
Q ss_pred CCCcCCC-CCCceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhh
Q 043644 93 GAWPVSK-FGQDFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRL 171 (231)
Q Consensus 93 ~~w~~~~-~G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~ 171 (231)
..|.... .|+||.|+ |||||||.+||||.++-... . .+
T Consensus 6 ~aw~~~~g~G~gV~Va----------viDtGid~~Hpdl~~~~~~~-----------------------------~-~~- 44 (277)
T cd04843 6 YAWTKPGGSGQGVTFV----------DIEQGWNLNHEDLVGNGITL-----------------------------I-SG- 44 (277)
T ss_pred HHHHhcCCCCCcEEEE----------EecCCCCCCChhhccccccc-----------------------------c-CC-
Confidence 4676643 48999999 99999999999998652100 0 00
Q ss_pred hhcCCCCcCCCCCCCCCCCCchhhhhhhcCCCCCCCceeeecCceeccccCCCc
Q 043644 172 LAKFPNITIAMNSAGDPVGHGTHNSSIAAGSYVEGASYFGYATGIARGTDGVPL 225 (231)
Q Consensus 172 ~~~~g~~~~~~~s~~D~~GHGTHvAgtaAG~~v~~a~~~G~~~g~a~G~ap~~~ 225 (231)
..+.|++|||||||||||+... ..| ..|+||.++
T Consensus 45 -----------~~~~d~~gHGT~VAGiIaa~~n--------~~G-~~GvAp~a~ 78 (277)
T cd04843 45 -----------LTDQADSDHGTAVLGIIVAKDN--------GIG-VTGIAHGAQ 78 (277)
T ss_pred -----------CCCCCCCCCcchhheeeeeecC--------CCc-eeeeccCCE
Confidence 1256889999999999998631 123 468888775
No 19
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.19 E-value=1.3e-11 Score=108.49 Aligned_cols=72 Identities=24% Similarity=0.229 Sum_probs=50.3
Q ss_pred ceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhhhhcCCCCcCCC
Q 043644 103 DFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRLLAKFPNITIAM 182 (231)
Q Consensus 103 gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~~~~~g~~~~~~ 182 (231)
||+|| ||||||+++||+|....+ .++.++++.+.|.+..
T Consensus 1 Gv~Va----------viDsGi~~~h~~~~~~~~--------------------~~~~~i~~~~~~~~~~----------- 39 (261)
T cd07493 1 GITIA----------VIDAGFPKVHEAFAFKHL--------------------FKNLRILGEYDFVDNS----------- 39 (261)
T ss_pred CCEEE----------EEccCCCccCcchhhhcc--------------------ccCCceeeeecCccCC-----------
Confidence 78999 999999999999952210 1244566666664321
Q ss_pred CC-CCCCCCCchhhhhhhcCCCCCCCceeeecCceeccccCCCc
Q 043644 183 NS-AGDPVGHGTHNSSIAAGSYVEGASYFGYATGIARGTDGVPL 225 (231)
Q Consensus 183 ~s-~~D~~GHGTHvAgtaAG~~v~~a~~~G~~~g~a~G~ap~~~ 225 (231)
.. ..|.+||||||||+++|+.. +...|+||.+.
T Consensus 40 ~~~~~~~~~HGT~vagiia~~~~----------~~~~GvAp~a~ 73 (261)
T cd07493 40 NNTNYTDDDHGTAVLSTMAGYTP----------GVMVGTAPNAS 73 (261)
T ss_pred CCCCCCCCCchhhhheeeeeCCC----------CCEEEeCCCCE
Confidence 12 37889999999999999852 23467777654
No 20
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.16 E-value=3.5e-11 Score=104.73 Aligned_cols=73 Identities=26% Similarity=0.314 Sum_probs=50.7
Q ss_pred CCceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhhhhcCCCCcC
Q 043644 101 GQDFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRLLAKFPNITI 180 (231)
Q Consensus 101 G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~~~~~g~~~~ 180 (231)
|+||+|+ ||||||+.+||+|.+.... .+ . +.... .
T Consensus 1 G~gv~Va----------viDsGv~~~h~~l~~~~~~----~~--------~---------------~~~~~--------~ 35 (264)
T cd07487 1 GKGITVA----------VLDTGIDAPHPDFDGRIIR----FA--------D---------------FVNTV--------N 35 (264)
T ss_pred CCCcEEE----------EEeCCCCCCCccccccccc----cc--------c---------------ccccc--------c
Confidence 7999999 9999999999999875311 00 0 00000 0
Q ss_pred CCCCCCCCCCCchhhhhhhcCCCCCCCceeeecCceeccccCCCc
Q 043644 181 AMNSAGDPVGHGTHNSSIAAGSYVEGASYFGYATGIARGTDGVPL 225 (231)
Q Consensus 181 ~~~s~~D~~GHGTHvAgtaAG~~v~~a~~~G~~~g~a~G~ap~~~ 225 (231)
......|..||||||||+++|+.... .+...|+||.+.
T Consensus 36 ~~~~~~d~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~ 73 (264)
T cd07487 36 GRTTPYDDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGAN 73 (264)
T ss_pred CCCCCCCCCCchHHHHHHHhcCCccc-------CCceEEECCCCe
Confidence 12467788999999999999996432 344677777765
No 21
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=99.16 E-value=3.8e-11 Score=103.84 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=50.4
Q ss_pred CCCceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhhhhcCCCCc
Q 043644 100 FGQDFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRLLAKFPNIT 179 (231)
Q Consensus 100 ~G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~~~~~g~~~ 179 (231)
+|+|++|+ |||+||+++||+|.+..... . .+ .... .
T Consensus 1 tG~gv~Va----------iiDsG~~~~h~~l~~~~~~~-------~-----~~--------------~~~~--------~ 36 (267)
T cd04848 1 TGAGVKVG----------VIDSGIDLSHPEFAGRVSEA-------S-----YY--------------VAVN--------D 36 (267)
T ss_pred CCCceEEE----------EEeCCCCCCCccccCccccc-------c-----cc--------------cccc--------c
Confidence 59999999 99999999999998752110 0 00 0000 0
Q ss_pred CCCCCCCCCCCCchhhhhhhcCCCCCCCceeeecCceeccccCCCc
Q 043644 180 IAMNSAGDPVGHGTHNSSIAAGSYVEGASYFGYATGIARGTDGVPL 225 (231)
Q Consensus 180 ~~~~s~~D~~GHGTHvAgtaAG~~v~~a~~~G~~~g~a~G~ap~~~ 225 (231)
.......|.+||||||||+|+|+... ....|+||.++
T Consensus 37 ~~~~~~~~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~ 73 (267)
T cd04848 37 AGYASNGDGDSHGTHVAGVIAAARDG---------GGMHGVAPDAT 73 (267)
T ss_pred ccCCCCCCCCChHHHHHHHHhcCcCC---------CCcccCCcCCE
Confidence 00134668899999999999998643 55677888765
No 22
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.15 E-value=3.8e-11 Score=104.41 Aligned_cols=70 Identities=26% Similarity=0.331 Sum_probs=46.9
Q ss_pred ceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhhhhcCCCCcCCC
Q 043644 103 DFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRLLAKFPNITIAM 182 (231)
Q Consensus 103 gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~~~~~g~~~~~~ 182 (231)
||+|| ||||||+++||+|.+.-. .| +.|.... ....
T Consensus 1 GV~Va----------viDsGv~~~hp~l~~~~~-----~~----------------------~~~~~~~-------~~~~ 36 (254)
T cd07490 1 GVTVA----------VLDTGVDADHPDLAGRVA-----QW----------------------ADFDENR-------RISA 36 (254)
T ss_pred CCEEE----------EEeCCCCCCCcchhcccC-----Cc----------------------eeccCCC-------CCCC
Confidence 78999 999999999999976421 01 1111100 0112
Q ss_pred CCCCCCCCCchhhhhhhcCCCCCCCceeeecCceeccccCCCc
Q 043644 183 NSAGDPVGHGTHNSSIAAGSYVEGASYFGYATGIARGTDGVPL 225 (231)
Q Consensus 183 ~s~~D~~GHGTHvAgtaAG~~v~~a~~~G~~~g~a~G~ap~~~ 225 (231)
....|.+||||||||+|+|+.. .+...||||.++
T Consensus 37 ~~~~d~~~HGT~vAgiia~~~~---------~~~~~GvAp~a~ 70 (254)
T cd07490 37 TEVFDAGGHGTHVSGTIGGGGA---------KGVYIGVAPEAD 70 (254)
T ss_pred CCCCCCCCcHHHHHHHHhcCCC---------CCCEEEECCCCE
Confidence 3567889999999999999864 233457777764
No 23
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=99.14 E-value=4.6e-11 Score=104.50 Aligned_cols=78 Identities=26% Similarity=0.294 Sum_probs=53.5
Q ss_pred CCCCcCCCCCCceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhh
Q 043644 92 SGAWPVSKFGQDFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRL 171 (231)
Q Consensus 92 ~~~w~~~~~G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~ 171 (231)
...|... +|+|++|+ ||||||+++||+|.... +...+.+.+.
T Consensus 19 ~~~~~~~-~G~gv~I~----------viDsGi~~~h~~l~~~~--------------------------~~~~~~~~~~- 60 (260)
T cd07484 19 PKAWDIT-GGSGVTVA----------VVDTGVDPTHPDLLKVK--------------------------FVLGYDFVDN- 60 (260)
T ss_pred HHHHhhc-CCCCCEEE----------EEeCCCCCCCcccccCC--------------------------cccceeccCC-
Confidence 4578776 99999999 99999999999984321 1111222211
Q ss_pred hhcCCCCcCCCCCCCCCCCCchhhhhhhcCCCCCCCceeeecCceeccccCCCc
Q 043644 172 LAKFPNITIAMNSAGDPVGHGTHNSSIAAGSYVEGASYFGYATGIARGTDGVPL 225 (231)
Q Consensus 172 ~~~~g~~~~~~~s~~D~~GHGTHvAgtaAG~~v~~a~~~G~~~g~a~G~ap~~~ 225 (231)
...+.|..||||||||+++|....+ ....|+||.++
T Consensus 61 ----------~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~ 96 (260)
T cd07484 61 ----------DSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAK 96 (260)
T ss_pred ----------CCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCE
Confidence 1236788999999999999875332 22357777664
No 24
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.13 E-value=6.5e-11 Score=105.07 Aligned_cols=86 Identities=28% Similarity=0.361 Sum_probs=51.8
Q ss_pred CCceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhhhhcCC----
Q 043644 101 GQDFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRLLAKFP---- 176 (231)
Q Consensus 101 G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~~~~~g---- 176 (231)
|+||+|| ||||||+++||+|.+... .++++++.+.|.........
T Consensus 1 G~gV~Va----------ViDsGi~~~hp~l~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~ 49 (295)
T cd07474 1 GKGVKVA----------VIDTGIDYTHPDLGGPGF---------------------PNDKVKGGYDFVDDDYDPMDTRPY 49 (295)
T ss_pred CCCCEEE----------EEECCcCCCCcccccCCC---------------------CCCceeeeeECccCCCCccccccc
Confidence 7999999 999999999999985421 12223333333221000000
Q ss_pred CCcCCCCCCCCCCCCchhhhhhhcCCCCCCCceeeecCceeccccCCCc
Q 043644 177 NITIAMNSAGDPVGHGTHNSSIAAGSYVEGASYFGYATGIARGTDGVPL 225 (231)
Q Consensus 177 ~~~~~~~s~~D~~GHGTHvAgtaAG~~v~~a~~~G~~~g~a~G~ap~~~ 225 (231)
..........|..||||||||+++|.... .....|+||.+.
T Consensus 50 ~~~~~~~~~~~~~~HGT~vAgiiag~~~n--------~~~~~Giap~a~ 90 (295)
T cd07474 50 PSPLGDASAGDATGHGTHVAGIIAGNGVN--------VGTIKGVAPKAD 90 (295)
T ss_pred ccccccCCCCCCCCcHHHHHHHHhcCCCc--------cCceEeECCCCe
Confidence 00001234667999999999999998644 234466666654
No 25
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.10 E-value=5.2e-11 Score=104.93 Aligned_cols=71 Identities=14% Similarity=0.073 Sum_probs=45.1
Q ss_pred CCceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhhhhcCCCCcC
Q 043644 101 GQDFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRLLAKFPNITI 180 (231)
Q Consensus 101 G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~~~~~g~~~~ 180 (231)
+++|+|| |||||||++||+|.++-. .+.+|. .... ....
T Consensus 2 ~~~V~Va----------VIDsGvd~~hpdl~~~i~------------~~~~~~---------------~~~~----~~~~ 40 (247)
T cd07491 2 LKRIKVA----------LIDDGVDILDSDLQGKII------------GGKSFS---------------PYEG----DGNK 40 (247)
T ss_pred CCCCEEE----------EECCCcCCCchhhccccc------------cCCCCC---------------CCCC----Cccc
Confidence 6899999 999999999999986411 011221 1000 0000
Q ss_pred CCCCCCCCCCCchhhhhhhcCCCCCCCceeeec
Q 043644 181 AMNSAGDPVGHGTHNSSIAAGSYVEGASYFGYA 213 (231)
Q Consensus 181 ~~~s~~D~~GHGTHvAgtaAG~~v~~a~~~G~~ 213 (231)
......|.+|||||||||++| ..+++.++-+.
T Consensus 41 ~~~~~~d~~gHGT~vAgiI~g-vap~a~i~~~k 72 (247)
T cd07491 41 VSPYYVSADGHGTAMARMICR-ICPSAKLYVIK 72 (247)
T ss_pred CCCCCCCCCCcHHHHHHHHHH-HCCCCeEEEEE
Confidence 112346889999999999986 34566665544
No 26
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.09 E-value=6.4e-11 Score=103.48 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=18.0
Q ss_pred CCCCCCCCchhhhhhhcCCCC
Q 043644 184 SAGDPVGHGTHNSSIAAGSYV 204 (231)
Q Consensus 184 s~~D~~GHGTHvAgtaAG~~v 204 (231)
.+.|.+||||||||+|+|+..
T Consensus 31 ~~~~~~~HGT~vAgiia~~~~ 51 (239)
T cd05561 31 GAPAPSAHGTAVASLLAGAGA 51 (239)
T ss_pred CCCCCCCCHHHHHHHHhCCCC
Confidence 466789999999999999864
No 27
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=99.08 E-value=1e-10 Score=104.64 Aligned_cols=67 Identities=15% Similarity=0.149 Sum_probs=42.7
Q ss_pred CCCCceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhhhhcCCCC
Q 043644 99 KFGQDFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRLLAKFPNI 178 (231)
Q Consensus 99 ~~G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~~~~~g~~ 178 (231)
.+|+||+|+ |||||||.+||++.+..-...+.++ .+...
T Consensus 2 ~tG~gv~va----------viDtGvd~~~~~~~~~~~~~l~~~~-----------------------~~~~~-------- 40 (275)
T cd05562 2 VDGTGIKIG----------VISDGFDGLGDAADDQASGDLPGNV-----------------------NVLGD-------- 40 (275)
T ss_pred CCCCceEEE----------EEeCCccccccccccccCCCCCcce-----------------------eeccc--------
Confidence 579999999 9999999999865432111111111 01000
Q ss_pred cCCCCCCCCCCCCchhhhhhhcCCCCCCCcee
Q 043644 179 TIAMNSAGDPVGHGTHNSSIAAGSYVEGASYF 210 (231)
Q Consensus 179 ~~~~~s~~D~~GHGTHvAgtaAG~~v~~a~~~ 210 (231)
.....|.+||||||||||+|- -+++.++
T Consensus 41 ---~~~~~d~~gHGT~vAgii~Gv-AP~a~l~ 68 (275)
T cd05562 41 ---LDGGSGGGDEGRAMLEIIHDI-APGAELA 68 (275)
T ss_pred ---cCCCCCCCchHHHHHHHHhcc-CCCCEEE
Confidence 124668999999999999753 3455554
No 28
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=99.07 E-value=8.1e-11 Score=104.12 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=17.9
Q ss_pred CCCCCCCCCchhhhhhhcCCC
Q 043644 183 NSAGDPVGHGTHNSSIAAGSY 203 (231)
Q Consensus 183 ~s~~D~~GHGTHvAgtaAG~~ 203 (231)
....|..||||||||+++|+.
T Consensus 47 ~~~~d~~gHGT~vAgiia~~~ 67 (294)
T cd07482 47 NDIVDKLGHGTAVAGQIAANG 67 (294)
T ss_pred CcCCCCCCcHhHHHHHHhcCC
Confidence 456788999999999999863
No 29
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.05 E-value=1.7e-10 Score=102.71 Aligned_cols=35 Identities=20% Similarity=0.126 Sum_probs=25.7
Q ss_pred CCCCCCCCCchhhhhhhcCCCCCCCceeeecCceeccccCCCc
Q 043644 183 NSAGDPVGHGTHNSSIAAGSYVEGASYFGYATGIARGTDGVPL 225 (231)
Q Consensus 183 ~s~~D~~GHGTHvAgtaAG~~v~~a~~~G~~~g~a~G~ap~~~ 225 (231)
...+|..||||||||||+|+...+. -..|+||.|+
T Consensus 65 ~~~~~~~~HGT~vAgiiaa~~~~~~--------~~~GvAp~a~ 99 (285)
T cd07496 65 SGVSPSSWHGTHVAGTIAAVTNNGV--------GVAGVAWGAR 99 (285)
T ss_pred CCCCCCCCCHHHHHHHHhCcCCCCC--------CceeecCCCe
Confidence 3567889999999999999865221 2257777775
No 30
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.01 E-value=2.7e-10 Score=97.52 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=43.3
Q ss_pred ceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhhhhcCCCCcCCC
Q 043644 103 DFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRLLAKFPNITIAM 182 (231)
Q Consensus 103 gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~~~~~g~~~~~~ 182 (231)
||+|| ||||||+++||+|.++-.. + ..|. ++ ++. .+.
T Consensus 1 gV~Va----------ViDsGi~~~h~~l~~~~~~-----~-------~~~~---~~------~~~------------~~~ 37 (222)
T cd07492 1 GVRVA----------VIDSGVDTDHPDLGNLALD-----G-------EVTI---DL------EII------------VVS 37 (222)
T ss_pred CCEEE----------EEeCCCCCCChhhhccccc-----c-------cccc---cc------ccc------------cCC
Confidence 68999 9999999999999865210 0 0110 00 000 112
Q ss_pred CCCCCCCCCchhhhhhhcCCCCCCCceeee
Q 043644 183 NSAGDPVGHGTHNSSIAAGSYVEGASYFGY 212 (231)
Q Consensus 183 ~s~~D~~GHGTHvAgtaAG~~v~~a~~~G~ 212 (231)
....|.+||||||||++++.. +++.++.+
T Consensus 38 ~~~~d~~gHGT~vAgiia~~~-p~~~i~~~ 66 (222)
T cd07492 38 AEGGDKDGHGTACAGIIKKYA-PEAEIGSI 66 (222)
T ss_pred CCCCCCCCcHHHHHHHHHccC-CCCeEEEE
Confidence 356789999999999999985 55555443
No 31
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.99 E-value=2.8e-10 Score=102.91 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=27.1
Q ss_pred CCCCcCCCCCCceEEEEecCcceeeEEeeceeccCccccCCC
Q 043644 92 SGAWPVSKFGQDFIIACQTRHHTFISMLYTGVWPESESYDDS 133 (231)
Q Consensus 92 ~~~w~~~~~G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~ 133 (231)
..+|..+.+|+|++|+ ||||||+.+|| |.++
T Consensus 11 ~~~~~~G~~G~Gv~Va----------ViDTGv~~~h~-~~~~ 41 (298)
T cd07494 11 TRVHQRGITGRGVRVA----------MVDTGFYAHPF-FESR 41 (298)
T ss_pred hHHHhcCCCCCCcEEE----------EEeCCCcCCch-hhcC
Confidence 4578888899999999 99999999998 7654
No 32
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=98.97 E-value=3.8e-10 Score=96.36 Aligned_cols=67 Identities=22% Similarity=0.166 Sum_probs=46.0
Q ss_pred ceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhhhhcCCCCcCCC
Q 043644 103 DFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRLLAKFPNITIAM 182 (231)
Q Consensus 103 gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~~~~~g~~~~~~ 182 (231)
||+|| ||||||+++||+|.+.- +..+.|... ..
T Consensus 1 gv~V~----------iiDsGv~~~h~~l~~~~---------------------------~~~~~~~~~----------~~ 33 (229)
T cd07477 1 GVKVA----------VIDTGIDSSHPDLKLNI---------------------------VGGANFTGD----------DN 33 (229)
T ss_pred CCEEE----------EEcCCCCCCChhHhccc---------------------------cCcccccCC----------CC
Confidence 68899 99999999999997641 011112111 00
Q ss_pred CCCCCCCCCchhhhhhhcCCCCCCCceeeecCceeccccCCCc
Q 043644 183 NSAGDPVGHGTHNSSIAAGSYVEGASYFGYATGIARGTDGVPL 225 (231)
Q Consensus 183 ~s~~D~~GHGTHvAgtaAG~~v~~a~~~G~~~g~a~G~ap~~~ 225 (231)
..+.|..||||||||+++|..... ...|+||.++
T Consensus 34 ~~~~~~~~HGT~vA~ii~~~~~~~---------~~~giap~a~ 67 (229)
T cd07477 34 NDYQDGNGHGTHVAGIIAALDNGV---------GVVGVAPEAD 67 (229)
T ss_pred CCCCCCCCCHHHHHHHHhcccCCC---------ccEeeCCCCE
Confidence 356788999999999999986432 4467777764
No 33
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.92 E-value=8.1e-10 Score=95.50 Aligned_cols=34 Identities=26% Similarity=0.199 Sum_probs=25.4
Q ss_pred CCCCCCCCchhhhhhhcCCCCCCCceeeecCceeccccCCCc
Q 043644 184 SAGDPVGHGTHNSSIAAGSYVEGASYFGYATGIARGTDGVPL 225 (231)
Q Consensus 184 s~~D~~GHGTHvAgtaAG~~v~~a~~~G~~~g~a~G~ap~~~ 225 (231)
.+.|..||||||||+++|+...+ ....|+||.+.
T Consensus 35 ~~~~~~~HGT~vAgiiag~~~~~--------~~~~Gvap~a~ 68 (242)
T cd07498 35 PTSDIDGHGTACAGVAAAVGNNG--------LGVAGVAPGAK 68 (242)
T ss_pred CCCCCCCCHHHHHHHHHhccCCC--------ceeEeECCCCE
Confidence 46789999999999999986322 23467777764
No 34
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.86 E-value=1.2e-09 Score=97.44 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=17.4
Q ss_pred CCCCCCCchhhhhhhcCCCC
Q 043644 185 AGDPVGHGTHNSSIAAGSYV 204 (231)
Q Consensus 185 ~~D~~GHGTHvAgtaAG~~v 204 (231)
+.|.+||||||||+|++...
T Consensus 34 ~~d~~gHGT~vAgiia~~~~ 53 (291)
T cd04847 34 TADDLGHGTAVAGLALYGDL 53 (291)
T ss_pred cCCCCCChHHHHHHHHcCcc
Confidence 67999999999999997653
No 35
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=98.84 E-value=2.3e-09 Score=93.87 Aligned_cols=71 Identities=23% Similarity=0.215 Sum_probs=45.9
Q ss_pred EeeceeccCccccC-CCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhhhhcCCCCcCCCCCCCCCCCCchhhh
Q 043644 118 MLYTGVWPESESYD-DSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRLLAKFPNITIAMNSAGDPVGHGTHNS 196 (231)
Q Consensus 118 VIDTGId~~HpdF~-~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~~~~~g~~~~~~~s~~D~~GHGTHvA 196 (231)
|||||||++||+|. ++- . ..+..+.+.|.++. .......|.+|||||||
T Consensus 4 viDtGid~~h~~~~~~~~-~---------------------~~~~~~~~~~~~~~--------~~~~~~~~~~~HGT~va 53 (282)
T PF00082_consen 4 VIDTGIDPNHPDFSSGNF-I---------------------WSKVPGGYNFVDGN--------PNPSPSDDDNGHGTHVA 53 (282)
T ss_dssp EEESBBTTTSTTTTCTTE-E---------------------EEEEEEEEETTTTB--------STTTSSSTSSSHHHHHH
T ss_pred EEcCCcCCCChhHccCCc-c---------------------cccccceeeccCCC--------CCcCccccCCCccchhh
Confidence 99999999999998 431 0 11222233333221 11246788999999999
Q ss_pred hhhcCCCCCCCceeeecCceeccccCCCc
Q 043644 197 SIAAGSYVEGASYFGYATGIARGTDGVPL 225 (231)
Q Consensus 197 gtaAG~~v~~a~~~G~~~g~a~G~ap~~~ 225 (231)
|+|+|.. . .+ .....|+||.+.
T Consensus 54 ~ii~~~~-~-~~-----~~~~~Gva~~a~ 75 (282)
T PF00082_consen 54 GIIAGNG-G-NN-----GPGINGVAPNAK 75 (282)
T ss_dssp HHHHHTT-S-SS-----SSSETCSSTTSE
T ss_pred hhccccc-c-cc-----cccccccccccc
Confidence 9999997 3 22 233478888775
No 36
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=98.43 E-value=4e-07 Score=86.20 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=21.4
Q ss_pred CCCCceEEEEecCcceeeEEeeceeccCccccC
Q 043644 99 KFGQDFIIACQTRHHTFISMLYTGVWPESESYD 131 (231)
Q Consensus 99 ~~G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~ 131 (231)
..|.||+|| |||||||+.||-|+
T Consensus 20 ~dgr~v~ia----------i~dtgvd~~~~~lq 42 (412)
T cd04857 20 YDGRGVLIA----------ILDTGVDPGAPGLQ 42 (412)
T ss_pred CCCCCcEEE----------EecCCCCCCCCccc
Confidence 469999999 99999999999995
No 37
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=98.38 E-value=5e-07 Score=75.66 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.0
Q ss_pred CCCCCCCCchhhhhhhcCCCCC
Q 043644 184 SAGDPVGHGTHNSSIAAGSYVE 205 (231)
Q Consensus 184 s~~D~~GHGTHvAgtaAG~~v~ 205 (231)
...|..+||||||++++|....
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~ 60 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANN 60 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCC
Confidence 4678899999999999999753
No 38
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.6e-07 Score=91.68 Aligned_cols=100 Identities=21% Similarity=0.370 Sum_probs=69.1
Q ss_pred HHHHHHHhcCCCeeEEecCcccccc------------cCCCCccc------------------C-----CC-------CC
Q 043644 54 PADLESLKSSPGYISSLEDLPVKPD------------TTHSSQFL------------------G-----LN-------SK 91 (231)
Q Consensus 54 ~~~~~~L~~~p~V~~Vepd~~~~l~------------tt~s~~~~------------------g-----l~-------~~ 91 (231)
+-++++|+.+|+|..|.|-+.+... .+.+..++ + +. ++
T Consensus 111 ~~~ierLe~hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~A 190 (1033)
T KOG4266|consen 111 VGEIERLEMHPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGA 190 (1033)
T ss_pred hheeeehhcCCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhch
Confidence 3458999999999999998865421 00000010 0 00 12
Q ss_pred CCCCcCCCCCCceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhh
Q 043644 92 SGAWPVSKFGQDFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRL 171 (231)
Q Consensus 92 ~~~w~~~~~G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~ 171 (231)
+.+|..+.+|++|+++ |.|||+.-+||.|+.-- + -.+| .+
T Consensus 191 d~LWk~GyTGa~VkvA----------iFDTGl~~~HPHFrnvK--E-RTNW-------------------------TN-- 230 (1033)
T KOG4266|consen 191 DHLWKKGYTGAKVKVA----------IFDTGLRADHPHFRNVK--E-RTNW-------------------------TN-- 230 (1033)
T ss_pred hhHHhccccCCceEEE----------EeecccccCCccccchh--h-hcCC-------------------------cC--
Confidence 4589999999999999 99999999999997521 0 0111 11
Q ss_pred hhcCCCCcCCCCCCCCCCCCchhhhhhhcCCC
Q 043644 172 LAKFPNITIAMNSAGDPVGHGTHNSSIAAGSY 203 (231)
Q Consensus 172 ~~~~g~~~~~~~s~~D~~GHGTHvAgtaAG~~ 203 (231)
..+-.|..||||.|||.|||..
T Consensus 231 ----------E~tLdD~lgHGTFVAGvia~~~ 252 (1033)
T KOG4266|consen 231 ----------EDTLDDNLGHGTFVAGVIAGRN 252 (1033)
T ss_pred ----------ccccccCcccceeEeeeeccch
Confidence 1356789999999999999985
No 39
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.35 E-value=3.3e-07 Score=66.44 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=27.1
Q ss_pred eeeeCHHHHHHHhcCCCeeEEecCcccccc
Q 043644 49 CVSLTPADLESLKSSPGYISSLEDLPVKPD 78 (231)
Q Consensus 49 aa~lt~~~~~~L~~~p~V~~Vepd~~~~l~ 78 (231)
+++|+++++++|+++|+|++||||+.++++
T Consensus 53 s~~l~~~~i~~L~~~p~V~~Ve~D~~v~l~ 82 (82)
T PF05922_consen 53 SAKLSEEEIEKLRKDPGVKSVEPDQVVSLH 82 (82)
T ss_dssp EEEE-HHHHHHHHTSTTEEEEEEECEEEE-
T ss_pred EEEeCHHHHHHHHcCCCeEEEEeCceEecC
Confidence 999999999999999999999999998763
No 40
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.6e-06 Score=79.88 Aligned_cols=64 Identities=23% Similarity=0.225 Sum_probs=46.5
Q ss_pred CCCcC--CCCCCceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhh
Q 043644 93 GAWPV--SKFGQDFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRR 170 (231)
Q Consensus 93 ~~w~~--~~~G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~ 170 (231)
..|.. ..+|+|+.++ ||||||+..||+|.++... + +.|.+.
T Consensus 131 ~~~~~~~~~~g~gv~~~----------vid~gv~~~~~~~~~~~~~------------~---------------~~~~~~ 173 (508)
T COG1404 131 ALVANGAGLTGKGVTVA----------VIDTGVDASHPDLAGSAVA------------G---------------GDFVDG 173 (508)
T ss_pred cccccccCCCCCCeEEE----------EeccCCCCCChhhhccccc------------c---------------cccccC
Confidence 36665 7889999999 9999999999999875310 0 111111
Q ss_pred hhhcCCCCcCCCC-CCCCCCCCchhhhhhhcCCC
Q 043644 171 LLAKFPNITIAMN-SAGDPVGHGTHNSSIAAGSY 203 (231)
Q Consensus 171 ~~~~~g~~~~~~~-s~~D~~GHGTHvAgtaAG~~ 203 (231)
... ...|.+||||||++++++..
T Consensus 174 ----------~~~~~~~d~~~hGt~vag~ia~~~ 197 (508)
T COG1404 174 ----------DPEPPFLDDNGHGTHVAGTIAAVI 197 (508)
T ss_pred ----------CCCCCCCCCCCCcceeeeeeeeec
Confidence 011 25799999999999999953
No 41
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=1.1e-05 Score=75.22 Aligned_cols=86 Identities=19% Similarity=0.266 Sum_probs=53.7
Q ss_pred CCCcCCCCCCceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhhh
Q 043644 93 GAWPVSKFGQDFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRLL 172 (231)
Q Consensus 93 ~~w~~~~~G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~~ 172 (231)
..|..+.+||+|.++ |.|-|||+-|||+... |+ .+..++|.+
T Consensus 152 ~awa~g~tgknvtta----------imddgvdymhpdlk~n--------yn--aeasydfss------------------ 193 (629)
T KOG3526|consen 152 EAWALGYTGKNVTTA----------IMDDGVDYMHPDLKSN--------YN--AEASYDFSS------------------ 193 (629)
T ss_pred HHHhhcccCCCceEE----------eecCCchhcCcchhcc--------cC--ceeeccccc------------------
Confidence 379999999999999 9999999999998642 21 112223321
Q ss_pred hcCCCCcCCCCCCCC--CCCCchhhhhhhcCCCCCCCceeeecCceeccccC
Q 043644 173 AKFPNITIAMNSAGD--PVGHGTHNSSIAAGSYVEGASYFGYATGIARGTDG 222 (231)
Q Consensus 173 ~~~g~~~~~~~s~~D--~~GHGTHvAgtaAG~~v~~a~~~G~~~g~a~G~ap 222 (231)
+.|.+....+| .+-|||-|||-++.....+. -|+...+-+-||.
T Consensus 194 ----ndpfpyprytddwfnshgtrcagev~aardngi--cgvgvaydskvag 239 (629)
T KOG3526|consen 194 ----NDPFPYPRYTDDWFNSHGTRCAGEVVAARDNGI--CGVGVAYDSKVAG 239 (629)
T ss_pred ----CCCCCCCcccchhhhccCccccceeeeeccCCc--eeeeeeeccccce
Confidence 11112222223 69999999998777664443 3444333344444
No 42
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=96.75 E-value=0.00047 Score=60.99 Aligned_cols=20 Identities=25% Similarity=0.150 Sum_probs=17.8
Q ss_pred CCCCCCCCchhhhhhhcCCC
Q 043644 184 SAGDPVGHGTHNSSIAAGSY 203 (231)
Q Consensus 184 s~~D~~GHGTHvAgtaAG~~ 203 (231)
...|.+||||||||||||+.
T Consensus 32 ~~~~~~~HGThVAgiiag~~ 51 (247)
T cd07488 32 RNNTFDDHATLVASIMGGRD 51 (247)
T ss_pred CCCCCCCHHHHHHHHHHhcc
Confidence 46689999999999999986
No 43
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=0.038 Score=57.16 Aligned_cols=28 Identities=36% Similarity=0.324 Sum_probs=20.7
Q ss_pred CCCCCchhhhhhhcCCCCCCCceeeecC
Q 043644 187 DPVGHGTHNSSIAAGSYVEGASYFGYAT 214 (231)
Q Consensus 187 D~~GHGTHvAgtaAG~~v~~a~~~G~~~ 214 (231)
+..-|||||||||+|+.-...-+.|+|.
T Consensus 308 ~Sg~HGTHVAgIa~anhpe~p~~NGvAP 335 (1304)
T KOG1114|consen 308 VSGPHGTHVAGIAAANHPETPELNGVAP 335 (1304)
T ss_pred cCCCCcceehhhhccCCCCCccccCCCC
Confidence 4567999999999999866544444443
No 44
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=65.71 E-value=4.1 Score=42.86 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.5
Q ss_pred CCCCceEEEEecCcceeeEEeeceeccCccccC
Q 043644 99 KFGQDFIIACQTRHHTFISMLYTGVWPESESYD 131 (231)
Q Consensus 99 ~~G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~ 131 (231)
+.|.||.|| |+||||||.-|-+.
T Consensus 78 YDGRgV~Ia----------IlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 78 YDGRGVTIA----------ILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCceEEE----------EeecCCCCCCCCce
Confidence 569999999 99999999888665
No 45
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=65.18 E-value=10 Score=36.53 Aligned_cols=71 Identities=18% Similarity=0.194 Sum_probs=46.9
Q ss_pred CCCcCCCCCCceEEEEecCcceeeEEeeceeccCccccCCCCCCCCCCCcccccccccccCCcCCCceeeeeeeehhhhh
Q 043644 93 GAWPVSKFGQDFIIACQTRHHTFISMLYTGVWPESESYDDSGMNEIPSRWKGECKTGTQFNSSLCNKKLIGAQIFNRRLL 172 (231)
Q Consensus 93 ~~w~~~~~G~gv~Vg~~~~~~~~~~VIDTGId~~HpdF~~~g~~~~p~~w~g~c~~g~~f~~~~cn~kliGa~~f~~~~~ 172 (231)
..|....+|+++.+. ++|.|+...|++.... + |. .+...+.+.
T Consensus 24 ~~~~~~~~g~~~~~~----------i~ddgl~~~h~~~~~~-~----------~~--------------~~s~d~~~~-- 66 (431)
T KOG3525|consen 24 NAWCKGYTGTRVSVT----------ILDDGLECSHPDLRNN-Y----------DP--------------LGSYDVNRH-- 66 (431)
T ss_pred eccccCCCCCceEEE----------EeeccccccCcccccc-c----------Cc--------------ceeEeeecC--
Confidence 478888899999999 9999999999988643 1 11 111112111
Q ss_pred hcCCCCcCCCCCCCCCCCCchhhhhhhcCCC
Q 043644 173 AKFPNITIAMNSAGDPVGHGTHNSSIAAGSY 203 (231)
Q Consensus 173 ~~~g~~~~~~~s~~D~~GHGTHvAgtaAG~~ 203 (231)
+..+....+..+.+.|||=||+-.+-..
T Consensus 67 ---~~~p~~~~~~~~~~~~g~~Ca~~~a~~~ 94 (431)
T KOG3525|consen 67 ---DNDPEPRCDGTNENKHGTRCAGCVAARA 94 (431)
T ss_pred ---CCCcccccCCCCccccCCCCCccccccc
Confidence 1222333455567999999998877663
No 46
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=30.64 E-value=39 Score=21.42 Aligned_cols=14 Identities=21% Similarity=0.249 Sum_probs=7.7
Q ss_pred CchHHHHHHHHHHH
Q 043644 1 MSWLEAIIGVLRFF 14 (231)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (231)
|+|+...+.+++|+
T Consensus 1 Mk~l~~a~~l~lLa 14 (36)
T PF08194_consen 1 MKCLSLAFALLLLA 14 (36)
T ss_pred CceeHHHHHHHHHH
Confidence 77776644444443
No 47
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=20.78 E-value=73 Score=26.74 Aligned_cols=44 Identities=11% Similarity=-0.040 Sum_probs=28.2
Q ss_pred CeeEEecCcccccccCCCCcccCCCCCCCCCcCCCCCCceEEEEecCcceeeEEeec
Q 043644 65 GYISSLEDLPVKPDTTHSSQFLGLNSKSGAWPVSKFGQDFIIACQTRHHTFISMLYT 121 (231)
Q Consensus 65 ~V~~Vepd~~~~l~tt~s~~~~gl~~~~~~w~~~~~G~gv~Vg~~~~~~~~~~VIDT 121 (231)
+++.|+-+..+++. -|+.-|......+|..-+..-+.+|+ |||+
T Consensus 52 n~k~v~~~g~f~Ln---vwDiGGqr~IRpyWsNYyenvd~lIy----------VIDS 95 (185)
T KOG0074|consen 52 NTKKVEYDGTFHLN---VWDIGGQRGIRPYWSNYYENVDGLIY----------VIDS 95 (185)
T ss_pred ceEEEeecCcEEEE---EEecCCccccchhhhhhhhccceEEE----------EEeC
Confidence 45667777766663 23333333345688766667788899 9995
Done!