Query 043646
Match_columns 625
No_of_seqs 422 out of 3241
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 11:43:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043646.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043646hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hvk_A Probable cysteine desul 100.0 7.5E-38 2.6E-42 331.8 38.3 369 78-530 1-380 (382)
2 3lvm_A Cysteine desulfurase; s 100.0 2.3E-37 7.7E-42 334.0 40.1 385 76-541 21-422 (423)
3 4eb5_A Probable cysteine desul 100.0 9.1E-37 3.1E-41 324.1 37.4 370 79-531 2-381 (382)
4 1kmj_A Selenocysteine lyase; p 100.0 4.3E-36 1.5E-40 321.4 40.5 393 55-522 5-404 (406)
5 3cai_A Possible aminotransfera 100.0 2E-36 6.8E-41 324.8 33.9 370 54-519 12-405 (406)
6 1t3i_A Probable cysteine desul 100.0 2.8E-35 9.7E-40 316.7 40.7 398 52-523 7-413 (420)
7 3e9k_A Kynureninase; kynurenin 100.0 2E-36 6.8E-41 331.4 28.2 370 76-523 66-461 (465)
8 1eg5_A Aminotransferase; PLP-d 100.0 3.4E-34 1.1E-38 304.4 41.0 364 79-523 3-376 (384)
9 3e77_A Phosphoserine aminotran 100.0 4.7E-36 1.6E-40 317.0 24.9 355 77-522 12-374 (377)
10 3vax_A Putative uncharacterize 100.0 1.6E-35 5.4E-40 317.0 27.3 372 71-521 14-398 (400)
11 1elu_A L-cysteine/L-cystine C- 100.0 2.9E-34 9.8E-39 305.8 35.3 372 54-519 3-388 (390)
12 3qm2_A Phosphoserine aminotran 100.0 1.5E-36 5E-41 322.6 16.5 346 78-522 27-384 (386)
13 2dr1_A PH1308 protein, 386AA l 100.0 3.8E-34 1.3E-38 304.4 33.7 368 54-523 6-379 (386)
14 2z9v_A Aspartate aminotransfer 100.0 7E-34 2.4E-38 303.3 31.8 357 76-522 7-370 (392)
15 1qz9_A Kynureninase; kynurenin 100.0 1.9E-33 6.4E-38 302.6 31.8 370 53-523 14-402 (416)
16 3m5u_A Phosphoserine aminotran 100.0 6.7E-34 2.3E-38 299.5 25.2 344 78-522 5-359 (361)
17 3a9z_A Selenocysteine lyase; P 100.0 6.8E-33 2.3E-37 300.0 33.5 374 76-523 17-428 (432)
18 2huf_A Alanine glyoxylate amin 100.0 4.9E-33 1.7E-37 296.9 31.9 355 76-523 17-383 (393)
19 2ch1_A 3-hydroxykynurenine tra 100.0 4E-33 1.4E-37 297.9 30.1 366 77-537 17-394 (396)
20 3nnk_A Ureidoglycine-glyoxylat 100.0 9.4E-33 3.2E-37 296.3 32.3 362 78-523 13-390 (411)
21 1vjo_A Alanine--glyoxylate ami 100.0 6.7E-33 2.3E-37 296.0 30.5 350 77-520 33-392 (393)
22 3zrp_A Serine-pyruvate aminotr 100.0 1.9E-32 6.5E-37 290.8 29.9 346 81-523 5-363 (384)
23 1iug_A Putative aspartate amin 100.0 4E-32 1.4E-36 285.0 32.0 340 80-523 3-348 (352)
24 3ffr_A Phosphoserine aminotran 100.0 7.1E-33 2.4E-37 291.7 26.3 350 80-520 6-361 (362)
25 3kgw_A Alanine-glyoxylate amin 100.0 1.3E-32 4.4E-37 293.1 28.1 356 79-523 24-388 (393)
26 2jis_A Cysteine sulfinic acid 100.0 5E-32 1.7E-36 300.3 33.6 412 35-522 72-514 (515)
27 3isl_A Purine catabolism prote 100.0 4.3E-32 1.5E-36 291.6 31.2 330 117-522 40-389 (416)
28 2qma_A Diaminobutyrate-pyruvat 100.0 3.9E-31 1.3E-35 291.9 37.1 409 46-522 74-495 (497)
29 3k40_A Aromatic-L-amino-acid d 100.0 2.2E-31 7.4E-36 291.9 34.4 417 33-523 34-471 (475)
30 2okj_A Glutamate decarboxylase 100.0 1.9E-30 6.6E-35 286.8 41.4 426 34-522 52-501 (504)
31 2dgk_A GAD-beta, GADB, glutama 100.0 1.3E-30 4.3E-35 284.3 38.9 399 37-525 10-436 (452)
32 2yrr_A Aminotransferase, class 100.0 1.4E-31 5E-36 280.5 28.8 344 81-522 3-352 (353)
33 3f0h_A Aminotransferase; RER07 100.0 4.9E-31 1.7E-35 279.7 32.2 350 79-523 20-374 (376)
34 3f9t_A TDC, L-tyrosine decarbo 100.0 2.6E-30 8.9E-35 275.2 37.3 370 48-521 9-396 (397)
35 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 1E-31 3.6E-36 284.1 26.2 352 76-522 7-369 (371)
36 4e1o_A HDC, histidine decarbox 100.0 2.3E-30 7.7E-35 284.5 36.8 418 33-523 39-478 (481)
37 3vp6_A Glutamate decarboxylase 100.0 8.7E-30 3E-34 281.6 41.1 432 34-523 55-505 (511)
38 1js3_A DDC;, DOPA decarboxylas 100.0 2.1E-30 7.1E-35 285.3 35.5 411 35-523 36-474 (486)
39 3hbx_A GAD 1, glutamate decarb 100.0 7.1E-30 2.4E-34 281.8 39.6 389 44-525 31-446 (502)
40 1m32_A 2-aminoethylphosphonate 100.0 4.6E-30 1.6E-34 270.4 33.1 342 87-521 13-363 (366)
41 2c0r_A PSAT, phosphoserine ami 100.0 2.3E-30 7.8E-35 273.5 28.8 342 78-522 4-360 (362)
42 2z67_A O-phosphoseryl-tRNA(SEC 100.0 2E-31 6.8E-36 291.0 21.2 371 43-519 56-454 (456)
43 2bkw_A Alanine-glyoxylate amin 100.0 1E-29 3.4E-34 270.1 32.3 347 80-522 7-383 (385)
44 1w23_A Phosphoserine aminotran 100.0 6.1E-30 2.1E-34 269.6 23.7 344 79-522 4-359 (360)
45 3ke3_A Putative serine-pyruvat 100.0 1.3E-29 4.4E-34 269.9 24.3 333 104-523 20-376 (379)
46 1wyu_A Glycine dehydrogenase ( 100.0 2.3E-28 7.8E-33 265.4 30.8 313 115-520 102-437 (438)
47 3mc6_A Sphingosine-1-phosphate 100.0 1.8E-28 6.1E-33 270.5 30.2 376 47-524 41-438 (497)
48 3mad_A Sphingosine-1-phosphate 100.0 4.2E-28 1.4E-32 268.8 32.2 373 48-524 75-470 (514)
49 3ffh_A Histidinol-phosphate am 100.0 1.1E-27 3.6E-32 253.0 32.2 324 76-519 32-362 (363)
50 1rv3_A Serine hydroxymethyltra 100.0 8.4E-29 2.9E-33 272.0 22.8 359 78-522 46-430 (483)
51 3dzz_A Putative pyridoxal 5'-p 100.0 8.4E-28 2.9E-32 255.9 29.9 350 67-522 19-388 (391)
52 3nra_A Aspartate aminotransfer 100.0 5.4E-28 1.8E-32 259.0 26.3 345 78-523 41-405 (407)
53 1svv_A Threonine aldolase; str 100.0 2E-28 6.9E-33 257.3 22.0 334 76-522 13-357 (359)
54 2fyf_A PSAT, phosphoserine ami 100.0 5E-28 1.7E-32 259.1 24.9 343 76-522 38-397 (398)
55 3ly1_A Putative histidinol-pho 100.0 2.1E-27 7.1E-32 249.7 29.1 334 69-523 10-352 (354)
56 4dq6_A Putative pyridoxal phos 100.0 2E-27 6.8E-32 253.0 28.7 340 76-520 32-390 (391)
57 3kax_A Aminotransferase, class 100.0 3E-27 1E-31 251.0 28.9 349 67-520 15-382 (383)
58 3euc_A Histidinol-phosphate am 100.0 5.9E-27 2E-31 247.6 30.6 328 76-521 30-366 (367)
59 2bwn_A 5-aminolevulinate synth 100.0 1.7E-27 5.7E-32 255.1 26.5 344 78-522 49-399 (401)
60 3get_A Histidinol-phosphate am 100.0 3.1E-27 1.1E-31 249.6 28.0 323 76-520 30-364 (365)
61 1j32_A Aspartate aminotransfer 100.0 5E-27 1.7E-31 250.1 29.5 342 77-522 31-386 (388)
62 2w8t_A SPT, serine palmitoyltr 100.0 1.7E-26 5.7E-31 249.8 32.1 325 88-523 78-415 (427)
63 1wyu_B Glycine dehydrogenase s 100.0 2.5E-26 8.6E-31 251.8 32.9 394 36-522 33-440 (474)
64 3tqx_A 2-amino-3-ketobutyrate 100.0 2.6E-27 9E-32 252.8 23.2 341 79-523 44-396 (399)
65 1o4s_A Aspartate aminotransfer 100.0 1.7E-26 5.8E-31 246.5 29.4 334 76-521 41-387 (389)
66 3p1t_A Putative histidinol-pho 100.0 1.6E-26 5.6E-31 241.0 28.6 316 76-521 16-335 (337)
67 1fc4_A 2-amino-3-ketobutyrate 100.0 1.1E-26 3.9E-31 248.4 26.9 336 79-523 46-397 (401)
68 1gd9_A Aspartate aminotransfer 100.0 8.3E-27 2.8E-31 248.5 25.6 342 77-522 27-385 (389)
69 2fnu_A Aminotransferase; prote 100.0 2.1E-26 7.2E-31 243.7 28.4 354 86-522 8-371 (375)
70 3a2b_A Serine palmitoyltransfe 100.0 1.2E-26 4.2E-31 248.1 26.5 339 77-522 44-391 (398)
71 1bw0_A TAT, protein (tyrosine 100.0 8.7E-26 3E-30 242.9 32.6 347 76-523 33-413 (416)
72 3dyd_A Tyrosine aminotransfera 99.9 5.5E-26 1.9E-30 245.7 30.2 349 76-523 54-424 (427)
73 1c7n_A Cystalysin; transferase 99.9 3.4E-26 1.2E-30 244.6 27.0 344 77-523 32-393 (399)
74 1b5p_A Protein (aspartate amin 99.9 2.7E-26 9.1E-31 244.6 25.0 338 77-520 32-382 (385)
75 2vi8_A Serine hydroxymethyltra 99.9 2E-26 6.8E-31 246.6 23.9 347 80-522 26-386 (405)
76 3l8a_A METC, putative aminotra 99.9 4.3E-26 1.5E-30 246.0 26.7 331 87-521 73-420 (421)
77 1xi9_A Putative transaminase; 99.9 8.6E-26 2.9E-30 242.3 28.2 343 76-522 38-402 (406)
78 3ftb_A Histidinol-phosphate am 99.9 1.3E-25 4.4E-30 236.5 29.0 325 76-522 26-360 (361)
79 2zc0_A Alanine glyoxylate tran 99.9 5.8E-26 2E-30 243.5 26.7 338 89-523 50-404 (407)
80 3kki_A CAI-1 autoinducer synth 99.9 3E-25 1E-29 238.3 32.1 344 67-522 51-403 (409)
81 1v2d_A Glutamine aminotransfer 99.9 3.4E-26 1.2E-30 243.2 24.3 332 78-523 27-371 (381)
82 3g0t_A Putative aminotransfera 99.9 2.4E-25 8.3E-30 240.9 31.3 356 77-522 45-436 (437)
83 3h14_A Aminotransferase, class 99.9 2.1E-25 7.1E-30 237.9 30.3 339 76-522 31-381 (391)
84 1bs0_A Protein (8-amino-7-oxon 99.9 2E-25 6.9E-30 237.3 30.0 333 78-519 39-383 (384)
85 1d2f_A MALY protein; aminotran 99.9 1.9E-25 6.4E-30 238.2 29.6 340 76-522 28-388 (390)
86 2zyj_A Alpha-aminodipate amino 99.9 1.1E-25 3.8E-30 240.7 27.7 342 77-523 33-393 (397)
87 2z61_A Probable aspartate amin 99.9 3.7E-26 1.3E-30 241.9 23.7 331 76-521 29-369 (370)
88 1v72_A Aldolase; PLP-dependent 99.9 3.6E-26 1.2E-30 240.0 23.3 329 76-522 7-352 (356)
89 1u08_A Hypothetical aminotrans 99.9 6.7E-26 2.3E-30 241.3 25.5 342 77-518 31-385 (386)
90 2x5d_A Probable aminotransfera 99.9 2E-25 6.9E-30 239.9 29.5 349 77-525 38-400 (412)
91 2cb1_A O-acetyl homoserine sul 99.9 2E-25 7E-30 240.2 28.9 354 78-518 23-411 (412)
92 3fdb_A Beta C-S lyase, putativ 99.9 1.4E-25 4.9E-30 237.6 27.1 345 68-522 16-375 (377)
93 2o0r_A RV0858C (N-succinyldiam 99.9 9.1E-26 3.1E-30 242.6 25.3 351 77-522 26-395 (411)
94 3frk_A QDTB; aminotransferase, 99.9 1.6E-26 5.6E-31 245.0 19.1 342 90-522 16-367 (373)
95 3hdo_A Histidinol-phosphate am 99.9 1.4E-25 4.8E-30 236.6 26.2 322 76-523 26-355 (360)
96 2rfv_A Methionine gamma-lyase; 99.9 8.4E-26 2.9E-30 242.0 24.8 198 77-315 26-229 (398)
97 1yiz_A Kynurenine aminotransfe 99.9 1E-25 3.5E-30 243.5 25.3 362 77-521 38-427 (429)
98 3ele_A Amino transferase; RER0 99.9 2.4E-25 8.4E-30 237.9 27.1 341 76-523 35-396 (398)
99 1gc0_A Methionine gamma-lyase; 99.9 1.6E-25 5.6E-30 239.8 25.1 339 78-519 28-397 (398)
100 2dou_A Probable N-succinyldiam 99.9 2.2E-25 7.6E-30 236.4 25.3 338 77-520 26-375 (376)
101 3cq5_A Histidinol-phosphate am 99.9 1.8E-24 6.2E-29 229.0 32.0 328 79-521 33-366 (369)
102 1pff_A Methionine gamma-lyase; 99.9 3.1E-26 1.1E-30 238.7 18.1 299 125-519 2-330 (331)
103 1lc5_A COBD, L-threonine-O-3-p 99.9 8.1E-25 2.8E-29 231.1 29.1 324 77-522 25-359 (364)
104 1o69_A Aminotransferase; struc 99.9 9E-25 3.1E-29 233.6 29.3 364 90-523 11-387 (394)
105 2o1b_A Aminotransferase, class 99.9 8.2E-26 2.8E-30 242.5 21.1 343 77-522 48-402 (404)
106 3uwc_A Nucleotide-sugar aminot 99.9 9.6E-26 3.3E-30 238.8 20.9 353 80-522 8-370 (374)
107 2c81_A Glutamine-2-deoxy-scyll 99.9 3.7E-25 1.3E-29 238.4 25.1 364 87-522 12-413 (418)
108 2dkj_A Serine hydroxymethyltra 99.9 1E-25 3.4E-30 241.3 20.4 339 87-522 33-387 (407)
109 3jtx_A Aminotransferase; NP_28 99.9 1.3E-24 4.3E-29 232.0 28.9 345 76-520 30-395 (396)
110 1iay_A ACC synthase 2, 1-amino 99.9 7.6E-25 2.6E-29 236.6 27.3 352 76-522 36-426 (428)
111 2gb3_A Aspartate aminotransfer 99.9 5.8E-25 2E-29 236.2 26.2 340 76-523 43-402 (409)
112 3aow_A Putative uncharacterize 99.9 1.6E-24 5.6E-29 235.7 29.9 338 89-523 92-445 (448)
113 1b9h_A AHBA synthase, protein 99.9 5.5E-25 1.9E-29 234.4 25.3 349 90-522 16-387 (388)
114 1vp4_A Aminotransferase, putat 99.9 4.6E-25 1.6E-29 238.3 24.7 341 89-525 59-420 (425)
115 3b8x_A WBDK, pyridoxamine 5-ph 99.9 2.2E-24 7.5E-29 230.1 29.5 359 87-517 11-390 (390)
116 3n0l_A Serine hydroxymethyltra 99.9 6.7E-25 2.3E-29 235.7 25.2 342 87-522 35-388 (417)
117 3fvs_A Kynurenine--oxoglutarat 99.9 7.5E-25 2.6E-29 235.9 25.5 362 77-522 29-421 (422)
118 1mdo_A ARNB aminotransferase; 99.9 1.6E-24 5.4E-29 231.0 27.8 350 89-522 18-385 (393)
119 3e2y_A Kynurenine-oxoglutarate 99.9 5.8E-25 2E-29 235.8 23.5 357 76-518 23-408 (410)
120 1fg7_A Histidinol phosphate am 99.9 2.2E-24 7.7E-29 227.3 27.5 286 123-519 60-354 (356)
121 1qgn_A Protein (cystathionine 99.9 6.9E-24 2.3E-28 229.6 31.5 310 115-521 108-443 (445)
122 3op7_A Aminotransferase class 99.9 2E-24 6.7E-29 228.9 26.0 297 124-523 66-371 (375)
123 3ezs_A Aminotransferase ASPB; 99.9 2E-24 6.8E-29 228.9 25.6 332 78-522 25-374 (376)
124 1e5e_A MGL, methionine gamma-l 99.9 1.8E-24 6.1E-29 232.2 25.2 161 120-315 61-228 (404)
125 3piu_A 1-aminocyclopropane-1-c 99.9 4.6E-24 1.6E-28 231.1 28.6 360 77-523 39-432 (435)
126 3gbx_A Serine hydroxymethyltra 99.9 8.4E-25 2.9E-29 235.0 21.7 341 88-522 41-395 (420)
127 2oga_A Transaminase; PLP-depen 99.9 7.5E-25 2.6E-29 234.6 20.7 351 79-522 31-395 (399)
128 2x3l_A ORN/Lys/Arg decarboxyla 99.9 7.5E-25 2.6E-29 238.1 20.8 283 121-523 57-353 (446)
129 3dr4_A Putative perosamine syn 99.9 6.2E-25 2.1E-29 234.4 19.8 346 89-519 34-389 (391)
130 3fkd_A L-threonine-O-3-phospha 99.9 7.6E-24 2.6E-28 222.3 27.6 320 76-522 15-341 (350)
131 2r2n_A Kynurenine/alpha-aminoa 99.9 1.2E-23 3.9E-28 227.3 27.9 312 120-522 81-423 (425)
132 1cs1_A CGS, protein (cystathio 99.9 8.9E-23 3E-27 217.5 33.5 304 120-520 51-384 (386)
133 3if2_A Aminotransferase; YP_26 99.9 1.9E-24 6.5E-29 234.6 20.3 360 77-523 32-440 (444)
134 1jg8_A L-ALLO-threonine aldola 99.9 1E-24 3.5E-29 228.5 17.5 328 76-522 3-345 (347)
135 3qgu_A LL-diaminopimelate amin 99.9 1.9E-23 6.4E-28 227.1 27.9 343 76-522 69-439 (449)
136 2a7v_A Serine hydroxymethyltra 99.9 6.9E-24 2.4E-28 231.5 23.9 359 86-523 63-441 (490)
137 3nyt_A Aminotransferase WBPE; 99.9 1.5E-24 5.1E-29 229.6 17.9 351 80-519 4-360 (367)
138 3cog_A Cystathionine gamma-lya 99.9 4.5E-24 1.5E-28 229.0 21.6 159 121-315 67-233 (403)
139 2fq6_A Cystathionine beta-lyas 99.9 1.1E-23 3.7E-28 226.5 23.7 335 78-518 47-413 (415)
140 1vef_A Acetylornithine/acetyl- 99.9 4.7E-23 1.6E-27 220.0 27.9 318 78-520 45-394 (395)
141 2eh6_A Acoat, acetylornithine 99.9 5.1E-23 1.7E-27 217.9 27.9 316 78-519 28-374 (375)
142 3b46_A Aminotransferase BNA3; 99.9 1.7E-23 5.8E-28 227.6 24.7 346 89-518 71-442 (447)
143 2ctz_A O-acetyl-L-homoserine s 99.9 1E-23 3.4E-28 227.6 22.2 328 120-519 57-419 (421)
144 3tcm_A Alanine aminotransferas 99.9 8.9E-23 3.1E-27 225.0 30.0 349 89-523 107-494 (500)
145 1c4k_A Protein (ornithine deca 99.9 2E-23 6.8E-28 237.7 25.5 320 122-523 174-566 (730)
146 3ruy_A Ornithine aminotransfer 99.9 2.5E-22 8.4E-27 214.2 31.6 325 78-520 36-391 (392)
147 3ei9_A LL-diaminopimelate amin 99.9 2.5E-23 8.5E-28 225.0 23.3 344 76-522 56-427 (432)
148 3qhx_A Cystathionine gamma-syn 99.9 1.5E-22 5E-27 216.4 28.9 308 115-516 60-391 (392)
149 2vyc_A Biodegradative arginine 99.9 7.6E-23 2.6E-27 234.9 28.3 316 121-523 205-605 (755)
150 3ihj_A Alanine aminotransferas 99.9 1.2E-22 4E-27 223.8 28.6 325 118-524 130-494 (498)
151 3ju7_A Putative PLP-dependent 99.9 1.9E-23 6.4E-28 222.1 21.5 351 87-522 12-374 (377)
152 3ecd_A Serine hydroxymethyltra 99.9 2.2E-23 7.5E-28 224.3 21.2 343 87-523 42-397 (425)
153 1n8p_A Cystathionine gamma-lya 99.9 4.2E-23 1.4E-27 220.7 23.0 306 119-519 53-391 (393)
154 2x5f_A Aspartate_tyrosine_phen 99.9 3.3E-23 1.1E-27 224.0 22.2 298 124-522 91-428 (430)
155 3asa_A LL-diaminopimelate amin 99.9 3.8E-23 1.3E-27 221.3 22.5 346 76-522 33-392 (400)
156 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 6.7E-23 2.3E-27 222.2 24.5 368 88-521 40-434 (437)
157 3ez1_A Aminotransferase MOCR f 99.9 1.5E-22 5E-27 218.2 26.7 307 123-523 72-415 (423)
158 3h7f_A Serine hydroxymethyltra 99.9 1.5E-22 5.1E-27 220.2 26.7 343 87-523 55-414 (447)
159 3ppl_A Aspartate aminotransfer 99.9 8.9E-23 3.1E-27 220.4 24.7 304 123-523 80-420 (427)
160 2po3_A 4-dehydrase; external a 99.9 3.2E-22 1.1E-26 215.8 27.8 348 89-523 30-386 (424)
161 3acz_A Methionine gamma-lyase; 99.9 5.3E-22 1.8E-26 211.9 29.1 162 119-315 57-225 (389)
162 1uu1_A Histidinol-phosphate am 99.9 6.5E-23 2.2E-27 214.1 21.4 308 77-519 20-334 (335)
163 1ibj_A CBL, cystathionine beta 99.9 6.8E-23 2.3E-27 223.4 22.1 307 121-523 133-462 (464)
164 3g7q_A Valine-pyruvate aminotr 99.9 4.6E-23 1.6E-27 221.4 19.4 309 120-523 78-413 (417)
165 3rq1_A Aminotransferase class 99.9 5.2E-22 1.8E-26 213.6 27.3 337 80-523 48-415 (418)
166 3ndn_A O-succinylhomoserine su 99.9 1.5E-21 5.3E-26 209.8 30.5 314 116-519 76-412 (414)
167 1s0a_A Adenosylmethionine-8-am 99.9 1.3E-21 4.3E-26 211.5 29.8 339 78-523 43-424 (429)
168 2ord_A Acoat, acetylornithine 99.9 6.4E-22 2.2E-26 211.4 27.2 327 78-522 40-396 (397)
169 3d6k_A Putative aminotransfera 99.9 7.7E-22 2.6E-26 212.8 25.5 304 123-523 78-418 (422)
170 2ez2_A Beta-tyrosinase, tyrosi 99.9 1.8E-21 6.1E-26 211.9 28.3 385 36-524 6-432 (456)
171 1ax4_A Tryptophanase; tryptoph 99.9 1.3E-22 4.5E-27 221.5 18.1 386 46-523 17-441 (467)
172 3ri6_A O-acetylhomoserine sulf 99.9 1.3E-21 4.4E-26 211.1 24.8 326 115-520 76-429 (430)
173 3f6t_A Aspartate aminotransfer 99.9 8.7E-22 3E-26 218.7 23.4 361 89-524 116-526 (533)
174 3b1d_A Betac-S lyase; HET: PLP 99.8 1.3E-24 4.6E-29 231.9 0.0 331 88-521 44-391 (392)
175 1sff_A 4-aminobutyrate aminotr 99.9 2.4E-20 8.2E-25 200.9 32.5 343 79-522 42-423 (426)
176 7aat_A Aspartate aminotransfer 99.9 5.9E-22 2E-26 211.9 19.3 207 79-311 37-264 (401)
177 2pb2_A Acetylornithine/succiny 99.9 1.5E-20 5E-25 202.7 30.0 331 78-522 57-417 (420)
178 3fsl_A Aromatic-amino-acid ami 99.9 5.9E-22 2E-26 211.4 18.8 329 79-519 35-396 (397)
179 3t18_A Aminotransferase class 99.9 2.3E-21 7.8E-26 208.2 23.2 334 80-522 47-409 (413)
180 4adb_A Succinylornithine trans 99.9 1.4E-20 4.9E-25 201.2 28.9 330 78-523 39-400 (406)
181 4f4e_A Aromatic-amino-acid ami 99.9 7.9E-22 2.7E-26 212.5 18.9 332 79-520 58-419 (420)
182 2aeu_A Hypothetical protein MJ 99.9 1.4E-21 4.9E-26 207.4 20.5 177 86-315 39-224 (374)
183 3pj0_A LMO0305 protein; struct 99.9 1.2E-21 4.1E-26 206.0 19.4 295 121-519 48-358 (359)
184 3meb_A Aspartate aminotransfer 99.9 4.3E-21 1.5E-25 208.7 24.4 330 79-522 58-443 (448)
185 1yaa_A Aspartate aminotransfer 99.9 5.1E-22 1.7E-26 213.3 16.6 326 79-522 38-410 (412)
186 2eo5_A 419AA long hypothetical 99.9 8.3E-20 2.8E-24 196.7 33.8 330 78-522 42-417 (419)
187 2oqx_A Tryptophanase; lyase, p 99.9 1.6E-21 5.4E-26 212.9 19.9 392 37-523 6-442 (467)
188 3nx3_A Acoat, acetylornithine 99.9 4.7E-20 1.6E-24 196.8 30.7 328 79-522 37-394 (395)
189 3nmy_A Xometc, cystathionine g 99.9 3.2E-20 1.1E-24 198.5 27.3 310 116-517 62-397 (400)
190 3bwn_A AT1G70560, L-tryptophan 99.9 1.5E-21 5.1E-26 208.5 16.5 287 124-522 71-386 (391)
191 3dxv_A Alpha-amino-epsilon-cap 99.9 1.1E-19 3.7E-24 196.8 29.7 349 78-525 43-427 (439)
192 2ay1_A Aroat, aromatic amino a 99.9 2.9E-21 9.8E-26 205.9 17.0 329 80-519 36-392 (394)
193 3lws_A Aromatic amino acid bet 99.9 8.4E-21 2.9E-25 199.5 20.0 292 122-519 48-355 (357)
194 1ajs_A Aspartate aminotransfer 99.9 1.3E-20 4.4E-25 202.2 21.5 333 80-522 40-410 (412)
195 2oat_A Ornithine aminotransfer 99.9 4.8E-19 1.6E-23 192.0 33.5 334 78-522 76-438 (439)
196 2q7w_A Aspartate aminotransfer 99.9 2.8E-21 9.6E-26 206.1 15.6 327 80-519 36-395 (396)
197 3n5m_A Adenosylmethionine-8-am 99.8 2E-18 6.8E-23 187.8 35.6 358 79-522 50-451 (452)
198 1z7d_A Ornithine aminotransfer 99.8 1.7E-18 6E-23 187.2 34.8 333 78-523 65-429 (433)
199 3a8u_X Omega-amino acid--pyruv 99.8 7.6E-19 2.6E-23 190.8 30.4 353 78-522 50-446 (449)
200 3i4j_A Aminotransferase, class 99.8 2.2E-19 7.7E-24 193.9 24.7 362 79-522 30-427 (430)
201 3bc8_A O-phosphoseryl-tRNA(SEC 99.8 9.1E-21 3.1E-25 202.4 13.0 247 115-406 92-348 (450)
202 2cjg_A L-lysine-epsilon aminot 99.8 3E-19 1E-23 194.1 24.9 343 78-522 54-447 (449)
203 3tfu_A Adenosylmethionine-8-am 99.8 1.5E-18 5.3E-23 188.9 29.8 340 79-523 76-453 (457)
204 3gju_A Putative aminotransfera 99.8 3E-18 1E-22 186.9 31.7 354 79-523 52-456 (460)
205 1zod_A DGD, 2,2-dialkylglycine 99.8 1.5E-18 5.2E-23 187.4 28.8 348 78-522 43-431 (433)
206 3oks_A 4-aminobutyrate transam 99.8 3.9E-18 1.3E-22 185.4 31.1 347 78-522 61-450 (451)
207 3dod_A Adenosylmethionine-8-am 99.8 1E-17 3.5E-22 182.0 34.0 359 66-523 35-443 (448)
208 3n75_A LDC, lysine decarboxyla 99.8 1.6E-18 5.6E-23 195.7 28.2 312 121-522 195-559 (715)
209 4ffc_A 4-aminobutyrate aminotr 99.8 6.9E-18 2.3E-22 183.6 30.6 347 78-523 64-449 (453)
210 4a6r_A Omega transaminase; tra 99.8 5.1E-18 1.7E-22 185.0 29.1 362 66-524 41-450 (459)
211 3hvy_A Cystathionine beta-lyas 99.8 5.1E-19 1.8E-23 190.0 20.7 192 91-315 47-263 (427)
212 3jzl_A Putative cystathionine 99.8 6E-19 2.1E-23 188.8 20.6 193 91-315 32-246 (409)
213 3i16_A Aluminum resistance pro 99.8 1.7E-18 5.7E-23 186.0 22.8 195 91-316 46-264 (427)
214 3hmu_A Aminotransferase, class 99.8 1.5E-17 5E-22 181.9 30.6 349 78-523 55-452 (472)
215 4eu1_A Mitochondrial aspartate 99.8 1.2E-18 4.2E-23 186.7 21.2 294 124-520 82-408 (409)
216 3i5t_A Aminotransferase; pyrid 99.8 1.2E-17 4E-22 183.0 29.0 357 79-527 55-458 (476)
217 2zy4_A L-aspartate beta-decarb 99.8 2.6E-18 8.7E-23 191.0 21.6 363 87-523 115-522 (546)
218 3l44_A Glutamate-1-semialdehyd 99.8 1.9E-17 6.6E-22 178.9 27.9 336 78-523 55-430 (434)
219 2hox_A ALLIIN lyase 1; cystein 99.8 1.2E-18 4E-23 188.3 17.3 339 77-522 57-424 (427)
220 3k28_A Glutamate-1-semialdehyd 99.8 1.1E-17 3.7E-22 180.6 23.5 337 78-522 53-426 (429)
221 1ohv_A 4-aminobutyrate aminotr 99.8 2.5E-17 8.4E-22 180.2 25.5 349 78-522 63-470 (472)
222 3fq8_A Glutamate-1-semialdehyd 99.8 2.9E-17 9.9E-22 177.1 24.4 202 78-315 52-284 (427)
223 4e77_A Glutamate-1-semialdehyd 99.8 1.4E-16 4.8E-21 171.9 29.0 201 78-315 53-285 (429)
224 3ht4_A Aluminum resistance pro 99.8 4.4E-18 1.5E-22 183.5 16.3 193 91-315 38-252 (431)
225 3k7y_A Aspartate aminotransfer 99.8 1.5E-17 5E-22 178.1 20.2 326 87-522 46-404 (405)
226 2epj_A Glutamate-1-semialdehyd 99.8 5.7E-17 2E-21 175.2 24.9 337 78-522 56-430 (434)
227 2cy8_A D-phgat, D-phenylglycin 99.7 2.7E-16 9.2E-21 171.0 27.5 335 79-523 58-435 (453)
228 3hl2_A O-phosphoseryl-tRNA(SEC 99.7 6.5E-17 2.2E-21 170.3 17.4 326 125-524 121-462 (501)
229 3ou5_A Serine hydroxymethyltra 99.7 5.1E-16 1.7E-20 162.8 23.5 353 88-523 65-441 (490)
230 2e7u_A Glutamate-1-semialdehyd 99.7 4.4E-16 1.5E-20 167.7 22.9 333 79-519 53-423 (424)
231 4h51_A Aspartate aminotransfer 99.7 1.6E-15 5.4E-20 162.6 20.3 340 79-524 53-418 (420)
232 4ao9_A Beta-phenylalanine amin 99.6 3.7E-14 1.3E-18 152.8 24.4 338 78-529 87-452 (454)
233 4atq_A 4-aminobutyrate transam 99.6 3.8E-13 1.3E-17 145.5 30.6 373 52-522 28-454 (456)
234 2yky_A Beta-transaminase; tran 99.4 1.1E-16 3.9E-21 173.5 0.0 344 79-527 101-464 (465)
235 4e3q_A Pyruvate transaminase; 99.5 1.4E-11 4.7E-16 133.8 33.2 361 64-524 56-469 (473)
236 4a0g_A Adenosylmethionine-8-am 99.4 1.8E-11 6.1E-16 141.6 20.1 359 79-523 381-828 (831)
237 2yxb_A Coenzyme B12-dependent 35.5 1.3E+02 0.0045 26.4 8.3 63 198-270 42-107 (161)
238 1y80_A Predicted cobalamin bin 32.8 2.1E+02 0.0071 26.1 9.6 65 198-272 112-180 (210)
239 3o2i_A Uncharacterized protein 32.3 74 0.0025 25.3 5.1 25 493-517 93-117 (125)
240 4gqr_A Pancreatic alpha-amylas 28.3 29 0.00098 36.5 2.9 30 242-271 69-98 (496)
241 2exn_A Hypothetical protein BO 27.6 17 0.00058 31.4 0.8 20 528-555 3-28 (136)
242 3keo_A Redox-sensing transcrip 25.0 88 0.003 29.1 5.3 114 123-273 68-182 (212)
243 3ezx_A MMCP 1, monomethylamine 24.9 4.1E+02 0.014 24.4 11.1 64 198-271 116-185 (215)
244 3ss7_X D-serine dehydratase; t 24.5 4.3E+02 0.015 27.2 11.3 52 141-210 162-214 (442)
245 3dm5_A SRP54, signal recogniti 23.7 3.9E+02 0.013 27.7 10.6 30 496-525 399-428 (443)
246 1lwj_A 4-alpha-glucanotransfer 23.7 43 0.0015 34.9 3.2 33 239-271 59-91 (441)
247 1g94_A Alpha-amylase; beta-alp 23.7 38 0.0013 35.5 2.8 31 241-271 56-86 (448)
248 1ccw_A Protein (glutamate muta 23.4 1.2E+02 0.004 25.9 5.5 65 198-272 27-94 (137)
249 3kts_A Glycerol uptake operon 23.3 54 0.0018 30.1 3.3 50 217-276 18-69 (192)
250 2kxh_B Peptide of FAR upstream 23.1 57 0.002 20.1 2.3 22 585-606 6-27 (31)
251 3bh4_A Alpha-amylase; calcium, 22.4 45 0.0016 35.2 3.1 30 242-271 71-100 (483)
252 1wpc_A Glucan 1,4-alpha-maltoh 21.5 49 0.0017 35.0 3.1 30 242-271 75-104 (485)
253 4aie_A Glucan 1,6-alpha-glucos 21.4 50 0.0017 35.3 3.2 34 238-271 68-101 (549)
254 1ud2_A Amylase, alpha-amylase; 21.3 49 0.0017 34.9 3.1 30 242-271 73-102 (480)
255 1hvx_A Alpha-amylase; hydrolas 21.2 50 0.0017 35.3 3.1 30 242-271 74-103 (515)
256 3io5_A Recombination and repai 21.1 6.1E+02 0.021 25.1 11.1 83 179-268 58-167 (333)
257 1mxg_A Alpha amylase; hyperthe 21.0 51 0.0018 34.3 3.1 30 242-271 79-108 (435)
258 3i6i_A Putative leucoanthocyan 20.8 5.1E+02 0.017 25.1 10.7 54 200-266 59-114 (346)
259 2guy_A Alpha-amylase A; (beta- 20.6 54 0.0019 34.5 3.3 36 236-271 84-119 (478)
260 4h27_A L-serine dehydratase/L- 20.5 4.3E+02 0.015 26.4 10.0 52 141-210 95-147 (364)
No 1
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=100.00 E-value=7.5e-38 Score=331.81 Aligned_cols=369 Identities=20% Similarity=0.275 Sum_probs=286.2
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQ 157 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (625)
.+|||+++.+++|+.+.+++.+.+...++||+. .+..+....+.++++++++++++|++++ ++++| +|+++++..++
T Consensus 1 ~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~-~i~~~-~g~~~a~~~~~ 77 (382)
T 4hvk_A 1 MAYFDYTSAKPVDERILEAMLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGG-TVVFT-SGATEANNLAI 77 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTC-SSHHHHHHHHHHHHHHHHHHHHTTCTTE-EEEEE-SSHHHHHHHHH
T ss_pred CEeecCCCcCCCCHHHHHHHHHHHHhhcCCCcc-cchHHHHHHHHHHHHHHHHHHHcCCCcC-eEEEE-CCchHHHHHHH
Confidence 379999999999999999999999888888887 3566777888999999999999999765 79998 78888888888
Q ss_pred HHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH---cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 158 EVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ---SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~---~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
.++... ..++||+ |+++..+|+++...+.. .|++++.+++++++.+|+++|+++++ +++
T Consensus 78 ~~~~~~-----------~~~~gd~--vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-----~~~ 139 (382)
T 4hvk_A 78 IGYAMR-----------NARKGKH--ILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLR-----DDT 139 (382)
T ss_dssp HHHHHH-----------HGGGCCE--EEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCC-----TTE
T ss_pred HHhhhh-----------hcCCCCE--EEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhc-----cCc
Confidence 776210 0167885 99999999999877655 59999999999888999999999997 579
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecc
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKA 314 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~ 314 (625)
++|++++++||||.+.|+++|.++|++||+ +|+|++|+.+..++++... ++|++++|+||++| |.|+|+++++++
T Consensus 140 ~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~g-~~g~g~~~~~~~ 214 (382)
T 4hvk_A 140 ILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVDVEKI---GADMLTISSNDIYG-PKGVGALWIRKE 214 (382)
T ss_dssp EEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCHHHH---TCSEEEEESGGGTS-CTTCEEEEEETT
T ss_pred eEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCchhc---CCCEEEEeHHHhcC-CCceEEEEEcCc
Confidence 999999999999999999999999999999 9999999998888777655 78999999999865 777999999987
Q ss_pred ccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 043646 315 LYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVYIESAL 392 (625)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~l~ 392 (625)
. .+.+...+++. ..++..++++..++.. +++.+. ..+.+.+.++.+++++++.
T Consensus 215 ~----~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~al~~~---~~~~~~~~~~~~~~~~~l~ 269 (382)
T 4hvk_A 215 A----KLQPVILGGGQ------------------ENGLRSGSENVPSIVGFGKAAEIT---AMEWREEAERLRRLRDRII 269 (382)
T ss_dssp C----CCCCSSCSSCT------------------GGGTSCSCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred c----CcCcccccCCC------------------cCccccCCcCHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHH
Confidence 5 24455444432 3455677877766543 334433 2356788899999999999
Q ss_pred HhhCCCCcEEEeCCCCCCCcc-eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhh---H-
Q 043646 393 GRILPNQNIQVLGNTSVKRQA-ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYG---H- 467 (625)
Q Consensus 393 ~~L~~l~gv~v~~~~~~~~~~-i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~---~- 467 (625)
+.|.++|+++++.+. ..+.+ ++.|.+. + .+..++.+.|.+ +||.+++|..|..+.. +
T Consensus 270 ~~L~~~~~~~~~~~~-~~~~~~~~~~~~~-~---------------~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~~~ 331 (382)
T 4hvk_A 270 DNVLKIEESYLNGHP-EKRLPNNVNVRFS-Y---------------IEGESIVLSLDM-AGIQASTGSACSSKTLQPSHV 331 (382)
T ss_dssp HHHTTSTTEEECSCS-SSBCTTEEEEEET-T---------------CCHHHHHHHHHH-TTCBCBCC--------CCCHH
T ss_pred HHHhcCCCeEEeCCc-cccCCCEEEEEEC-C---------------CCHHHHHHHHHH-CCEEEeeCCccCCCCCcchHH
Confidence 999999999998764 23333 6666553 2 246788888855 7999999998874321 1
Q ss_pred -hhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhhcccCc
Q 043646 468 -TLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHRFLPLY 530 (625)
Q Consensus 468 -~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~~~~~y 530 (625)
..+++++.. .++++||+++.++|++|+++++++|++++.+..++.|++
T Consensus 332 ~~~~g~~~~~---------------~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~~~~~~ 380 (382)
T 4hvk_A 332 LMACGLKHEE---------------AHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRSMSPLY 380 (382)
T ss_dssp HHHTTCCHHH---------------HHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred HHHcCCChhh---------------cCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 111221110 148999999999999999999999999998887766655
No 2
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=100.00 E-value=2.3e-37 Score=333.99 Aligned_cols=385 Identities=18% Similarity=0.245 Sum_probs=293.7
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhC--CCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHH
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVL--PFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAI 153 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~--~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal 153 (625)
+..+|||+++.++.|+.|.+++.+.+. ..+++|+...+..+....+.++++++++++++|++++ +|+|| +|+++++
T Consensus 21 ~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~v~~~-~ggt~a~ 98 (423)
T 3lvm_A 21 KLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR-EIVFT-SGATESD 98 (423)
T ss_dssp CSSEECBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG-GEEEE-SSHHHHH
T ss_pred CCCEeecCCCcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCC-eEEEe-CChHHHH
Confidence 568999999999999999999999887 7788888744566777788999999999999999766 89998 6777778
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH---cCCeEEEEecCCCCCCCHHHHHHHHHHhhh
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ---SLAEVVEIGLDDNGLLDIEALRSQLELYKA 230 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~---~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~ 230 (625)
..++.++... ..++||+ |+++..+|+++...+.. .|++++.++.+.++.+|+++|+++++
T Consensus 99 ~~a~~~l~~~-----------~~~~gd~--Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~---- 161 (423)
T 3lvm_A 99 NLAIKGAANF-----------YQKKGKH--IITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMR---- 161 (423)
T ss_dssp HHHHHHHHHH-----------HTTTCCE--EEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCC----
T ss_pred HHHHHHHHHh-----------hccCCCE--EEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcC----
Confidence 7777765200 0136775 99999999999877744 49999999999889999999999997
Q ss_pred CCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEE
Q 043646 231 AKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILL 310 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~ 310 (625)
+++++|++++++||||.+.|+++|.++|++||+++|+|++++.+..++++... ++|++++|+||++| |.|+|+++
T Consensus 162 -~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~---~~di~~~s~sK~~g-~~g~G~~~ 236 (423)
T 3lvm_A 162 -DDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQL---KVDLMSFSGHKIYG-PKGIGALY 236 (423)
T ss_dssp -TTEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTS---CCSEEEEESTTTTS-CSSCEEEE
T ss_pred -CCcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhc---CCCEEEechHHhcC-CCCeEEEE
Confidence 57899999999999999999999999999999999999999998887777766 78999999999765 66799999
Q ss_pred EeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHH
Q 043646 311 ISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVYI 388 (625)
Q Consensus 311 v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~ 388 (625)
++++. ...+.+...+++. ...+..++++...... +++.++. .. .+.+.++.+.++
T Consensus 237 ~~~~~--~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~a~~~al~~~~--~~-~~~~~~~~~~~~ 293 (423)
T 3lvm_A 237 VRRKP--RVRIEAQMHGGGH------------------ERGMRSGTLPVHQIVGMGEAYRIAK--EE-MATEMERLRGLR 293 (423)
T ss_dssp ECBTT--BCCCCCSSCSSCT------------------TTTTCCSCCCHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHH
T ss_pred Eeccc--cCCCCccccCCcc------------------cccccCCCCCHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHH
Confidence 99887 4455555554433 2334566766665543 3444432 22 678888999999
Q ss_pred HHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCch----
Q 043646 389 ESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP---- 464 (625)
Q Consensus 389 ~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~---- 464 (625)
+++.+.|.++|+++++.+.......++.|.+ +. .+..++.+.|.+ |.+++|.+|...
T Consensus 294 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~l~~~l~~---i~v~~g~~~~~~~~~~ 354 (423)
T 3lvm_A 294 NRLWNGIKDIEEVYLNGDLEHGAPNILNVSF-NY---------------VEGESLIMALKD---LAVSSGSACTSASLEP 354 (423)
T ss_dssp HHHHHHHTTSTTEEEESCSTTBCTTEEEEEE-TT---------------SCHHHHHHHTTT---EECBCCCC-----CCC
T ss_pred HHHHHHHhcCCCEEEeCCccccCCCeEEEEe-CC---------------CCHHHHHHHHhh---heeccCccccCCCccc
Confidence 9999999999999998765322334666665 22 246678888854 999999888631
Q ss_pred -hhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhhcccCccc-----cccccc
Q 043646 465 -YGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHRFLPLYHF-----NVKAGN 538 (625)
Q Consensus 465 -~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~~~~~y~~-----~~~~~~ 538 (625)
+....+++.... .++++||+++..++++|+++++++|++++.+..+..|+|.. +.++-+
T Consensus 355 ~~~~~~~g~~~~~---------------~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (423)
T 3lvm_A 355 SYVLRALGLNDEL---------------AHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQGVDLNSIE 419 (423)
T ss_dssp CHHHHHHTCCHHH---------------HHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHTSSHHHHHTTSCCCSCC--
T ss_pred cHHHHHhCCCccc---------------cCceEEEECCCCCCHHHHHHHHHHHHHHHHHhhccCccchhhhcccccCchh
Confidence 111112222111 13899999999999999999999999999998888886644 566668
Q ss_pred ccc
Q 043646 539 WCS 541 (625)
Q Consensus 539 w~~ 541 (625)
|+|
T Consensus 420 ~~~ 422 (423)
T 3lvm_A 420 WAH 422 (423)
T ss_dssp ---
T ss_pred hhc
Confidence 876
No 3
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=100.00 E-value=9.1e-37 Score=324.14 Aligned_cols=370 Identities=19% Similarity=0.284 Sum_probs=282.1
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQE 158 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (625)
+|||+++.++.|+.|.+++.+.+...++|+++ .+..+....+...++++++++++|++++ ++++| +|+++++..++.
T Consensus 2 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~-~g~t~a~~~~~~ 78 (382)
T 4eb5_A 2 AYFDYTSAKPVDERILEAMLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGG-TVVFT-SGATEANNLAII 78 (382)
T ss_dssp CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTCTTE-EEEEE-SSHHHHHHHHHH
T ss_pred eeeccCCCCCCCHHHHHHHHHHHHhccCCCCC-CcHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEc-CchHHHHHHHHH
Confidence 79999999999999999999988777778876 3555666778899999999999999765 89998 677888888877
Q ss_pred HhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH---cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCe
Q 043646 159 VMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ---SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPM 235 (625)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~---~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~ 235 (625)
++... ..++||+ |+++.++|+++...++. .|++++.+++++++.+|+++|+++++ ++++
T Consensus 79 ~l~~~-----------~~~~gd~--Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-----~~~~ 140 (382)
T 4eb5_A 79 GYAMR-----------NARKGKH--ILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLR-----DDTI 140 (382)
T ss_dssp HHHHH-----------HGGGCCE--EEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCC-----TTEE
T ss_pred HHHhh-----------ccCCCCE--EEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhc-----CCCe
Confidence 76200 0157775 99999999999877754 59999999998888899999999987 5789
Q ss_pred EEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 236 lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
+|++++++||||.+.|+++|.++|++||++ |+|++++.+..++++..+ +.|++++|+||++| |.|+|+++++++.
T Consensus 141 ~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~---~~di~~~s~sK~~g-~~g~G~~~~~~~~ 215 (382)
T 4eb5_A 141 LVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIEVDVEKI---GADMLTISSNDIYG-PKGVGALWIRKEA 215 (382)
T ss_dssp EEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBCCCHHHH---TCSEEEEETGGGTC-CSSCEEEEEETTC
T ss_pred EEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcccCcccc---CCCEEEeehHHhcC-CCceEEEEEcccc
Confidence 999999999999999999999999999999 999999988776666544 68999999999965 7779999998874
Q ss_pred cccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 043646 316 YQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALG 393 (625)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~ 393 (625)
.+.+...+++. ..++..++++..+.. .+++.++. .+.+.+.++.+++++++.+
T Consensus 216 ----~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~al~~~~---~~~~~~~~~~~~~~~~l~~ 270 (382)
T 4eb5_A 216 ----KLQPVILGGGQ------------------ENGLRSGSENVPSIVGFGKAAEITA---MEWREEAERLRRLRDRIID 270 (382)
T ss_dssp ----CCCCSSCSSCT------------------GGGTSCSCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred ----ccCceecCCCc------------------cccccCCCccHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHH
Confidence 13333333221 233456777665543 34455442 2477888899999999999
Q ss_pred hhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh---hHhh-
Q 043646 394 RILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY---GHTL- 469 (625)
Q Consensus 394 ~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~---~~~~- 469 (625)
.|.++|+++++.+.......++.|.+. + .+..++.+.|. ++||.+++|..|.... .+.+
T Consensus 271 ~L~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~l~-~~gi~v~~g~~~~~~~~~~~~~~~ 333 (382)
T 4eb5_A 271 NVLKIEESYLNGHPEKRLPNNVNVRFS-Y---------------IEGESIVLSLD-MAGIQASTGSACSSKTLQPSHVLM 333 (382)
T ss_dssp HHTTSTTEEECSCSSSBCTTEEEEEET-T---------------SCHHHHHHHHH-HHTCBCBCCCGGGTSSCCCCHHHH
T ss_pred HHhhCCCeEEeCCcccCCCCEEEEEeC-C---------------cCHHHHHHHHH-HCCEEEeccccccCCCCcccHHHH
Confidence 999998999876642222456666553 2 23668888886 4799999998775310 0000
Q ss_pred -hcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhhcccCcc
Q 043646 470 -LAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHRFLPLYH 531 (625)
Q Consensus 470 -l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~~~~~y~ 531 (625)
++.++. . .++++||+++.+++++|+++++++|++++.+..++.+.|.
T Consensus 334 ~~g~~~~--~-------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~ 381 (382)
T 4eb5_A 334 ACGLKHE--E-------------AHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRSMSPLYR 381 (382)
T ss_dssp HTTCCHH--H-------------HTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHTCTTC-
T ss_pred HcCCChh--c-------------cCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 111100 0 1489999999999999999999999999988777666663
No 4
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=100.00 E-value=4.3e-36 Score=321.39 Aligned_cols=393 Identities=23% Similarity=0.346 Sum_probs=298.7
Q ss_pred HHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh
Q 043646 55 LAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCL 134 (625)
Q Consensus 55 ~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~ 134 (625)
+..+|++|+...... .| +..+|||+++.++.|+.+.+++.+.+.....|++...+..++.......++++++++++
T Consensus 5 ~~~~r~~f~~~~~~~---~g-~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~ 80 (406)
T 1kmj_A 5 VDKVRADFPVLSREV---NG-LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFI 80 (406)
T ss_dssp HHHHHHTCGGGGCEE---TT-EECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCccccccc---CC-CceEEecCCccCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHc
Confidence 467899887542111 12 35899999999999999999999988776678876444455566778899999999999
Q ss_pred CC-CCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH----HHcCCeEEEEe
Q 043646 135 GG-GQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW----RQSLAEVVEIG 209 (625)
Q Consensus 135 g~-~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~----~~~G~~vv~v~ 209 (625)
|. +++ +|+|| +|+++++..++.++... .+++||+ |+++.++|+++...+ +..|++++.++
T Consensus 81 ~~~~~~-~v~~~-~g~t~a~~~~~~~~~~~-----------~~~~gd~--vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 145 (406)
T 1kmj_A 81 NARSAE-ELVFV-RGTTEGINLVANSWGNS-----------NVRAGDN--IIISQMEHHANIVPWQMLCARVGAELRVIP 145 (406)
T ss_dssp TCSCGG-GEEEE-SSHHHHHHHHHHHTHHH-----------HCCTTCE--EEEETTCCGGGTHHHHHHHHHHTCEEEEEC
T ss_pred CCCCCC-eEEEe-CChhHHHHHHHHHhhhh-----------cCCCCCE--EEEecccchHHHHHHHHHHHhCCCEEEEEe
Confidence 98 444 89998 67888888888776200 0367875 999999999876553 45699999999
Q ss_pred cCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCC
Q 043646 210 LDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGY 289 (625)
Q Consensus 210 ~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~ 289 (625)
.+.++.+|+++|+++++ +++++|++++++|+||.+.|+++|.++|++||+++|+|++++.+..++++... +.
T Consensus 146 ~~~~~~~d~~~l~~~l~-----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~---~~ 217 (406)
T 1kmj_A 146 LNPDGTLQLETLPTLFD-----EKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQAL---DC 217 (406)
T ss_dssp BCTTSCBCGGGHHHHCC-----TTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TC
T ss_pred cCCCCCcCHHHHHHHhc-----cCCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCccccc---CC
Confidence 98888899999999987 57999999999999999999999999999999999999999988776665544 68
Q ss_pred cEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHH
Q 043646 290 DAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AAL 367 (625)
Q Consensus 290 D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal 367 (625)
|+++.|+||++| |.|+|++++++++ .+.+.+...||+....... .....+.....+++.|++++.+.+. +++
T Consensus 218 d~~~~s~~K~~g-~~G~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~al 291 (406)
T 1kmj_A 218 DFYVFSGHKLYG-PTGIGILYVKEAL--LQEMPPWEGGGSMIATVSL---SEGTTWTKAPWRFEAGTPNTGGIIGLGAAL 291 (406)
T ss_dssp SEEEEEGGGTTS-CTTCEEEEECHHH--HHHCCCSSCSTTSEEEEET---TTEEEECCTTGGGCCSSCCHHHHHHHHHHH
T ss_pred CEEEEEchhccC-CCCcEEEEEeHHH--HhhcCCcccCCCceeeccc---ccccccCCCchhccCCCCCHHHHHHHHHHH
Confidence 999999999995 6669999999887 3445566666654332210 0001112224567778888777653 344
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHh
Q 043646 368 AFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLF 447 (625)
Q Consensus 368 ~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L 447 (625)
+++ +..+.+.+.++.+.+++++.+.|.++|+++++.+. .+++++.|.+ ++ ++..++.+.|
T Consensus 292 ~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~~~~~~~~~-~~---------------~~~~~~~~~l 351 (406)
T 1kmj_A 292 EYV--SALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ--NRLGVIAFNL-GK---------------HHAYDVGSFL 351 (406)
T ss_dssp HHH--HHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCT--TCCSEEEEEE-TT---------------CCHHHHHHHH
T ss_pred HHH--HHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC--CcCCEEEEEE-CC---------------CCHHHHHHHH
Confidence 444 33478889999999999999999999999988763 2467777754 32 2356788888
Q ss_pred hhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 448 NDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 448 ~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
. ++||.+++|..|..+... ..+ .++++||+++.++|++|+++++++|+++++.
T Consensus 352 ~-~~gi~v~~g~~~~~~~~~-~~g--------------------~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 404 (406)
T 1kmj_A 352 D-NYGIAVRTGHHCAMPLMA-YYN--------------------VPAMCRASLAMYNTHEEVDRLVTGLQRIHRL 404 (406)
T ss_dssp H-HTTEECEEECTTCHHHHH-HTT--------------------CSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred h-hCCcEEEeccccchHHHH-hcC--------------------CCCeEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 5 479999999988743211 111 1489999999999999999999999998764
No 5
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2e-36 Score=324.77 Aligned_cols=370 Identities=16% Similarity=0.183 Sum_probs=284.9
Q ss_pred HHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 043646 54 KLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRC 133 (625)
Q Consensus 54 ~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~ 133 (625)
.++.+|++|+... +..+|||+++.++.|+.|.+++.+.+...+.|++. .+..+.......++++++++++
T Consensus 12 ~~~~~r~~fp~~~---------~~~~~ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~ 81 (406)
T 3cai_A 12 DVARVRGLHPSLG---------DGWVHFDAPAGMLIPDSVATTVSTAFRRSGASTVG-AHPSARRSAAVLDAAREAVADL 81 (406)
T ss_dssp CHHHHHHTCTTTT---------SSCEECBGGGCCCCCHHHHHHHHHHHHHCCSSSCS-SSHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHhhhhcC---------CCeEEEeCCCcCCCCHHHHHHHHHHHHhcCCCCCC-ccHHHHHHHHHHHHHHHHHHHH
Confidence 4567899997761 34899999999999999999999988766667653 3445556678889999999999
Q ss_pred hCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH----cCCeEEEEe
Q 043646 134 LGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ----SLAEVVEIG 209 (625)
Q Consensus 134 ~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~----~G~~vv~v~ 209 (625)
+|++++ +|+|| +|+++++..++.++.. .+++||+ |+++..+|+++...+.. .|++++.++
T Consensus 82 ~g~~~~-~v~~~-~g~t~al~~~~~~l~~------------~~~~gd~--vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~ 145 (406)
T 3cai_A 82 VNADPG-GVVLG-ADRAVLLSLLAEASSS------------RAGLGYE--VIVSRLDDEANIAPWLRAAHRYGAKVKWAE 145 (406)
T ss_dssp HTCCGG-GEEEE-SCHHHHHHHHHHHTGG------------GGBTTCE--EEEETTSCGGGTHHHHHHHHHHBCEEEEEC
T ss_pred hCCCCC-eEEEe-CChHHHHHHHHHHHhh------------ccCCCCE--EEEcCCccHHHHHHHHHHHHhcCCeEEEEe
Confidence 999765 89998 7888889988876510 1467875 99999999998777765 699999999
Q ss_pred cC-CCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCC
Q 043646 210 LD-DNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDG 288 (625)
Q Consensus 210 ~~-~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~ 288 (625)
++ .++.+|+++|+++++ +++++|++++++|+||.+.|+++|.++|+++|+++|+|++++.|..++++..+ +
T Consensus 146 ~~~~~~~~d~~~l~~~l~-----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~---~ 217 (406)
T 3cai_A 146 VDIETGELPTWQWESLIS-----KSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRET---D 217 (406)
T ss_dssp CCTTTCCCCGGGHHHHCC-----TTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHH---C
T ss_pred cCcccCCcCHHHHHHHhC-----CCceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchhc---C
Confidence 98 678899999999987 57999999999999999999999999999999999999999988877776655 7
Q ss_pred CcEEEEcCCCCCCCCCCce-EEEEeccccccCCCCCcc--cCCceEEeeccccccccccccchhhhhcCCChhHHHHH--
Q 043646 289 YDAIFLATHKFLGGPGTPG-ILLISKALYQLGSSPPST--CGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI-- 363 (625)
Q Consensus 289 ~D~v~~S~hK~lggp~g~G-~l~v~~~~~~l~~~~p~~--~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~-- 363 (625)
+|++++|+||++| |. +| ++++++++ .+.+.+.. +|++ ...++..||++..+..
T Consensus 218 ~d~~~~s~~K~~g-~~-~G~~~~~~~~~--~~~l~~~~~~~~~~------------------~~~~~~~~t~~~~~~~a~ 275 (406)
T 3cai_A 218 ADVVTVNAHAWGG-PP-IGAMVFRDPSV--MNSFGSVSTNPYAT------------------GPARLEIGVHQFGLLAGV 275 (406)
T ss_dssp CSEEEEEGGGGTS-CS-CEEEEESCHHH--HHTSCCCCSCTTCC------------------GGGGGCCSCCCHHHHHHH
T ss_pred CCEEEeehhhhcC-CC-cCeEEEEehHH--HhhcCCcccCCCCC------------------ccccccCCCccHHHHHHH
Confidence 8999999999986 66 78 99998887 33444432 1111 1345667888777653
Q ss_pred HHHHHHHHHhhcC--------------HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCcc
Q 043646 364 RAALAFWVKEYIG--------------YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPEN 429 (625)
Q Consensus 364 ~aal~~~~~~~~g--------------~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~ 429 (625)
.++++++ +..| .+.+.++.+.+++++.+.|+++++++++.+. ..+.+++.|.+..
T Consensus 276 ~~al~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~-------- 344 (406)
T 3cai_A 276 VASIEYL--AALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRP-EAQIPVVSFAVHK-------- 344 (406)
T ss_dssp HHHHHHH--HTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCC-SSBCSEEEEEETT--------
T ss_pred HHHHHHH--HHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCc-cccCCEEEEEECC--------
Confidence 3455554 3334 6788889999999999999999999988764 3356676665531
Q ss_pred ccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHH
Q 043646 430 MKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEF 509 (625)
Q Consensus 430 ~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edi 509 (625)
.+..++.+.|.+ +||.+++|+.. + ....++.. . ..+++||+++.+++++|+
T Consensus 345 --------~~~~~~~~~L~~-~gi~v~~g~~~--~-~~~~~g~~----------------~-~~~~iRis~~~~~t~e~i 395 (406)
T 3cai_A 345 --------VPADRVVQRLAD-NGILAIANTGS--R-VLDVLGVN----------------D-VGGAVTVGLAHYSTMAEV 395 (406)
T ss_dssp --------BCHHHHHHHHHH-TTEECEECCSC--H-HHHHHTTT----------------T-TTCCEEEECCTTCCHHHH
T ss_pred --------cCHHHHHHHHHH-CCcEEecCChH--H-HHHHcCCC----------------C-CCCeEEEEeecCCCHHHH
Confidence 236678888855 79999987611 1 11011110 0 147899999999999999
Q ss_pred HHHHHHHHHH
Q 043646 510 EFILAALEFI 519 (625)
Q Consensus 510 d~ll~aL~~~ 519 (625)
++++++|+++
T Consensus 396 ~~~~~~l~~~ 405 (406)
T 3cai_A 396 DQLVRALASL 405 (406)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHh
Confidence 9999999753
No 6
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=100.00 E-value=2.8e-35 Score=316.71 Aligned_cols=398 Identities=23% Similarity=0.324 Sum_probs=298.3
Q ss_pred HHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Q 043646 52 EEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIK 131 (625)
Q Consensus 52 ~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia 131 (625)
+..+..+|++|+.....+ .| +..+|||++..++.|+.|.+++.+.+.....|++...+.++........+++++++
T Consensus 7 ~~~~~~~r~~f~~~~~~~---~g-~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la 82 (420)
T 1t3i_A 7 PSLAATVRQDFPILNQEI---NG-HPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVA 82 (420)
T ss_dssp CCHHHHHGGGCGGGSCEE---TT-EECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCcccccc---CC-CceEEecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHH
Confidence 456788999997652111 12 35899999999999999999999988766667775434455445677889999999
Q ss_pred HHhCC-CCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH----HHHHcCCeEE
Q 043646 132 RCLGG-GQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL----SWRQSLAEVV 206 (625)
Q Consensus 132 ~~~g~-~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~----~~~~~G~~vv 206 (625)
+++|. +++ ++++| +|+++++..++.+++.. .+++||+ |+++.++|++... ..+..|++++
T Consensus 83 ~~~~~~~~~-~v~~~-~g~t~a~~~~~~~~~~~-----------~~~~gd~--Vl~~~~~~~~~~~~~~~~~~~~g~~~~ 147 (420)
T 1t3i_A 83 KFINARSPR-EIVYT-RNATEAINLVAYSWGMN-----------NLKAGDE--IITTVMEHHSNLVPWQMVAAKTGAVLK 147 (420)
T ss_dssp HHTTCSCGG-GEEEE-SSHHHHHHHHHHHTHHH-----------HCCTTCE--EEEETTCCGGGTHHHHHHHHHHCCEEE
T ss_pred HHcCCCCCC-eEEEc-CChHHHHHHHHHHhhhc-----------ccCCCCE--EEECcchhHHHHHHHHHHHHhcCcEEE
Confidence 99998 444 89998 67788888888776200 0367875 9999999999643 3345799999
Q ss_pred EEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCC
Q 043646 207 EIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNI 286 (625)
Q Consensus 207 ~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~ 286 (625)
.++++.++.+|+++|+++++ +++++|++++++||||.+.|+++|.++|++||+++|+|++++.+..++++..+
T Consensus 148 ~v~~~~~~~~d~~~l~~~l~-----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~-- 220 (420)
T 1t3i_A 148 FVQLDEQESFDLEHFKTLLS-----EKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLI-- 220 (420)
T ss_dssp EECBCTTSSBCHHHHHHHCC-----TTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH--
T ss_pred EeccCCCCCcCHHHHHHhhC-----CCceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhc--
Confidence 99998888899999999997 57999999999999999999999999999999999999999988776666555
Q ss_pred CCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHH-
Q 043646 287 DGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRA- 365 (625)
Q Consensus 287 ~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~a- 365 (625)
+.|++++|+||.+| |.|+|++++++++ .+.+.+...+|+....... ....+.....++..|++++.+.+..
T Consensus 221 -~~di~~~s~sK~~~-~~g~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~ 292 (420)
T 1t3i_A 221 -DCDWLVASGHKMCA-PTGIGFLYGKEEI--LEAMPPFFGGGEMIAEVFF----DHFTTGELPHKFEAGTPAIAEAIALG 292 (420)
T ss_dssp -TCSEEEEEGGGTTS-CTTCEEEEECHHH--HHHSCCCSCSTTSEEEECS----SCEEECCTTGGGCCSSCCHHHHHHHH
T ss_pred -CCCEEEEehhhhcC-CCceEEEEEchHH--HhhcCceecCCCccccccc----cccCCCCchhhccCCCccHHHHHHHH
Confidence 68999999999765 6668999999887 3345555555554332211 0111223345667788887776543
Q ss_pred -HHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCC--CCcceEEEEeccCCCCCCccccccCCCCCChHH
Q 043646 366 -ALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSV--KRQAILSFLVYSTTNSSPENMKIERNKPLHGPF 442 (625)
Q Consensus 366 -al~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~--~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~ 442 (625)
+++++ +..+.+.+.++.+.+++++.+.|.++++++++.+... .+++++.|.+ ++ .+..+
T Consensus 293 ~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~ 354 (420)
T 1t3i_A 293 AAVDYL--TDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNV-AG---------------LHASD 354 (420)
T ss_dssp HHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEE-TT---------------BCHHH
T ss_pred HHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEE-CC---------------CCHHH
Confidence 45554 3457888899999999999999999989998876311 2467777764 22 13567
Q ss_pred HHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 443 VATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 443 v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+.+.|. ++||.+++|..|..+.... ++ .++++||+++.+++++|+++++++|+++++.
T Consensus 355 ~~~~l~-~~gi~v~~~~~~~~~~~~~-~g--------------------~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 412 (420)
T 1t3i_A 355 VATMVD-QDGIAIRSGHHCTQPLHRL-FD--------------------ASGSARASLYFYNTKEEIDLFLQSLQATIRF 412 (420)
T ss_dssp HHHHHH-TTTEECBCSCTTCHHHHHH-TT--------------------CCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HCCeEEeeccccchHHHHh-cC--------------------CCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 888885 4799999998886432111 11 1488999999999999999999999998876
Q ss_pred h
Q 043646 523 G 523 (625)
Q Consensus 523 ~ 523 (625)
.
T Consensus 413 ~ 413 (420)
T 1t3i_A 413 F 413 (420)
T ss_dssp T
T ss_pred h
Confidence 4
No 7
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=100.00 E-value=2e-36 Score=331.39 Aligned_cols=370 Identities=16% Similarity=0.140 Sum_probs=277.8
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhh-HHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVG-QRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~-~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
++.+|||+++.++.|+.+.+++.+.+.. +.+.....+..+ ..+..+.+++++++++++|++++ +|+|| +|++++++
T Consensus 66 ~~~iyld~~~~g~~p~~v~~~i~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~t-~g~t~al~ 142 (465)
T 3e9k_A 66 ENAIYFLGNSLGLQPKMVKTYLEEELDK-WAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEK-EIALM-NALTVNLH 142 (465)
T ss_dssp CBCEECBTTTSCCEETTHHHHHHHHHHH-HHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGG-GEEEC-SCHHHHHH
T ss_pred CCeEEecCCccCCChHHHHHHHHHHHHH-HHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcC-CEEEE-CCHHHHHH
Confidence 4789999999999999998888776632 222111111100 11234567789999999999876 89998 78999999
Q ss_pred HHHHHhcccccchhhhhhhhccCCCC-ceEEEEcCCCCchhHHHHH----HcCCeE-----EEEecCCCCCCCHHHHHHH
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEE-RWVVFLGPYEHHSNLLSWR----QSLAEV-----VEIGLDDNGLLDIEALRSQ 224 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd-~~~Vlv~~~~h~s~~~~~~----~~G~~v-----v~v~~~~~~~ld~~~L~~~ 224 (625)
.++.++. ++++ +..|+++..+|+++..+|. ..|+++ ..++.+.++.+|+++|+++
T Consensus 143 ~~~~~~~---------------~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~ 207 (465)
T 3e9k_A 143 LLMLSFF---------------KPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEV 207 (465)
T ss_dssp HHHHHHC---------------CCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHH
T ss_pred HHHHHhc---------------cccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHH
Confidence 9988872 3332 2359999999999776543 468764 3446666788999999999
Q ss_pred HHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCC-CCC
Q 043646 225 LELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFL-GGP 303 (625)
Q Consensus 225 l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~l-ggp 303 (625)
|+++ .+++++|++++++|+||.+.|+++|.++||+||+++++|+||+.|..++++..+ ++|++++|+||++ +||
T Consensus 208 i~~~--~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~---~~D~~~~s~~K~l~~gp 282 (465)
T 3e9k_A 208 IEKE--GDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDW---GVDFACWCSYKYLNAGA 282 (465)
T ss_dssp HHHH--GGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TCCEEEECSSSTTCCCT
T ss_pred HHhc--CCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhc---CCCEEEECcccccccCC
Confidence 9742 147899999999999999999999999999999999999999999999988877 8999999999999 579
Q ss_pred CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHH
Q 043646 304 GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIK 381 (625)
Q Consensus 304 ~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~ 381 (625)
.|+|++++++++ ...+.+...||........|.......+.....+++.||+++.+++. ++++++ +..|++.+.
T Consensus 283 ~~~g~l~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~--~~~~~~~~~ 358 (465)
T 3e9k_A 283 GGIAGAFIHEKH--AHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIF--KQATMKALR 358 (465)
T ss_dssp TCCCEEEECGGG--TTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHH--HHHCHHHHH
T ss_pred CceEEEEEcHHH--HhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHH--HHcCHHHHH
Confidence 889999999988 45566665554321111111111112223346788899999888764 445554 556899999
Q ss_pred HHHHHHHHHHHHhhCCC----------CcEEEeCCCC-CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhh
Q 043646 382 KQEDVYIESALGRILPN----------QNIQVLGNTS-VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDL 450 (625)
Q Consensus 382 ~~~~~l~~~l~~~L~~l----------~gv~v~~~~~-~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~ 450 (625)
++...+++++.+.|.++ ++++++.+.+ ..++++++|.+.. +..++.+.|.+
T Consensus 359 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~-----------------~~~~l~~~L~~- 420 (465)
T 3e9k_A 359 KKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV-----------------PNKDVFQELEK- 420 (465)
T ss_dssp HHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECC-----------------TTCCHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC-----------------CHHHHHHHHHH-
Confidence 99999999999999875 7999998753 3457888886641 13468888865
Q ss_pred cCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHhh
Q 043646 451 FGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITF-PYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 451 ~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~-~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.||.++.+ .++++|||+ ++++|++|+++++++|++++++.
T Consensus 421 ~Gi~v~~~---------------------------------~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 421 RGVVCDKR---------------------------------NPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp TTEECEEE---------------------------------TTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred CCEEEecC---------------------------------CCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence 69998721 248999999 89999999999999999988654
No 8
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=100.00 E-value=3.4e-34 Score=304.36 Aligned_cols=364 Identities=20% Similarity=0.297 Sum_probs=268.0
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQE 158 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (625)
+|||+++.++.|+.|.+++.+.+...+++++. .+..++.......++++++++++|++++ ++++| +|+++++..++.
T Consensus 3 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~-~g~t~a~~~~~~ 79 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPS-EIFFT-SCATESINWILK 79 (384)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHTCCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTSCGG-GEEEE-SCHHHHHHHHHH
T ss_pred EEEecCccCCCCHHHHHHHHHHHHhcCCCCcc-ccHHHHHHHHHHHHHHHHHHHHcCCCCC-eEEEE-CCHHHHHHHHHH
Confidence 79999999999999999999988776777765 3456667788889999999999998766 89998 778888888887
Q ss_pred HhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH---HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCe
Q 043646 159 VMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW---RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPM 235 (625)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~---~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~ 235 (625)
++... .+++||+ |+++.++|+++...+ +..|++++.++.+.++.+|+++|+++++ ++++
T Consensus 80 ~~~~~-----------~~~~gd~--vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-----~~~~ 141 (384)
T 1eg5_A 80 TVAET-----------FEKRKRT--IITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVD-----EDTF 141 (384)
T ss_dssp HHHHH-----------TTTTCCE--EEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCC-----TTEE
T ss_pred hhhhh-----------ccCCCCE--EEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhC-----CCCe
Confidence 76200 0157875 999999999987666 5679999999998888899999999987 5799
Q ss_pred EEEEecccCccccccCHHHHHHHHHHcC--CEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEec
Q 043646 236 LGSFSACSNVTGIYSDTRSIARLLHQYG--GFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISK 313 (625)
Q Consensus 236 lv~~~~~~n~TG~~~~l~~I~~la~~~g--~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~ 313 (625)
+|++++++||||.+.|+++|.++|++|| +++|+|++++.+..++++..+ +.|++++|+||++| |.|+|++++++
T Consensus 142 ~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~---~~di~~~s~sK~~g-~~G~G~~~~~~ 217 (384)
T 1eg5_A 142 LVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKL---EVDYASFSAHKFHG-PKGVGITYIRK 217 (384)
T ss_dssp EEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTT---CCSEEEEEGGGGTS-CTTCEEEEECT
T ss_pred EEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcccCchhc---CCCEEEecHHHhcC-CCceEEEEEcC
Confidence 9999999999999999999999999999 999999999987776666554 68999999999976 65689999988
Q ss_pred cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 043646 314 ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESA 391 (625)
Q Consensus 314 ~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l 391 (625)
++ .+.+...+++. ..++..++++..... .++++.+ ..+.+.+.++.+++++++
T Consensus 218 ~~----~~~~~~~~~~~------------------~~~~~~~~~~~~~~~a~~~al~~~---~~~~~~~~~~~~~~~~~l 272 (384)
T 1eg5_A 218 GV----PIRPLIHGGGQ------------------ERGLRSGTQNVPGIVGAARAMEIA---VEELSEAAKHMEKLRSKL 272 (384)
T ss_dssp TS----CCCCSBCSSCT------------------TTTTBCSCCCHHHHHHHHHHHHHH---HHTHHHHHHHHHHHHHHH
T ss_pred CC----ccccccccCcc------------------cccccCCCCChHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHH
Confidence 75 12222222211 122334565555443 2334432 235778888999999999
Q ss_pred HHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh---hHh
Q 043646 392 LGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY---GHT 468 (625)
Q Consensus 392 ~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~---~~~ 468 (625)
.+.|.+ +++++..+.......++.|.+. + ++..++.+.|. ++||.+++|..|.... .+.
T Consensus 273 ~~~L~~-~g~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~l~-~~gi~v~~g~~~~~~~~~~~~~ 334 (384)
T 1eg5_A 273 VSGLMN-LGAHIITPLEISLPNTLSVSFP-N---------------IRGSTLQNLLS-GYGIYVSTSSACTSKDERLRHV 334 (384)
T ss_dssp HHHHHT-TTCEECSCTTSBCTTEEEEECT-T---------------CCHHHHHHHHH-HTTEECBC------------CH
T ss_pred HHHhCC-CCeEEeCCcccCCCCEEEEEeC-C---------------CCHHHHHHHHh-hCCeEEeccccccCCCCcchHH
Confidence 999988 6888876532112345555442 2 23667888885 5899999998775210 000
Q ss_pred hhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 469 LLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 469 ~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
+..++.+... .++++||+++.+++++|+++++++|++++.+.
T Consensus 335 ~~~~g~~~~~-------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 376 (384)
T 1eg5_A 335 LDAMGVDRRI-------------AQGAIRISLCKYNTEEEVDYFLKKIEEILSFL 376 (384)
T ss_dssp HHHTTCCHHH-------------HHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCChhh-------------cCCeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 0001100000 13899999999999999999999999988764
No 9
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=100.00 E-value=4.7e-36 Score=317.03 Aligned_cols=355 Identities=12% Similarity=0.058 Sum_probs=264.6
Q ss_pred ceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCc--chhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 77 RLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSD--SYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 77 ~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~--~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
++--||.+++++.|+.|++++.+.+..+++|+.+.. ++.+..+.+.++++|+.+++++|++++++|+|+.+|+|++++
T Consensus 12 ~~~~~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n 91 (377)
T 3e77_A 12 DLGTENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFS 91 (377)
T ss_dssp ---CCCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHH
T ss_pred CcccccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHH
Confidence 456789999999999999999999988888876531 446778899999999999999999764589995467888899
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH--HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS--WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~--~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~ 232 (625)
.++..+.. -.+||+ |++...+|.+.... ++..|+.++.++.+.++.+++++++.+++ +
T Consensus 92 ~a~~~l~~-------------~~~Gd~--v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~-----~ 151 (377)
T 3e77_A 92 AVPLNLIG-------------LKAGRC--ADYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLN-----P 151 (377)
T ss_dssp HHHHHHGG-------------GSTTCE--EEECCCSHHHHHHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCCC-----T
T ss_pred HHHHhccC-------------CCCCCe--EEEEECCHHHHHHHHHHHHhCCceEEeccCCCcCCCCChHHhccC-----C
Confidence 88877620 123776 77777777775311 23358888878877666667776665555 6
Q ss_pred CCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEe
Q 043646 233 RPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLIS 312 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~ 312 (625)
++++|++++.+|.||++.|+ +|+++|+++++|++|++|..++|++++ |++++|+|||+| |.|+|+++++
T Consensus 152 ~t~lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~~~-----~~~~~s~~K~~g-p~G~g~l~~~ 220 (377)
T 3e77_A 152 DASYVYYCANETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVSKF-----GVIFAGAQKNVG-SAGVTVVIVR 220 (377)
T ss_dssp TCSCEEEESEETTTTEECSS-----CCCCTTCCEEEECTTTTTSSCCCGGGC-----SEEEEEGGGTTS-CTTCEEEEEE
T ss_pred CccEEEEeCccCchheEchh-----hhccCCCEEEEEcccccCCCCCchhhc-----CEEEEecccccC-CCccEEEEEc
Confidence 89999999999999999998 477899999999999999999999876 468999999995 9999999999
Q ss_pred ccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhc-CHHHHHHHHHHHHH
Q 043646 313 KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYI-GYEVIKKQEDVYIE 389 (625)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~-g~~~i~~~~~~l~~ 389 (625)
+++ +..+.|..+. .. .+....+.....|||++.+++. ++++++ ... |++.+.+|++.+++
T Consensus 221 ~~~--l~~~~~~~p~--~~-----------~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l--~~~GG~~~i~~~~~~l~~ 283 (377)
T 3e77_A 221 DDL--LGFALRECPS--VL-----------EYKVQAGNSSLYNTPPCFSIYVMGLVLEWI--KNNGGAAAMEKLSSIKSQ 283 (377)
T ss_dssp TTS--CSCCCTTSCG--GG-----------CHHHHHTTTTCSSCCCHHHHHHHHHHHHHH--HHTTHHHHHHHHHHHHHH
T ss_pred HHH--HhhccCCCCc--hh-----------hHHHHhhcCCCCCCchHHHHHHHHHHHHHH--HHccCHHHHHHHHHHHHH
Confidence 998 5555543321 10 0011112334578999988764 556665 456 79999999999999
Q ss_pred HHHHhhCCCCcEEEeCCCCCCCcc-eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHh
Q 043646 390 SALGRILPNQNIQVLGNTSVKRQA-ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHT 468 (625)
Q Consensus 390 ~l~~~L~~l~gv~v~~~~~~~~~~-i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~ 468 (625)
++++.|.++|++.+.......|++ +++|.+.... .+ ..++ ..+.+.|. ++||.+++|..+
T Consensus 284 ~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~-~~---------~~~~-~~~l~~l~-~~Gi~~~~g~~~------- 344 (377)
T 3e77_A 284 TIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAK-GD---------DALE-KRFLDKAL-ELNMLSLKGHRS------- 344 (377)
T ss_dssp HHHHHHHTSTTSEECCSCGGGBCSSEEEEEESSTT-CC---------HHHH-HHHHHHHH-HTTEESCBCCTT-------
T ss_pred HHHHHHHhcCCceecCCCHHHcCCcEEEEEcCCCC-Cc---------hhHH-HHHHHHHH-HCCcEEeCCCCc-------
Confidence 999999999998864432245666 5888874311 00 0011 23555553 479998876522
Q ss_pred hhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 469 LLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 469 ~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.+.+|+|+++++|++|||+++++|++++++
T Consensus 345 ------------------------~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 345 ------------------------VGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp ------------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 266999999999999999999999998765
No 10
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=100.00 E-value=1.6e-35 Score=316.98 Aligned_cols=372 Identities=18% Similarity=0.195 Sum_probs=260.7
Q ss_pred CCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHH
Q 043646 71 YSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTT 150 (625)
Q Consensus 71 ~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtt 150 (625)
.++..+..+|||+++.++.|+.+.+++.+.+...++|++. .+..+....+..+++++++++++|++++ +|++| +|++
T Consensus 14 ~~~~~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~-~v~~~-~g~t 90 (400)
T 3vax_A 14 LVPRGSHMTYLDAAATTRVDQRVADIVLHWMTAEFGNAGS-RHEYGIRAKRGVERAREYLASTVSAEPD-ELIFT-SGAT 90 (400)
T ss_dssp --------CCCCCCCCSSSCHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHHHHHHHHHHHHHHTTCCGG-GEEEE-SCHH
T ss_pred CCcccCCcEEecCCCCCCCCHHHHHHHHHHHHhccCCCcc-cchhHHHHHHHHHHHHHHHHHHcCCCCC-cEEEe-CCHH
Confidence 3444467899999999999999999999988766778776 3555666778899999999999999866 89998 7888
Q ss_pred HHHHHHHHHhcccccchhhhhhhhccCCCC-ceEEEEcCCCCchhHHHHHH---cCCeEEEEecCCCCCCCHHHHHHHHH
Q 043646 151 AAIKRLQEVMGITVPSIMRDKLITSLRDEE-RWVVFLGPYEHHSNLLSWRQ---SLAEVVEIGLDDNGLLDIEALRSQLE 226 (625)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd-~~~Vlv~~~~h~s~~~~~~~---~G~~vv~v~~~~~~~ld~~~L~~~l~ 226 (625)
+++..++.++... ..++|| + |+++..+|+++...++. .|++++.++++.++.+|+++|+++++
T Consensus 91 ~al~~~~~~l~~~-----------~~~~gd~~--Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~ 157 (400)
T 3vax_A 91 ESNNIALLGLAPY-----------GERTGRRH--IITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLR 157 (400)
T ss_dssp HHHHHHHHTTHHH-----------HHHHTCCE--EEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCC
T ss_pred HHHHHHHHHHHHh-----------hccCCCCE--EEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcC
Confidence 8888887765100 015677 6 99999999998877665 59999999999889999999999987
Q ss_pred HhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCc
Q 043646 227 LYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTP 306 (625)
Q Consensus 227 ~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~ 306 (625)
+++++|++++++||||.+.|+++|.++|++||+++|+|++++.+..++++..+ +|++++|+||++| |.|+
T Consensus 158 -----~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~----~d~~~~s~~K~~g-~~g~ 227 (400)
T 3vax_A 158 -----PDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTTP----IDMISISGHKIGA-PKGV 227 (400)
T ss_dssp -----TTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSC----CSEEEEETGGGTS-CSSC
T ss_pred -----CCceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhc----CcEEEEeHHHhCC-CCce
Confidence 57999999999999999999999999999999999999999998887776542 7999999999655 7789
Q ss_pred eEEE-Eeccccc--cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHH
Q 043646 307 GILL-ISKALYQ--LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIK 381 (625)
Q Consensus 307 G~l~-v~~~~~~--l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~ 381 (625)
|+++ ++++... -..+.+...++.. ..++..++++..+... +++..+ ..+.+.+.
T Consensus 228 g~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~a~~~al~~~---~~~~~~~~ 286 (400)
T 3vax_A 228 GALVTRRREEMDDERVPLEPIMFGGGQ------------------ERKLRPGTLPVPLIMGLAEAAKIF---EAEHAQWQ 286 (400)
T ss_dssp EEEEECBCSSSTTCBCCCCCSSCSSCT------------------GGGTSCSCCCHHHHHHHHHHHHHH---HHSHHHHH
T ss_pred EEEEEecchhccccccccCceecCCCc------------------eeeeecCCCCHHHHHHHHHHHHHH---HhhHHHHH
Confidence 9999 8873210 0123444433322 3445677777766543 344443 23678899
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCC
Q 043646 382 KQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCAC 461 (625)
Q Consensus 382 ~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~ 461 (625)
++.+++++++.+.|. .+++++..+.......++.|.+. + .+..++.+.|. +||.+++|..|
T Consensus 287 ~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~l~~~L~--~gi~v~~g~~~ 347 (400)
T 3vax_A 287 VAAQDLRSRLLAGLA-STSFQVNGDQDHVVPHILNLSFE-D---------------VDAEAFLVTLK--DLVAVATGSAS 347 (400)
T ss_dssp HHHHHHHHHHHHHHT-TTTCEECSCTTSBCTTEEEEECT-T---------------CCHHHHHHHHH--HHHHHTTTTEE
T ss_pred HHHHHHHHHHHHhhC-CCCEEEeCCcccCCCCEEEEEeC-C---------------CCHHHHHHHHh--cCcEEEecccc
Confidence 999999999999999 88999987653222345666443 2 24678888885 79999999887
Q ss_pred Cch---hhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHH
Q 043646 462 AGP---YGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITF-PYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 462 ~~~---~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~-~~~~t~edid~ll~aL~~~~~ 521 (625)
... ..+.+..++..... .++++||++ +.+++++|+++++++|+++++
T Consensus 348 ~~~~~~~~~~~~~~g~~~~~-------------~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~ 398 (400)
T 3vax_A 348 TSASFTPSHVLRAMGLPEEA-------------ASKSLRFSWTPGQATDLDVEELARGVAKLKP 398 (400)
T ss_dssp EEEEECCHHHHHTTTCCHHH-------------HTSEEEEEEEEC-------------------
T ss_pred cCCCCCccHHHHHcCCCccc-------------cCceEEEEccCCCCCHHHHHHHHHHHHHHhc
Confidence 632 01111111111100 148999999 999999999999999998764
No 11
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=100.00 E-value=2.9e-34 Score=305.77 Aligned_cols=372 Identities=17% Similarity=0.108 Sum_probs=275.6
Q ss_pred HHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCC-CCCCCCcchhhHHHHHHHHHHHHHHHH
Q 043646 54 KLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFY-GNTHTSDSYVGQRMTKMVHEASNYIKR 132 (625)
Q Consensus 54 ~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~-~n~~~~~~~~~~~~~~~~~~~~~~ia~ 132 (625)
.++.+|++|+.. ++.+|||+++.++.|+.|.+++.+.+.... .++.+ +...........++++.+++
T Consensus 3 ~~~~~r~~f~~~----------~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~--~~~y~~~~~~~~~l~~~la~ 70 (390)
T 1elu_A 3 MITPSLHQFPGL----------ANKTYFNFGGQGILPTVALEAITAMYGYLQENGPFS--IAANQHIQQLIAQLRQALAE 70 (390)
T ss_dssp -------CCGGG----------TTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSS--HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHhcCCC----------CCeEEecCCccCCCCHHHHHHHHHHHHHHhccCCcc--hhhHHHHHHHHHHHHHHHHH
Confidence 356778888643 457999999999999999999988774321 12221 11112234678899999999
Q ss_pred HhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH----HHcCCeEEEE
Q 043646 133 CLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW----RQSLAEVVEI 208 (625)
Q Consensus 133 ~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~----~~~G~~vv~v 208 (625)
++|++++ +|++| +|+++++..++.++. +++||+ |+++.++|+++...+ +..|++++.+
T Consensus 71 ~~g~~~~-~v~~~-~g~t~a~~~~~~~~~--------------~~~gd~--vl~~~~~~~~~~~~~~~~~~~~g~~~~~v 132 (390)
T 1elu_A 71 TFNVDPN-TITIT-DNVTTGCDIVLWGLD--------------WHQGDE--ILLTDCEHPGIIAIVQAIAARFGITYRFF 132 (390)
T ss_dssp HTTSCGG-GEEEE-SSHHHHHHHHHHHSC--------------CCTTCE--EEEETTCCHHHHHHHHHHHHHHCCEEEEE
T ss_pred HcCCCHH-HEEEe-CChHHHHHHHHhCCC--------------CCCCCE--EEEecCcccHHHHHHHHHHHHhCcEEEEE
Confidence 9998766 89998 678888888888762 367875 999999999987654 4569999999
Q ss_pred ecC--CCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHH----HcCCEEEEeccCcCCCccccCC
Q 043646 209 GLD--DNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLH----QYGGFACFDFAASGPYVKINLR 282 (625)
Q Consensus 209 ~~~--~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~----~~g~~vivD~A~~~g~~~id~~ 282 (625)
+.+ .++.+|+++|+++++ +++++|++++++||||.+.|+++|.++|+ ++|+++|+|++++.|..++++.
T Consensus 133 ~~~~~~~~~~d~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~ 207 (390)
T 1elu_A 133 PVAATLNQGDAAAVLANHLG-----PKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFS 207 (390)
T ss_dssp CCGGGSSSSCHHHHHHTTCC-----TTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTT
T ss_pred cCCCCCCccchHHHHHHhcC-----CCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChh
Confidence 987 567899999999887 57999999999999999999999999999 9999999999999888777765
Q ss_pred CCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH
Q 043646 283 SRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM 362 (625)
Q Consensus 283 ~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 362 (625)
.. +.|+++.|+|||+++|.|+|++++++++ .+.+.+...|++.+..... . ....+.+...++..++++....
T Consensus 208 ~~---~~d~~~~s~~K~~~~~~g~G~~~~~~~~--~~~~~~~~~g~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~ 279 (390)
T 1elu_A 208 RL---EVDYYAFTGHKWFAGPAGVGGLYIHGDC--LGEINPTYVGWRSITYGAK--G-EPTGWAEGGKRFEVATSAYPQY 279 (390)
T ss_dssp TS---CCSEEEEESSSTTCCCTTCEEEEECTTT--GGGCCCCSCCTTTEEECTT--S-CEEEECSGGGGGCCSCCCHHHH
T ss_pred hc---CCCEEEccccccccCCCceEEEEECHHh--HhhcCCccccCCccccccc--C-cccccccchHhhCCCCCCHHHH
Confidence 54 7899999999988778889999999887 4456666666654332110 0 0001112234566778776654
Q ss_pred H--HHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCC
Q 043646 363 I--RAALAFWVKEYIG-YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLH 439 (625)
Q Consensus 363 ~--~aal~~~~~~~~g-~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~ 439 (625)
. .++++.+ ...+ .+.+.++.+.+++++.+.|.++++++++.+. ...++++.|.+.. +.+
T Consensus 280 ~a~~~al~~l--~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~~~~~~~~~---------------~~~ 341 (390)
T 1elu_A 280 AGLLAALQLH--QRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATS-APQAGLVSFTVDS---------------PLG 341 (390)
T ss_dssp HHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSS-CCSSSEEEEEECS---------------SSC
T ss_pred HHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCc-cccccEEEEEcCC---------------CCC
Confidence 3 3445544 3334 8888999999999999999988899988652 2356777775422 134
Q ss_pred hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 440 GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 440 ~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
..++.+.|. ++||.+++|. .++++||+++++++++|+++++++|+++
T Consensus 342 ~~~~~~~l~-~~gi~v~~~~--------------------------------~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 342 HRAIVQKLE-EQRIYLRTIA--------------------------------DPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp HHHHHHHHH-HTTEECEEET--------------------------------TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHH-HCCEEEEecC--------------------------------CCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 668888885 5799998764 1378999999999999999999998753
No 12
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=100.00 E-value=1.5e-36 Score=322.59 Aligned_cols=346 Identities=13% Similarity=0.095 Sum_probs=241.1
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCC--cchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTS--DSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~--~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
.+|||+++.++.|+.|++++.+.+..+++|+.+. .++.+..+.+.++++|+.+++++|++++++|+|+.+|+|++++.
T Consensus 27 ~~yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ 106 (386)
T 3qm2_A 27 QVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAG 106 (386)
T ss_dssp CCEECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHH
T ss_pred cCccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHH
Confidence 3799999999999999999999888877877652 23356677889999999999999996544799932566777888
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH--HHHHcCCeEEEEecC--CCCC-CCHHHHHHHHHHhhh
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL--SWRQSLAEVVEIGLD--DNGL-LDIEALRSQLELYKA 230 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~--~~~~~G~~vv~v~~~--~~~~-ld~~~L~~~l~~~~~ 230 (625)
++..+ +++||+ |++...+|.+... ..+..| +|+.++.+ ..|. +++++++.+++
T Consensus 107 ai~~l---------------~~~gd~--v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~---- 164 (386)
T 3qm2_A 107 VPLNL---------------LGDKTT--ADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLS---- 164 (386)
T ss_dssp HHHHH---------------CTTCCE--EEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCC----
T ss_pred HHHhc---------------cCCCCe--EEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcC----
Confidence 87765 567886 4444444555421 123458 89999988 5664 77888877776
Q ss_pred CCCCeEEEEecccCccccc-cCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEE
Q 043646 231 AKRPMLGSFSACSNVTGIY-SDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGIL 309 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~-~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l 309 (625)
++|++|++++.+|.||++ .|+++|+ +|+++++|++|++|..++|++++ |++++|+|||+| |.|+|++
T Consensus 165 -~~t~lV~~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~-----~~~~~s~hK~lG-P~G~g~l 232 (386)
T 3qm2_A 165 -DNAAYLHYCPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSAPLDVSRY-----GVIYAGAQKNIG-PAGLTLV 232 (386)
T ss_dssp -TTCSCEEECSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSSCCCGGGC-----SEEEEETTTTTC-CTTEEEE
T ss_pred -CCCcEEEEECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCCCCCcccc-----CEEEEecccccC-CCccEEE
Confidence 689999999999999996 8999986 79999999999999999999876 578899999995 9999999
Q ss_pred EEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhc-CHHHHHHHHHH
Q 043646 310 LISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYI-GYEVIKKQEDV 386 (625)
Q Consensus 310 ~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~-g~~~i~~~~~~ 386 (625)
++++++ ++.+.|.... .+ .|....+.....|||++.+++ .++++++ ... |++.+.+|.+.
T Consensus 233 ~v~~~~--~~~~~~~~p~--~~-----------~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~--~~~gG~~~i~~~~~~ 295 (386)
T 3qm2_A 233 IVREDL--LGKAHESCPS--IL-----------DYTVLNDNDSMFNTPPTFAWYLSGLVFKWL--KAQGGVAAMHKINQQ 295 (386)
T ss_dssp EEEGGG--CSCCCTTSCG--GG-----------CHHHHHHC-------CCSHHHHHHHHHHHH--HHHTHHHHHHHHHHH
T ss_pred EECHHH--HhhhcccCCc--HH-----------HHHHHhhcCCCCCCCcHHHHHHHHHHHHHH--HHhcCHHHHHHHHHH
Confidence 999998 5555543211 00 011111334456898877765 4556665 455 79999999999
Q ss_pred HHHHHHHhhCCCCcEEEeCCCCCCCc-ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh
Q 043646 387 YIESALGRILPNQNIQVLGNTSVKRQ-AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY 465 (625)
Q Consensus 387 l~~~l~~~L~~l~gv~v~~~~~~~~~-~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~ 465 (625)
+++++++.|.+++.+....+ ...++ .+++|.+... +++ ..+...| +++||.++.|..|.
T Consensus 296 l~~~l~~~l~~~~~~~~~~~-~~~rs~~iv~f~~~~~--------------~~~-~~~~~~L-~~~gI~~~~g~~~~--- 355 (386)
T 3qm2_A 296 KAELLYGVIDNSDFYRNDVA-QANRSRMNVPFQLADN--------------TLD-KVFLEES-FAAGLHALKGHRVV--- 355 (386)
T ss_dssp HHHHHHHHHHTCSSEECCBC-GGGBCSSEEEEEESSG--------------GGH-HHHHHHH-HHTTEECCBCCTTT---
T ss_pred HHHHHHHHHHHCCCcccCCC-HHHcCceEEEEECCCc--------------ccc-HHHHHHH-HHCCCEEeCCCCCc---
Confidence 99999999998832233222 23355 4788887531 123 4566666 56799998876552
Q ss_pred hHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 466 GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 466 ~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+.+|+|++.++|++|||+++++|+++.++
T Consensus 356 ----------------------------~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 356 ----------------------------GGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp ----------------------------CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------CeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 45999999999999999999999998765
No 13
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.8e-34 Score=304.40 Aligned_cols=368 Identities=13% Similarity=0.103 Sum_probs=272.6
Q ss_pred HHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 043646 54 KLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRC 133 (625)
Q Consensus 54 ~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~ 133 (625)
....+|++|+.. ...+|||+.+.++.++.+.+++.+.+.. + ++....+..++++++++++
T Consensus 6 ~~~~~r~~f~~~----------~~~~~l~~~~~~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~~~~~la~~ 65 (386)
T 2dr1_A 6 FEEAFKEVYEMV----------KPKYKLFTAGPVACFPEVLEIMKVQMFS-----H-----RSKEYRKVHMDTVERLREF 65 (386)
T ss_dssp CHHHHHHHHHHH----------SCCSEECCSSSCCCCHHHHHHTTSCCCC-----T-----TSHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhc----------CccceeecCCCcCCcHHHHHHHhccccc-----c-----cCHHHHHHHHHHHHHHHHH
Confidence 345678888533 2357999999999999999988665421 1 2233577889999999999
Q ss_pred hCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCch--hHHHHHHcCCeEEEEecC
Q 043646 134 LGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHS--NLLSWRQSLAEVVEIGLD 211 (625)
Q Consensus 134 ~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s--~~~~~~~~G~~vv~v~~~ 211 (625)
+|.+..+++++| +|+++++..++.++ +++||+ |+++.+.|++ +...++..|++++.++.+
T Consensus 66 ~g~~~~~~v~~~-~g~t~a~~~~~~~l---------------~~~gd~--vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 127 (386)
T 2dr1_A 66 LEVEKGEVLLVP-SSGTGIMEASIRNG---------------VSKGGK--VLVTIIGAFGKRYKEVVESNGRKAVVLEYE 127 (386)
T ss_dssp HTCSSSEEEEES-SCHHHHHHHHHHHH---------------SCTTCE--EEEEESSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred hCCCCCcEEEEe-CChHHHHHHHHHHh---------------hcCCCe--EEEEcCCchhHHHHHHHHHhCCceEEEecC
Confidence 999723268888 67888888888776 467885 8999999988 666677789999999998
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcE
Q 043646 212 DNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDA 291 (625)
Q Consensus 212 ~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~ 291 (625)
.++.+|+++|++++.+. +++++|++++++||||.+.|+++|.++|++||+++|+|++++.+..++++..+ ++|+
T Consensus 128 ~~~~~d~~~l~~~l~~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~---~~di 201 (386)
T 2dr1_A 128 PGKAVKPEDLDDALRKN---PDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKW---GLDV 201 (386)
T ss_dssp TTCCCCHHHHHHHHHHC---TTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTT---TCSE
T ss_pred CCCCCCHHHHHHHHhcC---CCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCcccccccc---CCcE
Confidence 88889999999999631 47899999999999999999999999999999999999999988777666554 7899
Q ss_pred EEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchh-hhhcCCChhHHHHH--HHHHH
Q 043646 292 IFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIE-ERENGGTPQIVQMI--RAALA 368 (625)
Q Consensus 292 v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~-~~~~~gt~~~~~~~--~aal~ 368 (625)
+++|+||++++|.|+|++++++++. +.+.+....+.. .+...+..... .+...++++..... .++++
T Consensus 202 ~~~s~sK~~~~~~g~G~~~~~~~~~--~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 271 (386)
T 2dr1_A 202 VFSSSQKAFGVPPGLAIGAFSERFL--EIAEKMPERGWY--------FDIPLYVKYLKEKESTPSTPPMPQVFGINVALR 271 (386)
T ss_dssp EEEETTSTTCCCSSCEEEEECHHHH--HHHTTCTTCCST--------TCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHH
T ss_pred EEEeccccccCCCceEEEEECHHHH--HHHhcCCCCceE--------EeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHH
Confidence 9999999999887899999998873 222221111111 00010111111 23445566654443 34444
Q ss_pred HHHHhhc-CHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHh
Q 043646 369 FWVKEYI-GYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLF 447 (625)
Q Consensus 369 ~~~~~~~-g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L 447 (625)
.+ +.. |.+.+.++.+.+++++.+.|.++ ++++..+.......++.+.+.. +.+..++.+.|
T Consensus 272 ~~--~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~l 333 (386)
T 2dr1_A 272 II--EKMGGKEKWLEMYEKRAKMVREGVREI-GLDILAEPGHESPTITAVLTPP---------------GIKGDEVYEAM 333 (386)
T ss_dssp HH--HHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCTTCBCSSEEEEECCT---------------TCCHHHHHHHH
T ss_pred HH--HHhcCHHHHHHHHHHHHHHHHHHHHHc-CCeeCcCccccCCceEEEEcCC---------------CCCHHHHHHHH
Confidence 43 344 68889999999999999999887 7777665321134455554421 13467888888
Q ss_pred hhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 448 NDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 448 ~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.++ ||.+++|..+. .++++||+++.+++++|+++++++|++++.+.
T Consensus 334 ~~~-gi~v~~~~~~~-----------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 379 (386)
T 2dr1_A 334 RKR-GFELAKGYGSV-----------------------------KEKTFRIGHMGYMKFEDIQEMLDNLREVINEL 379 (386)
T ss_dssp HHT-TEECEECCGGG-----------------------------TTTEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHC-CeEEecCcccc-----------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 764 99999876321 24899999999999999999999999987653
No 14
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=100.00 E-value=7e-34 Score=303.34 Aligned_cols=357 Identities=11% Similarity=0.049 Sum_probs=264.1
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
+..+|||+++.++.|+.|.+++.+.+. + + .+........++++++++++|++++ ++++| +|+++++..
T Consensus 7 ~~~~yl~~~~~~~~~~~v~~a~~~~~~----~-~-----~~~~~~~~~~~l~~~la~~~g~~~~-~v~~t-~g~t~a~~~ 74 (392)
T 2z9v_A 7 ADPVITLTAGPVNAYPEVLRGLGRTVL----Y-D-----YDPAFQLLYEKVVDKAQKAMRLSNK-PVILH-GEPVLGLEA 74 (392)
T ss_dssp SCCSEECSSSCCCCCHHHHHHTTSCCC----C-T-----TSHHHHHHHHHHHHHHHHHTTCSSC-CEEES-SCTHHHHHH
T ss_pred CCcceeecCCCcCCCHHHHHHHhcccc----c-c-----ccHHHHHHHHHHHHHHHHHhCCCCC-EEEEe-CCchHHHHH
Confidence 356899999999999999999876553 1 1 1234567788999999999999755 89998 677778888
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH--HHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCC
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL--LSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~ 233 (625)
++.++ +++||+ |+++..+|+++. ...+..|++++.++++.++.+|+++|++++++. ++
T Consensus 75 ~~~~~---------------~~~gd~--Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~---~~ 134 (392)
T 2z9v_A 75 AAASL---------------ISPDDV--VLNLASGVYGKGFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAH---PE 134 (392)
T ss_dssp HHHHH---------------CCTTCC--EEEEESSHHHHHHHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHC---TT
T ss_pred HHHHh---------------cCCCCE--EEEecCCcccHHHHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcC---CC
Confidence 88776 468886 888889998863 223446999999999888889999999999631 47
Q ss_pred CeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEec
Q 043646 234 PMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISK 313 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~ 313 (625)
+++|++++++||||.+.|+++|.++|++||+++|+|++++.+..++++..+ ++|++++|+||++++|.|+|++++++
T Consensus 135 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~---~~d~~~~s~sK~~~~~~g~G~l~~~~ 211 (392)
T 2z9v_A 135 ITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDC---KADIYVTGPNKCLGAPPGLTMMGVSE 211 (392)
T ss_dssp CCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGG---TCSEEEECSSSTTCCCSCCEEEEECH
T ss_pred CcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccccccc---cceEEEecCcccccCCCceeEEEECH
Confidence 899999999999999999999999999999999999999988877776655 78999999999988888899999998
Q ss_pred cccccCCCCCcccCCceEEeeccccccccccccc-hhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 043646 314 ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLED-IEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIES 390 (625)
Q Consensus 314 ~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~-~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~ 390 (625)
++. +.+.+...|.+. +..+....... .......++++..++. .++++.+ ...|.+.+.++.+.++++
T Consensus 212 ~~~--~~l~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~g~~~~~~~~~~~~~~ 281 (392)
T 2z9v_A 212 RAW--AKMKANPLAPRA------SMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLY--LNEGPEAVWARHALTAKA 281 (392)
T ss_dssp HHH--HHHHTCTTSCCS------STTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHH
T ss_pred HHH--HHhhhccCCCCc------eeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHH
Confidence 863 222221110000 00000000000 0123446777776654 3455554 345788889999999999
Q ss_pred HHHhhCCCCcEEEeCCCC-CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhh
Q 043646 391 ALGRILPNQNIQVLGNTS-VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTL 469 (625)
Q Consensus 391 l~~~L~~l~gv~v~~~~~-~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~ 469 (625)
+.+.|.++ +++++.+.. .....++.|.+.. +++..++.+.|.+++||.+++|..+.
T Consensus 282 l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~L~~~~gi~v~~g~~~~------- 338 (392)
T 2z9v_A 282 MRAGVTAM-GLSVWAASDSIASPTTTAVRTPD---------------GVDEKALRQAARARYGVVFSSGRGET------- 338 (392)
T ss_dssp HHHHHHHT-TCCBSSSSGGGBCTTEEEEECCT---------------TCCHHHHHHHHHHHHCEECEECCGGG-------
T ss_pred HHHHHHHc-CCeeccCCccccCCceEEEECCC---------------CCCHHHHHHHHHhcCCEEEecCCCCC-------
Confidence 99999887 787766321 1234455555421 13467889988775699999876431
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHh
Q 043646 470 LAFDQTRSLEIRSAIQKGYLGVKPGWTRITF-PYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 470 l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~-~~~~t~edid~ll~aL~~~~~~ 522 (625)
.++++||++ +++++++|+++++++|++++++
T Consensus 339 ----------------------~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~ 370 (392)
T 2z9v_A 339 ----------------------LGKLTRIGHMGPTAQPIYAIAALTALGGAMNA 370 (392)
T ss_dssp ----------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCCeEEEeCcccccCHHHHHHHHHHHHHHHHH
Confidence 248899996 5589999999999999998765
No 15
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=100.00 E-value=1.9e-33 Score=302.62 Aligned_cols=370 Identities=17% Similarity=0.182 Sum_probs=267.5
Q ss_pred HHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 043646 53 EKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKR 132 (625)
Q Consensus 53 ~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~ 132 (625)
+.++.+|++|+.. +..+|||+++.++.|+.|.+++.+.+...++++... ...........+++++++++
T Consensus 14 ~~~~~~r~~f~~~----------~~~~yld~~~~~~~~~~v~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~ 82 (416)
T 1qz9_A 14 DSLAPLRQQFALP----------EGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIR-SWNSAGWRDLSERLGNRLAT 82 (416)
T ss_dssp CTTGGGGGGBCCC----------TTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGG-HHHHTSGGGHHHHHHHHHHT
T ss_pred chhHHHHHhCCCC----------CCeEeecCCCcCCCcHHHHHHHHHHHHHHHhccCcc-ccchhhHHHHHHHHHHHHHH
Confidence 3456677777643 468999999999999999999999886545554321 01111223677889999999
Q ss_pred HhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhcc----CCCCceEEEEcCCCCchhHHHHHH----c--C
Q 043646 133 CLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSL----RDEERWVVFLGPYEHHSNLLSWRQ----S--L 202 (625)
Q Consensus 133 ~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l----~~gd~~~Vlv~~~~h~s~~~~~~~----~--G 202 (625)
++|++++ +|+|| +|+++++..++.++. .+ ++||+ +|++++.+|+++..++.. . |
T Consensus 83 ~~g~~~~-~v~~~-~g~t~al~~al~~~~-------------~~~~~~~~gd~-vii~~~~~~~~~~~~~~~~~~~~~~g 146 (416)
T 1qz9_A 83 LIGARDG-EVVVT-DTTSINLFKVLSAAL-------------RVQATRSPERR-VIVTETSNFPTDLYIAEGLADMLQQG 146 (416)
T ss_dssp TTTCCTT-SEEEC-SCHHHHHHHHHHHHH-------------HHHHHHSTTCC-EEEEETTSCHHHHHHHHHHHHHHCSS
T ss_pred HcCCCcc-cEEEe-CChhHHHHHHHHhhc-------------ccccccCCCCc-EEEEcCCCCCchHHHHHHHHHHhcCC
Confidence 9999765 89998 677777876665541 02 57775 577778899987766543 3 9
Q ss_pred CeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCC
Q 043646 203 AEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLR 282 (625)
Q Consensus 203 ~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~ 282 (625)
++++.++. +++|+++++ +++++|++++++|+||.+.|+++|.++|++||+++|+|++++.|..++++.
T Consensus 147 ~~~~~v~~-------~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~ 214 (416)
T 1qz9_A 147 YTLRLVDS-------PEELPQAID-----QDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLH 214 (416)
T ss_dssp CEEEEESS-------GGGHHHHCS-----TTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHH
T ss_pred ceEEEeCc-------HHHHHHHhC-----CCceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCChh
Confidence 99999986 677888886 579999999999999999999999999999999999999999888777665
Q ss_pred CCCCCCCcEEEEcCCCCCCCCCCc-eEEEEeccccccCCCCCcccCC-ceEEeeccccccccccccchhhhhcCCChhHH
Q 043646 283 SRNIDGYDAIFLATHKFLGGPGTP-GILLISKALYQLGSSPPSTCGG-GTVNYVNAFDEKDTLYLEDIEERENGGTPQIV 360 (625)
Q Consensus 283 ~~~~~~~D~v~~S~hK~lggp~g~-G~l~v~~~~~~l~~~~p~~~gg-g~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 360 (625)
.+ ++|++++|+||+++++.++ |++++++++ .+.+.+...|+ +.. ..+.......+.....++..|+++..
T Consensus 215 ~~---~~d~~~~s~~K~l~~g~~~~g~l~~~~~~--~~~l~~~~~g~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (416)
T 1qz9_A 215 QA---GADYAIGCTYKYLNGGPGSQAFVWVSPQL--CDLVPQPLSGWFGHS---RQFAMEPRYEPSNGIARYLCGTQPIT 286 (416)
T ss_dssp HH---TCSEEEECSSSTTCCCTTCCCEEEECTTT--TTTSCCSCCCGGGBC---TTSCCCSSCCBCSSGGGGCCSCCCHH
T ss_pred hc---CCCEEEecCcccCCCCCCCeEEEEECHHH--HhccCCCccccCccc---cccCCCCccCCCcchHHhcCCCCCHH
Confidence 54 6899999999998655556 999999987 44555544432 110 00100000111122345667788777
Q ss_pred HHHH--HHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC-C--cEEEeCCCCC-CCcceEEEEeccCCCCCCccccccC
Q 043646 361 QMIR--AALAFWVKEYIGYEVIKKQEDVYIESALGRILPN-Q--NIQVLGNTSV-KRQAILSFLVYSTTNSSPENMKIER 434 (625)
Q Consensus 361 ~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l-~--gv~v~~~~~~-~~~~i~~f~~~~~~~~~~~~~~~~~ 434 (625)
+++. ++++.+ ...+.+.+.++.+.+++++.+.|.++ | +++++.+... .+.+++.+.+.
T Consensus 287 ~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------------- 350 (416)
T 1qz9_A 287 SLAMVECGLDVF--AQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP-------------- 350 (416)
T ss_dssp HHHHHHHHHHHH--TTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT--------------
T ss_pred HHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC--------------
Confidence 6543 445443 44678889999999999999999875 6 8888776321 23455544432
Q ss_pred CCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecC-CCCCHHHHHHHH
Q 043646 435 NKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFP-YYMSNEEFEFIL 513 (625)
Q Consensus 435 ~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~-~~~t~edid~ll 513 (625)
+..++.+.|.+ +||.++.. .++++||+++ ++++++|+++++
T Consensus 351 ----~~~~l~~~l~~-~gi~~~~~---------------------------------~~~~lRis~~~~~~t~~~i~~~~ 392 (416)
T 1qz9_A 351 ----EGYAVIQALID-RGVIGDYR---------------------------------EPRIMRFGFTPLYTTFTEVWDAV 392 (416)
T ss_dssp ----THHHHHHHHHT-TTEECEEE---------------------------------TTTEEEEECCTTTCCHHHHHHHH
T ss_pred ----CHHHHHHHHHh-CCcEeccC---------------------------------CCCeEEEeCcccCCCHHHHHHHH
Confidence 14578888865 69987421 1488999998 699999999999
Q ss_pred HHHHHHHHhh
Q 043646 514 AALEFIAAYG 523 (625)
Q Consensus 514 ~aL~~~~~~~ 523 (625)
++|++++.+.
T Consensus 393 ~~l~~~~~~~ 402 (416)
T 1qz9_A 393 QILGEILDRK 402 (416)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhcc
Confidence 9999988764
No 16
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=100.00 E-value=6.7e-34 Score=299.48 Aligned_cols=344 Identities=10% Similarity=0.045 Sum_probs=255.1
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCc--chhhHHHHHHHHHHHHHHHHHhCCCCCCcEEE-eCChHHHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSD--SYVGQRMTKMVHEASNYIKRCLGGGQADAIIF-CGAGTTAAIK 154 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~--~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vif-t~sGttaal~ 154 (625)
.+|+=+++.++.|+.|++++.+.+..+++|+.+.. ++.+..+.+.++++|+.+++++|++++++|+| | +|+|++++
T Consensus 5 ~~~~f~pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t-~~~T~a~n 83 (361)
T 3m5u_A 5 RKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQ-GGASLQFA 83 (361)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEES-SHHHHHHH
T ss_pred ceEeecCCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEc-CcHHHHHH
Confidence 35667788899999999999999988777775421 23466788999999999999999975447998 7 67888899
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCce-EEEEcCCCCchhHHHHHHcCCeEEEEecCCCCC--CCHHHHHHHHHHhhhC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERW-VVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGL--LDIEALRSQLELYKAA 231 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~-~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~--ld~~~L~~~l~~~~~~ 231 (625)
.++..+ + ++|+. +|+.+..+|... ...+..|++++.++.++++. ++++. + |+
T Consensus 84 ~~~~~~---------------~-~~~~~~~i~~~~~~~~~~-~~a~~~G~~v~~~~~~~~g~~~~~~~~-~--l~----- 138 (361)
T 3m5u_A 84 MIPMNL---------------A-LNGVCEYANTGVWTKKAI-KEAQILGVNVKTVASSEESNFDHIPRV-E--FS----- 138 (361)
T ss_dssp HHHHHH---------------C-CSSCEEEEECSHHHHHHH-HHHHHTTCCEEEEEECTTTTSCSCCCC-C--CC-----
T ss_pred HHHHhc---------------C-CCCeEEEEeCCHHHHHHH-HHHHHcCCceEEEecccCcCCCcCChh-h--cC-----
Confidence 887766 4 56652 344444444433 23345699999999988764 56665 3 65
Q ss_pred CCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEE
Q 043646 232 KRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLI 311 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v 311 (625)
+++++|+++|.+|.||++.|. | ++ +|+++++|++|++|..++|++. +|++++|+|||+| |.|+|++++
T Consensus 139 ~~t~lv~~~~~e~~tG~~~~~--i---~~-~~~~~~vD~~q~~g~~~id~~~-----~d~~~~s~~K~~g-p~G~g~l~~ 206 (361)
T 3m5u_A 139 DNADYAYICSNNTIYGTQYQN--Y---PK-TKTPLIVDASSDFFSRKVDFSN-----IALFYGGVQKNAG-ISGLSCIFI 206 (361)
T ss_dssp TTSSEEEEESEETTTTEECSS--C---CC-CSSCEEEECGGGTTSSCCCCTT-----EEEEEEETTTTSS-CTTCEEEEE
T ss_pred CCCCEEEEeCCCCCcceeCCc--c---cc-cCCEEEEEcccccCCCCCCccc-----CCEEEEechhccC-CCccEEEEE
Confidence 689999999999999999772 3 33 4999999999999999999974 5999999999996 999999999
Q ss_pred eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhc-CHHHHHHHHHHHH
Q 043646 312 SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYI-GYEVIKKQEDVYI 388 (625)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~-g~~~i~~~~~~l~ 388 (625)
++++ ++.+.|.... ... .+....+.....|||++.+++. ++++++ ... |++.+.+|++.++
T Consensus 207 ~~~~--~~~~~~~~~p-~~~-----------~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l--~~~gG~~~i~~~~~~l~ 270 (361)
T 3m5u_A 207 RKDM--LERSKNKQIP-SML-----------NYLTHAENQSLFNTPPTFAIYMFNLEMDWL--LNQGGLDKVHEKNSQKA 270 (361)
T ss_dssp EHHH--HHHHHTCCCC-GGG-----------CHHHHHHTTTCSSCCCHHHHHHHHHHHHHH--HTTTCHHHHHHHHHHHH
T ss_pred cHHH--HhhhcCCCCC-cee-----------ehHHHhhcCCCCCCccHHHHHHHHHHHHHH--HHccCHHHHHHHHHHHH
Confidence 9988 3333231100 000 0000112344568999988764 556665 566 8999999999999
Q ss_pred HHHHHhhCCCCcE-EEeCCCCCCCc-ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhh
Q 043646 389 ESALGRILPNQNI-QVLGNTSVKRQ-AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYG 466 (625)
Q Consensus 389 ~~l~~~L~~l~gv-~v~~~~~~~~~-~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~ 466 (625)
+++++.|.+++++ +++.+. ..+. .+++|.+.... .++ ..+...| +++||.++.|..+.
T Consensus 271 ~~l~~~L~~~~g~~~~~~~~-~~rs~~ivsf~~~~~~-------------~~~-~~~~~~L-~~~gI~~~~g~~~~---- 330 (361)
T 3m5u_A 271 TMLYECIDLSNGFYKGHADK-KDRSLMNVSFNIAKNK-------------DLE-PLFVKEA-EEAGMIGLKGHRIL---- 330 (361)
T ss_dssp HHHHHHHHTSTTSEEESSCG-GGBCSSEEEEEESSCT-------------THH-HHHHHHH-HHTTEECCBCCTTT----
T ss_pred HHHHHHHHHCCCeeeccCCH-HHcCCeEEEEECCCch-------------hhh-HHHHHHH-HHCCCEEecCCCcc----
Confidence 9999999999866 665442 2344 57888874311 122 3577777 55799998775432
Q ss_pred HhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 467 HTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 467 ~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+.+|+|++.++|++|||+++++|+++.++
T Consensus 331 ---------------------------g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 331 ---------------------------GGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp ---------------------------CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------CeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 55999999999999999999999998765
No 17
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=100.00 E-value=6.8e-33 Score=300.04 Aligned_cols=374 Identities=18% Similarity=0.216 Sum_probs=271.3
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
+..+|||+++.+++|+.|.+++.+.+...+++|+. .+..+....+..+++++++++++|++++ +|+|| +|+++++..
T Consensus 17 ~~~~~Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~-~g~t~a~~~ 93 (432)
T 3a9z_A 17 NRKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSS-SYVAGRKAKDIINTARASLAKMIGGKPQ-DIIFT-SGGTESNNL 93 (432)
T ss_dssp -CCEECBTTTCCCCCHHHHHHHHHHHHHCCSCTTC-SSHHHHHHHHHHHHHHHHHHHHHTCCGG-GEEEE-SCHHHHHHH
T ss_pred CCcEEeeCCccCCCCHHHHHHHHHHHHHhcCCCcc-CcHHHHHHHHHHHHHHHHHHHHcCCCcC-eEEEe-CChHHHHHH
Confidence 46799999999999999999999988666677775 3556666788899999999999999766 89998 788888888
Q ss_pred HHHHhcccccchhhhhhhhccCCCCc-----------eEEEEcCCCCchhHHHHHH----cCCeEEEEecCC-CCCCCHH
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEER-----------WVVFLGPYEHHSNLLSWRQ----SLAEVVEIGLDD-NGLLDIE 219 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~-----------~~Vlv~~~~h~s~~~~~~~----~G~~vv~v~~~~-~~~ld~~ 219 (625)
++.++..... +. ..++||+ ..|+++..+|+++..+|.. .|++++.++++. ++.+|++
T Consensus 94 ~~~~~~~~~~---~~----~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~ 166 (432)
T 3a9z_A 94 VIHSTVRCFH---EQ----QTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVE 166 (432)
T ss_dssp HHHHHHHHHH---HH----HHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHH
T ss_pred HHHHHHhhhh---hc----cccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHH
Confidence 7776520000 00 0024431 2588889999999877654 589999999986 7789999
Q ss_pred HHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcC----------CEEEEeccCcCCCccccCCCCCCCCC
Q 043646 220 ALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYG----------GFACFDFAASGPYVKINLRSRNIDGY 289 (625)
Q Consensus 220 ~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g----------~~vivD~A~~~g~~~id~~~~~~~~~ 289 (625)
+|+++++ +++++|++++++||||.+.|+++|.++|+++| +++|+|++++.+..++++... ++
T Consensus 167 ~l~~~i~-----~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~---~~ 238 (432)
T 3a9z_A 167 DILAAVR-----PTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDL---GV 238 (432)
T ss_dssp HHHHTCC-----TTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHH---CC
T ss_pred HHHHhcc-----CCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhhc---CC
Confidence 9999887 57999999999999999999999999999999 999999999988777766554 78
Q ss_pred cEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHH
Q 043646 290 DAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAAL 367 (625)
Q Consensus 290 D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal 367 (625)
|++++|+||++| |. +|+++++++.. ...+.+...|++. ..++..++++..+.. .+++
T Consensus 239 d~~~~s~~K~~g-~~-~G~~~~~~~~~-~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~a~~aal 297 (432)
T 3a9z_A 239 DFLTIVGHKFYG-PR-IGALYVRGVGK-LTPLYPMLFGGGQ------------------ERNFRPGTENTPMIAGLGKAA 297 (432)
T ss_dssp SEEEEEGGGTTC-CS-CEEEEETTBTT-TBCCCCSCCSSCG------------------GGGTSCSCCCHHHHHHHHHHH
T ss_pred CEEEEehhHhcC-Cc-ceEEEEccccc-cCCcCceeecCCc------------------cccccCCCcCHHHHHHHHHHH
Confidence 999999999986 77 89999998751 1234555555432 234556777766543 3445
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcE--EEeCCC-CCCCcc-eEEEEeccCCCCCCccccccCCCCCChHHH
Q 043646 368 AFWVKEYIGYEVIKKQEDVYIESALGRILPNQNI--QVLGNT-SVKRQA-ILSFLVYSTTNSSPENMKIERNKPLHGPFV 443 (625)
Q Consensus 368 ~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv--~v~~~~-~~~~~~-i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v 443 (625)
+++ + .+.+.+.++.+++++++.+.|.+++++ .+.++. ...+.+ +++|.+... +.+...+
T Consensus 298 ~~~--~-~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 360 (432)
T 3a9z_A 298 DLV--S-ENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGS--------------QLRGYMV 360 (432)
T ss_dssp HHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECST--------------TCCHHHH
T ss_pred HHH--H-hhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCC--------------CCcHHHH
Confidence 544 2 257788899999999999999876554 333441 112334 666665421 1234456
Q ss_pred HHHhhhhcCeeeecCCCCCchhh----Hhhh--cCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 043646 444 ATLFNDLFGIQARGGCACAGPYG----HTLL--AFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALE 517 (625)
Q Consensus 444 ~~~L~~~~gI~v~~G~~~~~~~~----~~~l--~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~ 517 (625)
.+.+ .+|.++.|..|...+. +.+. ++... ...+++|||++.++|++|+++++++|+
T Consensus 361 ~~~l---~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~---------------~~~~~iRis~~~~~t~eei~~~~~~l~ 422 (432)
T 3a9z_A 361 LAQC---QTLLASVGASCHSDHEDRPSPVLLSCGIPVD---------------VARNAVRLSVGRSTTRAEVDLIVQDLK 422 (432)
T ss_dssp HHHC---SSEECBSSCGGGGGGTTSCCHHHHHTTCCHH---------------HHTTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred HHHh---cCeEEeccccccCCCCCCccHHHHhcCCCcc---------------ccCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 6555 3899999988863210 1111 11100 014899999999999999999999999
Q ss_pred HHHHhh
Q 043646 518 FIAAYG 523 (625)
Q Consensus 518 ~~~~~~ 523 (625)
+++...
T Consensus 423 ~~~~~~ 428 (432)
T 3a9z_A 423 QAVNQL 428 (432)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 987653
No 18
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=100.00 E-value=4.9e-33 Score=296.88 Aligned_cols=355 Identities=13% Similarity=0.094 Sum_probs=262.3
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
++.+|+++.+..+.++.+.+++.+.+.. + ..........++++++++++|++++++|++| +|+++++..
T Consensus 17 ~~~~~~~~~g~~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~-~g~t~a~~~ 85 (393)
T 2huf_A 17 TPNKLLMGPGPSNAPQRVLDAMSRPILG-----H-----LHPETLKIMDDIKEGVRYLFQTNNIATFCLS-ASGHGGMEA 85 (393)
T ss_dssp CCCCEECSSSCCCCCHHHHHHTTSCCCC-----T-----TSHHHHHHHHHHHHHHHHHHTCCCSEEEEES-SCHHHHHHH
T ss_pred CCCeEEecCCCCCCCHHHHHHHHhhhcc-----C-----CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEc-CcHHHHHHH
Confidence 4567889888888899999988665532 1 1233567788999999999999754368888 677788888
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH--HHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCC
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL--LSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~ 233 (625)
++.++ +++||+ |+++.++|+++. ...+..|++++.++++.++.+|+++|++++++ .+
T Consensus 86 ~~~~~---------------~~~gd~--vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----~~ 144 (393)
T 2huf_A 86 TLCNL---------------LEDGDV--ILIGHTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLI----HK 144 (393)
T ss_dssp HHHHH---------------CCTTCE--EEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH----HC
T ss_pred HHHHH---------------hCCCCE--EEEECCCcchHHHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhc----cC
Confidence 88776 468885 888888898853 22345799999999988888999999999983 17
Q ss_pred CeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEec
Q 043646 234 PMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISK 313 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~ 313 (625)
+++|++++++||||.+.|+++|.++|++||+++|+|++++.+..++++..+ ++|++++|+||++++|.|+|++++++
T Consensus 145 ~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~sK~l~g~~G~G~~~~~~ 221 (393)
T 2huf_A 145 PSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRW---EIDAMYTGSQKVLGAPPGITPVSFSH 221 (393)
T ss_dssp CSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTT---TCSEEECCSSSTTCCCSSCEEEEECH
T ss_pred CcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhc---CccEEEECCCcccccCCCeEEEEECH
Confidence 899999999999999999999999999999999999999988877776654 78999999999988888899999998
Q ss_pred cccc-cCCC----CCcccCCceEEeeccccccccccc-cchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHH
Q 043646 314 ALYQ-LGSS----PPSTCGGGTVNYVNAFDEKDTLYL-EDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQED 385 (625)
Q Consensus 314 ~~~~-l~~~----~p~~~ggg~v~~~~~~~~~~~~~~-~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~ 385 (625)
++.. +... .+...+++. ...++ .....++..++++..+.+. ++++.+ ...+.+.+.++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~ 289 (393)
T 2huf_A 222 RAVERYKRRNTKVKVYYWDMSL----------VGDYWGCFGRPRIYHHTISSTLLYGLREAIAMA--CEEGLPALIARHE 289 (393)
T ss_dssp HHHHHHHTCSSCCSCGGGCHHH----------HHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHH
T ss_pred HHHHHHhhcCCCCceEEEchHH----------HHhhhccccccCCCCCCCCHHHHHHHHHHHHHH--HHhCHHHHHHHHH
Confidence 7632 1111 121111000 00000 0112345567877776543 344443 3346888889999
Q ss_pred HHHHHHHHhhCCCCcEEEeCCCCCCCcc-eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCch
Q 043646 386 VYIESALGRILPNQNIQVLGNTSVKRQA-ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464 (625)
Q Consensus 386 ~l~~~l~~~L~~l~gv~v~~~~~~~~~~-i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~ 464 (625)
.+++++.+.|.++ +++++.+.. .+.+ ++.+.+.. +++..++.+.|.+++||.+++|..|.
T Consensus 290 ~~~~~l~~~L~~~-g~~~~~~~~-~~~~~~~~~~~~~---------------~~~~~~~~~~L~~~~gi~v~~g~~~~-- 350 (393)
T 2huf_A 290 DCAKRLYRGLQDA-GFELYADPK-DRLSTVTTIKVPQ---------------GVDWLKAAQYAMKTYLVEISGGLGPT-- 350 (393)
T ss_dssp HHHHHHHHHHHHT-TCCBSSCGG-GBCTTEEEEECCT---------------TCCHHHHHHHHHHHHCEECBCCCGGG--
T ss_pred HHHHHHHHHHHHc-CCeeccCcc-ccCCcEEEEEcCC---------------CCCHHHHHHHHHHhCCEEEecCcccc--
Confidence 9999999999887 777765531 1334 55554421 23467888888776799999887542
Q ss_pred hhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHhh
Q 043646 465 YGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITF-PYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~-~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.++++||++ ++.++++|+++++++|++++.+.
T Consensus 351 ---------------------------~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~ 383 (393)
T 2huf_A 351 ---------------------------AGQVFRIGLMGQNATTERVDRVLQVFQEAVAAV 383 (393)
T ss_dssp ---------------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------cCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHc
Confidence 248999999 55568999999999999988764
No 19
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=100.00 E-value=4e-33 Score=297.86 Aligned_cols=366 Identities=14% Similarity=0.117 Sum_probs=264.0
Q ss_pred ceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 043646 77 RLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRL 156 (625)
Q Consensus 77 ~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l 156 (625)
...|+++.+..+.++.+.+++.+.+.. + ++........++++++++++|.+++++|++| +|+++++..+
T Consensus 17 ~~~~~~~~~p~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~-~g~t~al~~~ 85 (396)
T 2ch1_A 17 PEKIMMGPGPSNCSKRVLTAMTNTVLS-----N-----FHAELFRTMDEVKDGLRYIFQTENRATMCVS-GSAHAGMEAM 85 (396)
T ss_dssp CCCBCCSSSSCCCCHHHHHHTTSCCCC-----T-----TCHHHHHHHHHHHHHHHHHHTCCCSCEEEES-SCHHHHHHHH
T ss_pred CcceeecCCCCCCCHHHHHHhcccccc-----C-----CChhHHHHHHHHHHHHHHHhCCCCCcEEEEC-CcHHHHHHHH
Confidence 456777777777888888887654421 1 1233446688999999999999754368888 7788888888
Q ss_pred HHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH--HHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 157 QEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL--LSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
+.++ +++||+ |+++.++|+++. ..++..|++++.++++.++.+|+++|++++++ .++
T Consensus 86 ~~~~---------------~~~gd~--vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~----~~~ 144 (396)
T 2ch1_A 86 LSNL---------------LEEGDR--VLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIEL----HQP 144 (396)
T ss_dssp HHHH---------------CCTTCE--EEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHH----HCC
T ss_pred HHHh---------------cCCCCe--EEEEcCCcccHHHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHh----CCC
Confidence 8876 478885 888889999874 25567899999999988888999999999984 268
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecc
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKA 314 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~ 314 (625)
++|++++++||||.+.|+++|.++|+++|+++|+|++++.+..++++..+ ++|+++.|+||++++|.|+|+++++++
T Consensus 145 ~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~---~~d~~~~s~~K~~~~~~g~g~~~~~~~ 221 (396)
T 2ch1_A 145 KCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKW---EIDAVYTGAQKVLGAPPGITPISISPK 221 (396)
T ss_dssp SEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTT---TCCEEECCCC-CCCCCSSCEEEEECHH
T ss_pred CEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccchhhc---CcCEEEEcCCccccCCCCeEEEEECHH
Confidence 99999999999999999999999999999999999999988877777665 789999999999998888999999887
Q ss_pred ccc-cCCC----CCcccCCceEEeecccccccccccc-chhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHH
Q 043646 315 LYQ-LGSS----PPSTCGGGTVNYVNAFDEKDTLYLE-DIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDV 386 (625)
Q Consensus 315 ~~~-l~~~----~p~~~ggg~v~~~~~~~~~~~~~~~-~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~ 386 (625)
+.. +... .+...+... + ..++. ....++..++++..+.. .++++.+ ...+.+.+.++.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~ 289 (396)
T 2ch1_A 222 ALDVIRNRRTKSKVFYWDLLL------L----GNYWGCYDEPKRYHHTVASNLIFALREALAQI--AEEGLENQIKRRIE 289 (396)
T ss_dssp HHHHHHTCSSCCSCGGGCHHH------H----HHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHH
T ss_pred HHHhhhhccCcccceEechHH------H----HHhhhhhcccCCCCCCCcHHHHHHHHHHHHHH--HHhhHHHHHHHHHH
Confidence 632 1111 111111000 0 00000 00123455677665543 2344443 23578888899999
Q ss_pred HHHHHHHhhCCCCcEEEeCCCCCCCcc-eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh
Q 043646 387 YIESALGRILPNQNIQVLGNTSVKRQA-ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY 465 (625)
Q Consensus 387 l~~~l~~~L~~l~gv~v~~~~~~~~~~-i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~ 465 (625)
+++++.+.|.++ +++++.+....+.+ ++.+.+.. +++..++.+.|.+++||.+++|..|.
T Consensus 290 ~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~L~~~~gi~v~~g~~~~--- 350 (396)
T 2ch1_A 290 CAQILYEGLGKM-GLDIFVKDPRHRLPTVTGIMIPK---------------GVDWWKVSQYAMNNFSLEVQGGLGPT--- 350 (396)
T ss_dssp HHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEECCT---------------TCCHHHHHHHHHHHHCBCCBCCCGGG---
T ss_pred HHHHHHHHHHHC-CCeeccCCccccCCceEEEEcCC---------------CCCHHHHHHHHHHhCCEEEecCcccc---
Confidence 999999999887 77777653212233 44554421 23467888888776799999876432
Q ss_pred hHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHhhhhcccCcccccccc
Q 043646 466 GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITF-PYYMSNEEFEFILAALEFIAAYGHRFLPLYHFNVKAG 537 (625)
Q Consensus 466 ~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~-~~~~t~edid~ll~aL~~~~~~~~~~~~~y~~~~~~~ 537 (625)
.++++||++ ++.++++|+++++++|++++++. .+.|.|+++++
T Consensus 351 --------------------------~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~---~~~~~~~~~~~ 394 (396)
T 2ch1_A 351 --------------------------FGKAWRVGIMGECSTVQKIQFYLYGFKESLKAT---HPDYIFEESNG 394 (396)
T ss_dssp --------------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH---CTTCCCC----
T ss_pred --------------------------CCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHh---CccEEeccccC
Confidence 248899999 66779999999999999998753 47799998874
No 20
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=100.00 E-value=9.4e-33 Score=296.34 Aligned_cols=362 Identities=14% Similarity=0.123 Sum_probs=266.6
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQ 157 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (625)
..|+...+..+.++.|.+++.+.+.. + ......+..+++++++++++|.+.++.++++ +|+++++..++
T Consensus 13 ~~~~~~pgp~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~-~sgt~al~~~~ 81 (411)
T 3nnk_A 13 SRLLMGPGPINADPRVLRAMSSQLIG-----Q-----YDPAMTHYMNEVMALYRGVFRTENRWTMLVD-GTSRAGIEAIL 81 (411)
T ss_dssp CCEEESSSCCCCCHHHHHHHTSCCCC-----T-----TCHHHHHHHHHHHHHHHHHHTCCCSEEEEEE-SCHHHHHHHHH
T ss_pred cceeecCCCCCCCHHHHHHhhccccc-----c-----ccHHHHHHHHHHHHHHHHHhCCCCCcEEEEC-CCcHHHHHHHH
Confidence 34777777777888998888654311 1 2234557889999999999999866347887 45666677777
Q ss_pred HHhcccccchhhhhhhhccCCCCceEEEEcCCCCch--hHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCe
Q 043646 158 EVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHS--NLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPM 235 (625)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s--~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~ 235 (625)
.++ +++||+ |+++...|++ ....++..|++++.++.+.++.+|+++|++++++ .+++
T Consensus 82 ~~~---------------~~~gd~--Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----~~~~ 140 (411)
T 3nnk_A 82 VSA---------------IRPGDK--VLVPVFGRFGHLLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKR----IRPR 140 (411)
T ss_dssp HHH---------------CCTTCE--EEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH----HCCS
T ss_pred HHh---------------cCCCCE--EEEecCCchHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhh----CCCe
Confidence 766 578886 8888999988 5566777899999999988889999999999984 2799
Q ss_pred EEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 236 lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
+|++++++|+||.+.|+++|+++|++||+++|+|++++.+..++++... ++|++++|+||++++|.|+|++++++++
T Consensus 141 ~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~---~~d~~~~s~~K~l~~~~g~g~~~~~~~~ 217 (411)
T 3nnk_A 141 LLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVW---GLDAVSAGMQKCLGGPSGTSPITLSARM 217 (411)
T ss_dssp EEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTT---TCSEEECCSTTTTCCCSSEEEEEECHHH
T ss_pred EEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhcc---CCcEEEecCccccCCCCceEEEEECHHH
Confidence 9999999999999999999999999999999999999998888888766 7899999999998888899999999887
Q ss_pred cc-cC---CCCCcccCCceEEeeccccccccccccc-------hhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHH
Q 043646 316 YQ-LG---SSPPSTCGGGTVNYVNAFDEKDTLYLED-------IEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKK 382 (625)
Q Consensus 316 ~~-l~---~~~p~~~ggg~v~~~~~~~~~~~~~~~~-------~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~ 382 (625)
.. +. .+.+.+.|++....... .....+++. ...++..++++..+... +++..+ ...|.+.+.+
T Consensus 218 ~~~~~~~~~~~~~~~g~~~~gg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~g~~~~~~ 293 (411)
T 3nnk_A 218 EEAIRRRKCVEEGIRTDAHRDGDEE--MIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLI--LQEGLDYGIA 293 (411)
T ss_dssp HHHHHTTCCCCGGGCCTTCCCCSSC--CCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHH--HHHCHHHHHH
T ss_pred HHHHhhcccccccccccccccccCC--CCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHH--HHhhHHHHHH
Confidence 32 11 12233333332110000 000011110 02345667877776654 344443 4557889999
Q ss_pred HHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC
Q 043646 383 QEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA 462 (625)
Q Consensus 383 ~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~ 462 (625)
+.+.+++++.+.|.++ +++++.+.......++.|.+ +. +++..++.+.|.+++||.+++|....
T Consensus 294 ~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~~--------------~~~~~~l~~~l~~~~gi~v~~g~~~~ 357 (411)
T 3nnk_A 294 RHKLHGDALVKGIQAM-GLETFGDLKHKMNNVLGVVI-PQ--------------GINGDQARKLMLEDFGIEIGTSFGPL 357 (411)
T ss_dssp HHHHHHHHHHHHHHHT-TCCBCSCGGGBCSSEEEEEC-CT--------------TCCHHHHHHHHHHHHSEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHHc-CCEeCCCcccccccEEEEEC-CC--------------CCCHHHHHHHHHHhcCeEEeCccCCC
Confidence 9999999999999887 78777653222334455544 21 23467899988777799999773210
Q ss_pred chhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHhh
Q 043646 463 GPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITF-PYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~-~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.++++||++ ++.++++|+++++++|++++.+.
T Consensus 358 -----------------------------~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 390 (411)
T 3nnk_A 358 -----------------------------HGKVWRIGTMGYNARKDCVMTTLSALEAVLNYL 390 (411)
T ss_dssp -----------------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred -----------------------------CCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHc
Confidence 247999998 77789999999999999998763
No 21
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=100.00 E-value=6.7e-33 Score=296.00 Aligned_cols=350 Identities=16% Similarity=0.134 Sum_probs=259.7
Q ss_pred ceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 043646 77 RLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRL 156 (625)
Q Consensus 77 ~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l 156 (625)
..+|+|+.+.++.++.+.+++.+.+.. + ++....+..+++++++++++|.++++++++| +|+++++..+
T Consensus 33 ~~~~l~~~~~~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t-~g~t~al~~~ 101 (393)
T 1vjo_A 33 PSRLLLGPGPSNAHPSVLQAMNVSPVG-----H-----LDPAFLALMDEIQSLLRYVWQTENPLTIAVS-GTGTAAMEAT 101 (393)
T ss_dssp CCCEECSSSCCCCCHHHHHHHSSCCCC-----T-----TSHHHHHHHHHHHHHHHHHHTCCCSCEEEES-SCHHHHHHHH
T ss_pred ccceeccCCCCCCCHHHHHHHhccccc-----c-----cCHHHHHHHHHHHHHHHHHhCCCCCcEEEEe-CchHHHHHHH
Confidence 357999999999999999998765531 1 2234567889999999999999643268998 6788888888
Q ss_pred HHHhcccccchhhhhhhhccCCCCceEEEEcCCCCch--hHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 157 QEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHS--NLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s--~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
+.++ +++||+ |+++.+.|++ +...++..|++++.++++.++.+|+++|++++++. ++
T Consensus 102 ~~~~---------------~~~gd~--Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~----~~ 160 (393)
T 1vjo_A 102 IANA---------------VEPGDV--VLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETH----RP 160 (393)
T ss_dssp HHHH---------------CCTTCE--EEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH----CC
T ss_pred HHhc---------------cCCCCE--EEEEcCChhHHHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhhC----Cc
Confidence 8876 467885 8888899988 66677788999999999888889999999999831 78
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecc
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKA 314 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~ 314 (625)
++|++++++||||.+.|+++|.++|+++|+++|+|++++.|..++++... ++|++++|+||++++|+++|+++++++
T Consensus 161 ~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~---~~di~~~s~sK~l~~~~~~G~l~~~~~ 237 (393)
T 1vjo_A 161 AILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAW---GVDLAYSCSQKGLGCSPGASPFTMSSR 237 (393)
T ss_dssp SEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTT---TCSEEECCSSSTTCSCSSCEEEEECHH
T ss_pred eEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCccccc---CccEEEEcCcccccCCCceEEEEECHH
Confidence 99999999999999999999999999999999999999988777776654 789999999999999999999999988
Q ss_pred ccc-cCC----CCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHH
Q 043646 315 LYQ-LGS----SPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVY 387 (625)
Q Consensus 315 ~~~-l~~----~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l 387 (625)
+.. +.. ..+...+.. +.. .+. ...++..|+++..... .++++.+ ...+.+.+.++.+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~---~~~-------~~~--~~~~~~~g~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~ 303 (393)
T 1vjo_A 238 AIEKLQRRRTKVANWYLDMN---LLG-------KYW--GSERVYHHTAPINLYYALREALRLI--AQEGLANCWQRHQKN 303 (393)
T ss_dssp HHHHHHTCSSCCSCSTTCHH---HHH-------HHH--STTCCCCSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCceecCcH---hhh-------hhh--ccCCCCCCCCCHHHHHHHHHHHHHH--HHccHHHHHHHHHHH
Confidence 632 111 111111100 000 000 0112333466655443 3444443 345778889999999
Q ss_pred HHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhH
Q 043646 388 IESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGH 467 (625)
Q Consensus 388 ~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~ 467 (625)
++++.+.|.++ +++++.+.......++.+.+ +. +.+..++.+.|.+++||.+++|..|.
T Consensus 304 ~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~~--------------~~~~~~~~~~l~~~~gi~v~~g~~~~----- 362 (393)
T 1vjo_A 304 VEYLWERLEDI-GLSLHVEKEYRLPTLTTVCI-PD--------------GVDGKAVARRLLNEHNIEVGGGLGEL----- 362 (393)
T ss_dssp HHHHHHHHHHT-TCCBSSCGGGBCSSEEEEEC-CT--------------TCCHHHHHHHHHHHHCEECEECCGGG-----
T ss_pred HHHHHHHHHHc-CCcccCCccccCCcEEEEEc-CC--------------CCCHHHHHHHHHhhCCEEEecCcccc-----
Confidence 99999999887 77776653211123444443 21 13467888888776699999887543
Q ss_pred hhhcCChhhHHHHHHHHHhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHH
Q 043646 468 TLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITF-PYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 468 ~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~-~~~~t~edid~ll~aL~~~~ 520 (625)
.++++||++ ++.++++++++++++|++++
T Consensus 363 ------------------------~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 363 ------------------------AGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp ------------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred ------------------------CCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 248999995 56678888999999999875
No 22
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=100.00 E-value=1.9e-32 Score=290.83 Aligned_cols=346 Identities=12% Similarity=0.134 Sum_probs=255.3
Q ss_pred ccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC-CcEEEeCChHHHHHHHHHHH
Q 043646 81 ADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA-DAIIFCGAGTTAAIKRLQEV 159 (625)
Q Consensus 81 ld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~-~~vift~sGttaal~~l~~~ 159 (625)
+-+.+..+.++.+.+++.+.+.. + .+....+..+++++++++++|++.+ +++++| +|+++++. ++..
T Consensus 5 ~~~~gp~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~-~g~t~al~-~~~~ 72 (384)
T 3zrp_A 5 LLHVGPTTIKEDVLVAGLENNVG-----F-----TSKEFVEALAYSLKGLRYVMGASKNYQPLIIP-GGGTSAME-SVTS 72 (384)
T ss_dssp -CCSSCSCCCHHHHHHTTCCSCC-----T-----TSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEE-SCHHHHHH-HGGG
T ss_pred eccCCCCCCCHHHHHHhhccccc-----c-----ccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEc-CCcHHHHH-HHHh
Confidence 33445567788888888665421 1 2344577889999999999999872 379998 67777787 6554
Q ss_pred hcccccchhhhhhhhccCCCCceEEEEcCCCCchhH--HHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEE
Q 043646 160 MGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL--LSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLG 237 (625)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv 237 (625)
+ +++||+ |+++...|++.. ...+..|++++.++++.++.+|+++|++++++ .++++|
T Consensus 73 ~---------------~~~gd~--vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----~~~~~v 131 (384)
T 3zrp_A 73 L---------------LKPNDK--ILVVSNGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRK----SEYKLV 131 (384)
T ss_dssp G---------------CCTTCE--EEEECSSHHHHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHH----SCEEEE
T ss_pred h---------------cCCCCE--EEEecCCcchHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHh----CCCcEE
Confidence 4 578885 888888887742 23355799999999998889999999999984 379999
Q ss_pred EEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccc
Q 043646 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQ 317 (625)
Q Consensus 238 ~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~ 317 (625)
++++++||||.+.|+++|.++|++||+++|+|++++.+..+.++..+ ++|++++|+||++++|.|+|++++++++..
T Consensus 132 ~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~ 208 (384)
T 3zrp_A 132 ALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEW---NVDVYLTASQKALGSAAGLGLLLLSPKALS 208 (384)
T ss_dssp EEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTT---TCSEEEEETTSTTCCCSSEEEEEECHHHHH
T ss_pred EEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCcccccccc---CCCEEEecCcccccCCCceEEEEECHHHHH
Confidence 99999999999999999999999999999999999999888887765 789999999999988888999999988732
Q ss_pred cCCC-CCcccCCceEEeeccccccccccccchhhhhc------CCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHH
Q 043646 318 LGSS-PPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN------GGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVYI 388 (625)
Q Consensus 318 l~~~-~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~------~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~ 388 (625)
.+ .+....+ +..+...+. .....++ .|+++...... +++.+. +..+.+.+.++.+.++
T Consensus 209 --~~~~~~~~~~--------~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~ 275 (384)
T 3zrp_A 209 --ILDSQNSIAG--------YYLDLRNWL-PVMRGAEEGKAAYFATPPVHVILQLAEAFRLI--EKEGIENRIKRHTMVA 275 (384)
T ss_dssp --HHHHCCCSCC--------STTCHHHHH-HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHH
T ss_pred --HhcCCCCCCc--------ccccHHHHH-HHHHhhcccCCCcCCCCCHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHH
Confidence 22 1111000 000000110 1111222 25777666543 444444 4567889999999999
Q ss_pred HHHHHhhCCCCcEEEeCCCCCCCcc-eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhH
Q 043646 389 ESALGRILPNQNIQVLGNTSVKRQA-ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGH 467 (625)
Q Consensus 389 ~~l~~~L~~l~gv~v~~~~~~~~~~-i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~ 467 (625)
+++.+.|.++ +++++.+....+.+ ++.|.+ ++ .+..++.+.|.+ +||.+++|..|.
T Consensus 276 ~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~~~~~l~~-~gi~v~~g~~~~----- 332 (384)
T 3zrp_A 276 SAIRAGLEAL-GLEIVARRPESYSNTVTGVIL-KV---------------ADPQKVLAGTVN-EGVEFAPGVHPA----- 332 (384)
T ss_dssp HHHHHHHHHT-TCCBSCSSGGGBCSSEEEEEC-SS---------------SCHHHHHHHHHT-TTCCCEECCCTT-----
T ss_pred HHHHHHHHHC-CCeEccCcccccCccEEEEEC-CC---------------CCHHHHHHHHHH-CCEEEecCCCCC-----
Confidence 9999999988 88877654222334 444444 21 246788999976 599999876542
Q ss_pred hhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 468 TLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 468 ~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.+++||+++.+++++|+++++++|++++.+.
T Consensus 333 -------------------------~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~ 363 (384)
T 3zrp_A 333 -------------------------FKYFRIGHMGWVTPNDAIIAISVIERTLRKL 363 (384)
T ss_dssp -------------------------CCEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------cCEEEEeccccCCHHHHHHHHHHHHHHHHHc
Confidence 1789999999999999999999999998764
No 23
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=100.00 E-value=4e-32 Score=285.01 Aligned_cols=340 Identities=16% Similarity=0.064 Sum_probs=255.9
Q ss_pred eccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHH
Q 043646 80 YADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEV 159 (625)
Q Consensus 80 Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~ 159 (625)
|+.+++.+++++.+.+++.+.+.. + .++...+...++++++++++|++++ ++++| +|+++++..++.+
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~l~~~la~~~g~~~~-~i~~~-~g~t~a~~~~~~~ 70 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQLH-----H-----RTEAAREVFLKARGLLREAFRTEGE-VLILT-GSGTLAMEALVKN 70 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCCC-----T-----TSHHHHHHHHHHHHHHHHHHTCSSE-EEEEE-SCHHHHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhccCCCC-----c-----cCHHHHHHHHHHHHHHHHHhCCCCc-eEEEc-CchHHHHHHHHHh
Confidence 777888889999999999876631 1 2344567788999999999999764 89998 6788888888887
Q ss_pred hcccccchhhhhhhhccCCCCceEEEEcCCCCchhH--HHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEE
Q 043646 160 MGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL--LSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLG 237 (625)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv 237 (625)
+ +++||+ |+++..+|+++. ..++..|++++.++++.++.+|+++|++ +++++|
T Consensus 71 ~---------------~~~gd~--vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~--------~~~~~v 125 (352)
T 1iug_A 71 L---------------FAPGER--VLVPVYGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVAK--------EGYAGL 125 (352)
T ss_dssp H---------------CCTTCE--EEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTSCC--------SSCSEE
T ss_pred c---------------cCCCCe--EEEEeCCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHhc--------cCCcEE
Confidence 6 468885 999999999975 2234579999999998888889888765 268999
Q ss_pred EEecccCccccccCHHHHHHHHHHc--CCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 238 SFSACSNVTGIYSDTRSIARLLHQY--GGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 238 ~~~~~~n~TG~~~~l~~I~~la~~~--g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
++++++||||.+.|+++|.++|++| |+++|+|++++.+..++++..+ ++|++++|+|||+++|.|+|+++++++.
T Consensus 126 ~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~~~~~g~G~~~~~~~~ 202 (352)
T 1iug_A 126 LLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAM---GVDAAASGSQKGLMCPPGLGFVALSPRA 202 (352)
T ss_dssp EEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGG---TCSEEEEESSSTTCCCSCEEEEEECHHH
T ss_pred EEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCcceecccc---CeeEEEecCcccccCCCceeEEEECHHH
Confidence 9999999999999999999999999 9999999999988777776654 6899999999988888889999999887
Q ss_pred cccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 043646 316 YQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALG 393 (625)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~ 393 (625)
. +.+.+ ++.. .+...+......+...++++..... .++++.+ +.. .+.+.++.+++++++.+
T Consensus 203 ~--~~~~~---~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~-~~~~~~~~~~~~~~l~~ 266 (352)
T 1iug_A 203 L--ERLKP---RGYY--------LDLARELKAQKEGESAWTPAINLVLAVAAVLEEV--LPR-LEEHLALKAWQNALLYG 266 (352)
T ss_dssp H--HTCCC---CSST--------TCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH--GGG-HHHHHHHHHHHHHHHHH
T ss_pred H--HHhhC---CCce--------eeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHH
Confidence 3 33333 1110 0001111111223445677666543 3445443 333 77888899999999999
Q ss_pred hhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCC
Q 043646 394 RILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFD 473 (625)
Q Consensus 394 ~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~ 473 (625)
.|+++ +++++.+. ....++.|.+.. +++..++.+.|.+ +||.+++|..+.
T Consensus 267 ~L~~~-g~~~~~~~--~~~~~~~~~~~~---------------~~~~~~~~~~l~~-~gi~v~~~~~~~----------- 316 (352)
T 1iug_A 267 VGEEG-GLRPVPKR--FSPAVAAFYLPE---------------GVPYARVKEAFAQ-RGAVIAGGQGPL----------- 316 (352)
T ss_dssp HHHHT-TCEESCSS--BCTTCEEEECCT---------------TCCHHHHHHHHHT-TTEECEECCGGG-----------
T ss_pred HHHHC-CCcccccc--cCCeEEEEEcCC---------------CCCHHHHHHHHHH-CCEEEEeCCCcc-----------
Confidence 99887 88887652 133455555421 1346788898866 599999876321
Q ss_pred hhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 474 QTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 474 ~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.++++||+++.+++++|+++++++|++++++.
T Consensus 317 ------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 317 ------------------KGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp ------------------TTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 24889999999999999999999999987653
No 24
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=100.00 E-value=7.1e-33 Score=291.72 Aligned_cols=350 Identities=13% Similarity=0.083 Sum_probs=256.2
Q ss_pred eccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHH
Q 043646 80 YADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEV 159 (625)
Q Consensus 80 Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~ 159 (625)
|+.+.+..+.|+.+.+++.+.+.. +..+.+..+....+..+++++++++++|.+.++++++| +|+++++..++.+
T Consensus 6 ~~~~p~p~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~-~g~t~al~~~~~~ 80 (362)
T 3ffr_A 6 IYFTPGPSELYPTVRQHMITALDE----KIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFL-ASATEIWERIIQN 80 (362)
T ss_dssp EEECSSSCCCCTTHHHHHHHHHHT----TTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEE-SCHHHHHHHHHHH
T ss_pred eeccCCCcCCCHHHHHHHHHHhcC----CccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEe-CCchHHHHHHHHh
Confidence 566666677888999888777643 11011123455678899999999999998654479998 6788889988887
Q ss_pred hcccccchhhhhhhhccCCCCceEEEEcCCCCchh--HHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEE
Q 043646 160 MGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN--LLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLG 237 (625)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~--~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv 237 (625)
+ .++ + +++....|++. ....+..|++++.++.+.++.+|+++|+ ++ +++++|
T Consensus 81 l---------------~~~--~--~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~--~~-----~~~~~v 134 (362)
T 3ffr_A 81 C---------------VEK--K--SFHCVNGSFSKRFYEFAGELGREAYKEEAAFGKGFYPADIT--VP-----ADAEII 134 (362)
T ss_dssp H---------------CSS--E--EEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCGGGCC--CC-----TTCCEE
T ss_pred c---------------cCC--c--EEEEcCcHHHHHHHHHHHHhCCCeEEEecCCCCCCCHHHHh--cc-----CCccEE
Confidence 7 344 2 44444445542 2234567999999999888889999998 43 689999
Q ss_pred EEecccCccccccCHHHHHHHHHHc-CCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecccc
Q 043646 238 SFSACSNVTGIYSDTRSIARLLHQY-GGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALY 316 (625)
Q Consensus 238 ~~~~~~n~TG~~~~l~~I~~la~~~-g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~ 316 (625)
++++++||||.+.|+++|+++|++| |+++|+|++++.+..++++. .+|++++|+||++++|.|+|++++++++
T Consensus 135 ~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~~~~-----~~d~~~~s~~K~~~~~~G~g~~~~~~~~- 208 (362)
T 3ffr_A 135 CLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFDWT-----KIDSVFFSVQKCFGLPAGLGVWILNDRV- 208 (362)
T ss_dssp EEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCCCTT-----SCSEEEEETTSTTCCCSCCEEEEEEHHH-
T ss_pred EEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcccChh-----HCcEEEEecccccCCCCceEEEEECHHH-
Confidence 9999999999999999999999999 99999999999988777664 3799999999999988889999999887
Q ss_pred ccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Q 043646 317 QLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVYIESALGR 394 (625)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~l~~~ 394 (625)
++.+.+...||+...+. .+...+..........++++..+... +++.++ ...|.+.+.++.+.+++++.+.
T Consensus 209 -~~~~~~~~~gg~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~ 281 (362)
T 3ffr_A 209 -IEKSKALLAKRKSIGTY----HTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDM--LQISADGIRKQTEEKAALINTY 281 (362)
T ss_dssp -HHHHHHHHHTTCCCCST----TSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHhhhccccCCCCccc----ccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHH--HHccHHHHHHHHHHHHHHHHHH
Confidence 33343444444432111 11111222222233367777766543 444443 3456889999999999999999
Q ss_pred hCCCCcEEEeCCCCC-CCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCC
Q 043646 395 ILPNQNIQVLGNTSV-KRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFD 473 (625)
Q Consensus 395 L~~l~gv~v~~~~~~-~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~ 473 (625)
|.++|+++++.+... ....+++|.+.. +..++.+.|.+ +||.+++|..|.
T Consensus 282 L~~~~g~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~-~gi~~~~g~~~~----------- 332 (362)
T 3ffr_A 282 IESSKVFSFGVEDAKLRSMTTIVANTTM-----------------LPGEINKILEP-FDMAVGAGYGSK----------- 332 (362)
T ss_dssp HHHCSSEEESSSCGGGBCSSEEEEEESS-----------------CHHHHHHHHGG-GTEEEEECSGGG-----------
T ss_pred HHHccCceeccCChhhcCCceEEEecCC-----------------CHHHHHHHHHH-CCeEEecCcccc-----------
Confidence 999999999874322 234555555432 26688999976 499999886442
Q ss_pred hhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 474 QTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 474 ~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.++++|||++.+++++|+++++++|++++
T Consensus 333 ------------------~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 333 ------------------KETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp ------------------TTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 24899999999999999999999999764
No 25
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=100.00 E-value=1.3e-32 Score=293.06 Aligned_cols=356 Identities=13% Similarity=0.102 Sum_probs=258.9
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQE 158 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (625)
.|+.+.+..+.++.|.+++.+.+.. + ......+...++++++++++|.+.++.|++| +|+++++..++.
T Consensus 24 ~~~~~p~p~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~-~gg~~al~~~~~ 92 (393)
T 3kgw_A 24 RLLLGPGPSNLAPRVLAAGSLRMIG-----H-----MQKEMLQIMEEIKQGIQYVFQTRNPLTLVVS-GSGHCAMETALF 92 (393)
T ss_dssp CEECSSSCCCCCHHHHHHTTCCCCC-----T-----TSHHHHHHHHHHHHHHHHHHTCCCSEEEEES-CCTTTHHHHHHH
T ss_pred ceeccCCCCCCCHHHHHHhcccccC-----c-----ccHHHHHHHHHHHHHHHHHhCCCCCcEEEEe-CCcHHHHHHHHH
Confidence 3667777777888988888653311 1 1233457788999999999999765458888 555666777777
Q ss_pred HhcccccchhhhhhhhccCCCCceEEEEcCCCCchh--HHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeE
Q 043646 159 VMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN--LLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPML 236 (625)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~--~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~l 236 (625)
++ +++||+ |+++.+.|++. ....+..|++++.++++.++.+|+++|++++++ .++++
T Consensus 93 ~~---------------~~~gd~--vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~----~~~~~ 151 (393)
T 3kgw_A 93 NL---------------LEPGDS--FLTGTNGIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQ----HKPVL 151 (393)
T ss_dssp HH---------------CCTTCE--EEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH----HCCSE
T ss_pred hc---------------CCCCCE--EEEEeCCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhh----CCCcE
Confidence 66 578886 77777777543 445667899999999988889999999999984 27999
Q ss_pred EEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecccc
Q 043646 237 GSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALY 316 (625)
Q Consensus 237 v~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~ 316 (625)
|++++++||||.+.|+++|.++|++||+++|+|++++.+..++++... ++|++++|+||++++|.|+|++++++++.
T Consensus 152 v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~---~~d~~~~s~sK~~~~~~g~g~~~~~~~~~ 228 (393)
T 3kgw_A 152 LFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQ---GIDIMYSSSQKVLNAPPGISLISFNDKAK 228 (393)
T ss_dssp EEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTT---TCCEEEEESSSTTCCCSSCEEEEECHHHH
T ss_pred EEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccchhhc---CCCEEEecCcccccCCCceeEEEECHHHH
Confidence 999999999999999999999999999999999999988888777665 78999999999998888899999998873
Q ss_pred ccCCCCCcccCCceEEeecccccccc---cccc-chhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHH
Q 043646 317 QLGSSPPSTCGGGTVNYVNAFDEKDT---LYLE-DIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVYIES 390 (625)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~---~~~~-~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~ 390 (625)
+ .+.+...++.. +..+.. .++. ....++..++++..+... ++++.. +..+.+.+.++.++++++
T Consensus 229 ~--~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~ 298 (393)
T 3kgw_A 229 Y--KVYSRKTKPVS------FYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALI--AEQGLENCWRRHREATAH 298 (393)
T ss_dssp H--HHHTCSSCCSC------STTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHH
T ss_pred H--HHhccCCCCCc------eeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHH
Confidence 2 22111111111 000000 0000 012234567777666543 334433 456788899999999999
Q ss_pred HHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhh
Q 043646 391 ALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLL 470 (625)
Q Consensus 391 l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l 470 (625)
+.+.|.++ +++++.+....+.+.+.+...+. +.+..++.+.|.+++||.+++|..+.
T Consensus 299 l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~gi~v~~g~~~~-------- 355 (393)
T 3kgw_A 299 LHKHLQEM-GLKFFVKDPEIRLPTITTVTVPA--------------GYNWRDIVSYVLDHFSIEISGGLGPT-------- 355 (393)
T ss_dssp HHHHHHHT-TCCBSSSSGGGBCSSEEEEECCT--------------TBCHHHHHHHHHHHHCEECBCCCGGG--------
T ss_pred HHHHHHHc-CCeeccCChhhcCCeEEEEeCCC--------------CCCHHHHHHHHHHhCCEEEeCCcccC--------
Confidence 99999888 78776543233445544333331 23467889888776699999876432
Q ss_pred cCChhhHHHHHHHHHhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHhh
Q 043646 471 AFDQTRSLEIRSAIQKGYLGVKPGWTRITF-PYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 471 ~~~~~~~~~~~~~~~~g~~g~~~g~iRis~-~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.++++||++ ++.++++|+++++++|++++++.
T Consensus 356 ---------------------~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 388 (393)
T 3kgw_A 356 ---------------------EERVLRIGLLGYNATTENVDRVAEALREALQHC 388 (393)
T ss_dssp ---------------------TTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHS
T ss_pred ---------------------CCCEEEEEecccCCCHHHHHHHHHHHHHHHHhh
Confidence 248999998 66679999999999999998764
No 26
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=100.00 E-value=5e-32 Score=300.28 Aligned_cols=412 Identities=17% Similarity=0.140 Sum_probs=268.7
Q ss_pred cccccccCCCCC-CCCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcc
Q 043646 35 TCSEFKNDHHPP-HSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDS 113 (625)
Q Consensus 35 ~~~~~~~~~~~~-~~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~ 113 (625)
.++...+...+| ...+.++.++.+++.+... .... ...|+++..++..|..+...+... +.|++...+
T Consensus 72 ~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~------~p~~~~~~~~~~~~~~~~~~~l~~----~~n~~~~~~ 140 (515)
T 2jis_A 72 EELKQLLDLELRSQGESQKQILERCRAVIRYS-VKTG------HPRFFNQLFSGLDPHALAGRIITE----SLNTSQYTY 140 (515)
T ss_dssp HHHHHHHCCCCCSSCCCHHHHHHHHHHHHHHS-CCTT------STTEESSSCCCCCHHHHHHHHHHH----HHCCCTTCT
T ss_pred HHHHhhcccCCCCCCCCHHHHHHHHHHHhcCC-CCCC------CCCeEEEeeCCCCHHHHHHHHHHH----HhccCCCch
Confidence 344444556666 4477888888888765432 1111 224999999998888777644332 236665445
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccC-CCC----ceEEEEcC
Q 043646 114 YVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLR-DEE----RWVVFLGP 188 (625)
Q Consensus 114 ~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~-~gd----~~~Vlv~~ 188 (625)
..++...+++.++++++++++|.+.+ .++||++||.+++..+..++....+ .++ +|+ +.+|+++.
T Consensus 141 ~~s~~~~~le~~~~~~la~l~g~~~~-~~~~t~ggtea~~~al~~ar~~~~~---------~~~~~G~~~~~~~~vl~s~ 210 (515)
T 2jis_A 141 EIAPVFVLMEEEVLRKLRALVGWSSG-DGIFCPGGSISNMYAVNLARYQRYP---------DCKQRGLRTLPPLALFTSK 210 (515)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCSSC-EEEEESSHHHHHHHHHHHHHHHHCT---------THHHHCGGGSCCEEEEEET
T ss_pred hhchHHHHHHHHHHHHHHHHhCCCCC-CeEEcCCcHHHHHHHHHHHHHHHhh---------HHhhcCccccCCeEEEECC
Confidence 56777889999999999999999855 7999965565544443332210000 011 243 34699999
Q ss_pred CCCchhHHHHHHcCC---eEEEEecCCCCCCCHHHHHHHHHHhhhCC-CCeEEEEecccCccccccCHHHHHHHHHHcCC
Q 043646 189 YEHHSNLLSWRQSLA---EVVEIGLDDNGLLDIEALRSQLELYKAAK-RPMLGSFSACSNVTGIYSDTRSIARLLHQYGG 264 (625)
Q Consensus 189 ~~h~s~~~~~~~~G~---~vv~v~~~~~~~ld~~~L~~~l~~~~~~~-~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~ 264 (625)
.+|+++..+++..|. +++.||++.++.+|+++|+++|+++...+ +|++|++++++|+||.+.|+++|+++|++||+
T Consensus 211 ~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~ 290 (515)
T 2jis_A 211 ECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGL 290 (515)
T ss_dssp TSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTC
T ss_pred CccHHHHHHHHHcCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC
Confidence 999999999998888 99999998889999999999998533222 58999999999999999999999999999999
Q ss_pred EEEEeccCcCCCcccc-----CCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecc--ccc--cCCCCCcccCCceEEeec
Q 043646 265 FACFDFAASGPYVKIN-----LRSRNIDGYDAIFLATHKFLGGPGTPGILLISKA--LYQ--LGSSPPSTCGGGTVNYVN 335 (625)
Q Consensus 265 ~vivD~A~~~g~~~id-----~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~--~~~--l~~~~p~~~ggg~v~~~~ 335 (625)
|+|+|+|++.+....+ +.. ..++|++++++|||+++|.|+|+++++++ +.+ .....++..+++.. +..
T Consensus 291 ~l~vD~a~~~~~~~~~~~~~~~~g--~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~-~~~ 367 (515)
T 2jis_A 291 WLHVDAAWGGSVLLSQTHRHLLDG--IQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKF-YDV 367 (515)
T ss_dssp EEEEEETTGGGGGGCTTTGGGGTT--GGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CC-SCG
T ss_pred eEEEehhhhhHHHhChhhHhhcCC--CccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCccc-ccc
Confidence 9999999998877654 222 13789999999999999999999999987 421 11123333333220 000
Q ss_pred cccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceE
Q 043646 336 AFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAIL 415 (625)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~ 415 (625)
.+.. ..+.-...++ .+ .+.+ .+++..+ ...|++.+.++...+++++.+.|.++|+++++.+. ..+++
T Consensus 368 ~~~~--~~~~~~~~rr--~~---al~~-~~~l~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~---~~~~v 434 (515)
T 2jis_A 368 ALDT--GDKVVQCGRR--VD---CLKL-WLMWKAQ--GDQGLERRIDQAFVLARYLVEEMKKREGFELVMEP---EFVNV 434 (515)
T ss_dssp GGCC--GGGCSCSSCC--CC---HHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCC---SSSEE
T ss_pred cCCC--CCCCCCCCCc--cc---HHHH-HHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC---CeeEE
Confidence 0000 0000000011 11 1111 1223332 34567888899999999999999999999998763 45778
Q ss_pred EEEeccCCCCCCccccccCCCCCChHH-----------HHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHH
Q 043646 416 SFLVYSTTNSSPENMKIERNKPLHGPF-----------VATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAI 484 (625)
Q Consensus 416 ~f~~~~~~~~~~~~~~~~~~~~l~~~~-----------v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~ 484 (625)
+|...+... ++. .+..+ +.+.|.+ .|+...+ . .. +.+
T Consensus 435 ~f~~~p~~~---------~~~-~~~~~~~~~l~~~~~~l~~~l~~-~G~~~~~------~-~~-~~~------------- 482 (515)
T 2jis_A 435 CFWFVPPSL---------RGK-QESPDYHERLSKVAPVLKERMVK-EGSMMIG------Y-QP-HGT------------- 482 (515)
T ss_dssp EEEECCGGG---------TTC-TTSTTHHHHHHTHHHHHHHHHHH-HTSCEEE------E-EE-ETT-------------
T ss_pred EEEEeCccc---------ccc-ccchhHHHHHHHHHHHHHHHHHh-cCCEEEE------E-EE-ECC-------------
Confidence 887754210 000 00112 3344433 3433211 0 00 000
Q ss_pred HhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHh
Q 043646 485 QKGYLGVKPGWTRITF-PYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 485 ~~g~~g~~~g~iRis~-~~~~t~edid~ll~aL~~~~~~ 522 (625)
.++++|+++ ++++|++|+++++++|++++++
T Consensus 483 -------~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 483 -------RGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp -------EEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred -------ceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 137899999 8999999999999999988654
No 27
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=100.00 E-value=4.3e-32 Score=291.62 Aligned_cols=330 Identities=15% Similarity=0.124 Sum_probs=244.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEE-EeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCch--
Q 043646 117 QRMTKMVHEASNYIKRCLGGGQADAII-FCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHS-- 193 (625)
Q Consensus 117 ~~~~~~~~~~~~~ia~~~g~~~~~~vi-ft~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s-- 193 (625)
....+..+++++++++++|.+++ .++ ++ +|+++++..++.++ +++||+ |+++.+.|++
T Consensus 40 ~~~~~~~~~l~~~la~~~g~~~~-~~~~~~-~s~t~al~~~~~~l---------------~~~gd~--Vl~~~~~~~~~~ 100 (416)
T 3isl_A 40 PAFTGIMNETMEMLRELFQTKNR-WAYPID-GTSRAGIEAVLASV---------------IEPEDD--VLIPIYGRFGYL 100 (416)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCS-EEEEEE-SCHHHHHHHHHHHH---------------CCTTCE--EEEEESSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC-cEEEec-CcHHHHHHHHHHHh---------------cCCCCE--EEEecCCcccHH
Confidence 44577889999999999999866 454 77 56667788777766 578886 8888889988
Q ss_pred hHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCc
Q 043646 194 NLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAAS 273 (625)
Q Consensus 194 ~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~ 273 (625)
.....+..|++++.++++.++.+|+++|++++++ +++++|++++++||||.+.|+++|.++|++||+++|+|++|+
T Consensus 101 ~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~ 176 (416)
T 3isl_A 101 LTEIAERYGANVHMLECEWGTVFDPEDIIREIKK----VKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVAT 176 (416)
T ss_dssp HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH----HCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTT
T ss_pred HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhh----CCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCcc
Confidence 4445677899999999998889999999999984 378999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccc-cCCCC------------CcccCCceEEeecccccc
Q 043646 274 GPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQ-LGSSP------------PSTCGGGTVNYVNAFDEK 340 (625)
Q Consensus 274 ~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~-l~~~~------------p~~~ggg~v~~~~~~~~~ 340 (625)
.+..++++..+ ++|++++|+||++++|.|+|++++++++.. +...+ +...||..+. .+..+
T Consensus 177 ~~~~~~~~~~~---~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~---~~~~~ 250 (416)
T 3isl_A 177 IGGCEVKVDEW---KIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPIT---SNYFD 250 (416)
T ss_dssp TTTSCCCTTTT---TCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC------------------CCCCS---CSTTC
T ss_pred ccCCCcchhhc---CCCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchhccCCCCCC---ccccc
Confidence 99888888766 789999999999888989999999988732 11111 1122222110 00000
Q ss_pred ccccccc-hhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEE
Q 043646 341 DTLYLED-IEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSF 417 (625)
Q Consensus 341 ~~~~~~~-~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f 417 (625)
...+... ...++..++++...... +++... +..|.+.+.++.+.+++++.+.|.++ +++++.+.......++.|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~ 327 (416)
T 3isl_A 251 LSQLEDYWSERRLNHHTEATTMLYALREGVRLV--LEEGLETRFERHRHHEAALAAGIKAM-GLRLFGDDSCKMPVVTCV 327 (416)
T ss_dssp HHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCTTEEEE
T ss_pred hHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCccccCCcEEEE
Confidence 0000000 13345677877766543 344443 45578899999999999999999885 888776642222345555
Q ss_pred EeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEE
Q 043646 418 LVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTR 497 (625)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iR 497 (625)
.+..+ .+..++.+.|.+++||.+++|.... .++++|
T Consensus 328 ~~~~~---------------~~~~~l~~~L~~~~gi~v~~g~~~~-----------------------------~~~~iR 363 (416)
T 3isl_A 328 EIPGG---------------IDGESVRDMLLAQFGIEIASSFGPL-----------------------------AGKIWR 363 (416)
T ss_dssp ECCTT---------------CCHHHHHHHHHHHHCEECBCCCSTT-----------------------------TTTEEE
T ss_pred eCCCC---------------CCHHHHHHHHHHhCCEEEecCCCCC-----------------------------CCCEEE
Confidence 54321 3467899999776799999775321 248999
Q ss_pred EecCCCCCHHH-HHHHHHHHHHHHHh
Q 043646 498 ITFPYYMSNEE-FEFILAALEFIAAY 522 (625)
Q Consensus 498 is~~~~~t~ed-id~ll~aL~~~~~~ 522 (625)
|+++.+++++| +++++++|++++.+
T Consensus 364 i~~~~~~~~~e~i~~~~~~l~~~~~~ 389 (416)
T 3isl_A 364 IGTMGYSCRKENVLFVLAGLEAVLLR 389 (416)
T ss_dssp EECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred EecccCCCcHHHHHHHHHHHHHHHHH
Confidence 99977777777 99999999998876
No 28
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=100.00 E-value=3.9e-31 Score=291.89 Aligned_cols=409 Identities=14% Similarity=0.087 Sum_probs=266.5
Q ss_pred CCC-CChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHH
Q 043646 46 PHS-KPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVH 124 (625)
Q Consensus 46 ~~~-~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~ 124 (625)
|+. .+.++.++++++.+......+.+ ..|||+.++++.++.+++++..... |++...+..+....++.+
T Consensus 74 p~~~~~~~~~~~~~~~~~~~~~~~~~~------~~yl~~~~~~~~~~~v~~~~~~~~~----n~~~~~~~~~~~~~~le~ 143 (497)
T 2qma_A 74 DNKNAPLKSVIDDVAELVAKNAIFTQH------PDCIAHLHTPPLMPAVAAEAMIAAL----NQSMDSWDQASSATYVEQ 143 (497)
T ss_dssp SSCCCCHHHHHHHHHHHTTTTSCCTTS------TTBCSSSCCCCBHHHHHHHHHHHHH----CCCTTCGGGCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCC------CCeeEeCCCCCcHHHHHHHHHHHhh----cccccchhhChHHHHHHH
Confidence 444 78899999999877554333333 2599999999999999998876653 333333445567788889
Q ss_pred HHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhh-hhccCC-CCceEEEEcCCCCchhHHHHHHcC
Q 043646 125 EASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKL-ITSLRD-EERWVVFLGPYEHHSNLLSWRQSL 202 (625)
Q Consensus 125 ~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~-~~~l~~-gd~~~Vlv~~~~h~s~~~~~~~~G 202 (625)
++++++++++|.++.+.++||++|+.+++..+..+............+ ..++.+ .++.+|+++..+|+++..+++..|
T Consensus 144 ~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g 223 (497)
T 2qma_A 144 KVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMG 223 (497)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcC
Confidence 999999999999763489999555555443333321000000000000 001111 022369999999999999998887
Q ss_pred C---eEEEEecCCCCCCCHHHHHHHHHHhhhCC-CCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCcc
Q 043646 203 A---EVVEIGLDDNGLLDIEALRSQLELYKAAK-RPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVK 278 (625)
Q Consensus 203 ~---~vv~v~~~~~~~ld~~~L~~~l~~~~~~~-~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~ 278 (625)
. +++.||++.++.+|+++|+++|++....+ ++.+|++++++|+||.+.|+++|+++|++||+|+|+|+|++.+..+
T Consensus 224 ~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~ 303 (497)
T 2qma_A 224 LGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALIL 303 (497)
T ss_dssp SCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGG
T ss_pred CCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHh
Confidence 6 89999998889999999999998532211 2458999999999999999999999999999999999999987765
Q ss_pred ccCCCC--CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCC
Q 043646 279 INLRSR--NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGT 356 (625)
Q Consensus 279 id~~~~--~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt 356 (625)
.+++.. +.+++|++++|+|||+++|.++|+++++++.. +..+ ...... ..........+. ..... ++
T Consensus 304 ~~~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~-~~~~---~~~~~y---l~~~~~~~~~~~---~~~~~-~~ 372 (497)
T 2qma_A 304 SSHKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSN-FKFL---LHHADY---LNREHDELPNLV---DKSIA-TT 372 (497)
T ss_dssp STTGGGGTTGGGCSEEEEETTTTTCCCSSCEEEEESCGGG-GGGG---CC--------------------------C-CS
T ss_pred CcchHhhcCcccCCEEEEcchhccCCCcceEEEEEeCHHH-HHHh---cCCchh---cCCccccCCCcc---ccCCC-CC
Confidence 552211 12367999999999999999999999987652 1111 111000 000000000000 00000 11
Q ss_pred hhHHHH-HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCC
Q 043646 357 PQIVQM-IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERN 435 (625)
Q Consensus 357 ~~~~~~-~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~ 435 (625)
..+.++ +.+++..+ ...|++.+.++...+++++.+.|+++++++++.+. +.++++|...+..
T Consensus 373 r~~~al~~~~~l~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~---~~~~v~f~~~~~~------------ 435 (497)
T 2qma_A 373 KRFDALKVFMTMQNV--GPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEP---SLSTVLFRATHET------------ 435 (497)
T ss_dssp CCCTHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCC---SSSEEEEEECCSS------------
T ss_pred CchhHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCC---CceEEEEEEcCCc------------
Confidence 000011 11223322 34466788888999999999999999999997653 5678888875421
Q ss_pred CCCC--hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEec-CCCCCHHHHHHH
Q 043646 436 KPLH--GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITF-PYYMSNEEFEFI 512 (625)
Q Consensus 436 ~~l~--~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~-~~~~t~edid~l 512 (625)
...+ ...+.+.|.+ .|+.+.++.... ..+++||++ ++++|++|++++
T Consensus 436 ~~~~~l~~~l~~~l~~-~G~~~~~~~~~~-----------------------------g~~~lRis~~~~~~t~edi~~~ 485 (497)
T 2qma_A 436 ADLDELNKALRLEALT-RGIAVLGETIVD-----------------------------GKTALKFTILNPCLTTSDFESL 485 (497)
T ss_dssp SCHHHHHHHHHHHHHH-HTSCBCEEEEET-----------------------------TEEEEEEECCCTTCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh-CCCEEEEeeEEC-----------------------------CEEEEEEEecCCCCCHHHHHHH
Confidence 0000 1245555644 476664321110 137899998 899999999999
Q ss_pred HHHHHHHHHh
Q 043646 513 LAALEFIAAY 522 (625)
Q Consensus 513 l~aL~~~~~~ 522 (625)
+++|++++.+
T Consensus 486 ~~~l~~~~~~ 495 (497)
T 2qma_A 486 LSKINMLAVE 495 (497)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988765
No 29
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=100.00 E-value=2.2e-31 Score=291.94 Aligned_cols=417 Identities=8% Similarity=0.041 Sum_probs=274.8
Q ss_pred cccccccccCCCCCCC-CChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchH-HHHHHHHHhhCCCCCCCCC
Q 043646 33 RQTCSEFKNDHHPPHS-KPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLR-YIEDYIINNVLPFYGNTHT 110 (625)
Q Consensus 33 ~~~~~~~~~~~~~~~~-~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~-~v~ea~~~~l~~~~~n~~~ 110 (625)
.+.++..+++..+|+. .+.++.++++++.+......+.+| + |+.+-.++..++ .+.+.+...+ |+..
T Consensus 34 ~p~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p---~---~~~~~~~~~~~~~~~~~~l~~~~-----n~~~ 102 (475)
T 3k40_A 34 KPGYLKPLIPDAAPEKPEKWQDVMQDIERVIMPGVTHWHSP---K---FHAYFPTANSYPAIVADMLSGAI-----ACIG 102 (475)
T ss_dssp CTTCSGGGSCSSCCSSCCCHHHHHHHHHHHTGGGCCCTTCT---T---BCCSSCCCCCHHHHHHHHHHHHH-----CCCS
T ss_pred CHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhccCCCCCCc---C---ceeeCCCCCcHHHHHHHHHHHHh-----Cccc
Confidence 3455666777777766 888999999999875544445554 4 444433343333 4444444444 3333
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhCCCCC--------CcEEEeCChHHHHHHHHHHHhcccccchhhhh---h-hhccCC
Q 043646 111 SDSYVGQRMTKMVHEASNYIKRCLGGGQA--------DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDK---L-ITSLRD 178 (625)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~ia~~~g~~~~--------~~vift~sGttaal~~l~~~l~~~~~~~~~~~---~-~~~l~~ 178 (625)
..+..++..+++.+++.+++++++|.+.+ ...+||++||.+++..+..++....+. .+.. + ..++.+
T Consensus 103 ~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~-~~~~~~~~~~~~~~~ 181 (475)
T 3k40_A 103 FTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKE-VKELHPEWDEHTILG 181 (475)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHH-HHHHCTTSCHHHHHH
T ss_pred cCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHH-hhccCcccccccccC
Confidence 34556788899999999999999999753 157888788888777776654211000 0000 0 000112
Q ss_pred CCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC-CCeEEEEecccCccccccCHHHHHH
Q 043646 179 EERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK-RPMLGSFSACSNVTGIYSDTRSIAR 257 (625)
Q Consensus 179 gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~-~~~lv~~~~~~n~TG~~~~l~~I~~ 257 (625)
+.+|+++..+|+|+..+++..|++++.||+++++ +|+++|+++|++..... .|++|++++++|+||.+.|+++|++
T Consensus 182 --~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~ 258 (475)
T 3k40_A 182 --KLVGYCSDQAHSSVERAGLLGGVKLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGP 258 (475)
T ss_dssp --HEEEEEETTSCHHHHHHHHHHTCEEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHH
T ss_pred --CeEEEECCCchHHHHHHHHHcCCceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHH
Confidence 2469999999999999999999999999999889 99999999998643222 3788999999999999999999999
Q ss_pred HHHHcCCEEEEeccCcCCCccc-cCCCC--CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCC--CCcccCCceEE
Q 043646 258 LLHQYGGFACFDFAASGPYVKI-NLRSR--NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSS--PPSTCGGGTVN 332 (625)
Q Consensus 258 la~~~g~~vivD~A~~~g~~~i-d~~~~--~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~--~p~~~ggg~v~ 332 (625)
+|++||+|+|+|+|++.+.... ..+.. +.+.+|++++++|||+++|.|+|++++++.....+.+ .+.+.......
T Consensus 259 la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~ 338 (475)
T 3k40_A 259 VGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQG 338 (475)
T ss_dssp HHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC-----------------
T ss_pred HHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCCcCC
Confidence 9999999999999998764322 11111 1135699999999999999999999998764210111 11111110000
Q ss_pred eeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCc
Q 043646 333 YVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQ 412 (625)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~ 412 (625)
...+......+.+.+.-...+.+++..+ ...|++.+.++.+++++++.+.|+++|+++++.+. ..
T Consensus 339 ----------~~~~~~~~~~~~sr~~~~l~l~~al~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~---~~ 403 (475)
T 3k40_A 339 ----------SAPDYRHWQIPLGRRFRALKLWFVLRLY--GVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEI---NM 403 (475)
T ss_dssp --------------------CCCGGGTHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCC---BT
T ss_pred ----------CCCCcccccccCCCcccHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC---ce
Confidence 0000001112223221111123344443 45678889999999999999999999999998764 57
Q ss_pred ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCC
Q 043646 413 AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVK 492 (625)
Q Consensus 413 ~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~ 492 (625)
++++|.+.+.. ....++.+.|+++..+.+.++... .
T Consensus 404 ~iv~f~~~~~~--------------~~~~~l~~~L~~~g~~~~~~~~~~------------------------------g 439 (475)
T 3k40_A 404 GLVCFRLKGSN--------------ERNEALLKRINGRGHIHLVPAKIK------------------------------D 439 (475)
T ss_dssp TEEEEEESSCH--------------HHHHHHHHHHHHHTSCBCEEEEET------------------------------T
T ss_pred EEEEEEeCCch--------------HHHHHHHHHHHhCCcEEEEeeEEC------------------------------C
Confidence 88888875321 113577888876533333322111 1
Q ss_pred CcEEEEecC-CCCCHHHHHHHHHHHHHHHHhh
Q 043646 493 PGWTRITFP-YYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 493 ~g~iRis~~-~~~t~edid~ll~aL~~~~~~~ 523 (625)
..++|+++. +.+|++||++++++|++++++.
T Consensus 440 ~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~ 471 (475)
T 3k40_A 440 VYFLRMAICSRFTQSEDMEYSWKEVSAAADEM 471 (475)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 378999985 6679999999999999987653
No 30
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=100.00 E-value=1.9e-30 Score=286.82 Aligned_cols=426 Identities=13% Similarity=0.109 Sum_probs=272.1
Q ss_pred ccccccc---cCCCCCCC-CChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHH-HHHHhhCCCCCCC
Q 043646 34 QTCSEFK---NDHHPPHS-KPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIED-YIINNVLPFYGNT 108 (625)
Q Consensus 34 ~~~~~~~---~~~~~~~~-~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~e-a~~~~l~~~~~n~ 108 (625)
+.++..+ +...+|.. .+.++.++.+++.+... ..+.+ ..|+++..++..|..+.. .+...+ |+
T Consensus 52 p~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~------p~~~~~~~~~~~~~~~~~~~l~~~~-----n~ 119 (504)
T 2okj_A 52 PHQLLEGMEGFNLELSDHPESLEQILVDCRDTLKYG-VRTGH------PRFFNQLSTGLDIIGLAGEWLTSTA-----NT 119 (504)
T ss_dssp HHHHHSCBTTBCCCCCSSCCCHHHHHHHHHHHHHTS-CCTTC------TTEESSSSCCCCHHHHHHHHHHHHH-----CC
T ss_pred HHHHHHHhhccCCCCCCCCCCHHHHHHHHHHHhhcc-CCCCC------CCEEEEccCCCCHHHHHHHHHHHhh-----cc
Confidence 3444454 56666644 78889999998766433 21222 238888888887776654 333322 44
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHhCCCC-CCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCC----CceE
Q 043646 109 HTSDSYVGQRMTKMVHEASNYIKRCLGGGQ-ADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDE----ERWV 183 (625)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~-~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~g----d~~~ 183 (625)
+...+..+.....+.+++++++++++|.+. .+.++||++||.+++..+..+.....+. + ..+| ++.+
T Consensus 120 ~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~-----~---~~~G~~~~~~~~ 191 (504)
T 2okj_A 120 NMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPE-----V---KTKGMAAVPKLV 191 (504)
T ss_dssp BSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTT-----H---HHHCGGGSCCEE
T ss_pred CCCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhH-----H---hhcCccccCCeE
Confidence 433455566778888999999999999973 2379999555555444333322110000 0 0123 2336
Q ss_pred EEEcCCCCchhHHHHHHcCC---eEEEEecCCCCCCCHHHHHHHHHHhhhCC-CCeEEEEecccCccccccCHHHHHHHH
Q 043646 184 VFLGPYEHHSNLLSWRQSLA---EVVEIGLDDNGLLDIEALRSQLELYKAAK-RPMLGSFSACSNVTGIYSDTRSIARLL 259 (625)
Q Consensus 184 Vlv~~~~h~s~~~~~~~~G~---~vv~v~~~~~~~ld~~~L~~~l~~~~~~~-~~~lv~~~~~~n~TG~~~~l~~I~~la 259 (625)
|+++..+|+++..+++..|. +++.||++.++.+|+++|+++|+++...+ +|++|++++++|+||.+.|+++|+++|
T Consensus 192 v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la 271 (504)
T 2okj_A 192 LFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADIC 271 (504)
T ss_dssp EEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHH
T ss_pred EEECCcchHHHHHHHHHcCCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHH
Confidence 99999999999999988776 89999998889999999999998533222 589999999999999999999999999
Q ss_pred HHcCCEEEEeccCcCCCcc-----ccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecc-ccc--cCCCCCcccCCceE
Q 043646 260 HQYGGFACFDFAASGPYVK-----INLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKA-LYQ--LGSSPPSTCGGGTV 331 (625)
Q Consensus 260 ~~~g~~vivD~A~~~g~~~-----id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~-~~~--l~~~~p~~~ggg~v 331 (625)
++||+|+|+|+|++.+... ..+.. ..++|++++++|||+++|.++|+++++++ +.. +....++..+++..
T Consensus 272 ~~~g~~lhvD~a~~~~~~~~~~~~~~~~g--~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~ 349 (504)
T 2okj_A 272 EKYNLWLHVDAAWGGGLLMSRKHRHKLNG--IERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQ 349 (504)
T ss_dssp HHHTCEEEEEETTGGGGGGCTTTGGGGTT--GGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCS
T ss_pred HHcCCEEEEehhhhhHHHhCHhhHhhcCC--cccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCccc
Confidence 9999999999998877643 22221 13689999999999999999999999874 421 11233444333320
Q ss_pred EeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCC
Q 043646 332 NYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKR 411 (625)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~ 411 (625)
+...++ ...+ .++.....++..+. +++..+ ...|++.+.++...+++++.+.|.++|+++++.+. ...
T Consensus 350 -~~~~~~--~~~~--~~~~~rr~~~l~~~----a~l~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-~p~ 417 (504)
T 2okj_A 350 -YDVSYD--TGDK--AIQCGRHVDIFKFW----LMWKAK--GTVGFENQINKCLELAEYLYAKIKNREEFEMVFNG-EPE 417 (504)
T ss_dssp -SCGGGC--CGGG--SSCSSCBCCHHHHH----HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSS-CCS
T ss_pred -ccCcCC--cccC--CCCCCCCccHHHHH----HHHHHh--hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecC-CCC
Confidence 000000 0000 00111111222221 223332 34567888889999999999999999999998732 136
Q ss_pred cceEEEEeccCCCCCCc-cccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCC
Q 043646 412 QAILSFLVYSTTNSSPE-NMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLG 490 (625)
Q Consensus 412 ~~i~~f~~~~~~~~~~~-~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g 490 (625)
.++++|...+....... .........-....+.+.|.+ .|+.+.++..+. +
T Consensus 418 ~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~G~~~~~~~~~~--------~------------------- 469 (504)
T 2okj_A 418 HTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMME-SGTTMVGYQPQG--------D------------------- 469 (504)
T ss_dssp SSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHH-HTSCEEEEEEET--------T-------------------
T ss_pred eEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHh-CCcEEEEeeEEC--------C-------------------
Confidence 78888887542100000 000000000002457777765 475332211110 0
Q ss_pred CCCcEEEEecC-CCCCHHHHHHHHHHHHHHHHh
Q 043646 491 VKPGWTRITFP-YYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 491 ~~~g~iRis~~-~~~t~edid~ll~aL~~~~~~ 522 (625)
.++++|++++ +++|++|+++++++|++++++
T Consensus 470 -~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 501 (504)
T 2okj_A 470 -KANFFRMVISNPAATQSDIDFLIEEIERLGQD 501 (504)
T ss_dssp -EEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred -ceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1368999996 999999999999999988765
No 31
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=100.00 E-value=1.3e-30 Score=284.31 Aligned_cols=399 Identities=11% Similarity=0.021 Sum_probs=267.5
Q ss_pred cccccCCCCC-CCCChHHHHHHHHHhhc-CCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcch
Q 043646 37 SEFKNDHHPP-HSKPSEEKLAWLRSQII-GNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSY 114 (625)
Q Consensus 37 ~~~~~~~~~~-~~~~~~~~~~~lr~~~~-~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~ 114 (625)
...+++..+| ...+.++.++.+++.+. .....+++| .|+. ++.++.+.+++.+.+.....+ +.
T Consensus 10 ~~~~~~~~lp~~g~~~~~v~~~~~~~~~~~~~~~~~~~------~f~~----~~~~~~v~e~~~~a~~~~~~~-----~~ 74 (452)
T 2dgk_A 10 STIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLA------TFCQ----TWDDENVHKLMDLSINKNWID-----KE 74 (452)
T ss_dssp -----CCSCCCSCCCHHHHHHHHHHHGGGSCCCTTBCS------CCSC----CCCCHHHHHHHHHTTTCBTTC-----TT
T ss_pred hhhccCCCCCCCCCCHHHHHHHHHHHhcCCCCCccCCC------CeeC----CCchHHHHHHHHHHhccCCCC-----hh
Confidence 3445556666 44888899999998773 222223332 1221 345567888887776432222 22
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCC----cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCC---CceEEEEc
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQAD----AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDE---ERWVVFLG 187 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~----~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~g---d~~~Vlv~ 187 (625)
.++...++.+++++++++++|.+.+. .+++| +|+++++..++.++... ++.+. ..+| ++++|+++
T Consensus 75 ~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t-~ggtea~~~al~a~~~~----~~~~~---~~~G~~~~~~~vi~~ 146 (452)
T 2dgk_A 75 EYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNT-IGSSEACMLGGMAMKWR----WRKRM---EAAGKPTDKPNLVCG 146 (452)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEE-SSHHHHHHHHHHHHHHH----HHHHH---HHTTCCCSCCEEEES
T ss_pred hChhHHHHHHHHHHHHHHHhCCCcccccCCceEEe-CCHHHHHHHHHHHHHHH----HHHHH---HhcCCCCCCcEEEEC
Confidence 34667889999999999999998652 38888 45555555554443100 00000 0133 33369999
Q ss_pred CCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHc----
Q 043646 188 PYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQY---- 262 (625)
Q Consensus 188 ~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~---- 262 (625)
. .|.++...++..|++++.||+++ ++.+|+++|+++|+ ++|++|++++++|+||.+.|+++|+++|+++
T Consensus 147 ~-~h~~~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~-----~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~ 220 (452)
T 2dgk_A 147 P-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACD-----ENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADT 220 (452)
T ss_dssp S-CCHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCC-----TTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHH
T ss_pred C-CcHHHHHHHHHcCceEEEEecCCCCCeECHHHHHHHHh-----hCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhcc
Confidence 9 99999999999999999999987 78999999999997 5789999999999999999999999999996
Q ss_pred --CCEEEEeccCcCCCcc-------ccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCC--CCcccCCceE
Q 043646 263 --GGFACFDFAASGPYVK-------INLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSS--PPSTCGGGTV 331 (625)
Q Consensus 263 --g~~vivD~A~~~g~~~-------id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~--~p~~~ggg~v 331 (625)
|+|+|+|+|++.+..+ .++. ..++|++++++|||+++|.++|+++++++....+.+ .+.+.++...
T Consensus 221 ~~~~~l~vD~a~~~~~~~~~~~~~~~~~~---~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (452)
T 2dgk_A 221 GIDIDMHIDAASGGFLAPFVAPDIVWDFR---LPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIG 297 (452)
T ss_dssp CCCCCEEEECTTGGGTHHHHCTTCCCSTT---STTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECCTTCCEE
T ss_pred CCCCcEEEEcccHHHHHHhhCccchhhcC---CCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHHhccCccccCCCCC
Confidence 9999999998875432 2332 247999999999999889999999997652100111 1222222110
Q ss_pred EeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCC-
Q 043646 332 NYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTS- 408 (625)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~- 408 (625)
.+ ...++.+....+ .+++..+ ...|++.+.++...+++++.+.|.++++++++.+..
T Consensus 298 ~~------------------~~~~~r~~~~~~~~~aal~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~ 357 (452)
T 2dgk_A 298 TF------------------AINFSRPAGQVIAQYYEFLRL--GREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRP 357 (452)
T ss_dssp EC------------------CSCCSCBCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCT
T ss_pred Cc------------------ccCCCChhHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCC
Confidence 00 011232221111 2333333 345677888899999999999999998899886421
Q ss_pred CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCC
Q 043646 409 VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGY 488 (625)
Q Consensus 409 ~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~ 488 (625)
....++++|.+.+.. ...++..++.+.|.+ .||.++...... . +.
T Consensus 358 ~~~~~~v~f~~~~~~-----------~~~~~~~~l~~~L~~-~Gi~v~~~~~~~---~---~~----------------- 402 (452)
T 2dgk_A 358 DEGIPAVCFKLKDGE-----------DPGYTLYDLSERLRL-RGWQVPAFTLGG---E---AT----------------- 402 (452)
T ss_dssp TTBSSEEEEEECTTC-----------CCSCCHHHHHHHHHH-TTCBCCEEECST---T---CT-----------------
T ss_pred CCCeEEEEEEecCcc-----------cccCCHHHHHHHHHh-cCCeeeeeeCCc---c---cC-----------------
Confidence 136688888774321 012345689999965 699876422111 0 00
Q ss_pred CCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 489 LGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 489 ~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
..+++||+++.++|++|+++++++|++++....+
T Consensus 403 ---~~~~lRis~~~~~t~e~id~li~~l~~~~~~~~~ 436 (452)
T 2dgk_A 403 ---DIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD 436 (452)
T ss_dssp ---TCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CeEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1478999999999999999999999998876544
No 32
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=100.00 E-value=1.4e-31 Score=280.48 Aligned_cols=344 Identities=13% Similarity=0.062 Sum_probs=251.2
Q ss_pred ccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC-CCCcEEEeCChHHHHHHHHHHH
Q 043646 81 ADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG-QADAIIFCGAGTTAAIKRLQEV 159 (625)
Q Consensus 81 ld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~-~~~~vift~sGttaal~~l~~~ 159 (625)
+.+++..+.|+.|.+++.+.+.. + .++...+...++++++++++|.+ +.+++++| +|+++++..++.+
T Consensus 3 ~~~~gp~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t-~g~t~a~~~~~~~ 71 (353)
T 2yrr_A 3 LLTPGPTPIPERVQKALLRPMRG-----H-----LDPEVLRVNRAIQERLAALFDPGEGALVAALA-GSGSLGMEAGLAN 71 (353)
T ss_dssp ECSSSSCCCCHHHHGGGGSCCCC-----T-----TCHHHHHHHHHHHHHHHHHHCCCTTCEEEEES-SCHHHHHHHHHHT
T ss_pred cCCCCCCCCCHHHHHHHhccccc-----c-----cCHHHHHHHHHHHHHHHHHhCCCCCCceEEEc-CCcHHHHHHHHHH
Confidence 44555677888888888665532 2 23445677899999999999986 23378998 7888888888776
Q ss_pred hcccccchhhhhhhhccCCCCceEEEEcCCCCchh--HHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEE
Q 043646 160 MGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN--LLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLG 237 (625)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~--~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv 237 (625)
+ ++ |+ |+++..+|+++ ....+..|++++.++.++++.+|+++|++++++ .++++|
T Consensus 72 ~---------------~~--d~--vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~----~~~~~v 128 (353)
T 2yrr_A 72 L---------------DR--GP--VLVLVNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKR----RRYRMV 128 (353)
T ss_dssp C---------------SC--CC--EEEEECSHHHHHHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHH----SCCSEE
T ss_pred h---------------cC--Cc--EEEEcCCCchHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHh----CCCCEE
Confidence 5 23 54 88888888885 233456799999999988888999999999983 278999
Q ss_pred EEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccc
Q 043646 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQ 317 (625)
Q Consensus 238 ~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~ 317 (625)
++++++||||.+.|+++|.++|++||+++|+|++++.+..++++..+ ++|++++|+||++++|.|+|++++++++.
T Consensus 129 ~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~~~~~g~G~~~~~~~~~- 204 (353)
T 2yrr_A 129 ALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFSMRAM---GVDYAFTGSQKCLSAPPGLAPIAASLEAR- 204 (353)
T ss_dssp EEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHH---TCSEEECCTTSTTCCCSSCEEEEECHHHH-
T ss_pred EEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCccccccccccccc---CceEEEecCcccccCCCceEEEEECHHHH-
Confidence 99999999999999999999999999999999999888776666554 67999999999988888899999999873
Q ss_pred cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhh
Q 043646 318 LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGRI 395 (625)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L 395 (625)
+.+.. ..+. ..+...+..........++++..... .++++.+ +..|.+.+.++.+++++++.+.|
T Consensus 205 -~~l~~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L 271 (353)
T 2yrr_A 205 -KAFTG-KRGW---------YLDLARVAEHWERGGYHHTTPVLLHYALLEALDLV--LEEGVAARERRAREVYAWVLEEL 271 (353)
T ss_dssp -HHCCC-CSCS---------TTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHH
T ss_pred -HHhcc-CCCc---------cccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHH
Confidence 22321 0000 00000000000122345666666543 3445544 34578888999999999999999
Q ss_pred CCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChh
Q 043646 396 LPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQT 475 (625)
Q Consensus 396 ~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~ 475 (625)
+++ +++++.+. .....++.|.+.. +++..++.+.|.+ .||.+++|..|.
T Consensus 272 ~~~-g~~~~~~~-~~~~~~~~~~~~~---------------~~~~~~~~~~l~~-~gi~v~~g~~~~------------- 320 (353)
T 2yrr_A 272 KAR-GFRPYPKA-SPLPTVLVVRPPE---------------GVDADRLVRALYA-EGVAVAGGIGPT------------- 320 (353)
T ss_dssp HHT-TCEESCSS-SBCTTEEEEECCT---------------TCCHHHHHHHHHH-TTEECEECCGGG-------------
T ss_pred HHC-CCccccCc-cCCCeEEEEECCC---------------CCCHHHHHHHHHH-CCEEEeCCcccc-------------
Confidence 887 88887642 1123344454421 2346788988866 599999887542
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHH-HHHHHHHHHHHh
Q 043646 476 RSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFE-FILAALEFIAAY 522 (625)
Q Consensus 476 ~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid-~ll~aL~~~~~~ 522 (625)
.++++||+++.+++++|++ +++++|++++.+
T Consensus 321 ----------------~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 321 ----------------RGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp ----------------TTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred ----------------CCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 2478999998888999999 999999988754
No 33
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=100.00 E-value=4.9e-31 Score=279.65 Aligned_cols=350 Identities=11% Similarity=0.042 Sum_probs=249.3
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQE 158 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (625)
.|+-+.+..+.|+.|.+++.+.+.. + .+....+..+++++++++++|++.+.+++|..+|+++++..++.
T Consensus 20 ~~~~~pgp~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~ 89 (376)
T 3f0h_A 20 MLNFTVGPVMSSEEVRAIGAEQVPY-----F-----RTTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVM 89 (376)
T ss_dssp CEECSSSSCCCCHHHHHHHTSCCCC-----C-----SSHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHH
T ss_pred ceeecCCCCCCcHHHHHHhcCCCCC-----C-----CCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHH
Confidence 3444555677788999988665421 1 12345678899999999999997644566633677778888887
Q ss_pred HhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH--HHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeE
Q 043646 159 VMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL--LSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPML 236 (625)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~l 236 (625)
++ +++||+ |+++...+++.. ......|++++.++.+.++.+|+++|+++++ +++++
T Consensus 90 ~~---------------~~~gd~--vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~-----~~~~~ 147 (376)
T 3f0h_A 90 NC---------------FTKKDK--VLVIDGGSFGHRFVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDN-----QNFTG 147 (376)
T ss_dssp HH---------------CCTTCC--EEEEESSHHHHHHHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTT-----SCCCE
T ss_pred hc---------------cCCCCe--EEEEeCChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhc-----cCceE
Confidence 76 578887 666655444433 2345579999999998888899999998775 68999
Q ss_pred EEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecccc
Q 043646 237 GSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALY 316 (625)
Q Consensus 237 v~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~ 316 (625)
|++++++|+||.+.|+++|+++|++||+++|+|++++.+..++++..+ ++|++++|+||++++|.|+|++++++++.
T Consensus 148 v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~---~~d~~~~s~~K~l~~~~G~g~~~~~~~~~ 224 (376)
T 3f0h_A 148 LLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNEC---GADVMITGSQKVLACPPGISVIVLAPRGV 224 (376)
T ss_dssp EEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TCSEEEEETTTTTCCCSSCEEEEECHHHH
T ss_pred EEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCcccccccc---CccEEEecCcccccCCCceEEEEECHHHH
Confidence 999999999999999999999999999999999999998887777655 78999999999999888899999998873
Q ss_pred ccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH--HHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHH
Q 043646 317 QLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM--IRAALAFWVKEYI-GYEVIKKQEDVYIESALG 393 (625)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~--~~aal~~~~~~~~-g~~~i~~~~~~l~~~l~~ 393 (625)
. .+.+....+.. .+...+...........+++...+ +.++++++ +.. +.+.+.++.+.+++++.+
T Consensus 225 ~--~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~~l~~ 292 (376)
T 3f0h_A 225 E--RVEKSKVRTMY--------FDLKDALKNQERGQTPFTPAVGILLQINERLKEI--KKHGGADAEVARIASQAADFRA 292 (376)
T ss_dssp H--HHHTCCCCCST--------TCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHH
T ss_pred H--HhhcCCCCcee--------ecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHHHHHHH
Confidence 2 22111111100 000001111111112334555332 23445554 344 578899999999999999
Q ss_pred hhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCC
Q 043646 394 RILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFD 473 (625)
Q Consensus 394 ~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~ 473 (625)
.|.++ ++++..+. ....++.+.. + +.+..++.+.|.+++||.+++|....
T Consensus 293 ~L~~~-~~~~~~~~--~~~~~~~~~~-~---------------~~~~~~l~~~l~~~~gi~v~~g~~~~----------- 342 (376)
T 3f0h_A 293 KIKDL-PFELVSES--PANGVTSVHP-T---------------TANAYDIFLKLKDEYGIWICPNGGEM----------- 342 (376)
T ss_dssp HTTTS-SEEECCSS--BBTTEEEEEE-S---------------SSCHHHHHHHHHHHSSEECEECCGGG-----------
T ss_pred HHHHc-CCccCccc--cCceEEEEeC-C---------------CCCHHHHHHHHHHhCCEEEecCcccc-----------
Confidence 99987 67776542 1233433332 2 13467899999776699999773110
Q ss_pred hhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 474 QTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 474 ~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.++++||+++.++|++|+++++++|++++.+.
T Consensus 343 ------------------~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~~ 374 (376)
T 3f0h_A 343 ------------------KDTIFRVGHIGALTHEDNTTLVNAFKDLQKRN 374 (376)
T ss_dssp ------------------TTTCEEEECCSSCCHHHHHHHHHHHHHHHHTT
T ss_pred ------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 24889999999999999999999999988653
No 34
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.6e-30 Score=275.21 Aligned_cols=370 Identities=14% Similarity=0.027 Sum_probs=261.7
Q ss_pred CCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHH
Q 043646 48 SKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEAS 127 (625)
Q Consensus 48 ~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~ 127 (625)
..+.++.++.+++..... ..+. ...|+.++.. ++++.+.+++.+.+...+.++.. .....++.++++
T Consensus 9 ~~~~~~~~~~l~~~~~~~-~~~~------~~~~~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~-----~~~~~~~~~~l~ 75 (397)
T 3f9t_A 9 GVSEKEILEELKKYRSLD-LKYE------DGNIFGSMCS-NVLPITRKIVDIFLETNLGDPGL-----FKGTKLLEEKAV 75 (397)
T ss_dssp CCCHHHHHHHHHHHHTTS-CCGG------GTCBCSCSCC-CCCTHHHHHHHHHTTCCTTSGGG-----BHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhccC-CCCC------CCCeEEEecC-CCcHHHHHHHHHHHhhcCCCccc-----ChhHHHHHHHHH
Confidence 367788889998866432 2122 1247888754 45568899998888655555432 135678889999
Q ss_pred HHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhc--cCCCCceEEEEcCCCCchhHHHHHHcCCeE
Q 043646 128 NYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITS--LRDEERWVVFLGPYEHHSNLLSWRQSLAEV 205 (625)
Q Consensus 128 ~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~--l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~v 205 (625)
+++++++|++++ +|++| +|+++++..++.++.... +..-..+ -.+|| .|+++.++|+++...++..|+++
T Consensus 76 ~~la~~~~~~~~-~i~~~-~ggt~a~~~~~~~~~~~~----~~~~~~~~~~~~gd--~vl~~~~~~~~~~~~~~~~g~~~ 147 (397)
T 3f9t_A 76 ALLGSLLNNKDA-YGHIV-SGGTEANLMALRCIKNIW----REKRRKGLSKNEHP--KIIVPITAHFSFEKGREMMDLEY 147 (397)
T ss_dssp HHHHHHTTCTTC-EEEEE-SCHHHHHHHHHHHHHHHH----HHHHHTTCCCCSSC--EEEEETTCCTHHHHHHHHHTCEE
T ss_pred HHHHHHhCCCCC-CEEEe-cCcHHHHHHHHHHHHHHH----HhhhhhcccCCCCe--EEEECCcchhHHHHHHHHcCcee
Confidence 999999999876 88998 566666777666652100 0000000 12356 49999999999998999999999
Q ss_pred EEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccC----
Q 043646 206 VEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINL---- 281 (625)
Q Consensus 206 v~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~---- 281 (625)
+.+|.++++.+|+++|++++++ .++++|++++++|+||.+.|+++|.++|++||+++|+|++++.+..+..-
T Consensus 148 ~~v~~~~~~~~d~~~l~~~i~~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~ 223 (397)
T 3f9t_A 148 IYAPIKEDYTIDEKFVKDAVED----YDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYK 223 (397)
T ss_dssp EEECBCTTSSBCHHHHHHHHHH----SCCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGC
T ss_pred EEEeeCCCCcCCHHHHHHHHhh----cCCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccc
Confidence 9999998899999999999983 27999999999999999999999999999999999999998865432211
Q ss_pred -------CCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCC---CCcccCCceEEeeccccccccccccchhhh
Q 043646 282 -------RSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSS---PPSTCGGGTVNYVNAFDEKDTLYLEDIEER 351 (625)
Q Consensus 282 -------~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~---~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~ 351 (625)
-.... ++|++++|+||++++|.++|+++++++.. .+.+ .+...++.. .
T Consensus 224 ~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~--------------------~ 281 (397)
T 3f9t_A 224 KKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGY-KRYLDVDAPYLTETRQ--------------------A 281 (397)
T ss_dssp CTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGG-GGGTCEECTTSSSSEE--------------------C
T ss_pred cccccccccccc-cCCeEEEccccccCCCCCceEEEEeCHHH-HHhhccCCccccCCCc--------------------c
Confidence 01122 67999999999998888899999987652 1222 222222111 0
Q ss_pred hcCCChhHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCcc
Q 043646 352 ENGGTPQIVQ--MIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPEN 429 (625)
Q Consensus 352 ~~~gt~~~~~--~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~ 429 (625)
...|+++... ...++++++ ...+.+.+.++.+++++++.+.|.++ +++++.+. ..+++.|....
T Consensus 282 ~~~~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~---~~~~~~~~~~~-------- 347 (397)
T 3f9t_A 282 TILGTRVGFGGACTYAVLRYL--GREGQRKIVNECMENTLYLYKKLKEN-NFKPVIEP---ILNIVAIEDED-------- 347 (397)
T ss_dssp SSCSSCCSHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCC---SSSEEEEECTT--------
T ss_pred ccccccccchHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEcCC---CccEEEEEeCC--------
Confidence 1123322111 123334443 34556778888889999999999888 77766542 45565554321
Q ss_pred ccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHH
Q 043646 430 MKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEF 509 (625)
Q Consensus 430 ~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edi 509 (625)
..++.+.|.+ +||.+++|.. ++++||+++.+++++|+
T Consensus 348 ----------~~~~~~~l~~-~gi~v~~~~~--------------------------------~~~~Ri~~~~~~~~e~i 384 (397)
T 3f9t_A 348 ----------YKEVCKKLRD-RGIYVSVCNC--------------------------------VKALRIVVMPHIKREHI 384 (397)
T ss_dssp ----------HHHHHHHHHH-TTCBCEECSS--------------------------------SSEEEEECCTTCCHHHH
T ss_pred ----------HHHHHHHHHh-CCeEEeccCC--------------------------------CCEEEEEEcCCCCHHHH
Confidence 4578888866 5999986531 38899999999999999
Q ss_pred HHHHHHHHHHHH
Q 043646 510 EFILAALEFIAA 521 (625)
Q Consensus 510 d~ll~aL~~~~~ 521 (625)
++++++|++++.
T Consensus 385 ~~~~~~l~~~l~ 396 (397)
T 3f9t_A 385 DNFIEILNSIKR 396 (397)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 35
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=100.00 E-value=1e-31 Score=284.14 Aligned_cols=352 Identities=15% Similarity=0.122 Sum_probs=252.9
Q ss_pred CceEeccC-CCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHH-HHHHhCCCCCCcEEEeCChHHHHH
Q 043646 76 RRLTYADH-TASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNY-IKRCLGGGQADAIIFCGAGTTAAI 153 (625)
Q Consensus 76 ~~~~Yld~-~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~-ia~~~g~~~~~~vift~sGttaal 153 (625)
+..+|||+ .+.++.++.+.+++.+.+.....+.....+..+........+++++ +++++|.+ +|+|| +|+++++
T Consensus 7 ~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~---~v~~~-~g~t~a~ 82 (371)
T 2e7j_A 7 KDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD---VARVT-NGAREAK 82 (371)
T ss_dssp -CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS---EEEEE-SSHHHHH
T ss_pred CCcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC---EEEEe-CChHHHH
Confidence 46899999 5578889999999988775321100100112233445667889999 99999986 68898 7888888
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEe--cCCCCCCCHHHHHHHHHHhhhC
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIG--LDDNGLLDIEALRSQLELYKAA 231 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~--~~~~~~ld~~~L~~~l~~~~~~ 231 (625)
..++.++ +++||+ |+++.++|+++...++..|++++.++ .++++.+|+++|++++++....
T Consensus 83 ~~~~~~~---------------~~~gd~--vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 145 (371)
T 2e7j_A 83 FAVMHSL---------------AKKDAW--VVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKR 145 (371)
T ss_dssp HHHHHHH---------------CCTTCE--EEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTT
T ss_pred HHHHHHH---------------hCCCCE--EEEccCcchHHHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhccc
Confidence 8888876 467875 99999999999988998999999999 8777889999999999843211
Q ss_pred CCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEE
Q 043646 232 KRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLI 311 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v 311 (625)
+++++|++++++||||.+.|+++|.++|++||+++|+|++++.+..++++..+ ++|++++|+||++++|.++|++++
T Consensus 146 ~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~di~~~s~sK~~~~~~~~G~~~~ 222 (371)
T 2e7j_A 146 GEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEI---GADFIVGSGHKSMAASGPIGVMGM 222 (371)
T ss_dssp SCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHH---TCSEEEEEHHHHSSCCSSCEEEEE
T ss_pred CCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhc---CCCEEEecCCcCCCCCCCcEEEEE
Confidence 47899999999999999999999999999999999999999988776665554 689999999999988888999999
Q ss_pred eccccccCC-CCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHH--HH
Q 043646 312 SKALYQLGS-SPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQE--DV 386 (625)
Q Consensus 312 ~~~~~~l~~-~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~--~~ 386 (625)
++++ .+. +.+...++.. ...++.++++..+.. .++++++ +. .+.++. ++
T Consensus 223 ~~~~--~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~a~~~~l~~~--~~----~~~~~~~~~~ 276 (371)
T 2e7j_A 223 KEEW--AEIVLRRSEKYKNK------------------EVELLGCTARGATIITLMASFPHV--RE----RIKRWDEEVE 276 (371)
T ss_dssp CTTT--TTTTTCBCSSCTTS------------------BGGGTTCCCCSHHHHHHHHHHHHH--HH----HGGGHHHHHH
T ss_pred echh--hhhhccccccCccc------------------ccccccCCcCHHHHHHHHHHHHHH--HH----HHHHHHHHHH
Confidence 9887 344 4433321111 112335666655443 3444443 21 556677 78
Q ss_pred HHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhh
Q 043646 387 YIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYG 466 (625)
Q Consensus 387 l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~ 466 (625)
+++++.+.|.++ +++++.+.. .+.+++.+.+. +..++.+.|. ++||.+++ ..
T Consensus 277 ~~~~l~~~L~~~-~~~~~~~~~-~~~~~~~~~~~------------------~~~~~~~~l~-~~gi~~~~-~~------ 328 (371)
T 2e7j_A 277 KARRFAAEMEKL-GIKQLGDNP-HNHDLMFFHAE------------------VLYEISKKAK-GGRFFLYR-EL------ 328 (371)
T ss_dssp HHHHHHHHHHHT-TCEEESSSS-CCSSEEEEECH------------------HHHHHHHHSS-SGGGHHHH-HH------
T ss_pred HHHHHHHHHHHc-CcEEecCCC-ccCceEEEECC------------------CHHHHHHHHH-HCCEEEEe-cc------
Confidence 889999999887 888886531 13555555442 1457888886 57998874 11
Q ss_pred HhhhcCChhhHHHHHHHHHhCCCCCCCcEEE-EecCCC-CCHHHHHHHHHHHHHHHHh
Q 043646 467 HTLLAFDQTRSLEIRSAIQKGYLGVKPGWTR-ITFPYY-MSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 467 ~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iR-is~~~~-~t~edid~ll~aL~~~~~~ 522 (625)
.... ..|..++++| |+++.+ ++++|+++++++|++++++
T Consensus 329 -~~~~----------------~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 329 -KSRK----------------IHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK 369 (371)
T ss_dssp -HHTT----------------EECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred -cccc----------------ccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHh
Confidence 0000 0011258899 999988 9999999999999988764
No 36
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.3e-30 Score=284.46 Aligned_cols=418 Identities=10% Similarity=0.022 Sum_probs=276.1
Q ss_pred cccccccccCCCCCCC-CChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCC
Q 043646 33 RQTCSEFKNDHHPPHS-KPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHT 110 (625)
Q Consensus 33 ~~~~~~~~~~~~~~~~-~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~ 110 (625)
.+..+..+++..+|.. .+.++.++++++.+......+.+| + |+.+-.++ ..|..+.+.+...+ |...
T Consensus 39 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p---~---~~~~~~~~~~~~~~~~~~~~~~~-----n~~~ 107 (481)
T 4e1o_A 39 QPGYLRAQLPESAPEDPDSWDSIFGDIERIIMPGVVHWQSP---H---MHAYYPALTSWPSLLGDMLADAI-----NCLG 107 (481)
T ss_dssp CTTTTGGGSCSSCCSSCCCHHHHHHHHHHHTGGGCCCTTST---T---BCSSSCCCCCHHHHHHHHHHHHH-----CCCC
T ss_pred CHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCC---C---eeEeCCCCCCHHHHHHHHHHHHh-----Cccc
Confidence 3455666676666666 888999999999875444445554 3 44443333 33444555555555 2222
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhCCCCC---------CcEEEeCChHHHHHHHHHHHhcccccchhhh--hh-hhccCC
Q 043646 111 SDSYVGQRMTKMVHEASNYIKRCLGGGQA---------DAIIFCGAGTTAAIKRLQEVMGITVPSIMRD--KL-ITSLRD 178 (625)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~ia~~~g~~~~---------~~vift~sGttaal~~l~~~l~~~~~~~~~~--~~-~~~l~~ 178 (625)
..+..++..+++.+++.+++++++|.+.. ...+||++||.+++..+..++....+..... .+ ..++.+
T Consensus 108 ~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~ 187 (481)
T 4e1o_A 108 FTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNA 187 (481)
T ss_dssp SSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHT
T ss_pred CCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccC
Confidence 34556788899999999999999998753 1468887788887777766543110000000 00 001123
Q ss_pred CCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhC-CCCeEEEEecccCccccccCHHHHHH
Q 043646 179 EERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAA-KRPMLGSFSACSNVTGIYSDTRSIAR 257 (625)
Q Consensus 179 gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~-~~~~lv~~~~~~n~TG~~~~l~~I~~ 257 (625)
+ .+|+++..+|+|+.++++..|++++.||++.++.+|+++|+++|+++... ..|++|++++++|+||.+.|+++|++
T Consensus 188 ~--~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~ 265 (481)
T 4e1o_A 188 R--LVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGP 265 (481)
T ss_dssp T--EEEEEETTSCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHH
T ss_pred C--eEEEEcCcchHHHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHH
Confidence 3 46999999999999999888999999999888999999999999864322 23788999999999999999999999
Q ss_pred HHHHcCCEEEEeccCcCCCcccc-CCCC--CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCC--CCCcccCCceEE
Q 043646 258 LLHQYGGFACFDFAASGPYVKIN-LRSR--NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGS--SPPSTCGGGTVN 332 (625)
Q Consensus 258 la~~~g~~vivD~A~~~g~~~id-~~~~--~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~--~~p~~~ggg~v~ 332 (625)
+|++||+|+|+|+|++.+....+ .+.. +.+.+|++++++|||+++|.|+|++++++....... ..+.+.....
T Consensus 266 la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~-- 343 (481)
T 4e1o_A 266 ICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHAN-- 343 (481)
T ss_dssp HHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTT--
T ss_pred HHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCcc--
Confidence 99999999999999987643221 1111 122469999999999999999999999876421111 1121211100
Q ss_pred eeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCc
Q 043646 333 YVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQ 412 (625)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~ 412 (625)
......+ .......+.+.-...+.+++... ...|.+.+.++..++++++.+.|+++|+++++.+. ..
T Consensus 344 -----~~~~~~~---~~~~~~~~r~~~~l~~~~al~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~---~~ 410 (481)
T 4e1o_A 344 -----SGVATDF---MHWQIPLSRRFRSVKLWFVIRSF--GVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKR---HL 410 (481)
T ss_dssp -----TTTSCCG---GGGSSSSCCCCTHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCC---CS
T ss_pred -----cCCCCCc---ccccccCCCCccHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC---ce
Confidence 0000000 01111222221111123334433 45678888899999999999999999999998653 56
Q ss_pred ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcC-eeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCC
Q 043646 413 AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFG-IQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGV 491 (625)
Q Consensus 413 ~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~g-I~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~ 491 (625)
++++|.+.+.. ....++.+.|+++ | +.+.++...
T Consensus 411 ~~v~f~~~~~~--------------~~~~~l~~~L~~~-g~~~~~~~~~~------------------------------ 445 (481)
T 4e1o_A 411 GLVVFRLKGPN--------------SLTENVLKEIAKA-GRLFLIPATIQ------------------------------ 445 (481)
T ss_dssp SEEEEEESSCH--------------HHHHHHHHHHHHH-CSSBCEEEEET------------------------------
T ss_pred eEEEEEeCCch--------------HHHHHHHHHHHhC-CeEEEEeeEEC------------------------------
Confidence 88888774311 1135677888664 5 333321110
Q ss_pred CCcEEEEecC-CCCCHHHHHHHHHHHHHHHHhh
Q 043646 492 KPGWTRITFP-YYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 492 ~~g~iRis~~-~~~t~edid~ll~aL~~~~~~~ 523 (625)
...++|+++. +.+|++||++++++|++++++.
T Consensus 446 g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l 478 (481)
T 4e1o_A 446 DKLIIRFTVTSQFTTRDDILRDWNLIRDAATLI 478 (481)
T ss_dssp TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1378999985 5669999999999999987653
No 37
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=100.00 E-value=8.7e-30 Score=281.63 Aligned_cols=432 Identities=13% Similarity=0.127 Sum_probs=275.9
Q ss_pred ccccccc---cCCCCCCC-CChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHH-HHHHHHHhhCCCCCCC
Q 043646 34 QTCSEFK---NDHHPPHS-KPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRY-IEDYIINNVLPFYGNT 108 (625)
Q Consensus 34 ~~~~~~~---~~~~~~~~-~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~-v~ea~~~~l~~~~~n~ 108 (625)
+.++... ++..+|.. .+.++.++++++.+.. ...+.+| + |+.+-.++..++. +.+.+...+ |+
T Consensus 55 p~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~p---~---f~~~~~~~~~~~~~~~e~l~~~~-----~~ 122 (511)
T 3vp6_A 55 PHQLLEGMEGFNLELSDHPESLEQILVDCRDTLKY-GVRTGHP---R---FFNQLSTGLDIIGLAGEWLTSTA-----NT 122 (511)
T ss_dssp HHHHHHCBTTBCCCCCSSCCCHHHHHHHHHHHHHT-SCCTTST---T---EESSSSCCCCHHHHHHHHHHHHH-----CC
T ss_pred HHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHhhc-cCCCCCC---C---ceEeecCCCcHHHHHHHHHHHHh-----cc
Confidence 3444445 66677775 7888999999876643 3333333 3 5555444544444 445555555 23
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHhCCCCC-CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEc
Q 043646 109 HTSDSYVGQRMTKMVHEASNYIKRCLGGGQA-DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLG 187 (625)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~-~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~ 187 (625)
....|..++...++.+++++++++++|.+.+ ..++||++|+.+++..+..+.....+.. ++ .++...++.+|+++
T Consensus 123 ~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~-~~---~G~~~~~~~~v~~s 198 (511)
T 3vp6_A 123 NMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEV-KT---KGMAAVPKLVLFTS 198 (511)
T ss_dssp CSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHH-HH---HCGGGSCCEEEEEE
T ss_pred CCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhh-hh---cCcccCCCeEEEEC
Confidence 3234556778889999999999999999842 3788997777776655554432111000 00 01221234469999
Q ss_pred CCCCchhHHHHHHcCC---eEEEEecCCCCCCCHHHHHHHHHHhhhC-CCCeEEEEecccCccccccCHHHHHHHHHHcC
Q 043646 188 PYEHHSNLLSWRQSLA---EVVEIGLDDNGLLDIEALRSQLELYKAA-KRPMLGSFSACSNVTGIYSDTRSIARLLHQYG 263 (625)
Q Consensus 188 ~~~h~s~~~~~~~~G~---~vv~v~~~~~~~ld~~~L~~~l~~~~~~-~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g 263 (625)
...|+++..+++..|+ +++.|+++.++.+|+++|+++|++.... .+|++|++++++|+||.+.|+++|+++|++||
T Consensus 199 ~~~H~s~~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~ 278 (511)
T 3vp6_A 199 EQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYN 278 (511)
T ss_dssp TTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcC
Confidence 9999999999999888 9999999989999999999999854222 23899999999999999999999999999999
Q ss_pred CEEEEeccCcCCCccccC-CC--CCCCCCcEEEEcCCCCCCCCCCceEEEEecccc-c-c-CCCCCcccCCceEEeeccc
Q 043646 264 GFACFDFAASGPYVKINL-RS--RNIDGYDAIFLATHKFLGGPGTPGILLISKALY-Q-L-GSSPPSTCGGGTVNYVNAF 337 (625)
Q Consensus 264 ~~vivD~A~~~g~~~id~-~~--~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~-~-l-~~~~p~~~ggg~v~~~~~~ 337 (625)
+|+|+|+|++.+....+- +. .+..++|++++++||||++|.|+|++++++... . . ....++...... .+..
T Consensus 279 ~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~-~~~~-- 355 (511)
T 3vp6_A 279 LWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDK-HYDV-- 355 (511)
T ss_dssp CEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSC-SSCG--
T ss_pred CEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCccc-cccc--
Confidence 999999999987663221 10 012367999999999999999999999987531 1 1 111222211110 0000
Q ss_pred cccccccccchhhhhcCCCh-hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEE
Q 043646 338 DEKDTLYLEDIEERENGGTP-QIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILS 416 (625)
Q Consensus 338 ~~~~~~~~~~~~~~~~~gt~-~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~ 416 (625)
.+.........+.+ ..+. +.+++... ...|.+.+.++...+++++.+.|+++|+++++.+. ....++++
T Consensus 356 ------~~~~~~~~~~~~r~~~al~-~~~al~~~--g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~-~p~~~~v~ 425 (511)
T 3vp6_A 356 ------SYDTGDKAIQCGRHVDIFK-FWLMWKAK--GTVGFENQINKCLELAEYLYAKIKNREEFEMVFNG-EPEHTNVC 425 (511)
T ss_dssp ------GGCCGGGSSCSSCCCCHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSS-CCSSSCEE
T ss_pred ------ccCccCCCCCCCCchHHHH-HHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecC-CCCeEEEE
Confidence 00000111122222 1222 22334433 45678888999999999999999999999998741 23678889
Q ss_pred EEeccCCCCCCc-cccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcE
Q 043646 417 FLVYSTTNSSPE-NMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGW 495 (625)
Q Consensus 417 f~~~~~~~~~~~-~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~ 495 (625)
|...+....... .....++......++.+.|.+ .|+.+.... +... +.++
T Consensus 426 f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~G~~~~~~~----~~~~------------------------~~~~ 476 (511)
T 3vp6_A 426 FWYIPQSLRGVPDSPQRREKLHKVAPKIKALMME-SGTTMVGYQ----PQGD------------------------KANF 476 (511)
T ss_dssp EEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHH-HTSCEEEEE----EETT------------------------EEEE
T ss_pred EEEeCccccccccchhHHHHHHHHHHHHHHHHHh-cCCEEEEEE----EeCC------------------------ceEE
Confidence 887653200000 000000000002357777766 465443210 0000 1257
Q ss_pred EEEec-CCCCCHHHHHHHHHHHHHHHHhh
Q 043646 496 TRITF-PYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 496 iRis~-~~~~t~edid~ll~aL~~~~~~~ 523 (625)
+|+++ ++.++.+||++++++|+++.+..
T Consensus 477 lRi~~~~~~~t~~di~~ll~~i~~~~~~~ 505 (511)
T 3vp6_A 477 FRMVISNPAATQSDIDFLIEEIERLGQDL 505 (511)
T ss_dssp EEECCCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999 79999999999999999887654
No 38
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=100.00 E-value=2.1e-30 Score=285.26 Aligned_cols=411 Identities=12% Similarity=0.067 Sum_probs=268.6
Q ss_pred cccccccCCCCCCC-CChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcc
Q 043646 35 TCSEFKNDHHPPHS-KPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDS 113 (625)
Q Consensus 35 ~~~~~~~~~~~~~~-~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~ 113 (625)
..+...+...+|.. .+.++.++.+++.+......+.+| +...|++.+.. .+..+.+++...+ |+....+
T Consensus 36 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~~~~~~~~~--~~~~~~~~~~~~~-----n~~~~~~ 105 (486)
T 1js3_A 36 GYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSP---YFFAYFPTASS--YPAMLADMLCGAI-----GCIGFSW 105 (486)
T ss_dssp TCSGGGSCSSCCSSCCCHHHHHHHHHHTTGGGCCCTTST---TBCSSSCCCCC--HHHHHHHHHHHHH-----CCCCSSG
T ss_pred HHHHHhccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCC---CceEeCCCCCC--HHHHHHHHHHHHh-----CcCcccc
Confidence 44455565565655 778899999998764333334443 43445544322 3445777776665 3443345
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCC--------CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhcc--CCCC---
Q 043646 114 YVGQRMTKMVHEASNYIKRCLGGGQA--------DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSL--RDEE--- 180 (625)
Q Consensus 114 ~~~~~~~~~~~~~~~~ia~~~g~~~~--------~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l--~~gd--- 180 (625)
..+....++.+++++++++++|.+.+ ..++||++||.+++..+..+.. .....+ ..||
T Consensus 106 ~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~---------~~~~~~~~~~gd~~~ 176 (486)
T 1js3_A 106 AASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAART---------KVVRRLQAASPGLTQ 176 (486)
T ss_dssp GGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHH---------HHHHHHHHHSTTCCH
T ss_pred ccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHH---------HHhhhhhccCccchh
Confidence 56677888999999999999999742 2578886666665555544321 000000 0022
Q ss_pred -----ceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC-CCeEEEEecccCccccccCHHH
Q 043646 181 -----RWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK-RPMLGSFSACSNVTGIYSDTRS 254 (625)
Q Consensus 181 -----~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~-~~~lv~~~~~~n~TG~~~~l~~ 254 (625)
+.+|+++...|+++..+++..|++++.||++.++.+|+++|+++|++....+ .+.+|++++++|+||.+.|+++
T Consensus 177 ~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~ 256 (486)
T 1js3_A 177 GAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLE 256 (486)
T ss_dssp HHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHH
T ss_pred cccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHH
Confidence 3458889999999999999999999999998889999999999998542212 3469999999999999999999
Q ss_pred HHHHHHHcCCEEEEeccCcCCCccc-cCCCC--CCCCCcEEEEcCCCCCCCCCCceEEEEecccc--c-cCCCCCcccCC
Q 043646 255 IARLLHQYGGFACFDFAASGPYVKI-NLRSR--NIDGYDAIFLATHKFLGGPGTPGILLISKALY--Q-LGSSPPSTCGG 328 (625)
Q Consensus 255 I~~la~~~g~~vivD~A~~~g~~~i-d~~~~--~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~--~-l~~~~p~~~gg 328 (625)
|+++|++||+|+|+|+|++.+.... +.+.. +..++|++++++|||+++|.++|++++++... + +....++..++
T Consensus 257 I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~ 336 (486)
T 1js3_A 257 VGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHS 336 (486)
T ss_dssp HHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC---------
T ss_pred HHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchhhCCC
Confidence 9999999999999999998765433 22221 12368999999999999999999999987631 1 11111222121
Q ss_pred ceEEeeccccccccccccchhhhhcCCCh-hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCC
Q 043646 329 GTVNYVNAFDEKDTLYLEDIEERENGGTP-QIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNT 407 (625)
Q Consensus 329 g~v~~~~~~~~~~~~~~~~~~~~~~~gt~-~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~ 407 (625)
+.. . . ....+. ......+.+ ..+. +.+++... ...|++.+.++...+++++.+.|.++|+++++.+.
T Consensus 337 ~~~-~-~----~~~~~~---~~~~~~~rr~~~~~-~~~al~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~ 404 (486)
T 1js3_A 337 HQG-S-G----LITDYR---HWQLPLGRRFRSLK-MWFVFRMY--GVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV 404 (486)
T ss_dssp ----C-C----SCCCGG---GSSSCSCCCCTHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC
T ss_pred ccc-c-c----CCCCcc---ccCCCCCCchhHHH-HHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC
Confidence 110 0 0 000000 000111111 1121 12333333 34567888889999999999999999999998753
Q ss_pred CCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhC
Q 043646 408 SVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKG 487 (625)
Q Consensus 408 ~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g 487 (625)
..++++|...+.. .+ ..++.+.|.+ .|+.+.++..+.
T Consensus 405 ---~~~~v~f~~~~~~-------------~~-~~~l~~~L~~-~g~~~~~~~~~~------------------------- 441 (486)
T 1js3_A 405 ---TLGLVCFRLKGSD-------------GL-NEALLERINS-ARKIHLVPCRLR------------------------- 441 (486)
T ss_dssp ---CSSEEEEEESSCH-------------HH-HHHHHHHHHH-HTSCBCEEEEET-------------------------
T ss_pred ---ceeEEEEEecChH-------------HH-HHHHHHHHHh-cCCEEEEEEEEC-------------------------
Confidence 4678888764310 01 2567777765 465433221110
Q ss_pred CCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHhh
Q 043646 488 YLGVKPGWTRITF-PYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 488 ~~g~~~g~iRis~-~~~~t~edid~ll~aL~~~~~~~ 523 (625)
..+++|+++ ++++|++|+++++++|++++.+.
T Consensus 442 ----~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~ 474 (486)
T 1js3_A 442 ----GQFVLRFAICSRKVESGHVRLAWEHIRGLAAEL 474 (486)
T ss_dssp ----TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ----CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 137899997 67799999999999999987664
No 39
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=100.00 E-value=7.1e-30 Score=281.84 Aligned_cols=389 Identities=12% Similarity=0.065 Sum_probs=268.9
Q ss_pred CCCCC-CChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHH
Q 043646 44 HPPHS-KPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKM 122 (625)
Q Consensus 44 ~~~~~-~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~ 122 (625)
.+|.. .+.++.++.+++.+... | .+..++....++++++.+.+++.+.+...+.+++ ..+...++
T Consensus 31 ~~p~~~~~~~~~~~~~~~~i~l~--------g-np~~~l~s~~t~~~~~~v~~~l~~~~~~~~~~~~-----~~p~~~~l 96 (502)
T 3hbx_A 31 KMPENSIPKEAAYQIINDELMLD--------G-NPRLNLASFVTTWMEPECDKLIMSSINKNYVDMD-----EYPVTTEL 96 (502)
T ss_dssp SCCSSCCCHHHHHHHHHHHGGGS--------C-CGGGBTTCCSCCCCCHHHHHHHHHTTTCBTTCTT-----TCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhccC--------C-CCCceeccccCCCCCHHHHHHHHHHhccCCCChh-----cChhHHHH
Confidence 45555 77788888888776321 2 2334455545567788899999887755444432 23457888
Q ss_pred HHHHHHHHHHHhCCC--CCC--cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCC---ceEEEEcCCCCchhH
Q 043646 123 VHEASNYIKRCLGGG--QAD--AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEE---RWVVFLGPYEHHSNL 195 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~--~~~--~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd---~~~Vlv~~~~h~s~~ 195 (625)
.+++++++++++|++ +++ ..++| +|+++++..++.++.... ..+. ..+|+ +++|+++...|.++.
T Consensus 97 e~~~~~~la~l~g~~~~~~~~~~g~~t-~ggtea~~~a~~a~~~~~----~~~~---~~~G~~~~~~~vi~~~~~h~s~~ 168 (502)
T 3hbx_A 97 QNRCVNMIAHLFNAPLEEAETAVGVGT-VGSSEAIMLAGLAFKRKW----QNKR---KAEGKPVDKPNIVTGANVQVCWE 168 (502)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCEEEEE-SSHHHHHHHHHHHHHHHH----HHHH---HHTTCCCSCCEEEEETTCCHHHH
T ss_pred HHHHHHHHHHHhCCCcccccCCcceec-CcHHHHHHHHHHHHHHHH----hHHH---HhcCCCCCCcEEEEcCCchHHHH
Confidence 999999999999998 432 22457 455555555444431100 0000 01132 236999999999999
Q ss_pred HHHHHcCCeEEEEecCCC-CCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHc------CCEEEE
Q 043646 196 LSWRQSLAEVVEIGLDDN-GLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQY------GGFACF 268 (625)
Q Consensus 196 ~~~~~~G~~vv~v~~~~~-~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~------g~~viv 268 (625)
..++..|++++.|+++++ +.+|+++|+++|+ ++|++|++++++|+||.+.|+++|+++|+++ |+++|+
T Consensus 169 ~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~-----~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~V 243 (502)
T 3hbx_A 169 KFARYFEVELKEVKLSEGYYVMDPQQAVDMVD-----ENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHV 243 (502)
T ss_dssp HHHHHTTCEEEEECCBTTBCSCCHHHHHHHCC-----TTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHHcCceeEEEecCCCcCcCCHHHHHHHHh-----hCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEE
Confidence 999999999999999875 8999999999998 5799999999999999999999999999999 999999
Q ss_pred eccCcCCC-------ccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccC---CCCCcccCCceEEeecccc
Q 043646 269 DFAASGPY-------VKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLG---SSPPSTCGGGTVNYVNAFD 338 (625)
Q Consensus 269 D~A~~~g~-------~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~---~~~p~~~ggg~v~~~~~~~ 338 (625)
|+|++.+. .+.++.. .++|++++++|||+++|.|+|++++++... +. ...+.+.++....+
T Consensus 244 D~A~~~~~~p~~~~~~~~~~~~---~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~-l~~~~~~~~~yl~~~~~~~----- 314 (502)
T 3hbx_A 244 DAASGGFIAPFLYPELEWDFRL---PLVKSINVSGHKYGLVYAGIGWVIWRNKED-LPEELIFHINYLGADQPTF----- 314 (502)
T ss_dssp ECTTGGGTHHHHCTTCCCSTTS---TTEEEEEEETTTTTCCCSSCEEEEESSGGG-SCGGGCEEECSSSSCEEEC-----
T ss_pred ECCccchhhhhhCcccccccCC---CCceEEEECcccccCCCCCeEEEEEeCHHH-hhHHhccCcccccCCCCCc-----
Confidence 99998443 2333332 389999999999998999999999976431 11 11122222221110
Q ss_pred ccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEE
Q 043646 339 EKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILS 416 (625)
Q Consensus 339 ~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~ 416 (625)
...++.+...++ .+++..+ ...|++.+.++...+++++.+.|.++++++++.+ ....++++
T Consensus 315 -------------~~~~sr~~~~~~a~~~al~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~--~~~~~~v~ 377 (502)
T 3hbx_A 315 -------------TLNFSKGSSQVIAQYYQLIRL--GHEGYRNVMENCRENMIVLREGLEKTERFNIVSK--DEGVPLVA 377 (502)
T ss_dssp -------------CSCCSCBSHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSC--SSSSSEEE
T ss_pred -------------cccCCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeC--CCCceEEE
Confidence 001222222222 2333333 3456778888999999999999999988999875 13678888
Q ss_pred EEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEE
Q 043646 417 FLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWT 496 (625)
Q Consensus 417 f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~i 496 (625)
|.+.++. .++..++.+.|.+ .||.++........ . ...++
T Consensus 378 f~~~~~~-------------~~~~~~l~~~L~~-~Gi~v~~~~~p~~~--------~------------------~~~~l 417 (502)
T 3hbx_A 378 FSLKDSS-------------CHTEFEISDMLRR-YGWIVPAYTMPPNA--------Q------------------HITVL 417 (502)
T ss_dssp EEESSCS-------------SCCHHHHHHHHHT-TTCBCCEEECCTTC--------T------------------TCEEE
T ss_pred EEecCCC-------------cCCHHHHHHHHHh-CCcEEeeccCCccc--------C------------------CceEE
Confidence 8875421 2445688999965 79998643221100 0 23789
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 497 RITFPYYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 497 Ris~~~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
||+++..+|.+|++++++.|+++++...+
T Consensus 418 Risv~~~~t~edid~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 418 RVVIREDFSRTLAERLVIDIEKVMRELDE 446 (502)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999876543
No 40
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.98 E-value=4.6e-30 Score=270.42 Aligned_cols=342 Identities=10% Similarity=0.046 Sum_probs=243.1
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHH-HHHHHHHHHHHHHhCCCCC-CcEEEeCChHHHHHHHHHHHhcccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMT-KMVHEASNYIKRCLGGGQA-DAIIFCGAGTTAAIKRLQEVMGITV 164 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~-~~~~~~~~~ia~~~g~~~~-~~vift~sGttaal~~l~~~l~~~~ 164 (625)
...++.|.+++.+.+ + +. ..... ....++++++++++|.+.+ +++++| +|+++++..++.++
T Consensus 13 ~~~~~~v~~a~~~~~----~--~~-----~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~-~g~t~a~~~~~~~~---- 76 (366)
T 1m32_A 13 LTTSRTVKEAMLFDS----C--TW-----DDDYNIGVVEQIRQQLTALATASEGYTSVLLQ-GSGSYAVEAVLGSA---- 76 (366)
T ss_dssp CCCCHHHHHTTCCCC----C--TT-----SHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEE-SCHHHHHHHHHHHS----
T ss_pred cCCCHHHHHHHhhhh----c--CC-----CHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEe-cChHHHHHHHHHHh----
Confidence 446778888775532 1 11 11222 5678899999999993211 268998 67888888888876
Q ss_pred cchhhhhhhhccCCCCceEEEEcCCCCchh-HHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEeccc
Q 043646 165 PSIMRDKLITSLRDEERWVVFLGPYEHHSN-LLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACS 243 (625)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~-~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~ 243 (625)
+++||+ +|++++.+|++. ....+..|++++.++++.++.+|+++|+++++++ .++++|++++++
T Consensus 77 -----------~~~gd~-vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~---~~~~~v~~~~~~ 141 (366)
T 1m32_A 77 -----------LGPQDK-VLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNAD---PTISHIAMVHSE 141 (366)
T ss_dssp -----------CCTTCC-EEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHC---TTCCEEEEESEE
T ss_pred -----------cCCCCe-EEEEeCCCccHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcC---CCeEEEEEeccc
Confidence 467776 445556778763 3455667999999999888889999999999852 368999999999
Q ss_pred CccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCC
Q 043646 244 NVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPP 323 (625)
Q Consensus 244 n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p 323 (625)
||||.+.|+++|.++|++||+++|+|++++.+..++++..+ ++|++++|+||++++|.|+|++++++++ .+.+.+
T Consensus 142 nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~---~~di~~~s~~K~~~~~~g~G~~~~~~~~--~~~~~~ 216 (366)
T 1m32_A 142 TTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAAL---HIDYLISSANKCIQGVPGFAFVIAREQK--LAACKG 216 (366)
T ss_dssp TTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTT---TCSEEEEESSSTTCCCSSEEEEEEEHHH--HTTCTT
T ss_pred CCcceecCHHHHHHHHHHcCCEEEEECCccccCcCcccccc---CccEEEecCcccccCCCceEEEEECHHH--HHhhcC
Confidence 99999999999999999999999999999988877776654 6899999999999888889999999987 334432
Q ss_pred cccCCceEEeeccccccccccccchhh--hhcCCChhHHHHH--HHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHhhCCC
Q 043646 324 STCGGGTVNYVNAFDEKDTLYLEDIEE--RENGGTPQIVQMI--RAALAFWVKEYIG-YEVIKKQEDVYIESALGRILPN 398 (625)
Q Consensus 324 ~~~ggg~v~~~~~~~~~~~~~~~~~~~--~~~~gt~~~~~~~--~aal~~~~~~~~g-~~~i~~~~~~l~~~l~~~L~~l 398 (625)
...+. ..+....+..... ....++++..+.. .++++.+ ...| .+.+.++.+++++++.+.|.++
T Consensus 217 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~g~~~~~~~~~~~~~~~l~~~L~~~ 285 (366)
T 1m32_A 217 HSRSL---------SLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKEL--AKEGGVAARHQRYQQNQRSLVAGMRAL 285 (366)
T ss_dssp CCSCS---------TTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH--HHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCc---------cccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHH--HHccCHhHHHHHHHHHHHHHHHHHHHC
Confidence 11000 0000000000000 1112455555443 4455554 3445 7788889999999999999887
Q ss_pred CcEEEeCCCCCCCcc-eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhH
Q 043646 399 QNIQVLGNTSVKRQA-ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRS 477 (625)
Q Consensus 399 ~gv~v~~~~~~~~~~-i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~ 477 (625)
+++++.+. ..+.+ ++.+.+ +.. .+.+..++.+.|.+ +||.+++|..|.
T Consensus 286 -~~~~~~~~-~~~~~~~~~~~~-~~~------------~~~~~~~~~~~l~~-~gi~v~~~~~~~--------------- 334 (366)
T 1m32_A 286 -GFNTLLDD-ELHSPIITAFYS-PED------------PQYRFSEFYRRLKE-QGFVIYPGKVSQ--------------- 334 (366)
T ss_dssp -TCCBSSCG-GGBCSSEEEEEC-CCC------------TTCCHHHHHHHHHH-TTEECEECCCSS---------------
T ss_pred -CCeeccCc-hhcCceEEEEEc-Ccc------------CCCCHHHHHHHHHH-CCEEEECCcCCC---------------
Confidence 77766542 12345 444443 310 02346788888865 599999887663
Q ss_pred HHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 478 LEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 478 ~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
++++||+++.+++++|+++++++|++++.
T Consensus 335 ---------------~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 363 (366)
T 1m32_A 335 ---------------SDCFRIGNIGEVYAADITALLTAIRTAMY 363 (366)
T ss_dssp ---------------SCEEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred ---------------CCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999998754
No 41
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.97 E-value=2.3e-30 Score=273.49 Aligned_cols=342 Identities=12% Similarity=0.088 Sum_probs=241.9
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCC---cchhhHHHHHHHHHHHHHHHHHhCCCCCCc-EEEeCChHHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTS---DSYVGQRMTKMVHEASNYIKRCLGGGQADA-IIFCGAGTTAAI 153 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~---~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~-vift~sGttaal 153 (625)
.+|+|+++.++.|+.|++++.+.+..+. +++.. ....+....+..+++++++++++|++++.+ +++| +|+++++
T Consensus 4 ~~~l~~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t-~g~t~a~ 81 (362)
T 2c0r_A 4 RAYNFNAGPAALPLEVLERAQAEFVDYQ-HTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQ-GGASTQF 81 (362)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSST-TSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEES-SHHHHHH
T ss_pred ceeeccCCCCCCCHHHHHHHHHHHhhhh-hcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEEC-CCchHHH
Confidence 5799999999999999999999886543 32211 112345567788999999999999965324 4666 7888989
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh--HHHHHHcCCeEEEEecCC---CC-CCCHHHHHHHHHH
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN--LLSWRQSLAEVVEIGLDD---NG-LLDIEALRSQLEL 227 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~--~~~~~~~G~~vv~v~~~~---~~-~ld~~~L~~~l~~ 227 (625)
..++.++ +++||+ |++....|++. ....+..| +++.++++. .+ .+|.++++ ++
T Consensus 82 ~~~~~~l---------------~~~gd~--vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~- 140 (362)
T 2c0r_A 82 AMIPMNF---------------LKEGQT--ANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQ- 140 (362)
T ss_dssp HHHHHHH---------------CCTTCE--EEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CC-
T ss_pred HHHHHhc---------------CCCCCe--EEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cC-
Confidence 9988877 578886 66655554443 23445679 999999872 22 35666553 44
Q ss_pred hhhCCCCeEEEEecccCccccc-cCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCc
Q 043646 228 YKAAKRPMLGSFSACSNVTGIY-SDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTP 306 (625)
Q Consensus 228 ~~~~~~~~lv~~~~~~n~TG~~-~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~ 306 (625)
++|++|++++++|+||.+ .|+++| +|+++++|++|+.+..++++.+ .|++++|+||++| |.|+
T Consensus 141 ----~~t~~v~~~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~~~~~~~-----~d~~~~s~~K~~g-~~G~ 204 (362)
T 2c0r_A 141 ----DNAAYLHLTSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSRPFDLNQ-----FGLVYAGAQKNLG-PSGV 204 (362)
T ss_dssp ----TTEEEEEEESEETTTTEECSSCCCC------TTSCEEEECTTTTTSSCCCGGG-----CSEEEEETTTTTC-CSSC
T ss_pred ----CCcCEEEEeCCcCccceeccccccc------CCCEEEEEChhhccCCccchhH-----CcEEEEecccccc-CcCc
Confidence 589999999999999995 788887 8999999999999988877653 4999999999997 7789
Q ss_pred eEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhc-CHHHHHHH
Q 043646 307 GILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYI-GYEVIKKQ 383 (625)
Q Consensus 307 G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~-g~~~i~~~ 383 (625)
|++++++++ ++.+.+... .. ..+..........+|++..... .++++++ +.. +++.+.++
T Consensus 205 G~l~~~~~~--~~~l~~~~~--~~-----------~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~--~~~~~~~~~~~~ 267 (362)
T 2c0r_A 205 TVVIVREDL--VAESPKHLP--TM-----------LRYDTYVKNNSLYNTPPSFGIYMVNEVLKWI--EERGGLEGVQQA 267 (362)
T ss_dssp EEEEEEGGG--SSSCCTTSC--GG-----------GCHHHHHHTTTCSSCCCHHHHHHHHHHHHHH--HHTTHHHHHHHH
T ss_pred EEEEEcHHH--HhhccccCc--hH-----------HhHHHHhhccCcCCCchHHHHHHHHHHHHHH--HHhCCHHHHHHH
Confidence 999999988 334433110 00 0000000112335677766543 3444443 334 68889999
Q ss_pred HHHHHHHHHHhhCCCCcE-EEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC
Q 043646 384 EDVYIESALGRILPNQNI-QVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA 462 (625)
Q Consensus 384 ~~~l~~~l~~~L~~l~gv-~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~ 462 (625)
.+++++++.+.|.+++++ ++..+......++++|.+... .+..++++.|. +.||.+++|..+
T Consensus 268 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~L~-~~gi~~~~g~~~- 330 (362)
T 2c0r_A 268 NRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASE---------------ELEKEFVKASE-QEGFVGLKGHRS- 330 (362)
T ss_dssp HHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCH---------------HHHHHHHHHHH-HTTEESCBCCTT-
T ss_pred HHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCCc---------------chHHHHHHHHH-HCCCeeccCCCC-
Confidence 999999999999988646 776532112345666654211 12567888885 479988766433
Q ss_pred chhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 463 GPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.+++|||++.+++++|+++++++|++++++
T Consensus 331 ------------------------------~~~iRis~~~~~~~e~i~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 331 ------------------------------VGGLRASIYNAVPYESCEALVQFMEHFKRS 360 (362)
T ss_dssp ------------------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 256999999999999999999999988654
No 42
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.97 E-value=2e-31 Score=291.00 Aligned_cols=371 Identities=12% Similarity=0.019 Sum_probs=254.2
Q ss_pred CCCCCCCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCC---------Ccc
Q 043646 43 HHPPHSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHT---------SDS 113 (625)
Q Consensus 43 ~~~~~~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~---------~~~ 113 (625)
.++|+.-..++.+..+|++|+.. ...+|||++++++.|+.|.+++....-..+.++.. ..+
T Consensus 56 ~~lp~~g~~~~~i~~~~~~~~~~----------~~~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (456)
T 2z67_A 56 RKIPENGIDDEKIKLFLKFLSMM----------DTDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKA 125 (456)
T ss_dssp CSCCSSCCCHHHHHHHHHHHHTT----------BGGGCTTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTB
T ss_pred CCCCCCCCCHHHHHHHHHHHHhc----------cccccccccccccccccccccccCccccccCCCccHHHHHHhhCccc
Confidence 35665544456678888999765 34689999999999999999877633111112111 012
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCch
Q 043646 114 YVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHS 193 (625)
Q Consensus 114 ~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s 193 (625)
..+....++++++++++++++|++++ ++||++|+.+++...+.++. .+.+++ +|+++..+|++
T Consensus 126 ~~~~~~~~~~~~~~~~la~~~g~~~~--~~~t~g~te~a~~~al~~~~-------------~~~~~~--~vi~~~~~h~s 188 (456)
T 2z67_A 126 SGASIMYALTNKILESFFKQLGLNVH--AIATPISTGMSISLCLSAAR-------------KKYGSN--VVIYPYASHKS 188 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCE--EEEESSCHHHHHHHHHHHHH-------------HHHCCC--EEEEECCCCHH
T ss_pred ccCcHHHHHHHHHHHHHHHHcCCCCC--EEEeCcHHHHHHHHHHHHHH-------------HhcCCC--EEEEECCCcHH
Confidence 23335778889999999999999754 88985444244332222221 011344 48878889999
Q ss_pred hHHHHHHcCCeEEEEec---CCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEec
Q 043646 194 NLLSWRQSLAEVVEIGL---DDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 194 ~~~~~~~~G~~vv~v~~---~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~ 270 (625)
+...++..|++++.+++ +.++.+|+++|+++|.+....+++.+|++++++|+||.+.|+++|+++|+++|+++|+|+
T Consensus 189 ~~~~~~~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~ 268 (456)
T 2z67_A 189 PIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIING 268 (456)
T ss_dssp HHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHHHHcCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEEC
Confidence 99888889999999887 567789999999999321111478889999999999999999999999999999999998
Q ss_pred cCcCCC---ccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEe-ccccccCCCCCcccCCceEEeecccccccccccc
Q 043646 271 AASGPY---VKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLIS-KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLE 346 (625)
Q Consensus 271 A~~~g~---~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~ 346 (625)
|++... .+.+...+.. ++|++++|+|||+++|.|+|+++++ +++ +..+.|.+.|+.
T Consensus 269 A~~~~~~g~~~~~~~~~~~-~~D~~~~s~hK~~~~p~g~G~l~~~~~~~--~~~l~~~~~g~~----------------- 328 (456)
T 2z67_A 269 AYAIQNNYYLEKLKKAFKY-RVDAVVSSSDKNLLTPIGGGLVYSTDAEF--IKEISLSYPGRA----------------- 328 (456)
T ss_dssp TTTTTCHHHHHHHHHHHTS-CCSEEEEEHHHHHCCCSSCEEEEESCHHH--HHHHHTTSCSCB-----------------
T ss_pred cchHHHHHhhHHHHHhhCC-CCCEEEEcCCCCcCCCCCeEEEEEcCHHH--HhhcCcCCCCCC-----------------
Confidence 876443 3444332211 6899999999998889999999995 444 222233333221
Q ss_pred chhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC---cEEEeCCCCCCCcceEEEEeccCC
Q 043646 347 DIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ---NIQVLGNTSVKRQAILSFLVYSTT 423 (625)
Q Consensus 347 ~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~---gv~v~~~~~~~~~~i~~f~~~~~~ 423 (625)
.+++ .+. ..+++..+ ...|++.+.++...+++++.+.|.+++ ++.++.+. ++++|.+..+.
T Consensus 329 -------~~~~-~~~-~~aal~~l--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~-----~~v~~~~~~~~ 392 (456)
T 2z67_A 329 -------SATP-VVN-TLVSLLSM--GSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE-----SPIASCISVNS 392 (456)
T ss_dssp -------CSHH-HHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC-----CSSEEEEECSS
T ss_pred -------CCCH-HHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC-----CeEEEEEeccc
Confidence 1222 222 12333333 345678889999999999999998875 76666542 66667652111
Q ss_pred CCCCccccccCCCCCChHHHHHHhhhhcCe---eee------cCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCc
Q 043646 424 NSSPENMKIERNKPLHGPFVATLFNDLFGI---QAR------GGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPG 494 (625)
Q Consensus 424 ~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI---~v~------~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g 494 (625)
. ..++.+.|.+ .|| .+. .|.+|.. ...+
T Consensus 393 --------------~-~~~l~~~L~~-~gi~~~rv~~~~g~f~G~~~~~---------------------------~~~~ 429 (456)
T 2z67_A 393 --------------D-PVEIAAKLYN-LRVTGPRGIKKTDHFGNCYLGT---------------------------YTHD 429 (456)
T ss_dssp --------------C-HHHHHHHHHH-TTEESCEEECTTCHHHHTCSSC---------------------------CSCC
T ss_pred --------------H-HHHHHHHHHH-cCCCcceEEeecCccccccccc---------------------------cCcc
Confidence 1 3578888865 565 332 1333321 0247
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 495 WTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 495 ~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
++|+|++.++|++|+|+++++|+++
T Consensus 430 ~vr~s~~~~~t~eeid~~l~~L~~~ 454 (456)
T 2z67_A 430 YIVMNAAIGVRTEDIVNSVSKLEKI 454 (456)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred hhhhhhhcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999864
No 43
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.97 E-value=1e-29 Score=270.10 Aligned_cols=347 Identities=12% Similarity=0.066 Sum_probs=243.2
Q ss_pred eccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCC---CCcEEEeCChHHHHHHHH
Q 043646 80 YADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQ---ADAIIFCGAGTTAAIKRL 156 (625)
Q Consensus 80 Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~---~~~vift~sGttaal~~l 156 (625)
|+...+....++.|.+++.+.+.. + ..........+++++++++++... .++|+|| +|+++++..+
T Consensus 7 ~~~~p~p~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~-~g~t~al~~~ 75 (385)
T 2bkw_A 7 TLLIPGPIILSGAVQKALDVPSLG-----H-----TSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLA-GSGTLGWDIF 75 (385)
T ss_dssp EECSSSSCCCCHHHHHTTSCCCCC-----T-----TSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEE-SCTTHHHHHH
T ss_pred eeecCCCcCchHHHHHHHhccccc-----c-----CCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEc-CchHHHHHHH
Confidence 445555566667777776543321 1 122234456678888888887641 2379998 6777778888
Q ss_pred HHHhcccccchhhhhhhhccCCCCceEEEEc-CCC-CchhHHHHHHcCCeEEEEec-CCCCCCCHHHHHHHHHHhhhCCC
Q 043646 157 QEVMGITVPSIMRDKLITSLRDEERWVVFLG-PYE-HHSNLLSWRQSLAEVVEIGL-DDNGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~-~~~-h~s~~~~~~~~G~~vv~v~~-~~~~~ld~~~L~~~l~~~~~~~~ 233 (625)
+.++... +++||+ |++. ... |.+....++..|++++.+++ +.++.+|+++|++++++ .+
T Consensus 76 ~~~~~~~------------~~~gd~--vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~----~~ 137 (385)
T 2bkw_A 76 ASNFILS------------KAPNKN--VLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ----NS 137 (385)
T ss_dssp HHHHSCT------------TCSCCE--EEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH----SC
T ss_pred HHHHhcc------------CCCCCe--EEEEcCCcchHHHHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhc----CC
Confidence 7776200 167885 5554 333 33333556778999999999 77888999999999984 37
Q ss_pred CeEEEEecccCccccccCHHHHHHHHHHc--CCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEE
Q 043646 234 PMLGSFSACSNVTGIYSDTRSIARLLHQY--GGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLI 311 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~l~~I~~la~~~--g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v 311 (625)
+++|++++++|+||.+.|+++|+++|++| |+++|+|++++.+..++++..+ ++|++++|+||++++|.|+|++++
T Consensus 138 ~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~~~~~G~G~~~~ 214 (385)
T 2bkw_A 138 YGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEW---GVDFALTASQKAIGAPAGLSISLC 214 (385)
T ss_dssp CSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTT---TCSEEEEESSSTTCCCSCEEEEEE
T ss_pred CCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCcccccccc---CceEEEecCccccccCCcceEEEE
Confidence 89999999999999999999999999999 9999999999988877777665 789999999999988888999999
Q ss_pred eccccccC-CC------CCcccCCceEEeeccccccccccccchhhhhc------CCChhHHHHHH--HHHHHHHHhhcC
Q 043646 312 SKALYQLG-SS------PPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN------GGTPQIVQMIR--AALAFWVKEYIG 376 (625)
Q Consensus 312 ~~~~~~l~-~~------~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~------~gt~~~~~~~~--aal~~~~~~~~g 376 (625)
+++. ++ .+ ++..+++.. ..+.....+++ .++++..+.+. ++++++ +..|
T Consensus 215 ~~~~--~~~~l~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~ 278 (385)
T 2bkw_A 215 SSRF--MDYALNDSKNGHVHGYFSSL------------RRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEI--LEEG 278 (385)
T ss_dssp CHHH--HHHHTCHHHHCCCSCSTTCH------------HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH--HHHC
T ss_pred cHHH--HHHHHhhccCCCCCceeecH------------HHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHH--HHcc
Confidence 8876 22 22 121222110 00001111222 35677666543 444443 3457
Q ss_pred HHHHHHHHHHHHHHHHHhh-CCCCcEEEeCCCCC--CCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCe
Q 043646 377 YEVIKKQEDVYIESALGRI-LPNQNIQVLGNTSV--KRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGI 453 (625)
Q Consensus 377 ~~~i~~~~~~l~~~l~~~L-~~l~gv~v~~~~~~--~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI 453 (625)
.+.+.++.+++++++.+.| +++ +++++.+... ....++.+.+ ++ ..++.+.|.+ +||
T Consensus 279 ~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~l~~-~gi 338 (385)
T 2bkw_A 279 LHKRWDLHREMSDWFKDSLVNGL-QLTSVSRYPSNMSAHGLTAVYV-AD-----------------PPDVIAFLKS-HGV 338 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT-CCEESSCSSSTTBCSSCEEEEC-SC-----------------HHHHHHHHHH-TTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CceecccCcccccCCceEEEec-CC-----------------HHHHHHHHHH-CCe
Confidence 8888899999999999999 988 8888754221 2345555544 21 4578888854 799
Q ss_pred eeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEe-cC---CCCCHHHHHHHHHHHHHHHHh
Q 043646 454 QARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRIT-FP---YYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 454 ~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis-~~---~~~t~edid~ll~aL~~~~~~ 522 (625)
.+++|..+.. .++++||| ++ +.++++|+++++++|++++.+
T Consensus 339 ~v~~g~~~~~----------------------------~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 339 VIAGGIHKDI----------------------------GPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp ECBCCCCTTT----------------------------GGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred EEeCCCCccc----------------------------CCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 9998865421 14889999 66 357999999999999987643
No 44
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.97 E-value=6.1e-30 Score=269.58 Aligned_cols=344 Identities=14% Similarity=0.116 Sum_probs=246.5
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchh---hHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChH-HHHHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYV---GQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGT-TAAIK 154 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~---~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGt-taal~ 154 (625)
+|+++.+..++|+.|.+++.+.+... .|++...+.. +....+..+++++++++++|++..++|++| +|+ ++++.
T Consensus 4 ~~~~~~g~~~~p~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~-~g~gt~al~ 81 (360)
T 1w23_A 4 VFNFNAGPSALPKPALERAQKELLNF-NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFL-QGGASLQFT 81 (360)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSS-TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEE-SSHHHHHHH
T ss_pred eEeecCCCcCCCHHHHHHHHHHhhhh-ccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEE-CCcchHHHH
Confidence 67788888899999999999988654 5665433322 456677899999999999999743489998 666 88888
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCc-eEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHH-HHHHhhhC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEER-WVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRS-QLELYKAA 231 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~-~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~-~l~~~~~~ 231 (625)
.++..+. .++++ .+|+++.++|++.. .++..| +++.+++++ ++.+|+++|++ +++
T Consensus 82 ~~~~~l~---------------~~~~~g~~vi~~~~~~~~~~-~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~----- 139 (360)
T 1w23_A 82 MLPMNLL---------------TKGTIGNYVLTGSWSEKALK-EAKLLG-ETHIAASTKANSYQSIPDFSEFQLN----- 139 (360)
T ss_dssp HHHHHHC---------------CTTCEEEEEECSHHHHHHHH-HHHTTS-EEEEEEECGGGTSCSCCCGGGCCCC-----
T ss_pred HHHHHhc---------------CCCCcccEEEecchhHHHHH-HHHHhC-CeEEeecccccCcCCccchHhhccC-----
Confidence 8877762 33322 24777777777643 356679 999999986 66789999988 775
Q ss_pred CCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEE
Q 043646 232 KRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLI 311 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v 311 (625)
++|++|++++++||||.+.| +|. ++||+++|+|++|+.+..++++.. .|++++|+||++| |.|+|++++
T Consensus 140 ~~~k~v~~~~~~nptG~~~~--~i~---~~~~~~li~D~a~~~~~~~~~~~~-----~di~~~s~sK~~~-~~G~G~~~~ 208 (360)
T 1w23_A 140 ENDAYLHITSNNTIYGTQYQ--NFP---EINHAPLIADMSSDILSRPLKVNQ-----FGMIYAGAQKNLG-PSGVTVVIV 208 (360)
T ss_dssp TTEEEEEEESEETTTTEECS--SCC---CCCSSCEEEECTTTTTSSCCCGGG-----CSEEEEETTTTTS-CTTCEEEEE
T ss_pred CCCCEEEEeCCCCCcceecc--ccc---ccCCceEEEechhhcCCCCcCccc-----CCEEEEEcccccC-CCCcEEEEE
Confidence 58999999999999999977 333 389999999999999887776653 3899999999997 778999999
Q ss_pred eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhc-CHHHHHHHHHHHH
Q 043646 312 SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYI-GYEVIKKQEDVYI 388 (625)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~-g~~~i~~~~~~l~ 388 (625)
++++ ++.+.+.. + +.+.+ ... ...+...++++..++. .++++++ ... +.+.+.++.++++
T Consensus 209 ~~~~--~~~~~~~~-~-~~~~~---------~~~--~~~~~~~~~~~~~~~~~~~~al~~~--~~~~~~~~~~~~~~~~~ 271 (360)
T 1w23_A 209 KKDL--LNTKVEQV-P-TMLQY---------ATH--IKSDSLYNTPPTFSIYMLRNVLDWI--KDLGGAEAIAKQNEEKA 271 (360)
T ss_dssp EHHH--HCSCCTTC-C-GGGCH---------HHH--HHTTTCSSCCCHHHHHHHHHHHHHH--HHTTHHHHHHHHHHHHH
T ss_pred cHHH--HhhcccCC-c-chhhh---------hhh--hhccCCCCCCCHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHH
Confidence 9887 34444332 1 11000 000 0123455777776643 3445544 233 5788899999999
Q ss_pred HHHHHhhCCCCcE-EEeCCCCCCCcc-eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhh
Q 043646 389 ESALGRILPNQNI-QVLGNTSVKRQA-ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYG 466 (625)
Q Consensus 389 ~~l~~~L~~l~gv-~v~~~~~~~~~~-i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~ 466 (625)
+++.+.|.+++++ .+..+. ..+.+ ++.+.+... .+..++.+.|. ++||.+++|..+
T Consensus 272 ~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------------~~~~~~~~~l~-~~gi~~~~~~~~----- 329 (360)
T 1w23_A 272 KIIYDTIDESNGFYVGHAEK-GSRSLMNVTFNLRNE---------------ELNQQFLAKAK-EQGFVGLNGHRS----- 329 (360)
T ss_dssp HHHHHHHHTTTTSSEESSCG-GGBCSSEEEEECSSH---------------HHHHHHHHHHH-HTTEESCBCCTT-----
T ss_pred HHHHHHHHHccCcccccCCc-hhccCcEEEEEcCCC---------------ccHHHHHHHHH-HCCeeeecCCCC-----
Confidence 9999999988765 543211 12344 555544210 11346777774 479998766421
Q ss_pred HhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 467 HTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 467 ~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
++++|||++.+++++|+++++++|++++.+
T Consensus 330 --------------------------~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 330 --------------------------VGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp --------------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------CCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 378999999999999999999999988754
No 45
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.97 E-value=1.3e-29 Score=269.90 Aligned_cols=333 Identities=13% Similarity=0.121 Sum_probs=236.8
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceE
Q 043646 104 FYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWV 183 (625)
Q Consensus 104 ~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~ 183 (625)
.++|+.. ++.+..+.+.++++++.+++++|++ + .++||+ |+++++..++..+ .+||+
T Consensus 20 ~~~~~~~--~h~~~~~~~~~~~~~~~l~~~~~~~-~-~v~~~~-sgt~a~~~~~~~~----------------~~gd~-- 76 (379)
T 3ke3_A 20 VYTDRAL--NHMSKAFQEVMNDLLSNLKTVYNAE-A-AVIIPG-SGTYGMEAVARQL----------------TIDED-- 76 (379)
T ss_dssp SCCTTSC--CTTSHHHHHHHHHHHHHHHHHHTCS-E-EEEEES-CHHHHHHHHHHHH----------------CTTCE--
T ss_pred hccCCCC--CCCCHHHHHHHHHHHHHHHHHhCCC-C-EEEEcC-ChhHHHHHHHHhC----------------CCCCe--
Confidence 3466653 3356777899999999999999987 3 788984 5555577665443 57886
Q ss_pred EEEcCCCCchhHH--HHHHcC--CeEEEEecCCC---------CCCCHHHHHHHHHHhhhCCCCeEEEEecccCcccccc
Q 043646 184 VFLGPYEHHSNLL--SWRQSL--AEVVEIGLDDN---------GLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYS 250 (625)
Q Consensus 184 Vlv~~~~h~s~~~--~~~~~G--~~vv~v~~~~~---------~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~ 250 (625)
|++....|++... ..+..| ++++.++.+.. +.+|+++|++++.+ +++++|++++++|+||.+.
T Consensus 77 vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~----~~~~~v~~~~~~~~~G~~~ 152 (379)
T 3ke3_A 77 CLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKE----DKSAIVYAPHVETSSGIIL 152 (379)
T ss_dssp EEEEECSHHHHHHHHHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHH----HTCSEEEEESEETTTTEEC
T ss_pred EEEEeCCchhHHHHHHHHHhCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhh----cCCcEEEEEeecCCCceeC
Confidence 7777778877532 223345 48888886532 26899999999964 3789999999999999999
Q ss_pred C---HHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccC
Q 043646 251 D---TRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCG 327 (625)
Q Consensus 251 ~---l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~g 327 (625)
| +++|+++|++||+++|+|++++ |..++++..+ ++|++++|+||++++|.|+|++++++++.. .+.+....
T Consensus 153 ~~~~l~~i~~~~~~~~~~li~D~~~~-g~~~~~~~~~---~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~--~l~~~~~~ 226 (379)
T 3ke3_A 153 SEEYIKALSEAVHSVGGLLVIDCIAS-GCVWLDMKEL---GIDVLISAPQKGWSSTPCAGLVMLSAAAIK--KVESTESN 226 (379)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECTTC-TTCCCCHHHH---TCSEEEECTTTTTCSCCCEEEEEECHHHHH--HHHTCCCS
T ss_pred CHHHHHHHHHHHHHcCCEEEEEeccc-CCcccccccc---CCCEEEecchhhcCCCCceEEEEECHHHHH--hhhcCCCC
Confidence 9 9999999999999999999999 8888887766 889999999999999999999999988732 22221100
Q ss_pred CceEEeeccccccccccccchhhhhc------CCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC
Q 043646 328 GGTVNYVNAFDEKDTLYLEDIEEREN------GGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ 399 (625)
Q Consensus 328 gg~v~~~~~~~~~~~~~~~~~~~~~~------~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~ 399 (625)
+ +..+... +.....+++ .+|+++..+. .++++++ +..|++.+.++.+.+++++++.|.++
T Consensus 227 ~--------~~~~~~~-~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~--~~~g~~~~~~~~~~l~~~l~~~l~~~- 294 (379)
T 3ke3_A 227 C--------FSLDLKQ-WLTIMRAYENGGHAYHATMPTDSLRQFRDAILEA--KEIGFDILRDAQWELGNRVRKVLTDK- 294 (379)
T ss_dssp C--------STTCHHH-HHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred c--------eeecHHH-HHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHH--HHhcHHHHHHHHHHHHHHHHHHHHHc-
Confidence 0 0000000 001111111 2477766654 3556655 45689999999999999999999887
Q ss_pred cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHH
Q 043646 400 NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLE 479 (625)
Q Consensus 400 gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~ 479 (625)
+++++.+. ..+.+++.....++. ...+.+.| .++||.+++|..|... ..
T Consensus 295 g~~~~~~~-~~~~~~i~~~~~~~~----------------~~~~~~~L-~~~Gi~v~~g~~~~~~--~~----------- 343 (379)
T 3ke3_A 295 GIESVAAE-GFEAPGVVVSYTERD----------------DMHKGSAF-AEAGLQIAAGVPLKVG--EP----------- 343 (379)
T ss_dssp TCCBSBCT-TCBCSSEEEEECSCH----------------HHHSSHHH-HHTTCCCEECCCCSSC--CC-----------
T ss_pred CCEecCCc-cccCceEEEEccCCc----------------chHHHHHH-HHCCeEEeCCcccccc--cc-----------
Confidence 78777653 345665554443211 11124556 4479999998766421 00
Q ss_pred HHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 480 IRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 480 ~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
..++.+|||++.++|++||++++++|++++++.
T Consensus 344 -----------~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~ 376 (379)
T 3ke3_A 344 -----------DNFKTFRLGLFGLDKLTDIDGTVERFEKALDEV 376 (379)
T ss_dssp -----------TTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHH
T ss_pred -----------CcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHh
Confidence 024889999999999999999999999987653
No 46
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.97 E-value=2.3e-28 Score=265.38 Aligned_cols=313 Identities=15% Similarity=0.095 Sum_probs=223.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
.+.+..+.+.++++++++++|.+++ +++++ +|+++++..+..++. +++||+ |+++..+|+++
T Consensus 102 ~~~g~~~~~~~~~~~la~~~g~~~~-~i~~~-~g~taa~ea~~~a~~--------------~~~gd~--Viv~~~~h~s~ 163 (438)
T 1wyu_A 102 VSQGVLQATFEYQTMIAELAGLEIA-NASMY-DGATALAEGVLLALR--------------ETGRMG--VLVSQGVHPEY 163 (438)
T ss_dssp GCHHHHHHHHHHHHHHHHHHTSSEE-CSCBS-SHHHHHHHHHHHHHH--------------HHTCCE--EEEETTSCHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhCCCcc-ceEEe-CcHHHHHHHHHHHHh--------------cCCCCE--EEEcCccCHhH
Confidence 4566788999999999999999765 67787 677755444444431 356775 99999999999
Q ss_pred HHHHHH----cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEec
Q 043646 195 LLSWRQ----SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 195 ~~~~~~----~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~ 270 (625)
...|+. .|++++.++. +++.+|+++ |+ ++|++|+++++ |+||.+.|+++|+++||++|+++++|.
T Consensus 164 ~~~~~~~a~~~G~~v~~v~~-~~~~~d~~~----i~-----~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~ 232 (438)
T 1wyu_A 164 RAVLRAYLEAVGAKLLTLPL-EGGRTPLPE----VG-----EEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVA 232 (438)
T ss_dssp HHHHHHHHHHTTCEEEEECC-BTTBCCCCC----CC-----TTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEEcC-cCCccCHHH----hC-----CCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEe
Confidence 888754 6999999997 456777765 44 57999999998 999999999999999999999999875
Q ss_pred c-CcCCCccccCCCCCCCCCcEEEEcCCC-----CCCCCCCceEEEEeccccccCCCCCcccCCceEEeecccccccccc
Q 043646 271 A-ASGPYVKINLRSRNIDGYDAIFLATHK-----FLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLY 344 (625)
Q Consensus 271 A-~~~g~~~id~~~~~~~~~D~v~~S~hK-----~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~ 344 (625)
. ++.|....+ ..+ ++|++++|.|| |++|| ++|++++++++ .+.+++...| ++.... ......
T Consensus 233 d~~a~g~~~~~-~~~---g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~~--~~~l~~~~~g-~~~~~~----~~~~~~ 300 (438)
T 1wyu_A 233 DPLSLGVLKPP-GAY---GADIAVGDGQSLGLPMGFGGP-HFGFLATKKAF--VRQLPGRLVS-ETVDVE----GRRGFI 300 (438)
T ss_dssp CTTGGGTBCCH-HHH---TCSEEEEECTTTTCCCGGGCS-CCEEEEECGGG--GGGCCSCCEE-EEEBTT----SCEEEE
T ss_pred chhhccCcCCC-ccC---CCCEEEECCcccCCCccCCCC-CeeEEEEcHHH--HHhCCCceec-cccccC----CCccee
Confidence 5 555543333 233 78999999887 67888 78999999987 3445443322 221110 000000
Q ss_pred c----cchhhhhcCCChhH-----HHHHHHH--HHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcc
Q 043646 345 L----EDIEERENGGTPQI-----VQMIRAA--LAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQA 413 (625)
Q Consensus 345 ~----~~~~~~~~~gt~~~-----~~~~~aa--l~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~ 413 (625)
+ .....+++.+|+++ ...+.++ +.+. ...|.+.+.++.+.+++++.+.|++++|++++.+. ....
T Consensus 301 ~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~--~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~~~~ 376 (438)
T 1wyu_A 301 LTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAAL--GPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK--PFFN 376 (438)
T ss_dssp ECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS--SBCS
T ss_pred eeccccccccchhcccCCccchHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC--CeEE
Confidence 0 12233556677755 2222333 3322 34578889999999999999999999999998752 1222
Q ss_pred eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeee--ecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCC
Q 043646 414 ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQA--RGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGV 491 (625)
Q Consensus 414 i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v--~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~ 491 (625)
.+.+.. + .+..++++.|.+ .||.+ ++|.+|.
T Consensus 377 ~~~~~~-~----------------~~~~~~~~~L~~-~gi~v~~~~~~~~~----------------------------- 409 (438)
T 1wyu_A 377 EFALAL-P----------------KDPEAVRRALAE-RGFHGATPVPREYG----------------------------- 409 (438)
T ss_dssp EEEEEC-S----------------SCHHHHHHHHHH-TTCCCCEECCTTSC-----------------------------
T ss_pred EEEEeC-C----------------CCHHHHHHHHHH-CCceeccccccccC-----------------------------
Confidence 333322 1 236789999976 69998 6565542
Q ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 492 KPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 492 ~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
++++|||++.++|++|+++++++|++++
T Consensus 410 -~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 410 -ENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp -SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred -CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 3889999999999999999999998763
No 47
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-28 Score=270.52 Aligned_cols=376 Identities=14% Similarity=0.056 Sum_probs=258.9
Q ss_pred CCCChHHHHHHHHHhhcC-CCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCC-CCCCCCCcchhhHHHHHHHH
Q 043646 47 HSKPSEEKLAWLRSQIIG-NDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPF-YGNTHTSDSYVGQRMTKMVH 124 (625)
Q Consensus 47 ~~~~~~~~~~~lr~~~~~-~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~-~~n~~~~~~~~~~~~~~~~~ 124 (625)
...+.++.++.++..+.. .+..+.++ + |+.+ ....++.+.+++.+.+..+ ..|+. .+.......++.+
T Consensus 41 ~g~~~~~i~~~l~~~~~~~~~~~~~~~---~---~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~ 110 (497)
T 3mc6_A 41 NGIPQDDVIEELNKLNDLIPHTQWKEG---K---VSGA--VYHGGDDLIHLQTIAYEKYCVANQL--HPDVFPAVRKMES 110 (497)
T ss_dssp SCCCHHHHHHHHHHHHHSSCCCCGGGT---C---BSSS--CSCCCHHHHHHHHHHHHHTSSCBTT--CTTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCC---C---Eeee--cCCCchHHHHHHHHHHHHHhhcCCC--CcccChHHHHHHH
Confidence 347778888888887642 22222221 1 1111 1122245666665555332 12332 2334456788899
Q ss_pred HHHHHHHHHhCCC-CCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCC-CceEEEEcCCCCchhHHHHHHcC
Q 043646 125 EASNYIKRCLGGG-QADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDE-ERWVVFLGPYEHHSNLLSWRQSL 202 (625)
Q Consensus 125 ~~~~~ia~~~g~~-~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~h~s~~~~~~~~G 202 (625)
++++++++++|.+ ..+.++++ +|+++++..++.++. +... -.+| .++.|+++...|+++..+++..|
T Consensus 111 ~~~~~la~~~g~~~~~~~~~~~-~ggt~a~~~a~~a~~--------~~~~--~~~g~~~~~Vi~~~~~h~~~~~~~~~~G 179 (497)
T 3mc6_A 111 EVVSMVLRMFNAPSDTGCGTTT-SGGTESLLLACLSAK--------MYAL--HHRGITEPEIIAPVTAHAGFDKAAYYFG 179 (497)
T ss_dssp HHHHHHHHHTTCCTTTCCEEEE-SSHHHHHHHHHHHHH--------HHHH--HHSCCSSCEEEEETTSCHHHHHHHHHSC
T ss_pred HHHHHHHHHhCCCCCCCeEEEc-CcHHHHHHHHHHHHH--------HHHH--hcCCCCCceEEEeCCccHHHHHHHHHcC
Confidence 9999999999998 33378998 566666666666541 0000 0123 11259999999999999999999
Q ss_pred CeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCc----
Q 043646 203 AEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV---- 277 (625)
Q Consensus 203 ~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~---- 277 (625)
++++.|++++ ++.+|+++|+++++ +++++|++++++|+||.+.|+++|+++|++||+++|+|+|++.+..
T Consensus 180 ~~~~~v~~~~~~~~~d~~~l~~~i~-----~~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~ 254 (497)
T 3mc6_A 180 MKLRHVELDPTTYQVDLGKVKKFIN-----KNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFME 254 (497)
T ss_dssp CEEEEECBCTTTCSBCTTTTGGGCC-----SSEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGT
T ss_pred CeEEEEecCcccCcCCHHHHHHHHh-----hCCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhh
Confidence 9999999988 78999999999987 5799999999999999999999999999999999999999874322
Q ss_pred --------cccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccC--CCCCcccCCceEEeeccccccccccccc
Q 043646 278 --------KINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLG--SSPPSTCGGGTVNYVNAFDEKDTLYLED 347 (625)
Q Consensus 278 --------~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~--~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (625)
+++.... ++|++++++||++++|.++|+++++++..... ...+.+.++..
T Consensus 255 ~~~~~~~~~~~~~~~---g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 314 (497)
T 3mc6_A 255 KAGYKNLPLLDFRVP---GVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLY----------------- 314 (497)
T ss_dssp TTTCCSCCCCSTTST---TCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTSCB-----------------
T ss_pred hhcccCCccccccCC---CCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCCCc-----------------
Confidence 2333333 78999999999998898999999988763211 01111111110
Q ss_pred hhhhhcCCChhHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC-CCcEEEeCCCCCCCcceEEEEeccCCC
Q 043646 348 IEERENGGTPQIVQM--IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP-NQNIQVLGNTSVKRQAILSFLVYSTTN 424 (625)
Q Consensus 348 ~~~~~~~gt~~~~~~--~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~-l~gv~v~~~~~~~~~~i~~f~~~~~~~ 424 (625)
......|+.+...+ ..+++..+ ...|++.+.++...+++++.+.|.+ +|+++++++. +.++++|...
T Consensus 315 -~~~~~~g~~~~~~~~a~~aal~~l--~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~---~~~~v~~~~~---- 384 (497)
T 3mc6_A 315 -GSPTLAGSRPGAIVVGCWATMVNM--GENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNP---RYSVISFSSK---- 384 (497)
T ss_dssp -CCSSSCSSCBHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCC---CSSEEEEECT----
T ss_pred -CCcCcccCCcchhHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC---CeeEEEEeCC----
Confidence 00011234333333 23444443 4556778888899999999999998 7999998653 5677777542
Q ss_pred CCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCC
Q 043646 425 SSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYM 504 (625)
Q Consensus 425 ~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~ 504 (625)
+++..++.+.|.+ .||.++.+.. +..+|+++. .+
T Consensus 385 ------------~~~~~~l~~~L~~-~Gi~v~~~~~--------------------------------~~~~ri~~~-~~ 418 (497)
T 3mc6_A 385 ------------TLNIHELSDRLSK-KGWHFNALQK--------------------------------PVALHMAFT-RL 418 (497)
T ss_dssp ------------TTTHHHHHHHHHT-TTCBCEECCS--------------------------------SCCEEEECC-TT
T ss_pred ------------CCCHHHHHHHHHh-CCEEEecCCC--------------------------------CCeEEEEEe-CC
Confidence 1346789999966 6998875432 245899998 78
Q ss_pred CHHHHHHHHHHHHHHHHhhh
Q 043646 505 SNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 505 t~edid~ll~aL~~~~~~~~ 524 (625)
+++|+++++++|++++.+..
T Consensus 419 t~e~i~~~~~~L~~~l~~~~ 438 (497)
T 3mc6_A 419 SAHVVDEICDILRTTVQELK 438 (497)
T ss_dssp TTCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987643
No 48
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.96 E-value=4.2e-28 Score=268.77 Aligned_cols=373 Identities=14% Similarity=0.074 Sum_probs=253.5
Q ss_pred CCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCC--CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHH
Q 043646 48 SKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTA--SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHE 125 (625)
Q Consensus 48 ~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~--~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~ 125 (625)
..+.++.++.++..+......+.++ + |+.+.. ....++.+.+++...+. .|+.. +........+..+
T Consensus 75 g~~~~~i~~~l~~~~~~~~~~~~~~---~---~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~p~~~~le~~ 143 (514)
T 3mad_A 75 GLPRAEILAEIAAMGAAESPAWRDG---Y---ASGAVYHGDEHHIAFLNEVYALQSQ---SNPLH--PDLWPSTAKFEAE 143 (514)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTT---C---BSSSCSCCCHHHHHHHHHHHHHHTT---CCTTC--TTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccCCCCCCC---c---eEEEecCCCCCHHHHHHHHHHHHhh---cCCcc--cccChHHHHHHHH
Confidence 3666777777777642222222221 1 222211 12223344444443332 23322 2234556778889
Q ss_pred HHHHHHHHhCCCCC-CcE--EEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC
Q 043646 126 ASNYIKRCLGGGQA-DAI--IFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL 202 (625)
Q Consensus 126 ~~~~ia~~~g~~~~-~~v--ift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G 202 (625)
+++++++++|.+.+ +++ +|| +|+++++..++.++... + .+. .+ .++| .|+++...|+++...++..|
T Consensus 144 l~~~la~~~g~~~~~~~v~~~~t-~ggt~a~~~al~a~~~~--g-~~~---~g-~~~d--~Vi~~~~~~~~~~~~~~~~G 213 (514)
T 3mad_A 144 VVAMTAHMLGGDAAGGTVCGTVT-SGGTESLLLAMKTYRDW--A-RAT---KG-ITAP--EAVVPVSAHAAFDKAAQYFG 213 (514)
T ss_dssp HHHHHHHHTTGGGGTSCCEEEEE-SSHHHHHHHHHHHHHHH--H-HHH---HC-CSSC--EEEEETTSCTHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCccCCcceEEc-CcHHHHHHHHHHHHHHH--h-hhh---cC-CCCC--eEEEeCccchHHHHHHHHcC
Confidence 99999999999741 245 888 56777677776665210 0 000 00 1124 59999999999999999999
Q ss_pred CeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCc-----
Q 043646 203 AEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV----- 277 (625)
Q Consensus 203 ~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~----- 277 (625)
++++.|+++.++.+|+++|+++|+ +++++|++++++|+||.+.|+++|+++|++||+++|+|+|++.+..
T Consensus 214 ~~v~~v~~~~~~~~d~~~Le~~i~-----~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~ 288 (514)
T 3mad_A 214 IKLVRTPLDADYRADVAAMREAIT-----PNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAER 288 (514)
T ss_dssp CEEEEECBCTTSCBCHHHHHHHCC-----TTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHH
T ss_pred CeeEEeeeCCCCCCCHHHHHHHhc-----cCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHh
Confidence 999999999889999999999997 5799999999999999999999999999999999999999886543
Q ss_pred ------cccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCc----ccCCceEEeeccccccccccccc
Q 043646 278 ------KINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPS----TCGGGTVNYVNAFDEKDTLYLED 347 (625)
Q Consensus 278 ------~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~----~~ggg~v~~~~~~~~~~~~~~~~ 347 (625)
+++... .++|++++++||++++|.++|+++++++... ..... +.++..
T Consensus 289 ~g~~~~~~~~~~---~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~----------------- 346 (514)
T 3mad_A 289 LGYPVPPFDFRL---EGVTSVSADTHKYGYGAKGTSVILYRRPDLL--HYQYFIAADWPGGLY----------------- 346 (514)
T ss_dssp TTCCCCCCSTTS---TTCCEEEECTTTTTCCCSSCEEEEESSHHHH--TTTCEEESSCTTCSE-----------------
T ss_pred cCCCCCcccccC---CCCcEEEECchhccCCCCCeEEEEEeCHHHh--ccccccccccCCCcc-----------------
Confidence 233333 3789999999999888888999999987632 21111 111111
Q ss_pred hhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCC
Q 043646 348 IEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNS 425 (625)
Q Consensus 348 ~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~ 425 (625)
......|+++....+ .+++..+ ...+.+.+.++..++++++.+.|.++++++++.+. .+++.|...
T Consensus 347 -~~~~~~gs~~~~~~~a~~aal~~l--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~~~~~~~~~----- 414 (514)
T 3mad_A 347 -FSPTFAGSRPGALSATAWAAMLSL--GEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP----LWVIAVASD----- 414 (514)
T ss_dssp -EESSSCSSCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC----SSEEEEECS-----
T ss_pred -cCCccCCCCchHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC----eEEEEEeCC-----
Confidence 011123555544433 3334433 45567888899999999999999999999988763 345555431
Q ss_pred CCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecC-CCC
Q 043646 426 SPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFP-YYM 504 (625)
Q Consensus 426 ~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~-~~~ 504 (625)
.++..++.+.|.+ +||.+ .|..| ++++|+++. ..+
T Consensus 415 -----------~~~~~~l~~~L~~-~Gi~v-~g~~~-------------------------------~~~~Ri~~~~~~~ 450 (514)
T 3mad_A 415 -----------ELNIYQVMEEMAG-RGWRL-NGLHR-------------------------------PPAFHVALTLRHT 450 (514)
T ss_dssp -----------SSCHHHHHHHHHT-TTCBC-EEETT-------------------------------TTEEEEECCGGGG
T ss_pred -----------CCCHHHHHHHHHh-cCCEe-ccCCC-------------------------------CCeEEEEEecCCC
Confidence 1346788998866 59988 44322 367999997 555
Q ss_pred CHHHHHHHHHHHHHHHHhhh
Q 043646 505 SNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 505 t~edid~ll~aL~~~~~~~~ 524 (625)
+++++++++++|++++++..
T Consensus 451 ~~e~i~~~l~~L~~~l~~~~ 470 (514)
T 3mad_A 451 EPGVVDRFLADLQDAVAQVR 470 (514)
T ss_dssp STTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999987643
No 49
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.96 E-value=1.1e-27 Score=252.98 Aligned_cols=324 Identities=15% Similarity=0.085 Sum_probs=234.7
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
+.+++|+.+... ++++.|.+++.+.+.....+|. ....++++++++++|++++ +|++| +|+++++.
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~-----------~~~~~lr~~la~~~~~~~~-~v~~~-~g~t~a~~ 98 (363)
T 3ffh_A 32 TKITKLSSNENPLGTSKKVAAIQANSSVETEIYPD-----------GWASSLRKEVADFYQLEEE-ELIFT-AGVDELIE 98 (363)
T ss_dssp SCCEECSSCSCTTCCCHHHHHHHHTCBSCCCBC---------------CHHHHHHHHHHHTCCGG-GEEEE-SSHHHHHH
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHHHHhhcCCC-----------cchHHHHHHHHHHhCCChh-hEEEe-CCHHHHHH
Confidence 467888876443 4678999999876643322221 2356799999999998776 89998 78888899
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
.++.++ +++||+ |+++.+.|+++...++..|++++.++.++++.+|+++|+++++ +++
T Consensus 99 ~~~~~~---------------~~~gd~--vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-----~~~ 156 (363)
T 3ffh_A 99 LLTRVL---------------LDTTTN--TVMATPTFVQYRQNALIEGAEVREIPLLQDGEHDLEGMLNAID-----EKT 156 (363)
T ss_dssp HHHHHH---------------CSTTCE--EEEEESSCHHHHHHHHHHTCEEEEEECCTTSCCCHHHHHHHCC-----TTE
T ss_pred HHHHHH---------------ccCCCE--EEEcCCChHHHHHHHHHcCCEEEEecCCCCCCcCHHHHHHhcc-----cCC
Confidence 888876 478885 8888899999988888899999999998888999999999987 579
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHc--CCEEEEeccCcCCCc---cccCCCCCCCCCcEEEEcCCCCCCCCC-CceE
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQY--GGFACFDFAASGPYV---KINLRSRNIDGYDAIFLATHKFLGGPG-TPGI 308 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~--g~~vivD~A~~~g~~---~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~ 308 (625)
++|++++++||||.+.|+++|.++++.+ |+++|+|++++.... ...+........++++.|++|++|.|+ ++|+
T Consensus 157 ~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~ 236 (363)
T 3ffh_A 157 TIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGY 236 (363)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEE
T ss_pred CEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhhcCchhceee
Confidence 9999999999999999999999999987 999999999883221 111111111234577889999997343 3599
Q ss_pred EEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 043646 309 LLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYI 388 (625)
Q Consensus 309 l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~ 388 (625)
+++++++.. .+.+. ....+++..+...+ .+.+ .+....+.+.++.+.++
T Consensus 237 ~~~~~~~~~--~l~~~---------------------------~~~~~~~~~~~~~~-~~~l-~~~~~~~~~~~~~~~~~ 285 (363)
T 3ffh_A 237 GIADKEIIR--QLNIV---------------------------RPPFNTTSIGQKLA-IEAI-KDQAFIGECRTSNANGI 285 (363)
T ss_dssp EEECHHHHH--HHHHT---------------------------CCSCCCBHHHHHHH-HHHH-HCHHHHHHHHHHHHHHH
T ss_pred eecCHHHHH--HHHHh---------------------------CCCCCCCHHHHHHH-HHHh-cCHHHHHHHHHHHHHHH
Confidence 999887732 11110 01123333332221 1121 12234567788888899
Q ss_pred HHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHh
Q 043646 389 ESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHT 468 (625)
Q Consensus 389 ~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~ 468 (625)
+++.+.|.++++++++.+. +.++.+.+ +. +..++.+.|.+ +||.+++|..|+
T Consensus 286 ~~l~~~l~~~~g~~~~~~~----~~~~~~~~-~~----------------~~~~~~~~l~~-~gi~v~~g~~~~------ 337 (363)
T 3ffh_A 286 KQYEAFAKRFEKVKLYPAN----GNFVLIDL-GI----------------EAGTIFSYLEK-NGYITRSGAALG------ 337 (363)
T ss_dssp HHHHHHHHHCTTCEECCCC----SSEEEEEC-SS----------------CHHHHHHHHHH-TTEECEETTTTT------
T ss_pred HHHHHHHhhCCCceECCCC----CeEEEEEC-CC----------------CHHHHHHHHHH-CCeEEEeCccCC------
Confidence 9999999886788886542 34443333 21 35688888865 799999987764
Q ss_pred hhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 469 LLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 469 ~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
.++++||+++ +++|+++++++|+++
T Consensus 338 -----------------------~~~~iRis~~---~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 338 -----------------------FPTAVRITIG---KEEDNSAVIALLEKL 362 (363)
T ss_dssp -----------------------CTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred -----------------------CCCeEEEECC---CHHHHHHHHHHHHHh
Confidence 2489999997 999999999999875
No 50
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.96 E-value=8.4e-29 Score=272.02 Aligned_cols=359 Identities=13% Similarity=0.105 Sum_probs=246.1
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhCCCC--CCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCC---cEEEeCChHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVLPFY--GNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQAD---AIIFCGAGTTAA 152 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~~~~--~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~---~vift~sGttaa 152 (625)
.+.|.. +..+.++.|++++.+.+...+ ++|+...|..+....++.+.+++++++++|++.++ +|+++ +|+ ++
T Consensus 46 ~i~L~a-~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~-sGs-~a 122 (483)
T 1rv3_A 46 GLELIA-SENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPY-SGS-PA 122 (483)
T ss_dssp SEECCT-TCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCS-SHH-HH
T ss_pred CeEEEc-CCCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEEC-CcH-HH
Confidence 345533 335678899999988887655 56654333334456778889999999999998642 37776 788 55
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH--------HHcC--CeEEEEecC-CCCCCCHHHH
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW--------RQSL--AEVVEIGLD-DNGLLDIEAL 221 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~--------~~~G--~~vv~v~~~-~~~~ld~~~L 221 (625)
+..++.++ ++|||+ |++++.+|.++...+ ...| .+++.++++ .++.+|+++|
T Consensus 123 n~~~~~al---------------l~pGD~--Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~l 185 (483)
T 1rv3_A 123 NFAVYTAL---------------VEPHGR--IMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRL 185 (483)
T ss_dssp HHHHHHHH---------------TCTTCE--EEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHH
T ss_pred HHHHHHHh---------------cCCCCE--EEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHH
Confidence 55545555 579996 999998998886432 2334 455555556 4688999999
Q ss_pred HHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCC
Q 043646 222 RSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLG 301 (625)
Q Consensus 222 ~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lg 301 (625)
++++++ ++|++|++ +++|++ .+.|+++|+++|+++|+++++|+||+.|....++......++|++++|+||+|+
T Consensus 186 e~~i~~----~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~ 259 (483)
T 1rv3_A 186 EENARL----FHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLR 259 (483)
T ss_dssp HHHHHH----HCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGC
T ss_pred HHHHhh----cCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccCC
Confidence 999984 37999999 889998 889999999999999999999999987766555443222268999999999999
Q ss_pred CCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHH
Q 043646 302 GPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEV 379 (625)
Q Consensus 302 gp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~ 379 (625)
||.| |+++++++.. . +. ..+|....| ...............|+++...+.+ +++... ...+.+.
T Consensus 260 Gprg-G~i~~~~~~~--~-~~--~~~g~~~~y------~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~--~~~~~~~ 325 (483)
T 1rv3_A 260 GCRA-GMIFYRRGVR--S-VD--PKTGKEILY------NLESLINSAVFPGLQGGPHNHAIAGVAVALKQA--MTPEFKE 325 (483)
T ss_dssp CCSC-EEEEEECSBC--C----------CCBC------CHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH--TSHHHHH
T ss_pred CCCc-eEEEEcchhh--h-hc--cccCcchhh------HHHHHhhhhcCCcccCCccHHHHHHHHHHHHHH--hChhHHH
Confidence 9998 9999998862 1 22 122211100 0000000000111257777666543 333332 3345678
Q ss_pred HHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeee---
Q 043646 380 IKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQAR--- 456 (625)
Q Consensus 380 i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~--- 456 (625)
+.++...+++++.+.|.++ |++++.+.. ...+.+..... .+++..++.+.| ++.||.++
T Consensus 326 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~---~~~~~~v~~~~-------------~g~~~~~~~~~L-~~~gI~v~~~~ 387 (483)
T 1rv3_A 326 YQRQVVANCRALSAALVEL-GYKIVTGGS---DNHLILVDLRS-------------KGTDGGRAEKVL-EACSIACNKNT 387 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCEEGGGSC---SSSEEEEEGGG-------------GTCCHHHHHHHH-HHTTEECEEEC
T ss_pred HHHHHHHHHHHHHHHHHhc-CCEeccCCC---CCceEEEeccC-------------CCCCHHHHHHHH-HhCCcEEecCC
Confidence 8889999999999999887 899886521 11222222221 134567788877 55899999
Q ss_pred -cCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCC----HHHHHHHHHHHHHHHHh
Q 043646 457 -GGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMS----NEEFEFILAALEFIAAY 522 (625)
Q Consensus 457 -~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t----~edid~ll~aL~~~~~~ 522 (625)
+|..|. . .++++||+++.++| ++|+++++++|++++..
T Consensus 388 ~pg~~~~--~--------------------------~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 388 CPGDKSA--L--------------------------RPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp CSSCSCT--T--------------------------SCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcC--C--------------------------CCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 776442 1 24789999987777 99999999999998764
No 51
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.96 E-value=8.4e-28 Score=255.95 Aligned_cols=350 Identities=11% Similarity=0.002 Sum_probs=246.5
Q ss_pred ccccCCCCCCceEeccCCCC-CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEE
Q 043646 67 VEFDYSFGKRRLTYADHTAS-GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG--GGQADAII 143 (625)
Q Consensus 67 ~~~~~p~g~~~~~Yld~~~~-~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g--~~~~~~vi 143 (625)
...++..| +.++.|..+.. .+.++.|.+++.+.+.... + .| +....++.+++++++++.+| .+++ +|+
T Consensus 19 ~~~~d~~g-~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~---~--~y--~~~~~~l~~~la~~l~~~~g~~~~~~-~i~ 89 (391)
T 3dzz_A 19 SIKWGVLK-EKELPMWIAEMDFKIAPEIMASMEEKLKVAA---F--GY--ESVPAEYYKAVADWEEIEHRARPKED-WCV 89 (391)
T ss_dssp BTTTTTCC-TTCEECCSSCCSSCCCHHHHHHHHHHHTTCC---C--CC--BCCCHHHHHHHHHHHHHHHSCCCCGG-GEE
T ss_pred ccceeccC-CCceeccccCCCCCCCHHHHHHHHHHHhcCc---C--CC--CCCCHHHHHHHHHHHHHHhCCCCCHH-HEE
Confidence 34444555 35667765543 3467899999988875311 0 11 11135678889999999998 4454 899
Q ss_pred EeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-C--CCCCHHH
Q 043646 144 FCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-N--GLLDIEA 220 (625)
Q Consensus 144 ft~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~--~~ld~~~ 220 (625)
+| +|+++++..++.++ +++||+ |+++.++|+++...++..|++++.++++. + +.+|+++
T Consensus 90 ~~-~g~~~a~~~~~~~l---------------~~~gd~--vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~ 151 (391)
T 3dzz_A 90 FA-SGVVPAISAMVRQF---------------TSPGDQ--ILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWAD 151 (391)
T ss_dssp EE-SCHHHHHHHHHHHH---------------SCTTCE--EEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHH
T ss_pred EC-CCHHHHHHHHHHHh---------------CCCCCe--EEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHH
Confidence 98 78888899888877 478885 99999999999988999999999999852 2 2489999
Q ss_pred HHHHHHHhhhCCCCeEEEEecccCccccc---cCHHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCCCCCCc--E
Q 043646 221 LRSQLELYKAAKRPMLGSFSACSNVTGIY---SDTRSIARLLHQYGGFACFDFAASGPY----VKINLRSRNIDGYD--A 291 (625)
Q Consensus 221 L~~~l~~~~~~~~~~lv~~~~~~n~TG~~---~~l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~~~~~D--~ 291 (625)
|++++++ +++++|++++++||||.+ .++++|+++|++||+++|+|++++... ...++..+.....| +
T Consensus 152 l~~~l~~----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i 227 (391)
T 3dzz_A 152 LEEKLAT----PSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVV 227 (391)
T ss_dssp HHHHHTS----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEE
T ss_pred HHHHHhc----cCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEE
Confidence 9999973 479999999999999999 668999999999999999999987532 23333333111256 8
Q ss_pred EEEcCCCCCCCCC-CceEEEEe-ccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHH
Q 043646 292 IFLATHKFLGGPG-TPGILLIS-KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAAL 367 (625)
Q Consensus 292 v~~S~hK~lggp~-g~G~l~v~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal 367 (625)
++.|+||++|.|+ ++|+++++ +++.. .+... .......+++..+.. .+++
T Consensus 228 ~~~s~sK~~g~~G~r~G~~~~~~~~~~~--~~~~~------------------------~~~~~~~~~~~~~~~a~~~~l 281 (391)
T 3dzz_A 228 SLISPSKTFNLAALHAACAIIPNPDLRA--RAEES------------------------FFLAGIGEPNLLAIPAAIAAY 281 (391)
T ss_dssp EEECSHHHHTCTTTCCEEEECCSHHHHH--HHHHH------------------------HHHHTCSSCCTTHHHHHHHHH
T ss_pred EEEeChhhccccchhheEEEECCHHHHH--HHHHH------------------------HHhhccCCCCHHHHHHHHHHH
Confidence 8999999997343 48999987 55521 11000 011111223322221 2222
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHhhCC-CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHH
Q 043646 368 AFWVKEYIGYEVIKKQEDVYIESALGRILP-NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATL 446 (625)
Q Consensus 368 ~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~-l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ 446 (625)
.. .....+.+.++.+.+++++.+.|.+ +|+++++.+. .+.+.+...+.. +++..++.+.
T Consensus 282 ~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~-------------~~~~~~~~~~ 341 (391)
T 3dzz_A 282 EE---GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSN----ASYLAWVDISAL-------------GMNAEDFCKY 341 (391)
T ss_dssp HH---CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCC----BSSEEEEECGGG-------------CSCHHHHHHH
T ss_pred hc---cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccC----ceEEEEEehhhc-------------CCCHHHHHHH
Confidence 21 1223567788888889999999988 8899887653 344444443321 2356788998
Q ss_pred hhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 447 FNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 447 L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
|.+++||.+++|..|..+ .++++||+++ ++++++++++++|++++.+
T Consensus 342 l~~~~gi~v~~g~~~~~~---------------------------~~~~iRis~~--~~~~~i~~~l~~l~~~l~~ 388 (391)
T 3dzz_A 342 LREKTGLIISAGNGYRGN---------------------------GHEFVRINLA--CPKELVIDGMQRLKQGVLN 388 (391)
T ss_dssp HHHHHCEECEESGGGCTT---------------------------GGGEEEEECC--SCHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCEEEeCchhhCCC---------------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 865689999999877521 1489999998 6899999999999998865
No 52
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.96 E-value=5.4e-28 Score=259.02 Aligned_cols=345 Identities=13% Similarity=0.031 Sum_probs=242.6
Q ss_pred eEeccCCCCC--cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCC--CCcEEEeCChHHHHH
Q 043646 78 LTYADHTASG--RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQ--ADAIIFCGAGTTAAI 153 (625)
Q Consensus 78 ~~Yld~~~~~--~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~--~~~vift~sGttaal 153 (625)
.+.|..+... +.++.|.+++.+.+.... ...|.......++.+++++++++++|.+. +++|++| +|+++++
T Consensus 41 ~id~~~g~~~~~~~~~~v~~a~~~~~~~~~----~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~-~g~~~a~ 115 (407)
T 3nra_A 41 PVDFSHGDVDAHEPTPGAFDLFSAGVQSGG----VQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIIT-PGTQGAL 115 (407)
T ss_dssp CEETTSCCTTTSCCCTTHHHHHHHHHHHTH----HHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEE-SHHHHHH
T ss_pred eeeecCcCCCCCCCcHHHHHHHHHHHhcCC----CCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEe-CCcHHHH
Confidence 5666653333 567889999988774210 00111122346788889999999999852 2379998 7888889
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEec------CCCCCCCHHHHHHHHHH
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGL------DDNGLLDIEALRSQLEL 227 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~------~~~~~ld~~~L~~~l~~ 227 (625)
..++.++ +++||+ |+++.+.|+++...++..|++++.++. +.++.+|+++|+++++
T Consensus 116 ~~~~~~l---------------~~~gd~--vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~- 177 (407)
T 3nra_A 116 FLAVAAT---------------VARGDK--VAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK- 177 (407)
T ss_dssp HHHHHTT---------------CCTTCE--EEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHH-
T ss_pred HHHHHHh---------------CCCCCE--EEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHh-
Confidence 8888776 468885 999999999999889999999999998 3567899999999998
Q ss_pred hhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCC--CCCCcEEEEcCCC
Q 043646 228 YKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRN--IDGYDAIFLATHK 298 (625)
Q Consensus 228 ~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~--~~~~D~v~~S~hK 298 (625)
+++++|++++++||||.+.| +++|+++|++||+++|+|++|+.+.. ...+.... ..+.++++.|++|
T Consensus 178 ----~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK 253 (407)
T 3nra_A 178 ----AGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSK 253 (407)
T ss_dssp ----TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSS
T ss_pred ----hCCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCccc
Confidence 47899999999999999999 89999999999999999999886322 22222211 1245688899999
Q ss_pred CCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCH
Q 043646 299 FLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGY 377 (625)
Q Consensus 299 ~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~ 377 (625)
++|.|+ ++|+++.++++.. .+.. ....+..+++++.+. ++..++.......
T Consensus 254 ~~g~~G~r~G~~~~~~~~~~--~l~~------------------------~~~~~~~~~~~~~~~--a~~~~l~~~~~~~ 305 (407)
T 3nra_A 254 TESLSGYRLGVAFGSRAIIA--RMEK------------------------LQAIVSLRAAGYSQA--VLRGWFDEAPGWM 305 (407)
T ss_dssp TTCCGGGCCEEEEECHHHHH--HHHH------------------------HHHHHTSSSCHHHHG--GGGGTTCCCTTHH
T ss_pred ccCCCeeeEEEEEcCHHHHH--HHHH------------------------HHhhhccCCChHHHH--HHHHHHhccchHH
Confidence 998443 4799998877621 1100 011122222222221 1112210011225
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeec
Q 043646 378 EVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARG 457 (625)
Q Consensus 378 ~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~ 457 (625)
+...++.+.+++++.+.|.++++++++.+. .+.+.+...+. .+.+..++.+.|.+++||.+++
T Consensus 306 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~gi~v~~ 368 (407)
T 3nra_A 306 EDRIARHQAIRDELLHVLRGCEGVFARTPQ----AGSYLFPRLPK-------------LAVAPAEFVKILRLQAGVVVTP 368 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTCBCCCCS----BSSEECCBCCC-------------BSSCHHHHHHHHHHHHCEECEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceeccCC----eeEEEEEeCCC-------------CCCCHHHHHHHHHHhCCEEEeC
Confidence 667778888899999999988888876553 23444433332 1245678888887768999999
Q ss_pred CCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 458 GCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 458 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
|..|+.. .++++||+++. +++++++++++|++++++.
T Consensus 369 g~~~~~~---------------------------~~~~iRis~~~--~~~~i~~~~~~l~~~~~~~ 405 (407)
T 3nra_A 369 GTEFSPH---------------------------TADSVRLNFSQ--DHEAAVAAARRIVTLVERY 405 (407)
T ss_dssp GGGTCTT---------------------------CTTBEEEECCS--CHHHHHHHHHHHHHHHHHH
T ss_pred chhhCCC---------------------------CCCEEEEEeCC--CHHHHHHHHHHHHHHHHHh
Confidence 8877621 25899999984 8999999999999988653
No 53
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.96 E-value=2e-28 Score=257.31 Aligned_cols=334 Identities=15% Similarity=0.071 Sum_probs=234.8
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
+..+|||++..++.++.+.+++.+.+..+ . .+....++.+++++++++++|.+++ +|+|| +|+++++..
T Consensus 13 p~~i~l~~~~~~~~~~~v~~a~~~~~~~~-~--------~~~g~~~~~~~~~~~l~~~~g~~~~-~v~~~-~g~t~a~~~ 81 (359)
T 1svv_A 13 PKPYSFVNDYSVGMHPKILDLMARDNMTQ-H--------AGYGQDSHCAKAARLIGELLERPDA-DVHFI-SGGTQTNLI 81 (359)
T ss_dssp --CEECSCSCSSCCCHHHHHHHHHHTTCC-C--------CSTTCSHHHHHHHHHHHHHHTCTTS-EEEEE-SCHHHHHHH
T ss_pred CeeEEecCCCcCCCCHHHHHHHHHHHhhc-c--------ccccccHHHHHHHHHHHHHhCCCCc-cEEEe-CCchHHHHH
Confidence 45799999999999999999999887532 1 1112346788899999999998765 79998 677777888
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH--HHHHcCCeEEEEecCCCCCCCHHHHHHHHHHh--hhC
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL--SWRQSLAEVVEIGLDDNGLLDIEALRSQLELY--KAA 231 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~--~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~--~~~ 231 (625)
++.++ +++||+ |+++.++|+++.. .++..|++++.++.+ ++.+|+++|++++++. ...
T Consensus 82 ~~~~~---------------~~~gd~--vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~ 143 (359)
T 1svv_A 82 ACSLA---------------LRPWEA--VIATQLGHISTHETGAIEATGHKVVTAPCP-DGKLRVADIESALHENRSEHM 143 (359)
T ss_dssp HHHHH---------------CCTTEE--EEEETTSHHHHSSTTHHHHTTCCEEEECCT-TSCCCHHHHHHHHHHSCSTTS
T ss_pred HHHHH---------------hCCCCE--EEEcccchHHHHHHHHHhcCCCeeEEEeCC-CCeecHHHHHHHHHHHHhccC
Confidence 87776 467774 9999999999876 377789999999986 6789999999999841 011
Q ss_pred CCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccC---cCCCccccCCCCCC-CCCcEEEEcCCCCCCCCC
Q 043646 232 KRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAA---SGPYVKINLRSRNI-DGYDAIFLATHKFLGGPG 304 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~---~~g~~~id~~~~~~-~~~D~v~~S~hK~lggp~ 304 (625)
.++++|+++++ |+||.+.| +++|.++|++||+++|+|+++ +.+..+.+...... ...|++++++||+ |+|.
T Consensus 144 ~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~-g~~~ 221 (359)
T 1svv_A 144 VIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA-GGMF 221 (359)
T ss_dssp CEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT-TCSS
T ss_pred CCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC-CCCC
Confidence 14899999998 79999998 889999999999999999998 54554444332100 1579999999998 5688
Q ss_pred CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHH
Q 043646 305 TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQE 384 (625)
Q Consensus 305 g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~ 384 (625)
|+|++++++++ .+.+.+....++. .+..+.+...+ . .+++ +..+.+.+.++.
T Consensus 222 ~~g~l~~~~~~--~~~~~~~~~~~~~--------------------~~~~~~~~~~~---~-~~~l--~~~~~~~~~~~~ 273 (359)
T 1svv_A 222 GEALIILNDAL--KPNARHLIKQRGA--------------------LMAKGWLLGIQ---F-EVLM--KDNLFFELGAHS 273 (359)
T ss_dssp CEEEEECSGGG--CTTHHHHHHHTTC--------------------CCTTTHHHHHH---H-HHHT--STTHHHHHHHHH
T ss_pred ceEEEEEcccH--HHHHHHHHhcCCc--------------------ccccchhhHHH---H-HHHH--hhhhHHHHHHHH
Confidence 88999998877 3332211100000 00011111111 1 1222 334567788888
Q ss_pred HHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCch
Q 043646 385 DVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464 (625)
Q Consensus 385 ~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~ 464 (625)
+++++++.+.| +.++++++.+. ...+.+... ..++.+.|.+++||.+.+. . +
T Consensus 274 ~~~~~~l~~~L-~~~~~~~~~~~----~~~~~~~~~-------------------~~~~~~~l~~~~gi~v~~~-~---~ 325 (359)
T 1svv_A 274 NKMAAILKAGL-EACGIRLAWPS----ASNQLFPIL-------------------ENTMIAELNNDFDMYTVEP-L---K 325 (359)
T ss_dssp HHHHHHHHHHH-HHTTCCBSSCC----SSSEECBEE-------------------EHHHHHHHTTTEECEEEEE-E---T
T ss_pred HHHHHHHHHHh-ccCCeEEccCC----ccceEEEEc-------------------CHHHHHHHHHhcCEEEEec-c---c
Confidence 99999999999 56788877553 222322221 1368888877669998311 0 0
Q ss_pred hhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 465 YGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
. .++++||++++.++++|+++++++|++++.+
T Consensus 326 --~------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 326 --D------------------------GTCIMRLCTSWATEEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp --T------------------------TEEEEEEECCTTCCHHHHHHHHHHHHHC---
T ss_pred --C------------------------CCceEEEEccCcCCHHHHHHHHHHHHHHHhc
Confidence 0 1478999999999999999999999987643
No 54
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.96 E-value=5e-28 Score=259.13 Aligned_cols=343 Identities=10% Similarity=0.062 Sum_probs=235.7
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEE-eCChHHHHHH
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIF-CGAGTTAAIK 154 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vif-t~sGttaal~ 154 (625)
++.+|+.+.+.++.|+.|.+++.+.. +.....+..+....+..+++++++++++|++++++|+| | +|+++++.
T Consensus 38 ~~~~~~~~~~~~~~~~~v~~a~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t-~g~t~al~ 111 (398)
T 2fyf_A 38 KPRDGRFGSGPSKVRLEQLQTLTTTA-----AALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGN-GGATAFWD 111 (398)
T ss_dssp SCSSCBCCSSSCCCCHHHHHGGGTTT-----TTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEE-TCHHHHHH
T ss_pred ccCCccccCCCCCCCHHHHHHHhhcC-----CCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeC-CchhHHHH
Confidence 34567888888888999999886521 11110112234456788999999999999974347888 8 78888899
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH-HHHHc--CCeEEEEecCCCCCCCHHHHHHHHHHhhhC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL-SWRQS--LAEVVEIGLDDNGLLDIEALRSQLELYKAA 231 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~-~~~~~--G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~ 231 (625)
.++.++ +++| +++++..+|..... ..... |++++.++++.+...+. .++
T Consensus 112 ~~~~~l---------------~~~g---v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~g~~~~~-----~i~----- 163 (398)
T 2fyf_A 112 AAAFGL---------------IDKR---SLHLTYGEFSAKFASAVSKNPFVGEPIIITSDPGSAPEP-----QTD----- 163 (398)
T ss_dssp HHHHHT---------------CSSC---EEEEECSHHHHHHHHHHHHCTTSCCCEEEECCTTCCCCC-----CCC-----
T ss_pred HHHHHh---------------cCCC---eEEEeCCHHHHHHHHHHHHhCCCCceEEEecCCCCCCCc-----ccc-----
Confidence 988876 4554 23335555533221 23444 88999999873323332 133
Q ss_pred CCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEE
Q 043646 232 KRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLI 311 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v 311 (625)
+++++|++++++|+||.+.|+++|.++ +|+++|+|++++.+..++++. ++|++++|+||++|+|+|+|++++
T Consensus 164 ~~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~~~~~-----~~di~~~s~sK~~~~~gg~g~l~~ 235 (398)
T 2fyf_A 164 PSVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPVDIA-----ETDAYYFAPQKNFASDGGLWLAIM 235 (398)
T ss_dssp TTCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSCCCGG-----GCSEEEECTTSTTCSCSSEEEEEE
T ss_pred CCCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcccCcc-----cCcEEEEecCcccCCCCceEEEEE
Confidence 579999999999999999999999887 899999999999988777653 479999999999998877999999
Q ss_pred eccccccCCCC---------CcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcC-HHH
Q 043646 312 SKALYQLGSSP---------PSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIG-YEV 379 (625)
Q Consensus 312 ~~~~~~l~~~~---------p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g-~~~ 379 (625)
++++.. .+. +.+..++. ...........+++++.++. .++++.+ ...| .+.
T Consensus 236 ~~~~~~--~l~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~t~~~~~~~a~~~al~~~--~~~g~~~~ 298 (398)
T 2fyf_A 236 SPAALS--RIEAIAATGRWVPDFLSLPI-------------AVENSLKNQTYNTPAIATLALLAEQIDWL--VGNGGLDW 298 (398)
T ss_dssp CHHHHH--HHHHHHHTTCCCCGGGCHHH-------------HHHHHTTTCCSSCCCHHHHHHHHHHHHHH--HHHTSHHH
T ss_pred CHHHHH--HhhcccccCCCCCcEEehHH-------------HhhhcccCCCCCCCCHHHHHHHHHHHHHH--HHccCHHH
Confidence 988732 221 11111110 00000012344677766543 3445443 3345 888
Q ss_pred HHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcc-eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecC
Q 043646 380 IKKQEDVYIESALGRILPNQNIQVLGNTSVKRQA-ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGG 458 (625)
Q Consensus 380 i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~-i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G 458 (625)
+.++.+++++++.+.|+++++++++.+.+..+.+ ++.|.+.. +++..++.+.|.+ .||.+++|
T Consensus 299 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~L~~-~gI~v~~g 362 (398)
T 2fyf_A 299 AVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVD---------------DVDAGTVAKILRA-NGIVDTEP 362 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECT---------------TSCHHHHHHHHHH-TTCBCCSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCC---------------CCCHHHHHHHHHH-CCcEEecC
Confidence 9999999999999999988899987521112455 56665522 2346789998866 59999875
Q ss_pred CCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 459 CACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 459 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
... + .++++|||++.+++++|+++++++|++++.+
T Consensus 363 ~~~----------~-------------------~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 363 YRK----------L-------------------GRNQLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp CTT----------T-------------------CSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred ccc----------C-------------------CCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 210 0 1478999999999999999999999988654
No 55
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.96 E-value=2.1e-27 Score=249.71 Aligned_cols=334 Identities=13% Similarity=0.069 Sum_probs=238.3
Q ss_pred ccCCCCCCceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCC
Q 043646 69 FDYSFGKRRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGA 147 (625)
Q Consensus 69 ~~~p~g~~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~s 147 (625)
+..+.| +..++|+.+... ++++.+.+++.+.+.....+| .....++++++++++|++++ +|++| +
T Consensus 10 ~~~~~~-~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~-----------~~~~~~l~~~la~~~~~~~~-~i~~~-~ 75 (354)
T 3ly1_A 10 FTAPST-DNPIRINFNENPLGMSPKAQAAARDAVVKANRYA-----------KNEILMLGNKLAAHHQVEAP-SILLT-A 75 (354)
T ss_dssp CCCCCS-SSCEECSSCCCSSCCCHHHHHHHHHTGGGTTSCC-----------HHHHHHHHHHHHHHTTSCGG-GEEEE-S
T ss_pred ccCCCC-CceEEccCCCCCCCCCHHHHHHHHHHHhhCcCCC-----------CCchHHHHHHHHHHhCCChH-HEEEe-C
Confidence 444545 467888876544 467899999988775322211 12457899999999998766 89998 7
Q ss_pred hHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHH
Q 043646 148 GTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLEL 227 (625)
Q Consensus 148 Gttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~ 227 (625)
|+++++..++.++ +++||+ |+++.+.|+++...++..|++++.++.++++.+|+++|++++++
T Consensus 76 g~~~a~~~~~~~l---------------~~~gd~--vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~ 138 (354)
T 3ly1_A 76 GSSEGIRAAIEAY---------------ASLEAQ--LVIPELTYGDGEHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAA 138 (354)
T ss_dssp HHHHHHHHHHHHH---------------CCTTCE--EEEESSSCTHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHHHT
T ss_pred ChHHHHHHHHHHH---------------hCCCCe--EEECCCCchHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhcc
Confidence 8999999998877 478885 89999999999888999999999999988889999999999983
Q ss_pred hhhCCCCeEEEEecccCccccccCHHHHHHHHHH--cCCEEEEeccCcCCCccc---cCCC-CCCC-CCcEEEEcCCCCC
Q 043646 228 YKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYVKI---NLRS-RNID-GYDAIFLATHKFL 300 (625)
Q Consensus 228 ~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~--~g~~vivD~A~~~g~~~i---d~~~-~~~~-~~D~v~~S~hK~l 300 (625)
. +++++|++++++||||.+.|.++|.++++. +|+++|+|++++.....- .... .... +.++++.|+||++
T Consensus 139 ~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 215 (354)
T 3ly1_A 139 Y---SGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIH 215 (354)
T ss_dssp C---SSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTT
T ss_pred C---CCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhc
Confidence 1 379999999999999999999988888887 999999999987432211 1000 0111 4468889999999
Q ss_pred CCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHH
Q 043646 301 GGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEV 379 (625)
Q Consensus 301 ggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~ 379 (625)
|.| .++|++++++++.. .+... ...++++......+ .+.+ ......+.
T Consensus 216 g~~G~r~G~~~~~~~~~~--~~~~~---------------------------~~~~~~~~~~~~a~-~~~l-~~~~~~~~ 264 (354)
T 3ly1_A 216 AMAGMRVGYAVAHPTVIA--LMGRY---------------------------VAGEKINFSGVDAA-LASM-NDSAFITY 264 (354)
T ss_dssp CCGGGCCEEEECCHHHHH--HHGGG---------------------------TTCSCCCHHHHHHH-HHHT-TCHHHHHH
T ss_pred cChhhhheeeecCHHHHH--HHHHh---------------------------cCCCCCCHHHHHHH-HHHh-cCHHHHHH
Confidence 734 35799998877622 11110 01123333332211 1111 12233567
Q ss_pred HHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCC
Q 043646 380 IKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGC 459 (625)
Q Consensus 380 i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~ 459 (625)
+.++.+.+++++.+.|.++ +++++.+ .+.++ +...+. +..++.+.|.+ +||.++ |.
T Consensus 265 ~~~~~~~~~~~l~~~l~~~-~~~~~~~----~~~~~-~~~~~~----------------~~~~~~~~l~~-~gi~v~-g~ 320 (354)
T 3ly1_A 265 SKKSNDVSRQILLKALEDL-KLPYLPS----EGNFV-FHQLVV----------------PLKDYQTHMAD-AGVLIG-RA 320 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TCCBCCC----CSSEE-EEECSS----------------CHHHHHHHHHH-TTEECC-CC
T ss_pred HHHHHHHHHHHHHHHHHHC-CCeECCC----CceEE-EEECCC----------------CHHHHHHHHHH-CCEEEe-ec
Confidence 7788888889999988776 6665533 23343 333321 25688888865 799998 76
Q ss_pred CCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 460 ACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 460 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
+|. .++++||+++ +++|+++++++|++++++.
T Consensus 321 ~~~-----------------------------~~~~iRis~~---~~~~i~~~~~~l~~~l~~~ 352 (354)
T 3ly1_A 321 FPP-----------------------------ADNWCRISLG---TPQEMQWVADTMREFRKKS 352 (354)
T ss_dssp CTT-----------------------------CTTEEEEECC---CHHHHHHHHHHHHHHHHTT
T ss_pred CCC-----------------------------CCCEEEEEcC---CHHHHHHHHHHHHHHHHhh
Confidence 653 2489999987 8999999999999988753
No 56
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.96 E-value=2e-27 Score=253.05 Aligned_cols=340 Identities=13% Similarity=0.082 Sum_probs=240.3
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG--GGQADAIIFCGAGTTAA 152 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g--~~~~~~vift~sGttaa 152 (625)
+..+.|..+... +.|+.|.+++.+.+.... + .+ +....++.+++++++++++| ++++ +|++| +|++++
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~---~--~y--~~~~~~~~~~l~~~l~~~~g~~~~~~-~v~~~-~g~~~a 102 (391)
T 4dq6_A 32 NDLLPMWVADMDFKAAPCIIDSLKNRLEQEI---Y--GY--TTRPDSYNESIVNWLYRRHNWKIKSE-WLIYS-PGVIPA 102 (391)
T ss_dssp SCSEECCSSSCSSCCCHHHHHHHHHHHTTCC---C--CC--BCCCHHHHHHHHHHHHHHHCCCCCGG-GEEEE-SCHHHH
T ss_pred CCceeccccCCCCCCCHHHHHHHHHHHhCCC---C--CC--CCCCHHHHHHHHHHHHHHhCCCCcHH-HeEEc-CChHHH
Confidence 456677665544 567899999988875311 1 11 11236788899999999999 5555 89998 788888
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecC--CC--CCCCHHHHHHHHHHh
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLD--DN--GLLDIEALRSQLELY 228 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~--~~--~~ld~~~L~~~l~~~ 228 (625)
+..++.++ +++||+ |+++.+.|+++...++..|++++.++++ .+ +.+|+++|+++++
T Consensus 103 ~~~~~~~~---------------~~~gd~--vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~-- 163 (391)
T 4dq6_A 103 ISLLINEL---------------TKANDK--IMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIK-- 163 (391)
T ss_dssp HHHHHHHH---------------SCTTCE--EEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCT--
T ss_pred HHHHHHHh---------------CCCCCE--EEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhh--
Confidence 98888877 468885 9999999999998899999999999987 33 3589999999987
Q ss_pred hhCCCCeEEEEecccCccccc---cCHHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCCC--CCCcEEEEcCCCC
Q 043646 229 KAAKRPMLGSFSACSNVTGIY---SDTRSIARLLHQYGGFACFDFAASGPY----VKINLRSRNI--DGYDAIFLATHKF 299 (625)
Q Consensus 229 ~~~~~~~lv~~~~~~n~TG~~---~~l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~~--~~~D~v~~S~hK~ 299 (625)
+ +++|++++++||||.+ .++++|+++|++||+++|+|++++... ....+..+.. .+..+++.|+||+
T Consensus 164 ---~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~ 239 (391)
T 4dq6_A 164 ---D-VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKT 239 (391)
T ss_dssp ---T-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHH
T ss_pred ---c-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhh
Confidence 4 8999999999999999 558889999999999999999987632 2223332210 0223788899999
Q ss_pred CCCCC-CceEEEEec-cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCH
Q 043646 300 LGGPG-TPGILLISK-ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGY 377 (625)
Q Consensus 300 lggp~-g~G~l~v~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~ 377 (625)
+|.|+ ++|++++++ ++.. .+.+ .......++++..+...+...+. ......
T Consensus 240 ~g~~G~r~G~~~~~~~~~~~--~~~~------------------------~~~~~~~~~~~~~~~~a~~~~l~-~~~~~~ 292 (391)
T 4dq6_A 240 FNIAGLQSSYVVLPDEKDYK--LLDD------------------------AFTRIDIKRNNCFSLVATEASYN-NGESWL 292 (391)
T ss_dssp HTCGGGCCEEEECCSHHHHH--HHHH------------------------HHHHTTCCCCCHHHHHHHHHHHH-HCHHHH
T ss_pred ccCcccceEEEEeCCHHHHH--HHHH------------------------HHHhhcCCCCCHHHHHHHHHHHh-chHHHH
Confidence 97443 479998876 5421 1100 01111233445444322221121 111225
Q ss_pred HHHHHHHHHHHHHHHHhhCC-CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeee
Q 043646 378 EVIKKQEDVYIESALGRILP-NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQAR 456 (625)
Q Consensus 378 ~~i~~~~~~l~~~l~~~L~~-l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~ 456 (625)
+.+.++.+.+++++.+.|.+ +|+++++.+. .+.+.+...+.. +.+..++.+.|.+++||.++
T Consensus 293 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~gi~v~ 355 (391)
T 4dq6_A 293 ESFLEYLESNIDFAIKYINENMPKLKVRKPE----GTYLLWVDFSAL-------------GLSDEELESILVQKGKVALN 355 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSEECCCS----BSSEEEEECGGG-------------CCCHHHHHHHHHHTTCEECE
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCEecCCC----ccEEEEEEhhhc-------------CCCHHHHHHHHHHhCCEEee
Confidence 67778888889999999987 7899887653 345544433321 23467899988776699999
Q ss_pred cCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 457 GGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 457 ~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
+|..|+.+ .++++||+++ ++++++++++++|++++
T Consensus 356 ~g~~~~~~---------------------------~~~~iRis~~--~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 356 QGNSFGIG---------------------------GSGYQRINLA--CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp EGGGGCTT---------------------------CTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred CchhhCCC---------------------------CCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 98877521 2489999998 68999999999999875
No 57
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.96 E-value=3e-27 Score=250.96 Aligned_cols=349 Identities=15% Similarity=0.075 Sum_probs=241.8
Q ss_pred ccccCCCCCCceEeccCCCCC-cchHHHHHHHHHhhCC-CCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC--CCCCCcE
Q 043646 67 VEFDYSFGKRRLTYADHTASG-RSLRYIEDYIINNVLP-FYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG--GGQADAI 142 (625)
Q Consensus 67 ~~~~~p~g~~~~~Yld~~~~~-~~p~~v~ea~~~~l~~-~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g--~~~~~~v 142 (625)
...+..+|.+.++.|..+... ++++.|.+++.+.+.. .+..+. ...++.+++++++++.+| ++++ +|
T Consensus 15 ~~~~d~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~--------~~~~~~~~l~~~l~~~~g~~~~~~-~v 85 (383)
T 3kax_A 15 SIKWDTYKNEELIHAWIADMDFEVPQPIQTALKKRIEHPIFGYTL--------PPENIGDIICNWTKKQYNWDIQKE-WI 85 (383)
T ss_dssp ----CCCSSSCCEECCCSSCSSCCCHHHHHHHHHHHHSCCCCCCC--------CCTTHHHHHHHHHHHHHCCCCCGG-GE
T ss_pred ceeeeccCCCCeeecccccCCCCCCHHHHHHHHHHHhcCCCCCCC--------CCHHHHHHHHHHHHHHhCCCCChh-hE
Confidence 334445565677788766543 4578999999888743 111111 134677889999999999 4455 89
Q ss_pred EEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCC---CCCHH
Q 043646 143 IFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNG---LLDIE 219 (625)
Q Consensus 143 ift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~---~ld~~ 219 (625)
++| +|+++++..++.++ +++||+ |+++.+.|+++...++..|++++.++++.++ .+|++
T Consensus 86 ~~~-~g~~~a~~~~~~~l---------------~~~gd~--vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~ 147 (383)
T 3kax_A 86 VFS-AGIVPALSTSIQAF---------------TKENES--VLVQPPIYPPFFEMVTTNNRQLCVSPLQKQNDTYAIDFE 147 (383)
T ss_dssp EEE-SCHHHHHHHHHHHH---------------CCTTCE--EEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHH
T ss_pred EEc-CCHHHHHHHHHHHh---------------CCCCCE--EEEcCCCcHHHHHHHHHcCCEEEeccceecCCcEEEcHH
Confidence 998 78888898888877 578885 9999999999998899999999999987533 48999
Q ss_pred HHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCCC--CCCc
Q 043646 220 ALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRNI--DGYD 290 (625)
Q Consensus 220 ~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~~--~~~D 290 (625)
+|+++++ +++++|++++++||||.+.| +++|+++|++||+++|+|++++.... ..++..+.. .+.+
T Consensus 148 ~l~~~l~-----~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~ 222 (383)
T 3kax_A 148 HLEKQFQ-----QGVKLMLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAART 222 (383)
T ss_dssp HHHHHHT-----TTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTE
T ss_pred HHHHHhC-----cCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeHhhcCccccCcE
Confidence 9999995 68999999999999999987 45566679999999999999875332 223322211 1345
Q ss_pred EEEEcCCCCCCCCC-CceEEEEe-ccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHH
Q 043646 291 AIFLATHKFLGGPG-TPGILLIS-KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALA 368 (625)
Q Consensus 291 ~v~~S~hK~lggp~-g~G~l~v~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~ 368 (625)
+++.|+||+++.|+ ++|+++++ +++.. .+... ......++++..+...+ ..
T Consensus 223 i~~~s~sK~~~~~G~r~G~~~~~~~~~~~--~~~~~------------------------~~~~~~~~~~~~~~~a~-~~ 275 (383)
T 3kax_A 223 ITCMAPSKTFNIAGLQASIIIIPNEKLRQ--AFTSI------------------------QYRQGFHGLNIFAYTAM-QS 275 (383)
T ss_dssp EEEECSHHHHTCGGGCCEEEECCCHHHHH--HHHHH------------------------HHHTTCCCCCHHHHHHH-HH
T ss_pred EEEEEChhhccCcchhheEEEeCCHHHHH--HHHHH------------------------HhhcccCCCCHHHHHHH-HH
Confidence 88899999997443 47998884 45421 11000 11111234444443222 12
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHhhCC-CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHh
Q 043646 369 FWVKEYIGYEVIKKQEDVYIESALGRILP-NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLF 447 (625)
Q Consensus 369 ~~~~~~~g~~~i~~~~~~l~~~l~~~L~~-l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L 447 (625)
.+.......+.+.++.+.+++++.+.|.+ +|+++++.+. .+.+.+...+.. +++..++.+.|
T Consensus 276 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~-------------~~~~~~~~~~l 338 (383)
T 3kax_A 276 AYTECNDWLNEIRFYIEDNAKFACEYIKDHIPTLSVMKPE----GSFLLWIDCSAL-------------NLSQDERTKLL 338 (383)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCS----BSSEEEEECGGG-------------CCCHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCC----ceEEEEEEcccc-------------CCCHHHHHHHH
Confidence 21101122567778888889999999987 7899887653 345554433321 23577899989
Q ss_pred hhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 448 NDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 448 ~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.+++||.+++|..|+.+ .++++||+++ ++++++++++++|++++
T Consensus 339 ~~~~gi~v~~g~~~~~~---------------------------~~~~iRi~~~--~~~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 339 EEKGKIIVEPGEKYGLG---------------------------GEEHIGINIG--CPRSVLEEILNRLRHTF 382 (383)
T ss_dssp HHTSCEECEESGGGCTT---------------------------CTTEEEEECS--SCHHHHHHHHHHHHHHH
T ss_pred HhhCCEEeECchhhcCC---------------------------CCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 76689999998877521 2489999998 58999999999998865
No 58
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.96 E-value=5.9e-27 Score=247.63 Aligned_cols=328 Identities=13% Similarity=0.023 Sum_probs=233.0
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCC--CCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLP--FYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~--~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
+..++|+.+... +.|+.|.+++.+.+.. ....+.. ...++++++++++|++..++|++| +|++++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~-----------~~~~l~~~la~~~g~~~~~~i~~~-~g~t~a 97 (367)
T 3euc_A 30 HGLVKLDAMENPYRLPPALRSELAARLGEVALNRYPVP-----------SSEALRAKLKEVMQVPAGMEVLLG-NGSDEI 97 (367)
T ss_dssp TTCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCCC-----------CHHHHHHHHHHHHTCCTTCEEEEE-EHHHHH
T ss_pred CCeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCC-----------cHHHHHHHHHHHhCCCCcceEEEc-CCHHHH
Confidence 567888876654 4678999999887742 1111111 246789999999998333389998 789999
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~ 232 (625)
+..++.++ +++||+ |++..+.|+++...++..|++++.+++++++.+|+++|++++++ .
T Consensus 98 ~~~~~~~~---------------~~~gd~--Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~----~ 156 (367)
T 3euc_A 98 ISMLALAA---------------ARPGAK--VMAPVPGFVMYAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMAE----H 156 (367)
T ss_dssp HHHHHHHT---------------CCTTCE--EEEEESCSCCSCHHHHTTTCEEEEEECCTTSCCCHHHHHHHHHH----H
T ss_pred HHHHHHHH---------------cCCCCE--EEEcCCCHHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHHHhhc----c
Confidence 99988876 578885 88889999998888888999999999998889999999999984 2
Q ss_pred CCeEEEEecccCccccccC---HHHHHHHHHHc--CCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCC-Cc
Q 043646 233 RPMLGSFSACSNVTGIYSD---TRSIARLLHQY--GGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPG-TP 306 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~--g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~-g~ 306 (625)
++++|++++++||||.+.| +++|+++|++| |+++|+|++++.....-........+.++++.|++|+ +.|+ ++
T Consensus 157 ~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~ 235 (367)
T 3euc_A 157 QPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL-GLAGIRL 235 (367)
T ss_dssp CCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT-TSCSCCE
T ss_pred CCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhh-cccccCc
Confidence 7999999999999999965 67788889999 9999999997742211111111112456888999999 5443 47
Q ss_pred eEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 043646 307 GILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDV 386 (625)
Q Consensus 307 G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~ 386 (625)
|++++++++.. .+.+. ....+++...... +...+ ......+.+.++.+.
T Consensus 236 G~~~~~~~~~~--~~~~~---------------------------~~~~~~~~~~~~a-~~~~l-~~~~~~~~~~~~~~~ 284 (367)
T 3euc_A 236 GYVAGDPQWLE--QLDKV---------------------------RPPYNVNVLTEAT-ALFAL-EHVAVLDEQAAQLRA 284 (367)
T ss_dssp EEEEECHHHHH--HHGGG---------------------------CCSSCCCHHHHHH-HHHHH-TTHHHHHHHHHHHHH
T ss_pred eeeeeCHHHHH--HHHHh---------------------------CCCCCCCHHHHHH-HHHHh-cCHHHHHHHHHHHHH
Confidence 99999877622 11110 0011233333221 12222 122335677888888
Q ss_pred HHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhh
Q 043646 387 YIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYG 466 (625)
Q Consensus 387 l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~ 466 (625)
+++++.+.|.++|++++..+ .+.++ +...+ +..++.+.|. ++||.+++|..|...
T Consensus 285 ~~~~l~~~l~~~~g~~~~~~----~~~~~-~~~~~-----------------~~~~l~~~l~-~~gi~v~~~~~~~~~-- 339 (367)
T 3euc_A 285 ERSRVAEGMAAHGGVTVFPS----AANFL-LARVP-----------------DAAQTFDRLL-ARKVLIKNVSKMHPL-- 339 (367)
T ss_dssp HHHHHHHHHHTSTTCEECCC----SSSEE-EEECS-----------------CHHHHHHHHH-TTTEECEECGGGCGG--
T ss_pred HHHHHHHHHHhCCCcEECCC----CCeEE-EEECC-----------------CHHHHHHHHH-HCCeEEEECCccCCC--
Confidence 99999999999999986543 23333 33322 2567888885 579999988776411
Q ss_pred HhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 467 HTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 467 ~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.++++|||++ +++|+++++++|+++++
T Consensus 340 -------------------------~~~~iRis~~---~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 340 -------------------------LANCLRVTVS---TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp -------------------------GTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred -------------------------CCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence 2489999987 99999999999998753
No 59
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.96 E-value=1.7e-27 Score=255.09 Aligned_cols=344 Identities=11% Similarity=0.102 Sum_probs=235.4
Q ss_pred eEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 043646 78 LTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRL 156 (625)
Q Consensus 78 ~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l 156 (625)
+.|+++...+ +.++.+.+++.+.+.....+++. +...+.......++++.+++++|.+ ++|+++ +|+++++ .+
T Consensus 49 i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~la~~~~~~--~~i~~~-sG~~a~~-~~ 122 (401)
T 2bwn_A 49 TVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGG--TRNISGTTAYHRRLEAEIAGLHQKE--AALVFS-SAYNAND-AT 122 (401)
T ss_dssp EECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCS--BTTTBCCBHHHHHHHHHHHHHTTCS--EEEEES-CHHHHHH-HH
T ss_pred EEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCC--cCcccCChHHHHHHHHHHHHHhCCC--cEEEEC-CcHHHHH-HH
Confidence 4577665533 23557999998888654444442 1111223456778999999999973 378886 8888433 33
Q ss_pred HHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeE
Q 043646 157 QEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPML 236 (625)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~l 236 (625)
..++. .+.+||. |+++.++|+++..+++..|++++.++.+ |+++|++++++. ..+++++
T Consensus 123 ~~~l~-------------~~~~gd~--Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~le~~l~~~-~~~~~~~ 181 (401)
T 2bwn_A 123 LSTLR-------------VLFPGLI--IYSDSLNHASMIEGIKRNAGPKRIFRHN-----DVAHLRELIAAD-DPAAPKL 181 (401)
T ss_dssp HHHHH-------------HHSTTCE--EEEETTCCHHHHHHHHHSCCCEEEECTT-----CHHHHHHHHHHS-CTTSCEE
T ss_pred HHHHh-------------cCCCCCE--EEECchhhHHHHHHHHHcCCeEEEEcCC-----CHHHHHHHHHhh-ccCCceE
Confidence 33221 1357774 9999999999999999999999999975 789999998741 1136899
Q ss_pred EEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccc---cC-CCCCC-CCCcEEEEcCCCCCCCCCCceEEEE
Q 043646 237 GSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKI---NL-RSRNI-DGYDAIFLATHKFLGGPGTPGILLI 311 (625)
Q Consensus 237 v~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~i---d~-~~~~~-~~~D~v~~S~hK~lggp~g~G~l~v 311 (625)
|++++++||||.+.|+++|.++|++||+++|+|++|+.|.... .+ ...+. +..|+++.|++|+|+.|+ |+++.
T Consensus 182 v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G--G~~~~ 259 (401)
T 2bwn_A 182 IAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG--GYIAA 259 (401)
T ss_dssp EEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC--EEEEE
T ss_pred EEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC--CEEec
Confidence 9999999999999999999999999999999999999653211 00 00110 146899999999998655 88888
Q ss_pred eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH-HHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 043646 312 SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM-IRAALAFWVKEYIGYEVIKKQEDVYIES 390 (625)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~-~~aal~~~~~~~~g~~~i~~~~~~l~~~ 390 (625)
++++.. .+... .....+..++++.... +.++++++ +..|.+.+.++.+.++++
T Consensus 260 ~~~~~~--~l~~~----------------------~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~ 313 (401)
T 2bwn_A 260 SARMVD--AVRSY----------------------APGFIFSTSLPPAIAAGAQASIAFL--KTAEGQKLRDAQQMHAKV 313 (401)
T ss_dssp CHHHHH--HHHHH----------------------CHHHHTSBCCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHH
T ss_pred CHHHHH--HHHHh----------------------CcCceecCCCCHHHHHHHHHHHHHH--HhcccHHHHHHHHHHHHH
Confidence 766521 11000 0012234455553322 23455544 444567888899999999
Q ss_pred HHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhh
Q 043646 391 ALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLL 470 (625)
Q Consensus 391 l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l 470 (625)
+.+.|.++ +++++.+ +++++.+.+..+ .+..++.+.|.+++||.++++..++.+.
T Consensus 314 l~~~L~~~-g~~~~~~----~~~~~~~~~~~~---------------~~~~~~~~~L~~~~gi~v~~~~~~~~~~----- 368 (401)
T 2bwn_A 314 LKMRLKAL-GMPIIDH----GSHIVPVVIGDP---------------VHTKAVSDMLLSDYGVYVQPINFPTVPR----- 368 (401)
T ss_dssp HHHHHHHH-TCCBCCC----SSSCEEEECCCH---------------HHHHHHHHHHHHHHCEECCEECTTTSCT-----
T ss_pred HHHHHHHC-CCcccCC----CCCeEEEEeCCh---------------HHHHHHHHHHHhcCCEEEeecCCCCCCC-----
Confidence 99999877 7777654 345666654211 1245788888656799998776443110
Q ss_pred cCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 471 AFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 471 ~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
..+++||+++.+++++|+++++++|++++++
T Consensus 369 ---------------------~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 399 (401)
T 2bwn_A 369 ---------------------GTERLRFTPSPVHDLKQIDGLVHAMDLLWAR 399 (401)
T ss_dssp ---------------------TCCEEEECCCTTSCHHHHHHHHHHHHHHC--
T ss_pred ---------------------CCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence 1268999999999999999999999987643
No 60
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.96 E-value=3.1e-27 Score=249.62 Aligned_cols=323 Identities=12% Similarity=0.000 Sum_probs=234.2
Q ss_pred CceEeccCCCC-CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 76 RRLTYADHTAS-GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 76 ~~~~Yld~~~~-~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
+..++|+.+.. .++++.|.+++.+.+.....++... ..++++++++++|++++ +|++| +|+++++.
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~-----------~~~lr~~la~~~~~~~~-~v~~~-~g~~~a~~ 96 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQNANKAHLYPDDS-----------MIELKSTLAQKYKVQNE-NIIIG-AGSDQVIE 96 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHHGGGTTSCCCTT-----------CHHHHHHHHHHHTCCGG-GEEEE-SSHHHHHH
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCCC-----------hHHHHHHHHHHhCCCcc-eEEEC-CCHHHHHH
Confidence 46788886644 3567899999998876443333321 13689999999998766 89998 78888899
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEec-CCCCCCCHHHHHHHHHHhhhCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGL-DDNGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~-~~~~~ld~~~L~~~l~~~~~~~~ 233 (625)
.++.++ +++||+ |+++.+.|+++...++..|++++.+++ +.++ +|+++|+++++ ++
T Consensus 97 ~~~~~l---------------~~~gd~--vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~-----~~ 153 (365)
T 3get_A 97 FAIHSK---------------LNSKNA--FLQAGVTFAMYEIYAKQCGAKCYKTQSITHNL-DEFKKLYETHK-----DE 153 (365)
T ss_dssp HHHHHH---------------CCTTCE--EEECSSCCTHHHHHHHHHTCEEEECSSSSCCH-HHHHHHHHHTT-----TT
T ss_pred HHHHHH---------------hCCCCE--EEEeCCChHHHHHHHHHcCCEEEEEecCCCCC-CCHHHHHHHhC-----CC
Confidence 888877 578885 999999999998889999999999998 5677 99999999987 58
Q ss_pred CeEEEEecccCccccccCHHHHHHHHH--HcCCEEEEeccCc------CCCccccCCCC-CCCCCcEEEEcCCCCCCCCC
Q 043646 234 PMLGSFSACSNVTGIYSDTRSIARLLH--QYGGFACFDFAAS------GPYVKINLRSR-NIDGYDAIFLATHKFLGGPG 304 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~l~~I~~la~--~~g~~vivD~A~~------~g~~~id~~~~-~~~~~D~v~~S~hK~lggp~ 304 (625)
+++|++++++||||.+.|+++|.++++ ++|+++++|++++ .+..+.+.... ...+.++++.|+||++|.|+
T Consensus 154 ~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 233 (365)
T 3get_A 154 IKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGG 233 (365)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTT
T ss_pred CCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcc
Confidence 999999999999999999999999888 6799999999987 32222222111 11245788899999997444
Q ss_pred -CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHH
Q 043646 305 -TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQ 383 (625)
Q Consensus 305 -g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~ 383 (625)
++|++++++++.. .+.. .....+++......+ ... +......+.+.++
T Consensus 234 ~r~G~~~~~~~~~~--~~~~---------------------------~~~~~~~~~~~~~~~-~~~-l~~~~~~~~~~~~ 282 (365)
T 3get_A 234 LRIGYGIANANIIS--AFYK---------------------------LRAPFNVSNLALKAA-VAA-MDDDEFTEKTLEN 282 (365)
T ss_dssp TCCEEEEECHHHHH--HHHH---------------------------HSCTTCSCHHHHHHH-HHH-HTCHHHHHHHHHH
T ss_pred hheEEEEcCHHHHH--HHHH---------------------------hcCCCCcCHHHHHHH-HHH-hCCHHHHHHHHHH
Confidence 5899999877622 1100 000112333332211 111 1122345677888
Q ss_pred HHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc
Q 043646 384 EDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG 463 (625)
Q Consensus 384 ~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~ 463 (625)
.+.+++++.+.|.++ ++++..+. +.++ +...+. . +..++.+.|.+ +||.+++|..|+
T Consensus 283 ~~~~~~~l~~~l~~~-g~~~~~~~----~~~~-~~~~~~--------------~-~~~~~~~~l~~-~gi~v~~g~~~~- 339 (365)
T 3get_A 283 NFSQMELYKEFAKKH-NIKIIDSY----TNFI-TYFFDE--------------K-NSTDLSEKLLK-KGIIIRNLKSYG- 339 (365)
T ss_dssp HHHHHHHHHHHHHHT-TCEECCCS----SSEE-EEECSS--------------S-CHHHHHHHHHT-TTEECEECGGGT-
T ss_pred HHHHHHHHHHHHHhC-CCEECCCC----CeEE-EEECCC--------------C-CHHHHHHHHHH-CCEEEEECccCC-
Confidence 888899999999887 78876542 3443 333322 1 36788888866 699999887653
Q ss_pred hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 464 PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
++++||+++ +++|+++++++|++++
T Consensus 340 -----------------------------~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 340 -----------------------------LNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp -----------------------------CSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred -----------------------------CCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 288999997 8999999999999875
No 61
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.96 E-value=5e-27 Score=250.13 Aligned_cols=342 Identities=13% Similarity=0.040 Sum_probs=235.9
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCC-CCcEEEeCChHHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQ-ADAIIFCGAGTTAAIK 154 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~-~~~vift~sGttaal~ 154 (625)
..++|+.+... +.++.+.+++.+.+.... . .|.......++.+++.+++.+.+|.+. .++|++| +|+++++.
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~----~-~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~-~g~~~a~~ 104 (388)
T 1j32_A 31 DVCSFSAGEPDFNTPKHIVEAAKAALEQGK----T-RYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVT-NGGKQSIF 104 (388)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHHTTC----C-SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEE-SHHHHHHH
T ss_pred CEEECCCCCCCCCCCHHHHHHHHHHHhcCC----C-CCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEc-CCHHHHHH
Confidence 45666655443 356788888887774310 0 111112245666677777777777532 2389998 78888899
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhhCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~~~ 232 (625)
.++.++ +++||+ |+++.++|+++...++..|++++.++.+. ++.+|+++|+++++ +
T Consensus 105 ~~~~~~---------------~~~gd~--vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~-----~ 162 (388)
T 1j32_A 105 NLMLAM---------------IEPGDE--VIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAIT-----P 162 (388)
T ss_dssp HHHHHH---------------CCTTCE--EEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCC-----T
T ss_pred HHHHHh---------------cCCCCE--EEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcC-----c
Confidence 988877 468885 99999999999888888999999999875 46789999999987 5
Q ss_pred CCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCcc----ccCCCCCC--CCCcEEEEcCCCCCCCC
Q 043646 233 RPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVK----INLRSRNI--DGYDAIFLATHKFLGGP 303 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~----id~~~~~~--~~~D~v~~S~hK~lggp 303 (625)
++++|++++++||||.+.| +++|+++|++||+++|+|++++..... ..+..+.. .+.|+++.|+||++|.|
T Consensus 163 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~ 242 (388)
T 1j32_A 163 KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMT 242 (388)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCT
T ss_pred CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCc
Confidence 7899999999999999965 899999999999999999998754321 12222110 24689999999999634
Q ss_pred C-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHH
Q 043646 304 G-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKK 382 (625)
Q Consensus 304 ~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~ 382 (625)
+ .+|++++++++. +.+.+. ......+++++.+. ++.+.+.......+.+.+
T Consensus 243 G~r~G~~~~~~~~~--~~l~~~------------------------~~~~~~~~~~~~~~--a~~~~l~~~~~~~~~~~~ 294 (388)
T 1j32_A 243 GWRVGFLAGPVPLV--KAATKI------------------------QGHSTSNVCTFAQY--GAIAAYENSQDCVQEMLA 294 (388)
T ss_dssp TTCCEEEECCHHHH--HHHHHH------------------------HHTTTCSCCHHHHH--HHHHHHHSCSHHHHHHHH
T ss_pred ccceEEEEeCHHHH--HHHHHH------------------------HhhcccCCCHHHHH--HHHHHHhCCcHHHHHHHH
Confidence 2 289999988762 111110 00111223333222 222222111123566778
Q ss_pred HHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC
Q 043646 383 QEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA 462 (625)
Q Consensus 383 ~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~ 462 (625)
+.+.+++++.+.|+++|++++..+. .+.+.+...+. .+.+..++.+.|.+++||.+++|..|.
T Consensus 295 ~~~~~~~~l~~~L~~~~g~~~~~~~----~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~gi~v~~g~~~~ 357 (388)
T 1j32_A 295 AFAERRRYMLDALNAMPGLECPKPD----GAFYMFPSIAK-------------TGRSSLDFCSELLDQHQVATVPGAAFG 357 (388)
T ss_dssp HHHHHHHHHHHHHHTCTTCBCCCCC----BTTEECCBCGG-------------GTCCHHHHHHHHHHHHCEECEEGGGGT
T ss_pred HHHHHHHHHHHHHhhCCCCcccCCC----eeEEEEEecCC-------------CCCCHHHHHHHHHHhCCEEEeChhhhC
Confidence 8888899999999988888876553 34443332221 023467888888766799999887654
Q ss_pred chhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 463 GPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.++++||+++ +++++++++++.|++++++
T Consensus 358 -----------------------------~~~~iRis~~--~~~~~i~~~~~~l~~~l~~ 386 (388)
T 1j32_A 358 -----------------------------ADDCIRLSYA--TDLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp -----------------------------CTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------CCCcEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 1378999997 6999999999999988764
No 62
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.95 E-value=1.7e-26 Score=249.83 Aligned_cols=325 Identities=13% Similarity=0.064 Sum_probs=231.1
Q ss_pred cchHHHHHHHHHhhCCCC-CCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 88 RSLRYIEDYIINNVLPFY-GNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 88 ~~p~~v~ea~~~~l~~~~-~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
..++.+.+++.+.+..+. +++. +....+......++++++++++|.+ + .+++ ++|+++++ .++.++
T Consensus 78 ~~~~~v~~a~~~~~~~~~~~~~~---~~~~~G~~~~~~~l~~~la~~~g~~-~-~i~~-~sGs~a~~-~al~~l------ 144 (427)
T 2w8t_A 78 TFDPDVIAAGKEALEKFGSGTCG---SRMLNGTFHDHMEVEQALRDFYGTT-G-AIVF-STGYMANL-GIISTL------ 144 (427)
T ss_dssp GGCHHHHHHHHHHHHHHCSCCCS---CTTTTCCCHHHHHHHHHHHHHHTCS-E-EEEE-SCHHHHHH-HHHHHH------
T ss_pred CCCHHHHHHHHHHHHHhCCCCcc---cccccCCcHHHHHHHHHHHHHhCCC-c-eEEe-cCcHHHHH-HHHHHh------
Confidence 366889999988775421 1211 1112223466788999999999975 2 4555 48887644 445554
Q ss_pred hhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcc
Q 043646 167 IMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVT 246 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~T 246 (625)
+++||. |+++..+|.++...++..|++++.++. +|+++|++++++.. ..++++|++++++|+|
T Consensus 145 ---------~~~gd~--vl~~~~~h~~~~~~~~~~g~~~~~~~~-----~d~~~le~~l~~~~-~~~~~~v~~~~~~n~t 207 (427)
T 2w8t_A 145 ---------AGKGEY--VILDADSHASIYDGCQQGNAEIVRFRH-----NSVEDLDKRLGRLP-KEPAKLVVLEGVYSML 207 (427)
T ss_dssp ---------SCTTCE--EEEETTCCHHHHHHHHHSCSEEEEECT-----TCHHHHHHHHHTSC-SSSCEEEEEESEETTT
T ss_pred ---------cCCCCE--EEECCcccHHHHHHHHHcCCeeEEeCC-----CCHHHHHHHHHhcc-CCCCeEEEEcCCCCCC
Confidence 467874 999999999999999999999998873 58999999998410 0178999999999999
Q ss_pred ccccCHHHHHHHHHHcCCEEEEeccCcCCCcc---------ccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccc
Q 043646 247 GIYSDTRSIARLLHQYGGFACFDFAASGPYVK---------INLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQ 317 (625)
Q Consensus 247 G~~~~l~~I~~la~~~g~~vivD~A~~~g~~~---------id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~ 317 (625)
|.+.|+++|.++|++||+++|+|++|+.+... .++. .++|+++.|+||++| +.| |++++++++.
T Consensus 208 G~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~----~~~di~~~s~sK~~g-~~g-G~v~~~~~l~- 280 (427)
T 2w8t_A 208 GDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE----GQIDFVVGTFSKSVG-TVG-GFVVSNHPKF- 280 (427)
T ss_dssp TEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCT----TCCSEEEEESSSTTC-SCC-EEEEECCTTG-
T ss_pred CCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCC----cCCcEEEecchhhhc-cCC-CEEEeCHHHH-
Confidence 99999999999999999999999999977654 2332 267999999999998 555 9999988772
Q ss_pred cCCCCCcccCCceEEeeccccccccccccchhhhh-cCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Q 043646 318 LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE-NGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGR 394 (625)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~-~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~ 394 (625)
+.+.+. ...+ ..++++..+.. .++++.+ + ..+.+.++.+.+++++.+.
T Consensus 281 -~~l~~~------------------------~~~~~~~~~~~~~~~aa~~~al~~~--~--~~~~~~~~~~~~~~~l~~~ 331 (427)
T 2w8t_A 281 -EAVRLA------------------------CRPYIFTASLPPSVVATATTSIRKL--M--TAHEKRERLWSNARALHGG 331 (427)
T ss_dssp -GGGGGT------------------------CHHHHSSCCCCHHHHHHHHHHHHHH--T--SCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHh------------------------cccccccCCCCHHHHHHHHHHHHHH--h--cCHHHHHHHHHHHHHHHHH
Confidence 222111 0001 12333433332 2344443 2 2467788888899999999
Q ss_pred hCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCCh
Q 043646 395 ILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQ 474 (625)
Q Consensus 395 L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~ 474 (625)
|.++ ++.+..+. ..++++.+.+... .....+.+.|.+ .||.+++|..|+.+.
T Consensus 332 L~~~-g~~~~~~~--~~~~~~~~~~~~~---------------~~~~~l~~~L~~-~Gi~v~~~~~~~~~~--------- 383 (427)
T 2w8t_A 332 LKAM-GFRLGTET--CDSAIVAVMLEDQ---------------EQAAMMWQALLD-GGLYVNMARPPATPA--------- 383 (427)
T ss_dssp HHHH-TCEESCSS--CCSSEEEEEESSH---------------HHHHHHHHHHHH-TTEECEEECTTTSCT---------
T ss_pred HHHc-CCcccCCC--CCCCEEEEEECCH---------------HHHHHHHHHHHH-CCeEEeeeCCCCCCC---------
Confidence 9877 77776432 1456666655321 124578888866 599999887665221
Q ss_pred hhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 475 TRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 475 ~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
..+++||+++.+++++|+++++++|++++.+.
T Consensus 384 -----------------~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~ 415 (427)
T 2w8t_A 384 -----------------GTFLLRCSICAEHTPAQIQTVLGMFQAAGRAV 415 (427)
T ss_dssp -----------------TCEEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 14789999999999999999999999987664
No 63
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.95 E-value=2.5e-26 Score=251.83 Aligned_cols=394 Identities=14% Similarity=0.070 Sum_probs=252.5
Q ss_pred ccccccCCCCCCCCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchh
Q 043646 36 CSEFKNDHHPPHSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYV 115 (625)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~ 115 (625)
++.+.....+| ..+..+.+..+++.-- .+..++ ...+||+ +.+....+.+.+++.+.+.. .+|... ...
T Consensus 33 ~~~~~~~~~lp-~~~e~~~~~~~~~l~~-~~~~~~-----~~~~~lg-~~~~~~~p~v~~~~~~~~~~--~~~~~~-~~~ 101 (474)
T 1wyu_B 33 EHLREVPPRLP-EVDELTLVRHYTGLSR-RQVGVD-----TTFYPLG-SCTMKYNPKLHEEAARLFAD--LHPYQD-PRT 101 (474)
T ss_dssp GGBCSSCCCCC-CCCHHHHHHHHHHHHT-TCCCTT-----TSCCCBT-TTCCCCCCHHHHHHHHTTSS--CCTTSC-GGG
T ss_pred HHhccCCCCCC-CCCHHHHHHHHHHHHh-CCCCcc-----cCccccc-cccccCCHHHHHHHHHHHHh--cCCCCc-hhh
Confidence 33333344556 4555566666665442 111111 2457888 45555556677777665322 233221 114
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH-HHHHhcccccchhhhhhhhccCCCC---ceEEEEcCCCC
Q 043646 116 GQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR-LQEVMGITVPSIMRDKLITSLRDEE---RWVVFLGPYEH 191 (625)
Q Consensus 116 ~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~-l~~~l~~~~~~~~~~~~~~~l~~gd---~~~Vlv~~~~h 191 (625)
+.+..++..++++++++++|.+. .++++++|+.+ +.. +..+... ..++|| +..|+++...|
T Consensus 102 ~~g~~~l~~~l~~~la~~~g~~~--~~~~~~ggt~a-~~~al~~~~~~------------~~~~Gd~~~r~~Vlv~~~~h 166 (474)
T 1wyu_B 102 AQGALRLMWELGEYLKALTGMDA--ITLEPAAGAHG-ELTGILIIRAY------------HEDRGEGRTRRVVLVPDSAH 166 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHH-HHHHHHHHHHH------------HHHTTCTTTCCEEEEETTSC
T ss_pred ChHHHHHHHHHHHHHHHHHCCCc--eeecChHHHHH-HHHHHHHHHHH------------HHhcCCccCCCEEEEeCCcC
Confidence 56788999999999999999863 36677555544 443 2222110 013454 23599999999
Q ss_pred chhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccc-cCHHHHHHHHHHcCCEEEEec
Q 043646 192 HSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIY-SDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 192 ~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~-~~l~~I~~la~~~g~~vivD~ 270 (625)
+++..+++..|++++.|+++.++.+|+++|+++++ +++++|+++++ |+||.+ .|+++|+++||+||+++|+|+
T Consensus 167 ~~~~~~~~~~G~~vv~v~~~~~~~~d~~~L~~~i~-----~~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~De 240 (474)
T 1wyu_B 167 GSNPATASMAGYQVREIPSGPEGEVDLEALKRELG-----PHVAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDG 240 (474)
T ss_dssp THHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCS-----TTEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEG
T ss_pred hhhHHHHHHCCCEEEEecCCCCCCcCHHHHHHhhC-----CCceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeC
Confidence 99998898899999999998889999999999997 57899999997 689998 799999999999999999999
Q ss_pred cCcCCCc-cccCCCCCCCCCcEEEEcCCCCCCCCC-----CceEEEEeccccccCCCC-Cccc-CCceEEeecccccccc
Q 043646 271 AASGPYV-KINLRSRNIDGYDAIFLATHKFLGGPG-----TPGILLISKALYQLGSSP-PSTC-GGGTVNYVNAFDEKDT 342 (625)
Q Consensus 271 A~~~g~~-~id~~~~~~~~~D~v~~S~hK~lggp~-----g~G~l~v~~~~~~l~~~~-p~~~-ggg~v~~~~~~~~~~~ 342 (625)
+++.+.. ..+...+ ++|++++|+||+|++|. ++|++++++++ ++.+. +... ++....+ .+.
T Consensus 241 a~~~~~~g~~~~~~~---g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l--~~~l~~~~~~~~g~~~~~--~~~---- 309 (474)
T 1wyu_B 241 ANLNAIMGWARPGDM---GFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHL--APYLPVPLVERGEEGFYL--DFD---- 309 (474)
T ss_dssp GGGGGTTTTCCHHHH---TCSEEECCTTTTTCCCCTTSCCCCCCEEECGGG--GGGCCSCEEEECSSCEEE--ECC----
T ss_pred chhhhhccCCCcccC---CCcEEEEeCccccccCCCCCCCCeEEEEEcHHH--HHhCCCCeeeccCCeeEe--ccc----
Confidence 9875543 2222223 68999999999999884 58999999987 33443 2211 1111100 000
Q ss_pred ccccchhhhhcCCChhHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEecc
Q 043646 343 LYLEDIEERENGGTPQIVQMIRAALAFWV-KEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYS 421 (625)
Q Consensus 343 ~~~~~~~~~~~~gt~~~~~~~~aal~~~~-~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~ 421 (625)
......++..++.+.... .+++.++. ....+.+.+.++...+++++.+.|.++ ++++..+.. ....+.+.+ +
T Consensus 310 --~~~~~~~~~~~~~~~~~~-~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~--~~~~~~~~~-~ 382 (474)
T 1wyu_B 310 --RPKSIGRVRSFYGNFLAL-VRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK-GYRVPYDGP--SMHEFVAQP-P 382 (474)
T ss_dssp --CTTCCCCSSSTTSCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCSSCSS--CCSCEEEBC-S
T ss_pred --CcccCcccccCcCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcEecCCCC--cceEEEEEc-C
Confidence 000012233344454433 33344431 123345566888888999999999887 777633211 111122211 1
Q ss_pred CCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecC
Q 043646 422 TTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFP 501 (625)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~ 501 (625)
. +.+..++++.|.+ +||.+. +..+. . ..++++||+++
T Consensus 383 ~--------------~~~~~~l~~~L~~-~Gi~~~-~~~~~----~-----------------------~~~~~lRis~~ 419 (474)
T 1wyu_B 383 E--------------GFRALDLAKGLLE-LGFHPP-TVYFP----L-----------------------IVKEALMVEPT 419 (474)
T ss_dssp T--------------TCCHHHHHHHHHH-TTCCCC-EESCS----T-----------------------TSTTCEEECCC
T ss_pred C--------------CCCHHHHHHHHHH-CCcccc-ccccc----c-----------------------ccCCEEEEEee
Confidence 1 2346789998876 599863 32221 0 01478999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHh
Q 043646 502 YYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 502 ~~~t~edid~ll~aL~~~~~~ 522 (625)
.++|++|+++++++|++++.+
T Consensus 420 ~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 420 ETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp TTSCHHHHHHHHHHHHHHHTS
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999988765
No 64
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.95 E-value=2.6e-27 Score=252.84 Aligned_cols=341 Identities=16% Similarity=0.099 Sum_probs=236.6
Q ss_pred EeccCCCCCc----chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 79 TYADHTASGR----SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 79 ~Yld~~~~~~----~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
-|+|.++..+ .++.+.+++.+.+..+ .++... +.......+...++++++++++|.+ + .++++ +|+. ++.
T Consensus 44 ~~id~~~~~~~g~~~~~~v~~a~~~~~~~~-~~~~~~-~~~~~g~~~~~~~l~~~la~~~~~~-~-~i~~~-sGt~-a~~ 117 (399)
T 3tqx_A 44 EVLNFCANNYLGLADHPALIKTAQTVVEQY-GFGMAS-VRFICGTQTIHKELEKDISEFLGTD-D-TILYS-SCFD-ANG 117 (399)
T ss_dssp EEEECSSCCTTSCTTCHHHHHHHHHHHHHH-CSCCCS-CCCCCCCBHHHHHHHHHHHHHHTCS-E-EEEES-CHHH-HHH
T ss_pred eEEEeeccCcccccCCHHHHHHHHHHHHHh-CCCCCC-cCccccCchHHHHHHHHHHHHHCCC-c-EEEEC-chHH-HHH
Confidence 3666655543 3588999988877542 222111 1111223456788999999999975 2 56665 7866 555
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhh-CCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKA-AKR 233 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~-~~~ 233 (625)
.++.++ +++||. |+++.++|+++...++..|++++.++. +|+++|++++++... ..+
T Consensus 118 ~~l~~~---------------~~~gd~--v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~ 175 (399)
T 3tqx_A 118 GLFETL---------------LGPEDA--IISDELNHASIIDGIRLCKAQRYRYKN-----NAMGDLEAKLKEADEKGAR 175 (399)
T ss_dssp TTHHHH---------------CCTTCE--EEEETTCCHHHHHHHHSCCSEEEEECT-----TCTTHHHHHHHHHHTTTCS
T ss_pred HHHHHh---------------cCCCCE--EEECCcccHHHHHHHHHcCCceeEeCC-----CCHHHHHHHHHhhhccCCC
Confidence 565555 478885 999999999999899999999999986 477899999885321 127
Q ss_pred CeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCC----CCC-CCCCcEEEEcCCCCCCCCCCceE
Q 043646 234 PMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLR----SRN-IDGYDAIFLATHKFLGGPGTPGI 308 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~----~~~-~~~~D~v~~S~hK~lggp~g~G~ 308 (625)
+++|++++++||||.+.|+++|.++|++||+++|+|++++.+....+.. ..+ ..+.|+++.|+||+++|+.| |+
T Consensus 176 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~ 254 (399)
T 3tqx_A 176 FKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASG-GY 254 (399)
T ss_dssp SEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCC-EE
T ss_pred ceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCce-EE
Confidence 9999999999999999999999999999999999999997665332211 111 12679999999999997776 99
Q ss_pred EEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHH
Q 043646 309 LLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDV 386 (625)
Q Consensus 309 l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~ 386 (625)
++.++++.. .+.... ......++++..+.. .++++.. . .+.+.+.++.++
T Consensus 255 ~~~~~~~~~--~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~l~~~--~-~~~~~~~~~~~~ 306 (399)
T 3tqx_A 255 TSGHKEIIE--WLRNRS-----------------------RPYLFSNTVAPVIVATSLKVLELL--K-TEGPQLRKQLQE 306 (399)
T ss_dssp EEECHHHHH--HHHHHC-----------------------HHHHSSCCCCHHHHHHHHHHHHHH--H-HTHHHHHHHHHH
T ss_pred EEcCHHHHH--HHHHhC-----------------------cceeccCCCcHHHHHHHHHHHHHH--h-hccHHHHHHHHH
Confidence 999887732 111000 000112344444332 2333332 1 457788889999
Q ss_pred HHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhh
Q 043646 387 YIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYG 466 (625)
Q Consensus 387 l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~ 466 (625)
+++++.+.|.++ ++++..+ .++++.+.+... .+..++.+.|.+ +||.+++++++..+.
T Consensus 307 ~~~~l~~~L~~~-g~~~~~~----~~~~~~~~~~~~---------------~~~~~~~~~l~~-~gi~v~~~~~~~~~~- 364 (399)
T 3tqx_A 307 NSRYFRAGMEKL-GFQLVPG----NHPIIPVMLGDA---------------QLATNMADHLLQ-EGIYVVGFSYPVVPM- 364 (399)
T ss_dssp HHHHHHHHHHHH-TCCBCCC----SSSEEEEEEECH---------------HHHHHHHHHHHH-TTEECCEECTTTSCT-
T ss_pred HHHHHHHHHHHc-CCCcCCC----CCCEEEEEeCCH---------------HHHHHHHHHHHH-CCCEEeeeCCCCCCC-
Confidence 999999999876 6666533 345655554321 124678888866 699999765443111
Q ss_pred HhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 467 HTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 467 ~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.++++||+++++++++|+++++++|++++++.
T Consensus 365 -------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 365 -------------------------GKARIRVQMSAVHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp -------------------------TCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred -------------------------CCceEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence 24799999999999999999999999988763
No 65
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.95 E-value=1.7e-26 Score=246.49 Aligned_cols=334 Identities=12% Similarity=0.033 Sum_probs=234.5
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAA 152 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaa 152 (625)
+..++|+.+... +.++.+.+++.+.+.... . .|.......++.+++.+++.+.+|. +++ +|++| +|++++
T Consensus 41 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~----~-~y~~~~g~~~lr~~la~~~~~~~g~~~~~~-~v~~~-~g~t~a 113 (389)
T 1o4s_A 41 EDVINLTAGEPDFPTPEPVVEEAVRFLQKGE----V-KYTDPRGIYELREGIAKRIGERYKKDISPD-QVVVT-NGAKQA 113 (389)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHTTCC----C-CCCCTTCCHHHHHHHHHHHHHHHTCCCCGG-GEEEE-SHHHHH
T ss_pred CCEEEccCCCCCCCCCHHHHHHHHHHHhcCC----C-CCCCCCCCHHHHHHHHHHHHHHhCCCCCHH-HEEEe-cCHHHH
Confidence 356788776654 456889999988774321 0 1111112344555555566555576 344 89998 788888
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhh
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKA 230 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~ 230 (625)
+..++.++ +++||+ |+++.+.|+++...++..|++++.++.++ ++.+|+++|+++++
T Consensus 114 l~~~~~~l---------------~~~gd~--Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---- 172 (389)
T 1o4s_A 114 LFNAFMAL---------------LDPGDE--VIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLV---- 172 (389)
T ss_dssp HHHHHHHH---------------CCTTCE--EEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCC----
T ss_pred HHHHHHHh---------------CCCCCE--EEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcc----
Confidence 99988877 467885 99999999999888888999999999875 45789999999887
Q ss_pred CCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCcc---ccCCCCC-CCCCcEEEEcCCCCCCCC
Q 043646 231 AKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVK---INLRSRN-IDGYDAIFLATHKFLGGP 303 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~---id~~~~~-~~~~D~v~~S~hK~lggp 303 (625)
+++++|++++++||||.+.| +++|+++|+++|+++|+|++++.+... .++..+. ..+.|+++.|+||++|.|
T Consensus 173 -~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 251 (389)
T 1o4s_A 173 -GKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMT 251 (389)
T ss_dssp -TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCG
T ss_pred -cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCc
Confidence 47899999999999999977 899999999999999999998865431 2222211 126799999999999734
Q ss_pred C-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHH
Q 043646 304 G-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKK 382 (625)
Q Consensus 304 ~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~ 382 (625)
+ .+|++++++++.. .+.+. ......+++++.+. ++.+.+ + .+.+.+.+
T Consensus 252 G~r~G~l~~~~~~~~--~l~~~------------------------~~~~~~~~~~~~~~--a~~~~l--~-~~~~~~~~ 300 (389)
T 1o4s_A 252 GWRVGYLISSEKVAT--AVSKI------------------------QSHTTSCINTVAQY--AALKAL--E-VDNSYMVQ 300 (389)
T ss_dssp GGCCEEEECCHHHHH--HHHHH------------------------HHHHTCSCCHHHHH--HHHHHT--T-CCCHHHHH
T ss_pred ccceEEEEeCHHHHH--HHHHH------------------------hhhcccCCCHHHHH--HHHHHH--h-ccHHHHHH
Confidence 3 2799999887621 11100 01111233333222 222232 2 23677888
Q ss_pred HHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC
Q 043646 383 QEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA 462 (625)
Q Consensus 383 ~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~ 462 (625)
+.+.+++++.+.|.++ ++++..+ ..+.+.+...+ .+..++.+.|.+++||.+++|..|.
T Consensus 301 ~~~~~~~~l~~~L~~~-g~~~~~~----~~~~~~~~~~~----------------~~~~~l~~~l~~~~gi~v~~g~~f~ 359 (389)
T 1o4s_A 301 TFKERKNFVVERLKKM-GVKFVEP----EGAFYLFFKVR----------------GDDVKFCERLLEEKKVALVPGSAFL 359 (389)
T ss_dssp HHHHHHHHHHHHHHHT-TCCCCCC----SBSSEEEEECS----------------SCHHHHHHHHHHHHCEECEEGGGGT
T ss_pred HHHHHHHHHHHHHHhc-CCeeecC----CcceEEEEeCC----------------CCHHHHHHHHHHHCCEEEeCchhcC
Confidence 8888899999999877 7766544 23555444332 1256788888656899999886654
Q ss_pred chhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 463 GPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.++++||+++. ++++++++++.|++++.
T Consensus 360 -----------------------------~~~~~Ris~~~--~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 360 -----------------------------KPGFVRLSFAT--SIERLTEALDRIEDFLN 387 (389)
T ss_dssp -----------------------------CTTEEEEECCS--CHHHHHHHHHHHHHHHT
T ss_pred -----------------------------CCCeEEEEEeC--CHHHHHHHHHHHHHHHh
Confidence 13789999983 89999999999998764
No 66
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.95 E-value=1.6e-26 Score=241.05 Aligned_cols=316 Identities=14% Similarity=0.051 Sum_probs=224.6
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
+..++|+.+... ++++.+.+++.+.+......| .....++++.+++++|++++ +|++| +|+++++.
T Consensus 16 ~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~~y~-----------~~~~~~lr~~la~~~~~~~~-~i~~t-~G~~~~l~ 82 (337)
T 3p1t_A 16 AQAVCLAFNENPEAVEPRVQAAIAAAAARINRYP-----------FDAEPRVMRKLAEHFSCPED-NLMLV-RGIDECFD 82 (337)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHHGGGTTSCC-----------TTHHHHHHHHHHHHHTSCGG-GEEEE-SHHHHHHH
T ss_pred CCceEeeCCCCCCCCCHHHHHHHHHhhhhhccCC-----------CCchHHHHHHHHHHhCcCHH-HEEEe-CCHHHHHH
Confidence 568999988543 567889999988764321111 12356789999999999776 89998 89999999
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
.++.++ +||+ |+++.+.|+++...++..|++++.+++++++.+|+++|+++ .++
T Consensus 83 ~~~~~~-----------------~gd~--vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~-------~~~ 136 (337)
T 3p1t_A 83 RISAEF-----------------SSMR--FVTAWPGFDGYRARIAVSGLRHFEIGLTDDLLLDPNDLAQV-------SRD 136 (337)
T ss_dssp HHHHHS-----------------TTSE--EEEESSSCSHHHHHHTTSCCEEEEECBCTTSSBCHHHHTTC-------CTT
T ss_pred HHHHhc-----------------CCCe--EEEeCCCcHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHhh-------cCC
Confidence 887653 6775 89999999999888888999999999988888999998764 368
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcC--CCccccCCCCCCCCCcEEEEcCCCCCCCC-CCceEEEE
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASG--PYVKINLRSRNIDGYDAIFLATHKFLGGP-GTPGILLI 311 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~--g~~~id~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v 311 (625)
+++++++++||||.+.|+++|.++|+++++ +++|++++. +....... ..+.++++.|++|++|.| .++|++++
T Consensus 137 ~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~---~~~~~i~~~S~sK~~g~~G~r~G~~~~ 212 (337)
T 3p1t_A 137 DCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSFRARGLA---YGENELVFRSFSKSYGLAGLRLGALFG 212 (337)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCC---CBTTEEEEEESSSTTCCTTTCCEEEEC
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhccccccccc---cCCCEEEEeeCchhccCcchheEEEEe
Confidence 999999999999999999999999999997 566999762 11111111 125678999999999734 34799998
Q ss_pred eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 043646 312 SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESA 391 (625)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l 391 (625)
++++.. .+... ...++++..+... +..++ ......+...++...+++++
T Consensus 213 ~~~~~~--~l~~~---------------------------~~~~~~~~~~~~a-~~~~l-~~~~~~~~~~~~~~~~~~~l 261 (337)
T 3p1t_A 213 PSELIA--AMKRK---------------------------QWFCNVGTLDLHA-LEAAL-DNDRAREAHIAKTLAQRRRV 261 (337)
T ss_dssp CHHHHH--HHHTT---------------------------SCTTCSCHHHHHH-HHHHH-TCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHH--HHHhh---------------------------cCCCCCCHHHHHH-HHHHh-CCHHHHHHHHHHHHHHHHHH
Confidence 887632 11110 0112333333221 12222 12122445556666678888
Q ss_pred HHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhc
Q 043646 392 LGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLA 471 (625)
Q Consensus 392 ~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~ 471 (625)
.+.|.++ ++++..+ .++++.+.... ..++.+.|. ++||.+++|..|+
T Consensus 262 ~~~L~~~-g~~~~~~----~~~~~~~~~~~------------------~~~~~~~l~-~~gi~v~~g~~~~--------- 308 (337)
T 3p1t_A 262 ADALRGL-GYRVASS----EANFVLVENAA------------------GERTLRFLR-ERGIQVKDAGQFG--------- 308 (337)
T ss_dssp HHHHHHT-TCCBCCC----SSSEEEEECTT------------------THHHHHHHH-HTTEECEEGGGGT---------
T ss_pred HHHHHHC-cCEECCC----CCeEEEEEcCC------------------HHHHHHHHH-HCCeEEEECccCC---------
Confidence 8888877 6766544 23444443321 346777774 5799999988765
Q ss_pred CChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 472 FDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 472 ~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.++++|||++ +++|+++++++|+++.+
T Consensus 309 --------------------~~~~iRis~~---~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 309 --------------------LHHHIRISIG---REEDNDRLLAALAEYSD 335 (337)
T ss_dssp --------------------CCSEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred --------------------CCCeEEEecC---CHHHHHHHHHHHHHHhh
Confidence 2489999997 89999999999998754
No 67
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.95 E-value=1.1e-26 Score=248.44 Aligned_cols=336 Identities=15% Similarity=0.091 Sum_probs=232.0
Q ss_pred EeccCCCCCc----chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 79 TYADHTASGR----SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 79 ~Yld~~~~~~----~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
.|+|.++..+ .++.+.+++.+.+.. +++.... +.+.........++++.+++++|.+ + .+++ ++|+.+ +.
T Consensus 46 ~~id~~~~~~~g~~~~~~v~~a~~~~~~~-~~~~~~~-~~~~~g~~~~~~~l~~~la~~~g~~-~-~i~~-~sGs~a-~~ 119 (401)
T 1fc4_A 46 HVINFCANNYLGLANHPDLIAAAKAGMDS-HGFGMAS-VRFICGTQDSHKELEQKLAAFLGME-D-AILY-SSCFDA-NG 119 (401)
T ss_dssp EEEECCCSCTTSCTTCHHHHHHHHHHHHH-HCSCCCS-CHHHHCCBHHHHHHHHHHHHHHTCS-E-EEEE-SCHHHH-HH
T ss_pred cEEEeeccCcccccCCHHHHHHHHHHHHH-hCCCCCC-CCcccCCcHHHHHHHHHHHHHhCCC-c-EEEe-CChHHH-HH
Confidence 4666555433 378899999887743 2222211 1122112456788999999999986 3 5555 488774 55
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhh-CCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKA-AKR 233 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~-~~~ 233 (625)
.++.++ +++||. |+++.++|.++...++..|++++.++. +|+++|++++++... ..+
T Consensus 120 ~~~~~~---------------~~~gd~--v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~ 177 (401)
T 1fc4_A 120 GLFETL---------------LGAEDA--IISDALNHASIIDGVRLCKAKRYRYAN-----NDMQELEARLKEAREAGAR 177 (401)
T ss_dssp TTHHHH---------------CCTTCE--EEEETTCCHHHHHHHHTSCSEEEEECT-----TCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHH---------------cCCCCE--EEEcchhHHHHHHHHHHcCCceEEECC-----CCHHHHHHHHHHhhccCCC
Confidence 565655 467874 999999999988888888999998873 489999999974211 116
Q ss_pred CeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCc-c--------ccCCCCCCCCCcEEEEcCCCCCCCCC
Q 043646 234 PMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV-K--------INLRSRNIDGYDAIFLATHKFLGGPG 304 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~-~--------id~~~~~~~~~D~v~~S~hK~lggp~ 304 (625)
+++|++++++||||.+.|+++|.++|++||+++|+|++++.+.. + .++. .+.|+++.|+||+++++.
T Consensus 178 ~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~----~~~di~~~s~sK~~~~~~ 253 (401)
T 1fc4_A 178 HVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVM----GRVDIITGTLGKALGGAS 253 (401)
T ss_dssp SEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCT----TCCSEEEEESSSTTCSSS
T ss_pred ceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCC----cCCcEEEecchhhccCCC
Confidence 89999999999999999999999999999999999999975553 2 2222 157999999999995566
Q ss_pred CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH--HHHHHHHHHHhhcCHHHHHH
Q 043646 305 TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM--IRAALAFWVKEYIGYEVIKK 382 (625)
Q Consensus 305 g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~--~~aal~~~~~~~~g~~~i~~ 382 (625)
| |++++++++.. .+.+.. ....+ .++++.... +.++++.. +. .+.+.+
T Consensus 254 g-G~~~~~~~~~~--~l~~~~----------------------~~~~~-~~~~~~~~~~a~~~~l~~~--~~--~~~~~~ 303 (401)
T 1fc4_A 254 G-GYTAARKEVVE--WLRQRS----------------------RPYLF-SNSLAPAIVAASIKVLEMV--EA--GSELRD 303 (401)
T ss_dssp C-EEEEECHHHHH--HHHHHC----------------------HHHHH-SCCCCHHHHHHHHHHHHHH--HT--CHHHHH
T ss_pred C-EEEEcCHHHHH--HHHHhC----------------------cCcee-CCCCCHHHHHHHHHHHHHH--hc--CHHHHH
Confidence 6 99999877622 111000 00111 223333332 23344443 21 356778
Q ss_pred HHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC
Q 043646 383 QEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA 462 (625)
Q Consensus 383 ~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~ 462 (625)
+.+++++++.+.|.++ +++++.+ .+.++.+.+... .+..++.+.|.+ +||.+++|..|+
T Consensus 304 ~~~~~~~~l~~~L~~~-g~~~~~~----~~~~~~~~~~~~---------------~~~~~l~~~l~~-~gi~v~~~~~~~ 362 (401)
T 1fc4_A 304 RLWANARQFREQMSAA-GFTLAGA----DHAIIPVMLGDA---------------VVAQKFARELQK-EGIYVTGFFYPV 362 (401)
T ss_dssp HHHHHHHHHHHHHHHT-TCCBCCS----SSSEEEEEEECH---------------HHHHHHHHHHHH-TTEECCEECTTS
T ss_pred HHHHHHHHHHHHHHHc-CCcccCC----CCCEEEEEcCCh---------------HHHHHHHHHHHH-CCcEEeeecCCC
Confidence 8888899999999877 6666522 445555554211 124578888865 599999887764
Q ss_pred chhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 463 GPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.+. ..+++||+++.+++++|+++++++|++++++.
T Consensus 363 ~~~--------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 363 VPK--------------------------GQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp SCT--------------------------TCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCC--------------------------CCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 221 14789999999999999999999999988753
No 68
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.95 E-value=8.3e-27 Score=248.50 Aligned_cols=342 Identities=13% Similarity=0.068 Sum_probs=233.3
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCc-EEEeCChHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADA-IIFCGAGTTAA 152 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~-vift~sGttaa 152 (625)
..++|+.+... +.++.+.+++.+.+.... . .|.......++.+.+.+++++.+|. +++ + |++| +|++++
T Consensus 27 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~----~-~y~~~~g~~~l~~~la~~~~~~~g~~~~~~-~~v~~~-~g~~~a 99 (389)
T 1gd9_A 27 DVISLGIGEPDFDTPQHIKEYAKEALDKGL----T-HYGPNIGLLELREAIAEKLKKQNGIEADPK-TEIMVL-LGANQA 99 (389)
T ss_dssp SCEECCCCSCSSCCCHHHHHHHHHHHHTTC----C-SCCCTTCCHHHHHHHHHHHHHHHCCCCCTT-TSEEEE-SSTTHH
T ss_pred CeEecCCCCCCCCCCHHHHHHHHHHHhCCC----C-CCCCCCCcHHHHHHHHHHHHHHhCCCCCCC-CeEEEc-CChHHH
Confidence 46777776654 357889999888774311 0 1111112345555566666666684 444 7 9998 677788
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhh
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKA 230 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~ 230 (625)
+..++.++ +++||+ |+++.+.|+++...++..|++++.++.++ ++.+|+++|+++++
T Consensus 100 ~~~~~~~~---------------~~~gd~--vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---- 158 (389)
T 1gd9_A 100 FLMGLSAF---------------LKDGEE--VLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVT---- 158 (389)
T ss_dssp HHHHHTTT---------------CCTTCE--EEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCC----
T ss_pred HHHHHHHh---------------CCCCCE--EEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcC----
Confidence 88887765 467875 99999999999888888999999999875 35789999999987
Q ss_pred CCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCC-CCCCcEEEEcCCCCCCC
Q 043646 231 AKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRN-IDGYDAIFLATHKFLGG 302 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~-~~~~D~v~~S~hK~lgg 302 (625)
+++++|++++++||||.+.| +++|+++|++||+++|+|++++.+.. ..++..+. ..+.|+++.|+||++|.
T Consensus 159 -~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 237 (389)
T 1gd9_A 159 -DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAM 237 (389)
T ss_dssp -TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTC
T ss_pred -cCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCC
Confidence 47899999999999999975 89999999999999999999886543 22233221 12568999999999974
Q ss_pred CC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHH
Q 043646 303 PG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEV 379 (625)
Q Consensus 303 p~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~ 379 (625)
|+ .+|++++++++. +.+.+.. ... ..+++..... .+++... ......+.
T Consensus 238 ~G~r~G~~~~~~~~~--~~l~~~~------------------------~~~-~~~~~~~~~~a~~~~l~~~-~~~~~~~~ 289 (389)
T 1gd9_A 238 TGWRLGFVAAPSWII--ERMVKFQ------------------------MYN-ATCPVTFIQYAAAKALKDE-RSWKAVEE 289 (389)
T ss_dssp GGGCCEEEECCHHHH--HHHHHHH------------------------TTT-TCSCCHHHHHHHHHHHTCH-HHHHHHHH
T ss_pred cccceEEEEECHHHH--HHHHHHH------------------------hhh-ccCCCHHHHHHHHHHHhCC-CcchHHHH
Confidence 43 379999987762 1111100 000 1122222221 1222211 01114567
Q ss_pred HHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCC
Q 043646 380 IKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGC 459 (625)
Q Consensus 380 i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~ 459 (625)
+.++.+.+++++.+.|.++ ++++..+. .+.+.+...+. .+.+..++.+.|.+++||.+++|.
T Consensus 290 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~----~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~gi~v~~g~ 351 (389)
T 1gd9_A 290 MRKEYDRRRKLVWKRLNEM-GLPTVKPK----GAFYIFPRIRD-------------TGLTSKKFSELMLKEARVAVVPGS 351 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCCCCCC----BTTEECCBCGG-------------GTCCHHHHHHHHHHHTCEECEEGG
T ss_pred HHHHHHHHHHHHHHHHHHc-CCeecCCC----eeeEEEEeccC-------------CCCCHHHHHHHHHHhCCEEEeCch
Confidence 7788888899999999877 77665542 34443333321 023467888888756899999887
Q ss_pred CCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 460 ACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 460 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.|+.. .++++||+++. ++++++.++++|++++++
T Consensus 352 ~~~~~---------------------------~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 352 AFGKA---------------------------GEGYVRISYAT--AYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp GGCGG---------------------------GTTBEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred hhCCC---------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 76411 14789999984 899999999999988765
No 69
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.95 E-value=2.1e-26 Score=243.73 Aligned_cols=354 Identities=12% Similarity=-0.035 Sum_probs=229.6
Q ss_pred CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccccc
Q 043646 86 SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVP 165 (625)
Q Consensus 86 ~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~ 165 (625)
.++.++.+.+++.+.+...+.+| .....++++.+++++|.+ ++++| +|+++++..++.+++.
T Consensus 8 ~~~~~~~v~~a~~~~~~~~~~~~-----------~~~~~~l~~~la~~~~~~---~v~~~-~ggt~al~~~~~~~~~--- 69 (375)
T 2fnu_A 8 EPCLDKEDKKAVLEVLNSKQLTQ-----------GKRSLLFEEALCEFLGVK---HALVF-NSATSALLTLYRNFSE--- 69 (375)
T ss_dssp CCCCCHHHHHHHHHHHTSSCCSS-----------SHHHHHHHHHHHHHHTCS---EEEEE-SCHHHHHHHHHHHSSC---
T ss_pred CCCCCHHHHHHHHHHHHcCcccC-----------ChHHHHHHHHHHHHhCCC---eEEEe-CCHHHHHHHHHHHhcc---
Confidence 36778899999998885432222 124678999999999986 68898 6777778888877620
Q ss_pred chhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCc
Q 043646 166 SIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNV 245 (625)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~ 245 (625)
.+++||+ |+++.++|+++...++..|++++.+++++++.+|+++|+++++ +++++|+++++
T Consensus 70 ---------~~~~gd~--Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~-----~~~~~v~~~~~--- 130 (375)
T 2fnu_A 70 ---------FSADRNE--IITTPISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLIN-----ERTKAIVSVDY--- 130 (375)
T ss_dssp ---------CCTTSCE--EEECSSSCTHHHHHHHHTTCEEEECCBCTTSSBCGGGSGGGCC-----TTEEEEEEECG---
T ss_pred ---------cCCCCCE--EEECCCccHhHHHHHHHCCCEEEEeccCCCCCCCHHHHHhhcC-----cCceEEEEeCC---
Confidence 0367875 9999999999999999999999999998877899999998886 57888888776
Q ss_pred cccccCHHHHHHHHHHcCCEEEEeccCcCCCcccc--CCCCCCCCCcEEEEcCCCCCCCCCCceEEEEe--ccccccCCC
Q 043646 246 TGIYSDTRSIARLLHQYGGFACFDFAASGPYVKIN--LRSRNIDGYDAIFLATHKFLGGPGTPGILLIS--KALYQLGSS 321 (625)
Q Consensus 246 TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id--~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~--~~~~~l~~~ 321 (625)
||.+.|+++|.++|++||+++|+|++|+.+..+.+ +..+ ..+++.++|+||+++ | |+|+++++ +++. +.+
T Consensus 131 tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~--~~i~~~s~s~~K~~~-~-g~g~~~~~~~~~~~--~~~ 204 (375)
T 2fnu_A 131 AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGF--ALASVFSFHAIKPIT-T-AEGGAVVTNDSELH--EKM 204 (375)
T ss_dssp GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSS--SSEEEEECCTTSSSC-C-SSCEEEEESCHHHH--HHH
T ss_pred cCCccCHHHHHHHHHHcCCEEEEECccccCCeECCeecccc--CCeEEEeCCCCCCcc-c-cCceEEEeCCHHHH--HHH
Confidence 99999999999999999999999999998765533 2221 123444556669995 6 68999885 3341 222
Q ss_pred CCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcE
Q 043646 322 PPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNI 401 (625)
Q Consensus 322 ~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv 401 (625)
.+...++.. .. .. ..+ ......+..+..++.. ++.+. ...+.+.+.++.+.+++++.+.|.++|++
T Consensus 205 ~~~~~~~~~-~~-~~-----~~~-~~~~~~~~~~~~~~~~----a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 270 (375)
T 2fnu_A 205 KLFRSHGML-KK-DF-----FEG-EVKSIGHNFRLNEIQS----ALGLS--QLKKAPFLMQKREEAALTYDRIFKDNPYF 270 (375)
T ss_dssp HHHTBTTEE-ES-SS-----SCE-EESSCCCBCCCCHHHH----HHHHH--HHTTHHHHHHHHHHHHHHHHHHHTTCSSE
T ss_pred HHHHhcCCc-cc-cc-----ccc-ccccccccCCCCHHHH----HHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 222222211 00 00 000 0000001112222222 22222 23467788889999999999999999999
Q ss_pred EEeCCCC-CCCcceE-EEEeccCCCCCCccccccCCCCC-ChHHHHHHhhhhcCeeeecCCCCCch---hhHhhhcCChh
Q 043646 402 QVLGNTS-VKRQAIL-SFLVYSTTNSSPENMKIERNKPL-HGPFVATLFNDLFGIQARGGCACAGP---YGHTLLAFDQT 475 (625)
Q Consensus 402 ~v~~~~~-~~~~~i~-~f~~~~~~~~~~~~~~~~~~~~l-~~~~v~~~L~~~~gI~v~~G~~~~~~---~~~~~l~~~~~ 475 (625)
++..+.+ ....+.+ .+.+ +.. ++ +..++.+.|. ++||.++.+|..... ++..+..-..+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~-~~~-------------~~~~~~~l~~~L~-~~gi~v~~~~~p~~~~~~~~~~~~~~~~~ 335 (375)
T 2fnu_A 271 TPLHPLLKDKSSNHLYPILM-HQK-------------FFTCKKLILESLH-KRGILAQVHYKPIYQYQLYQQLFNTAPLK 335 (375)
T ss_dssp EESGGGCSSCCCCSCEEEEE-CGG-------------GGGGHHHHHHHHH-HTTEECBCCCCCGGGSHHHHHHHCCCCCH
T ss_pred cccCCCCCCCcceEEEEEEe-Ccc-------------ccchHHHHHHHHH-HCCCCccccccccccchhhhcCCCccCCh
Confidence 9876521 1122222 2222 210 12 3567888885 479999854421100 00000000000
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 476 RSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 476 ~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
..... ..+++||+++.++|++|+++++++|++++.+
T Consensus 336 ~~~~~-----------~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~ 371 (375)
T 2fnu_A 336 SAEDF-----------YHAEISLPCHANLNLESVQNIAHSVLKTFES 371 (375)
T ss_dssp HHHHH-----------HHHEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----------HhCEEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 00000 1378999999999999999999999998765
No 70
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.95 E-value=1.2e-26 Score=248.06 Aligned_cols=339 Identities=13% Similarity=0.096 Sum_probs=235.1
Q ss_pred ceEeccCCCC-Cc-chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 77 RLTYADHTAS-GR-SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 77 ~~~Yld~~~~-~~-~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
..+.|..+.. +. +++.+.+++.+.+... .+.. ..+....+..+..+++++++++++|.+ ++++| +|+++++.
T Consensus 44 ~~idl~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~-~~~~~~~g~~~~~~~l~~~la~~~g~~---~v~~~-~ggt~a~~ 117 (398)
T 3a2b_A 44 RVLMFGSNSYLGLTTDTRIIKAAQDALEKY-GTGC-AGSRFLNGTLDIHVELEEKLSAYVGKE---AAILF-STGFQSNL 117 (398)
T ss_dssp EEEECSCSCTTCGGGCHHHHHHHHHHHHHH-CSCC-CSBTTTTCCCHHHHHHHHHHHHHHTCS---EEEEE-SSHHHHHH
T ss_pred eEEEeecccccCCCCCHHHHHHHHHHHHHc-CCCC-CCcCcccCCcHHHHHHHHHHHHHhCCC---cEEEE-CCHHHHHH
Confidence 3444444433 32 6788999988877432 1111 111112223467888999999999973 78998 56667788
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
.++.++ +++||. |+++.++|+++...++..|++++.++. +|+++|++++++... +++
T Consensus 118 ~~~~~~---------------~~~gd~--V~~~~p~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~~~~-~~~ 174 (398)
T 3a2b_A 118 GPLSCL---------------MGRNDY--ILLDERDHASIIDGSRLSFSKVIKYGH-----NNMEDLRAKLSRLPE-DSA 174 (398)
T ss_dssp HHHHHS---------------SCTTCE--EEEETTCCHHHHHHHHHSSSEEEEECT-----TCHHHHHHHHHTSCS-SSC
T ss_pred HHHHHH---------------hCCCCE--EEECCccCHHHHHHHHHcCCceEEeCC-----CCHHHHHHHHHhhcc-CCc
Confidence 887776 468885 999999999999899999999999986 589999999984100 178
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCc---cccCCC-CCC-CCCcEEEEcCCCCCCCCCCceEE
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV---KINLRS-RNI-DGYDAIFLATHKFLGGPGTPGIL 309 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~---~id~~~-~~~-~~~D~v~~S~hK~lggp~g~G~l 309 (625)
++|++++++||||.+.|+++|.++|++||+++|+|++++.+.. ...+.. .+. +++|+++.|+||+++ |.| |++
T Consensus 175 ~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~G-G~~ 252 (398)
T 3a2b_A 175 KLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLA-SLG-GFV 252 (398)
T ss_dssp EEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC-SSC-EEE
T ss_pred eEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEeccccccc-CCC-cEE
Confidence 9999999999999999999999999999999999999986642 122211 111 146999999999998 666 999
Q ss_pred EEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH--HHHHHHHHHHhhcCHHHHHHHHHHH
Q 043646 310 LISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM--IRAALAFWVKEYIGYEVIKKQEDVY 387 (625)
Q Consensus 310 ~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~--~~aal~~~~~~~~g~~~i~~~~~~l 387 (625)
++++++.. .+.+.. ......++++..+. +.++++.. +. .+.+.++.+++
T Consensus 253 ~~~~~~~~--~l~~~~-----------------------~~~~~~~~~~~~~~a~~~~~l~~~--~~--~~~~~~~~~~~ 303 (398)
T 3a2b_A 253 AGDADVID--FLKHNA-----------------------RSVMFSASMTPASVASTLKALEII--QN--EPEHIEKLWKN 303 (398)
T ss_dssp EECHHHHH--HHHHHC-----------------------HHHHSSBCCCHHHHHHHHHHHHHH--HH--CTHHHHHHHHH
T ss_pred EeCHHHHH--HHHHhc-----------------------ccceecCCCCHHHHHHHHHHHHHH--hh--CHHHHHHHHHH
Confidence 99887622 111000 00111233444443 22344432 11 34667778888
Q ss_pred HHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhH
Q 043646 388 IESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGH 467 (625)
Q Consensus 388 ~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~ 467 (625)
++++.+.|.++ +++++.+ .+.++.+.+ +. +.+..++.+.|.++ ||.+++|..|..+.
T Consensus 304 ~~~l~~~L~~~-g~~~~~~----~g~~~~~~~-~~--------------~~~~~~l~~~l~~~-gi~v~~~~~~~~~~-- 360 (398)
T 3a2b_A 304 TDYAKAQLLDH-GFDLGAT----ESPILPIFI-RS--------------NEKTFWVTKMLQDD-GVFVNPVVSPAVPA-- 360 (398)
T ss_dssp HHHHHHHHHHT-TCCBCSC----CSSEEEEEC-CC--------------HHHHHHHHHHHHHT-TEECEEECTTTSCG--
T ss_pred HHHHHHHHHhc-CCCcCCC----CCCEEEEEc-CC--------------HHHHHHHHHHHHHC-CcEEEeeCCCCCCC--
Confidence 89999999877 7766543 234444443 21 11255788888764 99999988775321
Q ss_pred hhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 468 TLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 468 ~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.++++||+++.+++++|+++++++|++++.+
T Consensus 361 ------------------------~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 391 (398)
T 3a2b_A 361 ------------------------EESLIRFSLMATHTYDQIDEAIEKMVKVFKQ 391 (398)
T ss_dssp ------------------------GGCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------CCceEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 1388999999999999999999999998765
No 71
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.95 E-value=8.7e-26 Score=242.92 Aligned_cols=347 Identities=12% Similarity=-0.031 Sum_probs=233.9
Q ss_pred CceEeccCCC-----CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC------------CCC
Q 043646 76 RRLTYADHTA-----SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG------------GGQ 138 (625)
Q Consensus 76 ~~~~Yld~~~-----~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g------------~~~ 138 (625)
+..++|+.+. ..++++.+.+++.+.+.... ...|... ....++++.++++++ +++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~----~~~y~~~----~~~~~lr~~la~~~~~~~~~~~~~~~~~~~ 104 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQE----CNGYFPT----VGSPEAREAVATWWRNSFVHKEELKSTIVK 104 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTC----SSSCCCT----TCCHHHHHHHHHHHHHHHCCSTTTGGGCCG
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCc----cCCcCCC----CCCHHHHHHHHHHHHhhhcccccCCCCCCc
Confidence 4578888775 45678899999988774310 0011111 113446666666666 445
Q ss_pred CCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC--CCC
Q 043646 139 ADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN--GLL 216 (625)
Q Consensus 139 ~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--~~l 216 (625)
+ +|++| +|+++++..++.++ +++||+ |+++.++|+++...++..|++++.++++++ +.+
T Consensus 105 ~-~v~~~-~g~~~al~~~~~~l---------------~~~gd~--vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 165 (416)
T 1bw0_A 105 D-NVVLC-SGGSHGILMAITAI---------------CDAGDY--ALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEA 165 (416)
T ss_dssp G-GEEEE-SHHHHHHHHHHHHH---------------CCTTCE--EEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEE
T ss_pred c-eEEEe-CChHHHHHHHHHHh---------------CCCCCE--EEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCC
Confidence 5 89998 78999999988877 467885 888899999998888889999999998653 568
Q ss_pred CHHHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCC--------ccccCCCCC
Q 043646 217 DIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY--------VKINLRSRN 285 (625)
Q Consensus 217 d~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~--------~~id~~~~~ 285 (625)
|+++|+++++ ++++++++++++||||.+.| +++|+++|++||+++|+|++++... ...++..+.
T Consensus 166 d~~~l~~~l~-----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 240 (416)
T 1bw0_A 166 DLDEIRRLKD-----DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFE 240 (416)
T ss_dssp CHHHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSC
T ss_pred CHHHHHHHhc-----cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHcc
Confidence 9999999887 57899999999999999998 8999999999999999999987522 112232221
Q ss_pred CCCCcEEEEcCCCCCCCCC-CceEEEEecc--ccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH
Q 043646 286 IDGYDAIFLATHKFLGGPG-TPGILLISKA--LYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM 362 (625)
Q Consensus 286 ~~~~D~v~~S~hK~lggp~-g~G~l~v~~~--~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 362 (625)
....++++.|++|+|+.|+ .+|++++++. +. +.+.. ... ......++++....
T Consensus 241 ~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~--~~~~~--------------------~~~--~~~~~~~~~~~~~~ 296 (416)
T 1bw0_A 241 TTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNG--PSFLE--------------------GLK--RVGMLVCGPCTVVQ 296 (416)
T ss_dssp CSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSC--HHHHH--------------------HHH--HHHHHHTCSCHHHH
T ss_pred CCCcEEEEecchhhCCCCCceEEEEEeeCchhhH--HHHHH--------------------HHH--HHhccccCCCcHHH
Confidence 1123567789999987664 4799999874 31 10000 000 00001223333332
Q ss_pred HHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChH
Q 043646 363 IRAALAFWVK-EYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGP 441 (625)
Q Consensus 363 ~~aal~~~~~-~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~ 441 (625)
.. +.+.+.. ...+.+.+.++.+.+++++.+.|.++|+++++.+. .+.+.+...+... -....+..
T Consensus 297 ~a-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~~~~~~~~~~~~~---------~~~~~~~~ 362 (416)
T 1bw0_A 297 AA-LGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPR----GAMYLMSRIDLEK---------YRDIKTDV 362 (416)
T ss_dssp HH-HHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCC----BTTEEEEEECGGG---------BSSCCSHH
T ss_pred HH-HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCC----eeEEEEEeCCHHH---------cCCCCCHH
Confidence 21 1122210 12345677788888999999999998899887553 2333333222100 00012456
Q ss_pred HHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 442 FVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 442 ~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
++.+.|.+++||.+++|..|. .++++||+++ +++++++.+++.|+++++
T Consensus 363 ~~~~~l~~~~gi~v~~g~~f~-----------------------------~~~~iRis~~--~~~e~l~~~l~~l~~~l~ 411 (416)
T 1bw0_A 363 EFFEKLLEEENVQVLPGTIFH-----------------------------APGFTRLTTT--RPVEVYREAVERIKAFCQ 411 (416)
T ss_dssp HHHHHHHHHHCEECEEGGGGT-----------------------------CTTEEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEecccccC-----------------------------CCCeEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 788877656899999887654 1489999996 689999999999998876
Q ss_pred hh
Q 043646 522 YG 523 (625)
Q Consensus 522 ~~ 523 (625)
+.
T Consensus 412 ~~ 413 (416)
T 1bw0_A 412 RH 413 (416)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 72
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.95 E-value=5.5e-26 Score=245.74 Aligned_cols=349 Identities=9% Similarity=-0.067 Sum_probs=238.9
Q ss_pred CceEeccCCCC-----CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC-----CCCCCcEEEe
Q 043646 76 RRLTYADHTAS-----GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG-----GGQADAIIFC 145 (625)
Q Consensus 76 ~~~~Yld~~~~-----~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g-----~~~~~~vift 145 (625)
+.+++|+.+.. .++++.|.+++.+.+.....+ .|.. .....++++.++++++ ++++ +|++|
T Consensus 54 ~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~----~y~~----~~g~~~lr~~la~~~~~~~~~~~~~-~v~~t 124 (427)
T 3dyd_A 54 KTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYN----GYAP----SIGFLSSREEIASYYHCPEAPLEAK-DVILT 124 (427)
T ss_dssp SCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSS----SCCC----TTCCHHHHHHHHHHHCBTTBCCCGG-GEEEE
T ss_pred CCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCC----CCCC----CCCcHHHHHHHHHHHhhcCCCCChH-HEEEe
Confidence 45788887764 367889999998877431111 1111 1124568889999988 5555 89998
Q ss_pred CChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHH
Q 043646 146 GAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRS 223 (625)
Q Consensus 146 ~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~ 223 (625)
+|+++++..++.++ .++||+ |+++.+.|+.+...++..|++++.++.++ ++.+|+++|++
T Consensus 125 -~g~t~al~~~~~~l---------------~~~gd~--vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~ 186 (427)
T 3dyd_A 125 -SGCSQAIDLCLAVL---------------ANPGQN--ILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEY 186 (427)
T ss_dssp -SSHHHHHHHHHHHH---------------CCTTCE--EEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHS
T ss_pred -cCcHHHHHHHHHHh---------------cCCCCE--EEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHH
Confidence 78888899888877 467885 88999999998888889999999999864 45789999999
Q ss_pred HHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCCCCCCcEEEEcC
Q 043646 224 QLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VKINLRSRNIDGYDAIFLAT 296 (625)
Q Consensus 224 ~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~~~~~D~v~~S~ 296 (625)
+++ +++++|++++++||||.+.| +++|+++|+++|+++++|++++... ....+..+..+...+++.|+
T Consensus 187 ~l~-----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~ 261 (427)
T 3dyd_A 187 LID-----EKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGL 261 (427)
T ss_dssp SCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEES
T ss_pred Hhc-----cCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeec
Confidence 887 47899999999999999999 9999999999999999999987522 22233333221223567799
Q ss_pred CCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHh
Q 043646 297 HKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKE 373 (625)
Q Consensus 297 hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~ 373 (625)
+|.|+.|+ .+|++++++... ...+.. ...+..... . ..+++..+.. .+++... .
T Consensus 262 sK~~~~~G~riG~~~~~~~~~---~~~~~i----------------~~~l~~~~~-~-~~~~~~~~~~a~~~~L~~~--~ 318 (427)
T 3dyd_A 262 AKRWLVPGWRLGWILIHDRRD---IFGNEI----------------RDGLVKLSQ-R-ILGPCTIVQGALKSILCRT--P 318 (427)
T ss_dssp TTTSSCGGGCCEEEEEECSTT---SSHHHH----------------HHHHHHHHH-H-HCCSCHHHHHHHHHHHHHS--C
T ss_pred cccCCCcCcceEEEEecCcch---hhHHHH----------------HHHHHHHHh-c-cCCCCHHHHHHHHHHHHhc--C
Confidence 99987554 379999886420 000000 000000011 1 1233333322 1222210 1
Q ss_pred hcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCe
Q 043646 374 YIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGI 453 (625)
Q Consensus 374 ~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI 453 (625)
....+.+.++.+.+++++.+.|+++|+++++.+. .+.+.+...+... -....+..++++.|.+++||
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~----~g~~~~~~l~~~~---------~~~~~~~~~~~~~l~~~~gV 385 (427)
T 3dyd_A 319 GEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPS----GAMYLMVGIEMEH---------FPEFENDVEFTERLVAEQSV 385 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCS----BTTEEEEEECGGG---------CTTCSSHHHHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCC----eeEEEEEecCHhh---------cCCCCCHHHHHHHHHHHCCE
Confidence 2335677788888899999999988999887663 3445544332100 00123456788888667899
Q ss_pred eeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 454 QARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 454 ~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.+++|..|. .++++||+++ ++++++++++++|++++.+.
T Consensus 386 ~v~~g~~~~-----------------------------~~~~iRis~~--~~~e~i~~~l~~l~~~l~~~ 424 (427)
T 3dyd_A 386 HCLPATCFE-----------------------------YPNFIRVVIT--VPEVMMLEACSRIQEFCEQH 424 (427)
T ss_dssp ECEEGGGGT-----------------------------CTTEEEEESC--SCHHHHHHHHHHHHHHHHHH
T ss_pred EEECCcccC-----------------------------CCCeEEEEEC--CCHHHHHHHHHHHHHHHHHh
Confidence 999887664 2489999987 68999999999999988764
No 73
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.95 E-value=3.4e-26 Score=244.61 Aligned_cols=344 Identities=11% Similarity=-0.003 Sum_probs=234.2
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG--GGQADAIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g--~~~~~~vift~sGttaal 153 (625)
.+++|..+... ++++.+.+++.+.+... .. .|..+ ..++.+.+.+++++.+| .+++ +|++| +|+++++
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~-~y~~~--~~~l~~~la~~l~~~~g~~~~~~-~v~~t-~g~~~a~ 102 (399)
T 1c7n_A 32 EVVPLSVADMEFKNPPELIEGLKKYLDET----VL-GYTGP--TEEYKKTVKKWMKDRHQWDIQTD-WIINT-AGVVPAV 102 (399)
T ss_dssp TCCCCCSSSCSSCCCHHHHHHHHHHHHHC----CC-SSBCC--CHHHHHHHHHHHHHHHCCCCCGG-GEEEE-SSHHHHH
T ss_pred CceeeeecCCCCCCCHHHHHHHHHHHhcC----CC-CCCCC--cHHHHHHHHHHHHHHhCCCCChh-hEEEc-CCHHHHH
Confidence 45566555543 45678999988877321 00 11111 34555666666666678 4444 89998 7888889
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecC-CCC--CCCHHHHHHHHHHhhh
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLD-DNG--LLDIEALRSQLELYKA 230 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~-~~~--~ld~~~L~~~l~~~~~ 230 (625)
..++.++ +++||+ |++..+.|+++...++..|++++.+|.+ .++ .+|+++|++++++
T Consensus 103 ~~~~~~l---------------~~~gd~--vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~--- 162 (399)
T 1c7n_A 103 FNAVREF---------------TKPGDG--VIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD--- 162 (399)
T ss_dssp HHHHHHH---------------CCTTCE--EEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC---
T ss_pred HHHHHHh---------------cCCCCE--EEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhcc---
Confidence 9888877 467875 9999999999988888889999999886 333 5899999999973
Q ss_pred CCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCCC--CCCcEEEEcCCCCCC
Q 043646 231 AKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRNI--DGYDAIFLATHKFLG 301 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~~--~~~D~v~~S~hK~lg 301 (625)
+++++|++++++||||.+.| +++|+++|++||+++|+|++++.... ..++..+.. .+.++++.|++|++|
T Consensus 163 -~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 241 (399)
T 1c7n_A 163 -KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFN 241 (399)
T ss_dssp -TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHT
T ss_pred -CCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhcc
Confidence 47899999999999999998 89999999999999999999886321 223332211 144688899999997
Q ss_pred CCC-CceEEEEec-cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHH
Q 043646 302 GPG-TPGILLISK-ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEV 379 (625)
Q Consensus 302 gp~-g~G~l~v~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~ 379 (625)
.|+ .+|++++++ ++. +.+.+. ...+..++++......+ .+.+.......+.
T Consensus 242 ~~G~r~G~~~~~~~~~~--~~l~~~------------------------~~~~~~~~~~~~~~~a~-~~~l~~~~~~~~~ 294 (399)
T 1c7n_A 242 IAGMGMSNIIIKNPDIR--ERFTKS------------------------RDATSGMPFTTLGYKAC-EICYKECGKWLDG 294 (399)
T ss_dssp CGGGCCEEEECCCHHHH--HHHHHH------------------------HHHTTCCCCCHHHHHHH-HHHHHHCHHHHHH
T ss_pred ccchheEEEEECCHHHH--HHHHHH------------------------HhhcccCCCCHHHHHHH-HHHHhCChHHHHH
Confidence 443 379999874 452 111100 11112233344333222 1121111223566
Q ss_pred HHHHHHHHHHHHHHhhCC-CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecC
Q 043646 380 IKKQEDVYIESALGRILP-NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGG 458 (625)
Q Consensus 380 i~~~~~~l~~~l~~~L~~-l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G 458 (625)
+.++.+.+++++.+.|.+ +|+++++.+ .++.+.+...+.. +++..++.+.|.+++||.+++|
T Consensus 295 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~gi~v~~g 357 (399)
T 1c7n_A 295 CIKVIDKNQRIVKDFFEVNHPEIKAPLI----EGTYLQWIDFRAL-------------KMDHKAMEEFMIHKAQIFFDEG 357 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSBCCCC----SBSSEEEEECGGG-------------CCCHHHHHHHHHHTTCCCCEEG
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCeEecC----CceEEEEEEcccC-------------CCCHHHHHHHHHHhCCEEEeCc
Confidence 777888889999999987 788876654 3455554433320 1346678888865689999988
Q ss_pred CCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 459 CACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 459 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
..|... .++++||+++.. +++++.+++.|++++.+.
T Consensus 358 ~~~~~~---------------------------~~~~iRis~~~~--~~~l~~~l~~l~~~l~~~ 393 (399)
T 1c7n_A 358 YIFGDG---------------------------GIGFERINLAAP--SSVIQESLERLNKALKDL 393 (399)
T ss_dssp GGGCGG---------------------------GTTEEEEECCSC--HHHHHHHHHHHHHHHHHH
T ss_pred cccCCC---------------------------CCCeEEEEeccC--HHHHHHHHHHHHHHHHHH
Confidence 776411 248999999854 799999999999887654
No 74
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.95 E-value=2.7e-26 Score=244.62 Aligned_cols=338 Identities=14% Similarity=0.037 Sum_probs=227.4
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaal 153 (625)
..+.|+.+... +.|+.+.+++.+.+.... . .|....+..++.+++.+++.+.+|. +++ +|++| +|+++++
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~----~-~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t-~g~~~al 104 (385)
T 1b5p_A 32 DLVALTAGEPDFDTPEHVKEAARRALAQGK----T-KYAPPAGIPELREALAEKFRRENGLSVTPE-ETIVT-VGGSQAL 104 (385)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHHTTC----C-SCCCTTCCHHHHHHHHHHHHHTTCCCCCGG-GEEEE-SHHHHHH
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHhcCC----C-CCCCCCCCHHHHHHHHHHHHHHhCCCCChH-HEEEc-CChHHHH
Confidence 45666655443 346788888877763211 0 1111122345555666666655565 344 89998 8999999
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhhC
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKAA 231 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~~ 231 (625)
..++.++ +++||+ |+++.++|+.+...++..|++++.+++++ ++.+|+++|+++++
T Consensus 105 ~~~~~~l---------------~~~gd~--Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----- 162 (385)
T 1b5p_A 105 FNLFQAI---------------LDPGDE--VIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAIT----- 162 (385)
T ss_dssp HHHHHHH---------------CCTTCE--EEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCC-----
T ss_pred HHHHHHh---------------cCCCCE--EEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcC-----
Confidence 9998887 578885 88999999999888888999999999975 45789999999887
Q ss_pred CCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc---cccCCCCCCCCCcEEEEcCCCCCCCCC-
Q 043646 232 KRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---KINLRSRNIDGYDAIFLATHKFLGGPG- 304 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~---~id~~~~~~~~~D~v~~S~hK~lggp~- 304 (625)
+++++|++++++||||.+.+ +++|+++|++||+++|+|++++.... ..++..+.. +.++++.|++|++|.|+
T Consensus 163 ~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~i~~~s~SK~~~~~G~ 241 (385)
T 1b5p_A 163 PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAP-EHTLTVNGAAKAFAMTGW 241 (385)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCT-TTEEEEEESTTTTTCGGG
T ss_pred CCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCC-CCEEEEEechhhcCCccc
Confidence 57899999999999999977 88999999999999999999875432 122332211 45788899999998543
Q ss_pred CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH-HHHHHHHHHhhcCHHHHHHH
Q 043646 305 TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI-RAALAFWVKEYIGYEVIKKQ 383 (625)
Q Consensus 305 g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~-~aal~~~~~~~~g~~~i~~~ 383 (625)
.+|++++++++. +.+.+. ......+.+.+.+.+ .+++..........+.+.++
T Consensus 242 RiG~~~~~~~~~--~~l~~~------------------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 295 (385)
T 1b5p_A 242 RIGYACGPKEVI--KAMASV------------------------SRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREA 295 (385)
T ss_dssp CCEEEECCHHHH--HHHHHH------------------------HHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ceEEEEeCHHHH--HHHHHH------------------------HhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 289999987762 111100 000111222333221 12221100011124566777
Q ss_pred HHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc
Q 043646 384 EDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG 463 (625)
Q Consensus 384 ~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~ 463 (625)
.++.++++.+.|.++ ++++..+. .+.+.+...+. .+++..++.+.|. ++||.+++|..|+
T Consensus 296 ~~~~~~~l~~~L~~~-g~~~~~~~----~~~~~~~~~~~-------------~~~~~~~l~~~l~-~~gv~v~~g~~f~- 355 (385)
T 1b5p_A 296 YRRRRDLLLEGLTAL-GLKAVRPS----GAFYVLMDTSP-------------IAPDEVRAAERLL-EAGVAVVPGTDFA- 355 (385)
T ss_dssp HHHHHHHHHHHHHHH-TCCBCCCS----BTTEEEEECTT-------------TCSSHHHHHHHHH-HTTEECEESGGGT-
T ss_pred HHHHHHHHHHHHHHC-CCeecCCC----eeEEEEEecCC-------------CCCCHHHHHHHHH-HCCeEEecccccC-
Confidence 777888888888876 77665542 34444433321 1235678888886 6899999987764
Q ss_pred hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 464 PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.++++|||++ +++++++.+++.|++++
T Consensus 356 ----------------------------~~~~iRis~~--~~~~~i~~~l~~l~~~l 382 (385)
T 1b5p_A 356 ----------------------------AFGHVRLSYA--TSEENLRKALERFARVL 382 (385)
T ss_dssp ----------------------------CTTEEEEECC--SCHHHHHHHHHHGGGGC
T ss_pred ----------------------------CCCeEEEEec--CCHHHHHHHHHHHHHHH
Confidence 1378999997 78999999998887654
No 75
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.95 E-value=2e-26 Score=246.64 Aligned_cols=347 Identities=15% Similarity=0.114 Sum_probs=233.8
Q ss_pred eccCCCCCcchHHHHHHHHHhhCCCC--CCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 043646 80 YADHTASGRSLRYIEDYIINNVLPFY--GNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQ 157 (625)
Q Consensus 80 Yld~~~~~~~p~~v~ea~~~~l~~~~--~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (625)
++|+++.++.|+.|.+++.+.+...+ ++++...+.......++.+++++++++++|.+++ .+++++| ++++..++
T Consensus 26 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~--~i~~~sG-t~a~~~a~ 102 (405)
T 2vi8_A 26 IELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHA--NVQPHSG-AQANMAVY 102 (405)
T ss_dssp EECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE--ECCCSSH-HHHHHHHH
T ss_pred eeeccCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCce--EEEecCc-HHHHHHHH
Confidence 56666667779999999988774222 3333211111133456666789999999998743 4444478 77777777
Q ss_pred HHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH---HHcC--CeEEEEecC-CCCCCCHHHHHHHHHHhhhC
Q 043646 158 EVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW---RQSL--AEVVEIGLD-DNGLLDIEALRSQLELYKAA 231 (625)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~---~~~G--~~vv~v~~~-~~~~ld~~~L~~~l~~~~~~ 231 (625)
.++ +++||+ |+++.++|+++...+ ...| .+++.++++ .++.+|+++|++++++
T Consensus 103 ~~~---------------~~~gd~--Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~---- 161 (405)
T 2vi8_A 103 FTV---------------LEHGDT--VLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARL---- 161 (405)
T ss_dssp HHH---------------CCTTCE--EEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH----
T ss_pred HHh---------------cCCCCE--EEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHh----
Confidence 766 467885 888888998875311 2334 478888876 4678999999999984
Q ss_pred CCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEE
Q 043646 232 KRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLI 311 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v 311 (625)
.++++|+++ ++| .|...|+++|.++|++||+++|+|++++.+..+.+........+|++++|+||+|++|.| |++++
T Consensus 162 ~~~~~v~~~-~~~-~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~ 238 (405)
T 2vi8_A 162 HRPKLIVAA-AAA-YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG-GMILC 238 (405)
T ss_dssp HCCSEEEEC-CSS-CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC-EEEEE
T ss_pred cCCeEEEEe-CCC-CCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCC-eEEEE
Confidence 267888774 333 467779999999999999999999999865443333322223579999999999988888 99999
Q ss_pred eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHH
Q 043646 312 SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIE 389 (625)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~ 389 (625)
++++.. .+.+. ...+..++++..+.. .+++... +..+.+.+.++.+.+++
T Consensus 239 ~~~~~~--~l~~~------------------------~~~~~~~~~~~~~~aa~~~al~~~--~~~~~~~~~~~~~~~~~ 290 (405)
T 2vi8_A 239 QEQFAK--QIDKA------------------------IFPGIQGGPLMHVIAAKAVAFGEA--LQDDFKAYAKRVVDNAK 290 (405)
T ss_dssp CHHHHH--HHHHH------------------------HTTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHH
T ss_pred cHHHHH--HHHhh------------------------hcccccCCCCHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHH
Confidence 877621 11110 011223555554443 2344443 23456788889999999
Q ss_pred HHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhh
Q 043646 390 SALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTL 469 (625)
Q Consensus 390 ~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~ 469 (625)
++.+.|.++ +++++.+. ....++.+.+... +++..++.+.|. ++||.+++|..|....+.
T Consensus 291 ~l~~~L~~~-g~~~~~~~--~~~~~~~~~~~~~--------------~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~~-- 350 (405)
T 2vi8_A 291 RLASALQNE-GFTLVSGG--TDNHLLLVDLRPQ--------------QLTGKTAEKVLD-EVGITVNKNTIPYDPESP-- 350 (405)
T ss_dssp HHHHHHHHT-TCEEGGGS--CSSSEEEEECGGG--------------TCCHHHHHHHHH-HHTEECEEECCTTCSSCT--
T ss_pred HHHHHHHhC-CCeEecCC--CCceEEEEEccCC--------------CCCHHHHHHHHH-HcCceeccCcCccccCCC--
Confidence 999999887 88887652 1234444443211 234667888884 579999988643100000
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCCcEEEEecCC----CCCHHHHHHHHHHHHHHHHh
Q 043646 470 LAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPY----YMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 470 l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~----~~t~edid~ll~aL~~~~~~ 522 (625)
..++++||+++. .++++|+++++++|++++.+
T Consensus 351 ---------------------~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 386 (405)
T 2vi8_A 351 ---------------------FVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKN 386 (405)
T ss_dssp ---------------------TTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred ---------------------CCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhc
Confidence 024789999986 56899999999999988754
No 76
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.95 E-value=4.3e-26 Score=245.99 Aligned_cols=331 Identities=16% Similarity=0.137 Sum_probs=232.8
Q ss_pred CcchHHHHHHHHHhhCC-CCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHHHHHHHHhccc
Q 043646 87 GRSLRYIEDYIINNVLP-FYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG--GGQADAIIFCGAGTTAAIKRLQEVMGIT 163 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~-~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g--~~~~~~vift~sGttaal~~l~~~l~~~ 163 (625)
.+.++.|.+++.+.+.. .+..+ ....++.+++++++++.+| .+++ +|+|| +|+++++..++.++
T Consensus 73 ~~~~~~v~~a~~~~~~~~~~~y~--------~~~~~l~~~l~~~l~~~~g~~~~~~-~v~~~-~g~~ea~~~a~~~~--- 139 (421)
T 3l8a_A 73 FLPVPEIKEAIINYGREHIFGYN--------YFNDDLYQAVIDWERKEHDYAVVKE-DILFI-DGVVPAISIALQAF--- 139 (421)
T ss_dssp SCCCHHHHHHHHHHHHHCCSSCB--------CCCHHHHHHHHHHHHHHHCCCCCGG-GEEEE-SCHHHHHHHHHHHH---
T ss_pred CCCCHHHHHHHHHHHhcCCcCCC--------CCCHHHHHHHHHHHHHHhCCCCCHH-HEEEc-CCHHHHHHHHHHHh---
Confidence 34678999999887743 11111 1125678889999999999 4444 89998 78888888888876
Q ss_pred ccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecC-CCC--CCCHHHHHHHHHHhhhCCCCeEEEEe
Q 043646 164 VPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLD-DNG--LLDIEALRSQLELYKAAKRPMLGSFS 240 (625)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~-~~~--~ld~~~L~~~l~~~~~~~~~~lv~~~ 240 (625)
.++||+ |++..+.|+++...++..|.+++.+|++ .++ .+|+++|++++++ +++++|+++
T Consensus 140 ------------~~~gd~--Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~----~~~~~vil~ 201 (421)
T 3l8a_A 140 ------------SEKGDA--VLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIID----NNVKIYLLC 201 (421)
T ss_dssp ------------SCTEEE--EEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHH----TTEEEEEEE
T ss_pred ------------cCCCCE--EEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhc----cCCeEEEEC
Confidence 467775 8888999999988888899999999986 333 6899999999984 479999999
Q ss_pred cccCccccc---cCHHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCCC--CCCcEEEEcCCCCCCCCC-CceEEE
Q 043646 241 ACSNVTGIY---SDTRSIARLLHQYGGFACFDFAASGPY----VKINLRSRNI--DGYDAIFLATHKFLGGPG-TPGILL 310 (625)
Q Consensus 241 ~~~n~TG~~---~~l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~~--~~~D~v~~S~hK~lggp~-g~G~l~ 310 (625)
+++||||.+ .++++|+++|++||+++|+|++|+... ....+..+.. .+.++++.|++|++|.++ .+|+++
T Consensus 202 ~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~ 281 (421)
T 3l8a_A 202 SPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAI 281 (421)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEE
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEE
Confidence 999999998 568999999999999999999987532 1222222211 144588899999997343 479999
Q ss_pred Ee-ccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 043646 311 IS-KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIE 389 (625)
Q Consensus 311 v~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~ 389 (625)
++ +++.. .+.+ .......++++..+...+...+. ......+.+.++.+.+++
T Consensus 282 ~~~~~l~~--~~~~------------------------~~~~~~~~~~n~~~~~a~~aal~-~~~~~~~~~~~~~~~~~~ 334 (421)
T 3l8a_A 282 IQNESLRR--KFQY------------------------RQLANNQHEVPTVGMIATQAAFQ-YGKPWLEELKTVIEGNIK 334 (421)
T ss_dssp CCSHHHHH--HHHH------------------------HHHHTTCSCCCHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHH--HHHH------------------------HHHhcccCCCCHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHH
Confidence 88 55521 1100 01112233445444332222221 112235677788888899
Q ss_pred HHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhh
Q 043646 390 SALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTL 469 (625)
Q Consensus 390 ~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~ 469 (625)
++.+.|+++|+++++.+. +..+.+...+.. +++..++.+.|.+++||.+++|..|+..
T Consensus 335 ~l~~~L~~~~~i~~~~~~----~~~~~~v~~~~~-------------~~~~~~l~~~l~~~~gi~v~~g~~f~~~----- 392 (421)
T 3l8a_A 335 LVIKELEAKTKIKVMEPE----GTYLVWLDFSAY-------------AIAQPQLSEKLQNEAKVVLNDGAHFGKE----- 392 (421)
T ss_dssp HHHHHHHHHCSCEEECCS----BSSEEEEECGGG-------------TCCTTHHHHHHHHTTCEECEEGGGGCGG-----
T ss_pred HHHHHHHhCCCceEeCCC----eeEEEEEecccc-------------CCCHHHHHHHHHHhCCEEEECchhhCCC-----
Confidence 999999877889888663 344443333321 1335578888877789999998877521
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 470 LAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 470 l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.++++||+++ ++++++++++++|++++.
T Consensus 393 ----------------------~~~~iRi~~~--~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 393 ----------------------GKYFARLNVA--TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp ----------------------GTTEEEEECC--SCHHHHHHHHHHHHHHC-
T ss_pred ----------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 2489999998 589999999999998753
No 77
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.95 E-value=8.6e-26 Score=242.34 Aligned_cols=343 Identities=12% Similarity=-0.019 Sum_probs=234.8
Q ss_pred CceEeccCCCCC----cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChH
Q 043646 76 RRLTYADHTASG----RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGT 149 (625)
Q Consensus 76 ~~~~Yld~~~~~----~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGt 149 (625)
+..++|+.+... +.++.+.+++.+.+.... . .|.......++.+.+.+++.+.+|. +++ +|++| +|+
T Consensus 38 ~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~----~-~y~~~~g~~~l~~~la~~l~~~~g~~~~~~-~v~~t-~g~ 110 (406)
T 1xi9_A 38 IKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGH----N-YYGDSEGLPELRKAIVEREKRKNGVDITPD-DVRVT-AAV 110 (406)
T ss_dssp CCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTC----C-SCCCTTCCHHHHHHHHHHHHHHHCCCCCGG-GEEEE-SHH
T ss_pred CCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCC----C-CCCCCCCcHHHHHHHHHHHHHhcCCCCCHH-HEEEc-CCh
Confidence 356788877662 456889999888774321 0 1111112344555566666655554 344 89998 788
Q ss_pred HHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHH
Q 043646 150 TAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLEL 227 (625)
Q Consensus 150 taal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~ 227 (625)
++++..++.++ +++||+ |+++.++|+++...++..|++++.++.++ ++.+|+++|+++++
T Consensus 111 ~~al~~~~~~l---------------~~~gd~--Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~- 172 (406)
T 1xi9_A 111 TEALQLIFGAL---------------LDPGDE--ILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKIT- 172 (406)
T ss_dssp HHHHHHHHHHH---------------CCTTCE--EEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCC-
T ss_pred HHHHHHHHHHh---------------CCCCCE--EEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhC-
Confidence 88899888876 467885 99999999999888888999999999875 34689999999987
Q ss_pred hhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc---cccCCCCCCCCC-cEEEEcCCCCC
Q 043646 228 YKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---KINLRSRNIDGY-DAIFLATHKFL 300 (625)
Q Consensus 228 ~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~---~id~~~~~~~~~-D~v~~S~hK~l 300 (625)
+++++|++++++||||.+.| +++|+++|++||+++|+|++++.+.. ...+..+. .+. |+++.|+||++
T Consensus 173 ----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~ 247 (406)
T 1xi9_A 173 ----DRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLT-KDVPVIVMNGLSKVY 247 (406)
T ss_dssp ----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHC-SSSCEEEEEESTTTT
T ss_pred ----cCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcC-CCceEEEEecccccc
Confidence 47899999999999999976 89999999999999999999876432 11222211 245 78889999999
Q ss_pred CCCC-CceEEE--Eec----cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh
Q 043646 301 GGPG-TPGILL--ISK----ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE 373 (625)
Q Consensus 301 ggp~-g~G~l~--v~~----~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~ 373 (625)
+.|+ .+|+++ .++ ++.. .+.. ..... .+++..... ++.+++...
T Consensus 248 ~~~G~r~G~~~~~~~~~~~~~l~~--~l~~-------------------------~~~~~-~~~~~~~~~-a~~~~l~~~ 298 (406)
T 1xi9_A 248 FATGWRLGYMYFVDPENKLSEVRE--AIDR-------------------------LARIR-LCPNTPAQF-AAIAGLTGP 298 (406)
T ss_dssp CCGGGCCEEEEEECTTCTTHHHHH--HHHH-------------------------HHHHT-CCSCSHHHH-HHHHHHHSC
T ss_pred CCCccEEEEEEEecCchhHHHHHH--HHHH-------------------------HHHhh-cCCCHHHHH-HHHHHHhCC
Confidence 7333 279998 666 5421 1100 00111 222222211 112222111
Q ss_pred hcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCe
Q 043646 374 YIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGI 453 (625)
Q Consensus 374 ~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI 453 (625)
..+.+.+.++.+.+++++.+.|.++|++++..+. .+++.|...+.. .+.+..++.+.|.+++||
T Consensus 299 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~l~~~l~~~~gi 362 (406)
T 1xi9_A 299 MDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQ----GAFYIFPKIEVG------------PWKNDKEFVLDVLHNAHV 362 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCC----BSSEECCEECSC------------SCSSHHHHHHHHHHHHCE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCC----eeEEEEEecCcc------------CCCCHHHHHHHHHHhCCE
Confidence 1225677788888899999999988898876542 355555333310 012466788888656899
Q ss_pred eeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 454 QARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 454 ~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.+++|..|+.. .++++||+++ +++++++.++++|++++++
T Consensus 363 ~v~~g~~f~~~---------------------------~~~~lRis~~--~~~~~i~~~~~~l~~~l~~ 402 (406)
T 1xi9_A 363 LFVHGSGFGEY---------------------------GAGHFRAVFL--PPIEILEEAMDRFEKFMKE 402 (406)
T ss_dssp ECEEGGGGCGG---------------------------GTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred EEeCchhcCCC---------------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 99988766410 1488999998 8999999999999988765
No 78
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.95 E-value=1.3e-25 Score=236.51 Aligned_cols=325 Identities=14% Similarity=0.040 Sum_probs=227.6
Q ss_pred CceEeccCCCC-CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 76 RRLTYADHTAS-GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 76 ~~~~Yld~~~~-~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
+.++.|+.+.. .++|+.+.+++.+.+......|.. ...+++++++++++++++ +|++| +|+++++.
T Consensus 26 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~-----------~~~~l~~~la~~~~~~~~-~i~~~-~g~t~al~ 92 (361)
T 3ftb_A 26 RELLDYSSNINPLGIPKSFLNNIDEGIKNLGVYPDV-----------NYRRLNKSIENYLKLKDI-GIVLG-NGASEIIE 92 (361)
T ss_dssp --CEETTCCCCTTCSCHHHHTTHHHHHHGGGSCCCT-----------TCHHHHHHHHHHHTCCSC-EEEEE-SSHHHHHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCc-----------cHHHHHHHHHHHhCCCcc-eEEEc-CCHHHHHH
Confidence 45677776633 346788999988877543333321 135789999999998776 89998 78888888
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
.++.+ + | .|+++.+.|+++...++..|++++.++++.++.+++++|+++++ + +
T Consensus 93 ~~~~~----------------~---d--~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~-----~-~ 145 (361)
T 3ftb_A 93 LSISL----------------F---E--KILIIVPSYAEYEINAKKHGVSVVFSYLDENMCIDYEDIISKID-----D-V 145 (361)
T ss_dssp HHHTT----------------C---S--EEEEEESCCTHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHTT-----T-C
T ss_pred HHHHH----------------c---C--cEEEecCChHHHHHHHHHcCCeEEEeecCcccCCCHHHHHHhcc-----C-C
Confidence 87543 3 4 38888999999988899999999999999887889999999887 5 8
Q ss_pred eEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCcc--ccCCCC-CCCCCcEEEEcCCCCCCCCC-Cce
Q 043646 235 MLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVK--INLRSR-NIDGYDAIFLATHKFLGGPG-TPG 307 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~--id~~~~-~~~~~D~v~~S~hK~lggp~-g~G 307 (625)
++|++++++||||.+.| +++|+++|++||+++|+|++++..... ...... ...+.++++.|++|++|.|+ ++|
T Consensus 146 ~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g 225 (361)
T 3ftb_A 146 DSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFG 225 (361)
T ss_dssp SEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCE
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCccee
Confidence 99999999999999986 566888888999999999998743321 111111 11133477789999997443 478
Q ss_pred EEE-EeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 043646 308 ILL-ISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDV 386 (625)
Q Consensus 308 ~l~-v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~ 386 (625)
+++ .++++.. .+... ....+++..+...+ .+.+ .+....+.+.++.+.
T Consensus 226 ~~~~~~~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~-~~~l-~~~~~~~~~~~~~~~ 274 (361)
T 3ftb_A 226 YGITNNKEIAA--KIKAK---------------------------QNPWNINCFAEMAA-INCL-KDTNYIEESLLWIKK 274 (361)
T ss_dssp EEEESCHHHHH--HHHTT---------------------------SCTTCSCHHHHHHH-HHTS-SCHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHH--HHHhh---------------------------CCCCCCCHHHHHHH-HHHh-cCHHHHHHHHHHHHH
Confidence 888 5555521 11100 01123333332211 1111 122345677788888
Q ss_pred HHHHHHHhhCCCCcEE-EeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh
Q 043646 387 YIESALGRILPNQNIQ-VLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY 465 (625)
Q Consensus 387 l~~~l~~~L~~l~gv~-v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~ 465 (625)
+++++.+.|.++|+++ +..+. +.++.+.+.. .+..++.+.|.+ +||.+++|..|...
T Consensus 275 ~~~~l~~~l~~~~~~~~~~~~~----~~~~~~~~~~----------------~~~~~l~~~l~~-~gi~v~~g~~~~~~- 332 (361)
T 3ftb_A 275 ERKRFIEELNKIGFIKRVFSPH----ANFVLCRLEN----------------ISGEKLYDSLLK-EDIVIRRCCNFIGL- 332 (361)
T ss_dssp HHHHHHHHHHHSSSEEEEECCS----SSEEEEEESS----------------SCHHHHHHHHHT-TTEECEECTTSTTC-
T ss_pred HHHHHHHHHHhCCCCceecCCC----CeEEEEEcCC----------------CCHHHHHHHHHH-CCeEEeeCccCCCC-
Confidence 8999999999899998 76553 3455444321 246788898876 59999999877511
Q ss_pred hHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 466 GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 466 ~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.++++||+++ +.+|+++++++|+.+.+.
T Consensus 333 --------------------------~~~~iRis~~---~~~~~~~l~~~l~~~~~~ 360 (361)
T 3ftb_A 333 --------------------------DDSFVRFAIK---DEKKNTKFLRALKGVENN 360 (361)
T ss_dssp --------------------------CTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred --------------------------CCCEEEEEcC---CHHHHHHHHHHHHHHHhc
Confidence 2589999997 889999999999987653
No 79
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.95 E-value=5.8e-26 Score=243.47 Aligned_cols=338 Identities=15% Similarity=0.125 Sum_probs=223.5
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
+++.+.+++.+.+.... .... |.......++.+.+.+++.+.+|. +++ +|++| +|+++++..++.++
T Consensus 50 ~~~~v~~a~~~~~~~~~--~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~-~v~~t-~g~t~a~~~~~~~~------ 118 (407)
T 2zc0_A 50 PRAVLGEIAKEVLEKEP--KSVM-YTPANGIPELREELAAFLKKYDHLEVSPE-NIVIT-IGGTGALDLLGRVL------ 118 (407)
T ss_dssp CHHHHHHHHHHHHHHCG--GGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGG-GEEEE-SHHHHHHHHHHHHH------
T ss_pred CHHHHHHHHHHHHhhcc--cccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcc-eEEEe-cCHHHHHHHHHHHh------
Confidence 56788888887764310 0000 111111234444444444444484 444 89998 78889899988887
Q ss_pred hhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhh-CCCCeEE-EEecccC
Q 043646 167 IMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKA-AKRPMLG-SFSACSN 244 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~-~~~~~lv-~~~~~~n 244 (625)
+++||+ |++..+.|+++...++..|++++.++.++++ +|+++|+++++.... .+++++| ++++++|
T Consensus 119 ---------~~~gd~--vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~n 186 (407)
T 2zc0_A 119 ---------IDPGDV--VITENPSYINTLLAFEQLGAKIEGVPVDNDG-MRVDLLEEKIKELKAKGQKVKLIYTIPTGQN 186 (407)
T ss_dssp ---------CCTTCE--EEEEESCCHHHHHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCT
T ss_pred ---------cCCCCE--EEEeCCChHHHHHHHHHcCCEEEEcccCCCC-CCHHHHHHHHHhhhcccCCceEEEECCCCCC
Confidence 467875 8898999999888888889999999987665 899999999972111 1368886 5789999
Q ss_pred ccccccCHH---HHHHHHHHcCCEEEEeccCcCCCc----cccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEecccc
Q 043646 245 VTGIYSDTR---SIARLLHQYGGFACFDFAASGPYV----KINLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALY 316 (625)
Q Consensus 245 ~TG~~~~l~---~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~ 316 (625)
|||.+.|.+ +|+++|++||+++|+|++++.+.. ...+..+...+.++++.|++|+++ |+ .+|++++++++.
T Consensus 187 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~ 265 (407)
T 2zc0_A 187 PMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLG-TGFRIGWIIAEGEIL 265 (407)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTC-TTSCCEEEECCHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccC-CCcceEEEecCHHHH
Confidence 999999986 999999999999999999886432 122322211234578889999998 64 489999987762
Q ss_pred ccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh---h-cCHHHHHHHHHHHHHHHH
Q 043646 317 QLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE---Y-IGYEVIKKQEDVYIESAL 392 (625)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~---~-~g~~~i~~~~~~l~~~l~ 392 (625)
. .+.+.. .....+++.+... ++..++ .. . ...+.+.++.+.+++++.
T Consensus 266 ~--~~~~~~------------------------~~~~~~~~~~~~~--~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~l~ 316 (407)
T 2zc0_A 266 K--KVLMQK------------------------QPIDFCAPAISQY--IALEYL-KRGYFEKYHLEGALLGYKEKRDIML 316 (407)
T ss_dssp H--HHHHHH------------------------TTTTSSSCHHHHH--HHHHHH-HTTHHHHHTTTTHHHHHHHHHHHHH
T ss_pred H--HHHHHH------------------------HhhcCCCCHHHHH--HHHHHH-HcCCchHHHHHHHHHHHHHHHHHHH
Confidence 1 111000 0011122222221 112222 11 1 334566777778888888
Q ss_pred HhhCC-CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhc
Q 043646 393 GRILP-NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLA 471 (625)
Q Consensus 393 ~~L~~-l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~ 471 (625)
+.|.+ +|++++..+. .+.+.+...+. +++..++.+.|.+++||.+++|..|..+.
T Consensus 317 ~~L~~~~~~~~~~~~~----~~~~~~~~~~~--------------~~~~~~l~~~l~~~~gi~v~~g~~~~~~~------ 372 (407)
T 2zc0_A 317 KALENHLPNAEFTKPI----AGMFVMFFLPE--------------GADGISFANELMEREGVVVVPGKPFYTDE------ 372 (407)
T ss_dssp HHHHHHCTTSCBCCCS----BSSEEEEECST--------------TCCHHHHHHHHHHHTCEECBCSGGGCSSS------
T ss_pred HHHHHhCCCCEEecCC----CcEEEEEEcCC--------------CCCHHHHHHHHHHhCCeEEECchhccCCC------
Confidence 88876 5777665542 34444333331 23467888888776699999987664210
Q ss_pred CChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 472 FDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 472 ~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
..++++||+++.. +++|+++++++|++++.+.
T Consensus 373 -------------------~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 373 -------------------SGKNAIRLNFSRP-SKEEIPIGIKKLAKLYKEK 404 (407)
T ss_dssp -------------------CCTTEEEEECSSS-CTTHHHHHHHHHHHHHHHH
T ss_pred -------------------CCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence 0248999999877 8999999999999987653
No 80
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.95 E-value=3e-25 Score=238.33 Aligned_cols=344 Identities=10% Similarity=0.024 Sum_probs=233.0
Q ss_pred ccccCCCCCCceEeccCCCC--CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEE
Q 043646 67 VEFDYSFGKRRLTYADHTAS--GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIF 144 (625)
Q Consensus 67 ~~~~~p~g~~~~~Yld~~~~--~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vif 144 (625)
..+..+-| +.+++|..+.. .+.++.+.+++.+.+..+....+. +.......+..+++++++++++|.+. .+++
T Consensus 51 ~~~~~~~g-~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~--~~~~~g~~~~~~~l~~~la~~~g~~~--~i~~ 125 (409)
T 3kki_A 51 LVLGKQAS-PDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFM--SASFLQNDYDKPMIEKRLAKFTGFDE--CLLS 125 (409)
T ss_dssp TTCCCCCC-TTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCCS--BGGGGCSTTTSCHHHHHHHHHHTCSE--EEEE
T ss_pred eeeCCCCC-CceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCCc--cccccCCcHHHHHHHHHHHHHhCCCe--EEEe
Confidence 34444545 33444433321 124678999998888653222211 22222234556779999999999863 3555
Q ss_pred eCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHH
Q 043646 145 CGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQ 224 (625)
Q Consensus 145 t~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~ 224 (625)
+ +|+ +++..++.++ +++||. |+++.++|+++..+++..|++++.++. .|+++|+++
T Consensus 126 ~-sGt-~a~~~~l~~~---------------~~~gd~--Vl~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~le~~ 181 (409)
T 3kki_A 126 Q-SGW-NANVGLLQTI---------------CQPNTN--VYIDFFAHMSLWEGARYANAQAHPFMH-----NNCDHLRML 181 (409)
T ss_dssp S-CHH-HHHHHHHHHH---------------CCTTCE--EEEETTSCHHHHHHHHHTTCEEEEECT-----TCHHHHHHH
T ss_pred c-chH-HHHHHHHHHh---------------cCCCCE--EEECCCcCHHHHHHHHHcCCeEEEecC-----CCHHHHHHH
Confidence 4 787 5555555555 478885 999999999999999999999988875 589999999
Q ss_pred HHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCC----CCC-CCCCcEEEEcCCCC
Q 043646 225 LELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLR----SRN-IDGYDAIFLATHKF 299 (625)
Q Consensus 225 l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~----~~~-~~~~D~v~~S~hK~ 299 (625)
+++ .++++|++++++||||.+.|+++|.++|++||+++|+|++++.+.....-. ..+ ...+|+++.|++|+
T Consensus 182 l~~----~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~ 257 (409)
T 3kki_A 182 IQR----HGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKT 257 (409)
T ss_dssp HHH----HCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSST
T ss_pred HHh----cCCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchh
Confidence 985 357999999999999999999999999999999999999998754321100 000 12579999999999
Q ss_pred CCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHH--HHHHHHHHHHHhhcCH
Q 043646 300 LGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQ--MIRAALAFWVKEYIGY 377 (625)
Q Consensus 300 lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~--~~~aal~~~~~~~~g~ 377 (625)
++++ | |+++.++++. +.+.... ....+. ++.+... .+.++++.. +..
T Consensus 258 ~~~~-g-g~v~~~~~~~--~~~~~~~----------------------~~~~~~-~~~~~~~~aa~~aal~~~--~~~-- 306 (409)
T 3kki_A 258 FAYR-A-GAIWCNNEVN--RCVPFIS----------------------YPAIFS-STLLPYEAAGLETTLEII--ESA-- 306 (409)
T ss_dssp TCSS-C-EEEEESSSGG--GTHHHHC----------------------HHHHHS-BCCCHHHHHHHHHHHHHH--HHC--
T ss_pred hCCC-c-eEEEECHHHH--HHHHHhC----------------------cCcccc-CCCcHHHHHHHHHHHHHH--hcC--
Confidence 9865 4 8999888772 2211000 001111 1222222 223444443 222
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeec
Q 043646 378 EVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARG 457 (625)
Q Consensus 378 ~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~ 457 (625)
+.+.++.+++++++.+.|.++ ++++.+ ...++.+.+.... ...++.+.|.+ .||.+++
T Consensus 307 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~-----~~~~~~~~~~~~~---------------~~~~~~~~L~~-~Gv~v~~ 364 (409)
T 3kki_A 307 DNRRQHLDRMARKLRIGLSQL-GLTIRS-----ESQIIGLETGDER---------------NTEKVRDYLES-NGVFGSV 364 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-TCCCCC-----SSSEEEEEEESHH---------------HHHHHHHHHHH-TTEECEE
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCccCC-----CCCEEEEEeCCHH---------------HHHHHHHHHHH-CCceEee
Confidence 567778888899999999887 665542 3456655553211 23468888866 5999987
Q ss_pred CCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 458 GCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 458 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
++.+..+. .++++||+++.+++++|+++++++|++++..
T Consensus 365 ~~~~~~~~--------------------------~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 365 FCRPATSK--------------------------NKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp ECTTSSCT--------------------------TCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eCCCCcCC--------------------------CCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 66543221 2589999999999999999999999998765
No 81
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.94 E-value=3.4e-26 Score=243.17 Aligned_cols=332 Identities=14% Similarity=0.032 Sum_probs=229.8
Q ss_pred eEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 043646 78 LTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRL 156 (625)
Q Consensus 78 ~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l 156 (625)
.++|+.+... +.++.+.+++.+.+.. .+. |... ....++++.++++++++++ +|++| +|+++++..+
T Consensus 27 ~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~----y~~~----~~~~~l~~~la~~~~~~~~-~v~~~-~g~~~a~~~~ 94 (381)
T 1v2d_A 27 AVNLGQGFPSNPPPPFLLEAVRRALGR--QDQ----YAPP----AGLPALREALAEEFAVEPE-SVVVT-SGATEALYVL 94 (381)
T ss_dssp CEECCCCSCSSCCCHHHHHHHHHHTTT--SCS----CCCT----TCCHHHHHHHHHHHTSCGG-GEEEE-SSHHHHHHHH
T ss_pred eEEecCCCCCCCCCHHHHHHHHHHHHH--hcC----CCCC----CCCHHHHHHHHHhcCCChh-hEEEc-CChHHHHHHH
Confidence 3444443332 3568899999887753 111 1111 1245688999999999876 79998 7888888888
Q ss_pred HHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecC---CCCCCCHHHHHHHHHHhhhCCC
Q 043646 157 QEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLD---DNGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~---~~~~ld~~~L~~~l~~~~~~~~ 233 (625)
+.++ +++||+ |+++.+.|+++...++..|++++.++.+ +++.+|+++|+++++ ++
T Consensus 95 ~~~~---------------~~~gd~--Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~-----~~ 152 (381)
T 1v2d_A 95 LQSL---------------VGPGDE--VVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALT-----PR 152 (381)
T ss_dssp HHHH---------------CCTTCE--EEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCC-----TT
T ss_pred HHHh---------------CCCCCE--EEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcC-----cC
Confidence 8776 467875 8999999999988888899999999987 456789999999886 57
Q ss_pred CeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc---cccCCCCCCCCCcEEEEcCCCCCCCCC-Cc
Q 043646 234 PMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---KINLRSRNIDGYDAIFLATHKFLGGPG-TP 306 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~---~id~~~~~~~~~D~v~~S~hK~lggp~-g~ 306 (625)
+++|++++++||||.+.| +++|+++|++||+++|+|++++.... +.++..+ ..+.|+++.|+||+++.|+ .+
T Consensus 153 ~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~-~~~~~~~~~s~sK~~~~~G~r~ 231 (381)
T 1v2d_A 153 TRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF-APERTFTVGSAGKRLEATGYRV 231 (381)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH-CTTTEEEEEEHHHHTTCGGGCC
T ss_pred CEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHh-cCCCEEEEeechhhcCCcccce
Confidence 899999999999999976 78999999999999999999875432 2232211 1367999999999997442 27
Q ss_pred eEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH--HHHHHHHHHHhhcCHHHHHHHH
Q 043646 307 GILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM--IRAALAFWVKEYIGYEVIKKQE 384 (625)
Q Consensus 307 G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~--~~aal~~~~~~~~g~~~i~~~~ 384 (625)
|++++++++.+ .+.. .......+++.... +.+++.... ...+.+.+.++.
T Consensus 232 G~~~~~~~~~~--~~~~-------------------------~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~ 283 (381)
T 1v2d_A 232 GWIVGPKEFMP--RLAG-------------------------MRQWTSFSAPTPLQAGVAEALKLAR-REGFYEALREGY 283 (381)
T ss_dssp EEEECCTTTHH--HHHH-------------------------HHHHHTSSCCHHHHHHHHHHHHHHH-HTTHHHHHHHHH
T ss_pred EEEEeCHHHHH--HHHH-------------------------HHhhcccCCCcHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 99999877621 1100 01111223333222 223333211 133467788888
Q ss_pred HHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCch
Q 043646 385 DVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464 (625)
Q Consensus 385 ~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~ 464 (625)
+.+++++.+.|.+. +++++.+. .+.+.+...+. . ++.+.| +++||.+++|..|...
T Consensus 284 ~~~~~~l~~~L~~~-g~~~~~~~----~~~~~~~~~~~-----------------~-~~~~~l-~~~gi~v~~g~~~~~~ 339 (381)
T 1v2d_A 284 RRRRDLLAGGLRAM-GLRVYVPE----GTYFLMAELPG-----------------W-DAFRLV-EEARVALIPASAFYLE 339 (381)
T ss_dssp HHHHHHHHHHHHHT-TCCEECCS----BSSEEEEECTT-----------------C-CHHHHH-HHTCEECEEGGGGCSS
T ss_pred HHHHHHHHHHHHHC-CCEecCCC----cceEEEEecCh-----------------H-hHHHHH-HhCCEEEecchHhCCC
Confidence 88999999999875 78877653 24343333331 0 255555 5689999988776521
Q ss_pred hhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 465 YGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
. ..++++||+++. +++++++++++|++++++.
T Consensus 340 ~-------------------------~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~ 371 (381)
T 1v2d_A 340 D-------------------------PPKDLFRFAFCK--TEEELHLALERLGRVVNSP 371 (381)
T ss_dssp S-------------------------CCTTEEEEECCS--CHHHHHHHHHHHHHHC---
T ss_pred C-------------------------CCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhc
Confidence 0 024899999986 8999999999999887654
No 82
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.94 E-value=2.4e-25 Score=240.90 Aligned_cols=356 Identities=14% Similarity=0.042 Sum_probs=234.0
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCC-C-CCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLP-F-YGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTA 151 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~-~-~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGtta 151 (625)
.++.|+.+... ++++.+.+++.+.+.. . ...+. .....++.+.+.+++.+.+|. +++ +|++| +|+++
T Consensus 45 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~g~~~lr~~la~~~~~~~g~~~~~~-~i~~t-~g~t~ 116 (437)
T 3g0t_A 45 KFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPN------LDGLPELKQEASRFAKLFVNIDIPAR-ACVPT-VGSMQ 116 (437)
T ss_dssp CCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCC------TTCCHHHHHHHHHHHHHHHCCCCCGG-GEEEE-SHHHH
T ss_pred CEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCC------CCChHHHHHHHHHHHHHhhCCCCCcc-cEEEe-CCHHH
Confidence 45666655443 3468899998887742 1 11111 111233444444444444443 344 89998 78999
Q ss_pred HHHHHHHHhcccccchhhhhhhhcc--CCCC--ceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHH
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSL--RDEE--RWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLE 226 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l--~~gd--~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~ 226 (625)
++..++.++ + ++|| + |+++.+.|+++...++..|++++.+++++ +..+|+++|++++.
T Consensus 117 al~~~~~~l---------------~~~~~gd~~~--Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~ 179 (437)
T 3g0t_A 117 GCFVSFLVA---------------NRTHKNREYG--TLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQ 179 (437)
T ss_dssp HHHHHHHHH---------------TTSCTTCSCC--EEEEESCCHHHHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHT
T ss_pred HHHHHHHHH---------------hcCCCCCccE--EEEeCCCcHhHHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHh
Confidence 999988876 3 6888 7 88889999999888898999999999975 44689999999994
Q ss_pred HhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCcc--ccC-------CCCC-CCCCcEEE
Q 043646 227 LYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVK--INL-------RSRN-IDGYDAIF 293 (625)
Q Consensus 227 ~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~--id~-------~~~~-~~~~D~v~ 293 (625)
. +++++|++++++||||.+.| +++|+++|++||+++|+|++++..... ..+ ..+. ..+.++++
T Consensus 180 ~----~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 255 (437)
T 3g0t_A 180 T----GQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILA 255 (437)
T ss_dssp T----TCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEE
T ss_pred c----CCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEE
Confidence 2 57999999999999999987 677899999999999999998753221 111 1111 12567889
Q ss_pred EcCCCCCCCC-CCceEEEEeccccccC-CCCCcc--cCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHH
Q 043646 294 LATHKFLGGP-GTPGILLISKALYQLG-SSPPST--CGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAF 369 (625)
Q Consensus 294 ~S~hK~lggp-~g~G~l~v~~~~~~l~-~~~p~~--~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~ 369 (625)
.|+||++|.| .++|++++++++. . ...... .+++.. ...++... ......+++......+ ..+
T Consensus 256 ~s~sK~~~~~G~r~G~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~~~~~a~-~~~ 322 (437)
T 3g0t_A 256 LSSSKAFSYAGQRIGVLMISGKLY--EREYPDLEESFGRLRF---------GEALSSSA-LYALSSGATHSAQWGM-AAM 322 (437)
T ss_dssp EESTTTTSCGGGCCEEEEECHHHH--HCBCGGGHHHHSCSBH---------HHHHHTTH-HHHHHSSSCHHHHHHH-HHH
T ss_pred EcCccCCCCccceeEEEEECHHHh--hhhhhcccccccccch---------hHHHHHHH-HhhhcCCCCHHHHHHH-HHH
Confidence 9999999733 3489999988773 2 211110 000000 00001111 1111233333332221 222
Q ss_pred HHHhhcC---HHHHHHHHHHHHHHHHHhhCCCCcEEEe------CCCCCCCcceEEEEeccCCCCCCccccccCCCCCCh
Q 043646 370 WVKEYIG---YEVIKKQEDVYIESALGRILPNQNIQVL------GNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHG 440 (625)
Q Consensus 370 ~~~~~~g---~~~i~~~~~~l~~~l~~~L~~l~gv~v~------~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~ 440 (625)
+.....+ .+.+.++...+++++.+.|.++ ++++. .+. ..+.+.+...++ ++.
T Consensus 323 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~---~~~~~~~~~~~~---------------~~~ 383 (437)
T 3g0t_A 323 LKACNDGEYNFRDSVIEYGRKARIMKKMFLDN-GFNIVYDKDGNEPL---ADGFYFTVGYKG---------------MDS 383 (437)
T ss_dssp HHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEEESSCEETTEEC---CSSSEEEEEETT---------------CCH
T ss_pred HhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCEEeccccCCCCC---ceeEEEEEecCC---------------CCH
Confidence 2111112 7788889999999999999988 88887 231 123333433332 346
Q ss_pred HHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 441 PFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 441 ~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.++.+.|.+ +||.+++|..|+.. .++++|||+++ .+++|+++++++|++++
T Consensus 384 ~~l~~~L~~-~gi~v~~~~~~~~~---------------------------~~~~iRis~~~-~~~e~i~~~~~~l~~~~ 434 (437)
T 3g0t_A 384 SKLIEKFVR-YGMCAITLKTTGSK---------------------------RNEAMRICTSL-LPESQFPDLEKRLQMLN 434 (437)
T ss_dssp HHHHHHHHH-TTEECEESTTTTCC---------------------------CTTCEEEECSS-SCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCeEEeeccccCCC---------------------------CCCEEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 788998866 69999998877521 23789999994 49999999999999987
Q ss_pred Hh
Q 043646 521 AY 522 (625)
Q Consensus 521 ~~ 522 (625)
++
T Consensus 435 ~~ 436 (437)
T 3g0t_A 435 AE 436 (437)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 83
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.94 E-value=2.1e-25 Score=237.94 Aligned_cols=339 Identities=11% Similarity=0.008 Sum_probs=227.8
Q ss_pred CceEeccCCCCCc-chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHH
Q 043646 76 RRLTYADHTASGR-SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAA 152 (625)
Q Consensus 76 ~~~~Yld~~~~~~-~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaa 152 (625)
+..++|+.+.... .++.+.+++.+.+... .. .|.......++.+++.+++.+.+|. +++ +|++| +|++++
T Consensus 31 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~----~~-~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~v~~t-~g~~~a 103 (391)
T 3h14_A 31 RRIIHMEVGQPGTGAPRGAVEALAKSLETD----AL-GYTVALGLPALRQRIARLYGEWYGVDLDPG-RVVIT-PGSSGG 103 (391)
T ss_dssp CCCEECCCSSCSSCSCHHHHHHHHHHHC---------------CCHHHHHHHHHHHHHHHCCCCCGG-GEEEE-SSHHHH
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhcC----CC-CCCCCCChHHHHHHHHHHHHHHhCCCCCHH-HEEEe-cChHHH
Confidence 3566776655443 4678999998877431 00 1111111344555555555555564 444 89998 788888
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC--CCCCHHHHHHHHHHhhh
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN--GLLDIEALRSQLELYKA 230 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--~~ld~~~L~~~l~~~~~ 230 (625)
+..++.++ +++||+ |+++.+.|+++...++..|++++.++++.+ ..+|+++|+++
T Consensus 104 l~~~~~~l---------------~~~gd~--vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~------ 160 (391)
T 3h14_A 104 FLLAFTAL---------------FDSGDR--VGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL------ 160 (391)
T ss_dssp HHHHHHHH---------------CCTTCE--EEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS------
T ss_pred HHHHHHHh---------------cCCCCE--EEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc------
Confidence 99888877 478885 889999999998889999999999999864 36799888654
Q ss_pred CCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc---cccCCCCCCCCCcEEEEcCCCCCCCC-
Q 043646 231 AKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---KINLRSRNIDGYDAIFLATHKFLGGP- 303 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~---~id~~~~~~~~~D~v~~S~hK~lggp- 303 (625)
++++|++++++||||.+.| +++|+++|++||+++|+|++++.... +...... ...++++.|++|++|.|
T Consensus 161 --~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~g~~G 236 (391)
T 3h14_A 161 --DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALEL--TDECYVINSFSKYFSMTG 236 (391)
T ss_dssp --CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT--CSSSEEEEESSSTTCCTT
T ss_pred --CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhc--CCCEEEEEechhccCCcc
Confidence 5899999999999999988 88899999999999999999875332 2222221 24568888999999734
Q ss_pred CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHH
Q 043646 304 GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQ 383 (625)
Q Consensus 304 ~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~ 383 (625)
.++|++++++++.. .+.. ......++++......+ .+.+ ......+.+.++
T Consensus 237 ~r~G~~~~~~~~~~--~~~~-------------------------~~~~~~~~~~~~~~~a~-~~~l-~~~~~~~~~~~~ 287 (391)
T 3h14_A 237 WRVGWMVVPEDQVR--VVER-------------------------IAQNMFICAPHASQVAA-LAAL-DCDAELQANLDV 287 (391)
T ss_dssp SCCEEEECCGGGHH--HHHH-------------------------HHHHTTCCCCHHHHHHH-HHHT-TCHHHHHHHHHH
T ss_pred ceeEEEEeCHHHHH--HHHH-------------------------HHhhhccCCCHHHHHHH-HHHh-CChHHHHHHHHH
Confidence 34799998877621 1100 01111233333332211 1111 122345677778
Q ss_pred HHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc
Q 043646 384 EDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG 463 (625)
Q Consensus 384 ~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~ 463 (625)
.+.+++++.+.|.+++...+..+ ..+.+.+...+.. +.+..++.+.|.+++||.+++|..|+.
T Consensus 288 ~~~~~~~l~~~l~~~~~~~~~~~----~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~gi~v~~g~~~~~ 350 (391)
T 3h14_A 288 YKANRKLMLERLPKAGFTRIAPP----DGAFYVYADVSDL-------------TDDSRAFAAEILEKAGVAVTPGLDFDP 350 (391)
T ss_dssp HHHHHHHHHHHHHHHTCCCBCCC----CBTTEEEEECTTT-------------CSCHHHHHHHHHHHHCEECEEGGGTCT
T ss_pred HHHHHHHHHHHHHHcCCCcccCC----CeeEEEEEecCcc-------------CCCHHHHHHHHHHHCCEEEcCchhhCC
Confidence 88888899998887633322333 2344444433321 234678888887777999999988863
Q ss_pred hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 464 PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+. .++++||+++. +++|++.++++|++++.+
T Consensus 351 ~~--------------------------~~~~iRis~~~--~~~~i~~~l~~l~~~~~~ 381 (391)
T 3h14_A 351 ER--------------------------GAGTLRFSYAR--ATADIEEGLDRLEAFMQA 381 (391)
T ss_dssp TT--------------------------GGGEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred CC--------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 11 24899999986 789999999999998765
No 84
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.94 E-value=2e-25 Score=237.31 Aligned_cols=333 Identities=14% Similarity=0.060 Sum_probs=229.1
Q ss_pred eEeccCCCCC----cchHHHHHHHHHhhCCC-CCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 78 LTYADHTASG----RSLRYIEDYIINNVLPF-YGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 78 ~~Yld~~~~~----~~p~~v~ea~~~~l~~~-~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
..|+|.+++. ++++.+.+++.+.+... ..++.. .+.. .......++++.+++++|.+ +.+++++|+ ++
T Consensus 39 ~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~-~~~~--g~~~~~~~l~~~la~~~g~~---~~i~~~sGt-~a 111 (384)
T 1bs0_A 39 RQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGS-GHVS--GYSVVHQALEEELAEWLGYS---RALLFISGF-AA 111 (384)
T ss_dssp EEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSB-TTTT--CCCHHHHHHHHHHHHHHTCS---EEEEESCHH-HH
T ss_pred ceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCc-Cccc--CChHHHHHHHHHHHHHhCCC---cEEEeCCcH-HH
Confidence 4577776633 46789999998877432 111111 1111 12356788999999999985 344555885 55
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~ 232 (625)
+..++.++ +++||. |+++.++|.++...++..|++++.+|. .|+++|++++++. .+
T Consensus 112 ~~~~~~~~---------------~~~gd~--v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~--~~ 167 (384)
T 1bs0_A 112 NQAVIAAM---------------MAKEDR--IAADRLSHASLLEAASLSPSQLRRFAH-----NDVTHLARLLASP--CP 167 (384)
T ss_dssp HHHHHHHH---------------CCTTCE--EEEETTCCHHHHHHHHTSSSEEEEECT-----TCHHHHHHHHHSC--CS
T ss_pred HHHHHHHh---------------CCCCcE--EEEcccccHHHHHHHHHcCCCEEEeCC-----CCHHHHHHHHHhc--CC
Confidence 66666665 467874 899999999999899989999999984 4899999999741 12
Q ss_pred CCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCcc---ccC-CCCCCCCCcEEEEcCCCCCCCCCCceE
Q 043646 233 RPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVK---INL-RSRNIDGYDAIFLATHKFLGGPGTPGI 308 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~---id~-~~~~~~~~D~v~~S~hK~lggp~g~G~ 308 (625)
++++|++++++||||.+.|+++|.++|++||+++|+|++++.+... ..+ ..++ .++|+++.|+||+++ |.| |+
T Consensus 168 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~di~~~s~sK~~~-~~G-G~ 244 (384)
T 1bs0_A 168 GQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQK-VKPELLVVTFGKGFG-VSG-AA 244 (384)
T ss_dssp SCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTT-CCCSEEEEESSSTTS-SCC-EE
T ss_pred CCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcC-CCCcEEEeeccchhh-ccC-cE
Confidence 4789999999999999999999999999999999999999876432 111 1111 257999999999998 666 99
Q ss_pred EEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCC-ChhHHHH--HHHHHHHHHHhhcCHHHHHHHHH
Q 043646 309 LLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGG-TPQIVQM--IRAALAFWVKEYIGYEVIKKQED 385 (625)
Q Consensus 309 l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~g-t~~~~~~--~~aal~~~~~~~~g~~~i~~~~~ 385 (625)
+++++++.. .+.+. ...+..+ +++.... +.++++.. +....+.+.++.+
T Consensus 245 ~~~~~~~~~--~l~~~------------------------~~~~~~~~~~~~~~~~~~~~al~~~--~~~~~~~~~~~~~ 296 (384)
T 1bs0_A 245 VLCSSTVAD--YLLQF------------------------ARHLIYSTSMPPAQAQALRASLAVI--RSDEGDARREKLA 296 (384)
T ss_dssp EEECHHHHH--HHHHH------------------------CHHHHSSBCCCHHHHHHHHHHHHHH--HSHHHHHHHHHHH
T ss_pred EEeCHHHHH--HHHHh------------------------chhhhcCCCCCHHHHHHHHHHHHHH--hccccHHHHHHHH
Confidence 999877622 11100 0011111 2333332 23444443 2113457788888
Q ss_pred HHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh
Q 043646 386 VYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY 465 (625)
Q Consensus 386 ~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~ 465 (625)
++++++.+.|.++ ++++..+ .++++.+.+... .+..++.+.|.+ .||.+++|..++.+.
T Consensus 297 ~~~~~l~~~L~~~-g~~~~~~----~~~~~~~~~~~~---------------~~~~~l~~~l~~-~gi~v~~~~~~~~~~ 355 (384)
T 1bs0_A 297 ALITRFRAGVQDL-PFTLADS----CSAIQPLIVGDN---------------SRALQLAEKLRQ-QGCWVTAIRPPTVPA 355 (384)
T ss_dssp HHHHHHHHHHTTS-SCEECSC----CSSBCCEEEESH---------------HHHHHHHHHHHH-TTEECCEECTTSSCT
T ss_pred HHHHHHHHHHHhc-CCcccCC----CCCEEEEEeCCH---------------HHHHHHHHHHHH-CCcEEEeecCCCCCC
Confidence 9999999999987 6777632 334444444211 124578888866 599999876543110
Q ss_pred hHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 466 GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 466 ~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
..+++||+++.+++++|+++++++|+++
T Consensus 356 --------------------------~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 356 --------------------------GTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp --------------------------TCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred --------------------------CCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 2489999999999999999999999865
No 85
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.94 E-value=1.9e-25 Score=238.23 Aligned_cols=340 Identities=10% Similarity=0.028 Sum_probs=231.7
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHH-HHHHHHHHHHHHhC--CCCCCcEEEeCChHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTK-MVHEASNYIKRCLG--GGQADAIIFCGAGTTA 151 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~-~~~~~~~~ia~~~g--~~~~~~vift~sGtta 151 (625)
+..++|..+... +.++.|.+++.+.+... .. .|... ..+ +.+++.+++.+.+| .+++ +|++| +|+++
T Consensus 28 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~-~y~~~--~~~~lr~~la~~l~~~~g~~~~~~-~v~~t-~g~~~ 98 (390)
T 1d2f_A 28 ADLLPFTISDMDFATAPCIIEALNQRLMHG----VF-GYSRW--KNDEFLAAIAHWFSTQHYTAIDSQ-TVVYG-PSVIY 98 (390)
T ss_dssp --CEECCSSSCSSCCCHHHHHHHHHHHTTC----CC-CCCCS--CCHHHHHHHHHHHHHHSCCCCCGG-GEEEE-SCHHH
T ss_pred CCeeEeeecCCCCCCCHHHHHHHHHHHhCC----CC-CCCCC--ChHHHHHHHHHHHHHhcCCCCCHH-HEEEc-CCHHH
Confidence 456777665543 46788999998877421 11 11111 233 55556666666667 4444 89998 78898
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCC---CCCHHHHHHHHHHh
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNG---LLDIEALRSQLELY 228 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~---~ld~~~L~~~l~~~ 228 (625)
++..++.++ +++||+ |++..+.|+++...++..|++++.+|++.++ .+|+++|++++++
T Consensus 99 al~~~~~~l---------------~~~gd~--vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~- 160 (390)
T 1d2f_A 99 MVSELIRQW---------------SETGEG--VVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK- 160 (390)
T ss_dssp HHHHHHHHS---------------SCTTCE--EEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS-
T ss_pred HHHHHHHHh---------------cCCCCE--EEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhcc-
Confidence 899988876 467875 8888999999988888899999999987532 4899999999973
Q ss_pred hhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCCCCCC-cEEEEcCCCCC
Q 043646 229 KAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRNIDGY-DAIFLATHKFL 300 (625)
Q Consensus 229 ~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~~~~~-D~v~~S~hK~l 300 (625)
.++++|++++++||||.+.| +++|+++|++||+++|+|++++.... ..++..+.. .+ |. +.|++|++
T Consensus 161 ---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-~~~d~-~~s~sK~~ 235 (390)
T 1d2f_A 161 ---PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVAR-GDWAL-LTSGSKSF 235 (390)
T ss_dssp ---TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCC-SSEEE-EECSHHHH
T ss_pred ---CCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcch-hhHhh-ccCccHhh
Confidence 37899999999999999987 78999999999999999999886432 223332211 22 67 89999999
Q ss_pred CCCC-CceEEEEe-ccccccCCCCCcccCCceEEeeccccccccccccchhh-hhcCCChhHHHHHH--HHHHHHHHhhc
Q 043646 301 GGPG-TPGILLIS-KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEE-RENGGTPQIVQMIR--AALAFWVKEYI 375 (625)
Q Consensus 301 ggp~-g~G~l~v~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~-~~~~gt~~~~~~~~--aal~~~~~~~~ 375 (625)
|.|+ .+|+++++ +++. +.+.+. .. ....++++..+... +++.. ...
T Consensus 236 ~~~G~r~G~~~~~~~~~~--~~~~~~------------------------~~~~~~~~~~~~~~~~a~~~~l~~---~~~ 286 (390)
T 1d2f_A 236 NIPALTGAYGIIENSSSR--DAYLSA------------------------LKGRDGLSSPSVLALTAHIAAYQQ---GAP 286 (390)
T ss_dssp TCGGGCCEEEEECSHHHH--HHHHHH------------------------HHTTSCCCSCCHHHHHHHHHHHHH---CHH
T ss_pred cccChhheEEEECCHHHH--HHHHHH------------------------HhhhcccCCCCHHHHHHHHHHHhc---CHH
Confidence 7443 37999986 4542 111100 01 11223444444322 22221 122
Q ss_pred CHHHHHHHHHHHHHHHHHhhCC-CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCee
Q 043646 376 GYEVIKKQEDVYIESALGRILP-NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQ 454 (625)
Q Consensus 376 g~~~i~~~~~~l~~~l~~~L~~-l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~ 454 (625)
..+.+.++.+.+++++.+.|.+ +|+++++.+ .++.+.+...+.. +++..++.+.|.+++||.
T Consensus 287 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~~~~~~-------------~~~~~~l~~~l~~~~gi~ 349 (390)
T 1d2f_A 287 WLDALRIYLKDNLTYIADKMNAAFPELNWQIP----QSTYLAWLDLRPL-------------NIDDNALQKALIEQEKVA 349 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCC----SBCSEEEEECGGG-------------CCCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCEEecC----CccEEEEEEcccc-------------CCCHHHHHHHHHHHcCEE
Confidence 3566777888888999999987 788876654 3455544433320 134667888887568999
Q ss_pred eecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 455 ARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 455 v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+++|..|... .++++||+++. ++++++.+++.|++++.+
T Consensus 350 v~~g~~f~~~---------------------------~~~~~Ris~~~--~~~~l~~~l~~l~~~l~~ 388 (390)
T 1d2f_A 350 IMPGYTYGEE---------------------------GRGFVRLNAGC--PRSKLEKGVAGLINAIRA 388 (390)
T ss_dssp CEEGGGGCGG---------------------------GTTEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred eeCccccCCC---------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 9998776410 24899999985 589999999999988754
No 86
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.94 E-value=1.1e-25 Score=240.66 Aligned_cols=342 Identities=13% Similarity=0.070 Sum_probs=232.6
Q ss_pred ceEeccCCCCCc---chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHH
Q 043646 77 RLTYADHTASGR---SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~~---~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal 153 (625)
..++|+.+...+ +++.+.+++.+.+.... .....|.. .....++++.+++++|.+++ +|++| +|+++++
T Consensus 33 ~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~y~~----~~~~~~l~~~la~~~g~~~~-~v~~~-~g~~~al 104 (397)
T 2zyj_A 33 GILSFAGGLPAPELFPKEEAAEAAARILREKG--EVALQYSP----TEGYAPLRAFVAEWIGVRPE-EVLIT-TGSQQAL 104 (397)
T ss_dssp TCEEESSCCCCGGGCCHHHHHHHHHHHHHHHH--HHHTSCCC----TTCCHHHHHHHHHHHTSCGG-GEEEE-SHHHHHH
T ss_pred CceecCCCCCCchhCCHHHHHHHHHHHHHhcc--hhhhCCCC----CCCCHHHHHHHHHHhCCChh-hEEEe-ccHHHHH
Confidence 467776654332 56788888877664210 00000100 11245688899999997665 89998 8999999
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCC
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~ 233 (625)
..++.++ +++||+ |++..+.|+++...++..|++++.++.++++ +|+++|++++++ .+
T Consensus 105 ~~~~~~~---------------~~~gd~--Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~-~d~~~l~~~l~~----~~ 162 (397)
T 2zyj_A 105 DLVGKVF---------------LDEGSP--VLLEAPSYMGAIQAFRLQGPRFLTVPAGEEG-PDLDALEEVLKR----ER 162 (397)
T ss_dssp HHHHHHH---------------CCTTCE--EEEEESCCHHHHHHHHTTCCEEEEEEEETTE-ECHHHHHHHHHH----CC
T ss_pred HHHHHHh---------------CCCCCE--EEEeCCCcHHHHHHHHHcCCEEEecCcCCCC-CCHHHHHHHHhh----cC
Confidence 9888877 467875 8888899999988888899999999987665 899999999984 36
Q ss_pred CeEE-EEecccCccccccCHH---HHHHHHHHcCCEEEEeccCcCCCc----cccCCCCCCC---CCcEEEEcCCCCCCC
Q 043646 234 PMLG-SFSACSNVTGIYSDTR---SIARLLHQYGGFACFDFAASGPYV----KINLRSRNID---GYDAIFLATHKFLGG 302 (625)
Q Consensus 234 ~~lv-~~~~~~n~TG~~~~l~---~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~~~---~~D~v~~S~hK~lgg 302 (625)
+++| ++++++||||.+.|.+ +|+++|++||+++|+|++++.... +.++..+..+ +..+++.|+||+++
T Consensus 163 ~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~- 241 (397)
T 2zyj_A 163 PRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS- 241 (397)
T ss_dssp CSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTC-
T ss_pred CeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccc-
Confidence 8877 5799999999998855 899999999999999999886432 2233322111 22378889999998
Q ss_pred CC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhh--cCHHH
Q 043646 303 PG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEY--IGYEV 379 (625)
Q Consensus 303 p~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~--~g~~~ 379 (625)
|+ ++|++++++++.. .+.+ .......+++.+.+. ++.+++ ... ...+.
T Consensus 242 ~G~r~G~~~~~~~~~~--~l~~------------------------~~~~~~~~~~~~~~~--a~~~~l-~~~~~~~~~~ 292 (397)
T 2zyj_A 242 PGLRVAFAVAHPEALQ--KLVQ------------------------AKQGADLHTPMLNQM--LVHELL-KEGFSERLER 292 (397)
T ss_dssp GGGCCEEEECCHHHHH--HHHH------------------------HHHHHHSSCCHHHHH--HHHHHH-TTTHHHHHHH
T ss_pred ccceeEEEecCHHHHH--HHHH------------------------HHHhhcCCCCHHHHH--HHHHHH-HhCCHHHHHH
Confidence 53 5799999877621 1110 011122344333332 222232 111 12456
Q ss_pred HHHHHHHHHHHHHHhhCC-CC-cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeec
Q 043646 380 IKKQEDVYIESALGRILP-NQ-NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARG 457 (625)
Q Consensus 380 i~~~~~~l~~~l~~~L~~-l~-gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~ 457 (625)
+.++.+.+++++.+.|.+ +| ++++..+. .+.+.+...+. +++..++.+.|.+ +||.+++
T Consensus 293 ~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~----~g~~~~~~~~~--------------~~~~~~~~~~l~~-~gi~v~~ 353 (397)
T 2zyj_A 293 VRRVYREKAQAMLHALDREVPKEVRYTRPK----GGMFVWMELPK--------------GLSAEGLFRRALE-ENVAFVP 353 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTSEECCCS----BSSEEEEECST--------------TCCHHHHHHHHHH-TTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCeEEccCC----ccEEEEEEcCC--------------CCCHHHHHHHHHH-CCCEEec
Confidence 667777788888888876 57 68876553 24444443331 2346688888876 5999998
Q ss_pred CCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 458 GCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 458 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
|..|... +..++++||+++.. +++|+++++++|++++++.
T Consensus 354 g~~f~~~-------------------------~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~ 393 (397)
T 2zyj_A 354 GGPFFAN-------------------------GGGENTLRLSYATL-DREGIAEGVRRLGRALKGL 393 (397)
T ss_dssp SGGGCTT-------------------------SCCTTEEEEECSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred hHHhcCC-------------------------CCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHH
Confidence 8766411 00248999999875 8999999999999988664
No 87
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.94 E-value=3.7e-26 Score=241.90 Aligned_cols=331 Identities=13% Similarity=-0.001 Sum_probs=227.0
Q ss_pred CceEeccCCCCCc-chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHH
Q 043646 76 RRLTYADHTASGR-SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG--GGQADAIIFCGAGTTAA 152 (625)
Q Consensus 76 ~~~~Yld~~~~~~-~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g--~~~~~~vift~sGttaa 152 (625)
+..++|+.+.... .++.+.+++.+.+.... . .|.......++.+++.+++.+.+| .+++ +|++| +|++++
T Consensus 29 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~----~-~y~~~~~~~~l~~~la~~~~~~~g~~~~~~-~v~~~-~g~~~a 101 (370)
T 2z61_A 29 KKVIHLEIGEPDFNTPKPIVDEGIKSLKEGK----T-HYTDSRGILELREKISELYKDKYKADIIPD-NIIIT-GGSSLG 101 (370)
T ss_dssp CCCEECCCCSCSSCCCHHHHHHHHHHHHTTC----C-SCCCTTCCHHHHHHHHHHHHHHSSCCCCGG-GEEEE-SSHHHH
T ss_pred CCEEEccCCCCCCCCCHHHHHHHHHHHHcCc----c-CCCCCCCCHHHHHHHHHHHHHHhCCCCChh-hEEEC-CChHHH
Confidence 3577888776653 46889999888774310 0 111111223444555555555455 3444 89998 788888
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~ 232 (625)
+..++.++ +++||+ |+++.+.|+++...++..|++++.++ +|+++|+++++ +
T Consensus 102 ~~~~~~~~---------------~~~gd~--vl~~~p~~~~~~~~~~~~g~~~~~v~------~d~~~l~~~l~-----~ 153 (370)
T 2z61_A 102 LFFALSSI---------------IDDGDE--VLIQNPCYPCYKNFIRFLGAKPVFCD------FTVESLEEALS-----D 153 (370)
T ss_dssp HHHHHHHH---------------CCTTCE--EEEESSCCTHHHHHHHHTTCEEEEEC------SSHHHHHHHCC-----S
T ss_pred HHHHHHHh---------------cCCCCE--EEEeCCCchhHHHHHHHcCCEEEEeC------CCHHHHHHhcc-----c
Confidence 98888877 467875 99999999999988988999999988 68999999887 4
Q ss_pred CCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCc---cccCCCC-CCCCCcEEEEcCCCCCCCCC-Cce
Q 043646 233 RPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV---KINLRSR-NIDGYDAIFLATHKFLGGPG-TPG 307 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~---~id~~~~-~~~~~D~v~~S~hK~lggp~-g~G 307 (625)
++++|++++++||||.+.|.+ |.++|++||+++|+|++++.+.. +.++..+ ...+.|+++.|+||++|.|+ .+|
T Consensus 154 ~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 232 (370)
T 2z61_A 154 KTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIG 232 (370)
T ss_dssp SEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCE
T ss_pred CceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEE
Confidence 789999999999999999999 99999999999999999886543 2233222 12367899999999997343 279
Q ss_pred EEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHH
Q 043646 308 ILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQED 385 (625)
Q Consensus 308 ~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~ 385 (625)
++++++++.. .+.+. .. ...++++..... .++++.+ .....+.+.++.+
T Consensus 233 ~~~~~~~~~~--~~~~~------------------------~~-~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~ 283 (370)
T 2z61_A 233 YVISNDEIIE--AILKL------------------------QQ-NLFISAPTISQYAALKAFEKE--TEREINSMIKEFD 283 (370)
T ss_dssp EEECCHHHHH--HHHHH------------------------HH-HHTSSSCHHHHHHHGGGGSHH--HHHHHHHHHHHHH
T ss_pred EEEECHHHHH--HHHHH------------------------Hh-hcccCCCHHHHHHHHHHHhcc--CHHHHHHHHHHHH
Confidence 9999887621 11100 00 111233333221 1222210 1223456777888
Q ss_pred HHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh
Q 043646 386 VYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY 465 (625)
Q Consensus 386 ~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~ 465 (625)
.+++++.+.|.++ ++++..+. .+.+.+...+. +..++.+.|.+++||.+++|..|+..
T Consensus 284 ~~~~~l~~~L~~~-g~~~~~~~----~~~~~~~~~~~----------------~~~~~~~~l~~~~gi~v~~g~~f~~~- 341 (370)
T 2z61_A 284 RRRRLVLKYVKDF-GWEVNNPI----GAYYVFPNIGE----------------DGREFAYKLLKEKFVALTPGIGFGSK- 341 (370)
T ss_dssp HHHHHHHHHHHHT-TCBCCCCC----BTTEECCBCSS----------------CHHHHHHHHHHHHCEECEEGGGGCGG-
T ss_pred HHHHHHHHHHHHc-CCeecCCC----cceEEEEecCC----------------CHHHHHHHHHHhCCEEEeCchhhCCC-
Confidence 8889999999877 77665442 34444333321 35678888865689999988766410
Q ss_pred hHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 466 GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 466 ~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.++++||+++ +++++++.+++.|++++.
T Consensus 342 --------------------------~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 342 --------------------------GKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp --------------------------GSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred --------------------------CCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 1488999998 699999999999998763
No 88
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.94 E-value=3.6e-26 Score=240.02 Aligned_cols=329 Identities=12% Similarity=0.068 Sum_probs=224.4
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
+..+||+++..+++++.+.+++.+.+.. +...+ ......+++++++++++| . +++++||++ +++++..
T Consensus 7 ~~~id~~~~~~~~~~~~v~~a~~~~~~~-----~~~~~----~~~~~~~~l~~~la~~~g-~-~~~v~~~~~-gt~a~~~ 74 (356)
T 1v72_A 7 PPALGFSSDNIAGASPEVAQALVKHSSG-----QAGPY----GTDELTAQVKRKFCEIFE-R-DVEVFLVPT-GTAANAL 74 (356)
T ss_dssp CCCCBCSCGGGCCCCHHHHHHHHHTTSS-----CCCST----TCSHHHHHHHHHHHHHHT-S-CCEEEEESC-HHHHHHH
T ss_pred CceEeeccCCccCCCHHHHHHHHhhccC-----ccccc----ccchHHHHHHHHHHHHhC-C-CCcEEEeCC-ccHHHHH
Confidence 4578898888888889999999887531 11111 123567889999999999 4 336899854 5555666
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH--HHHc--CCeEEEEecCCCCCCCHHHHHH-HHHHh--
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS--WRQS--LAEVVEIGLDDNGLLDIEALRS-QLELY-- 228 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~--~~~~--G~~vv~v~~~~~~~ld~~~L~~-~l~~~-- 228 (625)
++.++ +++||+ |+++.++|++.... +... |++++.++.+ ++.+|+++|++ ++++.
T Consensus 75 al~~~---------------~~~gd~--vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~~i~~~~~ 136 (356)
T 1v72_A 75 CLSAM---------------TPPWGN--IYCHPASHINNDECGAPEFFSNGAKLMTVDGP-AAKLDIVRLRERTREKVGD 136 (356)
T ss_dssp HHHTS---------------CCTTEE--EEECTTSHHHHSSTTHHHHHTTSCEEEECCCG-GGCCCHHHHHHHTTSSTTC
T ss_pred HHHHh---------------cCCCCE--EEEcCccchhhhhchHHHHHhCCcEEEEecCC-CCeEcHHHHHHHhhhcchh
Confidence 66554 467774 99999999887655 7777 9999999875 46899999999 88731
Q ss_pred hhCCCCeEEEEecccCcccc---ccCHHHHHHHHHHcCCEEEEeccCcCCC---ccccCCCCCC-CCCcEEEEcCCCCCC
Q 043646 229 KAAKRPMLGSFSACSNVTGI---YSDTRSIARLLHQYGGFACFDFAASGPY---VKINLRSRNI-DGYDAIFLATHKFLG 301 (625)
Q Consensus 229 ~~~~~~~lv~~~~~~n~TG~---~~~l~~I~~la~~~g~~vivD~A~~~g~---~~id~~~~~~-~~~D~v~~S~hK~lg 301 (625)
...+++++|++++++| ||. ..++++|.++|++||+++|+|++++.+. .......... .++|++++|+||+ |
T Consensus 137 ~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g 214 (356)
T 1v72_A 137 VHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-G 214 (356)
T ss_dssp TTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-T
T ss_pred hccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-C
Confidence 0112689999999876 999 4558899999999999999999976321 1111111110 1679999999999 7
Q ss_pred CCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCC---hhHHHHHHHHHHHHHHhhcCHH
Q 043646 302 GPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGT---PQIVQMIRAALAFWVKEYIGYE 378 (625)
Q Consensus 302 gp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt---~~~~~~~~aal~~~~~~~~g~~ 378 (625)
+|.|+|++++++++.. .+.... ...|+ ...... .++++++ +...++
T Consensus 215 ~~~G~g~~~~~~~~~~--~~~~~~--------------------------~~~~~~~~~~~~~~-~~~~~~l--~~~~~~ 263 (356)
T 1v72_A 215 VLAAEAIVLFNTSLAT--EMSYRR--------------------------KRAGHLSSKMRFLS-AQIDAYL--TDDLWL 263 (356)
T ss_dssp CSSCEEEEESSGGGHH--HHHHHH--------------------------HHTTCCCSSTHHHH-HHHHHHT--STTHHH
T ss_pred CcCccEEEEECHHHHh--hHHHHh--------------------------hccCchhhhHHHHH-HHHHHHH--HhhhHH
Confidence 7887788888877621 111000 00111 111111 1222332 222244
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecC
Q 043646 379 VIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGG 458 (625)
Q Consensus 379 ~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G 458 (625)
.+.++.+.+++++.+.|.+++++++..+. ...++.+.+ + .++.+.|.+ +||.+++|
T Consensus 264 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---~~~~~~~~~-~-------------------~~~~~~l~~-~gi~v~~g 319 (356)
T 1v72_A 264 RNARKANAAAQRLAQGLEGLGGVEVLGGT---EANILFCRL-D-------------------SAMIDALLK-AGFGFYHD 319 (356)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTEEEESCC---CSSEEEEEE-C-------------------HHHHHHHHH-TTCBCBCS
T ss_pred HHHHHHHHHHHHHHHHHhhCCCcEEccCC---CccEEEEEc-C-------------------HHHHHHHHh-cCeEEecc
Confidence 56677788899999999998899987653 233333322 2 267888854 79999876
Q ss_pred CCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 459 CACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 459 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
. +. ++++||++++.++++|+++++++|++++++
T Consensus 320 ~-~~------------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~ 352 (356)
T 1v72_A 320 R-WG------------------------------PNVVRFVTSFATTAEDVDHLLNQVRLAADR 352 (356)
T ss_dssp S-SS------------------------------TTEEEEECCTTCCHHHHHHHHHHHHHTC--
T ss_pred c-cC------------------------------CCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 5 21 278999999999999999999999987654
No 89
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.94 E-value=6.7e-26 Score=241.33 Aligned_cols=342 Identities=12% Similarity=0.041 Sum_probs=231.6
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC-CCC-cEEEeCChHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG-QAD-AIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~-~~~-~vift~sGttaal 153 (625)
..++|+.+... +.++.+.+++.+.+... .. .|.......++.+++.+++++.+|.+ ..+ +|++| +|+++++
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~-~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~-~g~~~a~ 104 (386)
T 1u08_A 31 QAINLSQGFPDFDGPRYLQERLAHHVAQG----AN-QYAPMTGVQALREAIAQKTERLYGYQPDADSDITVT-AGATEAL 104 (386)
T ss_dssp TCEECCCSSCSSCCCHHHHHHHHHHHHTT----CC-SCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEE-SSHHHHH
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHhh----cc-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEc-CChHHHH
Confidence 35677766543 35688999998877431 00 11111223556666777777777864 334 79998 7888889
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCC
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~ 232 (625)
..++.++ +++||+ |+++.+.|+++...++..|++++.++.+. ++.+|+++|+++++ +
T Consensus 105 ~~~~~~~---------------~~~gd~--vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~-----~ 162 (386)
T 1u08_A 105 YAAITAL---------------VRNGDE--VICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLS-----E 162 (386)
T ss_dssp HHHHHHH---------------CCTTCE--EEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCC-----T
T ss_pred HHHHHHh---------------CCCCCE--EEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhc-----c
Confidence 8888876 467875 88899999999888888999999999876 56799999999986 5
Q ss_pred CCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCC-CCCCcEEEEcCCCCCCCCC
Q 043646 233 RPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRN-IDGYDAIFLATHKFLGGPG 304 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~-~~~~D~v~~S~hK~lggp~ 304 (625)
++++|++++++||||.+.| +++|+++|++||+++|+|++++.... ...+..+. ..+.|+++.|+||++|.|+
T Consensus 163 ~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 242 (386)
T 1u08_A 163 RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTG 242 (386)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGG
T ss_pred cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcc
Confidence 7999999999999999986 68899999999999999999875221 11222110 1257899999999997333
Q ss_pred -CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHH
Q 043646 305 -TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQ 383 (625)
Q Consensus 305 -g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~ 383 (625)
.+|++++++++.. .+.+. .. ....+.+..... ++...+.......+.+.++
T Consensus 243 ~r~G~~~~~~~~~~--~l~~~------------------------~~-~~~~~~~~~~~~-a~~~~l~~~~~~~~~~~~~ 294 (386)
T 1u08_A 243 WKVGYCVAPAPISA--EIRKV------------------------HQ-YLTFSVNTPAQL-ALADMLRAEPEHYLALPDF 294 (386)
T ss_dssp GCCEEEECCHHHHH--HHHHH------------------------HH-HHTSSCCHHHHH-HHHHHHHHCTHHHHTHHHH
T ss_pred cceEEEEcCHHHHH--HHHHH------------------------HH-hhccCCChHHHH-HHHHHHhCCcHHHHHHHHH
Confidence 2799999877621 11100 00 111222222221 1122221112335677888
Q ss_pred HHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc
Q 043646 384 EDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG 463 (625)
Q Consensus 384 ~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~ 463 (625)
.+.+++++.+.|.++ ++++..+. .+.+.+...+.. ...+..++.+.|.+++||.+++|..|..
T Consensus 295 ~~~~~~~l~~~L~~~-g~~~~~~~----~g~~~~~~~~~~------------~~~~~~~~~~~l~~~~gi~v~~g~~f~~ 357 (386)
T 1u08_A 295 YRQKRDILVNALNES-RLEILPCE----GTYFLLVDYSAV------------STLDDVEFCQWLTQEHGVAAIPLSVFCA 357 (386)
T ss_dssp HHHHHHHHHHHTTSS-SCEECCCC----BSSEEEEECTTT------------CCSCHHHHHHHHHHHSCEECEEGGGGCS
T ss_pred HHHHHHHHHHHHHHC-CCeecCCC----ceEEEEEecCCC------------CCCCHHHHHHHHHHhCCEEEeCchHhCC
Confidence 888999999999987 78876553 233333333321 0134667888776668999998865431
Q ss_pred hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 464 PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
.. ..++++||+++ ++++++++++++|++
T Consensus 358 ~~-------------------------~~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 358 DP-------------------------FPHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp SC-------------------------CCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred CC-------------------------CCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 10 02589999997 489999999998863
No 90
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.94 E-value=2e-25 Score=239.91 Aligned_cols=349 Identities=10% Similarity=0.032 Sum_probs=229.0
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaal 153 (625)
..+.|..+... ..++.+.+++.+.+... ....|.......++.+.+.+++.+.+|. +++++|++| +|+++++
T Consensus 38 ~~idl~~g~~~~~~~~~v~~a~~~~~~~~----~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t-~g~~~a~ 112 (412)
T 2x5d_A 38 DIIDLSMGNPDGPTPPHIVEKLCTVAQRE----DTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVT-IGSKEGL 112 (412)
T ss_dssp CCEECSSCCCCSCCCHHHHHHHHHTC-------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEE-SCHHHHH
T ss_pred CEEecCCCCCCCCCCHHHHHHHHHHHhCC----CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEc-CChHHHH
Confidence 45566555433 35678999988876431 0101111111234444444444444486 331389998 7888889
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC-C-CCCHHHHHHHHHHhhhC
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN-G-LLDIEALRSQLELYKAA 231 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~-~-~ld~~~L~~~l~~~~~~ 231 (625)
..++.++ +++||+ |+++.+.|+++...++..|++++.++.+.+ + .+|+++|+++++
T Consensus 113 ~~~~~~~---------------~~~gd~--Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~----- 170 (412)
T 2x5d_A 113 AHLMLAT---------------LDHGDT--ILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESI----- 170 (412)
T ss_dssp HHHHHHH---------------CCTTCE--EEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEE-----
T ss_pred HHHHHHh---------------CCCCCE--EEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhcc-----
Confidence 9888876 467885 999999999998888889999999998864 3 378899988886
Q ss_pred CCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCC-CCCCcEEEEcCCCCCCCC
Q 043646 232 KRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRN-IDGYDAIFLATHKFLGGP 303 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~-~~~~D~v~~S~hK~lggp 303 (625)
+++++|++++++||||.+.| +++|+++|++||+++|+|++++.+.. ..++..+. ..+.|+++.|+||++|.|
T Consensus 171 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 250 (412)
T 2x5d_A 171 PKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMA 250 (412)
T ss_dssp SCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCT
T ss_pred cCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCc
Confidence 57899999999999999977 58899999999999999999886542 22333221 125689999999999744
Q ss_pred C-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHH
Q 043646 304 G-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKK 382 (625)
Q Consensus 304 ~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~ 382 (625)
+ .+|++++++++.. .+.. .......+.+...... +.+++.......+.+.+
T Consensus 251 G~r~G~~~~~~~~~~--~l~~-------------------------~~~~~~~~~~~~~~~a-~~~~l~~~~~~~~~~~~ 302 (412)
T 2x5d_A 251 GWRIGFMVGNPELVS--ALAR-------------------------IKSYHDYGTFTPLQVA-AIAALEGDQQCVRDIAR 302 (412)
T ss_dssp TSCCEEEEECHHHHH--HHHH-------------------------HHHHHCCCCCHHHHHH-HHHHHHSCSHHHHHHHH
T ss_pred ccceEEEEcCHHHHH--HHHH-------------------------HHhhhccCCCHHHHHH-HHHHHhCCHHHHHHHHH
Confidence 4 4799999877621 1110 0011112333333222 22222111223567778
Q ss_pred HHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC
Q 043646 383 QEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA 462 (625)
Q Consensus 383 ~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~ 462 (625)
+.+.+++++.+.|.++ +++++.+ ..+.+.+...+... ...+..++++.|.+++||.+++|..|.
T Consensus 303 ~~~~~~~~l~~~L~~~-g~~~~~~----~~g~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~gi~v~~g~~f~ 366 (412)
T 2x5d_A 303 QYQQRRDVLVKGLREA-GWMVENP----KASMYVWAKIPEPY-----------AHLGSLEFAKKLLQDAKVSVSPGIGFG 366 (412)
T ss_dssp HHHHHHHHHHHHHHHH-TCCCCCC----SBSSEEEEECCTTT-----------GGGCHHHHHHHHHHHHCEECEEGGGGC
T ss_pred HHHHHHHHHHHHHHHC-CCEecCC----CeeeEEEEEcCCcc-----------CCCCHHHHHHHHHHHCCEEEeCchhhC
Confidence 8888899999998876 6665543 33544444333110 001356788888666799999987764
Q ss_pred chhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 463 GPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
.. .++++||+++. ++++++.+++.|++++.+...
T Consensus 367 ~~---------------------------~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~~~ 400 (412)
T 2x5d_A 367 DY---------------------------GDDHVRFALIE--NRDRLRQAVRGIKAMFRADGL 400 (412)
T ss_dssp GG---------------------------GTTEEEEECCS--CHHHHHHHHHHHHHHHHHTTC
T ss_pred CC---------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHhcCC
Confidence 11 14899999986 899999999999999877543
No 91
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.94 E-value=2e-25 Score=240.17 Aligned_cols=354 Identities=14% Similarity=0.074 Sum_probs=224.3
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQ 157 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (625)
.+|...+-..+.++.+.+++. .. .. +.++.......+++++++++++|.+ ++++++ |.++++..++
T Consensus 23 pi~~s~~~~~~~~~~~~~~~~--~~----~~----~~y~~~~~~~~~~l~~~la~~~g~~---~~~~~~-~gt~a~~~al 88 (412)
T 2cb1_A 23 PIYAVAAYGFKTLEEGQERFA--TG----EG----YVYARQKDPTAKALEERLKALEGAL---EAVVLA-SGQAATFAAL 88 (412)
T ss_dssp CCCCCSBCCCSSHHHHHHHHH--HC----CS----CSBTTTCCHHHHHHHHHHHHHHTCS---EEEEES-SHHHHHHHHH
T ss_pred CccccceeecCChHHHHHHhc--cc----cC----cCcCCCCChHHHHHHHHHHHHhCCC---cEEEEC-CHHHHHHHHH
Confidence 456655555567777776653 11 11 1122223356788999999999975 688884 5566777777
Q ss_pred HHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH----cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCC
Q 043646 158 EVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ----SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~----~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~ 233 (625)
.++ +++||+ |+++..+|+++...+.. .|++++.++.+ +++|+++++ ++
T Consensus 89 ~~l---------------~~~gd~--vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------~~~l~~~i~-----~~ 140 (412)
T 2cb1_A 89 LAL---------------LRPGDE--VVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE------PEAVREALS-----AK 140 (412)
T ss_dssp HTT---------------CCTTCE--EEEETTCCHHHHHHHHHTTTTTTCEEEEECSS------HHHHHHHCC-----TT
T ss_pred HHH---------------hCCCCE--EEEeCCCchhHHHHHHHHHHHcCCEEEEECCC------HHHHHHHhc-----cC
Confidence 665 467885 99999999988777643 68999999863 889999887 57
Q ss_pred CeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC-ceEEEEe
Q 043646 234 PMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT-PGILLIS 312 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g-~G~l~v~ 312 (625)
+++|++++++|+||.+.|+++|+++|++||+++|+|++++.+......... +.|++++|+||++++|++ +|++++.
T Consensus 141 ~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~---~~di~~~S~~K~~~~~~~~~G~~~~~ 217 (412)
T 2cb1_A 141 TRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAW---GAHVVVESLTKWASGHGSVLGGAVLS 217 (412)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGG---TCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred CeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccCCcccc---CCeEEEECCcccccCCCCcEEEEEEe
Confidence 999999999999999999999999999999999999999877222211122 789999999999998876 7888876
Q ss_pred cccccc---CCC-CCcccCCceEEeeccccccccccccchhhh--hcCCC-hhHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 043646 313 KALYQL---GSS-PPSTCGGGTVNYVNAFDEKDTLYLEDIEER--ENGGT-PQIVQMIRAALAFWVKEYIGYEVIKKQED 385 (625)
Q Consensus 313 ~~~~~l---~~~-~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~--~~~gt-~~~~~~~~aal~~~~~~~~g~~~i~~~~~ 385 (625)
++.... ..+ .|...|+. +...+. ...+....... ...|. .+... +++.+. ....++...++..
T Consensus 218 ~~~~~~~~~~~~~~~~~~g~~---~~~~~~--~~~~~~~~r~~~~~~~g~~~~~~~---a~~~~~--~l~~l~~~~~~~~ 287 (412)
T 2cb1_A 218 RETELWRNYPQFLQPDLKGQI---PWEALR--ARCFPERVRTLGLSLCGMALSPFN---AYLLFQ--GLETVALRVARMS 287 (412)
T ss_dssp CCCSGGGGSGGGGCC----------HHHHG--GGHHHHHHHHHHTTTTCCCCCHHH---HHHHHH--HGGGHHHHHHHHH
T ss_pred ccccccccccccccccccccc---hhhccc--hHHHHHHHHHHHHHhcCCCCChHH---hHHHHc--CCchHHHHHHHHH
Confidence 632110 001 12221111 000000 00111111110 01121 11111 111111 1112344455566
Q ss_pred HHHHHHHHhhCCCCcEEEe-CCCC-------------CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhc
Q 043646 386 VYIESALGRILPNQNIQVL-GNTS-------------VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLF 451 (625)
Q Consensus 386 ~l~~~l~~~L~~l~gv~v~-~~~~-------------~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~ 451 (625)
.+++++.+.|.+.+++.++ .|.. ....++++|.+ . . ...+.+.| ++.
T Consensus 288 ~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~-~----------------~~~~~~~l-~~~ 348 (412)
T 2cb1_A 288 ETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G-D----------------LERASRFL-GAI 348 (412)
T ss_dssp HHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S-S----------------HHHHHHHH-HHC
T ss_pred HHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C-C----------------HHHHHHHH-HhC
Confidence 7899999999988888744 3321 13577888888 3 2 45666666 557
Q ss_pred CeeeecC---------CCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 452 GIQARGG---------CACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 452 gI~v~~G---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
||.+ +| ++|+.+. +. .+......+ .|+.++.+|+|++.++++++++.++++|++
T Consensus 349 ~i~~-~~s~g~~~sl~~~~~~~~-~~--~~~~~~~~~---------~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 349 RLLK-AANLGDARTLLVHPWTTT-HS--RLKEEARLQ---------AGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp SSEE-CSCCSCSSCEEECTTTTT-TT--TSCHHHHHH---------TTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred Ceee-ecccCCCcceeecCcccc-cc--cCCHHHHHh---------cCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 9999 88 4665321 11 111110000 234479999999999999999999999874
No 92
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.94 E-value=1.4e-25 Score=237.61 Aligned_cols=345 Identities=10% Similarity=0.021 Sum_probs=231.7
Q ss_pred cccCCCCCCceEeccCCCCC-cchHHHHHHHHHhhCC-CCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEE
Q 043646 68 EFDYSFGKRRLTYADHTASG-RSLRYIEDYIINNVLP-FYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG--GGQADAII 143 (625)
Q Consensus 68 ~~~~p~g~~~~~Yld~~~~~-~~p~~v~ea~~~~l~~-~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g--~~~~~~vi 143 (625)
.+++..| +.++.|..+... +.++.|.+++.+.+.. ... |.. .. .++.+.+.+++.+.+| .+++ +|+
T Consensus 16 ~~~d~~g-~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~------y~~-~~-~~lr~~la~~~~~~~~~~~~~~-~i~ 85 (377)
T 3fdb_A 16 MKWTRYG-QGVLPLWVAESDFSTCPAVLQAITDAVQREAFG------YQP-DG-SLLSQATAEFYADRYGYQARPE-WIF 85 (377)
T ss_dssp HHHHSSC-TTSEECCSSCCCSCCCHHHHHHHHHHHHTTCCS------SCC-SS-CCHHHHHHHHHHHHHCCCCCGG-GEE
T ss_pred ceeeccC-CCeeeecccCCCCCCCHHHHHHHHHHHHcCCCC------CCC-CC-HHHHHHHHHHHHHHhCCCCCHH-HEE
Confidence 3444455 456677655433 4678999999887753 111 111 11 2344445555555555 4444 899
Q ss_pred EeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHH
Q 043646 144 FCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRS 223 (625)
Q Consensus 144 ft~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~ 223 (625)
+| +|+++++..++.++ +++||+ |+++.+.|+++...++..|++++.++.+.+ +|+++|++
T Consensus 86 ~t-~g~~~a~~~~~~~~---------------~~~gd~--vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~d~~~l~~ 145 (377)
T 3fdb_A 86 PI-PDVVRGLYIAIDHF---------------TPAQSK--VIVPTPAYPPFFHLLSATQREGIFIDATGG--INLHDVEK 145 (377)
T ss_dssp EE-SCHHHHHHHHHHHH---------------SCTTCC--EEEEESCCTHHHHHHHHHTCCEEEEECTTS--CCHHHHHH
T ss_pred Ee-CChHHHHHHHHHHh---------------cCCCCE--EEEcCCCcHhHHHHHHHcCCEEEEccCCCC--CCHHHHHH
Confidence 98 78888898888877 478886 888999999998888889999999999876 99999999
Q ss_pred HHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCC-----ccccCCCCCCCCCcEEEEc
Q 043646 224 QLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY-----VKINLRSRNIDGYDAIFLA 295 (625)
Q Consensus 224 ~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~-----~~id~~~~~~~~~D~v~~S 295 (625)
+++ ++++++++++++||||.+.| +++|+++|++||+++|+|++++... ...++......+.++++.|
T Consensus 146 ~l~-----~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s 220 (377)
T 3fdb_A 146 GFQ-----AGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITA 220 (377)
T ss_dssp HHH-----TTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEEC
T ss_pred Hhc-----cCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEe
Confidence 998 46899999999999999986 5677778999999999999987522 2223322100133588899
Q ss_pred CCCCCCCCC-CceEEEE-eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh
Q 043646 296 THKFLGGPG-TPGILLI-SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE 373 (625)
Q Consensus 296 ~hK~lggp~-g~G~l~v-~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~ 373 (625)
++|++|.|+ .+|++++ ++++.. .+... . ....++++..+...+ .+.+...
T Consensus 221 ~sK~~g~~G~r~G~~~~~~~~~~~--~~~~~------------------------~-~~~~~~~~~~~~~a~-~~~l~~~ 272 (377)
T 3fdb_A 221 PSKAWNIAGLKCAQIIFSNPSDAE--HWQQL------------------------S-PVIKDGASTLGLIAA-EAAYRYG 272 (377)
T ss_dssp STTTTTCGGGCCEEEECCSHHHHH--HHHHS------------------------C-HHHHCCCCHHHHHHH-HHHHHHC
T ss_pred ChHhccCcchhheEEEeCCHHHHH--HHHHH------------------------H-HhhcCCCCHHHHHHH-HHHHhcc
Confidence 999997443 4788777 444421 11000 0 011123333332221 2222111
Q ss_pred hcCHHHHHHHHHHHHHHHHHhhCC-CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcC
Q 043646 374 YIGYEVIKKQEDVYIESALGRILP-NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFG 452 (625)
Q Consensus 374 ~~g~~~i~~~~~~l~~~l~~~L~~-l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~g 452 (625)
....+.+.++.+.+++++.+.|++ +|+++++.+. .+.+.+...+.. +.+ .++.+.|.+++|
T Consensus 273 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----~~~~~~~~~~~~-------------~~~-~~~~~~l~~~~g 334 (377)
T 3fdb_A 273 TDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQ----ATYLMWIDFRDT-------------TIE-GSPSEFFIEKAK 334 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCS----BCSEEEEECTTS-------------CCC-SCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCC----eeEEEEEECccc-------------CCC-HHHHHHHHHhCC
Confidence 223567778888889999999987 7899987653 344444333321 112 356677767679
Q ss_pred eeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 453 IQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 453 I~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
|.+++|..|+.+ .++++|||++ ++++++++++++|++++.+
T Consensus 335 i~v~~g~~~~~~---------------------------~~~~~Ris~~--~~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 335 VAMNDGAWFGED---------------------------GTGFCRLNFA--TSREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp EECEEGGGGCGG---------------------------GTTEEEEECC--SCHHHHHHHHHHHHHHHTT
T ss_pred EEecCChhccCC---------------------------CCCEEEEEeC--CCHHHHHHHHHHHHHHHhh
Confidence 999999877622 1489999998 3899999999999988754
No 93
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.94 E-value=9.1e-26 Score=242.56 Aligned_cols=351 Identities=13% Similarity=0.019 Sum_probs=233.0
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC-CCC-cEEEeCChHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG-QAD-AIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~-~~~-~vift~sGttaal 153 (625)
..++|+.+... +.++.+.+++.+.+... .. .|.......++.+++.+++.+.+|.+ ..+ +|++| +|+++++
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~-~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t-~g~~~al 99 (411)
T 2o0r_A 26 GAVNLGQGFPDEDGPPKMLQAAQDAIAGG----VN-QYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVT-VGATEAI 99 (411)
T ss_dssp TCEESSCSSCSSCCCHHHHHHHHHHHHTT----CC-SCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEE-EHHHHHH
T ss_pred CeeeccCcCCCCCCCHHHHHHHHHHHhcC----CC-CCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEe-CCHHHHH
Confidence 35677766554 45688999998887431 00 12112223456666777777777864 233 79998 7888889
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC---CCCCHHHHHHHHHHhhh
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN---GLLDIEALRSQLELYKA 230 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~---~~ld~~~L~~~l~~~~~ 230 (625)
..++.++ +++||+ |+++.+.|+++...++..|++++.++++.+ +.+|+++|+++++
T Consensus 100 ~~~~~~~---------------~~~gd~--Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~---- 158 (411)
T 2o0r_A 100 AAAVLGL---------------VEPGSE--VLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVT---- 158 (411)
T ss_dssp HHHHHHH---------------CCTTCE--EEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCC----
T ss_pred HHHHHHh---------------cCCCCE--EEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhc----
Confidence 9888877 467885 999999999998888889999999998653 4689999999987
Q ss_pred CCCCeEEEEecccCccccccCH---HHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCC-CCCCcEEEEcCCCCCCC
Q 043646 231 AKRPMLGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPYV----KINLRSRN-IDGYDAIFLATHKFLGG 302 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~~~l---~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~-~~~~D~v~~S~hK~lgg 302 (625)
+++++|++++++||||.+.|. ++|+++|++||+++|+|++++.+.. +..+..+. ..+.|+++.|+||++|.
T Consensus 159 -~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 237 (411)
T 2o0r_A 159 -PRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNC 237 (411)
T ss_dssp -TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTC
T ss_pred -cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCC
Confidence 578999999999999999774 8999999999999999999886432 12222221 12579999999999973
Q ss_pred CC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHH-HHHHHHHHHHHhhcCHHHH
Q 043646 303 PG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQ-MIRAALAFWVKEYIGYEVI 380 (625)
Q Consensus 303 p~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~-~~~aal~~~~~~~~g~~~i 380 (625)
|+ .+|++++++++.. .+.+. ......+.++..+ .+.++++. .....+.+
T Consensus 238 ~G~r~G~~~~~~~~~~--~l~~~------------------------~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~ 288 (411)
T 2o0r_A 238 TGWKIGWACGPAELIA--GVRAA------------------------KQYLSYVGGAPFQPAVALALDT---EDAWVAAL 288 (411)
T ss_dssp TTTCEEEEECCHHHHH--HHHHH------------------------HHHHTSCCCTTHHHHHHHHHHH---CHHHHHHH
T ss_pred ccceEEEEeeCHHHHH--HHHHH------------------------HhhccCCCChHHHHHHHHHHhC---ChHHHHHH
Confidence 43 2899999877621 11100 0001112222222 11222221 12235677
Q ss_pred HHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCC
Q 043646 381 KKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCA 460 (625)
Q Consensus 381 ~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~ 460 (625)
.++.+.+++++.+.|.++ ++++..+. .+.+.+...+.. ...+..++.+.|.+++||.+++|..
T Consensus 289 ~~~~~~~~~~l~~~L~~~-g~~~~~~~----~g~~~~~~~~~~------------~~~~~~~~~~~l~~~~gi~v~~g~~ 351 (411)
T 2o0r_A 289 RNSLRARRDRLAAGLTEI-GFAVHDSY----GTYFLCADPRPL------------GYDDSTEFCAALPEKVGVAAIPMSA 351 (411)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCEECCCC----BSSEEEEECGGG------------TCCCHHHHHHHHHHHHSEECEEGGG
T ss_pred HHHHHHHHHHHHHHHHHc-CCEecCCC----eeEEEEEecCCC------------CCCCHHHHHHHHHHhCCEEEcChhh
Confidence 788888899999999876 78876542 343433333321 0134567888776668999999877
Q ss_pred CCchh---hHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 461 CAGPY---GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 461 ~~~~~---~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
|.... .+.+... .++++||+++ ++++|+++++++|+++++.
T Consensus 352 f~~~~~~~~~~~~~~-------------------~~~~iRis~~--~~~e~i~~~~~~l~~~~~~ 395 (411)
T 2o0r_A 352 FCDPAAGQASQQADV-------------------WNHLVRFTFC--KRDDTLDEAIRRLSVLAER 395 (411)
T ss_dssp GSCCC--------CC-------------------GGGCEEEECC--SCHHHHHHHHHHHGGGGC-
T ss_pred hCCCccccccccccC-------------------CCCeEEEEec--CCHHHHHHHHHHHHHHHhc
Confidence 63211 1111110 1478999997 3899999999999876543
No 94
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.94 E-value=1.6e-26 Score=244.98 Aligned_cols=342 Identities=14% Similarity=0.072 Sum_probs=223.0
Q ss_pred hHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhh
Q 043646 90 LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMR 169 (625)
Q Consensus 90 p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~ 169 (625)
++.+.+++.+.+.... +. .....+++++.+++++|.+ +++|+++| ++++..++.+++
T Consensus 16 ~~~~~~a~~~~~~~~~-------~~----~~~~~~~l~~~la~~~~~~---~~i~~~sg-t~al~~~l~~l~-------- 72 (373)
T 3frk_A 16 EYEIKFKFEEIYKRNW-------FI----LGDEDKKFEQEFADYCNVN---YCIGCGNG-LDALHLILKGYD-------- 72 (373)
T ss_dssp HHHHHHHHHHHHHHTC-------CS----SSHHHHHHHHHHHHHHTSS---EEEEESCH-HHHHHHHHHHTT--------
T ss_pred CHHHHHHHHHHHHCCC-------cc----CCchHHHHHHHHHHHhCCC---eEEEeCCH-HHHHHHHHHHcC--------
Confidence 4567777766653211 11 1245678999999999985 67888555 556777777663
Q ss_pred hhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecC-CCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcccc
Q 043646 170 DKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLD-DNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGI 248 (625)
Q Consensus 170 ~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~-~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~ 248 (625)
+++||+ |+++..+|+++..+++..|++++.++++ .++.+|+++|+++++ +++++|+ ++|+||.
T Consensus 73 ------~~~gd~--Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~-----~~~~~v~---~~n~~G~ 136 (373)
T 3frk_A 73 ------IGFGDE--VIVPSNTFIATALAVSYTGAKPIFVEPDIRTYNIDPSLIESAIT-----EKTKAII---AVHLYGQ 136 (373)
T ss_dssp ------CCTTCE--EEEETTSCTHHHHHHHHHSCEEEEECEETTTTEECGGGTGGGCC-----TTEEEEE---EECCTTC
T ss_pred ------CCCcCE--EEECCCCcHHHHHHHHHcCCEEEEEeccccccCcCHHHHHHhcC-----CCCeEEE---EECCCcC
Confidence 468885 9999999999999999999999999998 467899999999887 5788877 6789999
Q ss_pred ccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEc--CCCCCCCCCCceEEEEeccccccCCCCCccc
Q 043646 249 YSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLA--THKFLGGPGTPGILLISKALYQLGSSPPSTC 326 (625)
Q Consensus 249 ~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S--~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ 326 (625)
+.|+++|.++|+++|+++|+|+||+.|.. ++.+.... ..|++++| .||++++++..|+++.++... .+.+.+...
T Consensus 137 ~~~l~~i~~l~~~~~~~li~D~a~~~g~~-~~~~~~~~-~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~-~~~~~~~~~ 213 (373)
T 3frk_A 137 PADMDEIKRIAKKYNLKLIEDAAQAHGSL-YKGMKVGS-LGDAAGFSFYPAKNLGSLGDGGAVVTNDKDL-AEKIKALSN 213 (373)
T ss_dssp CCCHHHHHHHHHHHTCEEEEECTTCTTCE-ETTEETTS-SSSEEEEECCTTSSSCCSSSCEEEEESCHHH-HHHHHHHHB
T ss_pred cccHHHHHHHHHHcCCEEEEECCcccCCE-ECCEeccc-cccEEEEeCcCCCccCccceeEEEEeCCHHH-HHHHHHHHh
Confidence 99999999999999999999999998766 55544411 26899888 559998635457777765421 112222222
Q ss_pred CCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCC
Q 043646 327 GGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGN 406 (625)
Q Consensus 327 ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~ 406 (625)
+|... .+. ....|.+.....+.+++.+. ...+.+.+.++.+.+++++.+.|.+++ +++...
T Consensus 214 ~g~~~-----------~~~-----~~~~g~~~~~~~~~aa~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 274 (373)
T 3frk_A 214 YGSEK-----------KYH-----HIYKGFNSRLDELQAGFLRV--KLKYLDKWNEERRKIAQKYIAGINNPN-VIIPVE 274 (373)
T ss_dssp TTCSB-----------TTB-----CCSCCCBCCCCHHHHHHHHH--HHHTHHHHHHHHHHHHHHHHHHCCCTT-EECCCC
T ss_pred cCccc-----------CCc-----cccccccCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCc-eEeccC
Confidence 22210 000 01112110011112223332 234567788889999999999999987 766433
Q ss_pred CCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCC----CCchhhHhhhcCC---hhhHHH
Q 043646 407 TSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCA----CAGPYGHTLLAFD---QTRSLE 479 (625)
Q Consensus 407 ~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~----~~~~~~~~~l~~~---~~~~~~ 479 (625)
........+.|.+... +..++.+.|.+ .||.++.+.. |...+.. ++.. .+.+..
T Consensus 275 ~~~~~~~~~~~~~~~~----------------~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 335 (373)
T 3frk_A 275 ADYAKHVWYTFVIRSE----------------KRDELQKYLNN-NGIGTLIHYPIPIHLQQAYKD--LGFKTGNFPIAEK 335 (373)
T ss_dssp CTTEECCCSSEEEEES----------------SHHHHHHHHHH-TTBCCBCSCSSCGGGSGGGGG--GCCCTTSSHHHHH
T ss_pred CCCCceeeEEEEEEeC----------------CHHHHHHHHHH-CCCCcccCcCCccccChHHHh--cCCCCCCCHHHHH
Confidence 2111222233333221 25688888865 6999997652 2211111 1110 011111
Q ss_pred HHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 480 IRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 480 ~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+ ..+.+|++++.++|++||++++++|+++..+
T Consensus 336 ~-----------~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~ 367 (373)
T 3frk_A 336 I-----------ANEILSIPIWYGMKNEEIEYVIDKINAWKLE 367 (373)
T ss_dssp H-----------HHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred H-----------HhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence 1 1378999999999999999999999876433
No 95
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.94 E-value=1.4e-25 Score=236.65 Aligned_cols=322 Identities=12% Similarity=-0.003 Sum_probs=224.8
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCC----CCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLP----FYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTT 150 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~----~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtt 150 (625)
+.+++|+.+... ++++.|.+++.+.+.. ...++.. ...++++++++++|++++ +|++| +|++
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~-----------~~~~lr~~la~~~g~~~~-~i~~t-~g~~ 92 (360)
T 3hdo_A 26 ASWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPSA-----------SSQKLREVAGELYGFDPS-WIIMA-NGSD 92 (360)
T ss_dssp TTSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCCS-----------SCHHHHHHHHHHHTCCGG-GEEEE-SSHH
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCCC-----------chHHHHHHHHHHhCcCcc-eEEEc-CCHH
Confidence 457888876554 4678999999888754 2222221 125689999999998766 89998 7888
Q ss_pred HHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhh
Q 043646 151 AAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKA 230 (625)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~ 230 (625)
+++..++.++ +++||+ |+++.+.|+++...++..|++++.++.+.++.+ ++++++
T Consensus 93 ~al~~~~~~l---------------~~~gd~--Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~--~~l~~~------ 147 (360)
T 3hdo_A 93 EVLNNLIRAF---------------AAEGEE--IGYVHPSYSYYGTLAEVQGARVRTFGLTGDFRI--AGFPER------ 147 (360)
T ss_dssp HHHHHHHHHH---------------CCTTCE--EEEESSSCTHHHHHHHHHTCEEEEECBCTTSSB--TTCCSS------
T ss_pred HHHHHHHHHH---------------hCCCCE--EEEcCCChHHHHHHHHHCCCEEEEeeCCCCCCH--HHHHhh------
Confidence 8899888877 578886 899999999998888999999999999876554 333221
Q ss_pred CCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCC--CccccCCCCCCCCCcEEEEcCCCCCCCCC-Cce
Q 043646 231 AKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP--YVKINLRSRNIDGYDAIFLATHKFLGGPG-TPG 307 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g--~~~id~~~~~~~~~D~v~~S~hK~lggp~-g~G 307 (625)
.+++++++++++||||.+.|+++|.++|+++|+++|+|++++.. .....+. ...+.++++.|++|++|.|+ ++|
T Consensus 148 -~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~--~~~~~~i~~~s~sK~~g~~G~r~G 224 (360)
T 3hdo_A 148 -YEGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAESNALELV--RRHENVVVTRTLSKSYSLAGMRIG 224 (360)
T ss_dssp -BCSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHH--HHCSSEEEEEESTTTTSCTTSCCE
T ss_pred -cCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCcchhHHh--ccCCCEEEEecchHhhcCCcccee
Confidence 24679999999999999999999999999999999999998741 1111110 11244688889999997443 479
Q ss_pred EEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 043646 308 ILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVY 387 (625)
Q Consensus 308 ~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l 387 (625)
++++++++.. .+. ......+++..+...+ .+.+ ......+.+.++.+++
T Consensus 225 ~~~~~~~~~~--~~~---------------------------~~~~~~~~~~~~~~a~-~~~l-~~~~~~~~~~~~~~~~ 273 (360)
T 3hdo_A 225 LAIARPEVIA--ALD---------------------------KIRDHYNLDRLAQAAC-VAAL-RDQAYLSECCRRIRET 273 (360)
T ss_dssp EEECCHHHHH--HHH---------------------------HHSCSCCSCHHHHHHH-HHHH-HCHHHHHHHHHHHHHH
T ss_pred eEeeCHHHHH--HHH---------------------------HhCCCCCCCHHHHHHH-HHHh-cCHHHHHHHHHHHHHH
Confidence 9998777621 110 0001122333332211 1222 1222356777888888
Q ss_pred HHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhH
Q 043646 388 IESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGH 467 (625)
Q Consensus 388 ~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~ 467 (625)
++++.+.|.++ ++++..+ .+.++.+.+ ++ .+..++.+.|.+ +||.+++|....
T Consensus 274 ~~~l~~~L~~~-~~~~~~~----~~~~~~~~~-~~---------------~~~~~l~~~l~~-~gi~v~~~~~~~----- 326 (360)
T 3hdo_A 274 REWFTTELRSI-GYDVIPS----QGNYLFATP-PD---------------RDGKRVYDGLYA-RKVLVRHFSDPL----- 326 (360)
T ss_dssp HHHHHHHHHHT-TCEECCC----SSSEEEEEC-TT---------------CCHHHHHHHHHH-TTEECBCCCSTT-----
T ss_pred HHHHHHHHHHC-CCEEcCC----CccEEEEEC-CC---------------CCHHHHHHHHHH-CCEEEEECCCCC-----
Confidence 99999999887 7877643 334444332 21 246788888854 799998754311
Q ss_pred hhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 468 TLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 468 ~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.++++|||++ +++|+++++++|+++.+..
T Consensus 327 ------------------------~~~~iRis~~---~~~e~~~l~~al~~~~~~~ 355 (360)
T 3hdo_A 327 ------------------------LAHGMRISIG---TREEMEQTLAALKEIGEGH 355 (360)
T ss_dssp ------------------------TTTSEEEECC---CHHHHHHHHHHHHHHHC--
T ss_pred ------------------------CCCEEEEEcC---CHHHHHHHHHHHHHHhccc
Confidence 2488999997 9999999999999886543
No 96
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.94 E-value=8.4e-26 Score=241.97 Aligned_cols=198 Identities=15% Similarity=0.139 Sum_probs=156.2
Q ss_pred ceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 043646 77 RLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRL 156 (625)
Q Consensus 77 ~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l 156 (625)
...|.|+.+.+...+.+.+++.. +.++.. .+.++.......+++++++++++|.+ + .+++ ++|+ +++..+
T Consensus 26 ~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~-~-~i~~-~sG~-~a~~~~ 95 (398)
T 2rfv_A 26 ALSTPIFQTSTFVFDSAEQGAAR-----FALEES-GYIYTRLGNPTTDALEKKLAVLERGE-A-GLAT-ASGI-SAITTT 95 (398)
T ss_dssp CSSCCCCCCSBCCCSSHHHHHHH-----C------CCSBTTTCCHHHHHHHHHHHHHHTCS-E-EEEE-SSHH-HHHHHH
T ss_pred CcCCCCcCCCccccCCHHHHHHh-----hcCCCC-CCceeCCCChHHHHHHHHHHHHhCCC-c-EEEE-CCHH-HHHHHH
Confidence 46788888888887788777752 123322 12333334567888999999999986 2 4555 4777 778877
Q ss_pred HHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH----HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC
Q 043646 157 QEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~----~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~ 232 (625)
+.++ +++||+ |+++.++|+++...+ +..|++++.++.+ |+++|+++++ +
T Consensus 96 l~~~---------------~~~gd~--vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~-----~ 148 (398)
T 2rfv_A 96 LLTL---------------CQQGDH--IVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-----KPEEIRAAMR-----P 148 (398)
T ss_dssp HHHH---------------CCTTCE--EEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCC-----T
T ss_pred HHHH---------------hCCCCE--EEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhcC-----C
Confidence 7766 467875 999999999998777 6679999999875 8999999887 5
Q ss_pred CCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEE
Q 043646 233 RPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILL 310 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~ 310 (625)
++++|++++++||||.+.|+++|+++|++||+++|+|++++.+.....+ .+ +.|+++.|+||+|++|++ .|+++
T Consensus 149 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~---~~di~~~s~sK~~~~~g~~~~G~~~ 224 (398)
T 2rfv_A 149 ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPL-QL---GADIVVHSVTKYINGHGDVIGGIIV 224 (398)
T ss_dssp TEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGG-GG---TCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCch-hh---CCcEEEEeCcccccCCCCceEEEEE
Confidence 7999999999999999999999999999999999999999977654322 22 689999999999998876 59999
Q ss_pred Eeccc
Q 043646 311 ISKAL 315 (625)
Q Consensus 311 v~~~~ 315 (625)
+++++
T Consensus 225 ~~~~~ 229 (398)
T 2rfv_A 225 GKQEF 229 (398)
T ss_dssp ECHHH
T ss_pred ECHHH
Confidence 98876
No 97
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.94 E-value=1e-25 Score=243.47 Aligned_cols=362 Identities=10% Similarity=0.023 Sum_probs=234.3
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC-CCC-cEEEeCChHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG-QAD-AIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~-~~~-~vift~sGttaal 153 (625)
..++|+.+... +.++.+.+++.+.+... +.....|.......++.+++.+++++.+|.+ ..+ +|++| +|+++++
T Consensus 38 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~-~g~~~a~ 114 (429)
T 1yiz_A 38 KPLNLGQGFPDYHAPKYALNALAAAANSP--DPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVT-VGAYEAL 114 (429)
T ss_dssp CCEECCSSSCSSCCCHHHHHHHHHHHTCS--CGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEE-SHHHHHH
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHhcc--ccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEe-cChHHHH
Confidence 46777776554 45789999998887542 1111111111123456666667777667853 234 79998 7888889
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC----------CCCCHHHHHH
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN----------GLLDIEALRS 223 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~----------~~ld~~~L~~ 223 (625)
..++.++ +++||+ |++..+.|+++...++..|++++.+|.+.+ +.+|+++|++
T Consensus 115 ~~~~~~~---------------~~~gd~--Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 177 (429)
T 1yiz_A 115 YATIQGH---------------VDEGDE--VIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEA 177 (429)
T ss_dssp HHHHHHH---------------CCTTCE--EEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHH
T ss_pred HHHHHHh---------------cCCCCE--EEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHH
Confidence 9888877 467875 888889999988888889999999998763 4689999999
Q ss_pred HHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCC-CCCCcEEEEc
Q 043646 224 QLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRN-IDGYDAIFLA 295 (625)
Q Consensus 224 ~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~-~~~~D~v~~S 295 (625)
+++ +++++|++++++||||.+.| +++|+++|++||+++|+|++++.... ...+..+. ..+.|+++.|
T Consensus 178 ~l~-----~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s 252 (429)
T 1yiz_A 178 LFN-----EKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGS 252 (429)
T ss_dssp HCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEE
T ss_pred Hhc-----cCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEec
Confidence 986 57899999999999999985 89999999999999999999874221 11222111 1267899999
Q ss_pred CCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH--HHHHHHHHH-
Q 043646 296 THKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM--IRAALAFWV- 371 (625)
Q Consensus 296 ~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~--~~aal~~~~- 371 (625)
+||++|.|+ .+|++++++++.. .+.+. ......+.+.... +.+++...+
T Consensus 253 ~sK~~~~~G~r~G~~~~~~~~~~--~l~~~-------------------------~~~~~~~~~~~~~~a~~~~l~~~~~ 305 (429)
T 1yiz_A 253 AGKTFSLTGWKIGWAYGPEALLK--NLQMV-------------------------HQNCVYTCATPIQEAIAVGFETELK 305 (429)
T ss_dssp HHHHHTCGGGCCEEEESCHHHHH--HHHHH-------------------------HHTTTCCCCHHHHHHHHHHHHHHHT
T ss_pred chhccCCCCcceEEEEeCHHHHH--HHHHH-------------------------HhhcccCCChHHHHHHHHHHhcccc
Confidence 999987332 2899999877621 11100 0011122222222 122222200
Q ss_pred --Hh-hcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhh
Q 043646 372 --KE-YIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFN 448 (625)
Q Consensus 372 --~~-~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~ 448 (625)
.. ....+.++++.+.+++++.+.|.++ ++++..+. .+.+.+...+....... .. ......+..++++.|.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~----~g~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~~~l~ 378 (429)
T 1yiz_A 306 RLKSPECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQ----GGYFMVADWSSLDSKVD-LT-QETDARKDYRFTKWMT 378 (429)
T ss_dssp TTTSTTSHHHHHHHHHHHHHHHHHHHHHHH-TCEEEECS----BSSEEEEECCSSCTTTT-CC-SSSSSCHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCC----cceEEEEEccccccccc-cc-ccccCCCHHHHHHHHH
Confidence 00 2236677888888899999999876 77776542 34343333332100000 00 0000133567888776
Q ss_pred hhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 449 DLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 449 ~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
+++||.+++|..|..+... + ..++++||+++ ++++++++++++|+++++
T Consensus 379 ~~~gv~v~~g~~f~~~~~~---~-------------------~~~~~iRis~~--~~~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 379 KSVGLQGIPPSAFYSEPNK---H-------------------LGEDFVRYCFF--KKDENLQKAAEILRKWKG 427 (429)
T ss_dssp HHTSEECBCGGGGSCGGGG---G-------------------GTTTEEEEECC--SCHHHHHHHHHHHHHHSC
T ss_pred HhCCEEEeCchHhCCCccc---C-------------------CCCCeEEEEec--CCHHHHHHHHHHHHHhcc
Confidence 6689999988655422100 0 01489999998 489999999999988653
No 98
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.94 E-value=2.4e-25 Score=237.86 Aligned_cols=341 Identities=11% Similarity=0.057 Sum_probs=228.2
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCC-CCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTH-TSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTA 151 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~-~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGtta 151 (625)
+.++.|..+... ++++.+.+++.+.+... ++. ...|.......++.+++.+++.+.+|. +++ +|++| +|+++
T Consensus 35 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~-~i~~~-~g~~~ 110 (398)
T 3ele_A 35 ENVYDFSIGNPSIPAPQIVNDTIKELVTDY--DSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNAD-NLYMT-MGAAA 110 (398)
T ss_dssp GGCEECCSCCCCSCCCHHHHHHHHHHHHHS--CHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG-GEEEE-SSHHH
T ss_pred CCeEEeecCCCCCCCCHHHHHHHHHHHhcC--CccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChH-HEEEc-cCHHH
Confidence 345666655433 46788999988877431 111 001111122356677777777777774 444 89998 78888
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCC-CceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhh
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDE-ERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYK 229 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~ 229 (625)
++..++.++ +++| |+ |++..+.|+++...++..|++++.+|+++ ++.+|+++|+++++
T Consensus 111 al~~~~~~l---------------~~~g~d~--vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~--- 170 (398)
T 3ele_A 111 SLSICFRAL---------------TSDAYDE--FITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERIN--- 170 (398)
T ss_dssp HHHHHHHHH---------------CCSTTCE--EEEESSCCTHHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCC---
T ss_pred HHHHHHHHH---------------cCCCCCE--EEEeCCCchhhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhC---
Confidence 899988877 5788 85 88999999999888899999999999986 45899999999987
Q ss_pred hCCCCeEEEEecccCccccccC---HHHHHHHHHH------cCCEEEEeccCcCCCc-----cccCCCCCCCCCcEEEEc
Q 043646 230 AAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQ------YGGFACFDFAASGPYV-----KINLRSRNIDGYDAIFLA 295 (625)
Q Consensus 230 ~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~------~g~~vivD~A~~~g~~-----~id~~~~~~~~~D~v~~S 295 (625)
+++++|++++++||||.+.| +++|+++|++ ||+++|+|++++.... +..... .+.++++.|
T Consensus 171 --~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~---~~~~i~~~s 245 (398)
T 3ele_A 171 --AHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKY---YDNTLVCYS 245 (398)
T ss_dssp --TTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGT---CSSEEEEEE
T ss_pred --cCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhh---cCCeEEEEe
Confidence 57999999999999999988 6677789998 9999999999875321 111111 255788899
Q ss_pred CCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhh
Q 043646 296 THKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEY 374 (625)
Q Consensus 296 ~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~ 374 (625)
++|++|.| ..+|++++++++.. .. ... ..+..........+++.... .++...+ +.
T Consensus 246 ~sK~~~~~G~r~G~~~~~~~~~~--~~-~~~-----------------~~~~~~~~~~~~~~~~~~~~--~a~~~~l-~~ 302 (398)
T 3ele_A 246 YSKSLSLPGERIGYVLVPDEVYD--KA-ELY-----------------AAVCGAGRALGYVCAPSLFQ--KMIVKCQ-GA 302 (398)
T ss_dssp STTTSSCTTTCCEEEECCTTSTT--HH-HHH-----------------HHHHHHHHHTTCCCSCHHHH--HHHTTCT-TC
T ss_pred hhhcCCCccceeEEEEEcchhhh--HH-HHH-----------------HHHHHHhhhccccCCCHHHH--HHHHHHh-cC
Confidence 99999744 35899999887521 00 000 00000001111122222221 1111111 11
Q ss_pred cCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCee
Q 043646 375 IGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQ 454 (625)
Q Consensus 375 ~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~ 454 (625)
.. ..++.+.+++++.+.|.++ ++++..+. .+++.+...+. .+..++.+.|. ++||.
T Consensus 303 ~~---~~~~~~~~~~~l~~~L~~~-g~~~~~~~----~~~~~~~~~~~---------------~~~~~~~~~l~-~~gi~ 358 (398)
T 3ele_A 303 TG---DINAYKENRDLLYEGLTRI-GYHCFKPD----GAFYMFVKALE---------------DDSNAFCEKAK-EEDVL 358 (398)
T ss_dssp CC---CHHHHHHHHHHHHHHHHHH-TCCEECCS----BSSEEEEECSS---------------SCHHHHHHHHH-TTTEE
T ss_pred HH---HHHHHHHHHHHHHHHHHHc-CCeecCCC----eeEEEEEEcCC---------------CCHHHHHHHHH-HCCEE
Confidence 11 3455666677788887765 67776553 35544444332 13667888885 57999
Q ss_pred eecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 455 ARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 455 v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
+++|..|. .++++||+++ ++++++++++++|++++++.
T Consensus 359 v~~g~~~~-----------------------------~~~~iRis~~--~~~e~i~~~l~~l~~~l~~~ 396 (398)
T 3ele_A 359 IVAADGFG-----------------------------CPGWVRISYC--VDREMIKHSMPAFEKIYKKY 396 (398)
T ss_dssp CEESGGGT-----------------------------CTTEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred EeCccccC-----------------------------CCCeEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 99988765 2489999997 69999999999999988653
No 99
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.94 E-value=1.6e-25 Score=239.82 Aligned_cols=339 Identities=14% Similarity=0.168 Sum_probs=210.7
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQ 157 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (625)
..-.|+.+++...+.+.+++.. +.|+.. .+.+++......+++++.+++++|.+ + .++++ +|+ +++..++
T Consensus 28 ~~~p~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~r~~~~~~~~l~~~la~~~g~~-~-~i~~~-sG~-~a~~~~l 97 (398)
T 1gc0_A 28 LVPPVYQTATFTFPTVEYGAAC-----FAGEQA-GHFYSRISNPTLNLLEARMASLEGGE-A-GLALA-SGM-GAITSTL 97 (398)
T ss_dssp SSCCBCCCSCBCCC---------------------------CCHHHHHHHHHHHHHHTCS-E-EEEES-SHH-HHHHHHH
T ss_pred cCCCccCCCccccCCHHHHHHh-----hcCCcC-CCcccCCCChHHHHHHHHHHHHhCCC-c-EEEEC-CHH-HHHHHHH
Confidence 4456777777776666666531 344433 23344445577889999999999986 2 45554 785 7788877
Q ss_pred HHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH----HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCC
Q 043646 158 EVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~----~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~ 233 (625)
.++ +++||+ |+++...|+++...+ +..|++++.++.+ |+++|+++++ ++
T Consensus 98 ~~~---------------~~~gd~--vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~-----~~ 150 (398)
T 1gc0_A 98 WTL---------------LRPGDE--VLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA-----DLQALEAAMT-----PA 150 (398)
T ss_dssp HHH---------------CCTTCE--EEEESSCCSHHHHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCC-----TT
T ss_pred HHH---------------hcCCCE--EEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcC-----CC
Confidence 766 467875 999999999988777 4569999999864 8999999887 57
Q ss_pred CeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEE
Q 043646 234 PMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLI 311 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v 311 (625)
+++|++++++||||.+.|+++|+++|+++|+++|+|++++.+.....+. . ++|+++.|+||++++|++ .|++++
T Consensus 151 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~-~---~~d~~~~S~sK~~~~~~~~~~G~l~~ 226 (398)
T 1gc0_A 151 TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLE-L---GADLVVHSATKYLSGHGDITAGIVVG 226 (398)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGG-G---TCSEEEEETTTTTTCSSSCCCEEEEE
T ss_pred CeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccCCchh-h---CceEEEECCccccCCCCCCeEEEEEE
Confidence 9999999999999999999999999999999999999998765443332 2 789999999999998876 599998
Q ss_pred eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHH
Q 043646 312 SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIE 389 (625)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~ 389 (625)
+++... ..+.+.. .....++.+..... ..+++ ..+...++....++
T Consensus 227 ~~~~~~-~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~ 274 (398)
T 1gc0_A 227 SQALVD-RIRLQGL------------------------KDMTGAVLSPHDAALLMRGIK-------TLNLRMDRHCANAQ 274 (398)
T ss_dssp CHHHHH-HHHHTHH------------------------HHHTCCCCCHHHHHHHHHHHT-------THHHHHHHHHHHHH
T ss_pred ChHHHH-HHHHHHh------------------------hccCCCCCCHHHHHHHHhccc-------hHHHHHHHHHHHHH
Confidence 877521 0111110 11012333333221 12222 12333444455566
Q ss_pred HHHHhhCCCCcE--------------EEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeee
Q 043646 390 SALGRILPNQNI--------------QVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQA 455 (625)
Q Consensus 390 ~l~~~L~~l~gv--------------~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v 455 (625)
++.+.|.+++.+ +++.+.....+++++|.+... ...+.+.+ ++.+|.+
T Consensus 275 ~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------------~~~~~~~l-~~~~i~~ 336 (398)
T 1gc0_A 275 VLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG-----------------IGAGRRFM-NALQLFS 336 (398)
T ss_dssp HHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTH-----------------HHHHHHHH-HHCSSSE
T ss_pred HHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCC-----------------HHHHHHHH-HhCCCce
Confidence 666666655443 333321123567888866321 22455555 5578887
Q ss_pred ec---CCC------CCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 456 RG---GCA------CAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 456 ~~---G~~------~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
+. |.. |... .| ..+...... ..|+.++++|||++..+++++++.+.++|+++
T Consensus 337 ~~~s~G~~~sl~~~~~~~-~~--~~~~~~~~~---------~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 337 RAVSLGDAESLAQHPASM-TH--SSYTPEERA---------HYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp ECSCCSCSSCEEECGGGT-TT--SSSCHHHHH---------HTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred eccCCCCcceeeeccccc-cc--ccCCHHHHH---------hcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 65 422 2210 00 011110000 12445699999999999999999999999865
No 100
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.94 E-value=2.2e-25 Score=236.43 Aligned_cols=338 Identities=12% Similarity=0.025 Sum_probs=224.9
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC-C-CCcEEEeCChHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG-Q-ADAIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~-~-~~~vift~sGttaal 153 (625)
..+.|..+... ..++.+.+++.+.+.. +....|.......++.+.+.+++++.+|.+ . +++|++| +|+++++
T Consensus 26 ~~idl~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~-~g~~~a~ 100 (376)
T 2dou_A 26 GLIDLSIGSTDLPPPEAPLKALAEALND----PTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALAL-IGSQEGL 100 (376)
T ss_dssp CCEECSSCCCCCCCCHHHHHHHHHHTTC----GGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEE-SSHHHHH
T ss_pred CEEeccCCCCCCCCCHHHHHHHHHHHhC----CCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEc-CCcHHHH
Confidence 34555554433 2467899999887743 111112221233444444555555555886 2 2279998 7888889
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCC
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~ 233 (625)
..++.++ +++||+ |++..+.|+++...++..|++++.+|++.+..+|+++|+++++ ++
T Consensus 101 ~~~~~~l---------------~~~gd~--vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~-----~~ 158 (376)
T 2dou_A 101 AHLLLAL---------------TEPEDL--LLLPEVAYPSYFGAARVASLRTFLIPLREDGLADLKAVPEGVW-----RE 158 (376)
T ss_dssp HHHHHHH---------------CCTTCE--EEEESSCCHHHHHHHHHTTCEEEEECBCTTSSBCGGGSCHHHH-----HH
T ss_pred HHHHHHh---------------cCCCCE--EEECCCCcHhHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHhhc-----cC
Confidence 8888877 467875 8889999999988888899999999984344689999999987 36
Q ss_pred CeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc---cccCCCC-CCCCCcEEEEcCCCCCCCCC-C
Q 043646 234 PMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---KINLRSR-NIDGYDAIFLATHKFLGGPG-T 305 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~---~id~~~~-~~~~~D~v~~S~hK~lggp~-g 305 (625)
+++|++++++||||.+.| +++|+++|++||+++|+|++++.... +.++... ...+.++++.|++|++|.|+ .
T Consensus 159 ~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 238 (376)
T 2dou_A 159 AKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFR 238 (376)
T ss_dssp EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGC
T ss_pred ceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhhe
Confidence 899999999999999987 67889999999999999999875321 1121111 11145788899999997443 4
Q ss_pred ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh-hcCHHHHHHHH
Q 043646 306 PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE-YIGYEVIKKQE 384 (625)
Q Consensus 306 ~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~-~~g~~~i~~~~ 384 (625)
+|++++++++.. .+... ......++ +..... ++.+.+ .. ....+.+.++.
T Consensus 239 ~G~~~~~~~~~~--~l~~~------------------------~~~~~~~~-~~~~~~-a~~~~l-~~~~~~~~~~~~~~ 289 (376)
T 2dou_A 239 LGFALGSEEALA--RLERV------------------------KGVIDFNQ-YAGVLR-MGVEAL-KTPKEVVRGYARVY 289 (376)
T ss_dssp CEEEEECHHHHH--HHHHH------------------------HHHHCCCS-CHHHHH-HHHHHH-TSCHHHHHHHHHHH
T ss_pred eEEEecCHHHHH--HHHHH------------------------HHhcccCC-CHHHHH-HHHHHH-hCcHHHHHHHHHHH
Confidence 799998877622 11100 01111222 322221 222222 11 12355667778
Q ss_pred HHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCch
Q 043646 385 DVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464 (625)
Q Consensus 385 ~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~ 464 (625)
+.+++++.+.|.++ +++..+ ..+.+.+...+. +++..++.+.|.++ ||.+++|..|+..
T Consensus 290 ~~~~~~l~~~L~~~--~~~~~~----~~~~~~~~~~~~--------------~~~~~~~~~~l~~~-gi~v~~g~~f~~~ 348 (376)
T 2dou_A 290 RERALGMAEALKGV--LSLLPP----RATMYLWGRLPE--------------GVDDLEFGLRLVER-GVALAPGRGFGPG 348 (376)
T ss_dssp HHHHHHHHHHHTTT--SEECCC----CBSSEEEEECCT--------------TCCHHHHHHHHHHT-TEECEEGGGGCGG
T ss_pred HHHHHHHHHHHHHh--cCccCC----CeeEEEEEECCC--------------CCCHHHHHHHHHHC-CEEEcCchhhCCC
Confidence 88899999999886 666544 235544444332 23456788888765 9999988776411
Q ss_pred hhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 465 YGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.++++||+++. ++++++.+++.|++++
T Consensus 349 ---------------------------~~~~~Ris~~~--~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 349 ---------------------------GKGFVRIALVR--PLEELLEAAKRIREAL 375 (376)
T ss_dssp ---------------------------GTTEEEEECCS--CHHHHHHHHHHHHHTC
T ss_pred ---------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence 14899999974 8899999999998653
No 101
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.94 E-value=1.8e-24 Score=228.98 Aligned_cols=328 Identities=12% Similarity=0.029 Sum_probs=223.0
Q ss_pred EeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHH
Q 043646 79 TYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 79 ~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaal~~ 155 (625)
++|+.+... +.++.+.+++.+.+.......+ .|..... .++.+.+.+++++.+|. +++ +|++| +|+++++..
T Consensus 33 idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~--~y~~~~~-~~l~~~la~~l~~~~g~~~~~~-~v~~~-~G~~~al~~ 107 (369)
T 3cq5_A 33 IRLNTNENPYPPSEALVADLVATVDKIATELN--RYPERDA-VELRDELAAYITKQTGVAVTRD-NLWAA-NGSNEILQQ 107 (369)
T ss_dssp EECSSCCCCSCCCHHHHHHHHHHHHHHGGGTT--SCCCTTC-HHHHHHHHHHHHHHHCCCCCGG-GEEEE-SHHHHHHHH
T ss_pred eeccCCCCCCCCCHHHHHHHHHHHHhcccccc--cCCCccH-HHHHHHHHHhhhhcccCCCChH-hEEEC-CChHHHHHH
Confidence 566655442 4667899998887743100000 1111111 24444455555555444 444 89998 899999998
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCe
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPM 235 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~ 235 (625)
++.++ +++||+ |+++.++|+++...++..|++++.++.+.++.+|+++|++++++ .+++
T Consensus 108 ~~~~l---------------~~~gd~--Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----~~~~ 166 (369)
T 3cq5_A 108 LLQAF---------------GGPGRT--ALGFQPSYSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRA----KQPD 166 (369)
T ss_dssp HHHHH---------------CSTTCE--EEEEESSCTHHHHHHHHTTCEEEEEECCTTSSCCHHHHHHHHHH----HCCS
T ss_pred HHHHh---------------cCCCCE--EEEcCCChHHHHHHHHHcCCEEEEecCCcCCCCCHHHHHHHhhc----cCCC
Confidence 88877 467875 89999999999888888999999999887778999999999983 2689
Q ss_pred EEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCC-CCCC-CcEEEEcCCCCCCCCC-CceEEEEe
Q 043646 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSR-NIDG-YDAIFLATHKFLGGPG-TPGILLIS 312 (625)
Q Consensus 236 lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~-~~~~-~D~v~~S~hK~lggp~-g~G~l~v~ 312 (625)
+|++++++||||.+.|+++|.++++.+++++|+|++++.+....++... ...+ .++++.|+||++|.|+ .+|+++++
T Consensus 167 ~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 246 (369)
T 3cq5_A 167 IVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVAN 246 (369)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEEC
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeC
Confidence 9999999999999999999999999999999999998865432221111 1113 5688999999997443 37999999
Q ss_pred ccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 043646 313 KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESAL 392 (625)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~ 392 (625)
+++.. .+.+.. ...+++..... ++.+.+ ......+.+.++.+.+++++.
T Consensus 247 ~~~~~--~l~~~~---------------------------~~~~~~~~~~~-a~~~~l-~~~~~~~~~~~~~~~~~~~l~ 295 (369)
T 3cq5_A 247 PAFID--AVMLVR---------------------------LPYHLSALSQA-AAIVAL-RHSADTLGTVEKLSVERVRVA 295 (369)
T ss_dssp THHHH--HHHTTS---------------------------CTTCSCHHHHH-HHHHHH-HTHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHcC---------------------------CCCCCCHHHHH-HHHHHh-cCHHHHHHHHHHHHHHHHHHH
Confidence 87632 111100 00122322221 112222 122234566777888888898
Q ss_pred HhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcC
Q 043646 393 GRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAF 472 (625)
Q Consensus 393 ~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~ 472 (625)
+.|.+. ++++..+ .+.++.+.+ + .+..++.+.|. ++||.+++| +
T Consensus 296 ~~L~~~-g~~~~~~----~~~~~~~~~-~----------------~~~~~l~~~l~-~~gi~v~~~---~---------- 339 (369)
T 3cq5_A 296 ARLEEL-GYAVVPS----ESNFVFFGD-F----------------SDQHAAWQAFL-DRGVLIRDV---G---------- 339 (369)
T ss_dssp HHHHHH-TCEEECC----SSSEEEEEC-C----------------SSHHHHHHHHH-HTTEECBCC---S----------
T ss_pred HHHHhC-CCEECCC----CCeEEEEEC-C----------------CCHHHHHHHHH-HCCEEEEEC---C----------
Confidence 888774 7777633 234444433 2 12567888885 589999876 1
Q ss_pred ChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 473 DQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 473 ~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.++++||+++ +++|+++++++|++++.
T Consensus 340 -------------------~~~~iRis~~---~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 340 -------------------IAGHLRTTIG---VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp -------------------CTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred -------------------CCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 1378999998 89999999999998764
No 102
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.94 E-value=3.1e-26 Score=238.66 Aligned_cols=299 Identities=11% Similarity=0.045 Sum_probs=197.7
Q ss_pred HHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH----H
Q 043646 125 EASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR----Q 200 (625)
Q Consensus 125 ~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~----~ 200 (625)
++++.+++++|++ + .++++ +| ++++..++.++ +++||+ |+++.++|+++...++ .
T Consensus 2 ~l~~~la~~~g~~-~-~i~~~-sG-~~a~~~~~~~~---------------~~~g~~--v~~~~~~~~~~~~~~~~~~~~ 60 (331)
T 1pff_A 2 ALEGKIAKLEHAE-A-CAATA-SG-MGAIAASVWTF---------------LKAGDH--LISDDCLYGCTHALFEHQLRK 60 (331)
T ss_dssp HHHHHHHHHHTCS-E-EEEES-SH-HHHHHHHHHHH---------------CCTTCE--EEEESCCCHHHHHHHHTHHHH
T ss_pred hHHHHHHHHhCCC-e-EEEeC-Ch-HHHHHHHHHHh---------------cCCCCE--EEEcCCCcchHHHHHHHHHHh
Confidence 5789999999986 3 56665 78 57788887766 467875 9999999999877763 4
Q ss_pred cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHH-cCCEEEEeccCcCCCccc
Q 043646 201 SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQ-YGGFACFDFAASGPYVKI 279 (625)
Q Consensus 201 ~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~-~g~~vivD~A~~~g~~~i 279 (625)
.|++++.++. .|+++|+++++ +++++|++++++||||.+.|+++|.++|++ +|+++++|++++.+....
T Consensus 61 ~g~~~~~~~~-----~d~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~ 130 (331)
T 1pff_A 61 FGVEVDFIDM-----AVPGNIEKHLK-----PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTN 130 (331)
T ss_dssp TTCEEEEECT-----TSTTHHHHTCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCC
T ss_pred cCCEEEEeCC-----CCHHHHHHhhc-----CCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCC
Confidence 7999999986 37888988887 579999999999999999999999999999 999999999998776543
Q ss_pred cCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEec-cccccCCCCCcccC-CceEEeeccccccccccccchhhhhcCC
Q 043646 280 NLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISK-ALYQLGSSPPSTCG-GGTVNYVNAFDEKDTLYLEDIEERENGG 355 (625)
Q Consensus 280 d~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~-~~~~l~~~~p~~~g-gg~v~~~~~~~~~~~~~~~~~~~~~~~g 355 (625)
++ .. +.|++++|+||+|++|++ .|++++++ ++. +.+.+...+ ++ +
T Consensus 131 ~~-~~---~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~--~~l~~~~~~~~~-------------------------~ 179 (331)
T 1pff_A 131 PL-DL---GVDIVVHSATKYINGHTDVVAGLVCSRADIIA--KVKSQGIKDITG-------------------------A 179 (331)
T ss_dssp GG-GG---TCSEEEEETTTTTSSSSSCCCEEEEECHHHHH--HHHHTCCCCCCC-------------------------C
T ss_pred hh-hc---CCcEEEEECccccCCCCCceEEEEEeCcHHHH--HHHHHHHHhhcC-------------------------C
Confidence 34 23 789999999999999887 79999988 662 222222211 11 1
Q ss_pred ChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHH----------hhCCCCcEEEeCCCCCCCcceEEEEeccCC
Q 043646 356 TPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALG----------RILPNQNIQVLGNTSVKRQAILSFLVYSTT 423 (625)
Q Consensus 356 t~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~----------~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~ 423 (625)
+.+..... ..++... ....+...+....+.+++.+ .|.++|+++++.+....++++++|.+.
T Consensus 180 ~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--- 253 (331)
T 1pff_A 180 IISPHDAWLITRGTLTL---DMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD--- 253 (331)
T ss_dssp CCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS---
T ss_pred CCCHHHHHHHHcCcchH---HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC---
Confidence 22222211 1223221 00122223333333333332 233334454443322235677777663
Q ss_pred CCCCccccccCCCCCChHHHHHHhhhhcCeeeecC---------CCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCc
Q 043646 424 NSSPENMKIERNKPLHGPFVATLFNDLFGIQARGG---------CACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPG 494 (625)
Q Consensus 424 ~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g 494 (625)
+..++.+.| +++||.++.. ++|..+. + ..+...... ..|+.++
T Consensus 254 ---------------~~~~~~~~l-~~~gI~~~~~s~g~~~sl~~~~~~~~-~--~~~~~~~~~---------~~g~~~~ 305 (331)
T 1pff_A 254 ---------------GLEKAKKVL-DNCHVVSLAVSLGGPESLIQHPASMT-H--AGVPKEERE---------AAGLTDN 305 (331)
T ss_dssp ---------------SHHHHHHHH-HTCSSSEECSSCCSSSCEEECHHHHT-S--TTSCHHHHH---------HTTCCTT
T ss_pred ---------------CHHHHHHHH-HhCCCceeccCCCCcceeeecchhhc-c--cccCHHHHH---------hcCCCCC
Confidence 145677777 4589988765 3443221 1 001100000 1234468
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 495 WTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 495 ~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
++|||++.+++++++++++++|+++
T Consensus 306 ~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 306 LIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp EEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999753
No 103
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.94 E-value=8.1e-25 Score=231.14 Aligned_cols=324 Identities=14% Similarity=0.009 Sum_probs=220.8
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
..++|+.+... ..++.+.+++.+.+......+. ....++++.+++++|++++ +|++| +|+++++..
T Consensus 25 ~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~~-----------~~~~~l~~~la~~~~~~~~-~v~~~-~g~~~al~~ 91 (364)
T 1lc5_A 25 QLLDFSANINPLGMPVSVKRALIDNLDCIERYPD-----------ADYFHLHQALARHHQVPAS-WILAG-NGETESIFT 91 (364)
T ss_dssp GSEECSSCCCTTCCCHHHHHHHHHTGGGGGSCCC-----------TTCHHHHHHHHHHHTSCGG-GEEEE-SSHHHHHHH
T ss_pred ceEEeccccCCCCCCHHHHHHHHHHHHHhhcCCC-----------CCHHHHHHHHHHHHCcCHH-HEEEC-CCHHHHHHH
Confidence 45666655432 3568899999887643111111 1246688999999998766 89998 788888988
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCC-HHHHHHHHHHhhhCCCC
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLD-IEALRSQLELYKAAKRP 234 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld-~~~L~~~l~~~~~~~~~ 234 (625)
++.++ +||+ |++..+.|+++...++..|++++.++.+....++ ++++.+.++ +++
T Consensus 92 ~~~~~-----------------~gd~--vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~-----~~~ 147 (364)
T 1lc5_A 92 VASGL-----------------KPRR--AMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLTDAILEALT-----PDL 147 (364)
T ss_dssp HHHHH-----------------CCSE--EEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCTTHHHHCC-----TTC
T ss_pred HHHHc-----------------CCCe--EEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccchhHHHHHhcc-----CCC
Confidence 87754 4554 8888889999988888899999999987522234 344444443 578
Q ss_pred eEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCCCCCCcEEEEcCCCCCCCCC-Cc
Q 043646 235 MLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRNIDGYDAIFLATHKFLGGPG-TP 306 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~~~~~D~v~~S~hK~lggp~-g~ 306 (625)
++|++++++||||.+.| +++|+++|++||+++|+|++++.... .++. ....+.|+++.|+||++|.|+ .+
T Consensus 148 ~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~--~~~~~~~i~~~s~sK~~~~~G~r~ 225 (364)
T 1lc5_A 148 DCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPA--LKDNPHIWVLRSLTKFYAIPGLRL 225 (364)
T ss_dssp CEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGG--CTTCTTEEEEEESTTTTTCTTTCC
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhH--hccCCCEEEEEECchhhcCCccce
Confidence 99999999999999998 89999999999999999999875332 1221 111256888999999997554 37
Q ss_pred eEEE-EeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 043646 307 GILL-ISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQED 385 (625)
Q Consensus 307 G~l~-v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~ 385 (625)
|+++ .++++.. .+.+. ....+++..... ++.+++ ......+.+.++.+
T Consensus 226 G~~~~~~~~~~~--~l~~~---------------------------~~~~~~~~~~~~-~~~~~l-~~~~~~~~~~~~~~ 274 (364)
T 1lc5_A 226 GYLVNSDDAAMA--RMRRQ---------------------------QMPWSVNALAAL-AGEVAL-QDSAWQQATWHWLR 274 (364)
T ss_dssp EEEECCCHHHHH--HHHHH---------------------------SCTTCSCHHHHH-HHHHGG-GCHHHHHHHHHHHH
T ss_pred EEEEECCHHHHH--HHHHh---------------------------CCCCCCCHHHHH-HHHHHH-hCcHHHHHHHHHHH
Confidence 9999 7777621 11100 011223333322 122222 12223566777788
Q ss_pred HHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh
Q 043646 386 VYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY 465 (625)
Q Consensus 386 ~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~ 465 (625)
.+++++.+.|.++|++++..+ .+.++.+.+ +.. ..++.+.|.+ +||.+++|..|...
T Consensus 275 ~~~~~l~~~L~~~~~~~~~~~----~g~~~~~~~-~~~----------------~~~l~~~l~~-~gi~v~~g~~~~~~- 331 (364)
T 1lc5_A 275 EEGARFYQALCQLPLLTVYPG----RANYLLLRC-ERE----------------DIDLQRRLLT-QRILIRSCANYPGL- 331 (364)
T ss_dssp HHHHHHHHHHHTSTTEEECCC----SSSEEEEEE-SCT----------------TCCHHHHHHT-TTEECEECTTSTTC-
T ss_pred HHHHHHHHHHhcCCCCEECCC----CCeEEEEEC-CCc----------------HHHHHHHHHH-CCcEEeeCcccCCC-
Confidence 889999999998889987643 344544433 211 2357777865 69999998776410
Q ss_pred hHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 466 GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 466 ~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.++++||+++ +.+|+++++++|+++++.
T Consensus 332 --------------------------~~~~iRis~~---~~~~~~~l~~~l~~~~~~ 359 (364)
T 1lc5_A 332 --------------------------DSRYYRVAIR---SAAQNERLLAALRNVLTG 359 (364)
T ss_dssp --------------------------CTTEEEEECC---CHHHHHHHHHHHHHHC--
T ss_pred --------------------------CCCEEEEEeC---CHHHHHHHHHHHHHHhhc
Confidence 2489999986 789999999999988654
No 104
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.94 E-value=9e-25 Score=233.62 Aligned_cols=364 Identities=13% Similarity=0.019 Sum_probs=232.7
Q ss_pred hHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhh
Q 043646 90 LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMR 169 (625)
Q Consensus 90 p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~ 169 (625)
++.+.+++.+.+...|.++ .+ ....++++.+++++|. + +++++ +|+++++..++.+++
T Consensus 11 ~~~v~~a~~~~~~~~~~~~------~g----~~~~~l~~~la~~~~~--~-~v~~~-~ggt~al~~~~~~l~-------- 68 (394)
T 1o69_A 11 GGNELKYIEEVFKSNYIAP------LG----EFVNRFEQSVKDYSKS--E-NALAL-NSATAALHLALRVAG-------- 68 (394)
T ss_dssp -CCHHHHHHHHHHHTTTSC------TT----HHHHHHHHHHHHHHCC--S-EEEEE-SCHHHHHHHHHHHTT--------
T ss_pred CHHHHHHHHHHHHcCCccC------CC----hHHHHHHHHHHHHhCC--C-cEEEe-CCHHHHHHHHHHHcC--------
Confidence 3467777777664322221 11 3567899999999997 3 78998 677788888888763
Q ss_pred hhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccc
Q 043646 170 DKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIY 249 (625)
Q Consensus 170 ~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~ 249 (625)
+++||+ |+++.++|+++...++..|++++.++++.++.+|+++|++++++. .+++++|++++ +||..
T Consensus 69 ------~~~gd~--Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~--~~~~~~v~~~~---~~G~~ 135 (394)
T 1o69_A 69 ------VKQDDI--VLASSFTFIASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIKEC--EKKPKALILTH---LYGNA 135 (394)
T ss_dssp ------CCTTCE--EEEESSSCGGGTHHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHC--SSCCCEEEEEC---GGGCC
T ss_pred ------CCCCCE--EEECCCccHHHHHHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcc--cCCceEEEEEC---CCCCh
Confidence 467885 999999999999999999999999999877889999999999841 11689999885 89999
Q ss_pred cCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEe-ccccccCCCCCcccCC
Q 043646 250 SDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLIS-KALYQLGSSPPSTCGG 328 (625)
Q Consensus 250 ~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~-~~~~~l~~~~p~~~gg 328 (625)
.|+++|.++|+++|+++|+|++++.|....+.......++|++++|.||+++ |.++|+++++ +++. +.+.+...++
T Consensus 136 ~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~--~~l~~~~~~~ 212 (394)
T 1o69_A 136 AKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIIT-TSGGGMLIGKNKEKI--EKARFYSTQA 212 (394)
T ss_dssp CCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSC-CSSCEEEEESCHHHH--HHHHHHTBTC
T ss_pred hhHHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCC-CCCceEEEECCHHHH--HHHHHHHHhc
Confidence 9999999999999999999999997665433221111257888899999987 5568999996 5652 1221111111
Q ss_pred ceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCC
Q 043646 329 GTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTS 408 (625)
Q Consensus 329 g~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~ 408 (625)
.. . ...+...+.++..+++++.+.+..+ . ...++.+.++.+.+++++.+.|.++ ++++.+..
T Consensus 213 ~~--~--------~~~~~~~~~g~~~~~~~~~aa~~l~--~----l~~l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~ 274 (394)
T 1o69_A 213 RE--N--------CLHYEHLDYGYNYRLSNVLGAIGVA--Q----MEVLEQRVLKKREIYEWYKEFLGEY--FSFLDELE 274 (394)
T ss_dssp CC--S--------SSSCCCSSCCCBCBCCHHHHHHHHH--H----HTTHHHHHHHHHHHHHHHHHHHTTT--EECCCCCT
T ss_pred cc--c--------CccccccccCcccCcCHHHHHHHHH--H----HHHHHHHHHHHHHHHHHHHHHhccc--ccccCCCC
Confidence 00 0 0001112334556677776654322 1 1124556788888999999999887 66665421
Q ss_pred CCCcc--eEEEEeccCC-----CCCCccc-cccCCCCCChHHHHHHhhhhcCeeeecCCCCCc--hhhHhhh--cCChhh
Q 043646 409 VKRQA--ILSFLVYSTT-----NSSPENM-KIERNKPLHGPFVATLFNDLFGIQARGGCACAG--PYGHTLL--AFDQTR 476 (625)
Q Consensus 409 ~~~~~--i~~f~~~~~~-----~~~~~~~-~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~--~~~~~~l--~~~~~~ 476 (625)
..+.. ++.+.+.... ....... ......+++..++.+.|.+ +||.+++|..|.. |....+. ++. .
T Consensus 275 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~p~~~~~~~~~~~--~ 351 (394)
T 1o69_A 275 NSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKN-KQIETRPLWKAMHTQEVFKGAKAYLNG--N 351 (394)
T ss_dssp TEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHH-TTCCCBCCCCCGGGCGGGTTCEEEECS--H
T ss_pred CCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHH-cCCcccccCCccccchhhhccCCCCCh--H
Confidence 11112 4555543210 0000000 0000012346678888855 7999999966521 2111000 010 1
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 477 SLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 477 ~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
+.++ ....+|++.+.++|++|+++++++|++++..+
T Consensus 352 ~~~~-----------~~~~~~~~~~~~~t~edi~~~~~~l~~~~~~~ 387 (394)
T 1o69_A 352 SELF-----------FQKGICLPSGTAMSKDDVYEISKLILKSIKAG 387 (394)
T ss_dssp HHHH-----------HHHEEEECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred HHHH-----------hcCeEEccCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 1100 01456777799999999999999999887654
No 105
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.94 E-value=8.2e-26 Score=242.55 Aligned_cols=343 Identities=11% Similarity=0.014 Sum_probs=229.7
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~~vift~sGttaal 153 (625)
..+.|+.+... ..++.+.+++.+.+... ....|.......++.+.+.+++++.+|.+ ++++|++| +|+++++
T Consensus 48 ~~idl~~g~~~~~~~~~v~~a~~~~~~~~----~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t-~G~~~al 122 (404)
T 2o1b_A 48 PLINMAVGIPDGPTPQGIIDHFQKALTIP----ENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCIL-YGTKNGL 122 (404)
T ss_dssp CCEECCCCSCSSCCCHHHHHHHHHHTTCH----HHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEE-SSHHHHH
T ss_pred CEEecCCcCCCCCCCHHHHHHHHHHHhCC----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEc-CCcHHHH
Confidence 35666655443 24678999988876421 00011111122344555555555555975 22389998 7888889
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCC-CCCHHHHHHHHHHhhhCC
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNG-LLDIEALRSQLELYKAAK 232 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~-~ld~~~L~~~l~~~~~~~ 232 (625)
..++.++ +++||+ |++..+.|+++...++..|++++.++.+.++ .+|+++|+++++ +
T Consensus 123 ~~~~~~l---------------~~~gd~--Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~-----~ 180 (404)
T 2o1b_A 123 VAVPTCV---------------INPGDY--VLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQII-----D 180 (404)
T ss_dssp HHHHHHH---------------CCTTCE--EEEEESCCSSHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHH-----H
T ss_pred HHHHHHh---------------cCCCCE--EEEcCCCchhHHHHHHHCCCEEEEeccCcccCcCCHHHHHHhhc-----c
Confidence 9888877 467875 8888899999988888899999999988633 589999999987 3
Q ss_pred CCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc---cccCCCCC-CCCCcEEEEcCCCCCCCCC-
Q 043646 233 RPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---KINLRSRN-IDGYDAIFLATHKFLGGPG- 304 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~---~id~~~~~-~~~~D~v~~S~hK~lggp~- 304 (625)
++++|++++++||||.+.| +++|+++|+++|+++|+|++++.... +.++..+. ..+.|+++.|+||+||.|+
T Consensus 181 ~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~ 260 (404)
T 2o1b_A 181 KTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGF 260 (404)
T ss_dssp HEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGG
T ss_pred CceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchh
Confidence 6899999999999999986 67899999999999999999886432 22222221 0135788999999997453
Q ss_pred CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHH
Q 043646 305 TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQE 384 (625)
Q Consensus 305 g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~ 384 (625)
.+|++++++++.. .+.+ ......++++..... ++.+++.......+.+.++.
T Consensus 261 r~G~~~~~~~~~~--~l~~-------------------------~~~~~~~~~~~~~~~-a~~~~l~~~~~~~~~~~~~~ 312 (404)
T 2o1b_A 261 RVGFAVGNKDMIQ--ALKK-------------------------YQTHTNAGMFGALQD-AAIYALNHYDDFLEEQSNVF 312 (404)
T ss_dssp CCEEEEECHHHHH--HHHH-------------------------HHHHHCCCCCHHHHH-HHHHHHHHCHHHHHHHHHHH
T ss_pred heEeEecCHHHHH--HHHH-------------------------HHhhccCCCCHHHHH-HHHHHHhcCHHHHHHHHHHH
Confidence 4799998877621 1110 001111233333222 22222211122356677778
Q ss_pred HHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCch
Q 043646 385 DVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464 (625)
Q Consensus 385 ~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~ 464 (625)
+.+++++.+.|.++ ++++..+ ..+++.+...+. +++..++.+.|.+++||.+++|..|+..
T Consensus 313 ~~~~~~l~~~L~~~-g~~~~~~----~~g~~~~~~~~~--------------~~~~~~l~~~l~~~~gi~v~~g~~f~~~ 373 (404)
T 2o1b_A 313 KTRRDRFEAMLAKA-DLPFVHA----KGGIYVWLETPP--------------GYDSEQFEQFLVQEKSILVAPGKPFGEN 373 (404)
T ss_dssp HHHHHHHHHHHHHT-TCCEECC----CBSSEEEEECCT--------------TCCHHHHHHHHHHHHCEECEESGGGCGG
T ss_pred HHHHHHHHHHHHhc-CCeecCC----CcceEEEEeCCC--------------CCCHHHHHHHHHHHCCEEEeCchhhCcC
Confidence 88889999999877 7777654 235544443331 2345678888766689999998776411
Q ss_pred hhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 465 YGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.++++||+++. ++++++.+++.|++++++
T Consensus 374 ---------------------------~~~~iRis~~~--~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 374 ---------------------------GNRYVRISLAL--DDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp ---------------------------GTTEEEEECCS--CTTHHHHHHHHHHGGGGG
T ss_pred ---------------------------CCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 14899999985 788999999999876543
No 106
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.94 E-value=9.6e-26 Score=238.84 Aligned_cols=353 Identities=12% Similarity=0.033 Sum_probs=228.8
Q ss_pred eccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHH
Q 043646 80 YADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEV 159 (625)
Q Consensus 80 Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~ 159 (625)
++|.+...+....+.+++.+.+... .+. ......++++.+++++|.+ +++++++|+ +++..++.+
T Consensus 8 ~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~l~~~la~~~~~~---~~~~~~~gt-~a~~~~~~~ 72 (374)
T 3uwc_A 8 YSYLERQFADIEPYLNDLREFIKTA-------DFT----LGAELEKFEKRFAALHNAP---HAIGVGTGT-DALAMSFKM 72 (374)
T ss_dssp SCCHHHHTSSCHHHHHHHHHHHHHT-------CCS----SCHHHHHHHHHHHHHTTCS---EEEEESCHH-HHHHHHHHH
T ss_pred eeccccCCCCchHHHHHHHHHHHcC-------Ccc----cChhHHHHHHHHHHHhCCC---cEEEeCCHH-HHHHHHHHH
Confidence 3444333443333778877766321 011 1234677999999999986 578886665 557777776
Q ss_pred hcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEE
Q 043646 160 MGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSF 239 (625)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~ 239 (625)
++ +++||+ |+++.++|+++...++..|++++.++++.++.+|+++|+++++ +++++|+
T Consensus 73 ~~--------------~~~gd~--v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~-----~~~~~v~- 130 (374)
T 3uwc_A 73 LN--------------IGAGDE--VITCANTFIASVGAIVQAGATPVLVDSENGYVIDPEKIEAAIT-----DKTKAIM- 130 (374)
T ss_dssp TT--------------CCTTCE--EEEESSSCHHHHHHHHHTTCEEEEECBCTTSSBCGGGTGGGCC-----TTEEEEC-
T ss_pred cC--------------CCCCCE--EEECCCccHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHhCC-----CCceEEE-
Confidence 53 467885 9999999999998999999999999998778899999999887 4678776
Q ss_pred ecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCC--CCCCCCCCceEEEEeccccc
Q 043646 240 SACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATH--KFLGGPGTPGILLISKALYQ 317 (625)
Q Consensus 240 ~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~h--K~lggp~g~G~l~v~~~~~~ 317 (625)
++||||.+.|+++|.++|++||+++|+|++++.+.. ++...... ..|++++|+| |++++++..|+++.++...
T Consensus 131 --~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~-~~~~~~~~-~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~- 205 (374)
T 3uwc_A 131 --PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGR-INDKFVGS-WGQFACFSLHPLKNLNVWSDAGVIITHSDEY- 205 (374)
T ss_dssp --CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCE-ETTEETTS-SSSEEEEECSSSSSSCCSSCCEEEEESCHHH-
T ss_pred --EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCce-eCCeeccc-cccEEEEeCCCCCcCCccceeEEEEeCCHHH-
Confidence 789999999999999999999999999999998754 33333311 3699999988 9998645467877766431
Q ss_pred cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC
Q 043646 318 LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP 397 (625)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~ 397 (625)
.+.+.+...++....+. . ...+.......+.+++.+. ...+.+.+.++.+.+++++.+.|.+
T Consensus 206 ~~~~~~~~~~~~~~~~~---------------~-~~~~~~~~~~~~~aa~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~ 267 (374)
T 3uwc_A 206 AEKLRLYRNHGLINRDV---------------C-VEYGINCRMDTIQAVIANR--LMNQLETITEKRRGIAHLYDQSFVD 267 (374)
T ss_dssp HHHHHHHTBTTEEETTE---------------E-SSCCCBCBCCHHHHHHHHH--HGGGHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHhcCccccCc---------------c-ccccccCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11122222222110000 0 0001110011112233332 3345677888889999999999999
Q ss_pred CCc-EEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCC----CCchhhHhhhcC
Q 043646 398 NQN-IQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCA----CAGPYGHTLLAF 472 (625)
Q Consensus 398 l~g-v~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~----~~~~~~~~~l~~ 472 (625)
+++ +++...........+.|.+... +..++.+.|.+ +||.+++|.. |...+.. ++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~l~~~L~~-~gi~v~~~~~~~~~~~~~~~~--~~~ 328 (374)
T 3uwc_A 268 LSEFIDVPVRREGVYHVFHIYVLRVK----------------YRDQLFQYLKD-NGIEVKIHYPIAMHLQPAAKS--LGY 328 (374)
T ss_dssp GTTTEECCCCCTTEECCCSSEEEEET----------------THHHHHHHHHH-TTBCCBCSCSSCGGGSGGGGG--GCC
T ss_pred CCCeEEeccCCCCCceeeEEEEEEcC----------------CHHHHHHHHHH-CCCccccCCCCccccChhhhh--cCC
Confidence 887 8775432111111122333221 25678888865 6999998862 2111110 010
Q ss_pred C---hhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 473 D---QTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 473 ~---~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
. .+....+ ..+.+||+++.++|++||++++++|++++++
T Consensus 329 ~~~~~~~~~~~-----------~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 329 QQGDFPMAEKH-----------GEAVITLPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp CTTSCHHHHHH-----------HHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred ccCCCccHHHH-----------HhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 0 0000000 1378999999999999999999999998865
No 107
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.94 E-value=3.7e-25 Score=238.37 Aligned_cols=364 Identities=11% Similarity=0.040 Sum_probs=230.6
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
.+.++.+.+++.+.+... +.+......+ ..++.+++++++++++|.+ +++++++|+ +++..++.+++
T Consensus 12 ~~~~~~~~~a~~~~~~~~--~~~~~~~~~g--~~~l~~~l~~~la~~~g~~---~~i~~~~gt-~al~~~~~~~~----- 78 (418)
T 2c81_A 12 PQHSDRTRRKIEEVFQSN--RWAISGYWTG--EESMERKFAKAFADFNGVP---YCVPTTSGS-TALMLALEALG----- 78 (418)
T ss_dssp SCCCHHHHHHHHHHHHHT--CCSTTSBCCS--SCCHHHHHHHHHHHHHTCS---EEEEESCHH-HHHHHHHHHTT-----
T ss_pred CCCCHHHHHHHHHHHhcC--CccccCcccC--CHHHHHHHHHHHHHHhCCC---cEEEeCCHH-HHHHHHHHHcC-----
Confidence 345688999988877432 1110001111 2455788999999999986 356665665 77888877763
Q ss_pred hhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCc
Q 043646 167 IMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNV 245 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~ 245 (625)
+++||+ |+++.++|+++...++..|++++.+++++ ++.+|+++|+++++ +++++|+++ |+
T Consensus 79 ---------~~~gd~--Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~-----~~~~~v~~~---~~ 139 (418)
T 2c81_A 79 ---------IGEGDE--VIVPSLTWIATATAVLNVNALPVFVDVEADTYCIDPQLIKSAIT-----DKTKAIIPV---HL 139 (418)
T ss_dssp ---------CCTTCE--EEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHGGGCC-----TTEEEECCB---CC
T ss_pred ---------CCCcCE--EEECCCccHhHHHHHHHcCCEEEEEecCCCCCCcCHHHHHHhhC-----CCCeEEEEe---CC
Confidence 467885 99999999999999999999999999986 67899999999887 578888764 58
Q ss_pred cccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEc--CCCCCCCCCCceEEEEe-ccccccCCCC
Q 043646 246 TGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLA--THKFLGGPGTPGILLIS-KALYQLGSSP 322 (625)
Q Consensus 246 TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S--~hK~lggp~g~G~l~v~-~~~~~l~~~~ 322 (625)
||...|+++|.++|+++|+++|+|++++.+.. .+...... ..|++++| +||++++ +..|+++.+ +++. +.+.
T Consensus 140 ~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~-~~~~~~~~-~~~~~~~s~s~~K~~~~-g~~g~~~~~~~~l~--~~~~ 214 (418)
T 2c81_A 140 FGSMANMDEINEIAQEHNLFVIEDCAQSHGSV-WNNQRAGT-IGDIGAFSCQQGKVLTA-GEGGIIVTKNPRLF--ELIQ 214 (418)
T ss_dssp TTCCCCHHHHHHHHHHTTCEEEEECTTCTTCE-ETTEETTS-SSSEEEEECCTTSSSCS-SSCEEEEESCHHHH--HHHH
T ss_pred cCCcccHHHHHHHHHHCCCEEEEECcccccCc-cCCEeccc-ccceEEEeccCCcccCC-CCeEEEEECCHHHH--HHHH
Confidence 99999999999999999999999999998763 22221110 12455555 4999986 456888885 4542 1222
Q ss_pred CcccCCceEEeeccccccccccccchhhhhc--CCChhH------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Q 043646 323 PSTCGGGTVNYVNAFDEKDTLYLEDIEEREN--GGTPQI------VQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGR 394 (625)
Q Consensus 323 p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~--~gt~~~------~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~ 394 (625)
+...++.... .+. ......+. .+++.+ ...+.+++... ...+.+.+.++.+.+++++.+.
T Consensus 215 ~~~~~~~~~~---~~~-------~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~--~l~~~~~~~~~~~~~~~~l~~~ 282 (418)
T 2c81_A 215 QLRADSRVYC---DDS-------SELMHGDMQLVKKGDIQGSNYCLSEFQSAILLD--QLQELDDKNAIREKNAMFLNDA 282 (418)
T ss_dssp HHHBTTEEEC---SCG-------GGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcccc---ccc-------cccccchhhccccccccCcCCCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222100 000 00000111 111111 01112222221 2234677788888889999999
Q ss_pred hCCCCcEEEeCCCCC--CCc-ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCee---eecCCCCCchhhHh
Q 043646 395 ILPNQNIQVLGNTSV--KRQ-AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQ---ARGGCACAGPYGHT 468 (625)
Q Consensus 395 L~~l~gv~v~~~~~~--~~~-~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~---v~~G~~~~~~~~~~ 468 (625)
|.++|++++..+... ... .++.+.+... ...+++..++.+.|.+++||. ++.|+.|.... ..
T Consensus 283 L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~-~~ 350 (418)
T 2c81_A 283 LSKIDGIKVMKRPPQVSRQTYYGYVFRFDPV-----------KFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKN-PL 350 (418)
T ss_dssp HTTSTTEEECCCCTTEEECCCSEEEEEECGG-----------GTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGC-TT
T ss_pred hccCCCcccCCCCCCCcccccEEEEEEEccc-----------cccccCHHHHHHHHHHcCCCCcccccccccccccC-ch
Confidence 999999998754321 112 2444444210 001245678999997755999 99887543100 00
Q ss_pred h--hcC-----------------ChhhHHHHHHHHHhCCCCCCCcEEEEecCCCC-CHHHHHHHHHHHHHHHHh
Q 043646 469 L--LAF-----------------DQTRSLEIRSAIQKGYLGVKPGWTRITFPYYM-SNEEFEFILAALEFIAAY 522 (625)
Q Consensus 469 ~--l~~-----------------~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~-t~edid~ll~aL~~~~~~ 522 (625)
+ ++. .-+....+ ..+++||+++.++ |++|+++++++|++++.+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~ 413 (418)
T 2c81_A 351 FCPWTKNRYLKSVRKTEAYWRGLHYPVSERA-----------SGQSIVIHHAILLAEPSHLSLLVDAVAELARK 413 (418)
T ss_dssp CCGGGCTTSCHHHHCCHHHHHTCCCHHHHHH-----------HHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHT
T ss_pred hcccccccccccccccccccccCCChHHHHH-----------HhCEEEecCCccCCCHHHHHHHHHHHHHHHHh
Confidence 0 000 00011000 1378999999999 999999999999998765
No 108
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.94 E-value=1e-25 Score=241.34 Aligned_cols=339 Identities=14% Similarity=0.114 Sum_probs=226.7
Q ss_pred CcchHHHHHHHHHhhCC--CCCCCCCCcchhhHHHH-HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccc
Q 043646 87 GRSLRYIEDYIINNVLP--FYGNTHTSDSYVGQRMT-KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGIT 163 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~--~~~n~~~~~~~~~~~~~-~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~ 163 (625)
.+.++.|.+++.+.+.. ..++|+.. +..+.... ...+.+++++++++|.+++ .++++ +|+. ++..++.++
T Consensus 33 ~~~~~~v~~a~~~~~~~~~~~~y~~~~-~~~g~~~~~~~e~~ar~~la~~~g~~~~-~i~~~-sGt~-a~~~~~~~~--- 105 (407)
T 2dkj_A 33 NFVSKQVREAVGSVLTNKYAEGYPGAR-YYGGCEVIDRVESLAIERAKALFGAAWA-NVQPH-SGSQ-ANMAVYMAL--- 105 (407)
T ss_dssp CCCCHHHHHHHTSGGGGCCCCEETTEE-SSSCCHHHHHHHHHHHHHHHHHHTCSEE-ECCCS-SHHH-HHHHHHHHH---
T ss_pred CCCCHHHHHHHHhhhhcCcccCCCccc-ccCCchHHHHHHHHHHHHHHHHhCCCcc-eEEec-chHH-HHHHHHHHh---
Confidence 34488999999887743 12233221 11122222 3334577899999998743 34454 7876 788887776
Q ss_pred ccchhhhhhhhccCCCCceEEEEcCCCCchhH---HHHHHcCC--eEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEE
Q 043646 164 VPSIMRDKLITSLRDEERWVVFLGPYEHHSNL---LSWRQSLA--EVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLG 237 (625)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~---~~~~~~G~--~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv 237 (625)
+++|++ |+++.++|+++. ..++..|+ .++.+++++ ++.+|+++|++++++ .++++|
T Consensus 106 ------------~~~gd~--Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~----~~~~~v 167 (407)
T 2dkj_A 106 ------------MEPGDT--LMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALE----HRPKVI 167 (407)
T ss_dssp ------------CCTTCE--EEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHH----HCCSEE
T ss_pred ------------cCCCCE--EEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhh----cCCeEE
Confidence 467885 888888998873 33444566 444444443 578999999999984 278999
Q ss_pred EEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEe-cccc
Q 043646 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLIS-KALY 316 (625)
Q Consensus 238 ~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~-~~~~ 316 (625)
++++++|+ .+.|+++|.++|++||+++|+|++|+.|....+.........|+++.|+||+++|+.+ |+++++ +++.
T Consensus 168 ~~~~p~~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~ 244 (407)
T 2dkj_A 168 VAGASAYP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRG-GLILSNDPELG 244 (407)
T ss_dssp EECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSC-EEEEESCHHHH
T ss_pred EEeccccC--CCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCc-eEEEECCHHHH
Confidence 99888886 7889999999999999999999999875543332211112479999999999988886 999998 5662
Q ss_pred ccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Q 043646 317 QLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM--IRAALAFWVKEYIGYEVIKKQEDVYIESALGR 394 (625)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~--~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~ 394 (625)
. .+.+.. ..+..++++..+. +.+++... ...+.+.+.++.+.+++++.+.
T Consensus 245 ~--~l~~~~------------------------~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~ 296 (407)
T 2dkj_A 245 K--RIDKLI------------------------FPGIQGGPLEHVIAGKAVAFFEA--LQPEFKEYSRLVVENAKRLAEE 296 (407)
T ss_dssp H--HHHHHH------------------------TTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHhhh------------------------cccccCCCcHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHH
Confidence 1 111110 0112344554333 23444443 2345678888999999999999
Q ss_pred hCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCCh
Q 043646 395 ILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQ 474 (625)
Q Consensus 395 L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~ 474 (625)
|+++ +++++.+. ..+.++.+.+... +++..++.+.|. ++||.+++|..+...... .
T Consensus 297 L~~~-g~~~~~~~--~~~~~~~~~~~~~--------------~~~~~~~~~~l~-~~gi~v~~~~~~~~~~~~---~--- 352 (407)
T 2dkj_A 297 LARR-GYRIVTGG--TDNHLFLVDLRPK--------------GLTGKEAEERLD-AVGITVNKNAIPFDPKPP---R--- 352 (407)
T ss_dssp HHHT-TCEEGGGS--CSSSEEEEECGGG--------------TCCHHHHHHHHH-HTTEECEECCCTTCSSCT---T---
T ss_pred HHhC-CceeecCC--CCceEEEEECccc--------------CCCHHHHHHHHH-HcCceecCCcCccccccc---c---
Confidence 9887 88887542 2345555544321 234667888884 589999987643100000 0
Q ss_pred hhHHHHHHHHHhCCCCCCCcEEEEecCCC----CCHHHHHHHHHHHHHHHHh
Q 043646 475 TRSLEIRSAIQKGYLGVKPGWTRITFPYY----MSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 475 ~~~~~~~~~~~~g~~g~~~g~iRis~~~~----~t~edid~ll~aL~~~~~~ 522 (625)
.++++|++++.+ ++++|+++++++|++++.+
T Consensus 353 -----------------~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 353 -----------------VTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp -----------------TCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred -----------------CCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 247899999754 7999999999999998766
No 109
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.94 E-value=1.3e-24 Score=232.03 Aligned_cols=345 Identities=13% Similarity=0.039 Sum_probs=232.4
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC---CCCcEEEeCChHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG---QADAIIFCGAGTTA 151 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~---~~~~vift~sGtta 151 (625)
+..+.|..+... +.|+.|.+++.+.+......+.. ....++.+++.+++++.+|.+ ++++|++| +|+++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~------~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t-~g~~~ 102 (396)
T 3jtx_A 30 MEAVPLHIGEPKHPTPKVITDALTASLHELEKYPLT------AGLPELRQACANWLKRRYDGLTVDADNEILPV-LGSRE 102 (396)
T ss_dssp CCCEECSCCSCCSCCCHHHHHHHHHTGGGGGSCCCT------TCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEE-SSHHH
T ss_pred CCeEEeCCcCCCCCCCHHHHHHHHHHhhhccCCCCC------CCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEc-CCcHH
Confidence 456777665443 35688999998877533333322 123566777778888888864 33279998 78999
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCC---ceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCC-CCCHHHHHHHHHH
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEE---RWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNG-LLDIEALRSQLEL 227 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd---~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~-~ld~~~L~~~l~~ 227 (625)
++..++.++ +++|+ +..|+++.+.|+++...++..|++++.++++.++ .+|+++|+++++
T Consensus 103 al~~~~~~~---------------~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~- 166 (396)
T 3jtx_A 103 ALFSFVQTV---------------LNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVW- 166 (396)
T ss_dssp HHHHHHHHH---------------CCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHH-
T ss_pred HHHHHHHHH---------------hCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhc-
Confidence 899988877 46652 1248889999999988888899999999996544 689999999998
Q ss_pred hhhCCCCeEEEEecccCccccccCHHH---HHHHHHHcCCEEEEeccCcCCCc----cccCCC----CC-CCCCcEEEEc
Q 043646 228 YKAAKRPMLGSFSACSNVTGIYSDTRS---IARLLHQYGGFACFDFAASGPYV----KINLRS----RN-IDGYDAIFLA 295 (625)
Q Consensus 228 ~~~~~~~~lv~~~~~~n~TG~~~~l~~---I~~la~~~g~~vivD~A~~~g~~----~id~~~----~~-~~~~D~v~~S 295 (625)
+++++|++++++||||.+.|.++ |+++|++||+++|+|++++.... +..... +. ..+.++++.|
T Consensus 167 ----~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 242 (396)
T 3jtx_A 167 ----KRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTS 242 (396)
T ss_dssp ----HTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEE
T ss_pred ----cCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEec
Confidence 37999999999999999987655 99999999999999999875322 111100 00 0256788999
Q ss_pred CCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhh
Q 043646 296 THKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEY 374 (625)
Q Consensus 296 ~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~ 374 (625)
++|.++.|+ ++|+++.++++.. .+.. ......++++......+ .+.+ ...
T Consensus 243 ~sK~~~~~G~r~G~~~~~~~~~~--~~~~-------------------------~~~~~~~~~~~~~~~a~-~~~l-~~~ 293 (396)
T 3jtx_A 243 LSKRSNVPGLRSGFVAGDAELLK--NFLL-------------------------YRTYHGSAMSIPVQRAS-IAAW-DDE 293 (396)
T ss_dssp STTTSSCGGGCCEEEEECHHHHH--HHHH-------------------------HHHHHTCCCCHHHHHHH-HHHH-HCC
T ss_pred cccccCCcccceEEEEeCHHHHH--HHHH-------------------------HHhhcccCCCHHHHHHH-HHHh-CCH
Confidence 999876553 4799988877621 1100 01111233333333222 2222 123
Q ss_pred cCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCee
Q 043646 375 IGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQ 454 (625)
Q Consensus 375 ~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~ 454 (625)
...+.++++.+.+++++.+.|.++ +.+..+ ..+.+.+...+. .+..++++.|.+++||.
T Consensus 294 ~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~----~~~~~~~~~~~~---------------~~~~~~~~~l~~~~gi~ 352 (396)
T 3jtx_A 294 QHVIDNRRLYQEKFERVIPILQQV--FDVKLP----DASFYIWLKVPD---------------GDDLAFARNLWQKAAIQ 352 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT--SCCCCC----SSSSEEEEECTT---------------SCHHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--CCccCC----CeeEEEEEECCC---------------CCHHHHHHHHHHHCCEE
Confidence 345677778888888999999875 223333 335555544432 23567888887778999
Q ss_pred eecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 455 ARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 455 v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
+++|..|+..... ....++++||+++. +++++++++++|++++
T Consensus 353 v~~g~~~~~~~~~---------------------~~~~~~~iRis~~~--~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 353 VLPGRFLARDTEQ---------------------GNPGEGYVRIALVA--DVATCVKAAEDIVSLY 395 (396)
T ss_dssp CEEGGGGCCCCTT---------------------CCTTTTEEEEECCS--CHHHHHHHHHHHHHHC
T ss_pred EeCChHhCCcccc---------------------cCCCCCeEEEEEcC--CHHHHHHHHHHHHHHh
Confidence 9999887632000 00135899999975 8999999999998763
No 110
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.94 E-value=7.6e-25 Score=236.64 Aligned_cols=352 Identities=13% Similarity=0.080 Sum_probs=224.1
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhCCCCC-----CC-CCCcchhhHHHHHHHHHHHHHHHHHhC--------CCCCCc
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYG-----NT-HTSDSYVGQRMTKMVHEASNYIKRCLG--------GGQADA 141 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~-----n~-~~~~~~~~~~~~~~~~~~~~~ia~~~g--------~~~~~~ 141 (625)
+..+.|+.+.....++.+.+++.+....... .. ....|....+ ..++++.++++++ .+++ +
T Consensus 36 ~~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g----~~~lr~~la~~~~~~~g~~~~~~~~-~ 110 (428)
T 1iay_A 36 NGVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHG----LPEFRKAIAKFMEKTRGGRVRFDPE-R 110 (428)
T ss_dssp TSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTC----CHHHHHHHHHHHHHHTTTCSCCCTT-S
T ss_pred CceeeeccccchhhHHHHHHHHHhccccccccccccccHhhcCCCCCCC----cHHHHHHHHHHHHHhcCCCCCCChh-h
Confidence 4577888776666677888888754311000 00 0000100001 2345555555554 5455 7
Q ss_pred EEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH-HcCCeEEEEecCC--CCCCCH
Q 043646 142 IIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR-QSLAEVVEIGLDD--NGLLDI 218 (625)
Q Consensus 142 vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~-~~G~~vv~v~~~~--~~~ld~ 218 (625)
|++| +|+++++..++.++ .++||+ |+++.+.|+++...+. ..|++++.++.+. +..+|+
T Consensus 111 i~~~-~G~~~ai~~~~~~~---------------~~~gd~--Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 172 (428)
T 1iay_A 111 VVMA-GGATGANETIIFCL---------------ADPGDA--FLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITS 172 (428)
T ss_dssp CEEE-EHHHHHHHHHHHHH---------------CCTTCE--EEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCH
T ss_pred EEEc-cChHHHHHHHHHHh---------------CCCCCe--EEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCH
Confidence 8998 89999999988877 468885 8899999998876554 5799999999874 346899
Q ss_pred HHHHHHHHHhh-hCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCCCC---
Q 043646 219 EALRSQLELYK-AAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRNID--- 287 (625)
Q Consensus 219 ~~L~~~l~~~~-~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~~~--- 287 (625)
++|++++++.. ..+++++|++++++||||.+.| +++|+++|++||+++|+|++++.... ..++..+...
T Consensus 173 ~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~ 252 (428)
T 1iay_A 173 KAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEM 252 (428)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGG
T ss_pred HHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhcccccc
Confidence 99999997422 1237899999999999999999 89999999999999999999875221 1121111100
Q ss_pred ---CCc--EEEEcCCCCCCCCC-CceEEEE-eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHH
Q 043646 288 ---GYD--AIFLATHKFLGGPG-TPGILLI-SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV 360 (625)
Q Consensus 288 ---~~D--~v~~S~hK~lggp~-g~G~l~v-~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 360 (625)
++| +++.|+||+||.|+ .+|++++ ++++.. .+.. .. ...+.+..
T Consensus 253 ~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~--~~~~-------------------------~~--~~~~~~~~ 303 (428)
T 1iay_A 253 TYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVN--CARK-------------------------MS--SFGLVSTQ 303 (428)
T ss_dssp TTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHH--HHHH-------------------------HH--TTSCCCHH
T ss_pred ccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHH--HHHH-------------------------HH--hcccCCHH
Confidence 267 78899999997443 3699998 455421 1100 00 01122222
Q ss_pred HHHHHHHHHHHHhh----cCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCC
Q 043646 361 QMIRAALAFWVKEY----IGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNK 436 (625)
Q Consensus 361 ~~~~aal~~~~~~~----~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~ 436 (625)
... ++..++ ... ...+.+.++...+++++.+.|.++ +++++.+ ..+++.+...+.... ...
T Consensus 304 ~~~-a~~~~l-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~----~~g~~~~~~~~~~~~--------~~~ 368 (428)
T 1iay_A 304 TQY-FLAAML-SDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKN----NAGLFCWMDLRPLLR--------EST 368 (428)
T ss_dssp HHH-HHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCC----SSSSEEEEECGGGCS--------SSS
T ss_pred HHH-HHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCC----CeeEEEEEechhhcC--------CCc
Confidence 211 112221 111 124567777888889999999877 6766543 234444443332100 000
Q ss_pred CCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHH
Q 043646 437 PLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAAL 516 (625)
Q Consensus 437 ~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL 516 (625)
.....++.+.|.+++||.+++|..|... .++++||+++ .++++++++++++|
T Consensus 369 ~~~~~~l~~~l~~~~gi~v~~~~~~~~~---------------------------~~~~iRis~~-~~~~e~i~~~~~~l 420 (428)
T 1iay_A 369 FDSEMSLWRVIINDVKLNVSPGSSFECQ---------------------------EPGWFRVCFA-NMDDGTVDIALARI 420 (428)
T ss_dssp HHHHHHHHHHHHHTSCEECEEGGGGTCS---------------------------SSSEEEEECS-SSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCCEEEeCchhhCCC---------------------------CCCEEEEEEe-cCCHHHHHHHHHHH
Confidence 0123467888877679999987655311 1479999998 68999999999999
Q ss_pred HHHHHh
Q 043646 517 EFIAAY 522 (625)
Q Consensus 517 ~~~~~~ 522 (625)
++++++
T Consensus 421 ~~~l~~ 426 (428)
T 1iay_A 421 RRFVGV 426 (428)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 998764
No 111
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.94 E-value=5.8e-25 Score=236.21 Aligned_cols=340 Identities=11% Similarity=0.016 Sum_probs=228.9
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAA 152 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaa 152 (625)
+..++|+.+... +.++.+.+++ +.+.... . .|.......++.+++.+++.+.+|. +++ +|++| +|++++
T Consensus 43 ~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~~----~-~y~~~~g~~~l~~~la~~~~~~~g~~~~~~-~v~~~-~g~t~a 114 (409)
T 2gb3_A 43 VRIHHLNIGQPDLKTPEVFFERI-YENKPEV----V-YYSHSAGIWELREAFASYYKRRQRVDVKPE-NVLVT-NGGSEA 114 (409)
T ss_dssp CEEEECSSCCCCSCCCTHHHHHH-HHTCCSS----C-CCCCTTCCHHHHHHHHHHHHHTSCCCCCGG-GEEEE-SHHHHH
T ss_pred CCEEeccCCCCCCCCCHHHHHHH-HHHhcCC----C-CCCCCCCcHHHHHHHHHHHHHHhCCCCCHH-HEEEe-CCHHHH
Confidence 457788877665 4567899998 7774311 0 1111112234444455555444453 334 89998 788888
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhh
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKA 230 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~ 230 (625)
+..++.++ +++||+ |+++.+.|+++...++..|++++.++.++ +..+ +++|+++++
T Consensus 115 ~~~~~~~~---------------~~~gd~--Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~---- 172 (409)
T 2gb3_A 115 ILFSFAVI---------------ANPGDE--ILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFIN---- 172 (409)
T ss_dssp HHHHHHHH---------------CCTTCE--EEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCC----
T ss_pred HHHHHHHh---------------CCCCCE--EEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhC----
Confidence 98888876 467885 99999999999888888999999999875 2334 788888776
Q ss_pred CCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc---ccc-CCCCCCCCCcEEEEcCCCCCCCC
Q 043646 231 AKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---KIN-LRSRNIDGYDAIFLATHKFLGGP 303 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~---~id-~~~~~~~~~D~v~~S~hK~lggp 303 (625)
+++++|++++++||||.+.| +++|+++|++||+++|+|++++.+.. ... +.. ..+.|+++.|+||++|.|
T Consensus 173 -~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~--~~~~~i~~~s~sK~~g~~ 249 (409)
T 2gb3_A 173 -ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSI--ESDKVVVIDSVSKKFSAC 249 (409)
T ss_dssp -TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGS--CCTTEEEEEESTTTTTCG
T ss_pred -cCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCcccc--CCCCEEEEecchhccCCc
Confidence 47899999999999999865 78999999999999999999886542 122 221 125699999999999744
Q ss_pred C-CceEEEEec-cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHH
Q 043646 304 G-TPGILLISK-ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIK 381 (625)
Q Consensus 304 ~-g~G~l~v~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~ 381 (625)
+ .+|++++++ ++.. .+.+. ..... +++..... ++.+.+.....+.+.+.
T Consensus 250 G~r~G~~~~~~~~l~~--~l~~~------------------------~~~~~--~~~~~~~~-a~~~~l~~~~~~~~~~~ 300 (409)
T 2gb3_A 250 GARVGCLITRNEELIS--HAMKL------------------------AQGRL--APPLLEQI-GSVGLLNLDDSFFDFVR 300 (409)
T ss_dssp GGCCEEEECSCHHHHH--HHHHH------------------------HHHSC--CCCHHHHH-HHHHHHTCCHHHHHHHH
T ss_pred cceEEEEEECcHHHHH--HHHHH------------------------HhccC--CCCHHHHH-HHHHHHhccHHHHHHHH
Confidence 3 379999988 6621 11000 01111 22322221 11222200122355677
Q ss_pred HHHHHHHHHHHHhhCCCCcEEE-eCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhh-----cCeee
Q 043646 382 KQEDVYIESALGRILPNQNIQV-LGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDL-----FGIQA 455 (625)
Q Consensus 382 ~~~~~l~~~l~~~L~~l~gv~v-~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~-----~gI~v 455 (625)
++.+.+++++.+.|.++ ++++ ..+ ..+++.+...++ .+..++.+.|.++ +||.+
T Consensus 301 ~~~~~~~~~l~~~L~~~-g~~~~~~~----~~~~~~~~~~~~---------------~~~~~l~~~l~~~~~~~~~gi~v 360 (409)
T 2gb3_A 301 ETYRERVETVLKKLEEH-GLKRFTKP----SGAFYITAELPV---------------EDAEEFARWMLTDFNMDGETTMV 360 (409)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCCBCCC----SBSSEEEEECSS---------------SCHHHHHHHHHHSCCBTTEEEEC
T ss_pred HHHHHHHHHHHHHHHHc-CceeeeCC----CeeEEEEEEeCC---------------CCHHHHHHHHHhccccccCcEEE
Confidence 78888889999999877 7766 443 235555544331 2366788888765 59999
Q ss_pred ecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 456 RGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 456 ~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
++|..|.... +..++++||+++ ++++++++++++|++++.+.
T Consensus 361 ~~g~~f~~~~------------------------~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~~ 402 (409)
T 2gb3_A 361 APLRGFYLTP------------------------GLGKKEIRIACV--LEKDLLSRAIDVLMEGLKMF 402 (409)
T ss_dssp EEGGGGCSST------------------------TTTSSEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred eCchHhCCCC------------------------CCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHh
Confidence 9887654210 002589999998 79999999999999988664
No 112
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.93 E-value=1.6e-24 Score=235.69 Aligned_cols=338 Identities=13% Similarity=0.141 Sum_probs=225.2
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC-CCCCcEEEeCChHHHHHHHHHHHhcccccch
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG-GQADAIIFCGAGTTAAIKRLQEVMGITVPSI 167 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~-~~~~~vift~sGttaal~~l~~~l~~~~~~~ 167 (625)
+++.+.+++.+.+.... .....|.......++.+.+.+++++.+|. +++ +|++| +|+++++..++.++
T Consensus 92 p~~~v~~a~~~~l~~~~--~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~v~~t-~G~~~al~~~~~~l------- 160 (448)
T 3aow_A 92 PKEIIRDILVEIMEKYA--DKALQYGTTKGFTPLRETLMKWLGKRYGISQDN-DIMIT-SGSQQALDLIGRVF------- 160 (448)
T ss_dssp CHHHHHHHHHHHHHHSH--HHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTS-EEEEE-SSHHHHHHHHHHHH-------
T ss_pred CHHHHHHHHHHHHHhhh--HHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChh-hEEEe-CcHHHHHHHHHHHH-------
Confidence 56788888877664210 00001111112234444444444444498 444 89998 78999999998887
Q ss_pred hhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhh-hCCCCeEE-EEecccCc
Q 043646 168 MRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYK-AAKRPMLG-SFSACSNV 245 (625)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~-~~~~~~lv-~~~~~~n~ 245 (625)
+++||+ |++..+.|+++...++..|++++.+|.++++ +|+++|+++++... ...++++| ++++++||
T Consensus 161 --------~~~Gd~--Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NP 229 (448)
T 3aow_A 161 --------LNPGDI--VVVEAPTYLAALQAFNFYEPQYIQIPLDDEG-MKVEILEEKLKELKSQGKKVKVVYTVPTFQNP 229 (448)
T ss_dssp --------CCTTCE--EEEEESCCHHHHHHHHTTCCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTT
T ss_pred --------cCCCCE--EEEeCCChHHHHHHHHHcCCEEEEeccCCCC-CCHHHHHHHHhhhhccCCCCeEEEECCCCCCC
Confidence 478885 9999999999988888899999999988765 89999999997211 11378887 57899999
Q ss_pred cccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccc
Q 043646 246 TGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQ 317 (625)
Q Consensus 246 TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~ 317 (625)
||.+.+ +++|.++|++||+++|+|++++.... ...+..+...+.++++.|++|+|+ |+ .+|++++++++..
T Consensus 230 tG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~GlriG~v~~~~~l~~ 308 (448)
T 3aow_A 230 AGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PGFRIGWMVGDPGIIR 308 (448)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCCEEEEECHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-ccccEEEEEeCHHHHH
Confidence 999987 46899999999999999999876432 122333222255788899999998 54 4899999987722
Q ss_pred cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHh
Q 043646 318 LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE---YIGYEVIKKQEDVYIESALGR 394 (625)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~---~~g~~~i~~~~~~l~~~l~~~ 394 (625)
.+.. .......+++.+.+. ++.+++ .. ....+.++++.+.+++++.+.
T Consensus 309 --~l~~------------------------~~~~~~~~~~~~~q~--a~~~~L-~~~~~~~~~~~~~~~~~~~~~~l~~~ 359 (448)
T 3aow_A 309 --KMEI------------------------AKQSTDLCTNVFGQV--VAWRYV-DGGYLEKHIPEIRKFYKPRRDAMLEA 359 (448)
T ss_dssp --HHHH------------------------HHHHHHSSCCHHHHH--HHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHH------------------------HHHHhcCCCCHHHHH--HHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100 011112233333332 122222 11 112445666677778888888
Q ss_pred hCC-CC-cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcC
Q 043646 395 ILP-NQ-NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAF 472 (625)
Q Consensus 395 L~~-l~-gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~ 472 (625)
|.+ +| ++++..+. .+.+.+...+. +++..++.+.|.++ ||.+++|..|...
T Consensus 360 L~~~~~~g~~~~~p~----~g~~~~v~~~~--------------~~~~~~l~~~l~~~-gV~v~pg~~f~~~-------- 412 (448)
T 3aow_A 360 LEEFMPEGVKWTKPE----GGMFIWVTLPD--------------GIDSKKMLERAIKK-GVAYVPGEAFYAH-------- 412 (448)
T ss_dssp HHHHCCTTCEECCCS----BSSEEEEECST--------------TCCHHHHHHHHHHT-TEECEEGGGGSTT--------
T ss_pred HHHhCCCCeEEeCCC----ccEEEEEEcCC--------------CCCHHHHHHHHHHC-CcEEEcchhhcCC--------
Confidence 876 57 68876553 34555544432 23467888888764 9999998766411
Q ss_pred ChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 473 DQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 473 ~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
+..++++||+++. .++++++.++++|++++.+.
T Consensus 413 -----------------~~~~~~iRls~~~-~~~e~i~~~~~~L~~~l~~~ 445 (448)
T 3aow_A 413 -----------------RDVKNTMRLNFTY-VDEDKIMEGIKRLAETIKEE 445 (448)
T ss_dssp -----------------CCCCSEEEEECSS-SCTHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHH
Confidence 0025899999986 48999999999999987653
No 113
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.93 E-value=5.5e-25 Score=234.40 Aligned_cols=349 Identities=12% Similarity=0.058 Sum_probs=225.1
Q ss_pred hHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhh
Q 043646 90 LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMR 169 (625)
Q Consensus 90 p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~ 169 (625)
++.+.+++.+.+... +. .+. ......++++.+++++|.+ + .|+++ +| ++++..++.+++
T Consensus 16 ~~~~~~a~~~~l~~~--~~---~~~----~~~~~~~l~~~la~~~~~~-~-~i~~~-sG-t~al~~~l~~l~-------- 74 (388)
T 1b9h_A 16 DDAERNGLVRALEQG--QW---WRM----GGDEVNSFEREFAAHHGAA-H-ALAVT-NG-THALELALQVMG-------- 74 (388)
T ss_dssp CHHHHHHHHHHHHTS--CC---BTT----TCSHHHHHHHHHHHHTTCS-E-EEEES-CH-HHHHHHHHHHTT--------
T ss_pred CHHHHHHHHHHHHcC--Ce---eec----CCHHHHHHHHHHHHHhCCC-e-EEEeC-CH-HHHHHHHHHHcC--------
Confidence 478888888877431 10 111 1234677999999999986 2 56665 78 677888887763
Q ss_pred hhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcccc
Q 043646 170 DKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGI 248 (625)
Q Consensus 170 ~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~ 248 (625)
+++||+ |+++.++|+++...++..|++++.+++++ ++.+|+++|+++++ +++++|+ ++|+||.
T Consensus 75 ------~~~gd~--Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~-----~~~~~v~---~~n~tG~ 138 (388)
T 1b9h_A 75 ------VGPGTE--VIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVT-----PRTKVIM---PVHMAGL 138 (388)
T ss_dssp ------CCTTCE--EEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCC-----TTEEEEC---CBCGGGC
T ss_pred ------CCCcCE--EEECCCccHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcC-----cCceEEE---EeCCccC
Confidence 467875 99999999999999999999999999987 47899999999987 5788776 8899999
Q ss_pred ccCHHHHHHHHHHcCCEEEEeccCcCCCcc--ccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecccc-ccCCCCCcc
Q 043646 249 YSDTRSIARLLHQYGGFACFDFAASGPYVK--INLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALY-QLGSSPPST 325 (625)
Q Consensus 249 ~~~l~~I~~la~~~g~~vivD~A~~~g~~~--id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~-~l~~~~p~~ 325 (625)
+.|+++|.++|++||+++|+|++++.|... .++..+ ..+++.++|.||+++++. .|+++.+++.. .+..+...
T Consensus 139 ~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~--~~i~~~S~s~~K~l~g~~-~G~~~~~~~~~~~~~~~~~~- 214 (388)
T 1b9h_A 139 MADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGEL--DSIATFSFQNGKLMTAGE-GGAVVFPDGETEKYETAFLR- 214 (388)
T ss_dssp CCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGS--SSCEEEECCTTSSSCSSS-CEEEEECTTCHHHHHHHHHH-
T ss_pred cCCHHHHHHHHHHcCCEEEEecchhcCCccCCeecccc--cceEEEEccCCCcccCCC-eEEEEECCHHHHHHHHHHHH-
Confidence 999999999999999999999999987654 334333 125566666789997665 59988887631 00111100
Q ss_pred cCCceEEeeccccccccccccchhhhhcCCC---hhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE
Q 043646 326 CGGGTVNYVNAFDEKDTLYLEDIEERENGGT---PQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ 402 (625)
Q Consensus 326 ~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt---~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~ 402 (625)
.+++. ......| .....|+ ++..+. +++.. ....++...++.+++++++.+.|.++|+++
T Consensus 215 ~~~~~-------~~~~~~~-----~~~~~g~~~~~~~~~~--a~~~~---~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~ 277 (388)
T 1b9h_A 215 HSCGR-------PRDDRRY-----FHKIAGSNMRLNEFSA--SVLRA---QLARLDEQIAVRDERWTLLSRLLGAIDGVV 277 (388)
T ss_dssp TBTTC-------CTTCSSC-----CCCSCCCBCBCBHHHH--HHHHH---HHTTHHHHHHHHHHHHHHHHHHHHTSTTCE
T ss_pred HhCCC-------CccCccc-----eeecccccCCcCHHHH--HHHHH---HHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 11111 0000000 0011233 232222 11111 112345566777778999999999988998
Q ss_pred EeCCCCC--CC-cceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhh--hcCCh---
Q 043646 403 VLGNTSV--KR-QAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTL--LAFDQ--- 474 (625)
Q Consensus 403 v~~~~~~--~~-~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~--l~~~~--- 474 (625)
+..+... .. ..++.+.+ ++. .+.+..++.+.|.+ +||.++.+..... ....+ ++...
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~-~~~------------~~~~~~~l~~~L~~-~gI~v~~~~~~~~-~~~~~~~~~~~~~~~ 342 (388)
T 1b9h_A 278 PQGGDVRADRNSHYMAMFRI-PGL------------TEERRNALVDRLVE-AGLPAFAAFRAIY-RTDAFWELGAPDESV 342 (388)
T ss_dssp ECCCCTTCCBCCCSEEEEEC-TTC------------CHHHHHHHHHHHHH-TTCCEEECCCCGG-GSHHHHHSSCCSSCH
T ss_pred ccCCCcCCCccceEEEEEEe-CCc------------CcccHHHHHHHHHH-CCCCcccccCccc-cChHhHhcCCCcccc
Confidence 8764321 12 23444443 321 00124578888865 7999988654221 00000 01100
Q ss_pred -------hhHHHHHHHHHhCCCCCCCcEEEEecCCCC-CHHHHHHHHHHHHHHHHh
Q 043646 475 -------TRSLEIRSAIQKGYLGVKPGWTRITFPYYM-SNEEFEFILAALEFIAAY 522 (625)
Q Consensus 475 -------~~~~~~~~~~~~g~~g~~~g~iRis~~~~~-t~edid~ll~aL~~~~~~ 522 (625)
+...++ ..+.+||+++..+ |++||++++++|++++.+
T Consensus 343 ~~~~~~~~~~~~~-----------~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 343 DAIARRCPNTDAI-----------SSDCVWLHHRVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp HHHHHTCHHHHHH-----------HHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHH-----------HhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 011110 1368999999999 999999999999988754
No 114
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.93 E-value=4.6e-25 Score=238.26 Aligned_cols=341 Identities=14% Similarity=0.120 Sum_probs=222.4
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC---CCCCCcEEEeCChHHHHHHHHHHHhccccc
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG---GGQADAIIFCGAGTTAAIKRLQEVMGITVP 165 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g---~~~~~~vift~sGttaal~~l~~~l~~~~~ 165 (625)
+++.+.+++.+.+.... .....|.......++.+++.+++++.+| ++++ +|++| +|+++++..++.++
T Consensus 59 ~~~~v~~a~~~~~~~~~--~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~-~v~~t-~G~~~al~~~~~~l----- 129 (425)
T 1vp4_A 59 PRKELAEIAKEIIEKEY--HYTLQYSTTEGDPVLKQQILKLLERMYGITGLDED-NLIFT-VGSQQALDLIGKLF----- 129 (425)
T ss_dssp CHHHHHHHHHHHHHHSH--HHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGG-GEEEE-EHHHHHHHHHHHHH-----
T ss_pred CHHHHHHHHHHHHhhcc--hhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcc-cEEEe-ccHHHHHHHHHHHh-----
Confidence 56788888887764210 0000111111223444445555544448 4444 89998 89999999988877
Q ss_pred chhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhh---CCCCeEE-EEec
Q 043646 166 SIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKA---AKRPMLG-SFSA 241 (625)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~---~~~~~lv-~~~~ 241 (625)
+++||+ |++..+.|+++...++..|++++.+|.++++ +|+++|++++++... ..++++| ++++
T Consensus 130 ----------~~~gd~--Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~ 196 (425)
T 1vp4_A 130 ----------LDDESY--CVLDDPAYLGAINAFRQYLANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSN 196 (425)
T ss_dssp ----------CCTTCE--EEEEESCCHHHHHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECS
T ss_pred ----------CCCCCE--EEEeCCCcHHHHHHHHHcCCEEEEeccCCCC-CCHHHHHHHHHhhhhcccCCCceEEEECCC
Confidence 467885 8889999999988888899999999987765 899999999974110 1268887 5899
Q ss_pred ccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEec
Q 043646 242 CSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISK 313 (625)
Q Consensus 242 ~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~ 313 (625)
++||||.+.| +++|+++|++||+++|+|++++.... ..++..+...+.++++.|++|+++ |+ .+|++++++
T Consensus 197 ~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~ 275 (425)
T 1vp4_A 197 FHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLRIGMVAGSK 275 (425)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCEEEEECCH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-cccceEEEeeCH
Confidence 9999999987 56889999999999999999876432 122222211245788899999998 54 379999987
Q ss_pred cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHH
Q 043646 314 ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE--YIGYEVIKKQEDVYIESA 391 (625)
Q Consensus 314 ~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~--~~g~~~i~~~~~~l~~~l 391 (625)
++. +.+.+. ......+++.+.+. ++.+++... ....+.+.++.+++++++
T Consensus 276 ~~~--~~l~~~------------------------~~~~~~~~~~~~~~--a~~~~l~~~~~~~~~~~~~~~~~~~~~~l 327 (425)
T 1vp4_A 276 EFI--RKIVQA------------------------KQSADLCSPAITHR--LAARYLERYDLLEQLKPTIELYRRKRTVM 327 (425)
T ss_dssp HHH--HHHHHH------------------------HHHHHSSCCHHHHH--HHHHHHHHSCHHHHTHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHH------------------------hhhhcCCCCHHHHH--HHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 762 111100 11111223222222 222222110 112345666777778888
Q ss_pred HHhhCC-CC---cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhH
Q 043646 392 LGRILP-NQ---NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGH 467 (625)
Q Consensus 392 ~~~L~~-l~---gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~ 467 (625)
.+.|.+ +| ++++..+. .+.+.+...+. +++..++.+.|.++ ||.+++|..|...
T Consensus 328 ~~~L~~~~~~~~g~~~~~~~----~g~~~~~~~~~--------------~~~~~~l~~~l~~~-gi~v~~g~~f~~~--- 385 (425)
T 1vp4_A 328 LNALEEYFSDIPGVKWVKSE----GGLFIWLTLPE--------------GFDTWEMFEYAKRK-KVFYVPGRVFKVY--- 385 (425)
T ss_dssp HHHHHHHSTTSTTCEECCCS----BSSEEEEECCT--------------TCCTTTTHHHHHHH-TEECEEGGGGCTT---
T ss_pred HHHHHHhCCCCCceEEecCC----ccEEEEEEcCC--------------CCCHHHHHHHHHHC-CCEEECchhhcCC---
Confidence 888876 35 68876553 34444443332 12344678888664 9999988766411
Q ss_pred hhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 468 TLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 468 ~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
+..++++||+++.. +++|+++++++|++++.+..+
T Consensus 386 ----------------------~~~~~~iRis~~~~-~~e~i~~~l~~l~~~l~~~~~ 420 (425)
T 1vp4_A 386 ----------------------DEPSPSMRLSFCLP-PDEKIVEGIKRLREVVLEYGK 420 (425)
T ss_dssp ----------------------CCCCSEEEEECSSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHHHh
Confidence 00248999999874 899999999999998876544
No 115
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.93 E-value=2.2e-24 Score=230.08 Aligned_cols=359 Identities=12% Similarity=0.033 Sum_probs=228.3
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
...++.+.+++.+.+...+ +.. .....++++.+++++|.+ +++++++|++ ++..++.++....
T Consensus 11 ~~~~~~~~~a~~~~~~~~~-------~~~----~~~~~~l~~~la~~~~~~---~~i~~~sGt~-a~~~al~~~~~~~-- 73 (390)
T 3b8x_A 11 STWDDLEYKAIQSVLDSKM-------FTM----GEYVKQYETQFAKTFGSK---YAVMVSSGST-ANLLMIAALFFTK-- 73 (390)
T ss_dssp CCCCHHHHHHHHHHHHHTC-------CSS----CHHHHHHHHHHHHHHTCS---EEEEESCHHH-HHHHHHHHTTSSS--
T ss_pred CCCCHHHHHHHHHHHHcCC-------CCC----ChHHHHHHHHHHHHHCCC---cEEEECCHHH-HHHHHHHHHHhhh--
Confidence 4467788888888774311 111 235678999999999986 4677767875 6777766651000
Q ss_pred hhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC-CCCCHHHHHHHHHHhhhCCCCeEEEEecccCc
Q 043646 167 IMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN-GLLDIEALRSQLELYKAAKRPMLGSFSACSNV 245 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~-~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~ 245 (625)
...+++|++ |+++..+|+++..+++..|++++.++++++ +.+|+++|+++++ +++++|++++ +
T Consensus 74 ------~~~~~~g~~--Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~-----~~~~~v~~~~---~ 137 (390)
T 3b8x_A 74 ------KPRLKKGDE--IIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVT-----DSTKAILTVN---L 137 (390)
T ss_dssp ------SCSCCTTCE--EEEESSSCHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCC-----TTEEEEEEEC---G
T ss_pred ------hcCCCCcCE--EEECCCCcHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhC-----cCCeEEEEEC---C
Confidence 001467775 999999999999999999999999999875 8899999999987 5789988874 6
Q ss_pred cccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcC--CCCCCCCCCceEEEEec-cccccCCCC
Q 043646 246 TGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLAT--HKFLGGPGTPGILLISK-ALYQLGSSP 322 (625)
Q Consensus 246 TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~--hK~lggp~g~G~l~v~~-~~~~l~~~~ 322 (625)
+|...|+++|.++|+++|+++|+|+||+.|... +.+..+. ..|+.++|. .|.++++.| |++++++ .+. +.+.
T Consensus 138 ~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~-~~~~~g~-~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~--~~~~ 212 (390)
T 3b8x_A 138 LGNPNNFDEINKIIGGRDIILLEDNCESMGATF-NNKCAGT-FGLMGTFSSFYSNHIATMEG-GCIVTDDEEIY--HILL 212 (390)
T ss_dssp GGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEE-TTEETTS-SSSEEEEECCTTSSSCSSSC-EEEEESCHHHH--HHHH
T ss_pred ccChhhHHHHHHHHHHcCCEEEEECcCcccCEE-CCccccc-ccceEEEEccCCCCCccCCc-eEEEeCCHHHH--HHHH
Confidence 798999999999999999999999999988765 4444311 236666542 344554555 8888886 442 1122
Q ss_pred CcccCC--ce---EEeec--cccccccccccchhhhhcCCChhHHHHHHHH-HHHHHHhhcCHHHHHHHHHHHHHHHHHh
Q 043646 323 PSTCGG--GT---VNYVN--AFDEKDTLYLEDIEERENGGTPQIVQMIRAA-LAFWVKEYIGYEVIKKQEDVYIESALGR 394 (625)
Q Consensus 323 p~~~gg--g~---v~~~~--~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aa-l~~~~~~~~g~~~i~~~~~~l~~~l~~~ 394 (625)
+...+| +. ...+. .........+......+..+++++.+.+..+ ++ .++.+.++.+++++++.+.
T Consensus 213 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~-------~l~~~~~~~~~~~~~l~~~ 285 (390)
T 3b8x_A 213 CIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLK-------KLPRFISVRRKNAEYFLDK 285 (390)
T ss_dssp HHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 222222 10 00000 0000000000000112233466665544322 22 2456778888899999999
Q ss_pred hCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeec---CCCCCc-hhhHh--
Q 043646 395 ILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARG---GCACAG-PYGHT-- 468 (625)
Q Consensus 395 L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~---G~~~~~-~~~~~-- 468 (625)
|.++|++++..+. .+.+.+.|.+.-.. ..+++..++.+.|.+ +||.++. |+.|.. |....
T Consensus 286 L~~~~~~~~~~~~--~~~~~~~~~i~~~~-----------~~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~ 351 (390)
T 3b8x_A 286 FKDHPYLDVQQET--GESSWFGFSFIIKK-----------DSGVIRKQLVENLNS-AGIECRPIVTGNFLKNTDVLKYFD 351 (390)
T ss_dssp HTTCSSEEECCCC--SBCCCCEEEEEECT-----------TSCCCHHHHHHHHHH-TTBCCBCSTTSSGGGCHHHHTTCE
T ss_pred hcCCCCcccCCCC--CCcccEEEEEEecC-----------cCcccHHHHHHHHHH-CCCCeeeecCCchhhcchhhhcCC
Confidence 9999999887642 23344334332110 012457789999955 7999997 666766 54321
Q ss_pred ---hhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 043646 469 ---LLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALE 517 (625)
Q Consensus 469 ---~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~ 517 (625)
+..++..... ..+.+||+++.++|++|+++++++|+
T Consensus 352 ~~~~~~~~~~~~~-------------~~~~l~l~~~~~~t~~di~~i~~~l~ 390 (390)
T 3b8x_A 352 YTVHNNVDNAEYL-------------DKNGLFVGNHQIELFDEIDYLREVLK 390 (390)
T ss_dssp EEESSCCHHHHHH-------------HHHEEEEECCSSCCHHHHHHHHHHTC
T ss_pred CCCcCCChHHHHH-------------hcCEEEeeCCCCCCHHHHHHHHHhhC
Confidence 1112111111 13789999999999999999999863
No 116
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.93 E-value=6.7e-25 Score=235.71 Aligned_cols=342 Identities=14% Similarity=0.133 Sum_probs=217.6
Q ss_pred CcchHHHHHHHHHhhCCCC--CCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccc
Q 043646 87 GRSLRYIEDYIINNVLPFY--GNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITV 164 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~--~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~ 164 (625)
.+.++.|.+++.+.+...+ ++++...+........+.+.+++++++++|++++ +|+++ +| ++++..++.++
T Consensus 35 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~~-sG-t~a~~~~~~~~---- 107 (417)
T 3n0l_A 35 NFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFA-NVQPN-SG-SQANQGVYAAL---- 107 (417)
T ss_dssp CCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE-ECCCS-SH-HHHHHHHHHHH----
T ss_pred CCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCc-ceEec-cH-HHHHHHHHHHh----
Confidence 3457899999988774433 3333221212233455666788999999999655 57675 78 57788777776
Q ss_pred cchhhhhhhhccCCCCceEEEEcCCCCchhHHH---HHH--cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEE
Q 043646 165 PSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS---WRQ--SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSF 239 (625)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~---~~~--~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~ 239 (625)
+++||+ |+++.++|+++... ... .+..++.++++.++.+|+++|++++++ +++++|++
T Consensus 108 -----------~~~gd~--vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~----~~~~~v~~ 170 (417)
T 3n0l_A 108 -----------INPGDK--ILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKK----EKPKLIVC 170 (417)
T ss_dssp -----------SCTTCE--EEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHH----HCCSEEEE
T ss_pred -----------cCCCCE--EEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHh----cCCeEEEE
Confidence 578886 88999999876542 222 345667777776778999999999984 37899988
Q ss_pred ecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEe-cccccc
Q 043646 240 SACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLIS-KALYQL 318 (625)
Q Consensus 240 ~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~-~~~~~l 318 (625)
++++| |.+.|+++|.++|++||+++|+|++|+.+....+.........|++++|+||+|+||.| |+++++ +++..
T Consensus 171 ~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~- 246 (417)
T 3n0l_A 171 GASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPRG-GIIMTNDEELAK- 246 (417)
T ss_dssp CCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTTTCSEEEEESSTTTCSCSC-EEEEESCHHHHH-
T ss_pred CCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccccceEEEeeCccccCCCCe-eEEEECCHHHHH-
Confidence 87764 99999999999999999999999998765442222111112569999999999988875 999988 45521
Q ss_pred CCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC
Q 043646 319 GSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN 398 (625)
Q Consensus 319 ~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l 398 (625)
.+.+... ....++++...+...+.++......+.+.+.++...+++++.+.|.+
T Consensus 247 -~~~~~~~------------------------~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~- 300 (417)
T 3n0l_A 247 -KINSAIF------------------------PGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD- 300 (417)
T ss_dssp -HHHHHHT------------------------TTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred -HHhhhhC------------------------CcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-
Confidence 1111100 01123444444333222222111234567788888889999999987
Q ss_pred CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHH
Q 043646 399 QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSL 478 (625)
Q Consensus 399 ~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~ 478 (625)
.++++.... ....++.+.+.+ .+++..++.+.|. ++||.++.+..+..+...
T Consensus 301 ~g~~~~~~~--~~~~~~~~~~~~--------------~~~~~~~~~~~l~-~~gi~v~~~~~~~~~~~~----------- 352 (417)
T 3n0l_A 301 RKFKLVSDG--TDNHLVLMSFLD--------------REFSGKDADLALG-NAGITANKNTVPGEIRSP----------- 352 (417)
T ss_dssp TTCEEGGGS--CSSSEEEEECTT--------------SSSCHHHHHHHHH-HTTEECEECCCTTCCSCT-----------
T ss_pred CCceeccCC--CCceEEEEEccc--------------CCCCHHHHHHHHH-HcCeEEeccccCCCCccc-----------
Confidence 578876521 122333332221 1345677888774 589999865433211000
Q ss_pred HHHHHHHhCCCCCCCcEEEEecCC----CCCHHHHHHHHHHHHHHHHh
Q 043646 479 EIRSAIQKGYLGVKPGWTRITFPY----YMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 479 ~~~~~~~~g~~g~~~g~iRis~~~----~~t~edid~ll~aL~~~~~~ 522 (625)
..+..+|++++. ..+++|+++++++|++++.+
T Consensus 353 ------------~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 353 ------------FITSGLRLGTPALTARGFKEKEMEIVSNYIADILDD 388 (417)
T ss_dssp ------------TTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred ------------CCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 023679999753 35799999999999998865
No 117
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.93 E-value=7.5e-25 Score=235.92 Aligned_cols=362 Identities=9% Similarity=-0.045 Sum_probs=236.0
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC--CcEEEeCChHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA--DAIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~--~~vift~sGttaal 153 (625)
..+.|..+... ++|+.+.+++.+.+.... ....|.......++.+.+.+++.+.+|.+.+ ++|++| +|+++++
T Consensus 29 ~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~---~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~-~g~~~a~ 104 (422)
T 3fvs_A 29 DVVNLGQGFPDFPPPDFAVEAFQHAVSGDF---MLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVT-VGGYGAL 104 (422)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHHSCG---GGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEE-SHHHHHH
T ss_pred CceEeCCCCCCCCCCHHHHHHHHHHHhCCC---ccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEE-CChHHHH
Confidence 35555554433 467889999988775311 0001111122345666677777777775432 379998 7899989
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC----C--------CCCCHHHH
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD----N--------GLLDIEAL 221 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~----~--------~~ld~~~L 221 (625)
..++.++ +++||+ |++..+.|+++...++..|++++.++++. + +.+|+++|
T Consensus 105 ~~~~~~~---------------~~~gd~--vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l 167 (422)
T 3fvs_A 105 FTAFQAL---------------VDEGDE--VIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMEL 167 (422)
T ss_dssp HHHHHHH---------------CCTTCE--EEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHH
T ss_pred HHHHHHH---------------cCCCCE--EEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHH
Confidence 9888876 478885 88888999998888888999999999875 3 36899999
Q ss_pred HHHHHHhhhCCCCeEEEEecccCcccccc---CHHHHHHHHHHcCCEEEEeccCcCC----CccccCCCCCC-CCCcEEE
Q 043646 222 RSQLELYKAAKRPMLGSFSACSNVTGIYS---DTRSIARLLHQYGGFACFDFAASGP----YVKINLRSRNI-DGYDAIF 293 (625)
Q Consensus 222 ~~~l~~~~~~~~~~lv~~~~~~n~TG~~~---~l~~I~~la~~~g~~vivD~A~~~g----~~~id~~~~~~-~~~D~v~ 293 (625)
+++++ +++++|++++++||||.+. ++++|+++|++||+++|+|++++.. ..+.++..+.. .+.++++
T Consensus 168 ~~~~~-----~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 242 (422)
T 3fvs_A 168 AGKFT-----SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTI 242 (422)
T ss_dssp HTTCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEE
T ss_pred HhhcC-----CCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEE
Confidence 99887 5799999999999999998 5899999999999999999998752 22233333211 1345888
Q ss_pred EcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHH
Q 043646 294 LATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFW 370 (625)
Q Consensus 294 ~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~ 370 (625)
.|++|++|.|+ ++|++++++++.. .+.. .......+.+..... .+++...
T Consensus 243 ~S~sK~~g~~G~r~G~~~~~~~~~~--~~~~-------------------------~~~~~~~~~~~~~~~a~~~~l~~~ 295 (422)
T 3fvs_A 243 GSAGKTFSATGWKVGWVLGPDHIMK--HLRT-------------------------VHQNSVFHCPTQSQAAVAESFERE 295 (422)
T ss_dssp EEHHHHHTCGGGCCEEEECCHHHHH--HHHH-------------------------HHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred ecchhccCCccceEEEEEeCHHHHH--HHHH-------------------------HHhhccCCCCcHHHHHHHHHHhhc
Confidence 89999997443 4899998887622 1100 000111222222221 2222210
Q ss_pred HH----hhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccc-cCCCCCChHHHHH
Q 043646 371 VK----EYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKI-ERNKPLHGPFVAT 445 (625)
Q Consensus 371 ~~----~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~-~~~~~l~~~~v~~ 445 (625)
.. .....+.+.++.+.+++++.+.|.++ +++++.+. .+.+.+...+...... ... .........++++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 368 (422)
T 3fvs_A 296 QLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPIIPQ----GSYFLITDISDFKRKM--PDLPGAVDEPYDRRFVK 368 (422)
T ss_dssp HHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCS----BSSEEEEECHHHHHHC--CCCCCCTTCCHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCC----eeeEEEEechhhcccc--cccccccccccHHHHHH
Confidence 00 12235678888888999999999987 88877653 3444444332100000 000 0000000346777
Q ss_pred HhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 446 LFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 446 ~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.|.+++||.+.+|..|..+.... ...+++|||++. ++++++.++++|++++++
T Consensus 369 ~ll~~~gv~v~~g~~f~~~~~~~----------------------~~~~~iRis~~~--~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 369 WMIKNKGLVAIPVSIFYSVPHQK----------------------HFDHYIRFCFVK--DEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp HHHHHHCEECEEGGGGSCHHHHT----------------------TSCSEEEEECCC--CHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCEEEeCcHHhcCCcCCC----------------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHhh
Confidence 76677899999998886431110 025899999975 999999999999988754
No 118
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.93 E-value=1.6e-24 Score=231.02 Aligned_cols=350 Identities=15% Similarity=0.065 Sum_probs=226.2
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchh
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIM 168 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (625)
.|+.+.+++.+.+...... . .....++++.+++++|.+ +++++ +|+++++..++.+++
T Consensus 18 ~~~~~~~a~~~~~~~~~~~-------~----~~~~~~l~~~la~~~~~~---~~~~~-~~gt~al~~~~~~~~------- 75 (393)
T 1mdo_A 18 MGAEELAAVKTVLDSGWIT-------T----GPKNQELEAAFCRLTGNQ---YAVAV-SSATAGMHIALMALG------- 75 (393)
T ss_dssp CCHHHHHHHHHHHHHTCCS-------S----SHHHHHHHHHHHHHHCCS---EEEEE-SCHHHHHHHHHHHTT-------
T ss_pred CCHHHHHHHHHHHhcCCcC-------C----ChHHHHHHHHHHHHhCCC---cEEEe-cChHHHHHHHHHHcC-------
Confidence 4567788887777432110 1 134677999999999974 68888 566777888888763
Q ss_pred hhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC-CCCCHHHHHHHHHHhhhCCCCeEEEEecccCccc
Q 043646 169 RDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN-GLLDIEALRSQLELYKAAKRPMLGSFSACSNVTG 247 (625)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~-~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG 247 (625)
+++||+ |+++.++|+++...++..|++++.++++++ +.+|+++|+++++ +++++|+++ |+||
T Consensus 76 -------~~~gd~--Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~-----~~~~~v~~~---~~~G 138 (393)
T 1mdo_A 76 -------IGEGDE--VITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAIT-----PQTKAIIPV---HYAG 138 (393)
T ss_dssp -------CCTTCE--EEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCC-----TTEEEECCB---CGGG
T ss_pred -------CCCCCE--EEeCCCccHhHHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcC-----CCceEEEEe---CCCC
Confidence 467885 999999999999899999999999999874 6899999999987 478888775 4899
Q ss_pred cccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCC-CcEEEEcCC--CCCCCCCCceEEEEe-ccccccCCCCC
Q 043646 248 IYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDG-YDAIFLATH--KFLGGPGTPGILLIS-KALYQLGSSPP 323 (625)
Q Consensus 248 ~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~-~D~v~~S~h--K~lggp~g~G~l~v~-~~~~~l~~~~p 323 (625)
.+.|+++|.++|+++|+++|+|++++.|... +.+.+ + .|++++|+| |+++++. .|+++.+ +++. +.+.+
T Consensus 139 ~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~-~~~~~---~~~d~~~~S~~k~K~l~~~~-~g~~~~~~~~~~--~~l~~ 211 (393)
T 1mdo_A 139 APADLDAIYALGERYGIPVIEDAAHATGTSY-KGRHI---GARGTAIFSFHAIKNITCAE-GGIVVTDNPQFA--DKLRS 211 (393)
T ss_dssp CCCCHHHHHHHHHHHTCCBCEECTTCTTCEE-TTEET---TSSSEEEEECCTTSSSCSSS-CEEEEESCHHHH--HHHHH
T ss_pred CcCCHHHHHHHHHHcCCeEEEECccccCCeE-CCeec---CCCCeEEEeCCCCCcccccc-ceEEEeCCHHHH--HHHHH
Confidence 9999999999999999999999999977543 22333 4 799999999 9997644 5888886 4552 22222
Q ss_pred cccCCceEEeeccccccccccccchhhhh---cCCC----hhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhC
Q 043646 324 STCGGGTVNYVNAFDEKDTLYLEDIEERE---NGGT----PQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRIL 396 (625)
Q Consensus 324 ~~~ggg~v~~~~~~~~~~~~~~~~~~~~~---~~gt----~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~ 396 (625)
...++.... .+.. +.......+ ..|+ +++.+.+ ++.. ..+++.+.++.+++++++.+.|.
T Consensus 212 ~~~~~~~~~---~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~a~--~~~~----l~~~~~~~~~~~~~~~~l~~~L~ 278 (393)
T 1mdo_A 212 LKFHGLGVD---AWDR----QSGGRAPQAEVLAPGYKYNLPDLNAAI--ALAQ----LQKLDALNARRAAIAAQYHQAMA 278 (393)
T ss_dssp HTBTTEECC------------------CCEESSCCCBCCCCHHHHHH--HHHH----HHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCccc---chhh----hcccccccccccccCccCCCCHHHHHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 222222110 0000 000001111 1232 2222211 1111 12356777778889999999999
Q ss_pred CCCcEEEeCCCC--C-CCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC--chhhHhhhc
Q 043646 397 PNQNIQVLGNTS--V-KRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA--GPYGHTLLA 471 (625)
Q Consensus 397 ~l~gv~v~~~~~--~-~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~--~~~~~~~l~ 471 (625)
+++ +++..... . ....++.+.+... ..+.+..++.+.|.+ +||.+++|..|. .++...-..
T Consensus 279 ~~~-~~~~~~~~~~~~~~~~~~~v~~~~~------------~~~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~~~~~ 344 (393)
T 1mdo_A 279 DLP-FQPLSLPSWEHIHAWHLFIIRVDEA------------RCGITRDALMASLKT-KGIGTGLHFRAAHTQKYYRERFP 344 (393)
T ss_dssp TSS-CEECCCCSSCEECCCSCEEEECCHH------------HHSSCHHHHHHHHHH-TTBCCBCCCCCGGGSHHHHHHST
T ss_pred cCC-cccccCCCCCCCceeEEEEEEeccc------------ccccCHHHHHHHHHh-CCCCcccccCccccChhhhccCC
Confidence 886 77764321 1 1122344444210 001246788888865 799999988773 111110000
Q ss_pred -CChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 472 -FDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 472 -~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
-..+...++ ..+++||+++.++|++|+++++++|++++..
T Consensus 345 ~~~~~~~~~~-----------~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~ 385 (393)
T 1mdo_A 345 TLTLPDTEWN-----------SERICSLPLFPDMTESDFDRVITALHQIAGQ 385 (393)
T ss_dssp TCCCHHHHHH-----------HTTEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred ccCChhHHHH-----------HhCEEEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence 000000000 1368999999999999999999999988755
No 119
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.93 E-value=5.8e-25 Score=235.80 Aligned_cols=357 Identities=9% Similarity=-0.022 Sum_probs=230.9
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAA 152 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaa 152 (625)
...++|+++... ++|+.|.+++.+.+... ....|.......++.+.+.+++.+.+|. +++++|++| +|++++
T Consensus 23 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~-~g~~~a 97 (410)
T 3e2y_A 23 PSVVNLGQGFPDISPPSYVKEELSKAAFID----NMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVA-VGAYGS 97 (410)
T ss_dssp TTSEECSSCCCCSCCCHHHHHHHHHHHTCG----GGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEE-SHHHHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhCc----cccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEe-CCcHHH
Confidence 457888887765 46789999998887531 0001111111244555555566555554 342489998 788888
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-----------CCCCCHHHH
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-----------NGLLDIEAL 221 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-----------~~~ld~~~L 221 (625)
+..++.++ +++||+ |++..+.|+++...++..|++++.++++. ++.+|+++|
T Consensus 98 ~~~~~~~~---------------~~~gd~--vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l 160 (410)
T 3e2y_A 98 LFNSIQGL---------------VDPGDE--VIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPREL 160 (410)
T ss_dssp HHHHHHHH---------------CCTTCE--EEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHH
T ss_pred HHHHHHHh---------------cCCCCE--EEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHH
Confidence 99888877 478885 88888999999888888999999998862 346899999
Q ss_pred HHHHHHhhhCCCCeEEEEecccCcccccc---CHHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCC-CCCCcEEE
Q 043646 222 RSQLELYKAAKRPMLGSFSACSNVTGIYS---DTRSIARLLHQYGGFACFDFAASGPY----VKINLRSRN-IDGYDAIF 293 (625)
Q Consensus 222 ~~~l~~~~~~~~~~lv~~~~~~n~TG~~~---~l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~-~~~~D~v~ 293 (625)
+++++ +++++|++++++||||.+. ++++|+++|++||+++|+|++++... ...++..+. ..+.++++
T Consensus 161 ~~~~~-----~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 235 (410)
T 3e2y_A 161 ESKFS-----SKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITI 235 (410)
T ss_dssp HTTCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEE
T ss_pred HhhcC-----CCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEE
Confidence 99886 5799999999999999994 68899999999999999999987422 222232221 11345788
Q ss_pred EcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHH
Q 043646 294 LATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFW 370 (625)
Q Consensus 294 ~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~ 370 (625)
.|++|++|.| .++|++++++++.. .+.. .......+++..... .+++.-.
T Consensus 236 ~S~sK~~g~~G~r~G~~~~~~~~~~--~~~~-------------------------~~~~~~~~~~~~~~~a~~~~l~~~ 288 (410)
T 3e2y_A 236 GSAGKTFSVTGWKLGWSIGPAHLIK--HLQT-------------------------VQQNSFYTCATPLQAALAEAFWID 288 (410)
T ss_dssp EEHHHHSSCGGGCCEEEECCHHHHH--HHHH-------------------------HHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred ecchhhcCCCCceEEEEEECHHHHH--HHHH-------------------------HHHhhccCCChHHHHHHHHHHHhh
Confidence 8999999734 34899998887632 1100 001111222222221 2222210
Q ss_pred H----HhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHH
Q 043646 371 V----KEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATL 446 (625)
Q Consensus 371 ~----~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ 446 (625)
. ......+.+.++.+.+++++.+.|.++ ++++..+. .+.+.+.......... ........+..++++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 360 (410)
T 3e2y_A 289 IKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-GLKPIVPD----GGYFIIADVSSLGADL---SDMNSDEPYDYKFVKW 360 (410)
T ss_dssp HTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCS----BSSEEEEECGGGCCCC---TTCCSSCCHHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCC----ccEEEEEEchhhhccc---ccccccccCHHHHHHH
Confidence 0 012235677888888899999999887 88877653 3445444333210000 0000000112367776
Q ss_pred hhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 447 FNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 447 L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
|.+++||.+.+|..|..+..... ..+++|||++. +++++++++++|++
T Consensus 361 ll~~~gv~v~~g~~f~~~~~~~~----------------------~~~~iRis~~~--~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 361 MTKHKKLTAIPVSAFCDSKSKPH----------------------FEKLVRFCFIK--KDSTLDAAEEIFRA 408 (410)
T ss_dssp HHHHHSEECEEGGGGSCTTTHHH----------------------HTTEEEEECCC--CHHHHHHHHHHHHT
T ss_pred HHHHcCEEEeCchhhCCCCCCCC----------------------CCCEEEEEEcC--CHHHHHHHHHHHHh
Confidence 66778999999988753210000 14899999875 99999999999874
No 120
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.93 E-value=2.2e-24 Score=227.32 Aligned_cols=286 Identities=15% Similarity=0.042 Sum_probs=202.1
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCC-CceEEEEcCCCCchhHHHHHHc
Q 043646 123 VHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDE-ERWVVFLGPYEHHSNLLSWRQS 201 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~h~s~~~~~~~~ 201 (625)
..++++.+++++|++++ +|++| +|+++++..++.++ +++| |+ |+++.++|+++...++..
T Consensus 60 ~~~lr~~la~~~~~~~~-~v~~~-~G~~~ai~~~~~~~---------------~~~g~d~--Vl~~~p~~~~~~~~~~~~ 120 (356)
T 1fg7_A 60 PKAVIENYAQYAGVKPE-QVLVS-RGADEGIELLIRAF---------------CEPGKDA--ILYCPPTYGMYSVSAETI 120 (356)
T ss_dssp CHHHHHHHHHHHTSCGG-GEEEE-SHHHHHHHHHHHHH---------------CCTTTCE--EEECSSSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChH-HEEEc-CCHHHHHHHHHHHH---------------hCCCCCE--EEEeCCChHHHHHHHHHc
Confidence 35689999999998766 89998 89999999998887 4678 75 999999999998888889
Q ss_pred CCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHH--cCCEEEEeccCcCCCccc
Q 043646 202 LAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYVKI 279 (625)
Q Consensus 202 G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~--~g~~vivD~A~~~g~~~i 279 (625)
|++++.++.+.++.+|+++|+++++ ++++|++++++||||.+.|.++|.++++. +|+++++|++++......
T Consensus 121 g~~~~~v~~~~~~~~d~~~l~~~i~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~ 194 (356)
T 1fg7_A 121 GVECRTVPTLDNWQLDLQGISDKLD------GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQA 194 (356)
T ss_dssp TCEEEECCCCTTSCCCHHHHHTSCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGG
T ss_pred CCEEEEeeCCCCCCCCHHHHHHHhc------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCCEEEEEccchhhcCCC
Confidence 9999999988777899999987764 58999999999999999886655544443 899999999987543222
Q ss_pred cCCCC-CCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCCh
Q 043646 280 NLRSR-NIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTP 357 (625)
Q Consensus 280 d~~~~-~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~ 357 (625)
++..+ ...+.++++.|++|++|.|+ .+|++++++++.. .+.+.. ...+.
T Consensus 195 ~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~--~l~~~~---------------------------~~~~~ 245 (356)
T 1fg7_A 195 SLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVIN--LLMKVI---------------------------APYPL 245 (356)
T ss_dssp CSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHH--HHHHHS---------------------------CSSCS
T ss_pred cHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHHHH--HHHHhc---------------------------CCCCC
Confidence 22111 11245788899999997443 3799999887622 111000 00122
Q ss_pred hHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccC
Q 043646 358 QIVQMIRAALAFWVKEYIG---YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIER 434 (625)
Q Consensus 358 ~~~~~~~aal~~~~~~~~g---~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~ 434 (625)
+.... .++.+.+ +..+ .+.+.++.+.+++++.+.|.+++++....+. .+.++ +...+
T Consensus 246 ~~~~~-~a~~~~l--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~---~~~~~-~~~~~------------- 305 (356)
T 1fg7_A 246 STPVA-DIAAQAL--SPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDS---ETNYI-LARFK------------- 305 (356)
T ss_dssp CHHHH-HHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCC---SSSEE-EEEET-------------
T ss_pred CHHHH-HHHHHHh--cCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCC---CCeEE-EEECC-------------
Confidence 32222 1222222 1222 5567777888899999999888765333332 23333 33322
Q ss_pred CCCCChHHHHHHhhhhcCeeeec-CCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHH
Q 043646 435 NKPLHGPFVATLFNDLFGIQARG-GCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFIL 513 (625)
Q Consensus 435 ~~~l~~~~v~~~L~~~~gI~v~~-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll 513 (625)
+..++.+.| .++||.+++ |..|+ .++++|||++ +++|+++++
T Consensus 306 ----~~~~l~~~L-~~~gI~v~~~g~~~~-----------------------------~~~~iRis~~---~~~e~~~~~ 348 (356)
T 1fg7_A 306 ----ASSAVFKSL-WDQGIILRDQNKQPS-----------------------------LSGCLRITVG---TREESQRVI 348 (356)
T ss_dssp ----THHHHHHHH-HHTTEECEECTTSTT-----------------------------CTTEEEEECC---CHHHHHHHH
T ss_pred ----CHHHHHHHH-HHCCEEEEECCCCCC-----------------------------CCCeEEEEeC---CHHHHHHHH
Confidence 255788888 458999998 77664 1378999997 789999999
Q ss_pred HHHHHH
Q 043646 514 AALEFI 519 (625)
Q Consensus 514 ~aL~~~ 519 (625)
++|+++
T Consensus 349 ~~l~~~ 354 (356)
T 1fg7_A 349 DALRAE 354 (356)
T ss_dssp HHHHTC
T ss_pred HHHHhh
Confidence 999753
No 121
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.93 E-value=6.9e-24 Score=229.62 Aligned_cols=310 Identities=15% Similarity=0.118 Sum_probs=210.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
+++......+++++++++++|.+ + .++|+ +|+ +++..++.++ +++||+ |+++...|++.
T Consensus 108 y~r~~~~~~~~l~~~lA~l~g~~-~-~v~~~-sG~-~Ai~~al~~l---------------~~~Gd~--Vi~~~~~y~~~ 166 (445)
T 1qgn_A 108 YGRYGNPTTVVLEEKISALEGAE-S-TLLMA-SGM-CASTVMLLAL---------------VPAGGH--IVTTTDCYRKT 166 (445)
T ss_dssp BGGGCCHHHHHHHHHHHHHHTCS-E-EEEES-CHH-HHHHHHHHHH---------------SCSSCE--EEEETTSCHHH
T ss_pred ccCCCChHHHHHHHHHHHHhCCC-c-EEEeC-CHH-HHHHHHHHHH---------------hCCCCE--EEEcCCCchhH
Confidence 44444567888999999999985 3 56665 888 7788887766 478885 88888999887
Q ss_pred HHHH----HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC-eEEEEecccCccccccCHHHHHHHHHHcCCEEEEe
Q 043646 195 LLSW----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP-MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFD 269 (625)
Q Consensus 195 ~~~~----~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~-~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD 269 (625)
...+ +..|++++.++.+ |+++|+++|+ +++ ++|++++++||||.+.|+++|+++||++|+++|+|
T Consensus 167 ~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~ai~-----~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD 236 (445)
T 1qgn_A 167 RIFIETILPKMGITATVIDPA-----DVGALELALN-----QKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCID 236 (445)
T ss_dssp HHHHHHTGGGGTCEEEEECSS-----CHHHHHHHHH-----HSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCCEEEEeCCC-----CHHHHHHHhc-----cCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEE
Confidence 6543 3469999999875 8999999998 468 99999999999999999999999999999999999
Q ss_pred ccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCC--CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccc
Q 043646 270 FAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPG--TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLED 347 (625)
Q Consensus 270 ~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~--g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (625)
++++.++....+ .+ ++|+++.|+||++|+++ ..|++++++++. ..+.+
T Consensus 237 ~a~~~~~~~~~~-~~---g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~--~~l~~------------------------ 286 (445)
T 1qgn_A 237 GTFATPLNQKAL-AL---GADLVLHSATKFLGGHNDVLAGCISGPLKLV--SEIRN------------------------ 286 (445)
T ss_dssp CTTTCTTTCCTT-TT---TCSEEEECTTTTTTCSSSCCCEEEEECHHHH--HHHHH------------------------
T ss_pred CCCcccccCCcc-cc---CCEEEEECCcccccccccceEEEEEECHHHH--HHHHH------------------------
Confidence 999877643222 23 78999999999998554 279999988762 11110
Q ss_pred hhhhhcCCChhHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcE-EEeCCCC-------------CCC
Q 043646 348 IEERENGGTPQIVQM--IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNI-QVLGNTS-------------VKR 411 (625)
Q Consensus 348 ~~~~~~~gt~~~~~~--~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv-~v~~~~~-------------~~~ 411 (625)
..+...++++.... +..+++. .....++....++++.+.|.+.|++ +++.|.- ...
T Consensus 287 -~~~~~g~~~~~~~a~~~~~~l~~-------l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~ 358 (445)
T 1qgn_A 287 -LHHILGGALNPNAAYLIIRGMKT-------LHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGF 358 (445)
T ss_dssp -HHHHHCCCCCHHHHHHHHHHGGG-------HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCC
T ss_pred -HHHHhCCCCCHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCC
Confidence 00111222332221 1112211 2222334444588888999888888 5665521 125
Q ss_pred cceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCC
Q 043646 412 QAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGY 488 (625)
Q Consensus 412 ~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~ 488 (625)
+++++|.+.... -....+.+.| +.++|.++.|..|+. |....+..+..+... .
T Consensus 359 g~ivsf~l~~~~--------------~~~~~~l~~l-~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~---------~ 414 (445)
T 1qgn_A 359 GGAVSFEVDGDL--------------LTTAKFVDAL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRA---------K 414 (445)
T ss_dssp CSEEEEEESSCH--------------HHHHHHHHHC-SSSEECSCCCSSSCEEECHHHHHSTTSCHHHHH---------T
T ss_pred CcEEEEEECCCH--------------HHHHHHHHhC-CCceEeccCCCCceeeecccccccccCCHHHHH---------h
Confidence 788888874310 0123455555 346899999999863 211111111111000 1
Q ss_pred CCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 489 LGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 489 ~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.|+.++.||||++ .||++.+++.|+++++
T Consensus 415 ~g~~~~~iRlSvG----~Edid~li~~L~~al~ 443 (445)
T 1qgn_A 415 YGIMDNLVRFSFG----VEDFDDLKADILQALD 443 (445)
T ss_dssp TTCCSSEEEEECC----SSCHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEec----cCCHHHHHHHHHHHHh
Confidence 2445689999998 3789999999998875
No 122
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.93 E-value=2e-24 Score=228.93 Aligned_cols=297 Identities=13% Similarity=0.041 Sum_probs=211.6
Q ss_pred HHHHHHHHHHhC-CCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC
Q 043646 124 HEASNYIKRCLG-GGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL 202 (625)
Q Consensus 124 ~~~~~~ia~~~g-~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G 202 (625)
.++++.++++++ .+++ ++++| +|+++++..++.++ +++||+ |+++.+.|++....++..|
T Consensus 66 ~~l~~~la~~~~~~~~~-~v~~~-~g~~~a~~~~~~~l---------------~~~gd~--Vl~~~~~~~~~~~~~~~~g 126 (375)
T 3op7_A 66 PAFKKSVSQLYTGVKPE-QILQT-NGATGANLLVLYSL---------------IEPGDH--VISLYPTYQQLYDIPKSLG 126 (375)
T ss_dssp HHHHHHHHTTSSSCCGG-GEEEE-SHHHHHHHHHHHHH---------------CCTTCE--EEEEESSCTHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCChh-hEEEc-CChHHHHHHHHHHh---------------cCCCCE--EEEeCCCchhHHHHHHHcC
Confidence 458888999884 5555 89998 78888898888877 578885 9999999999888888899
Q ss_pred CeEEEEecCC--CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc
Q 043646 203 AEVVEIGLDD--NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV 277 (625)
Q Consensus 203 ~~vv~v~~~~--~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~ 277 (625)
++++.++++. ++.+|+++|+++++ +++++|++++++||||.+.| +++|.++|++||+++|+|++++....
T Consensus 127 ~~~~~v~~~~~~~~~~d~~~l~~~l~-----~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~ 201 (375)
T 3op7_A 127 AEVDLWQIEEENGWLPDLEKLRQLIR-----PTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSE 201 (375)
T ss_dssp CEEEEEEEEGGGTTEECHHHHHHHCC-----TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSS
T ss_pred CEEEEEeccccCCCCCCHHHHHHhhc-----cCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence 9999999874 34589999999997 58999999999999999999 99999999999999999999875433
Q ss_pred cccCCCC-CCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCC
Q 043646 278 KINLRSR-NIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGG 355 (625)
Q Consensus 278 ~id~~~~-~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~g 355 (625)
. ..... ...+.++++.|++|+++.|+ .+|++++++++.. .+.... .....+
T Consensus 202 ~-~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~--~~~~~~------------------------~~~~~~ 254 (375)
T 3op7_A 202 L-DVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTD--ILRDYR------------------------DYTMIC 254 (375)
T ss_dssp S-CCCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHH--HHTTTG------------------------GGTTSC
T ss_pred c-CCCchhhhcCCEEEEeEChhhcCCcccceEEEEeCHHHHH--HHHHHH------------------------hhhccC
Confidence 2 11110 11245688889999997443 3699998777632 221111 001112
Q ss_pred ChhHHHHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccC
Q 043646 356 TPQIVQMI-RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIER 434 (625)
Q Consensus 356 t~~~~~~~-~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~ 434 (625)
++.+...+ .+++... ....+.++++.+.+++++.+.|.+.+++.+..+. .+.+.|...+.
T Consensus 255 ~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~~~~~~~~~~------------ 315 (375)
T 3op7_A 255 AGVFDDLVAQLALAHY---QEILERNRHILEENLAILDQWIEEEPLVSYIRPA----VVSTSFVKIAV------------ 315 (375)
T ss_dssp CCHHHHHHHHHHHHTH---HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCS----SSSCEEEEECC------------
T ss_pred CCcHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCC----CeEEEeEEcCC------------
Confidence 22222221 1222211 1224556666677888899999888899887653 23334444332
Q ss_pred CCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHH
Q 043646 435 NKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILA 514 (625)
Q Consensus 435 ~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~ 514 (625)
+.+..++++.|.+++||.+++|..|. .++++||+++. +.++++.+++
T Consensus 316 --~~~~~~~~~~ll~~~gi~v~~g~~~~-----------------------------~~~~iRi~~~~--~~~~i~~~l~ 362 (375)
T 3op7_A 316 --DMPMEDFCLQLLQEHGVLLVPGNRFE-----------------------------RDGYVRLGFAC--EQETLIKGLE 362 (375)
T ss_dssp --SSCHHHHHHHHHHHHCEECEEGGGGT-----------------------------CTTEEEECCCS--CHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHhCCEEEeChhhhC-----------------------------CCCeEEEEecC--CHHHHHHHHH
Confidence 13466788887666899999887654 14899999874 4599999999
Q ss_pred HHHHHHHhh
Q 043646 515 ALEFIAAYG 523 (625)
Q Consensus 515 aL~~~~~~~ 523 (625)
+|++++++.
T Consensus 363 ~l~~~l~~~ 371 (375)
T 3op7_A 363 KLSQFLRRF 371 (375)
T ss_dssp HHHHHHGGG
T ss_pred HHHHHHHHH
Confidence 999988754
No 123
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.93 E-value=2e-24 Score=228.86 Aligned_cols=332 Identities=13% Similarity=0.023 Sum_probs=223.1
Q ss_pred eEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHH
Q 043646 78 LTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 78 ~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaal~ 154 (625)
.+.|..+... +.|+.+.+++.+.+......+. .....++.+++.+++++.+|. +++ +|++| +|+++++.
T Consensus 25 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~------~~g~~~lr~~la~~l~~~~g~~~~~~-~i~~t-~g~~~al~ 96 (376)
T 3ezs_A 25 GLDLGIGEPQFETPKFIQDALKNHTHSLNIYPK------SAFEESLRAAQRGFFKRRFKIELKEN-ELIST-LGSREVLF 96 (376)
T ss_dssp CCBCSSCCCCSCCCHHHHHHHHTTGGGGGSCCC------TTCCHHHHHHHHHHHHHHHSCCCCGG-GEEEE-SSSHHHHH
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHhhhhcCCCCC------CCCCHHHHHHHHHHHHHHhCCCCCHH-HEEEC-cCcHHHHH
Confidence 4445444332 3568899998876632211111 112345667777777777787 444 89998 78888899
Q ss_pred HHHHHhcccccchhhhhhhhccCC--CCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRD--EERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~--gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~ 232 (625)
.++.++ .++ ||+ |++..+.|+++...++..|++++.++++.++.+++ +|++++. +
T Consensus 97 ~~~~~~---------------~~~~~gd~--vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~l~~~~~-----~ 153 (376)
T 3ezs_A 97 NFPSFV---------------LFDYQNPT--IAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDFTP-SLNEKEL-----Q 153 (376)
T ss_dssp HHHHHH---------------TTTCSSCE--EEEEESCCTHHHHHHHHTTCEEEEEECCGGGTSCC-CCCHHHH-----H
T ss_pred HHHHHH---------------cCCCCCCE--EEEecCCcHhHHHHHHHcCCEEEEcccCCCCCcch-hHHhhhc-----c
Confidence 888877 467 775 89999999999888899999999999987644555 6777776 3
Q ss_pred CCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc---cccCCCC-C-----CCCCcEEEEcCCCCC
Q 043646 233 RPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---KINLRSR-N-----IDGYDAIFLATHKFL 300 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~---~id~~~~-~-----~~~~D~v~~S~hK~l 300 (625)
++++|++++++||||.+.| +++|+++|++||+++|+|++++.... +..+... . ..+.++++.|++|++
T Consensus 154 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 233 (376)
T 3ezs_A 154 EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRS 233 (376)
T ss_dssp HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTT
T ss_pred CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhcc
Confidence 6899999999999999987 56777889999999999999885332 1111100 0 125678899999999
Q ss_pred CCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHH
Q 043646 301 GGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEV 379 (625)
Q Consensus 301 ggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~ 379 (625)
|.|+ ++|+++.++++.. .+.. .......+++......+ .+.+ ......+.
T Consensus 234 g~~G~r~G~~~~~~~~~~--~~~~-------------------------~~~~~~~~~~~~~~~a~-~~~l-~~~~~~~~ 284 (376)
T 3ezs_A 234 SAPGLRSGFIAGDSRLLE--KYKA-------------------------FRAYLGYTSANAIQKAS-EAAW-LDDRHAEF 284 (376)
T ss_dssp TCGGGCCEEEEECHHHHH--HHHH-------------------------HHTTTCCCCCHHHHHHH-HHHH-HCSHHHHH
T ss_pred CCccceeEEEeeCHHHHH--HHHH-------------------------HHhhhcCCCChHHHHHH-HHHH-hCcHHHHH
Confidence 7443 4799998877622 1100 00011123333332221 2222 12223567
Q ss_pred HHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCC
Q 043646 380 IKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGC 459 (625)
Q Consensus 380 i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~ 459 (625)
+.++.+.+++++.+.|. ++. .+ ..+.+.+...+ +..++++.|.+++||.+++|.
T Consensus 285 ~~~~~~~~~~~l~~~l~---~~~--~~----~~~~~~~~~~~-----------------~~~~~~~~l~~~~gi~v~~g~ 338 (376)
T 3ezs_A 285 FRNIYANNLKLARKIFK---NTL--IY----PYSFYVYLPVQ-----------------NGENFAKTLYQNEGIITLPAL 338 (376)
T ss_dssp HHHHHHHHHHHHHHHST---TCC--CC----SBSSEEEEECS-----------------CHHHHHHHHHHHHCCBCEEGG
T ss_pred HHHHHHHHHHHHHHHhc---CCC--CC----CcceEEEEECC-----------------CHHHHHHHHHHhCCEEEeCcH
Confidence 77888888889999887 333 22 23444443332 256788888665899999998
Q ss_pred CCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 460 ACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 460 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.|+.+. ..++++||+++. +++|+++++++|++++++
T Consensus 339 ~~~~~~-------------------------~~~~~iRis~~~--~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 339 YLGRNR-------------------------IGADYVRLALVY--DTPLLEKPLEIIETYREN 374 (376)
T ss_dssp GGCSTT-------------------------TTTTEEEEECCS--CHHHHHHHHHHHHHHHCC
T ss_pred HhCCCC-------------------------CCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 776210 025899999974 999999999999988754
No 124
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.93 E-value=1.8e-24 Score=232.23 Aligned_cols=161 Identities=14% Similarity=0.119 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH---
Q 043646 120 TKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL--- 196 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~--- 196 (625)
....+++++++++++|.+ +++++++|+ +++..++.++ +++||+ |+++.+.|+++..
T Consensus 61 ~~~~~~l~~~ia~~~g~~---~~i~~~~g~-~ai~~~~~~l---------------~~~gd~--Vl~~~~~y~~~~~~~~ 119 (404)
T 1e5e_A 61 NPTVSNLEGKIAFLEKTE---ACVATSSGM-GAIAATVLTI---------------LKAGDH--LISDECLYGCTHALFE 119 (404)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHH-HHHHHHHHHH---------------CCTTCE--EEEESCCCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCC---cEEEeCChH-HHHHHHHHHH---------------hCCCCE--EEEeCCCchhHHHHHH
Confidence 456778999999999985 345554665 7788887776 478885 9999999999887
Q ss_pred -HHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHH-cCCEEEEeccCcC
Q 043646 197 -SWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQ-YGGFACFDFAASG 274 (625)
Q Consensus 197 -~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~-~g~~vivD~A~~~ 274 (625)
.++..|++++.++.+ |+++|+++++ +++++|++++++||||.+.|+++|+++|++ +|+++++|++++.
T Consensus 120 ~~~~~~g~~~~~v~~~-----d~~~l~~~i~-----~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~ 189 (404)
T 1e5e_A 120 HALTKFGIQVDFINTA-----IPGEVKKHMK-----PNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCS 189 (404)
T ss_dssp THHHHTTCEEEEECTT-----STTHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTC
T ss_pred HHHHHcCCEEEEECCC-----CHHHHHHhcC-----CCCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCch
Confidence 456679999999876 7889999887 579999999999999999999999999999 9999999999997
Q ss_pred CCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccc
Q 043646 275 PYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKAL 315 (625)
Q Consensus 275 g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~ 315 (625)
+.....+ .+ +.|+++.|+||+|++|++ .|+++++++.
T Consensus 190 ~~~~~~~-~~---~~di~~~S~sK~~~~~g~ri~G~~~~~~~~ 228 (404)
T 1e5e_A 190 PMITNPV-DF---GVDVVVHSATKYINGHTDVVAGLICGKADL 228 (404)
T ss_dssp TTTCCGG-GG---TCSEEEEETTTTTTCSSCCCCEEEEECHHH
T ss_pred hhhCCcc-cc---CCEEEEEcCccccCCCCCCeEEEEEECHHH
Confidence 7643222 23 789999999999998886 5999999876
No 125
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.93 E-value=4.6e-24 Score=231.07 Aligned_cols=360 Identities=13% Similarity=0.040 Sum_probs=228.6
Q ss_pred ceEeccCCCCCcchHHHHHHHHHhhCCCCCCC-CCCcch--hhHHHHHHHHHHHHHHHHHhC--------CCCCCcEEEe
Q 043646 77 RLTYADHTASGRSLRYIEDYIINNVLPFYGNT-HTSDSY--VGQRMTKMVHEASNYIKRCLG--------GGQADAIIFC 145 (625)
Q Consensus 77 ~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~-~~~~~~--~~~~~~~~~~~~~~~ia~~~g--------~~~~~~vift 145 (625)
..+.|..+......+.+.+++.+........+ +..... .++....-..++++.++++++ ++++ +|++|
T Consensus 39 ~~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~-~v~~~ 117 (435)
T 3piu_A 39 GIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPN-HLVLT 117 (435)
T ss_dssp SBEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGG-GEEEE
T ss_pred CeEEeccccccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHH-HEEEc
Confidence 46788888888888888888876543211000 000000 000001112456666666666 4455 89998
Q ss_pred CChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH-HcCCeEEEEecCCC--CCCCHHHHH
Q 043646 146 GAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR-QSLAEVVEIGLDDN--GLLDIEALR 222 (625)
Q Consensus 146 ~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~-~~G~~vv~v~~~~~--~~ld~~~L~ 222 (625)
+|+++++..++.++ +++||. |+++.+.|+++...++ ..|++++.++.+.+ ..+|+++|+
T Consensus 118 -~gg~~a~~~~~~~l---------------~~~gd~--vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~ 179 (435)
T 3piu_A 118 -AGATSANETFIFCL---------------ADPGEA--VLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALE 179 (435)
T ss_dssp -EHHHHHHHHHHHHH---------------CCTTCE--EEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHH
T ss_pred -CChHHHHHHHHHHh---------------cCCCCe--EEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHH
Confidence 78888898888877 478885 9999999999987777 68999999998863 468999999
Q ss_pred HHHHHhhh-CCCCeEEEEecccCccccccCH---HHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCCC--------
Q 043646 223 SQLELYKA-AKRPMLGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPYV----KINLRSRNI-------- 286 (625)
Q Consensus 223 ~~l~~~~~-~~~~~lv~~~~~~n~TG~~~~l---~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~~-------- 286 (625)
+++++... ..++++|++++++||||.+.+. ++|+++|++||+++|+|++|+.+.. ...+..+..
T Consensus 180 ~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~ 259 (435)
T 3piu_A 180 EAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENS 259 (435)
T ss_dssp HHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------
T ss_pred HHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhcccccccccc
Confidence 99985221 2378999999999999999775 7888899999999999999875221 111111100
Q ss_pred --CCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH-
Q 043646 287 --DGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM- 362 (625)
Q Consensus 287 --~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~- 362 (625)
...++++.|++|+||.|+ .+|+++++++.. ...+.. ...+ .+.++..+.
T Consensus 260 ~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~-~~~~~~-------------------------~~~~-~~~~~~~~~~ 312 (435)
T 3piu_A 260 EVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMV-VAAATK-------------------------MSSF-GLVSSQTQHL 312 (435)
T ss_dssp CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHH-HHHHHH-------------------------HGGG-SCCCHHHHHH
T ss_pred CCCCCEEEEEeeecccCCCceeEEEEEeCCHHH-HHHHHH-------------------------Hhhc-CCCCHHHHHH
Confidence 012378889999997443 479999854431 111100 0001 111222221
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHH
Q 043646 363 IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPF 442 (625)
Q Consensus 363 ~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~ 442 (625)
+.+++.-...-....+..+++.+++++++.+.|.++ +++++.+. .+.+.+...+.... ........+
T Consensus 313 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~----~g~~~~~~l~~~~~--------~~~~~~~~~ 379 (435)
T 3piu_A 313 LSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCLNGN----AGLFCWVDMRHLLR--------SNTFEAEME 379 (435)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECCCC----SSSEEEEECGGGSS--------SSSHHHHHH
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCC----eeEEEEEEcccccc--------cCCchhHHH
Confidence 122221110001123456677788888999999887 78877553 33444444432100 000002346
Q ss_pred HHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 443 VATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 443 v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+++.|.+++||.+++|..|... .++++||+++.. ++++++.++++|++++++
T Consensus 380 ~~~~l~~~~gi~v~~g~~~~~~---------------------------~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~ 431 (435)
T 3piu_A 380 LWKKIVYEVHLNISPGSSCHCT---------------------------EPGWFRVCFANL-PERTLDLAMQRLKAFVGE 431 (435)
T ss_dssp HHHHHHHTSCEECEEGGGGTCS---------------------------STTEEEEECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEeCCcccCCC---------------------------CCCEEEEEeeCC-CHHHHHHHHHHHHHHHHH
Confidence 7788877779999988766411 258999999766 999999999999998876
Q ss_pred h
Q 043646 523 G 523 (625)
Q Consensus 523 ~ 523 (625)
.
T Consensus 432 ~ 432 (435)
T 3piu_A 432 Y 432 (435)
T ss_dssp H
T ss_pred H
Confidence 4
No 126
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.93 E-value=8.4e-25 Score=235.03 Aligned_cols=341 Identities=14% Similarity=0.137 Sum_probs=211.3
Q ss_pred cchHHHHHHHHHhhCCCC--CCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccccc
Q 043646 88 RSLRYIEDYIINNVLPFY--GNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVP 165 (625)
Q Consensus 88 ~~p~~v~ea~~~~l~~~~--~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~ 165 (625)
..++.|.+++.+.+...+ ++++...+..........+.+++++++++|++++ .++++ +|+. ++..++.++
T Consensus 41 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~v~~~-sGs~-a~~~a~~~~----- 112 (420)
T 3gbx_A 41 YTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYA-NVQPH-SGSQ-ANFAVYTAL----- 112 (420)
T ss_dssp CCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEE-ECCCS-SHHH-HHHHHHHHH-----
T ss_pred CCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCc-eeEec-CcHH-HHHHHHHHh-----
Confidence 368899999988874433 4554322211222234556677999999999655 55565 7854 666666665
Q ss_pred chhhhhhhhccCCCCceEEEEcCCCCchhHHHH---HH--cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEe
Q 043646 166 SIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW---RQ--SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFS 240 (625)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~---~~--~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~ 240 (625)
+++||. |+++.++|.++...+ .. .+..++.++.+.++.+|+++|++++++ .++++|+++
T Consensus 113 ----------~~~gd~--v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~----~~~~~v~~~ 176 (420)
T 3gbx_A 113 ----------LQPGDT--VLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKE----HKPKMIIGG 176 (420)
T ss_dssp ----------CCTTCE--EEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHH----HCCSEEEEC
T ss_pred ----------cCCCCE--EEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHh----cCCeEEEEe
Confidence 478885 888888998854221 22 234566667777788999999999985 368999998
Q ss_pred cccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEec---cccc
Q 043646 241 ACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISK---ALYQ 317 (625)
Q Consensus 241 ~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~---~~~~ 317 (625)
+++|+ ...|+++|.++|++||+++|+|++|+.+....+........+|+++.|+||+++||.| |+++.++ .+..
T Consensus 177 ~~~~~--~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~~~ 253 (420)
T 3gbx_A 177 FSAYS--GVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRG-GLILAKGGDEELYK 253 (420)
T ss_dssp CTTCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTTTSSEEEEESSGGGCSCSC-EEEEESSCCHHHHH
T ss_pred cCccC--CccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccccCCEEEeecccCCCCCCc-eEEEEcCCcHHHHH
Confidence 87774 5889999999999999999999998755432211111112579999999999988886 9988887 4411
Q ss_pred cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC
Q 043646 318 LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP 397 (625)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~ 397 (625)
.+.+... ....++++......++.++......+.+.+.++...+++++.+.|.+
T Consensus 254 --~~~~~~~------------------------~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 307 (420)
T 3gbx_A 254 --KLNSAVF------------------------PSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLN 307 (420)
T ss_dssp --HHHHHHC----------------------------CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HhhhhcC------------------------CCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Confidence 1110000 00123444444433333332111234567788888889999999987
Q ss_pred CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhH
Q 043646 398 NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRS 477 (625)
Q Consensus 398 l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~ 477 (625)
.+++++.+. ....++.+.+.+. +++...+.+.| +++||.++++..+... +..
T Consensus 308 -~g~~~~~~~--~~~~~~~~~~~~~--------------~~~~~~~~~~l-~~~gi~v~~~~~~~~~-~~~--------- 359 (420)
T 3gbx_A 308 -RGYKVVSGG--TENHLFLLDLVDK--------------NLTGKEADAAL-GRANITVNKNSVPNDP-KSP--------- 359 (420)
T ss_dssp -TTCEEGGGS--CSSSEEEEECGGG--------------TCCHHHHHHHH-HHTTEECEEECCTTCS-SCT---------
T ss_pred -cCCeeccCC--CCCeEEEEEcCCC--------------CCCHHHHHHHH-HHCCcEeccccCCCCc-ccc---------
Confidence 478876531 1334444443321 23466777777 5579999873222100 000
Q ss_pred HHHHHHHHhCCCCCCCcEEEEecCCC----CCHHHHHHHHHHHHHHHHh
Q 043646 478 LEIRSAIQKGYLGVKPGWTRITFPYY----MSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 478 ~~~~~~~~~g~~g~~~g~iRis~~~~----~t~edid~ll~aL~~~~~~ 522 (625)
..+..+||+++.. .+++|+++++++|++++.+
T Consensus 360 -------------~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 360 -------------FVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp -------------TTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred -------------CCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence 0135599998654 4689999999999998766
No 127
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.93 E-value=7.5e-25 Score=234.60 Aligned_cols=351 Identities=13% Similarity=0.037 Sum_probs=225.4
Q ss_pred EeccCCCCCc-chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 043646 79 TYADHTASGR-SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQ 157 (625)
Q Consensus 79 ~Yld~~~~~~-~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (625)
-|+|.+...+ .++.+.+++.+.+... .+..+ ....++++.+++++|.+ +++++++| ++++..++
T Consensus 31 ~~id~~~~~~~~~~~v~~a~~~~~~~~-------~y~~~----~~~~~l~~~la~~~~~~---~~v~~~~G-t~a~~~~l 95 (399)
T 2oga_A 31 PFLDLKAAYEELRAETDAAIARVLDSG-------RYLLG----PELEGFEAEFAAYCETD---HAVGVNSG-MDALQLAL 95 (399)
T ss_dssp CSCCHHHHHHHTHHHHHHHHHHHHHHT-------CCSSS----HHHHHHHHHHHHHTTSS---EEEEESCH-HHHHHHHH
T ss_pred cccccCcCCCCCCHHHHHHHHHHHhcC-------CCCCc----hhHHHHHHHHHHHHCCC---eEEEecCH-HHHHHHHH
Confidence 3666554433 3478888888776420 11111 34677899999999985 46777666 56788777
Q ss_pred HHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeE
Q 043646 158 EVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPML 236 (625)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~l 236 (625)
.+++ +++||+ |+++.++|+++...++..|++++.+++++ ++.+|+++|+++++ +++++
T Consensus 96 ~~~~--------------~~~gd~--vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~-----~~~~~ 154 (399)
T 2oga_A 96 RGLG--------------IGPGDE--VIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAIT-----PRTRA 154 (399)
T ss_dssp HHTT--------------CCTTCE--EEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCC-----TTEEE
T ss_pred HHhC--------------CCCcCE--EEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcC-----CCCeE
Confidence 7762 467875 99999999999888888999999999986 57899999999987 46887
Q ss_pred EEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCC--CCCCCCCCceEEEEe-c
Q 043646 237 GSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATH--KFLGGPGTPGILLIS-K 313 (625)
Q Consensus 237 v~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~h--K~lggp~g~G~l~v~-~ 313 (625)
|+ ++|+||.+.|+++|.++|+++|+++|+|++++.+... +...+. ...|++++|+| |++++|+..|+++.+ +
T Consensus 155 v~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~-~~~~~~-~~~di~~~S~~~sK~~~~~G~~g~~~~~~~ 229 (399)
T 2oga_A 155 LL---PVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARY-RGRRIG-AGSSVAAFSFYPGKNLGCFGDGGAVVTGDP 229 (399)
T ss_dssp EC---CBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEE-TTEETT-CTTCEEEEECCTTSSSCCSSCCEEEEESCH
T ss_pred EE---EeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCcc-CCeecc-cccCEEEEeCCCCccCCcCCceEEEEeCCH
Confidence 76 4689999999999999999999999999999877542 333331 12599999985 999865556788776 4
Q ss_pred cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 043646 314 ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESA 391 (625)
Q Consensus 314 ~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l 391 (625)
++. +.+.+....++... +... ...+. .+.+..+.. .++++ ..+.+.++.+.+++++
T Consensus 230 ~~~--~~l~~~~~~g~~~~-----------~~~~-~~g~~-~~~~~~~~a~~~~~l~-------~~~~~~~~~~~~~~~l 287 (399)
T 2oga_A 230 ELA--ERLRMLRNYGSRQK-----------YSHE-TKGTN-SRLDEMQAAVLRIRLA-------HLDSWNGRRSALAAEY 287 (399)
T ss_dssp HHH--HHHHHHHBTTCSST-----------TCCC-SCCCB-CCCCHHHHHHHHHHHH-------THHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHhcCcccc-----------cccc-ccccC-CCcCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 542 22222211111100 0000 00000 122322221 12222 2345667778889999
Q ss_pred HHhhCCCCcEEEeCCCCCCCcce-EEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhh-Hhh
Q 043646 392 LGRILPNQNIQVLGNTSVKRQAI-LSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYG-HTL 469 (625)
Q Consensus 392 ~~~L~~l~gv~v~~~~~~~~~~i-~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~-~~~ 469 (625)
.+.|.+++++++....+ ...++ +.|.+.. .+..++.+.|.+ +||.++.++... ... ..+
T Consensus 288 ~~~L~~~~g~~~~~~~~-~~~~~~~~~~~~~----------------~~~~~l~~~L~~-~gI~v~~~~~~~-~~~~~~~ 348 (399)
T 2oga_A 288 LSGLAGLPGIGLPVTAP-DTDPVWHLFTVRT----------------ERRDELRSHLDA-RGIDTLTHYPVP-VHLSPAY 348 (399)
T ss_dssp HHHTTTCTTCBCCCCCT-TEECCCSSEEEEC----------------SSHHHHHHHHHH-TTBCCBCSCSSC-GGGSHHH
T ss_pred HHHhccCCCccccCCCC-CCcceeEEEEEEC----------------CCHHHHHHHHHH-CCCceecCCCCc-cccchhh
Confidence 99999988887654221 11122 1222221 135678888865 799998765211 000 001
Q ss_pred hcCCh-----hhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 470 LAFDQ-----TRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 470 l~~~~-----~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
..++. +....+ ..+++||+++.++|++|+++++++|++++++
T Consensus 349 ~~~~~~~~~~p~~~~~-----------~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 395 (399)
T 2oga_A 349 AGEAPPEGSLPRAESF-----------ARQVLSLPIGPHLERPQALRVIDAVREWAER 395 (399)
T ss_dssp HTTSCCTTSCHHHHHH-----------HHHEEEECCSTTCCHHHHHHHHHHHHHHHHS
T ss_pred cccCCCCCCChhHHHH-----------HhCEEEccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 11110 000000 1278999999999999999999999998765
No 128
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.93 E-value=7.5e-25 Score=238.13 Aligned_cols=283 Identities=14% Similarity=0.103 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ 200 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (625)
....++++++++ +|++ + ++++| +|+++++..++.++ +++||+ |+++..+|+++..++..
T Consensus 57 ~~~~~~~~~la~-~g~~-~-~v~~~-~G~t~a~~~~~~a~---------------~~~gd~--Vlv~~~~h~s~~~~~~~ 115 (446)
T 2x3l_A 57 EVILKSMKQVEK-HSDY-D-GYFLV-NGTTSGILSVIQSF---------------SQKKGD--ILMARNVHKSVLHALDI 115 (446)
T ss_dssp SHHHHHHHHHCS-CTTE-E-EEEES-SHHHHHHHHHHHTT---------------TTSSSC--EEECTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHh-cCCC-c-eEEEe-CCHHHHHHHHHHHh---------------cCCCCE--EEEecCccHHHHHHHHH
Confidence 356789999999 9986 3 68887 88988888888776 478886 99999999999999999
Q ss_pred cCCeEEEEec--CCC----CCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcC
Q 043646 201 SLAEVVEIGL--DDN----GLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASG 274 (625)
Q Consensus 201 ~G~~vv~v~~--~~~----~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~ 274 (625)
.|++++.++. +++ +.+|+++| +. +++++|++++ +|+||.+.|+++|+++|++||+++++|+||+.
T Consensus 116 ~G~~~~~v~~~~~~~~~~~~~~d~~~l---~~-----~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~ 186 (446)
T 2x3l_A 116 SQQEGHFIETHQSPLTNHYNKVNLSRL---NN-----DGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGA 186 (446)
T ss_dssp HTCCEEECEEEECTTTSSEEEEEC---------------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCT
T ss_pred cCCeEEEEeCeeccccCcCCCCCHHHH---cC-----CCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhh
Confidence 9999999988 554 46788877 33 5789999999 66799999999999999999999999999886
Q ss_pred CCc-----cccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchh
Q 043646 275 PYV-----KINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIE 349 (625)
Q Consensus 275 g~~-----~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~ 349 (625)
+. +.+.... ++|+++.|+||+++++.|+|+++++++.. + ..+.. ...
T Consensus 187 -~~~f~~~~~~~~~~---g~Di~~~S~~K~l~~~~g~g~l~~~~~~i--~-~~~~~---------------------~~~ 238 (446)
T 2x3l_A 187 -HFGLQGFPDSTLNY---QADYVVQSFHKTLPALTMGSVLYIHKNAP--Y-RENII---------------------EYL 238 (446)
T ss_dssp -TTTSTTSCCCGGGG---TCSEEEECHHHHSSSCTTCEEEEEETTCT--T-HHHHH---------------------HHH
T ss_pred -hhccCCCCCChHHc---CCCEEEECCccccccccccEEEEEcCCcC--C-HHHHH---------------------HHH
Confidence 33 3333333 68999999999888888899999988762 1 11110 001
Q ss_pred hhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCC
Q 043646 350 ERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSP 427 (625)
Q Consensus 350 ~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~ 427 (625)
..+..++++....+. ++++++ +..|.+.+.++.+.+++++++. +++++.+.+ ...+.+.+.
T Consensus 239 ~~~~~~s~~~~~~aal~~a~~~l--~~~g~~~~~~~~~~l~~~l~~~-----g~~~~~~~~---~~~l~i~~~------- 301 (446)
T 2x3l_A 239 SYFQTSSPSYLIMASLESAAQFY--KTYDSTLFFAKRAQLIECLENK-----GFEMLQVDD---PLKLLIKYE------- 301 (446)
T ss_dssp HHHSCSSCCHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHH-----TCEEEECSS---TTEEEEECT-------
T ss_pred HHHcCCCchHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHc-----CCEECcCCC---CeEEEEEeC-------
Confidence 234566777665432 344444 4456666788888888888887 677776532 123333332
Q ss_pred ccccccCCCCCChHHHHHHhhhhcCeeee-cCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCH
Q 043646 428 ENMKIERNKPLHGPFVATLFNDLFGIQAR-GGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSN 506 (625)
Q Consensus 428 ~~~~~~~~~~l~~~~v~~~L~~~~gI~v~-~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~ 506 (625)
+++..++.+.|.++ ||.++ +| .+++|++++.++|+
T Consensus 302 ---------~~~~~~l~~~L~~~-GI~v~~~g----------------------------------~~~iRi~~~~~~t~ 337 (446)
T 2x3l_A 302 ---------GFTGHDIQNWFMNA-HIYLELAD----------------------------------DYQALAILPLWHHD 337 (446)
T ss_dssp ---------TSCHHHHHHHHHHT-TEEESEEC----------------------------------SSCEEEECCCCCTT
T ss_pred ---------CcCHHHHHHHHHHC-CCEEEecC----------------------------------CCEEEEEeecCCCH
Confidence 23467899988764 99986 32 26799999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 043646 507 EEFEFILAALEFIAAYG 523 (625)
Q Consensus 507 edid~ll~aL~~~~~~~ 523 (625)
+|+ +++++|+++++..
T Consensus 338 e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 338 DTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp CCC-CHHHHHHHHHTCC
T ss_pred HHH-HHHHHHHHHHHhh
Confidence 999 9999999987654
No 129
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.93 E-value=6.2e-25 Score=234.36 Aligned_cols=346 Identities=13% Similarity=0.050 Sum_probs=223.5
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchh
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIM 168 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (625)
.++.+.+++.+.+.... +. .......++++.+++++|.+ .++++++|+ +++..++.+++
T Consensus 34 ~~~~~~~a~~~~~~~~~-------~~---~~~~~~~~l~~~la~~~~~~---~~i~~~~gt-~al~~~l~~~~------- 92 (391)
T 3dr4_A 34 LDGNERDYVLECMDTTW-------IS---SVGRFIVEFEKAFADYCGVK---HAIACNNGT-TALHLALVAMG------- 92 (391)
T ss_dssp CCSSHHHHHHHHHHHTC-------CS---SCSHHHHHHHHHHHHHHTCS---EEEEESSHH-HHHHHHHHHHT-------
T ss_pred CCHHHHHHHHHHHHcCC-------cc---CCChHHHHHHHHHHHHhCCC---cEEEeCCHH-HHHHHHHHHcC-------
Confidence 34677777777663211 10 01234678999999999986 578886664 56777777663
Q ss_pred hhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccc
Q 043646 169 RDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTG 247 (625)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG 247 (625)
+++||+ |+++.++|+++...++..|++++.+++++ ++.+|+++|+++++ +++++|+ ++|+||
T Consensus 93 -------~~~gd~--vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~-----~~~~~v~---~~n~tG 155 (391)
T 3dr4_A 93 -------IGPGDE--VIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALIT-----PRTKAIM---PVHLYG 155 (391)
T ss_dssp -------CCTTCE--EEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGSGGGCC-----TTEEEEC---CBCGGG
T ss_pred -------CCCcCE--EEECCCchHHHHHHHHHCCCEEEEEecCccccCcCHHHHHHhcC-----CCceEEE---EECCCC
Confidence 467885 99999999999999999999999999984 67899999999887 5788777 467999
Q ss_pred cccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEc--CCCCCCCCCCceEEEEeccccccCCCCCcc
Q 043646 248 IYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLA--THKFLGGPGTPGILLISKALYQLGSSPPST 325 (625)
Q Consensus 248 ~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S--~hK~lggp~g~G~l~v~~~~~~l~~~~p~~ 325 (625)
.+.|+++|.++|+++|+++|+|++++.|....+..... ..|++++| .||+++++. .|+++.++... .+.+.+..
T Consensus 156 ~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~--~~di~~~S~s~~K~l~~g~-gg~~~~~~~~~-~~~~~~~~ 231 (391)
T 3dr4_A 156 QICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGS--LGDCATFSFFGNAIITTGE-GGMITTNDDDL-AAKMRLLR 231 (391)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTS--SSSEEEEECBTTSSSCCBS-CEEEEESCHHH-HHHHHHHH
T ss_pred ChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecc--cCCEEEEECCCCCcCCcCC-eEEEEECCHHH-HHHHHHHH
Confidence 99999999999999999999999999876654432211 12555555 779998643 57877766531 11122222
Q ss_pred cCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeC
Q 043646 326 CGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLG 405 (625)
Q Consensus 326 ~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~ 405 (625)
.+|... ...+... ...+..+... +.+++.+. ...+.+.+.++.+.+++++.+.|.++ ++++..
T Consensus 232 ~~g~~~---------~~~~~~~-~~g~~~~~~~----l~aa~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 294 (391)
T 3dr4_A 232 GQGMDP---------NRRYWFP-IVGFNYRMTN----IQAAIGLA--QLERVDEHLAARERVVGWYEQKLARL-GNRVTK 294 (391)
T ss_dssp BTTCCT---------TSTTCCS-SCCCBCBCCH----HHHHHHHH--HHHTHHHHHHHHHHHHHHHHHHHGGG-TTSEEC
T ss_pred hcCCCC---------CCccccc-ccccccCCCH----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcC-CccccC
Confidence 222110 0000000 0001111111 12223332 23456778888899999999999988 777766
Q ss_pred C--CCC-CCc-ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCC---CCCchhhHhhhcCChhhHH
Q 043646 406 N--TSV-KRQ-AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGC---ACAGPYGHTLLAFDQTRSL 478 (625)
Q Consensus 406 ~--~~~-~~~-~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~---~~~~~~~~~~l~~~~~~~~ 478 (625)
+ ... ... .++.+.+... .+++..++.+.|.+ +||.+++|. +|..++... ....-+.+.
T Consensus 295 ~~~~~~~~~~~~~~~i~~~~~-------------~~~~~~~l~~~L~~-~GI~v~~~~~p~~~~~~~~~~-~~~~~~~~~ 359 (391)
T 3dr4_A 295 PHVALTGRHVFWMYTVRLGEG-------------LSTTRDQVIKDLDA-LGIESRPVFHPMHIMPPYAHL-ATDDLKIAE 359 (391)
T ss_dssp CCCCTTSCCCCSSEEEEECSS-------------CSSCHHHHHHHHHH-TTCCCEECCCCGGGSGGGGGG-CCTTCHHHH
T ss_pred cCCCCCCcceeEEEEEEECCc-------------cchhHHHHHHHHHH-CCCceeecCCccccChhhhhc-CcCCChHHH
Confidence 5 221 122 2344444221 13457789999965 699999886 444332221 000111111
Q ss_pred HHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 479 EIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 479 ~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
.+ ..+.+||+++.++|++||++++++|+++
T Consensus 360 ~~-----------~~~~lrl~~~~~~t~edi~~~~~~l~~~ 389 (391)
T 3dr4_A 360 AC-----------GVDGLNLPTHAGLTEADIDRVIAALDQV 389 (391)
T ss_dssp HH-----------HHHEEEECCCTTCCHHHHHHHHHHHHTT
T ss_pred HH-----------HhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 11 1378999999999999999999999865
No 130
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.93 E-value=7.6e-24 Score=222.34 Aligned_cols=320 Identities=13% Similarity=0.062 Sum_probs=219.6
Q ss_pred CceEeccCCC-CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 76 RRLTYADHTA-SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 76 ~~~~Yld~~~-~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
+.++.|..+. ..++++.+.+++.+.+.....++... ..++++++++++|++++ +|++| +|+++++.
T Consensus 15 ~~~id~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~-----------~~~lr~~la~~~~~~~~-~i~~t-~g~~~al~ 81 (350)
T 3fkd_A 15 SEIVNFSTTVWTDGDKDHLEKHLVENLNCIRHYPEPD-----------AGTLRQMLAKRNSVDNN-AILVT-NGPTAAFY 81 (350)
T ss_dssp -CCEECSCCSCCCSCCHHHHHHHHHTGGGGGSCCCTT-----------CHHHHHHHHHHTTCCGG-GEEEE-SHHHHHHH
T ss_pred ccEEEccCCCCCCCCCHHHHHHHHHhHhHHhcCCCCc-----------HHHHHHHHHHHhCcCHH-HEEEc-CCHHHHHH
Confidence 4556666553 33467889999988774333333321 14689999999998776 89998 89999999
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEec-CCCCCCCHHHHHHHHHHhhhCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGL-DDNGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~-~~~~~ld~~~L~~~l~~~~~~~~ 233 (625)
.++.++ . ||+ |+++.+.|+++...++..|++++.+++ +..+.+++ ++
T Consensus 82 ~~~~~l----------------~-gd~--Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~-------------~~ 129 (350)
T 3fkd_A 82 QIAQAF----------------R-GSR--SLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGEADF-------------SN 129 (350)
T ss_dssp HHHHHT----------------T-TCE--EEEEESCCHHHHHHHHHTTCEEEEEETTSCGGGSCC-------------TT
T ss_pred HHHHHH----------------C-CCE--EEEeCCCcHHHHHHHHHcCCeEEEEecCCccccCcc-------------CC
Confidence 998876 2 665 899999999998889999999999998 65344443 36
Q ss_pred CeEEEEecccCccccccCHHHHHHHHHHcC-CEEEEeccCcCCCcccc--CCCCCCCCCcEEEEcCCCCCCCC-CCceEE
Q 043646 234 PMLGSFSACSNVTGIYSDTRSIARLLHQYG-GFACFDFAASGPYVKIN--LRSRNIDGYDAIFLATHKFLGGP-GTPGIL 309 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~l~~I~~la~~~g-~~vivD~A~~~g~~~id--~~~~~~~~~D~v~~S~hK~lggp-~g~G~l 309 (625)
+++|++++++||||.+.|+++|.++++.++ .++++|++++.....-. .......+.++++.|++|+++.| .++|++
T Consensus 130 ~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~ 209 (350)
T 3fkd_A 130 MDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYI 209 (350)
T ss_dssp CSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEE
T ss_pred CCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeE
Confidence 899999999999999999999999999876 79999999874322111 01111124568889999999744 358999
Q ss_pred EEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHH
Q 043646 310 LISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYI-GYEVIKKQEDVYI 388 (625)
Q Consensus 310 ~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~-g~~~i~~~~~~l~ 388 (625)
++++++.. .+.... ...+++..... ++.+++ .... -.+.+.++. .++
T Consensus 210 ~~~~~~~~--~~~~~~---------------------------~~~~~~~~~~~-~~~~~l-~~~~~~~~~~~~~~-~~~ 257 (350)
T 3fkd_A 210 VANKDFMK--RVAAFS---------------------------TPWAVNALAIE-AAKFIL-IHPAQFTLPIRKWQ-RNT 257 (350)
T ss_dssp ECCHHHHH--HHHTTC---------------------------CTTCSCHHHHH-HHHHHH-HCTTTTCCCHHHHH-HHH
T ss_pred EeCHHHHH--HHHHhC---------------------------CCCCCCHHHHH-HHHHHH-hCHHHHHHHHHHHH-HHH
Confidence 99777632 111100 11223333321 222222 1211 123334444 678
Q ss_pred HHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHh
Q 043646 389 ESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHT 468 (625)
Q Consensus 389 ~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~ 468 (625)
+++.+.|.++|++++..+ .+..+.+.+ +.. +..++.+.|.+++||.+++|..|...
T Consensus 258 ~~l~~~L~~~~~~~~~~~----~~~~~~~~~-~~~---------------~~~~l~~~L~~~~gi~v~~g~~f~~~---- 313 (350)
T 3fkd_A 258 VDFITALNRLDGVEVHPS----GTTFFLLRL-KKG---------------TAAELKKYMLEEYNMLIRDASNFRGL---- 313 (350)
T ss_dssp HHHHHHHHHSTTEEECCC----SSSEEEEEE-SSS---------------CHHHHHHHHHHTTCEECEECTTSTTC----
T ss_pred HHHHHHHhcCCCcEECCC----CCcEEEEEC-CCC---------------CHHHHHHHHHHHCCEEEEeCccCCCC----
Confidence 888899988889988644 234443333 211 36788888876589999999887511
Q ss_pred hhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 469 LLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 469 ~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.++++|||++ +++|+++++++|+++..+
T Consensus 314 -----------------------~~~~iRis~~---~~~~~~~l~~al~~~~~~ 341 (350)
T 3fkd_A 314 -----------------------DESYVRITTQ---RPAQNQLFIKALETFLEK 341 (350)
T ss_dssp -----------------------CTTEEEEECC---CHHHHHHHHHHHHHHHTC
T ss_pred -----------------------CCCEEEEEcC---CHHHHHHHHHHHHHHHHH
Confidence 2589999997 899999999999988754
No 131
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.92 E-value=1.2e-23 Score=227.33 Aligned_cols=312 Identities=13% Similarity=0.105 Sum_probs=212.5
Q ss_pred HHHHHHHHHHHHHHhCCCC--------CCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCC
Q 043646 120 TKMVHEASNYIKRCLGGGQ--------ADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEH 191 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g~~~--------~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h 191 (625)
.++.+++.+++++.+|.+. +++|++| +|+++++..++.++ +++||+ |++..+.|
T Consensus 81 ~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t-~G~~~al~~~~~~l---------------~~~gd~--Vlv~~p~y 142 (425)
T 2r2n_A 81 PELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVT-SGSQQGLCKVFEMI---------------INPGDN--VLLDEPAY 142 (425)
T ss_dssp HHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEE-SSHHHHHHHHHHHH---------------CCTTCE--EEEESSCC
T ss_pred HHHHHHHHHHHHHhcCCCCccccccCCcCcEEEe-CcHHHHHHHHHHHh---------------CCCCCE--EEEeCCCc
Confidence 4567778888888889865 2489998 89999999998887 578885 99999999
Q ss_pred chhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhh-------hCCCCeEEEE-ecccCccccccCHH---HHHHHHH
Q 043646 192 HSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYK-------AAKRPMLGSF-SACSNVTGIYSDTR---SIARLLH 260 (625)
Q Consensus 192 ~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~-------~~~~~~lv~~-~~~~n~TG~~~~l~---~I~~la~ 260 (625)
+++...++..|++++.++++.++ +|+++|++++++.. ..+++++|++ ++++||||.+.+.+ +|+++|+
T Consensus 143 ~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~ 221 (425)
T 2r2n_A 143 SGTLQSLHPLGCNIINVASDESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELAR 221 (425)
T ss_dssp HHHHHHHGGGTCEEEEECEETTE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEeCcCCCC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHH
Confidence 99988888899999999987654 89999999987210 0135788766 79999999998865 8999999
Q ss_pred HcCCEEEEeccCcC----CCccccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeec
Q 043646 261 QYGGFACFDFAASG----PYVKINLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVN 335 (625)
Q Consensus 261 ~~g~~vivD~A~~~----g~~~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~ 335 (625)
+||+++|+|++++. +....++..+...+.++++.|++|+|+ |+ .+|++++++++.. .+..
T Consensus 222 ~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~~--~l~~------------ 286 (425)
T 2r2n_A 222 KYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGFLTGPKPLIE--RVIL------------ 286 (425)
T ss_dssp HTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEEEEEEHHHHH--HHHH------------
T ss_pred HcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhcc-CccceEEEecCHHHHH--HHHH------------
Confidence 99999999999872 222233333322245688899999997 54 4799999987732 1110
Q ss_pred cccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHhhCC-CCcE-EEeCCCCC
Q 043646 336 AFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKE--YIGYEVIKKQEDVYIESALGRILP-NQNI-QVLGNTSV 409 (625)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~--~~g~~~i~~~~~~l~~~l~~~L~~-l~gv-~v~~~~~~ 409 (625)
.......+++..... .+++..+..+ ....+.++++.+..++++.+.|.+ +|++ .+..+
T Consensus 287 -------------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p--- 350 (425)
T 2r2n_A 287 -------------HIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVP--- 350 (425)
T ss_dssp -------------HHHTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCC---
T ss_pred -------------HHHHhcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCC---
Confidence 001111223332221 2222221000 012345666777778888888876 5776 44444
Q ss_pred CCcceEEEEeccCCCCCCccccccCCCCCChHH-HHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCC
Q 043646 410 KRQAILSFLVYSTTNSSPENMKIERNKPLHGPF-VATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGY 488 (625)
Q Consensus 410 ~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~-v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~ 488 (625)
..+.+.+...+.. .+..+ +.+.|. ++||.+++|..|..+..
T Consensus 351 -~~g~~~~~~~~~~--------------~~~~~~~~~~l~-~~gv~v~pg~~f~~~~~---------------------- 392 (425)
T 2r2n_A 351 -AAGMFLWIKVKGI--------------NDVKELIEEKAV-KMGVLMLPGNAFYVDSS---------------------- 392 (425)
T ss_dssp -SBSSEEEEEETTC--------------SCCHHHHHTHHH-HTTEECEEGGGGSSSTT----------------------
T ss_pred -CceEEEEEEeCCC--------------CCHHHHHHHHHH-HCCcEEechhhhcCCCC----------------------
Confidence 3455555544421 12334 566664 58999999887652100
Q ss_pred CCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 489 LGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 489 ~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
...+++||+++. .+++++++++++|++++++
T Consensus 393 --~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 393 --APSPYLRASFSS-ASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp --SCCCEEEEECSS-CCHHHHHHHHHHHHHHHHH
T ss_pred --CCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHH
Confidence 024899999984 5999999999999988764
No 132
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.92 E-value=8.9e-23 Score=217.46 Aligned_cols=304 Identities=15% Similarity=0.125 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH-
Q 043646 120 TKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW- 198 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~- 198 (625)
.....++++.+++++|.+ + .++++ +| ++++..++.++ +++||+ |+++..+|+++...+
T Consensus 51 ~~~~~~l~~~la~~~~~~-~-~i~~~-sG-t~a~~~~~~~~---------------~~~g~~--vl~~~~~~~~~~~~~~ 109 (386)
T 1cs1_A 51 NPTRDVVQRALAELEGGA-G-AVLTN-TG-MSAIHLVTTVF---------------LKPGDL--LVAPHDCYGGSYRLFD 109 (386)
T ss_dssp CHHHHHHHHHHHHHHTCS-E-EEEES-SH-HHHHHHHHHHH---------------CCTTCE--EEEETTCCHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCC-c-EEEeC-CH-HHHHHHHHHHH---------------hCCCCE--EEEecCCcHhHHHHHH
Confidence 345678999999999986 3 67775 78 67788887776 467875 899999999876655
Q ss_pred ---HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCC
Q 043646 199 ---RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (625)
Q Consensus 199 ---~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g 275 (625)
+..|++++.++.+ |+++|+++++ +++++|++++++|+||.+.|+++|.++|++||+++|+|++++.+
T Consensus 110 ~~~~~~g~~~~~~~~~-----d~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~ 179 (386)
T 1cs1_A 110 SLAKRGCYRVLFVDQG-----DEQALRAALA-----EKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSP 179 (386)
T ss_dssp HHHTTTSCEEEEECTT-----CHHHHHHHHH-----TCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred HHHHhcCCEEEEeCCC-----CHHHHHHhhc-----cCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCccc
Confidence 4468999999864 8999999998 57999999999999999999999999999999999999999987
Q ss_pred CccccCCCCCCCCCcEEEEcCCCCCCCCCCc--eEEEEec-cccccCCCCCcccCCceEEeeccccccccccccchhhhh
Q 043646 276 YVKINLRSRNIDGYDAIFLATHKFLGGPGTP--GILLISK-ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE 352 (625)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g~--G~l~v~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~ 352 (625)
.....+ .. +.|+++.|+||++++|++. |++++++ ++. +.+.+.. ..+
T Consensus 180 ~~~~~~-~~---~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~--~~l~~~~------------------------~~~ 229 (386)
T 1cs1_A 180 ALQNPL-AL---GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVV--TELAWWA------------------------NNI 229 (386)
T ss_dssp TTCCGG-GG---TCSEEEEETTTTTTCSSCCCCEEEEESSHHHH--HHHHHHH------------------------HHH
T ss_pred ccCCcc-cc---CceEEEEcCcccccCCCCceeEEEEeCcHHHH--HHHHHHH------------------------Hhc
Confidence 654333 23 7899999999999988874 9999987 552 1111110 011
Q ss_pred cCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEe-CCC-------------CCCCcceEEEE
Q 043646 353 NGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVL-GNT-------------SVKRQAILSFL 418 (625)
Q Consensus 353 ~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~-~~~-------------~~~~~~i~~f~ 418 (625)
.++.+...... ++..+ + ..+...++....++++.+.|.+++.+.-+ .+. ....+++++|.
T Consensus 230 -~~~~~~~~~~~-~~~~l--~--~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 303 (386)
T 1cs1_A 230 -GVTGGAFDSYL-LLRGL--R--TLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFE 303 (386)
T ss_dssp -TCBCCHHHHHH-HHHHH--T--THHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEE
T ss_pred -CCCCCHHHHHH-HHhcc--c--HHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEE
Confidence 12233222211 11111 1 23334455566677788888877766432 221 01246778777
Q ss_pred eccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeec---C------CCCCchhhHhhhcCChhhHHHHHHHHHhCCC
Q 043646 419 VYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARG---G------CACAGPYGHTLLAFDQTRSLEIRSAIQKGYL 489 (625)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~---G------~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~ 489 (625)
+.. ....+.+.| ++.||.+++ | ++|.... + ......... ..
T Consensus 304 ~~~-----------------~~~~~~~~l-~~~gi~~~~~~~g~~~sl~~~~~~~~-~--~~~~~~~~~---------~~ 353 (386)
T 1cs1_A 304 LDG-----------------DEQTLRRFL-GGLSLFTLAESLGGVESLISHAATMT-H--AGMAPEARA---------AA 353 (386)
T ss_dssp ESS-----------------CHHHHHHHH-HTCSSSEEBSCCCSSSCEEEEGGGTT-T--TTSCHHHHH---------HH
T ss_pred ECC-----------------CHHHHHHHH-HhCCcceEcccCCCcceeeecccccc-c--ccCCHHHHH---------hc
Confidence 532 134677777 457999984 4 3332110 0 000000000 01
Q ss_pred CCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 490 GVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 490 g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
|+.++++|||++..+++++++.+.++|+++.
T Consensus 354 g~~~~~iRis~~~~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 354 GISETLLRISTGIEDGEDLIADLENGFRAAN 384 (386)
T ss_dssp TCCTTEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 2346899999999999999999999998763
No 133
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.92 E-value=1.9e-24 Score=234.59 Aligned_cols=360 Identities=13% Similarity=0.053 Sum_probs=209.4
Q ss_pred ceE-eccCCCCCcchHHHHHHHHHhhCCCCCC-------CC-C---CcchhhHHHHHHHHHHHHHHHHHhC--CCCCCcE
Q 043646 77 RLT-YADHTASGRSLRYIEDYIINNVLPFYGN-------TH-T---SDSYVGQRMTKMVHEASNYIKRCLG--GGQADAI 142 (625)
Q Consensus 77 ~~~-Yld~~~~~~~p~~v~ea~~~~l~~~~~n-------~~-~---~~~~~~~~~~~~~~~~~~~ia~~~g--~~~~~~v 142 (625)
..+ +|.++.... ++.+.+++.+.+...+.+ ++ . ..|.......++.+++.+++.+.+| ++++ +|
T Consensus 32 ~~i~~l~~g~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~-~i 109 (444)
T 3if2_A 32 QPVNMLGGGNPAK-IDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSE-NI 109 (444)
T ss_dssp SCCEECSCCCCCC-CHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG-GE
T ss_pred hhhhccCCCCCCc-ccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHH-HE
Confidence 466 787776554 344555554444433344 32 0 1111111223444444444444444 4455 89
Q ss_pred EEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCC------------ceEEEEc-CCCCchhHHH------HHHcCC
Q 043646 143 IFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEE------------RWVVFLG-PYEHHSNLLS------WRQSLA 203 (625)
Q Consensus 143 ift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd------------~~~Vlv~-~~~h~s~~~~------~~~~G~ 203 (625)
+|| +|+++++..++.++ +++|| ...|+++ .++|+.+... +...|.
T Consensus 110 ~~t-~G~t~al~~~~~~l---------------~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~ 173 (444)
T 3if2_A 110 ALT-NGSQNAFFYLFNLF---------------GGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLP 173 (444)
T ss_dssp EEE-SSHHHHHHHHHHHS---------------SEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCC
T ss_pred EEe-cCcHHHHHHHHHHH---------------hCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCc
Confidence 999 78898899988877 34554 0126654 7777776542 233577
Q ss_pred eEEEEecCC-CC----CCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCC
Q 043646 204 EVVEIGLDD-NG----LLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGP 275 (625)
Q Consensus 204 ~vv~v~~~~-~~----~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g 275 (625)
.++.++++. +| .+|+++|++++.. ..+++++|++++++||||.+.| +++|+++|++||+++|+|++++.+
T Consensus 174 ~~~~~~~~~~~g~~~~~~d~~~l~~~l~~--~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~ 251 (444)
T 3if2_A 174 HIDEVTHDGEEGFFKYRVDFEALENLPAL--KEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMP 251 (444)
T ss_dssp EEEEEEETTEEEEEEEECCHHHHHTCHHH--HTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTT
T ss_pred eEEecccccccCccccCCCHHHHHHHHHh--cCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCc
Confidence 888888875 33 6899999998531 0167999999999999999999 888999999999999999998753
Q ss_pred CccccCCCC--CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhc
Q 043646 276 YVKINLRSR--NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN 353 (625)
Q Consensus 276 ~~~id~~~~--~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~ 353 (625)
......... ...+.++++.|+||++....++|+++.++++.. .+... .....
T Consensus 252 ~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~--~~~~~------------------------~~~~~ 305 (444)
T 3if2_A 252 FPNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIE--AVSAM------------------------NAVVN 305 (444)
T ss_dssp TTCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHH--HHHHH------------------------HHHHH
T ss_pred ccccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHHH--HHHHH------------------------HHhcc
Confidence 322221111 112567899999997432235898888877621 11000 11111
Q ss_pred CCChhHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHhhCC-CC--cEEEeCCCCCCCcceEEEEeccCCCCCC
Q 043646 354 GGTPQIVQMIRAALAFWVKEY---IGYEVIKKQEDVYIESALGRILP-NQ--NIQVLGNTSVKRQAILSFLVYSTTNSSP 427 (625)
Q Consensus 354 ~gt~~~~~~~~aal~~~~~~~---~g~~~i~~~~~~l~~~l~~~L~~-l~--gv~v~~~~~~~~~~i~~f~~~~~~~~~~ 427 (625)
.+.+.+.+.+ +..++.... .-.+.+.++.+++++++.+.|.+ ++ ++.+..+. .+.+.+...+..
T Consensus 306 ~~~~~~~~~a--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~g~~~~~~~~~~---- 375 (444)
T 3if2_A 306 LAPTRFGAAI--ATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPE----GAIFLWLWFKDL---- 375 (444)
T ss_dssp SSCCCHHHHH--HHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCC----BSSEEEEEETTC----
T ss_pred CCCChHHHHH--HHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCC----ccEEEEEEcCCC----
Confidence 2222222211 111110000 00011333334444444444432 23 56766553 344444443321
Q ss_pred ccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHH
Q 043646 428 ENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNE 507 (625)
Q Consensus 428 ~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~e 507 (625)
+++..++.+.|. ++||.+++|..|.......-. ...++++|||++. +++
T Consensus 376 ---------~~~~~~l~~~l~-~~gi~v~~g~~~~~~~~~~~~-------------------~~~~~~iRis~~~--~~e 424 (444)
T 3if2_A 376 ---------PISTLDLYERLK-AKGTLIVPSEYFFPGVDVSDY-------------------QHAHECIRMSIAA--DEQ 424 (444)
T ss_dssp ---------SSCHHHHHHHHH-HTTEECEEGGGSCTTCCCTTC-------------------SGGGSEEEEESSS--CHH
T ss_pred ---------CCCHHHHHHHHH-HCCeEEecchhhcCCCCCccc-------------------ccCCCeEEEEEeC--CHH
Confidence 245678888884 579999999888521000000 0013789999986 999
Q ss_pred HHHHHHHHHHHHHHhh
Q 043646 508 EFEFILAALEFIAAYG 523 (625)
Q Consensus 508 did~ll~aL~~~~~~~ 523 (625)
++++++++|++++.+.
T Consensus 425 ~i~~~l~~l~~~~~~~ 440 (444)
T 3if2_A 425 TLIDGIKVIGEVVREL 440 (444)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 134
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.92 E-value=1e-24 Score=228.46 Aligned_cols=328 Identities=12% Similarity=0.059 Sum_probs=207.8
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
..++||+++....+++.+.+++.+.... .. .|.. .....++++++++++|.+ .++++++|+.+ +..
T Consensus 3 ~~~i~~~~~~~~~p~~~~~~a~~~~~~~----~~--~y~~----~~~~~~l~~~la~~~g~~---~~~~~~~gt~a-~~~ 68 (347)
T 1jg8_A 3 HMMIDLRSDTVTKPTEEMRKAMAQAEVG----DD--VYGE----DPTINELERLAAETFGKE---AALFVPSGTMG-NQV 68 (347)
T ss_dssp --CEECSCGGGCCCCHHHHHHHHTCCCC----CG--GGTC----CHHHHHHHHHHHHHHTCS---EEEEESCHHHH-HHH
T ss_pred ceEEEeccccCCCCCHHHHHHHhcCCCC----Cc--ccCC----ChHHHHHHHHHHHHhCCc---eEEEecCcHHH-HHH
Confidence 5678999999888888888888654311 00 1111 123567899999999974 45777677654 555
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH---HHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhh-hC
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL---SWRQSLAEVVEIGLDDNGLLDIEALRSQLELYK-AA 231 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~---~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~-~~ 231 (625)
++.++ +++||+ |+++.++|.+... ..+..|++++.+ .++++.+|+++|++++++.. ..
T Consensus 69 ~~~~~---------------~~~gd~--Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~ 130 (347)
T 1jg8_A 69 SIMAH---------------TQRGDE--VILEADSHIFWYEVGAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHF 130 (347)
T ss_dssp HHHHH---------------CCTTCE--EEEETTCHHHHSSTTHHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCTTS
T ss_pred HHHHh---------------cCCCCE--EEEcCcchhhhccccchhhccCeEEEEe-cCCCCccCHHHHHHHhccccccc
Confidence 55555 478885 8899999876542 456679999988 55567789999999987210 01
Q ss_pred CCCeEEEEecccCcc-ccccCH---HHHHHHHHHcCCEEEEeccCcCC---CccccCCCCCCCCCcEEEEcCCCCCCCCC
Q 043646 232 KRPMLGSFSACSNVT-GIYSDT---RSIARLLHQYGGFACFDFAASGP---YVKINLRSRNIDGYDAIFLATHKFLGGPG 304 (625)
Q Consensus 232 ~~~~lv~~~~~~n~T-G~~~~l---~~I~~la~~~g~~vivD~A~~~g---~~~id~~~~~~~~~D~v~~S~hK~lggp~ 304 (625)
+++++|++++++||| |.+.|. ++|+++|++||+++++|+++..+ +...+...+. .++|.+++|+||++++|.
T Consensus 131 ~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~~~d~~~~s~sK~l~~~~ 209 (347)
T 1jg8_A 131 PRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYA-GYADSVMFCLSKGLCAPV 209 (347)
T ss_dssp CCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHH-HTCSEEEEESSSTTCCSS
T ss_pred cCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhc-ccccEEEEecccccCCCc
Confidence 268999999999999 999774 68899999999999999987432 1122222111 157888899999998775
Q ss_pred CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCCh---hHHHHH-HHHHHHHHHhhcCHHHH
Q 043646 305 TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTP---QIVQMI-RAALAFWVKEYIGYEVI 380 (625)
Q Consensus 305 g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~---~~~~~~-~aal~~~~~~~~g~~~i 380 (625)
| |+++.++++.+ .+.... ..+ .++. .+.+.+ ..+++ .. .+.+
T Consensus 210 G-~~~~~~~~~~~--~~~~~~------------------------~~~-~~~~~~~~~~~~~~~~~l~----~~--~~~~ 255 (347)
T 1jg8_A 210 G-SVVVGDRDFIE--RARKAR------------------------KML-GGGMRQAGVLAAAGIIALT----KM--VDRL 255 (347)
T ss_dssp C-EEEEECHHHHH--HHHHHH------------------------HHH-TCCCSSTHHHHHHHHHHHH----HS--STTH
T ss_pred e-EEEEcCHHHHH--HHHHHH------------------------HHc-CCchhHHHHHHHHHHHHHH----HH--HHHH
Confidence 4 35555665521 110000 000 1111 111111 11221 11 1122
Q ss_pred HHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCC
Q 043646 381 KKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCA 460 (625)
Q Consensus 381 ~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~ 460 (625)
. +..+.++++.+.|+++ ++++..+ ...++++.+.+ +. .+.+..++.+.|.+ +||.++++.
T Consensus 256 ~-~~~~~~~~l~~~L~~~-~~~~~~~--~~~~~~~~~~~-~~-------------~~~~~~~~~~~l~~-~gi~v~~~~- 315 (347)
T 1jg8_A 256 K-EDHENARFLALKLKEI-GYSVNPE--DVKTNMVILRT-DN-------------LKVNAHGFIEALRN-SGVLANAVS- 315 (347)
T ss_dssp H-HHHHHHHHHHHHHHHH-TCBCCGG--GCCSSEEEEEC-TT-------------SSSCHHHHHHHHHH-HTEECEEEE-
T ss_pred H-HHHHHHHHHHHHHHhc-CceeccC--CCcceEEEEEc-cc-------------ccCCHHHHHHHHHH-CCCEEecCC-
Confidence 2 2233466777777665 5554321 12344444433 21 02346788888864 799998531
Q ss_pred CCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 461 CAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 461 ~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
++++||+++.+++++|+++++++|++++..
T Consensus 316 --------------------------------~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 316 --------------------------------DTEIRLVTHKDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp --------------------------------TTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 278999999999999999999999988653
No 135
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.92 E-value=1.9e-23 Score=227.13 Aligned_cols=343 Identities=13% Similarity=0.043 Sum_probs=226.0
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh----CCCCCCcEEEeCChHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCL----GGGQADAIIFCGAGTT 150 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~----g~~~~~~vift~sGtt 150 (625)
+..+.|..+... +.++.|.+++.+.+.....+.....|.. .....++++.+++++ +.+++ +|+|| +|++
T Consensus 69 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~----~~g~~~lr~~ia~~~~~g~~~~~~-~i~~t-~G~~ 142 (449)
T 3qgu_A 69 AKIISLGIGDTTEPLPKYIADAMAKAAAGLATREGYSGYGA----EQGQGALREAVASTFYGHAGRAAD-EIFIS-DGSK 142 (449)
T ss_dssp CCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCCCCCSTT----TTCCHHHHHHHHHHHHTTTTCCGG-GEEEE-SCHH
T ss_pred CCEEEeeCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCC----CCCcHHHHHHHHHHHHcCCCCCHH-HEEEc-cCHH
Confidence 456777766544 3678899999888764322222111211 122455777777777 55555 89998 7899
Q ss_pred HHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCe----------EEEEecCCCC--CCCH
Q 043646 151 AAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAE----------VVEIGLDDNG--LLDI 218 (625)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~----------vv~v~~~~~~--~ld~ 218 (625)
+++..+ ..+ +++||+ |+++.+.|+++...++..|++ ++.++++.++ ..|+
T Consensus 143 ~al~~~-~~l---------------~~~gd~--Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (449)
T 3qgu_A 143 CDIARI-QMM---------------FGSKPT--VAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDL 204 (449)
T ss_dssp HHHHHH-HHH---------------HCSSSC--EEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCG
T ss_pred HHHHHH-HHH---------------hCCCCE--EEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCCh
Confidence 989888 554 468886 999999999999899999998 9999988643 3333
Q ss_pred HHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCC----CccccCCCCC-CCCCc
Q 043646 219 EALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGP----YVKINLRSRN-IDGYD 290 (625)
Q Consensus 219 ~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g----~~~id~~~~~-~~~~D 290 (625)
++ .+++++|++++++||||.+.+ +++|+++|++||+++|+|++++.. ..+..+..+. ..+.+
T Consensus 205 ~~----------~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~ 274 (449)
T 3qgu_A 205 SK----------AKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVA 274 (449)
T ss_dssp GG----------CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTE
T ss_pred hH----------cCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcE
Confidence 21 147899999999999999977 778888999999999999998752 2222333221 12457
Q ss_pred EEEEcCCCCCCCC-CCceEEEEeccccccCC-CCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHH
Q 043646 291 AIFLATHKFLGGP-GTPGILLISKALYQLGS-SPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALA 368 (625)
Q Consensus 291 ~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~-~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~ 368 (625)
+++.|++|+||.| ..+|++++++++. .. ..+.. ..+.. .......+++..+.. ++.+
T Consensus 275 i~~~s~sK~~g~~G~r~G~~~~~~~~~--~~~~~~~~-----------------~~~~~-~~~~~~~~~~~~~~~-a~~~ 333 (449)
T 3qgu_A 275 IETCSFSKYAGFTGVRLGWTVVPKALK--YANGEPVH-----------------ADWNR-VMTTCFNGASNIVQA-GGLA 333 (449)
T ss_dssp EEEEECSGGGTCTTCCCEEEECCTTCB--CTTSCBHH-----------------HHHHH-HHHHSCCCCCHHHHH-HHHH
T ss_pred EEEecchhhcCCccceeEEEecCHHHH--hhhhhhHH-----------------HHHHH-HhhcccCCCCHHHHH-HHHH
Confidence 8899999999734 3589999988772 21 00000 00000 111122233333322 1222
Q ss_pred HHHH-hhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHh
Q 043646 369 FWVK-EYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLF 447 (625)
Q Consensus 369 ~~~~-~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L 447 (625)
.+.. .....+.+.++.+.+++++.+.|.++ ++++..+. .+.+.+...++ ++..++++.|
T Consensus 334 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~----~~~~~~~~~~~---------------~~~~~~~~~l 393 (449)
T 3qgu_A 334 CLQPEGLKEMNAMIKFYKENAQILKTTFTEM-GFSVYGGD----DAPYIWVGFPG---------------KPSWDVFAEI 393 (449)
T ss_dssp HTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEESS----SSSEEEEECTT---------------SCHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCC----CeeEEEEECCC---------------CCHHHHHHHH
Confidence 2210 11235577788888899999999887 77776553 23344443332 2466788888
Q ss_pred hhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 448 NDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 448 ~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.+++||.+++|..|+.. .++++|||+. .+++++++++++|++++.+
T Consensus 394 ~~~~gI~v~pg~~f~~~---------------------------~~~~iRis~~--~~~e~i~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 394 LERCNIVTTPGSGYGPA---------------------------GEGFVRASAF--GSRENILEAVRRFKEAYGK 439 (449)
T ss_dssp HHHHCEECEEGGGGCGG---------------------------GTTEEEEECC--SCHHHHHHHHHHHHHHHC-
T ss_pred HHHCCEEEecchHhCCC---------------------------CCCeEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 77789999999877621 2489999964 4999999999999988754
No 136
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.92 E-value=6.9e-24 Score=231.53 Aligned_cols=359 Identities=15% Similarity=0.137 Sum_probs=209.4
Q ss_pred CCcchHHHHHHHHHhhCCCC--CCCCCCcchhhHHH-HHHHHHHHHHHHHHhCCCCCC--cEEEeCChHHHHHHHHHHHh
Q 043646 86 SGRSLRYIEDYIINNVLPFY--GNTHTSDSYVGQRM-TKMVHEASNYIKRCLGGGQAD--AIIFCGAGTTAAIKRLQEVM 160 (625)
Q Consensus 86 ~~~~p~~v~ea~~~~l~~~~--~n~~~~~~~~~~~~-~~~~~~~~~~ia~~~g~~~~~--~vift~sGttaal~~l~~~l 160 (625)
..+.++.|++++...+...| ++|+.. +..|..+ ..+.+.+++++++++|++.++ ..+++++|+.+ +..++.++
T Consensus 63 ~n~~~~~V~eA~~~~l~~~y~~G~~g~r-~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~A-n~~al~al 140 (490)
T 2a7v_A 63 ENFCSRAALEALGSCLNNKYSEGYPGKR-YYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPA-NLAVYTAL 140 (490)
T ss_dssp CCCCCHHHHHHHTSGGGTCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHH-HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCccCCCccc-ccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHH-HHHHHHHH
Confidence 34568899999988886655 667653 3334333 245557889999999998642 13555467655 55555555
Q ss_pred cccccchhhhhhhhccCCCCceEEEEcCCCCchhHH--------HHHHcCCe--EEEEecC-CCCCCCHHHHHHHHHHhh
Q 043646 161 GITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL--------SWRQSLAE--VVEIGLD-DNGLLDIEALRSQLELYK 229 (625)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~--------~~~~~G~~--vv~v~~~-~~~~ld~~~L~~~l~~~~ 229 (625)
++|||+ |+++..+|.+... .+...|.. ++.++++ .++.+|+++|++++..
T Consensus 141 ---------------~~pGD~--Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~-- 201 (490)
T 2a7v_A 141 ---------------LQPHDR--IMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARL-- 201 (490)
T ss_dssp ---------------CCSCEE--CCC-------------------------------CCBCTTTCSBCHHHHHHHHHH--
T ss_pred ---------------cCCCCE--ecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhh--
Confidence 578986 8888888765431 22344554 3444555 3689999999999974
Q ss_pred hCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEE
Q 043646 230 AAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGIL 309 (625)
Q Consensus 230 ~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l 309 (625)
.++++|+++.++|+ ...|+++|+++|++||+++++|+||+.|.+..+.......++|++++|+||+|+||.| |++
T Consensus 202 --~~~klIi~~~s~~~--~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~~aDiv~~S~hK~l~Gp~G-G~i 276 (490)
T 2a7v_A 202 --FRPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARS-GLI 276 (490)
T ss_dssp --HCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCSCSC-EEE
T ss_pred --cCCcEEEEcCCCCC--CcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCCCCCEEEECCcccCccccc-hhe
Confidence 36888888776665 5679999999999999999999998755432221111112689999999999998987 999
Q ss_pred EEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 043646 310 LISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIE 389 (625)
Q Consensus 310 ~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~ 389 (625)
+++++....+ +. .+....+ +.....+........|+|+...+.+.+.++........+...++...+++
T Consensus 277 ~~~~~~~~~~---~~--~~~~~~~------~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~ 345 (490)
T 2a7v_A 277 FYRKGVKAVD---PK--TGREIPY------TFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNAR 345 (490)
T ss_dssp EEECSEEEEE---TT--TEEEEEC------CCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred eeccchhccc---cc--ccchhhH------HHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 9988641100 00 0000000 00000000001112345555444332222221111234667788888999
Q ss_pred HHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhh
Q 043646 390 SALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTL 469 (625)
Q Consensus 390 ~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~ 469 (625)
++.+.|.+. |++++.+. ....++.+.+.+ .++++.++.+.| ++.||.+..+..++.. ..
T Consensus 346 ~L~~~L~~~-G~~v~~~~--t~t~lv~vdl~~--------------~g~~~~~~~~~L-~~~GI~v~~~~~p~d~-~p-- 404 (490)
T 2a7v_A 346 AMADALLER-GYSLVSGG--TDNHLVLVDLRP--------------KGLDGARAERVL-ELVSITANKNTCPGDR-SA-- 404 (490)
T ss_dssp HHHHHHHHT-TCEEGGGS--CSSSEEEEECTT--------------TTCCHHHHHHHH-HHTTEECEEECCTTCC-CS--
T ss_pred HHHHHHHHc-CcEEecCC--CCCeEEEEEeCC--------------CCCCHHHHHHHH-HhCCeEEecCccCCCC-CC--
Confidence 999999886 88887531 122344433322 245677888888 5579999876544311 00
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCCcEEEEecC----CCCCHHHHHHHHHHHHHHHHhh
Q 043646 470 LAFDQTRSLEIRSAIQKGYLGVKPGWTRITFP----YYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 470 l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~----~~~t~edid~ll~aL~~~~~~~ 523 (625)
..++.+||+.. ...+++|+++++++|.+++...
T Consensus 405 ---------------------~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~~ 441 (490)
T 2a7v_A 405 ---------------------ITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIG 441 (490)
T ss_dssp ---------------------SSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CCCCceEecccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence 02477999763 3468999999999999987654
No 137
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.92 E-value=1.5e-24 Score=229.57 Aligned_cols=351 Identities=14% Similarity=0.039 Sum_probs=219.1
Q ss_pred eccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 043646 80 YADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQE 158 (625)
Q Consensus 80 Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (625)
|+|.+... +.++.+.+++.+.+...+ +.. .....++++.+++++|.+ .++++++|+ +++..++.
T Consensus 4 ~~~~~~~~~~~~~~v~~a~~~~~~~~~-------~~~----~~~~~~l~~~la~~~~~~---~~~~~~sGt-~al~~al~ 68 (367)
T 3nyt_A 4 FIDLKNQQARIKDKIDAGIQRVLRHGQ-------YIL----GPEVTELEDRLADFVGAK---YCISCANGT-DALQIVQM 68 (367)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHCC-------CSS----CHHHHHHHHHHHHHHTCS---EEEEESCHH-HHHHHHHH
T ss_pred cccccccccccCHHHHHHHHHHHhcCC-------ccC----ChHHHHHHHHHHHHhCCC---cEEEeCCHH-HHHHHHHH
Confidence 56655554 445678888877663211 111 124677999999999985 578885555 45666666
Q ss_pred HhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC-CCCCHHHHHHHHHHhhhCCCCeEE
Q 043646 159 VMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN-GLLDIEALRSQLELYKAAKRPMLG 237 (625)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~-~~ld~~~L~~~l~~~~~~~~~~lv 237 (625)
+++ +++||+ |+++..+|+++...++..|++++.++++++ +.+|+++|+++++ +++++|
T Consensus 69 ~~~--------------~~~gd~--Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~-----~~~~~v 127 (367)
T 3nyt_A 69 ALG--------------VGPGDE--VITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAIT-----PRTKAI 127 (367)
T ss_dssp HTT--------------CCTTCE--EEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGTGGGCC-----TTEEEE
T ss_pred HhC--------------CCCcCE--EEECCCccHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHhcC-----cCCcEE
Confidence 653 468885 999999999999999999999999999875 7899999999886 578887
Q ss_pred EEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcC--CCCCCCCCCceEEEEeccc
Q 043646 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLAT--HKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 238 ~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~--hK~lggp~g~G~l~v~~~~ 315 (625)
+ ++|+||...|+++|.++|+++|+++|+|++|+.|.. .+.+.....+ |++++|+ ||++++++..|+++.++..
T Consensus 128 ~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~-~~~~~~~~~~-di~~~Sf~~~K~l~~~g~gg~~~~~~~~ 202 (367)
T 3nyt_A 128 I---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGAS-YKGKRSCNLS-TVACTSFFPSAPLGCYGDGGAIFTNDDE 202 (367)
T ss_dssp C---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCE-ETTEETTSSS-SEEEEECCTTSSSCCSSCCEEEEESCHH
T ss_pred E---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCe-ECCeeccCCC-CEEEEECCCCCcCCCcCceeEEEeCCHH
Confidence 7 778999999999999999999999999999997765 2322221112 9999985 8999864545777775432
Q ss_pred cccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhh
Q 043646 316 YQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRI 395 (625)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L 395 (625)
. .+.+.+...+|....+ .. ....+.....++.+. +++.. ....+.+.++.+++++++.+.|
T Consensus 203 l-~~~~~~~~~~g~~~~~-----------~~-~~~g~~~~~~~~~aa--~~~~~----l~~~~~~~~~~~~~~~~~~~~L 263 (367)
T 3nyt_A 203 L-ATAIRQIARHGQDRRY-----------HH-IRVGVNSRLDTLQAA--ILLPK----LEIFEEEIALRQKVAAEYDLSL 263 (367)
T ss_dssp H-HHHHHHHTBTTEEETT-----------EE-CSCCCBCCCCHHHHH--HHHHH----HHTHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHhcCCCcCc-----------ee-eccCcCCCccHHHHH--HHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1112222222221000 00 000111112222221 11111 1234666777888889999999
Q ss_pred CCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhh-c-CC
Q 043646 396 LPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLL-A-FD 473 (625)
Q Consensus 396 ~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l-~-~~ 473 (625)
.++ ++.+.............|.+... +...+.+.|.+ .||.++.+..+.......+. . ..
T Consensus 264 ~~~-~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~l~~~L~~-~GI~~~~~~~~~~~~~~~~~~~~~~ 325 (367)
T 3nyt_A 264 KQV-GIGTPFIEVNNISVYAQYTVRMD----------------NRESVQASLKA-AGVPTAVHYPIPLNKQPAVADEKAK 325 (367)
T ss_dssp HHT-TCCCCCCCTTEECCCSSEEEECS----------------SHHHHHHHHHH-HTCCCBCSCSSCGGGSGGGCCTTCC
T ss_pred ccC-CeeccCCCCCCceeeEEEEEEeC----------------CHHHHHHHHHH-CCCceeccCCCccccChhhhccCCC
Confidence 877 44443221111111111222111 25678888855 69999877532211001110 0 00
Q ss_pred hhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 474 QTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 474 ~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
-+.+.++ ..+.+|++++..+|++|+++++++|++.
T Consensus 326 ~~~~~~~-----------~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 326 LPVGDKA-----------ATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp CHHHHHH-----------HHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred ChHHHHH-----------HhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 0111111 1378999999999999999999999854
No 138
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.92 E-value=4.5e-24 Score=228.98 Aligned_cols=159 Identities=16% Similarity=0.199 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH-
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR- 199 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~- 199 (625)
....++++.+++++|.+ + .++++ +|+ +++..++. + +++||+ |+++.+.|+++...+.
T Consensus 67 p~~~~l~~~la~~~g~~-~-~i~~~-sG~-~ai~~~~~-l---------------~~~gd~--Vl~~~~~y~~~~~~~~~ 124 (403)
T 3cog_A 67 PTRNCLEKAVAALDGAK-Y-CLAFA-SGL-AATVTITH-L---------------LKAGDQ--IICMDDVYGGTNRYFRQ 124 (403)
T ss_dssp HHHHHHHHHHHHHHTCS-E-EEEES-CHH-HHHHHHHT-T---------------SCTTCE--EEEESSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCC-c-EEEEC-CHH-HHHHHHHH-H---------------hCCCCE--EEEeCCCcchHHHHHHH
Confidence 34677999999999986 3 67776 786 67877766 5 478885 9999999998766553
Q ss_pred ---HcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcC-CEEEEeccCcCC
Q 043646 200 ---QSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYG-GFACFDFAASGP 275 (625)
Q Consensus 200 ---~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g-~~vivD~A~~~g 275 (625)
..|++++.++.+ |+++|+++++ +++++|++++++||||.+.|+++|+++|+++| +++++|++++.+
T Consensus 125 ~~~~~G~~v~~v~~~-----d~~~l~~~i~-----~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~ 194 (403)
T 3cog_A 125 VASEFGLKISFVDCS-----KIKLLEAAIT-----PETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSP 194 (403)
T ss_dssp TGGGGTCEEEEECTT-----SHHHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCT
T ss_pred HHHHcCCEEEEECCC-----CHHHHHHhcC-----cCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCccc
Confidence 469999999875 8999999887 57999999999999999999999999999999 999999999887
Q ss_pred CccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEec-cc
Q 043646 276 YVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISK-AL 315 (625)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~-~~ 315 (625)
.....+. + ++|+++.|+||++++|++ .|++++++ ++
T Consensus 195 ~~~~~~~-~---~~div~~S~sK~~~g~~~~~~G~v~~~~~~l 233 (403)
T 3cog_A 195 YFQRPLA-L---GADISMYSATKYMNGHSDVVMGLVSVNCESL 233 (403)
T ss_dssp TTCCTTT-T---TCSEEEEETTTTTTCSSCCCCEEEEECCHHH
T ss_pred ccCCccc-c---CCeEEEEcChhhccCCCCCeEEEEEECcHHH
Confidence 6432222 2 789999999999999886 49999864 54
No 139
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.92 E-value=1.1e-23 Score=226.48 Aligned_cols=335 Identities=13% Similarity=0.050 Sum_probs=215.7
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQ 157 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (625)
.+|.-.+-..+.+....+.+.... .. .+.+++......+++++.+++++|++ + .++| ++| +++++.++
T Consensus 47 pi~~s~t~~~~~~~~~~~~~~~~~-----~~---~~~y~r~~~p~~~~le~~lA~l~g~~-~-~i~~-ssG-t~Ai~~al 114 (415)
T 2fq6_A 47 VIQRASSLVFDSVEAKKHATRNRA-----NG---ELFYGRRGTLTHFSLQQAMCELEGGA-G-CVLF-PCG-AAAVANSI 114 (415)
T ss_dssp CBCCCSCBCCSSHHHHHHHHHTTT-----TT---SCCCTTTCCHHHHHHHHHHHHHHTCS-E-EEEE-SSH-HHHHHHHH
T ss_pred CeecccceeeCCHHHHHHhhcccc-----CC---CccccCCCCchHHHHHHHHHHHhCCC-e-EEEe-CCH-HHHHHHHH
Confidence 467666655555444333332110 00 12233334456788999999999985 2 4555 466 56677776
Q ss_pred HHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH----HcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCC
Q 043646 158 EVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR----QSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~----~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~ 233 (625)
.++ +++||+ |+++...|+++...+. ..|++++.++.+ |+++|+++|+ ++
T Consensus 115 ~~l---------------~~~Gd~--Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~-----d~~~le~ai~-----~~ 167 (415)
T 2fq6_A 115 LAF---------------IEQGDH--VLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL-----IGADIVKHLQ-----PN 167 (415)
T ss_dssp HTT---------------CCTTCE--EEEETTSCHHHHHHHHHTGGGGTCEEEEECTT-----CGGGGGGGCC-----TT
T ss_pred HHH---------------hCCCCE--EEEeCCCchHHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhhc-----cC
Confidence 655 578885 9999999999876663 369999999764 7889998887 57
Q ss_pred CeEEEEecccCccccccCHHHHHHHHHH--cCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEE
Q 043646 234 PMLGSFSACSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGIL 309 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~l~~I~~la~~--~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l 309 (625)
|++|++++++||||.+.|+++|+++||+ +|+++++|++++.++....+ .+ ++|++++|+||+++++++ .|++
T Consensus 168 tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~-~~---g~Div~~S~sK~lg~~g~~~~G~l 243 (415)
T 2fq6_A 168 TKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKAL-DF---GIDVSIQAATKYLVGHSDAMIGTA 243 (415)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGG-GG---TCSEEEEETTTTTTCSSSCCCEEE
T ss_pred CcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCcc-cc---CCeEEEEeCccccCCCCCceEEEE
Confidence 9999999999999999999999999999 99999999999866432222 23 789999999999997764 5898
Q ss_pred EEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCC-hhHH-HH-HHHHHHHHHHhhcCHHHHHHHHHH
Q 043646 310 LISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGT-PQIV-QM-IRAALAFWVKEYIGYEVIKKQEDV 386 (625)
Q Consensus 310 ~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt-~~~~-~~-~~aal~~~~~~~~g~~~i~~~~~~ 386 (625)
+.++++. +.+.. .+...|+ .+.. .. +..+++. .....++...
T Consensus 244 ~~~~~~~--~~l~~--------------------------~~~~~G~~~~~~~a~~~~~~l~~-------l~~r~~~~~~ 288 (415)
T 2fq6_A 244 VCNARCW--EQLRE--------------------------NAYLMGQMVDADTAYITSRGLRT-------LGVRLRQHHE 288 (415)
T ss_dssp EECTTTH--HHHHH--------------------------HHHHTTCCCCHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred EeCHHHH--HHHHH--------------------------HHHhcCCCCCHHHHHHHHhhhhH-------HHHHHHHHHH
Confidence 8887652 11100 0011122 2211 11 1112222 1223344455
Q ss_pred HHHHHHHhhCCCCcEE-EeCCCC-------------CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcC
Q 043646 387 YIESALGRILPNQNIQ-VLGNTS-------------VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFG 452 (625)
Q Consensus 387 l~~~l~~~L~~l~gv~-v~~~~~-------------~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~g 452 (625)
++..+.+.|.+.|.+. +..|.- ...+++++|.+..... ......+.+.| +.++
T Consensus 289 n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~------------~~~~~~~l~~l-~~~~ 355 (415)
T 2fq6_A 289 SSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLN------------NEELANYLDNF-SLFS 355 (415)
T ss_dssp HHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCC------------HHHHHHHHTTC-SSCE
T ss_pred HHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCC------------HHHHHHHHHhC-CcCe
Confidence 6777888887777664 323210 1246788888743100 00123344444 4567
Q ss_pred eeeecCCCCCc-----hh--hHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 453 IQARGGCACAG-----PY--GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 453 I~v~~G~~~~~-----~~--~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
|.++.|..|+. |. .+.+.. ...|+.++.||||++..+++++++.+.++|+.
T Consensus 356 ~a~s~G~~~s~~~~~~p~~~s~~~~~---------------~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 356 MAYSWGGYESLILANQPEHIAAIRPQ---------------GEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp ECSCCCSSSCEEEEECHHHHHTTCTT---------------CCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred EeccCCCCceeEEecCCCccccccch---------------hhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 88899988873 21 111100 01233468999999999999999999999874
No 140
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.92 E-value=4.7e-23 Score=220.00 Aligned_cols=318 Identities=13% Similarity=0.079 Sum_probs=209.3
Q ss_pred eEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
..|+|.++. ++.++.+.+++.+.+... .+... .+ .....+++++++++++|.+.+ ++++| +|+++
T Consensus 45 ~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~-~~~~~-~~-----~~~~~~~l~~~la~~~~~~~~-~v~~~-~gg~~ 115 (395)
T 1vef_A 45 NEYIDCVGGYGVANLGHGNPEVVEAVKRQAETL-MAMPQ-TL-----PTPMRGEFYRTLTAILPPELN-RVFPV-NSGTE 115 (395)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHC-CCCCT-TS-----CCHHHHHHHHHHHHTSCTTEE-EEEEE-SSHHH
T ss_pred CEEEEccCccccccCCCCCHHHHHHHHHHHHhC-CCCcc-cc-----CCHHHHHHHHHHHHhcCCCcC-EEEEc-CcHHH
Confidence 457887543 567889999998887532 11111 11 234678899999999987655 89998 56666
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCC-chhHHHHHHcCCe------------EEEEecCCCCCCCH
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEH-HSNLLSWRQSLAE------------VVEIGLDDNGLLDI 218 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h-~s~~~~~~~~G~~------------vv~v~~~~~~~ld~ 218 (625)
++..++.++. .+.++++ |++.+..| .+....++..|++ +..++. .|+
T Consensus 116 a~~~al~~~~-------------~~~~~~~--vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-----~d~ 175 (395)
T 1vef_A 116 ANEAALKFAR-------------AHTGRKK--FVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-----NDV 175 (395)
T ss_dssp HHHHHHHHHH-------------HHHSCCE--EEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-----TCH
T ss_pred HHHHHHHHHH-------------HHhCCCe--EEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCC-----CcH
Confidence 7777766541 0135664 55555554 4454455555664 333432 489
Q ss_pred HHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc----ccCCCCCCCCC
Q 043646 219 EALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK----INLRSRNIDGY 289 (625)
Q Consensus 219 ~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~----id~~~~~~~~~ 289 (625)
++|+++++ +++++|++++++|+||.+.| +++|+++|++||+++|+|++++ ++... ++.... .+
T Consensus 176 ~~l~~~i~-----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~---~~ 247 (395)
T 1vef_A 176 EALKRAVD-----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGI---VP 247 (395)
T ss_dssp HHHHHHCC-----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC---CC
T ss_pred HHHHHHhc-----cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCC---CC
Confidence 99999987 57899999988999999988 9999999999999999999988 32211 121122 46
Q ss_pred cEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHH--HHHHHH
Q 043646 290 DAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQ--MIRAAL 367 (625)
Q Consensus 290 D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~--~~~aal 367 (625)
|++ |+||+++++.++|++++++++ .+.+.+...+ . ..+++..+ .+.+++
T Consensus 248 d~~--s~sK~~~~g~~~G~~~~~~~~--~~~l~~~~~~------------------------~-~~~~~~~~~~a~~~al 298 (395)
T 1vef_A 248 DIL--TLAKALGGGVPLGVAVMREEV--ARSMPKGGHG------------------------T-TFGGNPLAMAAGVAAI 298 (395)
T ss_dssp SEE--EECGGGGTTSSCEEEEEEHHH--HHTSCTTSSC------------------------C-SSTTCHHHHHHHHHHH
T ss_pred CEE--EEcccccCCCceEEEEehHHH--HhhhccCCcC------------------------C-CcCCCHHHHHHHHHHH
Confidence 877 558999876679999999886 3333321000 0 01122222 223444
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCc--EEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHH
Q 043646 368 AFWVKEYIGYEVIKKQEDVYIESALGRILPNQN--IQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVAT 445 (625)
Q Consensus 368 ~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~g--v~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 445 (625)
+.+ +. +.+.++.+.+++++.+.|.+++. +.... ..+.++.+.+.. +..++.+
T Consensus 299 ~~~--~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~g~~~~~~~~~-----------------~~~~l~~ 352 (395)
T 1vef_A 299 RYL--ER---TRLWERAAELGPWFMEKLRAIPSPKIREVR----GMGLMVGLELKE-----------------KAAPYIA 352 (395)
T ss_dssp HHH--HH---HTTHHHHHHHHHHHHHHHHTSCCTTEEEEE----EETTEEEEEESS-----------------CSHHHHH
T ss_pred HHH--Hh---CCHHHHHHHHHHHHHHHHHHhhcCceEEEE----EEEEEEEEEEcC-----------------hHHHHHH
Confidence 443 21 34567788888899999877632 22111 123455554421 1357888
Q ss_pred HhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 446 LFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 446 ~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.|.+++||.++++. ++++||+++++++++|+++++++|++++
T Consensus 353 ~l~~~~gi~v~~~~---------------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 353 RLEKEHRVLALQAG---------------------------------PTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp HHHHHHCEECEESS---------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCeEEecCC---------------------------------CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 88635799998641 3789999999999999999999999865
No 141
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.92 E-value=5.1e-23 Score=217.93 Aligned_cols=316 Identities=12% Similarity=0.051 Sum_probs=209.1
Q ss_pred eEeccCCCCCc------chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTASGR------SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~~~------~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
..|+|.+++.+ .++.+.+++.+.+... .++.. .|. .....++++++++++|.+ + ++++| +|+++
T Consensus 28 ~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~-~~~~~-~y~-----~~~~~~l~~~la~~~g~~-~-~v~~~-~g~t~ 97 (375)
T 2eh6_A 28 KEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKL-LHVSN-LYE-----NPWQEELAHKLVKHFWTE-G-KVFFA-NSGTE 97 (375)
T ss_dssp CEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHC-SCCCT-TBC-----CHHHHHHHHHHHHTSSSC-E-EEEEE-SSHHH
T ss_pred CEEEEcCCcccccccCCCCHHHHHHHHHHHHhc-cccCc-ccC-----CHHHHHHHHHHHhhcCCC-C-eEEEe-CchHH
Confidence 46888775443 6789999998877432 23222 121 123567889999999983 4 79998 66777
Q ss_pred HHHHHHHHhcccccchhhhhhhhcc---CCC-CceEEEEcCCCCchhHHHHHHcCCe-------------EEEEecCCCC
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSL---RDE-ERWVVFLGPYEHHSNLLSWRQSLAE-------------VVEIGLDDNG 214 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l---~~g-d~~~Vlv~~~~h~s~~~~~~~~G~~-------------vv~v~~~~~~ 214 (625)
++..++.++.. .. ++| |+ |+++.+.|+.....+...+.. +..++.
T Consensus 98 a~~~~~~~~~~------------~~~~~~~g~~~--vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 159 (375)
T 2eh6_A 98 SVEAAIKLARK------------YWRDKGKNKWK--FISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL---- 159 (375)
T ss_dssp HHHHHHHHHHH------------HHHHTTCCCCE--EEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT----
T ss_pred HHHHHHHHHHH------------HhccCCCCCCE--EEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC----
Confidence 77777654210 02 466 64 777777766554444433221 444443
Q ss_pred CCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc--ccCCCCCCC
Q 043646 215 LLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK--INLRSRNID 287 (625)
Q Consensus 215 ~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~--id~~~~~~~ 287 (625)
.|+++|+++++ +++++|++++++|+||.+.| +++|.++|++||+++|+|++++ ++..+ .++..++.
T Consensus 160 -~d~~~l~~~l~-----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~- 232 (375)
T 2eh6_A 160 -NDIDSVYKLLD-----EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNL- 232 (375)
T ss_dssp -TCHHHHHTTCC-----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-
T ss_pred -chHHHHHHHhc-----CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCC-
Confidence 48999998887 57999999999999999988 9999999999999999999998 54432 23333311
Q ss_pred CCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH-HHH
Q 043646 288 GYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI-RAA 366 (625)
Q Consensus 288 ~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~-~aa 366 (625)
.+|++++| |+++++.++|++++++++ .+.+.+...+ ...+++++.+.+ .++
T Consensus 233 ~~d~~s~S--K~~~~g~~~G~~~~~~~~--~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~ 284 (375)
T 2eh6_A 233 KPDVIALA--KGLGGGVPIGAILAREEV--AQSFTPGSHG------------------------STFGGNPLACRAGTVV 284 (375)
T ss_dssp CCSEEEEC--GGGGTTSCCEEEEEEHHH--HTTCCTTSCC------------------------CSSTTCHHHHHHHHHH
T ss_pred CCCEEEEc--ccccCCCCeEEEEEcHHH--HhhhcCCCCC------------------------CCCCCCHHHHHHHHHH
Confidence 37888766 999877779999999887 3444332111 011333333322 223
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHH
Q 043646 367 LAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATL 446 (625)
Q Consensus 367 l~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ 446 (625)
++.. + .+.++.+++++++.+.|.+++...+. + .+.++.+.+ +. +..++++.
T Consensus 285 l~~~--~-----~~~~~~~~~~~~l~~~L~~~~~~~~~-~----~g~~~~~~~-~~----------------~~~~~~~~ 335 (375)
T 2eh6_A 285 VDEV--E-----KLLPHVREVGNYFKEKLKELGKGKVK-G----RGLMLGLEL-ER----------------ECKDYVLK 335 (375)
T ss_dssp HHHH--H-----HHHHHHHHHHHHHHHHHHHTTSSEEE-E----ETTEEEEEC-SS----------------CCHHHHHH
T ss_pred HHHH--H-----HHHHHHHHHHHHHHHHHHHHhcCCce-E----EEEEEEEEE-cC----------------cHHHHHHH
Confidence 3322 1 56777888889999988776542221 1 234444433 21 14578888
Q ss_pred hhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 447 FNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 447 L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
|.+ +||.++++. ++++||++++.++++|+++++++|+++
T Consensus 336 l~~-~gi~~~~~~---------------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 336 ALE-KGLLINCTA---------------------------------GKVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp HHH-TTEECEEET---------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHH-CCCEEecCC---------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 865 799998531 378999999999999999999999875
No 142
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.7e-23 Score=227.59 Aligned_cols=346 Identities=8% Similarity=0.002 Sum_probs=223.0
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
.|+.+.+++.+.+... ....|....+..++.+++.+++++.+|.+ ++ +|++| +|+++++..++.++
T Consensus 71 ~~~~v~~a~~~~~~~~----~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~-~v~~t-~G~~~al~~~~~~l------ 138 (447)
T 3b46_A 71 PPQFAIKEAQKALDIP----MVNQYSPTRGRPSLINSLIKLYSPIYNTELKAE-NVTVT-TGANEGILSCLMGL------ 138 (447)
T ss_dssp CCHHHHHHHHHHTTSG----GGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGG-GEEEE-SHHHHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHhCc----CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChh-hEEEe-CCHHHHHHHHHHHH------
Confidence 5688999998877531 11112111123445555555555555653 34 89998 78889899988877
Q ss_pred hhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC------------CCCCHHHHHHHHHHhhhCCCC
Q 043646 167 IMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN------------GLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~------------~~ld~~~L~~~l~~~~~~~~~ 234 (625)
+++||+ |++..+.|+++...++..|++++.++++.+ +.+|+++|+++++ +++
T Consensus 139 ---------~~~gd~--Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~-----~~~ 202 (447)
T 3b46_A 139 ---------LNAGDE--VIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT-----SKT 202 (447)
T ss_dssp ---------CCTTCE--EEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC-----TTE
T ss_pred ---------cCCCCE--EEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhc-----cCC
Confidence 578885 888889999998888889999999998643 4689999999886 579
Q ss_pred eEEEEecccCcccccc---CHHHHHHHHHHcCCEEEEeccCcCCCc---cccCCCC--CCCCCcEEEEcCCCCCCCCC-C
Q 043646 235 MLGSFSACSNVTGIYS---DTRSIARLLHQYGGFACFDFAASGPYV---KINLRSR--NIDGYDAIFLATHKFLGGPG-T 305 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~---~l~~I~~la~~~g~~vivD~A~~~g~~---~id~~~~--~~~~~D~v~~S~hK~lggp~-g 305 (625)
++|++++++||||.+. ++++|+++|++||+++|+|++++.... ...+..+ +..+.|+++.|+||+|+.|+ .
T Consensus 203 ~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r 282 (447)
T 3b46_A 203 KAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWR 282 (447)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSC
T ss_pred eEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcchh
Confidence 9999999999999996 488999999999999999999875321 1122111 01257899999999997443 3
Q ss_pred ceEEEE-eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH-HHHHHHHHHHhhcCHHHHHHH
Q 043646 306 PGILLI-SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM-IRAALAFWVKEYIGYEVIKKQ 383 (625)
Q Consensus 306 ~G~l~v-~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~-~~aal~~~~~~~~g~~~i~~~ 383 (625)
+|++++ ++++.+ .+.. .......+.++..+. +.++++... .....+.+.++
T Consensus 283 iG~~~~~~~~l~~--~l~~------------------------~~~~~~~~~~~~~~~a~~~aL~~~~-~~~~~~~~~~~ 335 (447)
T 3b46_A 283 IGWVLSLNAELLS--YAAK------------------------AHTRICFASPSPLQEACANSINDAL-KIGYFEKMRQE 335 (447)
T ss_dssp CEEEECSCHHHHH--HHHH------------------------HHHHHTSSCCHHHHHHHHHHHHHHH-HHTHHHHHHHH
T ss_pred hEEEEeCCHHHHH--HHHH------------------------HHhhccCCCChHHHHHHHHHHhCCc-chHHHHHHHHH
Confidence 899999 777621 1100 011111222333322 223333221 12235667788
Q ss_pred HHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCc-cccccCCCCCChHHHHHHhhhhcCeeeecCCCCC
Q 043646 384 EDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPE-NMKIERNKPLHGPFVATLFNDLFGIQARGGCACA 462 (625)
Q Consensus 384 ~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~-~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~ 462 (625)
.+.+++++.+.|.++ ++++..+. .+.+.+.-.+....... .....-+...+..++++.|.+++||.+.+|..|.
T Consensus 336 ~~~~~~~l~~~L~~~-g~~~~~~~----~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~ 410 (447)
T 3b46_A 336 YINKFKIFTSIFDEL-GLPYTAPE----GTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFY 410 (447)
T ss_dssp HHHHHHHHHHHHHHH-TCCEECCS----BSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGS
T ss_pred HHHHHHHHHHHHHHC-CCeecCCC----eeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhC
Confidence 888899999999876 67766542 34444443332100000 0000000012345788878766899999887664
Q ss_pred chhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 463 GPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
.+.... ..++++||+++. ++++++++++.|++
T Consensus 411 ~~~~~~----------------------~~~~~iRls~~~--~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 411 IKEHEK----------------------AAENLLRFAVCK--DDAYLENAVERLKL 442 (447)
T ss_dssp CGGGGG----------------------GGTTEEEEECCS--CHHHHHHHHHHGGG
T ss_pred CCCccC----------------------CCCCEEEEEEeC--CHHHHHHHHHHHHH
Confidence 221100 014899999973 89999999999876
No 143
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.91 E-value=1e-23 Score=227.63 Aligned_cols=328 Identities=14% Similarity=0.095 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH-
Q 043646 120 TKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW- 198 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~- 198 (625)
....+++++++++++|.+ . .++++ +| ++++..++.++ +++||+ |+++..+|+++...|
T Consensus 57 ~~~~~~l~~~la~~~g~~-~-~v~~~-sG-t~A~~~~l~~~---------------~~~gd~--vi~~~~~~~~~~~~~~ 115 (421)
T 2ctz_A 57 NPTVDVLEKRLAALEGGK-A-ALATA-SG-HAAQFLALTTL---------------AQAGDN--IVSTPNLYGGTFNQFK 115 (421)
T ss_dssp CHHHHHHHHHHHHHHTCS-E-EEEES-SH-HHHHHHHHHHH---------------CCTTCE--EEECSCCCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCC-c-eEEec-CH-HHHHHHHHHHH---------------hCCCCE--EEEeCCCchHHHHHHH
Confidence 356788999999999986 2 45554 77 66677776665 467885 999999999998887
Q ss_pred ---HHcCCeEEEE-ecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccC-c
Q 043646 199 ---RQSLAEVVEI-GLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAA-S 273 (625)
Q Consensus 199 ---~~~G~~vv~v-~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~-~ 273 (625)
+..|++++.+ +.+ |+++|+++|+ +++++|++++++|+||.+.|+++|+++|+++|+++|+|+++ +
T Consensus 116 ~~~~~~g~~~~~~~~~~-----d~~~l~~~i~-----~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~ 185 (421)
T 2ctz_A 116 VTLKRLGIEVRFTSREE-----RPEEFLALTD-----EKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGM 185 (421)
T ss_dssp THHHHTTCEEEECCTTC-----CHHHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGG
T ss_pred HHHHHcCCEEEEECCCC-----CHHHHHHhhc-----cCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccc
Confidence 5679999988 654 8999999987 58999999999999999999999999999999999999999 8
Q ss_pred CCCccccCCCCCCCCCcEEEEcCCCCCCCCCC-ceEEEEec-c--c-c-ccCCCCCcccCCceEEeeccccccccccccc
Q 043646 274 GPYVKINLRSRNIDGYDAIFLATHKFLGGPGT-PGILLISK-A--L-Y-QLGSSPPSTCGGGTVNYVNAFDEKDTLYLED 347 (625)
Q Consensus 274 ~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g-~G~l~v~~-~--~-~-~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (625)
.|+....+ .. ++|++++|+||++++|++ +|++++.+ + + . .+..+.+...|+....+...+. ...+..
T Consensus 186 ~g~~~~~~-~~---~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~--~~~~~~- 258 (421)
T 2ctz_A 186 GGYLLRPL-AW---GAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFG--ELAFIV- 258 (421)
T ss_dssp GGTSCCGG-GG---TCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHG--GGHHHH-
T ss_pred ccccCCcc-cc---CCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcc--hhHHHH-
Confidence 77532112 22 789999999999998874 77777752 2 1 0 0011223222322211110000 000000
Q ss_pred hhhhhc----CC-ChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeC-CCC-------------
Q 043646 348 IEEREN----GG-TPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLG-NTS------------- 408 (625)
Q Consensus 348 ~~~~~~----~g-t~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~-~~~------------- 408 (625)
..+++ .| ..+.... ++... .........++..++++++.+.|.++|+++++. |..
T Consensus 259 -~~r~~~~~~~g~~~~~~~a---~~~~~--~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~ 332 (421)
T 2ctz_A 259 -KARVDGLRDQGQALGPFEA---WVVLL--GMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYF 332 (421)
T ss_dssp -HHHHTHHHHHCCCCCHHHH---HHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHH
T ss_pred -HHHHHHHHhcCCCCCHHHH---HHHHc--CcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhc
Confidence 11111 12 1121111 11111 111123334455578999999999999998763 211
Q ss_pred -CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHH
Q 043646 409 -VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAI 484 (625)
Q Consensus 409 -~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~ 484 (625)
..++++++|.+.... -....+.+.| +.++|.++.|..|+. |....+..+..+...+
T Consensus 333 ~~~~g~ivsf~l~~~~--------------~~~~~~~~~l-~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~----- 392 (421)
T 2ctz_A 333 KGKPGAVLTFGLKGGY--------------EAAKRFISRL-KLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQ----- 392 (421)
T ss_dssp TTCCCSEEEEEETTHH--------------HHHHHHHHTC-SSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHH-----
T ss_pred cCCCceEEEEEeCCCH--------------HHHHHHHHhC-CcceecccCCCCCceeeCCcccccccCCHHHHHh-----
Confidence 246789999885310 0122344444 335667777754432 1111111222211111
Q ss_pred HhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 485 QKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 485 ~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
.|+.++.||+|++.+ |++.+++.|++.
T Consensus 393 ----~g~~~~~vRlS~g~e----~~~~li~~l~~a 419 (421)
T 2ctz_A 393 ----AGVSPEMVRLSVGLE----HVEDLKAELKEA 419 (421)
T ss_dssp ----HTCCTTEEEEECCSS----CHHHHHHHHHHH
T ss_pred ----cCCCCCeEEEEeCCC----CHHHHHHHHHHH
Confidence 244569999999875 555566655543
No 144
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.91 E-value=8.9e-23 Score=225.04 Aligned_cols=349 Identities=11% Similarity=0.015 Sum_probs=223.6
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
.|..+++++.+.+....+ .....|....+..++.+++.+++.+..|. +++ +|++| +|+++++..++.++
T Consensus 107 ~p~~~~~~a~~~l~~~~~-~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~~t-~G~~~al~~~~~~l------ 177 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPG-RATGAYSHSQGIHGLRDAIASGIASRDGFPANAD-DIFLT-DGASPGVHLMMQLL------ 177 (500)
T ss_dssp SCHHHHHHHHHHHTTSTT-SCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGG-GEEEE-SSSHHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHcCCC-CcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcc-cEEEc-CCHHHHHHHHHHHH------
Confidence 455566666666654211 01222333334556667777777766664 344 89998 78888899988887
Q ss_pred hhhhhhhhcc-CCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC--CCCCHHHHHHHHHHhhh-CCCCeEEEEecc
Q 043646 167 IMRDKLITSL-RDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN--GLLDIEALRSQLELYKA-AKRPMLGSFSAC 242 (625)
Q Consensus 167 ~~~~~~~~~l-~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--~~ld~~~L~~~l~~~~~-~~~~~lv~~~~~ 242 (625)
+ ++||+ |+++.+.|+++...++..|++++.++++++ +.+|+++|+++|++... +.++++|+++++
T Consensus 178 ---------~~~~gd~--Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p 246 (500)
T 3tcm_A 178 ---------IRNEKDG--ILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINP 246 (500)
T ss_dssp ---------CCSTTEE--EEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESS
T ss_pred ---------cCCCCCE--EEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECC
Confidence 3 57775 999999999999999999999999998864 48999999999985221 126899999999
Q ss_pred cCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc-----cccCC----CCC--CCCCc-EEEEcCCCCC-CCCC-C
Q 043646 243 SNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV-----KINLR----SRN--IDGYD-AIFLATHKFL-GGPG-T 305 (625)
Q Consensus 243 ~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~-----~id~~----~~~--~~~~D-~v~~S~hK~l-ggp~-g 305 (625)
+||||.+.+ +++|+++|++||+++++|++++.... ..++. .++ .+... +++.|++|.| |.|+ .
T Consensus 247 ~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R 326 (500)
T 3tcm_A 247 GNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKR 326 (500)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGC
T ss_pred CCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccc
Confidence 999999977 56677779999999999999775322 11111 010 01222 5566999998 4232 2
Q ss_pred ceEEEE---eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHH----------HH
Q 043646 306 PGILLI---SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALA----------FW 370 (625)
Q Consensus 306 ~G~l~v---~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~----------~~ 370 (625)
+|++++ ++++.. .+. ..+....+++..+... .++. .+
T Consensus 327 ~G~~~~~~~~~~~~~--~l~--------------------------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 378 (500)
T 3tcm_A 327 GGYFEITGFSAPVRE--QIY--------------------------KIASVNLCSNITGQILASLVMNPPKASDESYASY 378 (500)
T ss_dssp CEEEEEESCCTTHHH--HHH--------------------------HHHHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHH
T ss_pred eEEEEEeCCCHHHHH--HHH--------------------------HHHhcccCCCHHHHHHHHHHhcCccccchhHHHH
Confidence 699988 555521 110 0001122333333222 2221 01
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChH-HHHHHhhh
Q 043646 371 VKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGP-FVATLFND 449 (625)
Q Consensus 371 ~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~-~v~~~L~~ 449 (625)
. ...+.+.++.+++++++.+.|.++|++++..+ .++++.|........ .....+..++... .++..+++
T Consensus 379 ~---~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~----~g~~~~~~~~~lp~~---~~~~~~~~g~~~~~~~~~~ll~ 448 (500)
T 3tcm_A 379 K---AEKDGILASLARRAKALEHAFNKLEGITCNEA----EGAMYVFPQICLPQK---AIEAAKAANKAPDAFYALRLLE 448 (500)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHTSTTEECCCC----CBTTEECCEECCCHH---HHHHHHHHTSCHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHhcCCCcEEecC----CeEEEEeeeecCchh---hHHHHHhcCCCcHHHHHHHHHH
Confidence 1 11346677788889999999999999998765 346666532211000 0000000011222 23444446
Q ss_pred hcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 450 LFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 450 ~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
++||.+.+|..|+.+. .++++|++++ ++++++++++++|++++++.
T Consensus 449 ~~gI~v~pg~~f~~~~--------------------------g~~~iRis~~--~~~e~i~~~i~~l~~~~~~~ 494 (500)
T 3tcm_A 449 STGIVVVPGSGFGQVP--------------------------GTWHFRCTIL--PQEDKIPAVISRFTVFHEAF 494 (500)
T ss_dssp HHCEECEESTTTCCCT--------------------------TCCBEEEESC--SCTTTHHHHHHHHHHHHHHH
T ss_pred HCCEEEEeCcccCCCC--------------------------CCCEEEEEEC--CCHHHHHHHHHHHHHHHHHH
Confidence 6899999999886321 2478999998 78899999999999987664
No 145
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.91 E-value=2e-23 Score=237.69 Aligned_cols=320 Identities=12% Similarity=0.084 Sum_probs=219.8
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH-HHH
Q 043646 122 MVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS-WRQ 200 (625)
Q Consensus 122 ~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~-~~~ 200 (625)
...++++.+|+++|++. .++++ +|+++++..++.++ +++||+ |+++...|.|+..+ ++.
T Consensus 174 ~i~e~e~~lA~~~gae~--~i~v~-nGtt~an~~ai~al---------------~~pGD~--VLv~~~~H~S~~~~~~~l 233 (730)
T 1c4k_A 174 PAVAAEKHAARVYNADK--TYFVL-GGSSNANNTVTSAL---------------VSNGDL--VLFDRNNHKSVYNSALAM 233 (730)
T ss_dssp HHHHHHHHHHHHTTCSE--EEEES-SHHHHHHHHHHHHH---------------CCTTCE--EEEETTCCHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHCCCc--EEEEC-CHHHHHHHHHHHHh---------------cCCCCE--EEEcCCchHHHHHHHHHH
Confidence 56889999999999863 45565 89988888888877 578985 99999999999988 788
Q ss_pred cCCeEEEEecCCC-----CCCCHHHH-----HHHHHHh-hh---CCCC-eEEEEecccCccccccCHHHHHHHHHHcCCE
Q 043646 201 SLAEVVEIGLDDN-----GLLDIEAL-----RSQLELY-KA---AKRP-MLGSFSACSNVTGIYSDTRSIARLLHQYGGF 265 (625)
Q Consensus 201 ~G~~vv~v~~~~~-----~~ld~~~L-----~~~l~~~-~~---~~~~-~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~ 265 (625)
.|++++.++.+.+ +.+|+++| +++|++. .. ..++ ++++++++ |++|.+.|+++|+++||++|++
T Consensus 234 ~Ga~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~ 312 (730)
T 1c4k_A 234 AGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDY 312 (730)
T ss_dssp TCCEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSE
T ss_pred CCCEEEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCe
Confidence 8999999876432 34688888 8887631 00 1123 89999987 6899999999999999999999
Q ss_pred EEEeccCcCCC--c-------cccCCCCCCCCCc----EEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEE
Q 043646 266 ACFDFAASGPY--V-------KINLRSRNIDGYD----AIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVN 332 (625)
Q Consensus 266 vivD~A~~~g~--~-------~id~~~~~~~~~D----~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~ 332 (625)
+++|+||+.+. . +++...+ ++| +++.|+||+++||.+.|+++++++. +.... ..+
T Consensus 313 livDeAh~~~~~f~~~~~g~~~l~~~~~---g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~--l~g~~------~~i- 380 (730)
T 1c4k_A 313 IEFDSAWVGYEQFIPMMRNSSPLLIDDL---GPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSH--IKGQL------RYC- 380 (730)
T ss_dssp EEEECTTCCGGGSSGGGGGGCTTSCCCC---CTTSCEEEEEECHHHHSSCCTTCEEEEEECGG--GTTST------TCC-
T ss_pred EEEEcccccccccCcccCCcCccccccc---CCCCCCEEEEECCCCCCCCCCCEEEEEecchh--hcCcc------ccc-
Confidence 99999987531 1 1222222 667 9999999999999887999999876 21100 000
Q ss_pred eeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhh-cCHHHHHHHHHHHHHHHHHhhCC-CCcEEEeCCCC
Q 043646 333 YVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEY-IGYEVIKKQEDVYIESALGRILP-NQNIQVLGNTS 408 (625)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~-~g~~~i~~~~~~l~~~l~~~L~~-l~gv~v~~~~~ 408 (625)
+...+......+..++|+...+++ ++++++ .. .| +...++...+++++++.|.+ +++++++++..
T Consensus 381 --------~~~~~~~~~~~~~stsp~~~~iaal~aA~~~l--~~~~g-~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~ 449 (730)
T 1c4k_A 381 --------DHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQ--EGEAG-RKLWHDLLITTIEARKKLIKAGSMFRPFVPPV 449 (730)
T ss_dssp --------CHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH--SHHHH-HHHHHHHHHHHHHHHHHHHHTTCSSEESSCSE
T ss_pred --------CHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHH--Hhhhh-HHHHHHHHHHHHHHHHHHhhhCCCeEEccccc
Confidence 000111112234566777655443 344443 22 23 34456788889999999987 78999887631
Q ss_pred C-------------------------------C-C-c------ce-EEEEeccCCCCCCccccccCCCCCChHHHHHHhh
Q 043646 409 V-------------------------------K-R-Q------AI-LSFLVYSTTNSSPENMKIERNKPLHGPFVATLFN 448 (625)
Q Consensus 409 ~-------------------------------~-~-~------~i-~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~ 448 (625)
. . . . |+ +++.. ++.+.. .+.-+..++++.++.+.|.
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~-pg~~~~---~g~~~~~g~~~~~l~~~L~ 525 (730)
T 1c4k_A 450 VNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTT-PGINPE---TGDYEDFGVPATIVANYLR 525 (730)
T ss_dssp ETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEEC-SSEETT---TTEECSSCCCHHHHHHHHH
T ss_pred cccccccccccccccccchhhccCccchhccccccCCcccccCCeEEEEEe-CCcccc---cccccccCCCHHHHHHHHH
Confidence 0 0 0 1 11 33333 110000 0000224567889999996
Q ss_pred hhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 449 DLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 449 ~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
+ +||.+... ..+.+|++++..+|++|+++++++|+++.+..
T Consensus 526 e-~GI~v~~~---------------------------------~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~~ 566 (730)
T 1c4k_A 526 D-HGIIPEKS---------------------------------DLNSILFLMTPAETPAKMNNLITQLLQLQRLI 566 (730)
T ss_dssp H-TTCCCSEE---------------------------------CSSEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred H-CCcEEEEC---------------------------------CCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 6 59988621 13789999999999999999999999987654
No 146
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.91 E-value=2.5e-22 Score=214.18 Aligned_cols=325 Identities=12% Similarity=0.092 Sum_probs=209.7
Q ss_pred eEeccCCCCC------cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTASG------RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~~------~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
.-|+|..++. ..++.|.+++.+.+......... ......+++++++++++| .+ +++|+++ .++
T Consensus 36 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-------~~~~~~~~l~~~la~~~g--~~-~v~~~~~-gt~ 104 (392)
T 3ruy_A 36 NRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRA-------FHSDQLGPWYEKVAKLTN--KE-MVLPMNT-GAE 104 (392)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTT-------SEETTHHHHHHHHHHHHT--CS-EEEEESS-HHH
T ss_pred CEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccc-------cCCHHHHHHHHHHHHhcC--CC-EEEEeCc-HHH
Confidence 3488876532 25789999999888543211111 123456788999999998 33 7899854 555
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC-------------eEEEEecCCCCCCCH
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA-------------EVVEIGLDDNGLLDI 218 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-------------~vv~v~~~~~~~ld~ 218 (625)
++..++.++... .....+..+++. .|++....|++....+...+. .+..++.+ |+
T Consensus 105 a~~~al~~~~~~------~~~~~~~~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~ 172 (392)
T 3ruy_A 105 AVETAIKTARRW------AYDVKKVEANRA-EIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG-----DL 172 (392)
T ss_dssp HHHHHHHHHHHH------HHHTSCCCTTCC-EEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTT-----CH
T ss_pred HHHHHHHHHHHh------hhhccCCCCCCc-EEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcc-----cH
Confidence 455555543100 000001113332 478877777766555443322 25555543 89
Q ss_pred HHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc--ccCCCCCCCCCcE
Q 043646 219 EALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK--INLRSRNIDGYDA 291 (625)
Q Consensus 219 ~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~--id~~~~~~~~~D~ 291 (625)
++|+++++ +++++|++++++||||.+.| +++|.++|++||+++|+|++++ ++... ......+ ...|+
T Consensus 173 ~~l~~~l~-----~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~-~~~d~ 246 (392)
T 3ruy_A 173 EALKAAIT-----PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDN-VTPDM 246 (392)
T ss_dssp HHHHHHCC-----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGT-CCCSE
T ss_pred HHHHHHhc-----cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccC-CCCCE
Confidence 99999987 58999999999999999998 9999999999999999999985 33211 1111111 15688
Q ss_pred EEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHH--HHHHHHH
Q 043646 292 IFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQ--MIRAALA 368 (625)
Q Consensus 292 v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~--~~~aal~ 368 (625)
+++| |++++. ..+|++++++++ .+.+.+...++. .+.+... .+.++++
T Consensus 247 ~~~S--K~l~gG~~~~G~~~~~~~~--~~~~~~~~~~~~-------------------------~~~~~~~~~a~~~~l~ 297 (392)
T 3ruy_A 247 YILG--KALGGGVFPISCAAANRDI--LGVFEPGSHGST-------------------------FGGNPLACAVSIAALE 297 (392)
T ss_dssp EEEC--GGGGTTTSCCEEEEECHHH--HTTCCTTSSCCS-------------------------STTCHHHHHHHHHHHH
T ss_pred EEEc--hhhhCChhhhEEEEECHHH--HhhhccCCcCCC-------------------------CCCCHHHHHHHHHHHH
Confidence 8776 998752 347999998887 334433221110 1222222 2233344
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHhhCCC--CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHH
Q 043646 369 FWVKEYIGYEVIKKQEDVYIESALGRILPN--QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATL 446 (625)
Q Consensus 369 ~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l--~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ 446 (625)
.. + .+.+.++.+.+++++.+.|.++ +.+....+ .+.++.+.+ +. +..++.+.
T Consensus 298 ~~--~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----~g~~~~~~~-~~----------------~~~~l~~~ 351 (392)
T 3ruy_A 298 VL--E---EEKLTERSLQLGEKLVGQLKEIDNPMITEVRG----KGLFIGIEL-NE----------------PARPYCEQ 351 (392)
T ss_dssp HH--H---HTTHHHHHHHHHHHHHHHHTTCCCTTEEEEEE----ETTEEEEEE-SS----------------CSHHHHHH
T ss_pred HH--H---hhhHHHHHHHHHHHHHHHHHHhcCCCceEEEe----eeeEEEEEE-cc----------------hHHHHHHH
Confidence 33 2 1467778888899999999886 44554433 345666654 21 24578888
Q ss_pred hhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 447 FNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 447 L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
|. ++||.+++|. ++++||++++.++++|+++++++|++++
T Consensus 352 l~-~~gi~v~~~~---------------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 352 LK-AAGLLCKETH---------------------------------ENVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp HH-TTTEECCCBT---------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HH-HCCcEEecCC---------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 86 4799998642 3889999999999999999999999875
No 147
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.91 E-value=2.5e-23 Score=225.03 Aligned_cols=344 Identities=12% Similarity=0.058 Sum_probs=217.6
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh----CCCCCCcEEEeCChHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCL----GGGQADAIIFCGAGTT 150 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~----g~~~~~~vift~sGtt 150 (625)
+.+++|..+... +.|+.|.+++.+.+.......+...|..... ..++++.+++++ +.+++ +|+|| +|++
T Consensus 56 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g----~~~l~~~ia~~~~~~~~~~~~-~i~~t-~G~~ 129 (432)
T 3ei9_A 56 AQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQG----AKPLRAAIAKTFYGGLGIGDD-DVFVS-DGAK 129 (432)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTC----CHHHHHHHHHHHHTTTTCCGG-GEEEE-SCHH
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCC----CHHHHHHHHHHHHccCCCCcc-eEEEC-CChH
Confidence 457788766544 5778999999887753221111111211112 234555555554 77665 89998 7899
Q ss_pred HHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC------------eEEEEecCCCC--CC
Q 043646 151 AAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA------------EVVEIGLDDNG--LL 216 (625)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~------------~vv~v~~~~~~--~l 216 (625)
+++..+ ..+ +++||. |+++.+.|+++...++..|+ +++.++++..+ ..
T Consensus 130 ~al~~l-~~l---------------~~~gd~--Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (432)
T 3ei9_A 130 CDISRL-QVM---------------FGSNVT--IAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFP 191 (432)
T ss_dssp HHHHHH-HHH---------------HCTTCC--EEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSC
T ss_pred HHHHHH-HHH---------------cCCCCE--EEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcC
Confidence 988875 333 468886 99999999999888887774 68888887533 33
Q ss_pred CHHHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc---cccCCCCC-CCCC
Q 043646 217 DIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---KINLRSRN-IDGY 289 (625)
Q Consensus 217 d~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~---~id~~~~~-~~~~ 289 (625)
|++ + .+++++|++++++||||.+.+ +++|+++|++||+++|+|++|+.... +..+.... ..+.
T Consensus 192 ~l~---~-------~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~ 261 (432)
T 3ei9_A 192 DLS---T-------VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEV 261 (432)
T ss_dssp CGG---G-------CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGT
T ss_pred Chh---h-------CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCe
Confidence 422 1 157899999999999999976 56677779999999999999884321 22222211 1245
Q ss_pred cEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHH
Q 043646 290 DAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALA 368 (625)
Q Consensus 290 D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~ 368 (625)
++++.|++|+||.++ .+|++++++++.. ....+.. ..+.. ......++++..+... +.+
T Consensus 262 ~i~~~S~SK~~g~~G~r~G~~~~~~~~~~-~~~~~~~-----------------~~~~~-~~~~~~~~~~~~~~~a-~~~ 321 (432)
T 3ei9_A 262 AMETASFSNYAGFTGVRLGWTVIPKKLLY-SDGFPVA-----------------KDFNR-IICTCFNGASNISQAG-ALA 321 (432)
T ss_dssp EEEEEESHHHHCTTTTCCEEEECCTTCBC-TTSCBHH-----------------HHHHH-HHHHSCCCSCHHHHHH-HHH
T ss_pred EEEEecchhccCCcccceEEEEEChHHhh-cchHHHH-----------------HHHHH-HhccccCCCCHHHHHH-HHH
Confidence 688999999997443 4899998887620 0000000 00000 0111123333333221 122
Q ss_pred HHH-HhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHh
Q 043646 369 FWV-KEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLF 447 (625)
Q Consensus 369 ~~~-~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L 447 (625)
.+. ......+.+.++.+.+++++.+.|.++ ++++..+. . +.+.+...++ .+..++++.|
T Consensus 322 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~---~-~~~~~~~~~~---------------~~~~~~~~~l 381 (432)
T 3ei9_A 322 CLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-GYDVYGGK---N-APYVWVHFPN---------------QSSWDVFAEI 381 (432)
T ss_dssp HSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEECS---S-SSEEEEECTT---------------SCHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-CceecCCC---c-ceEEEEECCC---------------CCHHHHHHHH
Confidence 210 011224567788888899999999877 77776542 2 3333333332 2356777877
Q ss_pred hhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 448 NDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 448 ~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.+++||.+++|..|+ +. .++++|||+ ..+++++++.++.|++-...
T Consensus 382 l~~~gv~v~~g~~f~-~~--------------------------~~~~iRis~--~~~~e~l~~~l~rl~~~~~~ 427 (432)
T 3ei9_A 382 LEKTHVVTTPGSGFG-PG--------------------------GEGFVRVSA--FGHRENILEACRRFKQLYKH 427 (432)
T ss_dssp HHHHCEECEEGGGGC-GG--------------------------GTTEEEEEC--CSCHHHHHHHHHHHHHHHTT
T ss_pred HHHCCEEEeCchHhC-CC--------------------------CCCEEEEEe--cCCHHHHHHHHHHHHHHhhh
Confidence 777899999998775 21 248999997 45999999999999876443
No 148
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.91 E-value=1.5e-22 Score=216.41 Aligned_cols=308 Identities=16% Similarity=0.102 Sum_probs=207.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
+++......+++++.+++++|.+ .++++++| ++++..++.++ +++||+ |+++...|+++
T Consensus 60 y~r~~~~~~~~l~~~la~~~g~~---~~~~~~sG-t~A~~~al~~~---------------~~~gd~--Vi~~~~~y~~~ 118 (392)
T 3qhx_A 60 YARTGNPTRTALEAALAAVEDAA---FGRAFSSG-MAAADCALRAM---------------LRPGDH--VVIPDDAYGGT 118 (392)
T ss_dssp BTTTCCHHHHHHHHHHHHHTTCS---EEEEESSH-HHHHHHHHHHH---------------CCTTCE--EEEETTCCHHH
T ss_pred ccCCCChHHHHHHHHHHHHhCCC---cEEEECCH-HHHHHHHHHHH---------------hCCCCE--EEEeCCCcchH
Confidence 44444566788999999999985 46777566 56677776665 467885 99999999988
Q ss_pred HHHH----HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEec
Q 043646 195 LLSW----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 195 ~~~~----~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~ 270 (625)
...+ +..|++++.++.+ |+++|+++++ +++++|++++++|+||.+.|+++|+++|++||+++|+|+
T Consensus 119 ~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~ 188 (392)
T 3qhx_A 119 FRLIDKVFTGWNVEYTPVALA-----DLDAVRAAIR-----PTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDN 188 (392)
T ss_dssp HHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHhcCcEEEEeCCC-----CHHHHHHhhC-----CCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEEC
Confidence 7666 4569999999875 8999999987 589999999999999999999999999999999999999
Q ss_pred cCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEec-cccccCCCCCcccCCceEEeeccccccccccccc
Q 043646 271 AASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISK-ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLED 347 (625)
Q Consensus 271 A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (625)
+++.+...... .+ ++|+++.|+||+++++++ .|+++.++ ++.. .+..
T Consensus 189 ~~~~~~~~~~~-~~---~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~--~l~~------------------------ 238 (392)
T 3qhx_A 189 TFASPALQQPL-SL---GADVVLHSTTKYIGGHSDVVGGALVTNDEELDQ--SFAF------------------------ 238 (392)
T ss_dssp TTTCTTTCCGG-GG---TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHH--HHHH------------------------
T ss_pred CCcccccCChH-Hh---CCcEEEEcCccccCCCCCceEEEEEECcHHHHH--HHHH------------------------
Confidence 99876432222 23 789999999999997653 68888874 4411 1100
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC-------------CCCcc
Q 043646 348 IEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS-------------VKRQA 413 (625)
Q Consensus 348 ~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~-------------~~~~~ 413 (625)
..... ..+++.... .+++..+ + ..+...++..++++++.+.|.+.|.+. +..|.- ...++
T Consensus 239 ~~~~~-g~~~~~~~~-~~~~~~l--~--~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~ 312 (392)
T 3qhx_A 239 LQNGA-GAVPGPFDA-YLTMRGL--K--TLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGG 312 (392)
T ss_dssp HHHHH-CCCCCHHHH-HHHHHHH--T--THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCS
T ss_pred HHHhc-CCCCCHHHH-HHHHhhh--h--HHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCce
Confidence 00111 112222111 1111111 1 133444556667888888888888874 333311 11256
Q ss_pred eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCCCC
Q 043646 414 ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGYLG 490 (625)
Q Consensus 414 i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~g 490 (625)
+++|.+..+. .....+...| +.++|.+..|..|+. |.......+..+ -.|
T Consensus 313 ~~~~~l~~~~--------------~~~~~~~~~l-~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~------------~~g 365 (392)
T 3qhx_A 313 MVSVRMRAGR--------------TAAEQLCAKT-NIFILAESLGSVESLIEHPSAMTHASTAGS------------QLE 365 (392)
T ss_dssp EEEEEETTCH--------------HHHHHHHHHC-SSSEECSCCCCSSCEEECGGGTSCGGGBTT------------BCC
T ss_pred EEEEEeCCcH--------------HHHHHHHHhC-CCceECCCCCCCCceeeCcccccccccCHH------------HcC
Confidence 7888774310 1234566666 557899988888753 111100011000 134
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHHHH
Q 043646 491 VKPGWTRITFPYYMSNEEFEFILAAL 516 (625)
Q Consensus 491 ~~~g~iRis~~~~~t~edid~ll~aL 516 (625)
+.++.||||++..+++++++.+.++|
T Consensus 366 ~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 366 VPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp CCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 46799999999998888888888876
No 149
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.91 E-value=7.6e-23 Score=234.87 Aligned_cols=316 Identities=14% Similarity=0.108 Sum_probs=223.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ 200 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (625)
..+.++++.+++++|.+. .++++ +|+++++..++.++ +++||+ |+++..+|.|+..+++.
T Consensus 205 g~v~~~ee~la~l~G~d~--~i~~~-~Gtt~a~~~~i~al---------------~~~GD~--Vlv~~~~h~s~~~~~~~ 264 (755)
T 2vyc_A 205 GAFGESEKYAARVFGADR--SWSVV-VGTSGSNRTIMQAC---------------MTDNDV--VVVDRNCHKSIEQGLML 264 (755)
T ss_dssp HHHHHHHHHHHHHHTCSE--EEEES-SHHHHHHHHHHHHH---------------CCTTCE--EEEESSCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCc--eEEEC-CcHHHHHHHHHHHh---------------cCCCCE--EEECCCchHHHHHHHHH
Confidence 346778999999999862 45665 89999898888877 578986 99999999999999998
Q ss_pred cCCeEEEEecCCC-----CCC-----CHHHHHHHHHHhh-----hCCCCeEEEEecccCccccccCHHHHHHHHHHcCCE
Q 043646 201 SLAEVVEIGLDDN-----GLL-----DIEALRSQLELYK-----AAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGF 265 (625)
Q Consensus 201 ~G~~vv~v~~~~~-----~~l-----d~~~L~~~l~~~~-----~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~ 265 (625)
.|++++.++.+.+ +.+ |+++|+++|+++. ...++++++++++ |++|.+.|+++|+++||+||++
T Consensus 265 ~G~~~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~ 343 (755)
T 2vyc_A 265 TGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDR 343 (755)
T ss_dssp HCCEEEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSE
T ss_pred cCCEEEEEeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCE
Confidence 9999999987643 345 9999999997520 1123459999997 7999999999999999999999
Q ss_pred EEEeccCcCCCc--cc--cCCCCCCCC--CcE------EEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEe
Q 043646 266 ACFDFAASGPYV--KI--NLRSRNIDG--YDA------IFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNY 333 (625)
Q Consensus 266 vivD~A~~~g~~--~i--d~~~~~~~~--~D~------v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~ 333 (625)
+++|+||+.+.. +. +...+ .+ +|+ ++.|+||+++||.+.|+++++++.. .+.
T Consensus 344 livDeA~~~~~~~~~~~~~~~~~--~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~---~i~----------- 407 (755)
T 2vyc_A 344 LHFDEAWYGYARFNPIYADHYAM--RGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRG---AIN----------- 407 (755)
T ss_dssp EEEECTTCTTGGGCGGGTTSSSS--CSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBT---CCC-----------
T ss_pred EEEECcCchhcccCcccCCcchh--cCCcCCccCCCeEEEECccccccCcCCeeeeeecCccc---ccC-----------
Confidence 999999975321 11 12221 14 576 8999999999998889999987620 000
Q ss_pred eccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCc---------EE
Q 043646 334 VNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQN---------IQ 402 (625)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~g---------v~ 402 (625)
...+......+..++|++..+++ ++++++ ...|.+.+.++...+++++++.|.++++ ++
T Consensus 408 --------~~~~~~~~~~~~s~sp~~~~iaal~aA~~~l--~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~ 477 (755)
T 2vyc_A 408 --------FSRFNQAYMMHATTSPLYAICASNDVAVSMM--DGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFK 477 (755)
T ss_dssp --------HHHHHHHHHHTSCSSCCHHHHHHHHHHHHHH--STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCE
T ss_pred --------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceee
Confidence 00001112345567787766543 344443 3333456778888899999999988877 88
Q ss_pred EeCCCCC-C---------------------------------------C------cceEEEEeccC-CCCCCccccccCC
Q 043646 403 VLGNTSV-K---------------------------------------R------QAILSFLVYST-TNSSPENMKIERN 435 (625)
Q Consensus 403 v~~~~~~-~---------------------------------------~------~~i~~f~~~~~-~~~~~~~~~~~~~ 435 (625)
++++... . . ...++|.+... .++ .-..
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G------~~~~ 551 (755)
T 2vyc_A 478 PWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDG------ELEE 551 (755)
T ss_dssp ESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTS------SBCS
T ss_pred ccCchhccccccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCC------Cccc
Confidence 8876420 0 0 12344444211 000 0012
Q ss_pred CCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHH
Q 043646 436 KPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAA 515 (625)
Q Consensus 436 ~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~a 515 (625)
.++++.++.+.|.+ +||.+... ..+.+|+++++.+|++++++++++
T Consensus 552 ~g~~~~~l~~~L~~-~gI~~e~~---------------------------------~~~~v~~~~~~g~t~~~~~~l~~a 597 (755)
T 2vyc_A 552 TGVPAALVTAWLGR-HGIVPTRT---------------------------------TDFQIMFLFSMGVTRGKWGTLVNT 597 (755)
T ss_dssp SCCCHHHHHHHHHT-TTCCCSEE---------------------------------CSSEEEEECCTTCCTTTTHHHHHH
T ss_pred cCCcHHHHHHHHHH-CCCEEeec---------------------------------CCCeEEEEECCCCCHHHHHHHHHH
Confidence 35677899999955 89987521 147899999999999999999999
Q ss_pred HHHHHHhh
Q 043646 516 LEFIAAYG 523 (625)
Q Consensus 516 L~~~~~~~ 523 (625)
|+++.+..
T Consensus 598 l~~~~~~~ 605 (755)
T 2vyc_A 598 LCSFKRHY 605 (755)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99997653
No 150
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.91 E-value=1.2e-22 Score=223.85 Aligned_cols=325 Identities=14% Similarity=0.066 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHHHHHHhC-C--CCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCC--ceEEEEcCCCCc
Q 043646 118 RMTKMVHEASNYIKRCLG-G--GQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEE--RWVVFLGPYEHH 192 (625)
Q Consensus 118 ~~~~~~~~~~~~ia~~~g-~--~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd--~~~Vlv~~~~h~ 192 (625)
+..++.+++.+++++..| . +++ +|++| +|+++++..++.++ +++|| +..|+++.+.|+
T Consensus 130 G~~~lr~~ia~~~~~~~gG~~~~~~-~i~~t-~G~~~ai~~~~~~l---------------~~~gd~~~d~Vlv~~p~y~ 192 (498)
T 3ihj_A 130 GVNCIREDVAAYITRRDGGVPADPD-NIYLT-TGASDGISTILKIL---------------VSGGGKSRTGVMIPIPQYP 192 (498)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCCCGG-GEEEE-SSHHHHHHHHHHHH---------------CCCCGGGSEEEEEEESCCT
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCcc-cEEEc-CCHHHHHHHHHHHH---------------cCCCCCCCCEEEEeCCCch
Confidence 345566667777777664 4 344 89998 89999999998887 45654 235999999999
Q ss_pred hhHHHHHHcCCeEEEEecCCC--CCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEE
Q 043646 193 SNLLSWRQSLAEVVEIGLDDN--GLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFAC 267 (625)
Q Consensus 193 s~~~~~~~~G~~vv~v~~~~~--~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vi 267 (625)
++...++..|++++.++++++ +.+|+++|++++++.....++++|++++++||||.+.+ +++|+++|++||++++
T Consensus 193 ~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li 272 (498)
T 3ihj_A 193 LYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLL 272 (498)
T ss_dssp HHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred hHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEE
Confidence 999899999999999998863 47899999999985311115899999999999999976 5679999999999999
Q ss_pred EeccCcCCCcc-----ccCCCCC--C-----CCCc-EEEEcCCCCCCC-CC-CceEEEE---eccccccCCCCCcccCCc
Q 043646 268 FDFAASGPYVK-----INLRSRN--I-----DGYD-AIFLATHKFLGG-PG-TPGILLI---SKALYQLGSSPPSTCGGG 329 (625)
Q Consensus 268 vD~A~~~g~~~-----id~~~~~--~-----~~~D-~v~~S~hK~lgg-p~-g~G~l~v---~~~~~~l~~~~p~~~ggg 329 (625)
+|++++..... ..+.... . +... +++.|++|.|.| |+ .+|++++ ++++.. .+.
T Consensus 273 ~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~--~l~------- 343 (498)
T 3ihj_A 273 ADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKG--QLV------- 343 (498)
T ss_dssp EECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHH--HHH-------
T ss_pred EEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHH--HHH-------
Confidence 99998753321 1111110 0 0122 566799999943 33 3788885 444411 110
Q ss_pred eEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh----------h-cCHHHHHHHHHHHHHHHHHhhCCC
Q 043646 330 TVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE----------Y-IGYEVIKKQEDVYIESALGRILPN 398 (625)
Q Consensus 330 ~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~----------~-~g~~~i~~~~~~l~~~l~~~L~~l 398 (625)
. .... ..+++..+.. ++..++.. . ...+.+.++.++.++++.+.|.++
T Consensus 344 -----------------~-~~~~-~~~~~~~~q~--a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 402 (498)
T 3ihj_A 344 -----------------K-LLSV-RLCPPVSGQA--AMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQV 402 (498)
T ss_dssp -----------------H-HHHH-SCCCCHHHHH--HHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred -----------------H-HHhc-cCCCCHHHHH--HHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 0111 1222332221 11111100 0 012456677788899999999999
Q ss_pred CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHH-HHHhhhhcCeeeecCCCCCchhhHhhhcCChhhH
Q 043646 399 QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFV-ATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRS 477 (625)
Q Consensus 399 ~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v-~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~ 477 (625)
|++++..+ .++++.|........ .....+..+++..++ +..+++++||.+++|..|+.+.
T Consensus 403 ~g~~~~~p----~gg~~~~~~l~~p~~---~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~------------ 463 (498)
T 3ihj_A 403 PGIHCNPL----QGAMYAFPRIFIPAK---AVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQRE------------ 463 (498)
T ss_dssp TTEECCCC----CBSSEECCEECCCHH---HHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCT------------
T ss_pred CCcEecCC----CeEEEEEEeccCchh---hhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCC------------
Confidence 99988765 356666642211000 000000113344443 4445566899999998886321
Q ss_pred HHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Q 043646 478 LEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 478 ~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~ 524 (625)
.++++|+++. .++++++.++++|++++.+..
T Consensus 464 --------------~~~~~Ris~~--~~~e~l~~~i~~L~~~~~~~~ 494 (498)
T 3ihj_A 464 --------------GTYHFRMTIL--PPVEKLKTVLQKVKDFHINFL 494 (498)
T ss_dssp --------------TCCBEEEECC--SCHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCCEEEEEeC--CCHHHHHHHHHHHHHHHHHHH
Confidence 2478999995 789999999999999877643
No 151
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.91 E-value=1.9e-23 Score=222.13 Aligned_cols=351 Identities=12% Similarity=-0.006 Sum_probs=212.0
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHH-HHHhCCCCCCcEEEeCChHHHHHHHHHHHhccccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYI-KRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVP 165 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~i-a~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~ 165 (625)
-+.++.+.+++.+.+..-+-.+ .+ ....++++.+ ++++|. .. +++++++|+ +++..++.+++
T Consensus 12 ~~~~~~i~~a~~~~~~~~~~~~------~~----~~~~~l~~~~~a~~~g~-~~-~~v~~~sgt-~al~~al~~l~---- 74 (377)
T 3ju7_A 12 TVPVIEYLDELKEIDASHIYTN------YG----PINQRFEQTIMSGFFQN-RG-AVTTVANAT-LGLMAAIQLKK---- 74 (377)
T ss_dssp CCCGGGGHHHHHHHHHHTCCSS------SC----HHHHHHHHHHHHHTSTT-CS-EEEEESCHH-HHHHHHHHHHS----
T ss_pred CCCcHHHHHHHHHHHHcCCccc------CC----HHHHHHHHHHHHHHhCC-CC-eEEEeCCHH-HHHHHHHHHcC----
Confidence 3456677777777663210000 11 2356788999 999993 22 578886665 45666666653
Q ss_pred chhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCC--CeEEEEecc
Q 043646 166 SIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKR--PMLGSFSAC 242 (625)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~--~~lv~~~~~ 242 (625)
+++||+ |+++.++|.++...++..|++++.+++++ ++.+|+++|++++.. ++ |++|+ +
T Consensus 75 ----------~~~Gd~--Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~----~~~~tk~v~---~ 135 (377)
T 3ju7_A 75 ----------RKKGKY--ALMPSFTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEE----LKEEVAIVV---P 135 (377)
T ss_dssp ----------CTTCCE--EEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHH----HGGGEEEEC---C
T ss_pred ----------CCCcCE--EEECCCCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhc----CCCCceEEE---E
Confidence 578986 99999999999999999999999999984 678999999999842 24 88876 5
Q ss_pred cCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEE--EcCCCCCCCCCCceEEEEeccccccCC
Q 043646 243 SNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIF--LATHKFLGGPGTPGILLISKALYQLGS 320 (625)
Q Consensus 243 ~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~--~S~hK~lggp~g~G~l~v~~~~~~l~~ 320 (625)
+|++|...|+++|.++|+ ||+++|+|++|+.|... +.+..+....|+.+ ++.||+++++ ..|+++.++... .+.
T Consensus 136 ~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~-~~~~~g~~~~d~~~~S~~~~K~l~~g-~gG~~~~~~~~l-~~~ 211 (377)
T 3ju7_A 136 YATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMN-GGMHYGQDFSGMIIYSFHATKPFGIG-EGGLIYSKNEED-IQR 211 (377)
T ss_dssp BCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEE-TTEETTTTCSSEEEEECBTTSSSCCB-SCEEEEESCHHH-HHH
T ss_pred ECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeE-CCEeccCCCCcEEEEECCCCCcCCCC-CcEEEEECCHHH-HHH
Confidence 678999999999999999 99999999999987642 22222001235544 4578999864 347777765431 111
Q ss_pred CCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCc
Q 043646 321 SPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQN 400 (625)
Q Consensus 321 ~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~g 400 (625)
+.....+|... .+ ......+..++.++.+.+. .. .....+.+.++.+.+++++.+.|.++++
T Consensus 212 ~~~~~~~g~~~-----------~~-~~~~~g~~~~~~~~~aa~~----~~--~l~~l~~~~~~~~~~~~~~~~~L~~~~~ 273 (377)
T 3ju7_A 212 IKRMGNFGFDT-----------NR-ECTMMGFNCKMSEYAAAIG----IA--TMKKWDDKLKERTRISEWYKQLLQSNGL 273 (377)
T ss_dssp HHHHTBTTBCT-----------TS-CBCSSCCBCCCCHHHHHHH----HH--HHHTHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhcCCCC-----------CC-ceeeccccCCCCHHHHHHH----HH--HHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 11111111110 00 0001122233444433221 11 1223566677778888889998887765
Q ss_pred EEE-eCCCCCC-CcceE-EEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCC--CCCc-hhhHhhhcCCh
Q 043646 401 IQV-LGNTSVK-RQAIL-SFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGC--ACAG-PYGHTLLAFDQ 474 (625)
Q Consensus 401 v~v-~~~~~~~-~~~i~-~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~--~~~~-~~~~~~l~~~~ 474 (625)
+.+ +.+.... ....+ .+.+ ++ ..+..++.+.|.+ .||.++.+. .|.. +....+....-
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~-~~--------------~~~~~~l~~~L~~-~gI~~~~~~~~~~~~~~~~~~~~~~~~ 337 (377)
T 3ju7_A 274 MKKGWQLQKTEAVIQQFMPILC-PE--------------EVRNKQVIEDLKK-QKIEARLYFSPSCHQQVLFRNYKSTDL 337 (377)
T ss_dssp TTTTCBCCCCSCBCCSSEEEEC-CT--------------TSCHHHHHHHHHT-TTBCCBCTTSSCGGGSGGGTTSCBSCC
T ss_pred ccccccCCCCCcceEEEEEEEe-CC--------------hhhHHHHHHHHHH-CCCceecccCCccccchhhhcCCCCCC
Confidence 421 1121111 11112 2222 21 1236788999955 799998875 2221 11110000011
Q ss_pred hhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 475 TRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 475 ~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+.+.++ ..+.+|++++..+|++|+++++++|++++..
T Consensus 338 p~~~~~-----------~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 338 TRTNKI-----------AKRIVSLPLWEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp HHHHHH-----------HHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred HHHHHH-----------HhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 111111 1478999999999999999999999877643
No 152
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.91 E-value=2.2e-23 Score=224.30 Aligned_cols=343 Identities=15% Similarity=0.110 Sum_probs=205.2
Q ss_pred CcchHHHHHHHHHhhCCCC--CCCCCCcchhhHHHH-HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccc
Q 043646 87 GRSLRYIEDYIINNVLPFY--GNTHTSDSYVGQRMT-KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGIT 163 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~--~n~~~~~~~~~~~~~-~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~ 163 (625)
.+.++.|.+++.+.+...+ ++++.. +..+.... ...+.+++++++++|.+.. .+++++|+. ++..++.++
T Consensus 42 ~~~~~~v~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~v~~~~Gs~-a~~~al~~~--- 114 (425)
T 3ecd_A 42 NIVSRAVLDAQGSVLTNKYAEGYPGKR-YYGGCEFADEVEALAIERVKRLFNAGHA--NVQPHSGAQ-ANGAVMLAL--- 114 (425)
T ss_dssp CCCCHHHHHHHTSGGGSSCTTC-------------CCHHHHHHHHHHHHHHTCSEE--ECCCSSHHH-HHHHHHHHH---
T ss_pred CCCCHHHHHHHhhhhhcccccCCCcch-hcCCChHHHHHHHHHHHHHHHHhCCCCc--eeecCchHH-HHHHHHHHc---
Confidence 4458899999988774333 333321 11222221 3344456889999998643 344656665 566666655
Q ss_pred ccchhhhhhhhccCCCCceEEEEcCCCCchhH-HHHH--HcCC--eEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEE
Q 043646 164 VPSIMRDKLITSLRDEERWVVFLGPYEHHSNL-LSWR--QSLA--EVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLG 237 (625)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~--~~G~--~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv 237 (625)
+++||+ |+++.++|+++. .... ..|. .++.++.+. ++.+|+++|++++++ +++++|
T Consensus 115 ------------~~~gd~--Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~----~~~~~v 176 (425)
T 3ecd_A 115 ------------AKPGDT--VLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQ----HKPSLI 176 (425)
T ss_dssp ------------CCTTCE--EEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHH----HCCSEE
T ss_pred ------------cCCCCE--EEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhh----cCCcEE
Confidence 478885 889999998832 2222 3344 555666664 468999999999974 378999
Q ss_pred EEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccc
Q 043646 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQ 317 (625)
Q Consensus 238 ~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~ 317 (625)
++++++| |...++++|.++|++||+++|+|++|+.+....+........+|+++.|+||+|+||.| |+++.++...
T Consensus 177 ~~~~~~~--~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-g~~~~~~~~~- 252 (425)
T 3ecd_A 177 IAGFSAY--PRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPRG-GFVLTNDEEI- 252 (425)
T ss_dssp EEECSCC--CSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCCCSC-EEEEESCHHH-
T ss_pred EEccccC--CCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhcCcEEEecCCcccCCCCc-EEEEeCCHHH-
Confidence 9998777 67889999999999999999999998755432221111112479999999999988875 9998885421
Q ss_pred cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC
Q 043646 318 LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP 397 (625)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~ 397 (625)
...+.+....+ ..++++....+.++.++......+.+.+.++.+.+++++.+.|.+
T Consensus 253 ~~~~~~~~~~~------------------------~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 308 (425)
T 3ecd_A 253 AKKINSAVFPG------------------------LQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKA 308 (425)
T ss_dssp HHHHHHHHC-----------------------------CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhCcc------------------------ccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 11111111000 112344333333322322112234567888888899999999987
Q ss_pred CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhH
Q 043646 398 NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRS 477 (625)
Q Consensus 398 l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~ 477 (625)
. ++++..+. ....++.+.+.+. +.+...+.+.| +++||.++.+..++.....
T Consensus 309 ~-g~~~~~~~--~~~~~~~~~~~~~--------------~~~~~~~~~~l-~~~gi~v~~~~~p~~~~~~---------- 360 (425)
T 3ecd_A 309 G-GVDLVTGG--TDNHLLLVDLRPK--------------GLKGAQVEQAL-ERAGITCNKNGIPFDPEKP---------- 360 (425)
T ss_dssp T-TCEEGGGS--CSSSEEEEECGGG--------------TCCHHHHHHHH-HHTTEECEECCCTTCSSCT----------
T ss_pred C-CCeeccCC--CCceEEEEEeCCC--------------CCCHHHHHHHH-HHcCCEecccccCCCCCCC----------
Confidence 4 78877542 1334444444321 23466788877 4579999965432210000
Q ss_pred HHHHHHHHhCCCCCCCcEEEEecCCCC----CHHHHHHHHHHHHHHHHhh
Q 043646 478 LEIRSAIQKGYLGVKPGWTRITFPYYM----SNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 478 ~~~~~~~~~g~~g~~~g~iRis~~~~~----t~edid~ll~aL~~~~~~~ 523 (625)
..++.+|++++..+ +++|+++++++|++++.+.
T Consensus 361 -------------~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 361 -------------TITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp -------------TTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 02468999965444 5999999999999988764
No 153
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.91 E-value=4.2e-23 Score=220.66 Aligned_cols=306 Identities=15% Similarity=0.097 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH
Q 043646 119 MTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW 198 (625)
Q Consensus 119 ~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~ 198 (625)
.....+++++.+++++|.+ + .++|+ +| +++++.++. + +++||+ |+++..+|++....+
T Consensus 53 ~~~~~~~lr~~la~~~g~~-~-~i~~~-sG-t~a~~~al~-~---------------~~~gd~--Vi~~~~~y~~~~~~~ 110 (393)
T 1n8p_A 53 QNPNRENLERAVAALENAQ-Y-GLAFS-SG-SATTATILQ-S---------------LPQGSH--AVSIGDVYGGTHRYF 110 (393)
T ss_dssp CCHHHHHHHHHHHHHTTCS-E-EEEES-CH-HHHHHHHHH-T---------------SCSSCE--EEEESSCCHHHHHHH
T ss_pred CChhHHHHHHHHHHHhCCC-c-EEEEC-Ch-HHHHHHHHH-H---------------cCCCCE--EEEeCCCchHHHHHH
Confidence 3456788999999999986 2 56665 77 577888777 5 468885 888888998766544
Q ss_pred ----HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHc----CCEEEEec
Q 043646 199 ----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQY----GGFACFDF 270 (625)
Q Consensus 199 ----~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~----g~~vivD~ 270 (625)
+..|++++.++.+ | ++|+++++ +++++|++++++||||.+.|+++|+++|+++ |+++|+|+
T Consensus 111 ~~~~~~~G~~v~~v~~~-----d-~~l~~~i~-----~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~ 179 (393)
T 1n8p_A 111 TKVANAHGVETSFTNDL-----L-NDLPQLIK-----ENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDN 179 (393)
T ss_dssp HHTSTTTCSCCEEESSH-----H-HHHHHHSC-----SSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHHHHHcCcEEEEeCCC-----h-HHHHHhcc-----cCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeC
Confidence 3469999999875 6 88888886 5799999999999999999999999999999 99999999
Q ss_pred cCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCC-Cc-eEEEEe-ccccccCCCCCcccCCceEEeeccccccccccccc
Q 043646 271 AASGPYVKINLRSRNIDGYDAIFLATHKFLGGPG-TP-GILLIS-KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLED 347 (625)
Q Consensus 271 A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~-g~-G~l~v~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (625)
+++.+... ++..+ ++|++++|+||++|+++ .+ |+++++ +++. +.+.+.
T Consensus 180 a~~~~~~~-~~~~~---~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~--~~l~~~----------------------- 230 (393)
T 1n8p_A 180 TFLSPYIS-NPLNF---GADIVVHSATKYINGHSDVVLGVLATNNKPLY--ERLQFL----------------------- 230 (393)
T ss_dssp TTTHHHHC-CGGGG---TCSEEEEETTTTTTCSSCCCCEEEEESCHHHH--HHHHHH-----------------------
T ss_pred CccccccC-CHHHc---CCeEEEEECcccccCCCCceeEEEEeCCHHHH--HHHHHH-----------------------
Confidence 99876542 33333 78999999999998544 15 888885 4542 111100
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCc-EE-EeCCCC-------------CC-C
Q 043646 348 IEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQN-IQ-VLGNTS-------------VK-R 411 (625)
Q Consensus 348 ~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~g-v~-v~~~~~-------------~~-~ 411 (625)
.....++.+..... +++..+ + ......++....++.+.+.|.+.+. +. +..+.- .. .
T Consensus 231 --~~~~g~~~~~~~~~-~~~~~l--~--~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~ 303 (393)
T 1n8p_A 231 --QNAIGAIPSPFDAW-LTHRGL--K--TLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDAL 303 (393)
T ss_dssp --HHHHCCCCCHHHHH-HHHHHH--T--THHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGC
T ss_pred --HHhcCCCCCHHHHH-HHHhcc--c--hHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCC
Confidence 00111222221111 111111 1 1333344455567777888877765 54 322210 01 3
Q ss_pred -cceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---h--hhHhhhcCChhhHHHHHHHHH
Q 043646 412 -QAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---P--YGHTLLAFDQTRSLEIRSAIQ 485 (625)
Q Consensus 412 -~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~--~~~~~l~~~~~~~~~~~~~~~ 485 (625)
+++++|.+.... .....+...| +.++|.++.|.+|+. | ..|. .+..+..
T Consensus 304 ~~~i~~~~l~~~~--------------~~~~~~l~~l-~~~~~~~s~G~~~s~~~~p~~~~h~--~~~~~~~-------- 358 (393)
T 1n8p_A 304 GGGMISFRIKGGA--------------EAASKFASST-RLFTLAESLGGIESLLEVPAVMTHG--GIPKEAR-------- 358 (393)
T ss_dssp CCSEEEEEESSCH--------------HHHHHHHHHC-SSSEECSCCCCSSCEEECTTTTTSC--SSCTTTT--------
T ss_pred CccEEEEEeCCcH--------------HHHHHHHhhC-CcceECCCCCCCcceeecccccccc--ccCHHHH--------
Confidence 667887764210 0123455555 346778888877652 1 1111 0000000
Q ss_pred hCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 486 KGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 486 ~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
...|+.++.+|||++.++++++++.+.++|+++
T Consensus 359 -~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 359 -EASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp -TTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred -HhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 012344689999999999999999999999865
No 154
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.91 E-value=3.3e-23 Score=223.96 Aligned_cols=298 Identities=12% Similarity=0.074 Sum_probs=208.1
Q ss_pred HHHHHHHHHHh-----CCCCCCc---EEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH
Q 043646 124 HEASNYIKRCL-----GGGQADA---IIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL 195 (625)
Q Consensus 124 ~~~~~~ia~~~-----g~~~~~~---vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~ 195 (625)
.++++.+++++ +++++ + |++| +|+++++..++.++ +++||+ |+++.+.|+++.
T Consensus 91 ~~lr~~ia~~~~~~~~~~~~~-~~~~i~~t-~g~~~al~~~~~~l---------------~~~gd~--Vl~~~p~y~~~~ 151 (430)
T 2x5f_A 91 EELRDLWQQKMLRDNPELSID-NMSRPIVT-NALTHGLSLVGDLF---------------VNQDDT--ILLPEHNWGNYK 151 (430)
T ss_dssp HHHHHHHHHHHHHHCTTCCGG-GBCCCEEE-SHHHHHHHHHHHHH---------------CCTTCE--EEEESSCCTHHH
T ss_pred HHHHHHHHHHHhccCcccCCC-ccceEEEc-CCchHHHHHHHHHH---------------hCCCCE--EEEcCCcCccHH
Confidence 45666677766 77666 7 8998 78899999998887 478885 899999999998
Q ss_pred HHHHH-cCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHH-----cCCE
Q 043646 196 LSWRQ-SLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQ-----YGGF 265 (625)
Q Consensus 196 ~~~~~-~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~-----~g~~ 265 (625)
..++. .|++++.++++. ++.+|+++|++++++. ..+++++++++|+||||.+.| +++|+++|++ ||++
T Consensus 152 ~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~--~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~ 229 (430)
T 2x5f_A 152 LVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSY--NKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVI 229 (430)
T ss_dssp HHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHC--CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhc--CCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEE
Confidence 88888 899999999876 4578999999999831 127899999999999999988 8899999999 9999
Q ss_pred EEEeccCcCCCc------cc--cCCCCCCCCC---cEEEEcCCCCCCCCC-CceEEEE---eccccccCCCCCcccCCce
Q 043646 266 ACFDFAASGPYV------KI--NLRSRNIDGY---DAIFLATHKFLGGPG-TPGILLI---SKALYQLGSSPPSTCGGGT 330 (625)
Q Consensus 266 vivD~A~~~g~~------~i--d~~~~~~~~~---D~v~~S~hK~lggp~-g~G~l~v---~~~~~~l~~~~p~~~ggg~ 330 (625)
+|+|++++.... ++ ++... .+. ++++.|+||+||.|+ .+|++++ ++++.. .+.....
T Consensus 230 li~De~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~--~l~~~~~---- 301 (430)
T 2x5f_A 230 AVVDDAYYGLFYEDVYTQSLFTALTNL--HSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKE--VLEAKVK---- 301 (430)
T ss_dssp EEEECTTTTCBCSSSCCSCHHHHHHTT--CCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHH--HHHHHHH----
T ss_pred EEEehhcccccCCcccchHHHHHHhhc--cCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHH--HHHHHHh----
Confidence 999999875321 11 22111 134 677889999997553 3799999 776621 1110000
Q ss_pred EEeeccccccccccccchhhhhcCCChhHHHHH--HHHHH-HHHHhhcCHHHHHHHHHHHHHHHHHhhC----CCCcEEE
Q 043646 331 VNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALA-FWVKEYIGYEVIKKQEDVYIESALGRIL----PNQNIQV 403 (625)
Q Consensus 331 v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~-~~~~~~~g~~~i~~~~~~l~~~l~~~L~----~l~gv~v 403 (625)
. ..+....+++..... .+++. -.. -....+.+.++.+.+++++.+.|. ++ ++++
T Consensus 302 ----------------~-~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~ 362 (430)
T 2x5f_A 302 ----------------G-LIRSNISSGPLPTQSAVKHVLKNNKQ-FDKEIEQNIQTLKERYEVTKEVVYADQYHS-HWQA 362 (430)
T ss_dssp ----------------H-HHHTTTSSCCHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHHHHHHHHHHHTCGGGTT-TEEE
T ss_pred ----------------h-hhhcccCCCChHHHHHHHHHHccChH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-Ccee
Confidence 0 001112233333321 22332 100 001133477778888899999998 55 7887
Q ss_pred eCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHH
Q 043646 404 LGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSA 483 (625)
Q Consensus 404 ~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~ 483 (625)
..+ .++++.+...++ ++..++.+.|.+++||.+++| .
T Consensus 363 ~~~----~~g~~~~~~~~~---------------~~~~~~~~~l~~~~gi~v~~g---~--------------------- 399 (430)
T 2x5f_A 363 YDF----NSGYFMAIKVHD---------------VDPEALRKHLIDKYSIGVIAL---N--------------------- 399 (430)
T ss_dssp CCC----CBSSEEEEEESS---------------SCHHHHHHHHHHHHCEECEEC---S---------------------
T ss_pred eCC----CceEEEEeCCCC---------------CCHHHHHHHHHHhCCEEEecC---C---------------------
Confidence 655 345544443332 246678888876589999976 1
Q ss_pred HHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 484 IQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 484 ~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
++++||++++ ++++++++++++|++++.+
T Consensus 400 ---------~~~iRis~~~-~~~e~i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 400 ---------ATDIRIAFSC-VEKDDIPHVFDSIAKAIDD 428 (430)
T ss_dssp ---------SSEEEEEGGG-SCGGGHHHHHHHHHHHHHH
T ss_pred ---------CCeEEEEEec-CCHHHHHHHHHHHHHHHHh
Confidence 3789999985 5899999999999998765
No 155
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.91 E-value=3.8e-23 Score=221.29 Aligned_cols=346 Identities=12% Similarity=0.003 Sum_probs=219.0
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH--hC-CCCCCcEEEeCChHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRC--LG-GGQADAIIFCGAGTTA 151 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~--~g-~~~~~~vift~sGtta 151 (625)
+..++|+.+... +.++.+.+++.+.+...........|.. .....++++.++++ .| ++++ +|++| +|+++
T Consensus 33 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~----~~g~~~lr~~la~~l~~g~~~~~-~v~~~-~G~~~ 106 (400)
T 3asa_A 33 HTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGP----DFGLPALRQKLSEDFYRGFVDAK-EIFIS-DGAKV 106 (400)
T ss_dssp SCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCC----TTCCHHHHHHHHHTTSTTSSCGG-GEEEE-SCHHH
T ss_pred CceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCC----CCCCHHHHHHHHHHHHcCCCCHH-HEEEc-cChHH
Confidence 457888887664 5678889988877643211111111111 11245688888888 47 5555 89998 78888
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCe-EEEEecCCCCCCCHHHHHHHHHHhhh
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAE-VVEIGLDDNGLLDIEALRSQLELYKA 230 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~-vv~v~~~~~~~ld~~~L~~~l~~~~~ 230 (625)
++..++..+ .+||+ |++..+.|+++...++..|++ ++.+++++++.++.+ +++ +
T Consensus 107 al~~~~~~~----------------~~gd~--Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-l~~-~----- 161 (400)
T 3asa_A 107 DLFRLLSFF----------------GPNQT--VAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPE-FPE-D----- 161 (400)
T ss_dssp HHHHHHHHH----------------CSSCE--EEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCC-CCT-T-----
T ss_pred HHHHHHHHc----------------CCCCE--EEECCCCcHHHHHHHHHcCCcceEecccchhcCcccC-hhh-c-----
Confidence 888876543 57775 888889999988888888998 999998754322211 211 1
Q ss_pred CCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCc-CCC---ccccCCCCCC-CCCcEEEEcCCCCCCC
Q 043646 231 AKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAAS-GPY---VKINLRSRNI-DGYDAIFLATHKFLGG 302 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~-~g~---~~id~~~~~~-~~~D~v~~S~hK~lgg 302 (625)
+++++|++++++||||.+.| +++|+++|+++|+++|+|++++ +.. .+.++..+.. .+.++++.|++|+||.
T Consensus 162 -~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 240 (400)
T 3asa_A 162 -THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGF 240 (400)
T ss_dssp -CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTT
T ss_pred -cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCC
Confidence 46899999999999999987 5678899999999999999987 322 2233333210 1234888999999974
Q ss_pred CC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHH
Q 043646 303 PG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIK 381 (625)
Q Consensus 303 p~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~ 381 (625)
|+ .+|++++++++. .... ..+ .... ........++++...... +.+++ .+ ...+.+.
T Consensus 241 ~GlriG~~~~~~~~~--~~~~------~~~----------~~~~-~~~~~~~~~~~~~~~~~a-~~~~l-~~-~~~~~~~ 298 (400)
T 3asa_A 241 AGIRLGWTVIPQELT--YADG------HFV----------IQDW-ERFLSTTFNGASIPAQEA-GVAGL-SI-LPQLEAI 298 (400)
T ss_dssp TTCCCEEEECCTTCB--CTTS------CBH----------HHHH-HHHHHHHCCCCCHHHHHH-HHHHH-HH-TTTCHHH
T ss_pred cchheeEEeeChhhc--cchh------hhH----------HHHH-HHHhccCccCCChHHHHH-HHHHh-Cc-HHHHHHH
Confidence 43 479999887762 1110 000 0000 001112233444443322 22222 12 2456777
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCC
Q 043646 382 KQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCAC 461 (625)
Q Consensus 382 ~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~ 461 (625)
++.+.+++++.+.|.++ ++++..+. .+.++.+.+.+. +++..++.+.|.+++||.+++|..|
T Consensus 299 ~~~~~~~~~l~~~L~~~-g~~~~~~~---~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~gv~v~~g~~f 360 (400)
T 3asa_A 299 HYYRENSDLLRKALLAT-GFEVFGGE---HAPYLWVKPTQA--------------NISDRDLFDFFLREYHIAITPGIGF 360 (400)
T ss_dssp HHHHHHHHHHHHHHHHT-TCEEEECS---SSSEEEEECCCT--------------TCCTTTHHHHHHHHHSEECEEGGGG
T ss_pred HHHHHHHHHHHHHHHHC-CCeeeCCC---CceEEEEeccCC--------------CCCHHHHHHHHHHhCCEEEeChhHh
Confidence 88888899999999877 78877542 223333331331 1223467777766679999998877
Q ss_pred CchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 462 AGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
... .++++|||+ +++++++++++++|+++++.
T Consensus 361 ~~~---------------------------~~~~iRis~--~~~~e~i~~~l~~l~~~~~~ 392 (400)
T 3asa_A 361 GRS---------------------------GSGFVRFSS--LGKREDILAACERLQMAPAL 392 (400)
T ss_dssp CGG---------------------------GTTCEEEEC--CSCHHHHHHHHHHHHC----
T ss_pred CCC---------------------------CCCEEEEEe--eCCHHHHHHHHHHHHHHHHh
Confidence 511 147899994 57999999999999877644
No 156
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.91 E-value=6.7e-23 Score=222.20 Aligned_cols=368 Identities=10% Similarity=0.001 Sum_probs=219.3
Q ss_pred cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccch
Q 043646 88 RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSI 167 (625)
Q Consensus 88 ~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~ 167 (625)
..++.+.+++.+.+...+ +..+ ....++++.+++++|.+ +++++++|+ +++..++.++.....
T Consensus 40 ~~~~~~~~a~~~~~~~~~-------~~~~----~~~~~l~~~la~~~g~~---~~i~~~sGt-~a~~~al~~l~~~~~-- 102 (437)
T 3bb8_A 40 VIGTKELQLMVEASLDGW-------LTTG----RFNDAFEKKLGEYLGVP---YVLTTTSGS-SANLLALTALTSPKL-- 102 (437)
T ss_dssp CCCHHHHHHHHHHHHHCC-------CBSC----HHHHHHHHHHHHHHTCS---EEEEESCHH-HHHHHHHHHTTCGGG--
T ss_pred CCCHHHHHHHHHHHHcCC-------cCCC----hHHHHHHHHHHHHHCCC---cEEEeCCHH-HHHHHHHHHhhhccc--
Confidence 345678888877764211 1112 24678999999999986 467776776 667777776520000
Q ss_pred hhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcc
Q 043646 168 MRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVT 246 (625)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~T 246 (625)
.+ ..+++|++ |+++..+|+++..+++..|++++.+++++ ++.+|+++|+++++ +++++|++++ ++
T Consensus 103 ~~----~~~~~gd~--Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~-----~~~~~v~~~~---~~ 168 (437)
T 3bb8_A 103 GV----RALKPGDE--VITVAAGFPTTVNPTIQNGLIPVFVDVDIPTYNVNASLIEAAVS-----DKTKAIMIAH---TL 168 (437)
T ss_dssp GG----GSCCTTCE--EEECSSSCHHHHHHHHHTTCEEEECCEETTTTEECGGGHHHHCC-----TTEEEEEEEC---GG
T ss_pred cc----ccCCCcCE--EEECCCCcHHHHHHHHHcCCEEEEEeccCccCCcCHHHHHHhcC-----CCCeEEEEeC---CC
Confidence 00 01467775 99999999999999999999999999876 67899999999987 5789999876 56
Q ss_pred ccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC-ceEEEEeccccc-c-CCCCC
Q 043646 247 GIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT-PGILLISKALYQ-L-GSSPP 323 (625)
Q Consensus 247 G~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g-~G~l~v~~~~~~-l-~~~~p 323 (625)
|...|+++|.++|+++|+++|+|+||+.|... +.+.++. ..|++++|++|..+.|+| .|+++.+++... . ..+.+
T Consensus 169 g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~-~~~~~~~-~~d~~~~s~~~~k~l~~g~gg~~~~~~~~~~~~~~~~~~ 246 (437)
T 3bb8_A 169 GNLFDLAEVRRVADKYNLWLIEDCCDALGSTY-DGKMAGT-FGDIGTVSFYPAKHITMGEGGAVFTQSAELKSIIESFRD 246 (437)
T ss_dssp GCCCCHHHHHHHHHHHTCEEEEECTTCTTCEE-TTEETTS-SSSEEEEECSTTSSSCCSSCEEEEESCHHHHHHHHHHHB
T ss_pred CChhcHHHHHHHHHHcCCEEEEECccccCceE-CCeeccc-ccCEEEEECcCCcCCCCCCeEEEEeCCHHHHHHHHHHHH
Confidence 88899999999999999999999999988765 5544411 268888775433332333 477777755411 0 00111
Q ss_pred cccC----CceEEee-ccccc---ccc-cc---ccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 043646 324 STCG----GGTVNYV-NAFDE---KDT-LY---LEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESA 391 (625)
Q Consensus 324 ~~~g----gg~v~~~-~~~~~---~~~-~~---~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l 391 (625)
...+ ++.-... ..+.. ... .+ .......+..++.++.+.+. +..+ +. .+...++.+++++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~--l~~l--~~--~~~~~~~~~~~~~~l 320 (437)
T 3bb8_A 247 WGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACG--LAQL--ER--IEEFVEKRKANFKYL 320 (437)
T ss_dssp TTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHH--HHHH--HH--HHHHHHHHHHHHHHH
T ss_pred hCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHH--HHHH--HH--HHHHHHHHHHHHHHH
Confidence 1110 0000000 00000 000 00 00000111122334444322 2111 11 134444557789999
Q ss_pred HHhhCCCCcEEEeCCCCCCCc-c--eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC---chh
Q 043646 392 LGRILPNQNIQVLGNTSVKRQ-A--ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA---GPY 465 (625)
Q Consensus 392 ~~~L~~l~gv~v~~~~~~~~~-~--i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~---~~~ 465 (625)
.+.|.+++++.++......+. + ++.+.+... .+++..++.+.|.+ +||.++.+..+. .|.
T Consensus 321 ~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~L~~-~GI~v~~~~~~~~~~~p~ 386 (437)
T 3bb8_A 321 KDALQSCADFIELPEATENSDPSWFGFPITLKED-------------SGVSRIDLVKFLDE-AKVGTRLLFAGNLTRQPY 386 (437)
T ss_dssp HHHGGGGTTTEECCCCCTTEECCCSSEEEEECGG-------------GSSCHHHHHHHHHH-TTBCCBCCTTSSGGGSGG
T ss_pred HHHhhccCCccccCCCCCCCceeeEEEEEEECCc-------------CcCcHHHHHHHHHH-CCCceeccCCcccccCch
Confidence 999998888766542211111 2 233333211 02346789999965 799999876521 121
Q ss_pred hHh-----hhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 466 GHT-----LLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 466 ~~~-----~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
... +..++ .+.++ ..+.+||+++.++|++|+++++++|++++.
T Consensus 387 ~~~~~~~~~~~~~--~~~~~-----------~~~~lrl~~~~~~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 387 FHDVKYRVVGELT--NTDRI-----------MNQTFWIGIYPGLTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp GSSCCCEECSCCH--HHHHH-----------HHHEEEECCSTTCCHHHHHHHHHHHHHHTT
T ss_pred hhccCccccCCCc--HHHHH-----------hcCEEEecCCCCCCHHHHHHHHHHHHHHHc
Confidence 100 01111 11111 136899999999999999999999998754
No 157
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.91 E-value=1.5e-22 Score=218.24 Aligned_cols=307 Identities=12% Similarity=0.009 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH--HHHHHhcccccchhhhhhhhccC--C---------CCceEEEEcCC
Q 043646 123 VHEASNYIKRCLGGGQADAIIFCGAGTTAAIK--RLQEVMGITVPSIMRDKLITSLR--D---------EERWVVFLGPY 189 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~~~~~vift~sGttaal~--~l~~~l~~~~~~~~~~~~~~~l~--~---------gd~~~Vlv~~~ 189 (625)
..++++.++++++++++ +|++| +|+++++. .++.++ +. + || .|++..+
T Consensus 72 ~~~lr~~ia~~~~~~~~-~i~~t-~G~~~al~~~~~~~~l---------------~~~~~g~~~~~~~~gd--~Vlv~~p 132 (423)
T 3ez1_A 72 LPSARALFAGYLDVKAE-NVLVW-NNSSLELQGLVLTFAL---------------LHGVRGSTGPWLSQTP--KMIVTVP 132 (423)
T ss_dssp CHHHHHHHHHHTTSCGG-GEEEC-SSCHHHHHHHHHHHHH---------------HTCCTTCSSCGGGGCC--EEEEEES
T ss_pred hHHHHHHHHHHhCCChh-hEEEe-CCcHHHHHHHHHHHHH---------------hccCCCccccccCCCC--EEEEcCC
Confidence 45689999999999877 89998 78888887 676665 24 5 35 4999999
Q ss_pred CCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEE-ecccCccccccCHH---HHHHHH-HHcCC
Q 043646 190 EHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSF-SACSNVTGIYSDTR---SIARLL-HQYGG 264 (625)
Q Consensus 190 ~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~-~~~~n~TG~~~~l~---~I~~la-~~~g~ 264 (625)
.|+.+...++..|++++.++++.++ +|+++|++++++. +++++|++ ++++||||.+.+.+ +|+++| ++||+
T Consensus 133 ~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~---~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~ 208 (423)
T 3ez1_A 133 GYDRHFLLLQTLGFELLTVDMQSDG-PDVDAVERLAGTD---PSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDF 208 (423)
T ss_dssp CCHHHHHHHHHHTCEEEEEEEETTE-ECHHHHHHHHHSC---TTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTC
T ss_pred CcHHHHHHHHHcCCEEEeccCCCCC-CCHHHHHHHHhhC---CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCC
Confidence 9999988899999999999998765 8999999999521 57888865 58999999999877 888888 89999
Q ss_pred EEEEeccCcCCCc-------cccCCCC----CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEe
Q 043646 265 FACFDFAASGPYV-------KINLRSR----NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNY 333 (625)
Q Consensus 265 ~vivD~A~~~g~~-------~id~~~~----~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~ 333 (625)
++|+|++++.... ..++..+ +..+.++++.|++|++++..++|++++++++.. .+...
T Consensus 209 ~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~~~~--~~~~~--------- 277 (423)
T 3ez1_A 209 TIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSEDNIR--WLSKY--------- 277 (423)
T ss_dssp EEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECHHHHH--HHHHH---------
T ss_pred EEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCHHHHH--HHHHH---------
Confidence 9999999873211 1111100 112457888999998543446899999887622 11000
Q ss_pred eccccccccccccchhhhhcCCChhHHHHH-HHHHHHH---HHhh--cCHHHHHHHHHHHHHHHHHhhCCCC-cEEEeCC
Q 043646 334 VNAFDEKDTLYLEDIEERENGGTPQIVQMI-RAALAFW---VKEY--IGYEVIKKQEDVYIESALGRILPNQ-NIQVLGN 406 (625)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~-~aal~~~---~~~~--~g~~~i~~~~~~l~~~l~~~L~~l~-gv~v~~~ 406 (625)
......+.+.+.+.+ .+++.-+ +.+. .-.+.+.++...+.+.+.+.|..++ ++++..+
T Consensus 278 ---------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p 342 (423)
T 3ez1_A 278 ---------------LGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLP 342 (423)
T ss_dssp ---------------HHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCC
T ss_pred ---------------HhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCC
Confidence 011112222222221 1112110 0000 0012223334444555666666665 5777655
Q ss_pred CCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeec-CCCCCchhhHhhhcCChhhHHHHHHHHH
Q 043646 407 TSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARG-GCACAGPYGHTLLAFDQTRSLEIRSAIQ 485 (625)
Q Consensus 407 ~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~-G~~~~~~~~~~~l~~~~~~~~~~~~~~~ 485 (625)
. .+.+.+...+.. +..++.+.|. ++||.+++ |.+|... .
T Consensus 343 ~----~g~~~~~~~~~~---------------~~~~~~~~l~-~~gv~v~~~g~~~~~~--~------------------ 382 (423)
T 3ez1_A 343 K----GGYFISLDTAEP---------------VADRVVKLAE-AAGVSLTPAGATYPAG--Q------------------ 382 (423)
T ss_dssp S----BSSCEEEEESSS---------------CHHHHHHHHH-HTTEECCCTTTTSSTT--C------------------
T ss_pred C----ccEEEEEECCCC---------------cHHHHHHHHH-HCCcEEecCcccccCC--C------------------
Confidence 3 344444444321 3567777774 57999998 6555411 0
Q ss_pred hCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 486 KGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 486 ~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
...++++||+++.. ++++++.++++|++++.+.
T Consensus 383 ----~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~ 415 (423)
T 3ez1_A 383 ----DPHNRNLRLAPTRP-PVEEVRTAMQVVAACIRLA 415 (423)
T ss_dssp ----CSSSCEEEECCSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHH
Confidence 00258999999766 9999999999999988664
No 158
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.91 E-value=1.5e-22 Score=220.18 Aligned_cols=343 Identities=17% Similarity=0.170 Sum_probs=215.3
Q ss_pred CcchHHHHHHHHHhhCCCC--CCCCCCcchhhHHHHHHHHHHH-HHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccc
Q 043646 87 GRSLRYIEDYIINNVLPFY--GNTHTSDSYVGQRMTKMVHEAS-NYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGIT 163 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~--~n~~~~~~~~~~~~~~~~~~~~-~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~ 163 (625)
.+.++.|.+++.+.+...+ ++|... +..+....+..+++. +++++++|++.. .+++++|+.+ +..++.++
T Consensus 55 ~~~~~~v~~a~~~~~~~~~~~g~~~~~-~~~g~~~~~~~e~~a~~~la~~~g~~~~--~v~~~sGs~a-~~~a~~~~--- 127 (447)
T 3h7f_A 55 NFVPRAVLQAQGSVLTNKYAEGLPGRR-YYGGCEHVDVVENLARDRAKALFGAEFA--NVQPHSGAQA-NAAVLHAL--- 127 (447)
T ss_dssp CCCCHHHHHHHTSGGGGCCCCEETTEE-SSSCCHHHHHHHHHHHHHHHHHHTCSEE--ECCCSSHHHH-HHHHHHHH---
T ss_pred CCCCHHHHHHHHHHhcCCccccCCccc-ccCccHHHHHHHHHHHHHHHHHcCCCce--EEEeCCHHHH-HHHHHHHh---
Confidence 4458899999988775333 233321 222333344445455 999999998743 3325577664 55555555
Q ss_pred ccchhhhhhhhccCCCCceEEEEcCCCCchhH-HH----HHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEE
Q 043646 164 VPSIMRDKLITSLRDEERWVVFLGPYEHHSNL-LS----WRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLG 237 (625)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~----~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv 237 (625)
+++||+ |+++..+|.++. .. +...+..++.++++. ++.+|+++|++++.+ .+++++
T Consensus 128 ------------~~~Gd~--Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~----~~~~~i 189 (447)
T 3h7f_A 128 ------------MSPGER--LLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALE----FRPKVI 189 (447)
T ss_dssp ------------CCTTCE--EEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHH----HCCSEE
T ss_pred ------------cCCCCE--EEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHh----cCCeEE
Confidence 578886 888888887622 11 122345677777764 678999999999974 368899
Q ss_pred EEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccc
Q 043646 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQ 317 (625)
Q Consensus 238 ~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~ 317 (625)
+++.++|+++. ++++|.++|++||+++|+|++|+.|....+.......++|+++.|+||+|+||.| |+++.++++..
T Consensus 190 ~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~~~~di~~~s~sK~l~G~~g-G~i~~~~~~~~ 266 (447)
T 3h7f_A 190 IAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHKTLGGGRS-GLIVGKQQYAK 266 (447)
T ss_dssp EEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSGGGCCCSC-EEEEECGGGHH
T ss_pred EEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCCCCCcEEEecCCcCCCCCCe-EEEEECHHHHH
Confidence 99889998876 9999999999999999999998755322111111113679999999999998987 99998887621
Q ss_pred cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC
Q 043646 318 LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP 397 (625)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~ 397 (625)
.+.+.. .....|+++...+++++.++......+.+.+.++..++++++.+.|.+
T Consensus 267 --~l~~~~------------------------~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 320 (447)
T 3h7f_A 267 --AINSAV------------------------FPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMA 320 (447)
T ss_dssp --HHHHHH------------------------TTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred --HHhhhc------------------------CCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111100 111234444433333333332112224567788888889999999987
Q ss_pred C----CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCC
Q 043646 398 N----QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFD 473 (625)
Q Consensus 398 l----~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~ 473 (625)
. ++++++.+. .....+.+.+.+ .+++...+.+.| ++.||.++....+......
T Consensus 321 ~~~~~~g~~~~~~~--~~~~~~~~~~~~--------------~~~~~~~~~~~l-~~~GI~v~~~~i~~~~~~p------ 377 (447)
T 3h7f_A 321 PDVAKAGVSVVSGG--TDVHLVLVDLRD--------------SPLDGQAAEDLL-HEVGITVNRNAVPNDPRPP------ 377 (447)
T ss_dssp HHHHHTTCEEGGGS--CSSSEEEEECTT--------------SSCCHHHHHHHH-HHTTEECBC----------------
T ss_pred ccccCCCeEEecCC--CCCCEEEEEcCC--------------CCCCHHHHHHHH-HHCCeEEecccCCCCCCCC------
Confidence 6 578876531 122333333322 234456666666 5579999832211100000
Q ss_pred hhhHHHHHHHHHhCCCCCCCcEEEEecCCC----CCHHHHHHHHHHHHHHHHhh
Q 043646 474 QTRSLEIRSAIQKGYLGVKPGWTRITFPYY----MSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 474 ~~~~~~~~~~~~~g~~g~~~g~iRis~~~~----~t~edid~ll~aL~~~~~~~ 523 (625)
..++++||+++.. .+++|+++++++|++++...
T Consensus 378 -----------------~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~~ 414 (447)
T 3h7f_A 378 -----------------MVTSGLRIGTPALATRGFGDTEFTEVADIIATALATG 414 (447)
T ss_dssp --------------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHSG
T ss_pred -----------------CCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 0247799998644 67999999999999987653
No 159
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.90 E-value=8.9e-23 Score=220.38 Aligned_cols=304 Identities=12% Similarity=0.003 Sum_probs=199.6
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHH--HHHHHHhcccccchhhhhhhhccC--C----------CCceEEEEcC
Q 043646 123 VHEASNYIKRCLGGGQADAIIFCGAGTTAAI--KRLQEVMGITVPSIMRDKLITSLR--D----------EERWVVFLGP 188 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~~~~~vift~sGttaal--~~l~~~l~~~~~~~~~~~~~~~l~--~----------gd~~~Vlv~~ 188 (625)
..++|+.|+++++++++ +|++| +|+++++ ..++.++. . | ||+ |++..
T Consensus 80 ~~~lr~~ia~~~~~~~~-~i~~t-~G~~~al~~~~~~~~l~---------------~~~~g~~~~~~~~~gd~--V~v~~ 140 (427)
T 3ppl_A 80 IVDIRQIWADLLGVPVE-QVLAG-DASSLNIMFDVISWSYI---------------FGNNDSVQPWSKEETVK--WICPV 140 (427)
T ss_dssp CHHHHHHHHHHHTSCGG-GEEEC-SSCHHHHHHHHHHHHHH---------------HCCTTCSSCGGGSSCCE--EEEEE
T ss_pred cHHHHHHHHHHhCCCcc-eEEEe-CCcHHHHHHHHHHHHHh---------------ccCCcccccccCCCCCE--EEEcC
Confidence 45688999999999877 89998 7888888 46666652 3 4 664 99999
Q ss_pred CCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEe-cccCccccccCHH---HHHHHH-HHcC
Q 043646 189 YEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFS-ACSNVTGIYSDTR---SIARLL-HQYG 263 (625)
Q Consensus 189 ~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~-~~~n~TG~~~~l~---~I~~la-~~~g 263 (625)
+.|+++...++..|++++.+|++.++ +|+++|+++++. +++++|++. +++||||.+.|.+ +|+++| ++||
T Consensus 141 p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~----~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~ 215 (427)
T 3ppl_A 141 PGYDRHFSITERFGFEMISVPMNEDG-PDMDAVEELVKN----PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPD 215 (427)
T ss_dssp SCCHHHHHHHHHTTCEEEEEEEETTE-ECHHHHHHHTTS----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTT
T ss_pred CCcHHHHHHHHHcCCEEEEeCCCCCC-CCHHHHHHHHhc----CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCC
Confidence 99999998999999999999998776 999999999852 578888765 8899999999877 888888 9999
Q ss_pred CEEEEeccCcCCCc------cccCCCC----CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEe
Q 043646 264 GFACFDFAASGPYV------KINLRSR----NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNY 333 (625)
Q Consensus 264 ~~vivD~A~~~g~~------~id~~~~----~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~ 333 (625)
+++|+|++++.... ++++..+ +..+.++++.|++|++++..++|+++.++++.. .+..
T Consensus 216 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~--~~~~---------- 283 (427)
T 3ppl_A 216 FRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRK--WYTG---------- 283 (427)
T ss_dssp CEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHH--HHHH----------
T ss_pred CEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHHHH--HHHH----------
Confidence 99999999874211 1121110 012567889999999543346899998877621 1100
Q ss_pred eccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh----hcCHHHHHHHH----HHHHHHHHHhhCCCCcEEEeC
Q 043646 334 VNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE----YIGYEVIKKQE----DVYIESALGRILPNQNIQVLG 405 (625)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~----~~g~~~i~~~~----~~l~~~l~~~L~~l~gv~v~~ 405 (625)
.......+++.+.+.+. ..++ .. ....+...++. ..+.+.+.+.|..++++++..
T Consensus 284 --------------~~~~~~~~~~~~~q~~~--~~~l-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~ 346 (427)
T 3ppl_A 284 --------------HAGIRGIGPNKVNQLAH--ARYF-GDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTV 346 (427)
T ss_dssp --------------HHHHHCSCCCHHHHHHH--HHHH-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECC
T ss_pred --------------HhhcccCCCCHHHHHHH--HHHH-hChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeC
Confidence 01111122333332211 1111 01 00122233333 333444444444444677665
Q ss_pred CCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHH
Q 043646 406 NTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQ 485 (625)
Q Consensus 406 ~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~ 485 (625)
+. .+.+.+...+.. +..++.+.|. ++||.+++|..|-.. +.
T Consensus 347 p~----~g~~~~~~~~~~---------------~~~~~~~~l~-~~gv~v~~~g~~~~~-~~------------------ 387 (427)
T 3ppl_A 347 PA----GGYFISLDVVPG---------------TASRVAELAK-EAGIALTGAGSSYPL-RQ------------------ 387 (427)
T ss_dssp CS----BSSCEEEECSTT---------------CHHHHHHHHH-HTTEECCCTTTTSGG-GC------------------
T ss_pred CC----ccEEEEEECCcc---------------hHHHHHHHHH-HCCCEEecCcCcCCC-CC------------------
Confidence 53 355444444321 3567888775 579999985444311 00
Q ss_pred hCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 486 KGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 486 ~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
...++++|||++.. ++++++.++++|++++.+.
T Consensus 388 ----~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 388 ----DPENKNLRLAPSLP-PVEELEVAMDGVATCVLLA 420 (427)
T ss_dssp ----CTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHH
Confidence 00258999999755 8999999999999987654
No 160
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.90 E-value=3.2e-22 Score=215.84 Aligned_cols=348 Identities=11% Similarity=0.023 Sum_probs=222.1
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchh
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIM 168 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (625)
.|+.+.+++.+.+... .|.. ......++++.+++++|.+ ++++| +|+++++..++.++
T Consensus 30 ~p~~~~~a~~~~~~~~-------~y~~---~~~~~~~l~~~la~~~~~~---~v~~~-~ggt~al~~~l~~l-------- 87 (424)
T 2po3_A 30 DRARLYERLDRALDSQ-------WLSN---GGPLVREFEERVAGLAGVR---HAVAT-CNATAGLQLLAHAA-------- 87 (424)
T ss_dssp CHHHHHHHHHHHHHHT-------CCSS---SCHHHHHHHHHHHHHHTSS---EEEEE-SCHHHHHHHHHHHH--------
T ss_pred ChHHHHHHHHHHHhcC-------Cccc---CCHHHHHHHHHHHHHhCCC---eEEEe-CCHHHHHHHHHHHc--------
Confidence 4678888887776321 0111 0234677899999999973 78998 67888888888776
Q ss_pred hhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccc
Q 043646 169 RDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTG 247 (625)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG 247 (625)
.+||+ |+++.++|+++...++..|++++.+++++ ++.+|+++|+++++ +++++|++++ +||
T Consensus 88 --------~~gd~--Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~-----~~~~~v~~~~---~tG 149 (424)
T 2po3_A 88 --------GLTGE--VIMPSMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAVT-----PRTSAVVGVH---LWG 149 (424)
T ss_dssp --------TCCSE--EEEESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGCC-----TTEEEEEEEC---GGG
T ss_pred --------CCCCE--EEECCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhhC-----cCCcEEEEEC---CCC
Confidence 35664 99999999999988899999999999986 67899999999887 4789888754 899
Q ss_pred cccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCC--CCCCCCCCceEEEEe-ccccccCCCCCc
Q 043646 248 IYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATH--KFLGGPGTPGILLIS-KALYQLGSSPPS 324 (625)
Q Consensus 248 ~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~h--K~lggp~g~G~l~v~-~~~~~l~~~~p~ 324 (625)
...++++|.++|+++|+++|+|++++.|.. .+...+.. ..|++++|+| |++++ ...|+++.+ +++. +.+.+.
T Consensus 150 ~~~~l~~i~~la~~~~~~li~Dea~~~g~~-~~~~~~~~-~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l~--~~l~~~ 224 (424)
T 2po3_A 150 RPCAADQLRKVADEHGLRLYFDAAHALGCA-VDGRPAGS-LGDAEVFSFHATKAVNA-FEGGAVVTDDADLA--ARIRAL 224 (424)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEECTTCTTCE-ETTEETTS-SSSEEEEECCTTSSSCC-SSCEEEEESCHHHH--HHHHHH
T ss_pred CcCCHHHHHHHHHHcCCEEEEECccccCCe-ECCeeccc-ccCEEEEeCCCCCCccC-CCCeEEEeCCHHHH--HHHHHH
Confidence 999999999999999999999999997654 22222211 2588888887 98876 446888888 4552 122111
Q ss_pred ccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEe
Q 043646 325 TCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVL 404 (625)
Q Consensus 325 ~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~ 404 (625)
...++.. .+. .. .........++.. ++.+. ...+.+.+.++.+.+++++.+.|.++++++++
T Consensus 225 ~~~~~~~----~~~---~~-----~~g~~~~~~~~~a----a~~l~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 286 (424)
T 2po3_A 225 HNFGFDL----PGG---SP-----AGGTNAKMSEAAA----AMGLT--SLDAFPEVIDRNRRNHAAYREHLADLPGVLVA 286 (424)
T ss_dssp HBTTTTC----TTC---CT-----TCCCBCCCCHHHH----HHHHH--HHHHHHHHHHHHHHHHHHHHHHTCSCTTEEEC
T ss_pred HhcCccc----ccc---cc-----ccCcCCCcCHHHH----HHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCcccc
Confidence 1111100 000 00 0000001112211 11111 11235667788888999999999998899987
Q ss_pred CCC-CCCC-cceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCC---hhhHHH
Q 043646 405 GNT-SVKR-QAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFD---QTRSLE 479 (625)
Q Consensus 405 ~~~-~~~~-~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~---~~~~~~ 479 (625)
.+. .... ..++.+.+... ..+++..++.+.|.+ +||.+++.+.........+.+++ .+...+
T Consensus 287 ~~~~~~~~~~~~~~i~~~~~------------~~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r 353 (424)
T 2po3_A 287 DHDRHGLNNHQYVIVEIDEA------------TTGIHRDLVMEVLKA-EGVHTRAYFSPGCHELEPYRGQPHAPLPHTER 353 (424)
T ss_dssp CGGGGSCCCCCCEEEEECHH------------HHSSCHHHHHHHHHH-TTEECBCTTCSCGGGSTTTTTSCCCCCHHHHH
T ss_pred CCCCCCccccEEEEEEECCc------------cchhhHHHHHHHHHH-CCCceecccCCccccchhhhhcCCCCChhHHH
Confidence 632 1111 13444444210 001346688888854 79999873321100000000110 001111
Q ss_pred HHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 480 IRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 480 ~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
+ ....+|++++.+++++|+++++++|++++.+.
T Consensus 354 ~-----------~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~ 386 (424)
T 2po3_A 354 L-----------AARVLSLPTGTAIGDDDIRRVADLLRLCATRG 386 (424)
T ss_dssp H-----------HTTEEEECCSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred H-----------hcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 0 12458898889999999999999999987654
No 161
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.90 E-value=5.3e-22 Score=211.87 Aligned_cols=162 Identities=19% Similarity=0.202 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH
Q 043646 119 MTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW 198 (625)
Q Consensus 119 ~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~ 198 (625)
......++++++++++|.+ .++++++|+ +++..++.++ +++||+ |+++...|+++...+
T Consensus 57 ~~~~~~~l~~~la~~~g~~---~~i~~~sG~-~ai~~~~~~~---------------~~~gd~--vl~~~~~y~~~~~~~ 115 (389)
T 3acz_A 57 GNPTVEQFEEMVCSIEGAA---GSAAFGSGM-GAISSSTLAF---------------LQKGDH--LIAGDTLYGCTVSLF 115 (389)
T ss_dssp CCHHHHHHHHHHHHHHTCS---EEEEESSHH-HHHHHHHTTT---------------CCTTCE--EEEESSCCHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCC---eEEEeCCHH-HHHHHHHHHH---------------hCCCCE--EEEeCCCchHHHHHH
Confidence 3456788999999999986 344444776 7777776654 467885 899999999887664
Q ss_pred ----HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcC
Q 043646 199 ----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASG 274 (625)
Q Consensus 199 ----~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~ 274 (625)
+..|++++.++.. |+++|+++++ +++++|++++++||||.+.|+++|+++|+++|+++|+|++++.
T Consensus 116 ~~~~~~~g~~~~~v~~~-----d~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~ 185 (389)
T 3acz_A 116 THWLPRFGIEVDLIDTS-----DVEKVKAAWK-----PNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTS 185 (389)
T ss_dssp HHHHHHTTCEEEEECTT-----CHHHHHHTCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTC
T ss_pred HHHHHHcCCEEEEECCC-----CHHHHHHhcC-----CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcc
Confidence 5579999999863 8999999887 5789999999999999999999999999999999999999987
Q ss_pred CCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEec-cc
Q 043646 275 PYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISK-AL 315 (625)
Q Consensus 275 g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~-~~ 315 (625)
+.....+. + ++|+++.|+||++++|++ .|++++++ ++
T Consensus 186 ~~~~~~~~-~---~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~ 225 (389)
T 3acz_A 186 PCFLKPLE-L---GADIALHSVSKYINGHGDVIGGVSSAKTAED 225 (389)
T ss_dssp TTTCCGGG-T---TCSEEEEETTTTTTCSSCCCCEEEEESSHHH
T ss_pred ccccCccc-c---CCeEEEECChhhccCCCCceeEEEEECcHHH
Confidence 76322221 2 789999999999999877 59999988 66
No 162
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.90 E-value=6.5e-23 Score=214.06 Aligned_cols=308 Identities=14% Similarity=0.019 Sum_probs=210.9
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC---CCCCCcEEEeCChHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG---GGQADAIIFCGAGTTAA 152 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g---~~~~~~vift~sGttaa 152 (625)
..+||+++... +.++.+.+++.+.+... ... .| .. ....++++.++++++ ++++ +|++| +|++++
T Consensus 20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~---~~~-~y--~~---~~~~~lr~~la~~~~~~~~~~~-~v~~~-~G~~~a 88 (335)
T 1uu1_A 20 DKTYLALNENPFPFPEDLVDEVFRRLNSD---ALR-IY--YD---SPDEELIEKILSYLDTDFLSKN-NVSVG-NGADEI 88 (335)
T ss_dssp CSEEESSCCCSSCCCHHHHHHHHHTCCGG---GGG-SC--CC---SSCHHHHHHHHHHHTCSSCCGG-GEEEE-SSHHHH
T ss_pred cceECCCCCCCCCCCHHHHHHHHHHhhhh---hhh-cC--CC---CchHHHHHHHHHHcCCCCCCHH-HEEEc-CChHHH
Confidence 57999988874 56889999998876321 000 11 11 025678999999999 6665 89998 788888
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~ 232 (625)
+..++.+ + || .|+++ +.|+++...++..|++++.++.++++.+|+++| +
T Consensus 89 l~~~~~~----------------~--gd--~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l----------~ 137 (335)
T 1uu1_A 89 IYVMMLM----------------F--DR--SVFFP-PTYSCYRIFAKAVGAKFLEVPLTKDLRIPEVNV----------G 137 (335)
T ss_dssp HHHHHHH----------------S--SE--EEECS-SSCHHHHHHHHHHTCEEEECCCCTTSCCCCCCC----------C
T ss_pred HHHHHHH----------------h--CC--cEEEC-CCcHHHHHHHHHcCCeEEEeccCCCCCCCHHHc----------C
Confidence 9888764 3 45 48888 999999888888999999999877667787766 2
Q ss_pred CCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCc--cccCCCCCCCCCcEEEEcCCCCCCCCC-CceEE
Q 043646 233 RPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV--KINLRSRNIDGYDAIFLATHKFLGGPG-TPGIL 309 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~--~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l 309 (625)
++++|++++|+||||.+.|.++|.++++..| ++|+|++++.... .++. ....+.++++.|++|++|.|+ .+|++
T Consensus 138 ~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~--~~~~~~~i~~~s~sK~~g~~G~r~G~~ 214 (335)
T 1uu1_A 138 EGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGESYVDF--LKKYENLAVIRTFSKAFSLAAQRVGYV 214 (335)
T ss_dssp TTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGG--GGTCSSEEEEEESTTTTTCGGGCCEEE
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHH--hhhCCCEEEEecchhhcCCcccCeEEE
Confidence 6899999999999999999999999999989 9999999873111 1221 111255788999999997443 37999
Q ss_pred EEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 043646 310 LISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIE 389 (625)
Q Consensus 310 ~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~ 389 (625)
++++++.. .+.+. ....+++...... +.+++ ......+.+.++.+++++
T Consensus 215 ~~~~~~~~--~l~~~---------------------------~~~~~~~~~~~~~-~~~~l-~~~~~~~~~~~~~~~~~~ 263 (335)
T 1uu1_A 215 VASEKFID--AYNRV---------------------------RLPFNVSYVSQMF-AKVAL-DHREIFEERTKFIVEERE 263 (335)
T ss_dssp EECHHHHH--HHHHH---------------------------SCTTCSCHHHHHH-HHHHH-HTHHHHHHHHHHHHHHHH
T ss_pred EeCHHHHH--HHHHh---------------------------cCCCCcCHHHHHH-HHHHh-CCHHHHHHHHHHHHHHHH
Confidence 99877621 11100 0011333333221 12222 122235567777888888
Q ss_pred HHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhh
Q 043646 390 SALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTL 469 (625)
Q Consensus 390 ~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~ 469 (625)
++.+.|.++ ++++..+ .+.++.+. .+. .+..++.+.|.+ +||.++++
T Consensus 264 ~l~~~L~~~-g~~~~~~----~~~~~~~~-~~~---------------~~~~~~~~~l~~-~gi~v~~~----------- 310 (335)
T 1uu1_A 264 RMKSALREM-GYRITDS----RGNFVFVF-MEK---------------EEKERLLEHLRT-KNVAVRSF----------- 310 (335)
T ss_dssp HHHHHHHHH-TCCBCCC----CSSEEEEE-CCT---------------HHHHHHHHHHHH-HTEEEEEE-----------
T ss_pred HHHHHHHHC-CcEEcCC----CCeEEEEE-CCC---------------CCHHHHHHHHHH-CCEEEEEC-----------
Confidence 999888776 5654322 23443332 221 124578888865 79999851
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 470 LAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 470 l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
++++|||++ +++|+++++++|+++
T Consensus 311 -----------------------~~~iRis~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 311 -----------------------REGVRITIG---KREENDMILRELEVF 334 (335)
T ss_dssp -----------------------TTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred -----------------------CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 378999996 578999999998753
No 163
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.90 E-value=6.8e-23 Score=223.37 Aligned_cols=307 Identities=12% Similarity=0.136 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH--
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW-- 198 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~-- 198 (625)
...+++++++++++|.+ +++++++|++ ++..++. + +++||+ |+++.+.|+++...+
T Consensus 133 ~~~~~l~~~la~~~g~~---~~i~~~sGt~-al~~~l~-~---------------~~~Gd~--Vi~~~~~y~~~~~~~~~ 190 (464)
T 1ibj_A 133 PTRDALESLLAKLDKAD---RAFCFTSGMA-ALSAVTH-L---------------IKNGEE--IVAGDDVYGGSDRLLSQ 190 (464)
T ss_dssp HHHHHHHHHHHHHHTCS---EEEEESSHHH-HHHHHHT-T---------------SCTTCE--EEEESSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC---eEEEECCHHH-HHHHHHH-H---------------hCCCCE--EEEECCCchhHHHHHHH
Confidence 36788999999999974 4566657755 6766553 2 578885 888999999887654
Q ss_pred --HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCC
Q 043646 199 --RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (625)
Q Consensus 199 --~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~ 276 (625)
+..|++++.++.+ |+++|+++++ +++++|++++++||||.+.|+++|+++|++||+++|+|++++.|.
T Consensus 191 ~~~~~G~~v~~v~~~-----d~~~l~~~i~-----~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~ 260 (464)
T 1ibj_A 191 VVPRSGVVVKRVNTT-----KLDEVAAAIG-----PQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPV 260 (464)
T ss_dssp TSGGGTCEEEEECTT-----SHHHHHHHCC-----SSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTT
T ss_pred HHHHcCCEEEEeCCC-----CHHHHHHHhc-----cCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccc
Confidence 3469999999875 8999999987 589999999999999999999999999999999999999998775
Q ss_pred ccccCCCCCCCCCcEEEEcCCCCCCCCCCc--eEEEEec-cccccCCCCCcccCCceEEeeccccccccccccchhhhhc
Q 043646 277 VKINLRSRNIDGYDAIFLATHKFLGGPGTP--GILLISK-ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN 353 (625)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g~--G~l~v~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~ 353 (625)
....+. + +.|+++.|+||++++|.|+ |++++++ ++. +.+.+.. ...
T Consensus 261 ~~~~~~-~---~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~--~~l~~~~-------------------------~~~ 309 (464)
T 1ibj_A 261 LSRPLE-L---GADIVMHSATKFIAGHSDVMAGVLAVKGEKLA--KEVYFLQ-------------------------NSE 309 (464)
T ss_dssp TCCGGG-T---TCSEEEEETTTTTTCSSCCCCEEEEECSHHHH--HHHHHHH-------------------------HHT
T ss_pred cCChhh-c---CCEEEEECCcccccCCCCCcEEEEEEChHHHH--HHHHHHH-------------------------Hhc
Confidence 421222 2 7899999999999988765 9999986 442 1111100 001
Q ss_pred CCCh-hHHHHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHH----------HhhCCCCcEEEeCCCCCCCcceEEEEecc
Q 043646 354 GGTP-QIVQMI-RAALAFWVKEYIGYEVIKKQEDVYIESAL----------GRILPNQNIQVLGNTSVKRQAILSFLVYS 421 (625)
Q Consensus 354 ~gt~-~~~~~~-~aal~~~~~~~~g~~~i~~~~~~l~~~l~----------~~L~~l~gv~v~~~~~~~~~~i~~f~~~~ 421 (625)
.++. ++.+.+ .+++.-. ...++...+....+.+++. +.|.++|++++..+.....+++++|.+ .
T Consensus 310 g~~~~~~~~~a~~~al~~~---~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l-~ 385 (464)
T 1ibj_A 310 GSGLAPFDCWLCLRGIKTM---ALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFIT-G 385 (464)
T ss_dssp TCBCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEEC-S
T ss_pred CCCCCHHHHHHHHhchhhH---HHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEE-C
Confidence 1122 222211 1111110 0011222222233334443 345555667666654333567888876 2
Q ss_pred CCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCC----CCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEE
Q 043646 422 TTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGC----ACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTR 497 (625)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~----~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iR 497 (625)
+. + ....+.+.| ..+||.++.|. .|. |.......+.... ....|+.++++|
T Consensus 386 ~~--~------------~~~~~~~~L-~~~gi~v~~G~~~sl~~~-p~~~~~~~~~~~~---------~~~~g~~~~~iR 440 (464)
T 1ibj_A 386 SV--A------------LSKHLVETT-KYFSIAVSFGSVKSLISM-PCFMSHASIPAEV---------REARGLTEDLVR 440 (464)
T ss_dssp CH--H------------HHHHHHHHC-SSSEECSCCCSSSCEEEC-TTTTTTCSCCSSS---------SSSSSCCTTCEE
T ss_pred CH--H------------HHHHHHHhc-CcceEeecCCCCceeeec-ccccccccCCHHH---------HHhcCCCcCeEE
Confidence 11 0 023466666 34799999886 232 1100000000000 001233468999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 498 ITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 498 is~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
||++. +|++.+++.|+++++..
T Consensus 441 lsvg~----edi~~li~~L~~al~~~ 462 (464)
T 1ibj_A 441 ISAGI----EDVDDLISDLDIAFKTF 462 (464)
T ss_dssp EECCS----SCHHHHHHHHHHHHHSC
T ss_pred EEeCC----CCHHHHHHHHHHHHhhc
Confidence 99995 89999999999987653
No 164
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.90 E-value=4.6e-23 Score=221.44 Aligned_cols=309 Identities=14% Similarity=0.081 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCC---ceEEEEc-CCCCch
Q 043646 120 TKMVHEASNYIKRCLG--GGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEE---RWVVFLG-PYEHHS 193 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g--~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd---~~~Vlv~-~~~h~s 193 (625)
.++.+.+.+++.+.+| ++++ +|++| +|+++++..++.++ +++|| +..|+++ .++|+.
T Consensus 78 ~~lr~~ia~~~~~~~g~~~~~~-~i~~t-~G~t~al~~~~~~l---------------~~~gd~~~~~~vi~~~~p~~~~ 140 (417)
T 3g7q_A 78 TALLNALAVLLRETLGWDIEPQ-NIALT-NGSQSAFFYLFNLF---------------AGRRADGSTKKVLFPLAPEYIG 140 (417)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGG-GEEEE-SCHHHHHHHHHHHH---------------SBC----CCBEEEESSCCCHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCcc-cEEEe-CCcHHHHHHHHHHH---------------cCCCccCCcceEEEeCCCcccc
Confidence 3444444444444444 4444 89998 78999999998887 35654 1247876 788887
Q ss_pred hHHHHHH------cCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcC
Q 043646 194 NLLSWRQ------SLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYG 263 (625)
Q Consensus 194 ~~~~~~~------~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g 263 (625)
+...+.. .+..+..++.+. +..+|+++|+ ++ +++++|++++++||||.+.| +++|+++|++||
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~-----~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~ 213 (417)
T 3g7q_A 141 YADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--IG-----EETGMICVSRPTNPTGNVITDEELMKLDRLANQHN 213 (417)
T ss_dssp HHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--CC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred chhhccchhhhccccCcccccCCcccccccCHHHhc--cc-----cCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcC
Confidence 7654432 133444454332 3457888887 44 57999999999999999988 888999999999
Q ss_pred CEEEEeccCcCCCccccCCCC--CCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeecccccc
Q 043646 264 GFACFDFAASGPYVKINLRSR--NIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEK 340 (625)
Q Consensus 264 ~~vivD~A~~~g~~~id~~~~--~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~ 340 (625)
+++|+|++++.+......... ...+.++++.|++|+ ++|+ ++|+++.++++.. .+..
T Consensus 214 ~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~--~~~~----------------- 273 (417)
T 3g7q_A 214 IPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSKL-GLPGSRCGIIIANDKTIT--AIAN----------------- 273 (417)
T ss_dssp CCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGGG-TCTTSCCEEEECCHHHHH--HHHH-----------------
T ss_pred CEEEEeCCCccccccccccccccCCCCCEEEEEechhc-cCCCcceEEEEeCHHHHH--HHHH-----------------
Confidence 999999998753322211111 112567889999996 4443 5899888877621 1100
Q ss_pred ccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHH-----HHHHHHHHHHHHHHHhhCC-CC--cEEEeCCCCCCCc
Q 043646 341 DTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYE-----VIKKQEDVYIESALGRILP-NQ--NIQVLGNTSVKRQ 412 (625)
Q Consensus 341 ~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~-----~i~~~~~~l~~~l~~~L~~-l~--gv~v~~~~~~~~~ 412 (625)
.......+++.+.+.+ +..++ +..... .+.++.+++++++.+.|.+ ++ ++++..+. .
T Consensus 274 -------~~~~~~~~~~~~~~~~--~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~ 338 (417)
T 3g7q_A 274 -------MNGIISLAPGGMGPAM--MCEMI--KRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPE----G 338 (417)
T ss_dssp -------HHHHHCCCCCSHHHHH--HHHHH--HTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCC----B
T ss_pred -------hhcceeeCCCcHHHHH--HHHHH--cCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCC----c
Confidence 0111122223333221 12222 112211 1344445555555555544 34 46776553 3
Q ss_pred ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCC
Q 043646 413 AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVK 492 (625)
Q Consensus 413 ~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~ 492 (625)
+.+.+...+. .+++..++.+.|. ++||.+++|..|....... .+ ..
T Consensus 339 g~~~~~~~~~-------------~~~~~~~l~~~l~-~~gi~v~~g~~f~~~~~~~-~~-------------------~~ 384 (417)
T 3g7q_A 339 AIFLWLWFKD-------------LPITTELLYQRLK-ARGVLMVPGHYFFPGLDKP-WP-------------------HT 384 (417)
T ss_dssp SSEEEEECTT-------------CSSCHHHHHHHHH-HTTEECEEGGGGCTTBSSC-CG-------------------GG
T ss_pred ceEEEEEcCC-------------CCCCHHHHHHHHH-HCCEEEECchhhCCCCccc-cc-------------------cC
Confidence 4455444432 1245778888884 5799999998775221000 00 01
Q ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 493 PGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 493 ~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
++++|||++. +++++++++++|++++.+.
T Consensus 385 ~~~iRis~~~--~~~~i~~~~~~l~~~l~~~ 413 (417)
T 3g7q_A 385 HQCMRMNYVP--EPDKIEAGVKILAEEIERA 413 (417)
T ss_dssp GGEEEEESCS--CHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecC--CHHHHHHHHHHHHHHHHHH
Confidence 4799999985 9999999999999988764
No 165
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.90 E-value=5.2e-22 Score=213.60 Aligned_cols=337 Identities=10% Similarity=-0.021 Sum_probs=211.1
Q ss_pred eccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHH
Q 043646 80 YADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEV 159 (625)
Q Consensus 80 Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~ 159 (625)
|+|.....+.++.+.+++.+.... ....|....+..++.+.+.+++.+..+.+..++|++| +|+++++..++.+
T Consensus 48 ~~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t-~g~~~al~~~~~~ 121 (418)
T 3rq1_A 48 IHDEEGNLVFLKTVKEEYLSLSDS-----EHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIAT-AGGTGGIHHLIHN 121 (418)
T ss_dssp CBCTTSCBCCCHHHHHHHHTCCHH-----HHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEE-SHHHHHHHHHHHH
T ss_pred ccCCCCCccccHHHHHHHHHhccc-----ccCCCCCCCChHHHHHHHHHHHhcccCccccccEEEC-CchHHHHHHHHHH
Confidence 455556677888888887653311 0001111111234444444444444443322278898 7899999998887
Q ss_pred hcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecC-CCCCCCHHHHHHHHHHhhhCCCCe-EE
Q 043646 160 MGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLD-DNGLLDIEALRSQLELYKAAKRPM-LG 237 (625)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~-~~~~ld~~~L~~~l~~~~~~~~~~-lv 237 (625)
+ +++||+ |+++.+.|+.+...++..|++++.++++ +++.+|+++|++++++... ++++ ++
T Consensus 122 l---------------~~~gd~--Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~-~~~~~~v 183 (418)
T 3rq1_A 122 Y---------------TEPGDE--VLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAA-KQTNVVV 183 (418)
T ss_dssp H---------------SCTTCE--EEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHH-HCSEEEE
T ss_pred h---------------cCCCCE--EEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhc-cCCCEEE
Confidence 7 578886 9999999999988889999999999985 4568999999999974111 1455 88
Q ss_pred EEecc-cCccccccCHHHH---HHHHH------HcCCEEEEeccCcCCC-cc---ccC-CCCCCCCCc---EEEEcCCCC
Q 043646 238 SFSAC-SNVTGIYSDTRSI---ARLLH------QYGGFACFDFAASGPY-VK---INL-RSRNIDGYD---AIFLATHKF 299 (625)
Q Consensus 238 ~~~~~-~n~TG~~~~l~~I---~~la~------~~g~~vivD~A~~~g~-~~---id~-~~~~~~~~D---~v~~S~hK~ 299 (625)
++++| +||||.+.|.+++ +++|+ +||+++|+|+++.... .. ..+ ........| +++.|++|.
T Consensus 184 i~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~ 263 (418)
T 3rq1_A 184 IFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKG 263 (418)
T ss_dssp EEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTT
T ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCC
Confidence 89999 9999999886655 55555 8999999999974211 11 011 110000223 677899999
Q ss_pred CCCCC-CceEEEE---eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhh-
Q 043646 300 LGGPG-TPGILLI---SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEY- 374 (625)
Q Consensus 300 lggp~-g~G~l~v---~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~- 374 (625)
+|.|+ .+|++++ ++++.. .+.... .. ..+....+++..+.. ++..++ .+.
T Consensus 264 ~~~~G~r~G~~~~~~~~~~~~~--~~~~~~--------------------~~-~~~~~~~~~~~~~~~-a~~~~l-~~~~ 318 (418)
T 3rq1_A 264 FTMYGQRVGAMIGISDDEEIAD--EFFEVN--------------------KS-TSRATWSNICRPAMR-TMANIV-ADPA 318 (418)
T ss_dssp TTCCSSCCEEEEEEESSHHHHH--HHHHHH--------------------HH-HHHHHTSSCCHHHHH-HHHHHH-TCHH
T ss_pred CcCcCCcceEEEEEeCCHHHHH--HHHHHH--------------------HH-HHhhccCCCchHHHH-HHHHHh-CCHH
Confidence 97554 4799988 666521 110000 00 000011223333321 111221 110
Q ss_pred ------cCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhh
Q 043646 375 ------IGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFN 448 (625)
Q Consensus 375 ------~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~ 448 (625)
...+.++++.+++++++.+.|.++ +++++.+ ..+.+.|.... +..++++.|
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~----~~~~~~~~~~~-----------------~~~~~~~~l- 375 (418)
T 3rq1_A 319 KFKEYEAERNCYYQLIRDRADIFKQEAAQV-GLPMLPY----RGGFFITIPTD-----------------SANAICEEL- 375 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCC----CSSSEEEEECT-----------------THHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCC----CceEEEEcCCC-----------------CHHHHHHHH-
Confidence 012345566777788888888776 6666544 34555443322 256788877
Q ss_pred hhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 449 DLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 449 ~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.++||.+++| ++++|||++ ..+++++++++++|++++++.
T Consensus 376 ~~~gi~v~~g----------------------------------~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 376 KKEHIYVIAL----------------------------------ANGIRIAAC-GIPKCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp HHTTEECEEC----------------------------------SSEEEEEGG-GSCHHHHTTHHHHHHHHHHHT
T ss_pred HhCCEEEecC----------------------------------CCCeEEEEe-cCCHHHHHHHHHHHHHHHHHH
Confidence 4589999865 277999987 569999999999999988764
No 166
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.90 E-value=1.5e-21 Score=209.78 Aligned_cols=314 Identities=16% Similarity=0.142 Sum_probs=203.5
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH
Q 043646 116 GQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL 195 (625)
Q Consensus 116 ~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~ 195 (625)
++......+++++++++++|.+ .++++++| ++++..++.++ +++||+ |+++...|+++.
T Consensus 76 ~r~~~p~~~~l~~~la~~~g~~---~~~~~~sG-~~Ai~~al~~l---------------~~~Gd~--Vi~~~~~y~~~~ 134 (414)
T 3ndn_A 76 SRYGNPTVSVFEERLRLIEGAP---AAFATASG-MAAVFTSLGAL---------------LGAGDR--LVAARSLFGSCF 134 (414)
T ss_dssp TTTCCHHHHHHHHHHHHHHTCS---EEEEESSH-HHHHHHHHHTT---------------CCTTCE--EEEESCCCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHCCC---cEEEECCH-HHHHHHHHHHH---------------hCCCCE--EEEcCCccchHH
Confidence 3334456788999999999963 56777566 55577766655 578885 899999999887
Q ss_pred HHHHH----cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEecc
Q 043646 196 LSWRQ----SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFA 271 (625)
Q Consensus 196 ~~~~~----~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A 271 (625)
..++. .|++++.++.+ |+++|+++++ +++++|++++++||||.+.|+++|+++|+++|+++|+|++
T Consensus 135 ~~~~~~~~~~g~~~~~v~~~-----d~~~l~~ai~-----~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~ 204 (414)
T 3ndn_A 135 VVCSEILPRWGVQTVFVDGD-----DLSQWERALS-----VPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNV 204 (414)
T ss_dssp HHHHTHHHHTTCEEEEECTT-----CHHHHHHHTS-----SCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECT
T ss_pred HHHHHHHHHcCcEEEEeCCC-----CHHHHHHhcC-----CCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECC
Confidence 66644 79999999876 8999999987 5899999999999999999999999999999999999999
Q ss_pred CcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchh
Q 043646 272 ASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIE 349 (625)
Q Consensus 272 ~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~ 349 (625)
++.++....+ .. ++|+++.|++|++++++. .|+++++++... ..+...
T Consensus 205 ~~~~~~~~~~-~~---g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~-~~l~~~------------------------- 254 (414)
T 3ndn_A 205 FATPLLQQGF-PL---GVDVVVYSGTKHIDGQGRVLGGAILGDREYID-GPVQKL------------------------- 254 (414)
T ss_dssp TTHHHHCCCG-GG---TCSEEEEETTTTTTCSSCCCCEEEEECHHHHT-THHHHH-------------------------
T ss_pred CcccccCCch-hc---CCCeEeccCCccccCCCCceEEEEEECHHHHH-HHHHHH-------------------------
Confidence 8866433333 22 789999999999986553 689888877621 011000
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC-------------CCCcceE
Q 043646 350 ERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS-------------VKRQAIL 415 (625)
Q Consensus 350 ~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~-------------~~~~~i~ 415 (625)
.+...++.+.... ..++. .....+...++..+.++++.+.|.+.|.+. +..|.- ...++++
T Consensus 255 ~~~~g~~~~~~~a-~~~~~----~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l 329 (414)
T 3ndn_A 255 MRHTGPAMSAFNA-WVLLK----GLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVV 329 (414)
T ss_dssp HHHHCCCCCHHHH-HHHHH----HGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEE
T ss_pred HHHcCCCCCHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEE
Confidence 0111122222211 11111 112234445566677888889998888875 333321 1135677
Q ss_pred EEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCCCCCC
Q 043646 416 SFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGYLGVK 492 (625)
Q Consensus 416 ~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~g~~ 492 (625)
+|.+..... ........+.+.| +.+++.+..|..|+. |.......+..+.-.+ .|+.
T Consensus 330 ~~~l~~~~~----------~~~~~~~~~~~~l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~---------~g~~ 389 (414)
T 3ndn_A 330 TFALDCPED----------VAKQRAFEVLDKM-RLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAA---------IGLG 389 (414)
T ss_dssp EEEECSCGG----------GHHHHHHHHHHHC-SSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHH---------TTCC
T ss_pred EEEEcCCcc----------ccHHHHHHHHHhC-ccceEcCCCCCCCceeeCccccccccCCHHHHHh---------cCCC
Confidence 777743100 0000134566767 457888888876653 2222111221111111 3566
Q ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 493 PGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 493 ~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
+++||||++. |+++.+++.|++.
T Consensus 390 ~~~iRlsvG~----e~~~dli~dl~~a 412 (414)
T 3ndn_A 390 DGVVRISVGL----EDTDDLIADIDRA 412 (414)
T ss_dssp TTEEEEECCS----SCHHHHHHHHHHH
T ss_pred CCeEEEEeCc----CCHHHHHHHHHHh
Confidence 8999999986 4455555555544
No 167
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.90 E-value=1.3e-21 Score=211.50 Aligned_cols=339 Identities=12% Similarity=0.005 Sum_probs=209.9
Q ss_pred eEeccCCCCC------cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTASG------RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~~------~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
..|+|+.++. ..++.|.+++.+.+.....++.. .+ ......+++++++++++.+.+ +|+|| +|+++
T Consensus 43 ~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~-~~-----~~~~~~~l~~~la~~~~~~~~-~v~~~-~ggte 114 (429)
T 1s0a_A 43 RRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFG-GI-----THAPAIELCRKLVAMTPQPLE-CVFLA-DSGSV 114 (429)
T ss_dssp CEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCS-SE-----ECHHHHHHHHHHHHHSCTTCC-EEEEE-SSHHH
T ss_pred CEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccccc-cc-----CCHHHHHHHHHHHHhCCCCCC-EEEEe-CCHHH
Confidence 4688875543 35789999999888543222211 11 123356778889999997666 89999 56666
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcC-CCCchhHHHHHHcC-------------CeEEEEecCC-----
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGP-YEHHSNLLSWRQSL-------------AEVVEIGLDD----- 212 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~-~~h~s~~~~~~~~G-------------~~vv~v~~~~----- 212 (625)
++..++.++.... +. .-+|+++ |++.. .+|.+........| ..++.++.+.
T Consensus 115 a~~~ai~~~~~~~----~~----~g~~~~~--vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (429)
T 1s0a_A 115 AVEVAMKMALQYW----QA----KGEARQR--FLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDG 184 (429)
T ss_dssp HHHHHHHHHHHHH----HH----HTCCCCE--EEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-C
T ss_pred HHHHHHHHHHHHh----cc----cCCCCCe--EEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccc
Confidence 6776665431000 00 0024665 55555 45554443332222 1355666542
Q ss_pred -CCCCCHHHHHHHHHHhhhCCCCeEEEEecc-cCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCccc--cCCC
Q 043646 213 -NGLLDIEALRSQLELYKAAKRPMLGSFSAC-SNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVKI--NLRS 283 (625)
Q Consensus 213 -~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~-~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~i--d~~~ 283 (625)
.+.+|+++|++++++. .+++++|+++.+ +|+||.+.| +++|.++|++||+++|+|++|+ ++.... .+..
T Consensus 185 ~~~~~d~~~l~~~l~~~--~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~ 262 (429)
T 1s0a_A 185 EWDERDMVGFARLMAAH--RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEH 262 (429)
T ss_dssp CCCGGGGHHHHHHHHHH--TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGG
T ss_pred cchHHHHHHHHHHHHhC--CCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhh
Confidence 2358999999999742 236778888777 899998877 9999999999999999999987 433211 1111
Q ss_pred CCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhh-cCCC--hhH
Q 043646 284 RNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE-NGGT--PQI 359 (625)
Q Consensus 284 ~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~-~~gt--~~~ 359 (625)
.+ ..+|++++| |+|+++ .++|++++++++. +.+.+ ++. ..+ ..+| .+.
T Consensus 263 ~~-~~~d~~t~s--K~l~~G~~~iG~~~~~~~~~--~~l~~---~~~--------------------~~~~~~~t~~~n~ 314 (429)
T 1s0a_A 263 AE-IAPDILCLG--KALTGGTMTLSATLTTREVA--ETISN---GEA--------------------GCFMHGPTFMGNP 314 (429)
T ss_dssp GT-CCCSEEEEC--GGGGTSSSCCEEEEECHHHH--HHHHT---STT--------------------SSCSCCCTTTTCH
T ss_pred cC-CCCCEEEec--ccccCCCccceEEEeCHHHH--HHhhc---CCC--------------------cccccCCCCCCCH
Confidence 11 156887655 999876 6789999988762 22211 000 000 1112 233
Q ss_pred HHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC---CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccC
Q 043646 360 VQM--IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN---QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIER 434 (625)
Q Consensus 360 ~~~--~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l---~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~ 434 (625)
++. ..++++.+ +. +.+.++.+.+++++.+.|.++ |++..+.+ .+.++.+.+ +.
T Consensus 315 ~~~~a~~aal~~~--~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~----~g~~~~~~~-~~------------ 372 (429)
T 1s0a_A 315 LACAAANASLAIL--ES---GDWQQQVADIEVQLREQLAPARDAEMVADVRV----LGAIGVVET-TH------------ 372 (429)
T ss_dssp HHHHHHHHHHHHH--HT---CHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEE----ETTEEEEEE-SS------------
T ss_pred HHHHHHHHHHHHH--Hh---CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEE----eeEEEEEEE-CC------------
Confidence 332 23444443 22 245677777888888888764 56653322 234444433 21
Q ss_pred CCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHH
Q 043646 435 NKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILA 514 (625)
Q Consensus 435 ~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~ 514 (625)
..+..++.+.|.+ +||.+++. .+++||++++.+|++|++++++
T Consensus 373 --~~~~~~l~~~l~~-~Gi~v~~~----------------------------------~~~iRis~~~~~t~e~i~~~~~ 415 (429)
T 1s0a_A 373 --PVNMAALQKFFVE-QGVWIRPF----------------------------------GKLIYLMPPYIILPQQLQRLTA 415 (429)
T ss_dssp --CBCHHHHHHHHHH-TTEECCCB----------------------------------TTEEEECCCTTCCHHHHHHHHH
T ss_pred --cccHHHHHHHHHH-CCCEEecc----------------------------------CCEEEEECCCCCCHHHHHHHHH
Confidence 1235678888864 79998741 2689999999999999999999
Q ss_pred HHHHHHHhh
Q 043646 515 ALEFIAAYG 523 (625)
Q Consensus 515 aL~~~~~~~ 523 (625)
+|++++...
T Consensus 416 ~l~~~~~~~ 424 (429)
T 1s0a_A 416 AVNRAVQDE 424 (429)
T ss_dssp HHHHHTSSG
T ss_pred HHHHHHHhh
Confidence 999887553
No 168
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.90 E-value=6.4e-22 Score=211.41 Aligned_cols=327 Identities=12% Similarity=0.076 Sum_probs=207.4
Q ss_pred eEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
..|+|.++. +..++.+.+++.+.+... .+... .+ ..+..+++++++++++|. + +++||+ |+++
T Consensus 40 ~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~-~~~~~-~~-----~~~~~~~l~~~la~~~g~--~-~v~~~~-gg~~ 108 (397)
T 2ord_A 40 NAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKL-IHCSN-LF-----WNRPQMELAELLSKNTFG--G-KVFFAN-TGTE 108 (397)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHC-SCCCT-TS-----EEHHHHHHHHHHHHTTTS--C-EEEEES-SHHH
T ss_pred CEEEECCccccccccCCCCHHHHHHHHHHHHhc-ccCcc-cc-----CCHHHHHHHHHHHHhcCC--C-eEEEeC-CHHH
Confidence 357787543 456789999998887542 22211 11 234677899999999983 3 789984 5555
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCe------------EEEEecCCCCCCCHH
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAE------------VVEIGLDDNGLLDIE 219 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~------------vv~v~~~~~~~ld~~ 219 (625)
++..++.++... .. . -++++..+|+..+..|.+....++..|++ ++.++.+ |++
T Consensus 109 a~~~al~~~~~~-----~~---~-~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~ 174 (397)
T 2ord_A 109 ANEAAIKIARKY-----GK---K-KSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFN-----NVE 174 (397)
T ss_dssp HHHHHHHHHHHH-----HH---H-HCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTT-----CHH
T ss_pred HHHHHHHHHHHH-----hh---c-CCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecCC-----CHH
Confidence 566666654100 00 0 01432224445555666665566777765 7777753 899
Q ss_pred HHHHHHHHhhhCCCCeEEEEecccCcccc-c---cCHHHHHHHHHHcCCEEEEeccCc-CCCc--cccCCCCCCCCCcEE
Q 043646 220 ALRSQLELYKAAKRPMLGSFSACSNVTGI-Y---SDTRSIARLLHQYGGFACFDFAAS-GPYV--KINLRSRNIDGYDAI 292 (625)
Q Consensus 220 ~L~~~l~~~~~~~~~~lv~~~~~~n~TG~-~---~~l~~I~~la~~~g~~vivD~A~~-~g~~--~id~~~~~~~~~D~v 292 (625)
+|+++++ +++++|++++++||||. + .++++|+++|++||+++|+|++++ ++.. +..+..++. .+|++
T Consensus 175 ~l~~~l~-----~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~d~~ 248 (397)
T 2ord_A 175 DLRRKMS-----EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGV-VPDVL 248 (397)
T ss_dssp HHHHHCC-----TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEE
T ss_pred HHHHHhh-----cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCC-CCCee
Confidence 9999887 57999999999999999 3 578999999999999999999987 2211 121222211 36877
Q ss_pred EEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHH-HHHHHHHHHHH
Q 043646 293 FLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV-QMIRAALAFWV 371 (625)
Q Consensus 293 ~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~-~~~~aal~~~~ 371 (625)
++ +|+++++.++|++++++++ . .+.+...+ ...+.+++. ..+.++++.+
T Consensus 249 s~--sK~~~~G~r~G~~~~~~~~--~-~l~~~~~~------------------------~~~~~~~~~~~a~~~~l~~~- 298 (397)
T 2ord_A 249 TT--AKGLGGGVPIGAVIVNERA--N-VLEPGDHG------------------------TTFGGNPLACRAGVTVIKEL- 298 (397)
T ss_dssp EE--CGGGGTTSCCEEEEECSTT--C-CCCTTSSC------------------------CSSTTCHHHHHHHHHHHHHH-
T ss_pred ee--ccccCCCcCeEEEEEchHh--c-ccCCCCcC------------------------CCCCCCHHHHHHHHHHHHHH-
Confidence 44 6999855568999998876 3 33221100 001112222 2223344433
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHhhCCC----CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHh
Q 043646 372 KEYIGYEVIKKQEDVYIESALGRILPN----QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLF 447 (625)
Q Consensus 372 ~~~~g~~~i~~~~~~l~~~l~~~L~~l----~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L 447 (625)
+. +.+.++.+++++++.+.|+++ +.+....+ .+.++.+.+... .+..++.+.|
T Consensus 299 -~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~~~~~~~---------------~~~~~l~~~l 355 (397)
T 2ord_A 299 -TK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRG----MGLMIGIQFREE---------------VSNREVATKC 355 (397)
T ss_dssp -TS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE----ETTEEEEEECTT---------------SCHHHHHHHH
T ss_pred -Hh---CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEE----EeEEEEEEECCh---------------HHHHHHHHHH
Confidence 22 356667777788888777653 33322211 345566544221 2356788888
Q ss_pred hhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 448 NDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 448 ~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.+ +||.+++|. ++++||++++.++++|+++++++|++++++
T Consensus 356 ~~-~gi~v~~~~---------------------------------~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 356 FE-NKLLVVPAG---------------------------------NNTIRFLPPLTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp HH-TTEECEEET---------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HH-CCCEEccCC---------------------------------CCEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence 66 799998641 378999999899999999999999988753
No 169
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.89 E-value=7.7e-22 Score=212.80 Aligned_cols=304 Identities=13% Similarity=0.030 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHH--HHHHHHhcccccchhhhhhhhccCC---C-------CceEEEEcCCC
Q 043646 123 VHEASNYIKRCLGGGQADAIIFCGAGTTAAI--KRLQEVMGITVPSIMRDKLITSLRD---E-------ERWVVFLGPYE 190 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~~~~~vift~sGttaal--~~l~~~l~~~~~~~~~~~~~~~l~~---g-------d~~~Vlv~~~~ 190 (625)
..++|+.++++++++++ +|++| +|+++++ ..++.++. ++ | |+..|++..+.
T Consensus 78 ~~~lr~~ia~~~~~~~~-~i~~t-~G~~~al~l~~~~~~l~---------------~~~~~g~~~~~~~d~~~Vl~~~p~ 140 (422)
T 3d6k_A 78 IADIRELWAEALGLPAD-LVVAQ-DGSSLNIMFDLISWSYT---------------WGNNDSSRPWSAEEKVKWLCPVPG 140 (422)
T ss_dssp CHHHHHHHHHHHTCCGG-GEEEC-SSCHHHHHHHHHHHHHH---------------HCCTTCSSCGGGSSCCEEEEEESC
T ss_pred CHHHHHHHHHHhCCChh-HEEEe-cchHHHHHHHHHHHHhc---------------CcccccccccccCCCCEEEEeCCc
Confidence 45688999999998876 89998 6777765 66666652 22 2 22248899999
Q ss_pred CchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEE-EecccCccccccCHH---HHHHHHH-HcCCE
Q 043646 191 HHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGS-FSACSNVTGIYSDTR---SIARLLH-QYGGF 265 (625)
Q Consensus 191 h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~-~~~~~n~TG~~~~l~---~I~~la~-~~g~~ 265 (625)
|+.+...++..|++++.+|++.++ +|+++|++++++ .++++|+ +++++||||.+.+.+ +|+++|+ +||++
T Consensus 141 y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~----~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~ 215 (422)
T 3d6k_A 141 YDRHFTITEHFGFEMINVPMTDEG-PDMGVVRELVKD----PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFR 215 (422)
T ss_dssp CHHHHHHHHHHTCEEEEEEEETTE-ECHHHHHHHHTS----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCE
T ss_pred cHHHHHHHHHcCCEEEecCCCCCC-CCHHHHHHHHhc----CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCE
Confidence 999988888899999999998765 899999999973 3688877 799999999999876 7778887 89999
Q ss_pred EEEeccCcC---CCcc---ccC----CCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEee
Q 043646 266 ACFDFAASG---PYVK---INL----RSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYV 334 (625)
Q Consensus 266 vivD~A~~~---g~~~---id~----~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~ 334 (625)
+|+|++++. .... ..+ +.....+.++++.|++|+ ++|+ .+|++++++++.. .+..
T Consensus 216 li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~GlriG~~~~~~~l~~--~l~~----------- 281 (422)
T 3d6k_A 216 IVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THAGSGVSFFASSKENIE--WYAS----------- 281 (422)
T ss_dssp EEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCTTSSCEEEECCHHHHH--HHHH-----------
T ss_pred EEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cCcccceEEEEeCHHHHH--HHHH-----------
Confidence 999999873 1110 111 001112457888999998 5563 4899999877621 1110
Q ss_pred ccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhh----cCHHHHHHHHHHHHHHHHHhh----CCCCcEEEeCC
Q 043646 335 NAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEY----IGYEVIKKQEDVYIESALGRI----LPNQNIQVLGN 406 (625)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~----~g~~~i~~~~~~l~~~l~~~L----~~l~gv~v~~~ 406 (625)
.......+++.+.+. ++.+++ .+. ...+.++++.++.++++.+.| .+++++++..+
T Consensus 282 -------------~~~~~~~~~~~~~q~--a~~~~l-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p 345 (422)
T 3d6k_A 282 -------------HANVRGIGPNKLNQL--AHAQFF-GDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSP 345 (422)
T ss_dssp -------------HHHHHCSCCCHHHHH--HHHHHH-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCC
T ss_pred -------------HHHhhcCCCCHHHHH--HHHHHH-hCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCC
Confidence 011122233333332 122222 110 112233444444444444444 34445776655
Q ss_pred CCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeec-CCCCCchhhHhhhcCChhhHHHHHHHHH
Q 043646 407 TSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARG-GCACAGPYGHTLLAFDQTRSLEIRSAIQ 485 (625)
Q Consensus 407 ~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~-G~~~~~~~~~~~l~~~~~~~~~~~~~~~ 485 (625)
. .+.+.+...+.. +..++.+.| .++||.+++ |.+|......
T Consensus 346 ~----~g~~~~~~~~~~---------------~~~~~~~~l-~~~gV~v~~~g~~f~~~~~~------------------ 387 (422)
T 3d6k_A 346 T----GGYFISVDVVPG---------------TASRVVELA-KEAGIALTGAGSSFPLHNDP------------------ 387 (422)
T ss_dssp S----BSSCEEEEESTT---------------CHHHHHHHH-HHTTEECCCTTTTSGGGCCT------------------
T ss_pred C----cceEEEEECCCC---------------CHHHHHHHH-HHCCeEEEcCccccCCCCCC------------------
Confidence 2 344444444321 245677777 458999998 4445311000
Q ss_pred hCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 486 KGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 486 ~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.++++|||++. ++++++++++++|++++.+.
T Consensus 388 ------~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~ 418 (422)
T 3d6k_A 388 ------NNENIRLAPSL-PPVAELEVAMDGFATCVLMA 418 (422)
T ss_dssp ------TSCEEEECCSS-SCHHHHHHHHHHHHHHHHHH
T ss_pred ------CCCeEEEecCC-CCHHHHHHHHHHHHHHHHHH
Confidence 24899999987 89999999999999987653
No 170
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.89 E-value=1.8e-21 Score=211.92 Aligned_cols=385 Identities=12% Similarity=0.073 Sum_probs=225.7
Q ss_pred ccccccCCCCCCCCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCC---cchHHHHHHHHHhhCCCCCCCCCCc
Q 043646 36 CSEFKNDHHPPHSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASG---RSLRYIEDYIINNVLPFYGNTHTSD 112 (625)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~---~~p~~v~ea~~~~l~~~~~n~~~~~ 112 (625)
+..++...+............++.... . ..+... ....|+|+.+.. +.++.+.+++... . . .
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~g--~-~~~~l~---~~~~ylD~~~~~~~~~~~~~~~~a~~~~------~--~-~ 70 (456)
T 2ez2_A 6 EPFRIKSVETVSMIPRDERLKKMQEAG--Y-NTFLLN---SKDIYIDLLTDSGTNAMSDKQWAGMMMG------D--E-A 70 (456)
T ss_dssp CSSCCCCCCCCCCCCHHHHHHHHHHTT--T-CGGGSC---GGGCSEECSCSSSCCCCCHHHHHHHTTC------C--C-C
T ss_pred CCeeeeeecccCCCCHHHHHHHHHHCC--C-CcccCC---cccceeeeccccCCccCCHHHHHHhhcc------h--h-h
Confidence 344444454554555566666665432 1 122222 234688885543 4556777776411 1 0 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCC-
Q 043646 113 SYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEH- 191 (625)
Q Consensus 113 ~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h- 191 (625)
+.. .....++++.+++++|.+ ++++|++|+ +++..++.++ +++|| +++..+|
T Consensus 71 y~~----~~~~~~l~~~la~~~~~~---~~~~~~~gt-~a~~~al~~l---------------~~~gd----i~~~~~~~ 123 (456)
T 2ez2_A 71 YAG----SENFYHLERTVQELFGFK---HIVPTHQGR-GAENLLSQLA---------------IKPGQ----YVAGNMYF 123 (456)
T ss_dssp SSS----CHHHHHHHHHHHHHHCCS---EEEEESSHH-HHHHHHHHHH---------------CCTTC----EEEESSCC
T ss_pred ccc----ChhHHHHHHHHHHHhCCC---cEEEeCCcH-HHHHHHHHHh---------------CCCCC----Eecccccc
Confidence 111 223567889999999874 688885555 5677776665 46777 4445566
Q ss_pred chhHHHHHHcCCeEEEEecCC----------CCCCCHHHHHHHHHHhhhCCCCeEEEEecccC-ccccccC---HHHHHH
Q 043646 192 HSNLLSWRQSLAEVVEIGLDD----------NGLLDIEALRSQLELYKAAKRPMLGSFSACSN-VTGIYSD---TRSIAR 257 (625)
Q Consensus 192 ~s~~~~~~~~G~~vv~v~~~~----------~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n-~TG~~~~---l~~I~~ 257 (625)
.++...++..|++++.++++. ++.+|+++|++++++.. ..++++|++++++| +||.+.| +++|++
T Consensus 124 ~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t-~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~ 202 (456)
T 2ez2_A 124 TTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKG-AENIAYICLAVTVNLAGGQPVSMANMRAVRE 202 (456)
T ss_dssp HHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHC-GGGEEEEEEESSBTTTTSBCCCHHHHHHHHH
T ss_pred chhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhcc-ccceeEEEEeccCCCCCCccCCHHHHHHHHH
Confidence 777778888999999998863 25789999999998420 01248999999998 9999887 999999
Q ss_pred HHHHcCCEEEEeccCcCC-----------CccccCC----CCCCCCCcEEEEcCCCCCCCCCCceEEEE-eccccccCCC
Q 043646 258 LLHQYGGFACFDFAASGP-----------YVKINLR----SRNIDGYDAIFLATHKFLGGPGTPGILLI-SKALYQLGSS 321 (625)
Q Consensus 258 la~~~g~~vivD~A~~~g-----------~~~id~~----~~~~~~~D~v~~S~hK~lggp~g~G~l~v-~~~~~~l~~~ 321 (625)
+|++||+++|+|++|+.| +....+. ... ...|++++|+||+++.| ..|+++. ++++.. .+
T Consensus 203 la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~~S~kk~~~~~-~gG~~~~~~~~~~~--~~ 278 (456)
T 2ez2_A 203 LTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMF-SYADGCTMSGKKDCLVN-IGGFLCMNDDEMFS--SA 278 (456)
T ss_dssp HHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHH-TTCSEEEEETTTTTCCS-SCEEEEESCHHHHH--HH
T ss_pred HHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhc-ccCCEEEEeCcccCCCC-ceeEEEECCHHHHH--HH
Confidence 999999999999998864 2111110 000 14689888999997644 3588888 455521 11
Q ss_pred CCcc-cCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCc
Q 043646 322 PPST-CGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQN 400 (625)
Q Consensus 322 ~p~~-~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~g 400 (625)
.+.. .+.+. . ...|. +...+..+++... +... +...++.+.+.+++.+.|.+. +
T Consensus 279 ~~~~~~~~~~------------------~--~~~~~-~~~~~~a~a~~~~--~~~~-~~~~~~~~~~~~~l~~~L~~~-g 333 (456)
T 2ez2_A 279 KELVVVYEGM------------------P--SYGGL-AGRDMEAMAIGLR--EAMQ-YEYIEHRVKQVRYLGDKLKAA-G 333 (456)
T ss_dssp HHHHHHHTCC------------------T--TTTTC-CHHHHHHHHHHHH--HHTC-HHHHHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHhhccCc------------------c--cccCc-chhHHHHHHHHHH--HHhH-HHHHHHHHHHHHHHHHHHhcC-C
Confidence 1100 00000 0 00111 2122211133322 2222 445566677788888888774 6
Q ss_pred EEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHH-----HHHhhhhcCeeeec-CCCCCchhhHhhhcCCh
Q 043646 401 IQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFV-----ATLFNDLFGIQARG-GCACAGPYGHTLLAFDQ 474 (625)
Q Consensus 401 v~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v-----~~~L~~~~gI~v~~-G~~~~~~~~~~~l~~~~ 474 (625)
+++..+. . +.+.+....... .+++..++ ++.|.+++||.+.+ |.+|.+. +...+.+
T Consensus 334 ~~~~~p~---~-~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~--~~~~g~~- 395 (456)
T 2ez2_A 334 VPIVEPV---G-GHAVFLDARRFC-----------EHLTQDEFPAQSLAASIYVETGVRSMERGIISAGR--NNVTGEH- 395 (456)
T ss_dssp CCBCSSC---C-SSEEEEEHHHHT-----------TTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCB--CTTTCSB-
T ss_pred CccccCC---C-ceEEEEEhHHhc-----------CCCChhhccHHHHHHHHHHhcCeeeeccccccccc--Ccccccc-
Confidence 6665543 2 333333221000 00112233 66664557998654 4433110 0000000
Q ss_pred hhHHHHHHHHHhCCCCCCCcEEEEecCCC-CCHHHHHHHHHHHHHHHHhhh
Q 043646 475 TRSLEIRSAIQKGYLGVKPGWTRITFPYY-MSNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 475 ~~~~~~~~~~~~g~~g~~~g~iRis~~~~-~t~edid~ll~aL~~~~~~~~ 524 (625)
.....+++||+++.+ ++++|+++++++|++++.+..
T Consensus 396 --------------~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 396 --------------HRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp --------------CCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred --------------ccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 000137899999877 899999999999999987743
No 171
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.89 E-value=1.3e-22 Score=221.50 Aligned_cols=386 Identities=15% Similarity=0.076 Sum_probs=220.5
Q ss_pred CCCCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHH
Q 043646 46 PHSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHE 125 (625)
Q Consensus 46 ~~~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~ 125 (625)
...........+++... . ..+....| ..|+|+.+.... +.+.+++.+.+.. + .. .|... ....+
T Consensus 17 ~~~~~~~~~~~~~~~~g--~-~~~~~~~g---~~ylD~~~~~~~-~~v~~a~~~~~~~--~--~~-~y~~~----~~~~~ 80 (467)
T 1ax4_A 17 IRVPSREEREAALKEAG--Y-NPFLLPSS---AVYIDLLTDSGT-NAMSDHQWAAMIT--G--DE-AYAGS----RNYYD 80 (467)
T ss_dssp CCCCCHHHHHHHHHHTT--S-CGGGSCGG---GCSEECSCSSSC-CCEEHHHHHHHHT--C--CC-CSSSC----HHHHH
T ss_pred ccccchhHHHHHHHhcC--c-CcccCCCC---ceeeecccCcCC-HHHHHHHHHHHhh--c--cc-ccccC----ccHHH
Confidence 33445566666666532 1 22333323 459999777765 5666666665421 0 00 11111 23556
Q ss_pred HHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccC----CCCc-eEEEEcCCCCchhHHHHHH
Q 043646 126 ASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLR----DEER-WVVFLGPYEHHSNLLSWRQ 200 (625)
Q Consensus 126 ~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~----~gd~-~~Vlv~~~~h~s~~~~~~~ 200 (625)
++++++++++.+ +++||+ |.++++..++.++ +. +||+ ..|+++.+.|.+....+..
T Consensus 81 l~~~la~~~~~~---~v~~t~-ggt~A~~~al~~~---------------~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~ 141 (467)
T 1ax4_A 81 LKDKAKELFNYD---YIIPAH-QGRGAENILFPVL---------------LKYKQKEGKAKNPVFISNFHFDTTAAHVEL 141 (467)
T ss_dssp HHHHHHHHHCCC---EEEEES-SHHHHHHHHHHHH---------------HHHHHHTTCCSSCEEEESSCCHHHHHHHHH
T ss_pred HHHHHHHHcCCC---cEEEcC-CcHHHHHHHHHHH---------------HHhhccCCCccceEEEeccccchhhHHHhc
Confidence 889999999872 799995 4455666666655 23 6763 1155563333555666777
Q ss_pred cCCeEEEEecCC----------CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcc-ccccC---HHHHHHHHHHcCCEE
Q 043646 201 SLAEVVEIGLDD----------NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVT-GIYSD---TRSIARLLHQYGGFA 266 (625)
Q Consensus 201 ~G~~vv~v~~~~----------~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~T-G~~~~---l~~I~~la~~~g~~v 266 (625)
.|++++.++.+. ++.+|+++|++++++.. .+++++|++++++|+| |.+.+ +++|+++|++||+++
T Consensus 142 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~-~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~l 220 (467)
T 1ax4_A 142 NGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG-ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFV 220 (467)
T ss_dssp TTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC-GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCE
T ss_pred cCCceecccccccccccccCCcccccCHHHHHHHHHhcC-CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEE
Confidence 899888775421 45789999999998421 1268999999999999 77754 678999999999999
Q ss_pred EEeccCcC-----------CCccccCCCCC---CCCCcEEEEcCCCCCCCCCCceEEEEe-c-cccccCCCCCcc--cCC
Q 043646 267 CFDFAASG-----------PYVKINLRSRN---IDGYDAIFLATHKFLGGPGTPGILLIS-K-ALYQLGSSPPST--CGG 328 (625)
Q Consensus 267 ivD~A~~~-----------g~~~id~~~~~---~~~~D~v~~S~hK~lggp~g~G~l~v~-~-~~~~l~~~~p~~--~gg 328 (625)
|+|++++. ++..+++..+. ...+|++++|+||++|.|.| |+++.+ + ++. +.+.... .++
T Consensus 221 i~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~d~~~l~--~~~~~~~~~~~~ 297 (467)
T 1ax4_A 221 VMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG-GLVAIRDNEEIF--TLARQRCVPMEG 297 (467)
T ss_dssp EEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC-EEEEESSCHHHH--HHHHHHHHHHTC
T ss_pred EEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccCCCCcc-eEEEeCCHHHHH--HHHHhhcccccc
Confidence 99998765 33333222110 01478999999999987645 677776 4 542 1111000 010
Q ss_pred ceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCC
Q 043646 329 GTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTS 408 (625)
Q Consensus 329 g~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~ 408 (625)
. ...++.+...+...+..+. .....+.+. +...+++++.+.|.+ +++.+..+.
T Consensus 298 ~----------------------~~~~~~~~~~~~a~~~~l~--~~~~~~~~~-~~~~~~~~l~~~L~~-~~~~~~~~~- 350 (467)
T 1ax4_A 298 F----------------------VTYGGLAGRDMAAMVQGLE--EGTEEEYLH-YRIGQVKYLGDRLRE-AGIPIQYPT- 350 (467)
T ss_dssp S----------------------TTTTTCCHHHHHHHHHHHH--HTTCHHHHH-HHHHHHHHHHHHHHH-TTCCBCSSC-
T ss_pred c----------------------cccCCccchHHHHHHHHHH--HhhhhhHHH-HHHHHHHHHHHHHHh-CCCCcccCC-
Confidence 0 0123333332221111111 111112232 333557778888876 467665543
Q ss_pred CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeec-CCCCCchhhHhhhcCChhhHHHHHHHHHhC
Q 043646 409 VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARG-GCACAGPYGHTLLAFDQTRSLEIRSAIQKG 487 (625)
Q Consensus 409 ~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g 487 (625)
++..+.+.+ ...... ....+++..++++.|.+++||.+++ |.++.+.. .. .+.+.
T Consensus 351 --~~~~~~~~~-~~~~~~------~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~-~~-~g~~~------------- 406 (467)
T 1ax4_A 351 --GGHAVFVDC-KKLVPQ------IPGDQFPAQAVINALYLESGVRAVEIGSFLLGRD-PA-TGEQK------------- 406 (467)
T ss_dssp --CSSEEEEES-TTTCTT------SCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBC-TT-TCSBC-------------
T ss_pred --CceEEEEeh-hhhccc------cccCCCCHHHHHHHHHHhcCceeeecCccccccc-cc-ccccc-------------
Confidence 233333331 000000 0001233567888884557999987 54321000 00 00000
Q ss_pred CCCCCCcEEEEecCC-CCCHHHHHHHHHHHHHHHHhh
Q 043646 488 YLGVKPGWTRITFPY-YMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 488 ~~g~~~g~iRis~~~-~~t~edid~ll~aL~~~~~~~ 523 (625)
-...+++||+++. .+|++|+++++++|++++.+.
T Consensus 407 --~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~ 441 (467)
T 1ax4_A 407 --HADMEFMRLTIARRVYTNDHMDYIADALIGLKEKF 441 (467)
T ss_dssp --CCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHH
T ss_pred --ccccceEEEecccccCCHHHHHHHHHHHHHHHHhh
Confidence 0013799999984 489999999999999988764
No 172
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.89 E-value=1.3e-21 Score=211.11 Aligned_cols=326 Identities=17% Similarity=0.140 Sum_probs=198.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
+++......+++++++++++|.+. .+++ ++|+ +++..++.++ +++||+ |+++...|++.
T Consensus 76 y~r~~~p~~~~le~~lA~l~g~~~--~v~~-~sG~-~Ai~~al~al---------------~~~Gd~--Vi~~~~~y~~~ 134 (430)
T 3ri6_A 76 YSRSSNPTVEDLEQRLKNLTGALG--VLAL-GSGM-AAISTAILTL---------------ARAGDS--VVTTDRLFGHT 134 (430)
T ss_dssp ----CCHHHHHHHHHHHHHHTCSE--EEEE-SCHH-HHHHHHHHHH---------------CCTTCE--EEEETTCCHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHCCCc--EEEE-CCHH-HHHHHHHHHH---------------hCCCCE--EEEcCCCchhH
Confidence 444445667889999999999853 3445 4786 6677776665 578885 99999999988
Q ss_pred HHH----HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEec
Q 043646 195 LLS----WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 195 ~~~----~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~ 270 (625)
... ++..|++++.++.+ |+++|+++++ +++++|++++++||||.+.|+++|+++|+++|+++|+|+
T Consensus 135 ~~~~~~~~~~~G~~~~~v~~~-----d~~~l~~ai~-----~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~ 204 (430)
T 3ri6_A 135 LSLFQKTLPSFGIEVRFVDVM-----DSLAVEHACD-----ETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDT 204 (430)
T ss_dssp HHHHHTHHHHTTCEEEEECTT-----CHHHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEEC
T ss_pred HHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhhC-----CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEEC
Confidence 773 45679999999876 8999999987 589999999999999999999999999999999999999
Q ss_pred cCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCC--CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccch
Q 043646 271 AASGPYVKINLRSRNIDGYDAIFLATHKFLGGPG--TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDI 348 (625)
Q Consensus 271 A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~--g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~ 348 (625)
+++.++. .+.... ++|+++.|++|++++++ -.|+++.+.... +... ..+.. ....+. ...+....
T Consensus 205 a~~~~~~-~~~~~~---g~div~~S~sK~l~g~g~~~gG~vv~~~~~~-~~~~-~~~~~-----l~~~~g--~~~~i~~~ 271 (430)
T 3ri6_A 205 TMTPPYL-LEAKRL---GVDIEVLSSTKFISGGGTSVGGVLIDHGLFE-WKSL-PSLAP-----YYAKAG--PMAFLYKA 271 (430)
T ss_dssp TTSCTTT-CCGGGG---TCSEEEEECCCEEETTEEECCEEEEECSCSC-GGGS-TTTHH-----HHHHHG--GGHHHHHH
T ss_pred CCccccc-CChHHc---CCEEEEECCcccccCCCCceEEEEEECChHH-hhhc-cchhh-----hhhhhc--hhhHHHHH
Confidence 9998765 233333 78999999999999773 235555443320 0000 00000 000000 00000000
Q ss_pred ---hhhhcCCChhHH-HHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC-C-----------C
Q 043646 349 ---EERENGGTPQIV-QMI-RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS-V-----------K 410 (625)
Q Consensus 349 ---~~~~~~gt~~~~-~~~-~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~-~-----------~ 410 (625)
..+...++.+.. +.+ ..+++. .....++..+++.++.+.|.+.|+++ |..|.- . .
T Consensus 272 ~~~~~~~~g~~~~~~~a~l~l~~l~~-------l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g 344 (430)
T 3ri6_A 272 RKEVFQNLGPSLSPHNAYLQSLGLET-------MALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFR 344 (430)
T ss_dssp HHTHHHHHCCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCS
T ss_pred HHHHHHhcCCCCCHHHHHHHHhhhhh-------HHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCC
Confidence 001111222211 111 111111 23344556677889999999999886 444421 1 1
Q ss_pred Ccc-eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHh
Q 043646 411 RQA-ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQK 486 (625)
Q Consensus 411 ~~~-i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~ 486 (625)
.++ +++|.+.... ....+.+.| +.+++.+..|..++. |....+..++.+.-
T Consensus 345 ~Gg~~lsf~l~~~~---------------~~~~~~~~l-~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~--------- 399 (430)
T 3ri6_A 345 YAGSILTFELESKE---------------ASYRFMDAL-KLIRRATNIHDNKSLILSPYHVIYALNSHEER--------- 399 (430)
T ss_dssp SCCSEEEEECSSHH---------------HHHHHHHHC-SSSEECSCCSCSSCEEECTGGGC------------------
T ss_pred CCceEEEEEECCHH---------------HHHHHHHhC-CcceecCCCCCCCceeeCCcccccccCCHHHH---------
Confidence 256 8888875210 134556666 456777777765542 11111111111100
Q ss_pred CCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 487 GYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 487 g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.-.|+.+++||||++. |+++.+++.|++.+
T Consensus 400 ~~~g~~~~liRlsvG~----E~~~dl~~dl~~al 429 (430)
T 3ri6_A 400 LKLEISPAMMRLSVGI----EEIEDLKEDILQAL 429 (430)
T ss_dssp CGGGSCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred HhcCCCCCeEEEEecc----CCHHHHHHHHHHhh
Confidence 0135678999999985 55566666665543
No 173
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.88 E-value=8.7e-22 Score=218.69 Aligned_cols=361 Identities=11% Similarity=0.060 Sum_probs=219.9
Q ss_pred chHHHHHHHHHhhCC-CCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--C--CCCcEEEeCChHHHHHHHHHHHhccc
Q 043646 89 SLRYIEDYIINNVLP-FYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--G--QADAIIFCGAGTTAAIKRLQEVMGIT 163 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~-~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~--~~~~vift~sGttaal~~l~~~l~~~ 163 (625)
.++.+++++.+.+.. .|..|.. ...++.+.+.+++++.++. . ++++|++| +|+++++..++.++...
T Consensus 116 ~~~~~v~a~~~~~~~~~y~~~~~-------g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t-~G~t~al~~~~~~l~~~ 187 (533)
T 3f6t_A 116 NRDKVVAEWVNGAVANNYPVPDR-------CLVNTEKIINYFLQELSYKDANLAEQTDLFPT-EGGTAAIVYAFHSLAEN 187 (533)
T ss_dssp CHHHHHHHHHHHHHTCSCCSSSS-------CCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEE-EHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHhCCCCCCcc-------cHHHHHHHHHHHHHHhcCCCCCCCCcceEEEE-CCHHHHHHHHHHHhhhh
Confidence 456666666665532 2222222 2345556666666555232 2 22379998 89999999988863100
Q ss_pred ccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecC----CCCCCCHHHHHHHHHHhhhCCCCeEEEE
Q 043646 164 VPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLD----DNGLLDIEALRSQLELYKAAKRPMLGSF 239 (625)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~----~~~~ld~~~L~~~l~~~~~~~~~~lv~~ 239 (625)
..+++||+ |+++.++|+++...++..|++++.++++ .++.+|+++|+++++ +++++|++
T Consensus 188 ----------~l~~~gd~--Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~-----~~~k~v~l 250 (533)
T 3f6t_A 188 ----------HLLKKGDK--IAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKD-----PSIKALIV 250 (533)
T ss_dssp ----------TSSCTTCE--EEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSC-----TTEEEEEE
T ss_pred ----------hccCCcCE--EEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhC-----CCCeEEEE
Confidence 01578885 9999999999988888889999999985 356789999999887 68999999
Q ss_pred ecccCccccccCHH---HHHHHHH-HcCCEEEEeccCcCCCc-cccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEec
Q 043646 240 SACSNVTGIYSDTR---SIARLLH-QYGGFACFDFAASGPYV-KINLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISK 313 (625)
Q Consensus 240 ~~~~n~TG~~~~l~---~I~~la~-~~g~~vivD~A~~~g~~-~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~ 313 (625)
++++||||.+.+.+ +|+++|+ +||+++|+|++++.... ...+... ..+.++++.|++|.+|.|+ .+|++++++
T Consensus 251 ~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~-~~~~~i~~~S~SK~~g~~G~RiG~l~~~~ 329 (533)
T 3f6t_A 251 VNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSV-VPYNTMLVYSYSKLFGCTGWRLGVIALNE 329 (533)
T ss_dssp ESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHH-SGGGEEEEEESHHHHTCGGGCEEEEEEES
T ss_pred eCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhc-CCCCEEEEecCcccCCCcccceEEEEECc
Confidence 99999999998876 7888888 58999999999773221 1111111 1134688999999998443 289999988
Q ss_pred c-----ccccCCCCCcc-------cCCceEEeeccccccccccc-------cchhhhhcCCChhHHHHHHH--HHHHHH-
Q 043646 314 A-----LYQLGSSPPST-------CGGGTVNYVNAFDEKDTLYL-------EDIEERENGGTPQIVQMIRA--ALAFWV- 371 (625)
Q Consensus 314 ~-----~~~l~~~~p~~-------~ggg~v~~~~~~~~~~~~~~-------~~~~~~~~~gt~~~~~~~~a--al~~~~- 371 (625)
+ + +..+.+.. ++.-+. ......+. .........+.+...+.+.+ ++..+.
T Consensus 330 ~~~~~~l--i~~l~~~~~~~~~~~~~~~~~------~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~ 401 (533)
T 3f6t_A 330 KNVFDDN--IAHLDKVELRQLHKRYSSVVL------DPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLT 401 (533)
T ss_dssp SCHHHHH--HHTSCHHHHHHHHHHHHTTCS------CGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH--HHhcchhhHHHHHhhhhcccc------CcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhh
Confidence 7 3 12221100 000000 00000000 00011112233333333222 233321
Q ss_pred ----H-hhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCC--------CC
Q 043646 372 ----K-EYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNK--------PL 438 (625)
Q Consensus 372 ----~-~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~--------~l 438 (625)
. .....+.++++.+..++++.+.|. + ++.+..+ ..+.+.+.-.+... ....+. ..
T Consensus 402 ~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~-~~~~~~~----~~g~~~~~~l~~~~------~~~~g~~~~~~~~~~~ 469 (533)
T 3f6t_A 402 STNGGSDDPYIDIARKLVSERYDQLHDAMQ-A-PKDETDT----NTHYYSLIDIYRLA------EKIYGKEFRDYLTNNF 469 (533)
T ss_dssp CBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-C-CCCCSTT----BCCSEEEEEHHHHH------HHHHCHHHHHHHHHHC
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHhcC-C-CccccCC----CceEEEEEehHhhh------hhccchHHHHHhhccC
Confidence 0 111245667777888889999996 5 3443333 44555554432100 000000 02
Q ss_pred ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 439 HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 439 ~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
+..+++..|.+++||.+.+|..|..+ ++++|||++. .++++++.++++|++
T Consensus 470 ~~~~~~~~ll~~~GV~v~pg~~f~~~----------------------------~~~iRls~a~-~~~e~i~~~i~~L~~ 520 (533)
T 3f6t_A 470 EQVDFLLKLAEKNGVVLVDGVGFGAK----------------------------PGELRVSQAN-LPTEDYALIGKQVLE 520 (533)
T ss_dssp CHHHHHHHHHHHTTSSSCTTEEECSS----------------------------TTEEEEESSS-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCEEEeCCcccCCC----------------------------CCEEEEEEee-CCHHHHHHHHHHHHH
Confidence 34466666667789999999888632 4899999964 578999999999999
Q ss_pred HHHhhh
Q 043646 519 IAAYGH 524 (625)
Q Consensus 519 ~~~~~~ 524 (625)
++.+..
T Consensus 521 ~l~~~~ 526 (533)
T 3f6t_A 521 LLKEYY 526 (533)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887643
No 174
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.81 E-value=1.3e-24 Score=231.93 Aligned_cols=331 Identities=14% Similarity=0.085 Sum_probs=216.0
Q ss_pred cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHHHHHHHHhccccc
Q 043646 88 RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG--GGQADAIIFCGAGTTAAIKRLQEVMGITVP 165 (625)
Q Consensus 88 ~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g--~~~~~~vift~sGttaal~~l~~~l~~~~~ 165 (625)
++++.+.+++.+.+.. ... .| .....++.+++.+++++.+| .+++ +|++| +|+++++..++.++
T Consensus 44 ~~~~~v~~a~~~~~~~----~~~-~y--~~~~~~l~~~la~~l~~~~g~~~~~~-~v~~~-~g~~~a~~~~~~~~----- 109 (392)
T 3b1d_A 44 EVMPEVKQAIHDYAEQ----LVY-GY--TYASDELLQAVLDWEKSEHQYSFDKE-DIVFV-EGVVPAISIAIQAF----- 109 (392)
Confidence 3466788888776632 111 11 11134455555555555566 4444 78888 78888888887776
Q ss_pred chhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-C--CCCCHHHHHHHHHHhhhCCCCeEEEEecc
Q 043646 166 SIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-N--GLLDIEALRSQLELYKAAKRPMLGSFSAC 242 (625)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~--~~ld~~~L~~~l~~~~~~~~~~lv~~~~~ 242 (625)
+++||+ |++..+.|++....++..|++++.++.++ + ..+|+++|++++++ +++++|+++++
T Consensus 110 ----------~~~gd~--vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~----~~~~~v~~~~~ 173 (392)
T 3b1d_A 110 ----------TKEGEA--VLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVE----NDVKLYLLCNP 173 (392)
Confidence 467775 88999999998888888899999998853 2 35899999999873 36889999999
Q ss_pred cCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCCC--CCCcEEEEcCCCCCCCCC-CceEEEEe
Q 043646 243 SNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRNI--DGYDAIFLATHKFLGGPG-TPGILLIS 312 (625)
Q Consensus 243 ~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~~--~~~D~v~~S~hK~lggp~-g~G~l~v~ 312 (625)
+||||.+.+ +++|+++|++||+++|+|++++.... ...+..+.. .+.++++.|++|++|.|+ .+|+++++
T Consensus 174 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 253 (392)
T 3b1d_A 174 HNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIE 253 (392)
Confidence 999999976 88999999999999999999875321 122222211 244678889999997444 47999987
Q ss_pred cc-ccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 043646 313 KA-LYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESA 391 (625)
Q Consensus 313 ~~-~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l 391 (625)
++ + .+.+.... ..+..++++..... ++.+.+.......+.+.++.+.+++++
T Consensus 254 ~~~~--~~~~~~~~------------------------~~~~~~~~~~~~~~-a~~~~l~~~~~~~~~~~~~~~~~~~~l 306 (392)
T 3b1d_A 254 NPTL--CAQFKHQQ------------------------LVNNHHEVSSLGYI-ATETAYRYGKPWLVALKAVLEENIQFA 306 (392)
Confidence 54 5 22222111 00111222222211 111111111223556677777888888
Q ss_pred HHhhCC-CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhh
Q 043646 392 LGRILP-NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLL 470 (625)
Q Consensus 392 ~~~L~~-l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l 470 (625)
.+.|.+ +|++++..+. ++.+.+...+.. +.+..++.+.|.+++||.+++|..|...
T Consensus 307 ~~~l~~~~~~~~~~~~~----~~~~~~i~~~~~-------------~~~~~~l~~~l~~~~gi~v~~g~~f~~~------ 363 (392)
T 3b1d_A 307 VEYFAQEAPRLKVMKPQ----GTYLIWLDFSDY-------------GLTDDALFTLLHDQAKVILNRGSDYGSE------ 363 (392)
Confidence 888887 7888776553 344433322210 1234567788865689999988766410
Q ss_pred cCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 471 AFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 471 ~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.++++||+++. ++++++.++++|++++.
T Consensus 364 ---------------------~~~~iRi~~~~--~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 364 ---------------------GELHARLNIAA--PKSLVEEICKRIVCCLP 391 (392)
Confidence 24789999874 57999999999987653
No 175
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.88 E-value=2.4e-20 Score=200.92 Aligned_cols=343 Identities=10% Similarity=0.046 Sum_probs=206.9
Q ss_pred EeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 79 TYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 79 ~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
.|+|..+ .+..++.+.+++.+.+... .+... . +.......++++.|+++++.+.+++|+|| +|++++
T Consensus 42 ~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~-~~~~~-~----~~~~~~~~~l~~~la~~~~~~~~~~v~~~-~g~~~a 114 (426)
T 1sff_A 42 EYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKL-SHTCF-Q----VLAYEPYLELCEIMNQKVPGDFAKKTLLV-TTGSEA 114 (426)
T ss_dssp EEEESSHHHHTCTTCBTCHHHHHHHHHHTTTC-SCCCT-T----TEECHHHHHHHHHHHHHSSCSSCEEEEEE-SSHHHH
T ss_pred EEEEcccChhhcccCCCCHHHHHHHHHHHHhC-CCccc-c----ccCCHHHHHHHHHHHHhCCcccccEEEEe-CchHHH
Confidence 4677642 3446789999998887542 22111 1 11234567799999999942332489998 677777
Q ss_pred HHHHHH---HhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCe-------------EEEEecCC----
Q 043646 153 IKRLQE---VMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAE-------------VVEIGLDD---- 212 (625)
Q Consensus 153 l~~l~~---~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~-------------vv~v~~~~---- 212 (625)
+..++. .+ .+++ + +|+..+..|.+....+...|.+ ++.++++.
T Consensus 115 ~~~~~~~a~~~---------------~~~~-~-vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~ 177 (426)
T 1sff_A 115 VENAVKIARAA---------------TKRS-G-TIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHG 177 (426)
T ss_dssp HHHHHHHHHHH---------------HTCC-E-EEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGT
T ss_pred HHHHHHHHHHh---------------hCCC-e-EEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccc
Confidence 777766 33 2444 3 3444555555555556655543 77788753
Q ss_pred -CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc--ccCCCC
Q 043646 213 -NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK--INLRSR 284 (625)
Q Consensus 213 -~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~--id~~~~ 284 (625)
++.+|+++|++++++....+++++|+++...+.||.+.+ +++|.++|++||+++|+|++++ ++... ..+...
T Consensus 178 ~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~ 257 (426)
T 1sff_A 178 ISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQM 257 (426)
T ss_dssp BCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGT
T ss_pred cchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhc
Confidence 124789999999973111135778887544333998777 9999999999999999999988 22211 111111
Q ss_pred CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHH-HHH
Q 043646 285 NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV-QMI 363 (625)
Q Consensus 285 ~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~-~~~ 363 (625)
+ ..+|++ |++|++++...+|++++++++ ++.+.+...+ ...+.+++. ..+
T Consensus 258 ~-~~~di~--s~sK~~~~GlriG~~~~~~~~--~~~l~~~~~~------------------------~~~~~~~~~~~a~ 308 (426)
T 1sff_A 258 G-VAPDLT--TFAKSIAGGFPLAGVTGRAEV--MDAVAPGGLG------------------------GTYAGNPIACVAA 308 (426)
T ss_dssp T-SCCSEE--EECGGGGTSSCCEEEEEEHHH--HTTSCTTSBC------------------------CSSSSCHHHHHHH
T ss_pred C-CCCCEE--EEcccccCCCceEEEEEcHHH--HhhhccCCcC------------------------cCCCCCHHHHHHH
Confidence 1 146766 556999842237999999887 3333321100 011122222 223
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC----CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCC
Q 043646 364 RAALAFWVKEYIGYEVIKKQEDVYIESALGRILP----NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLH 439 (625)
Q Consensus 364 ~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~----l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~ 439 (625)
.++++++. . +.+.++.+.+++++.+.|.+ ++.+....+ .+.++.+.+...... ....+.+
T Consensus 309 ~aal~~~~--~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-------~~~~~~~ 372 (426)
T 1sff_A 309 LEVLKVFE--Q---ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRG----LGAMIAIELFEDGDH-------NKPDAKL 372 (426)
T ss_dssp HHHHHHHH--H---TTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEE----ETTEEEEEEBGGGCT-------TSBCHHH
T ss_pred HHHHHHHH--h---cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE----EEEEEEEEEecCccc-------cCCChHH
Confidence 34555542 2 13455666677777776654 444433322 245555554321000 0000123
Q ss_pred hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 440 GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 440 ~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
..++.+.|.+ +||.+++|..+ ++++||++++.++++|+++++++|+++
T Consensus 373 ~~~l~~~l~~-~gi~v~~~~~~-------------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~ 420 (426)
T 1sff_A 373 TAEIVARARD-KGLILLSCGPY-------------------------------YNVLRILVPLTIEDAQIRQGLEIISQC 420 (426)
T ss_dssp HHHHHHHHHH-TTEECEEESTT-------------------------------SCEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCcEEecCCCC-------------------------------CCEEEEECCccCCHHHHHHHHHHHHHH
Confidence 4578888865 69999976532 388999999999999999999999998
Q ss_pred HHh
Q 043646 520 AAY 522 (625)
Q Consensus 520 ~~~ 522 (625)
+.+
T Consensus 421 l~~ 423 (426)
T 1sff_A 421 FDE 423 (426)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 176
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.88 E-value=5.9e-22 Score=211.87 Aligned_cols=207 Identities=13% Similarity=0.089 Sum_probs=146.5
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC------CCCcEEE--eCChHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG------QADAIIF--CGAGTT 150 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~------~~~~vif--t~sGtt 150 (625)
.|+|+.+..+..+.+.+++.+.... ..+.+ |....+ ..++|+.++++++.. ++ +|++ | +|++
T Consensus 37 ~~~d~~~~~~~~~~v~~a~~~~~~~-~~~~~---Y~~~~g----~~~lr~~ia~~~~~~~~~~~~~~-~i~~v~t-~G~~ 106 (401)
T 7aat_A 37 AYRDDNGKPYVLNCVRKAEAMIAAK-KMDKE---YLPIAG----LADFTRASAELALGENSEAFKSG-RYVTVQG-ISGT 106 (401)
T ss_dssp SCCCTTSCCCCCHHHHHHHHHHHHT-TCCCC---CCCTTC----CHHHHHHHHHHHHCTTCHHHHTT-CEEEEEE-EHHH
T ss_pred eEECCCCCEechHHHHHHHHHhccc-ccccC---CCCCCC----CHHHHHHHHHHhcCCCccccccC-ceEEEec-Ccch
Confidence 4788888888778888888766532 11221 111111 334666666666533 44 7876 8 7888
Q ss_pred HHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHh
Q 043646 151 AAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELY 228 (625)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~ 228 (625)
+++..++.++.. .+++||+ |+++.+.|..+...++..|++++.+|++. ++.+|++++++.+.+
T Consensus 107 ~al~~~~~~l~~------------~~~~gd~--Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~- 171 (401)
T 7aat_A 107 GSLRVGANFLQR------------FFKFSRD--VYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISK- 171 (401)
T ss_dssp HHHHHHHHHHHH------------HCTTCCE--EEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTT-
T ss_pred HHHHHHHHHHHH------------hccCCCE--EEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHh-
Confidence 888887765510 1367885 99999999999888999999999999853 678999999888874
Q ss_pred hhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCC-ccc--c---CCCC-CCCCCcEEEEcCCC
Q 043646 229 KAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY-VKI--N---LRSR-NIDGYDAIFLATHK 298 (625)
Q Consensus 229 ~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~-~~i--d---~~~~-~~~~~D~v~~S~hK 298 (625)
..++++++++++++||||.+.+ +++|+++|++||+++++|+++.... ... + +... ......+++.|++|
T Consensus 172 -~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK 250 (401)
T 7aat_A 172 -IPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAK 250 (401)
T ss_dssp -SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTT
T ss_pred -CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCc
Confidence 2357899999999999998766 7788999999999999999965322 211 1 1100 11244678899999
Q ss_pred CCCCCC-CceEEEE
Q 043646 299 FLGGPG-TPGILLI 311 (625)
Q Consensus 299 ~lggp~-g~G~l~v 311 (625)
.||.|+ .+|++++
T Consensus 251 ~~~~~G~RiG~l~~ 264 (401)
T 7aat_A 251 NMGLYGERAGAFTV 264 (401)
T ss_dssp TSCCGGGCEEEEEE
T ss_pred ccccccCceEEEEE
Confidence 997443 3799887
No 177
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.88 E-value=1.5e-20 Score=202.73 Aligned_cols=331 Identities=9% Similarity=0.038 Sum_probs=207.1
Q ss_pred eEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
..|+|..+. +..++.+.+++.+.+... .+... .+ ..+...++++++++++|. + +++|| +|+++
T Consensus 57 ~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~-~~~~~-~~-----~~~~~~~l~~~la~~~g~--~-~v~~~-~ggte 125 (420)
T 2pb2_A 57 KEYIDFAGGIAVTALGHCHPALVEALKSQGETL-WHTSN-VF-----TNEPALRLGRKLIDATFA--E-RVLFM-NSGTE 125 (420)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTC-CCCCT-TS-----CCHHHHHHHHHHHHHSSC--S-EEEEE-SSHHH
T ss_pred CEEEEccccccccccCCCCHHHHHHHHHHHHhc-ccccC-cc-----CCHHHHHHHHHHHhhCCC--C-eEEEe-CCHHH
Confidence 358887543 456789999999988643 22111 11 235677899999999983 3 79998 55556
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEc-CCCCchhHHHHHHcCCe------------EEEEecCCCCCCCH
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLG-PYEHHSNLLSWRQSLAE------------VVEIGLDDNGLLDI 218 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~-~~~h~s~~~~~~~~G~~------------vv~v~~~~~~~ld~ 218 (625)
++..++.++.... +. . -.+|+. .|++. +..|.+....+...|.+ ++.++.+ |+
T Consensus 126 A~~~al~~~~~~~----~~---~-~~~g~~-~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~ 191 (420)
T 2pb2_A 126 ANETAFKLARHYA----CV---R-HSPFKT-KIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFN-----DL 191 (420)
T ss_dssp HHHHHHHHHHHHH----HH---H-TCTTCC-EEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTT-----CH
T ss_pred HHHHHHHHHHHHh----hh---c-cCCCCC-EEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCC-----CH
Confidence 6666666541000 00 0 014542 25554 44555554445555543 5666643 89
Q ss_pred HHHHHHHHHhhhCCCCeEEEEecccCcccc----ccCHHHHHHHHHHcCCEEEEeccCc-CCCcc--ccCCCCCCCCCcE
Q 043646 219 EALRSQLELYKAAKRPMLGSFSACSNVTGI----YSDTRSIARLLHQYGGFACFDFAAS-GPYVK--INLRSRNIDGYDA 291 (625)
Q Consensus 219 ~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~----~~~l~~I~~la~~~g~~vivD~A~~-~g~~~--id~~~~~~~~~D~ 291 (625)
++|+++++ +++++|++++++|++|. ..++++|.++|++||+++|+|++++ ++... +.+...+. .+|+
T Consensus 192 ~~le~~i~-----~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~-~~di 265 (420)
T 2pb2_A 192 HAVKAVMD-----DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGV-TPDI 265 (420)
T ss_dssp HHHHHHCC-----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSE
T ss_pred HHHHHHhc-----cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCC-CCCe
Confidence 99999987 57999999999998886 3568999999999999999999985 22211 11111111 4688
Q ss_pred EEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHH
Q 043646 292 IFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWV 371 (625)
Q Consensus 292 v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~ 371 (625)
++ ++|+++++..+|++++++++ .+.+.+...+ .+ + .+++.....+.++++.+
T Consensus 266 it--~sK~l~~G~~iG~~~~~~~l--~~~l~~~~~~-~t---------------------~-~~~~~~~aa~~a~L~~~- 317 (420)
T 2pb2_A 266 LT--SAKALGGGFPVSAMLTTQEI--ASAFHVGSHG-ST---------------------Y-GGNPLACAVAGAAFDII- 317 (420)
T ss_dssp EE--ECGGGGTTSCCEEEEECHHH--HTTCC----C-CE---------------------E-CCCHHHHHHHHHHHHHH-
T ss_pred EE--ecccccCCCceEEEEEhHHH--HHhhcCCCcC-cc---------------------c-CcCHHHHHHHHHHHHHH-
Confidence 75 46999854458999999886 3344321100 00 0 12222222223344443
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHhhCCC----CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHh
Q 043646 372 KEYIGYEVIKKQEDVYIESALGRILPN----QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLF 447 (625)
Q Consensus 372 ~~~~g~~~i~~~~~~l~~~l~~~L~~l----~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L 447 (625)
+. +.+.++.+++++++.+.|.++ |.+....+ .+.++.+.+.... ..+..++.+.|
T Consensus 318 -~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~v~~~~~~-------------~~~~~~l~~~l 376 (420)
T 2pb2_A 318 -NT---PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRG----MGLLIGAELKPKY-------------KGRARDFLYAG 376 (420)
T ss_dssp -SS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE----ETTEEEEEECGGG-------------TTCHHHHHHHH
T ss_pred -Hh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe----cceEEEEEECCCc-------------hHHHHHHHHHH
Confidence 21 466778888888888888654 44432222 3455655443210 11356788888
Q ss_pred hhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 448 NDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 448 ~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.+ +||.++++. ++++||++++.++++|+++++++|++++++
T Consensus 377 ~~-~Gi~v~~~~---------------------------------~~~iRl~~~~~~t~eei~~~~~~l~~~l~~ 417 (420)
T 2pb2_A 377 AE-AGVMVLNAG---------------------------------ADVMRFAPSLVVEEADIHEGMQRFAQAVGK 417 (420)
T ss_dssp HH-TTEECEESS---------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HH-CCCEEEeCC---------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 66 799998641 378999999999999999999999998764
No 178
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.88 E-value=5.9e-22 Score=211.36 Aligned_cols=329 Identities=16% Similarity=0.132 Sum_probs=209.3
Q ss_pred EeccCCCCCcchHHHHHHHHH-hhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC-----CCC--cEEEeCChHH
Q 043646 79 TYADHTASGRSLRYIEDYIIN-NVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG-----QAD--AIIFCGAGTT 150 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~-~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~-----~~~--~vift~sGtt 150 (625)
.|+|..+.++.++.|.+++.+ .+... +...|....+ ..++++.++++++.. ..+ +|++| +|++
T Consensus 35 ~y~d~~~~~~~~~~v~~a~~~~~~~~~----~~~~y~~~~g----~~~lr~~la~~~~~~~~~~~~~~~~~i~~t-~g~~ 105 (397)
T 3fsl_A 35 LYYNEDGIIPQLQAVAEAEARLNAQPH----GASLYLPMEG----LNCYRHAIAPLLFGADHPVLKQQRVATIQT-LGGS 105 (397)
T ss_dssp CCCCTTSCCCCCHHHHHHHHHHHHSCC----CCCCCCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEEEEEE-SHHH
T ss_pred EEECCCCCccCcHHHHHHHHhhccCcc----ccccCCCCCc----hHHHHHHHHHHHhcCCcccccccceEEEEc-CCcH
Confidence 377877788888999999988 77531 1111111111 234666666666431 234 68898 7888
Q ss_pred HHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEec--CCCCCCCHHHHHHHHHHh
Q 043646 151 AAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGL--DDNGLLDIEALRSQLELY 228 (625)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~--~~~~~ld~~~L~~~l~~~ 228 (625)
+++..+++.+. .+++||+ |+++.+.|+++...++..|++++.++. +.++.+|+++|++++++.
T Consensus 106 ~a~~~~~~~~~-------------~~~~gd~--vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 170 (397)
T 3fsl_A 106 GALKVGADFLK-------------RYFPESG--VWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTL 170 (397)
T ss_dssp HHHHHHHHHHH-------------HHCTTCC--EEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTC
T ss_pred HHHHHHHHHHH-------------hcCCCCe--EEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhC
Confidence 88888854432 1468886 999999999998889999999999998 346789999999999731
Q ss_pred hhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCcc-----ccCCCC-CCCCCcEEEEcCCCC
Q 043646 229 KAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVK-----INLRSR-NIDGYDAIFLATHKF 299 (625)
Q Consensus 229 ~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~-----id~~~~-~~~~~D~v~~S~hK~ 299 (625)
.++++++++++++||||.+.+ +++|+++|++||+++|+|++++..... ..+... ......+++.|++|.
T Consensus 171 --~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 248 (397)
T 3fsl_A 171 --QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKI 248 (397)
T ss_dssp --CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTT
T ss_pred --CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEeccccc
Confidence 246889999999999999966 558999999999999999997754322 111111 112445778899999
Q ss_pred CCCCC-CceEEEEec---cccccCCCCCcccCCceEEeeccccccccccccchhh--hhcCCChh-HHHHHH-HHHHHH-
Q 043646 300 LGGPG-TPGILLISK---ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEE--RENGGTPQ-IVQMIR-AALAFW- 370 (625)
Q Consensus 300 lggp~-g~G~l~v~~---~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~--~~~~gt~~-~~~~~~-aal~~~- 370 (625)
+|.|+ ++|++++.. +.. ..+ ...... +...++++ +.+.+. +++.-.
T Consensus 249 ~~~~G~riG~~~~~~~~~~~~--~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 303 (397)
T 3fsl_A 249 FSLYGERVGGLSVMCEDAEAA--GRV-----------------------LGQLKATVRRNYSSPPNFGAQVVAAVLNDEA 303 (397)
T ss_dssp TTCGGGCCEEEEEECSSHHHH--HHH-----------------------HHHHHHHHHTTTSSCCSHHHHHHHHHHTSHH
T ss_pred ccCcCCCeeEEEEecCCHHHH--HHH-----------------------HHHHHHHHHhccCCCCHHHHHHHHHHhcCHH
Confidence 97332 379987632 221 000 000000 11122222 222221 111100
Q ss_pred HHh--hcCHHHHHHHHHHHHHHHHHhhCCCC---cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHH
Q 043646 371 VKE--YIGYEVIKKQEDVYIESALGRILPNQ---NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVAT 445 (625)
Q Consensus 371 ~~~--~~g~~~i~~~~~~l~~~l~~~L~~l~---gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 445 (625)
+.. ....+.+.++.+++++++.+.|.+++ ++++..+ ..+++.|.-. +...+.+
T Consensus 304 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~~~~~~~~~------------------~~~~~~~ 361 (397)
T 3fsl_A 304 LKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLN----QRGMFSYTGL------------------SAAQVDR 361 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHHH----CCSSEEECCC------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeecC----CceEEEecCC------------------CHHHHHH
Confidence 000 12345677788888889999887653 5554443 2344444322 2445655
Q ss_pred HhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 446 LFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 446 ~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
.| +++||.+++| + ||+++.. +++++++++++|+++
T Consensus 362 ~l-~~~gi~v~~g-----------------------------------~--Ris~~~~-~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 362 LR-EEFGVYLIAS-----------------------------------G--RMCVAGL-NTANVQRVAKAFAAV 396 (397)
T ss_dssp HH-HTTCEECCTT-----------------------------------C--EEEGGGC-CTTTHHHHHHHHHHH
T ss_pred HH-HhCCEEECCC-----------------------------------C--eEEEEec-CHhhHHHHHHHHHhh
Confidence 55 5689999742 3 9999744 557799999999875
No 179
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.88 E-value=2.3e-21 Score=208.22 Aligned_cols=334 Identities=10% Similarity=-0.036 Sum_probs=203.1
Q ss_pred eccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHH
Q 043646 80 YADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEV 159 (625)
Q Consensus 80 Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~ 159 (625)
|+|+.+..+.++.+.+++.+.... +...|....+..++.+++.+++.+..+.+..++|++| +|+++++..++.+
T Consensus 47 ~~~~~~~~~~~~~v~~a~~~~~~~-----~~~~Y~~~~g~~~lr~~la~~~~~~~~~~~~~~i~~t-~g~~~al~~~~~~ 120 (413)
T 3t18_A 47 LLDDKGKIIALPSVYDRLDEMDRS-----HIASYAPIEGEKDYRKIVIDTLFGPYKPEGYISAIAT-PGGTGAIRSAIFS 120 (413)
T ss_dssp CBCTTSCBCCCHHHHHHHHHSCHH-----HHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEE-SHHHHHHHHHHHH
T ss_pred ccCCCCCcCChHHHHHHHHhcCcc-----cccCcCCCCCCHHHHHHHHHHHhcccCccccCcEEEc-CccHHHHHHHHHH
Confidence 566666777888998888653210 0001111112334445555555444443322278998 7899999998887
Q ss_pred hcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecC-CCCCCCHHHHHHHHHHhhhCCCCe-EE
Q 043646 160 MGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLD-DNGLLDIEALRSQLELYKAAKRPM-LG 237 (625)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~-~~~~ld~~~L~~~l~~~~~~~~~~-lv 237 (625)
+ +++||+ |+++.+.|+++...++..|++++.++++ .++.+|+++|++++++... ++++ ++
T Consensus 121 ~---------------~~~gd~--Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~-~~~~~~v 182 (413)
T 3t18_A 121 Y---------------LDEGDP--LICHDYYWAPYRKICEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIR-DSDRIAS 182 (413)
T ss_dssp H---------------CCSSCE--EEEESSCCTHHHHHHHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHH-HCSEEEE
T ss_pred h---------------cCCCCE--EEECCCCcccHHHHHHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhh-cCCCEEE
Confidence 7 578886 8899999999988889999999999984 4568999999999974111 1566 88
Q ss_pred EEecc-cCccccccCHHHHH---HHHH------HcCCEEEEeccCcC-CCccc---cC-CCCCCCCCc---EEEEcCCCC
Q 043646 238 SFSAC-SNVTGIYSDTRSIA---RLLH------QYGGFACFDFAASG-PYVKI---NL-RSRNIDGYD---AIFLATHKF 299 (625)
Q Consensus 238 ~~~~~-~n~TG~~~~l~~I~---~la~------~~g~~vivD~A~~~-g~~~i---d~-~~~~~~~~D---~v~~S~hK~ 299 (625)
++++| +||||.+.|.+++. ++|+ +||+++|+|++++. ++... .+ .....-..+ +++.|++|.
T Consensus 183 i~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~ 262 (413)
T 3t18_A 183 LINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVVVAFSMSKS 262 (413)
T ss_dssp EEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEEEEEEEHHHH
T ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeEEEEEecCcc
Confidence 88998 99999998876555 5555 89999999999642 11110 11 000000123 677799999
Q ss_pred CCCCC-CceEEEE---eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh--
Q 043646 300 LGGPG-TPGILLI---SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE-- 373 (625)
Q Consensus 300 lggp~-g~G~l~v---~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~-- 373 (625)
+|.|+ .+|++++ ++++.. .+.... ....+....+++..+...+ ..++...
T Consensus 263 ~~~~G~riG~~~~~~~~~~~~~--~~~~~~---------------------~~~~~~~~~~~~~~~~~a~-~~~l~~~~~ 318 (413)
T 3t18_A 263 HTAYGLRSGAAVGISSSKEIIE--EFEASL---------------------AHSARCNWSNGTHAAQNIL-IELERAENK 318 (413)
T ss_dssp TTCGGGCCEEEEEEESCHHHHH--HHHHHH---------------------HHHHHHHTSSCCHHHHHHH-HHTTSHHHH
T ss_pred CCCcCcCcEEEEEecCCHHHHH--HHHHHH---------------------HHhhhccccCCChHHHHHH-HHHhcChHH
Confidence 98443 3799998 666521 110000 0000001122333322111 1111000
Q ss_pred ---hcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhh
Q 043646 374 ---YIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDL 450 (625)
Q Consensus 374 ---~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~ 450 (625)
....+.++++.+.+++++.+.|.++ ++++..+. ++.+.|.-.. +..++.+.| .+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~----~~~~~~~~~~-----------------~~~~~~~~l-~~ 375 (413)
T 3t18_A 319 KIYEQELVDLRNMLKSRADVFVTAAKEN-KLTMIPYF----GGFFTFIPTD-----------------KAFDIVKDL-EK 375 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCCC----SSSCEEEECS-----------------CHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCccCCC----ceEEEEeCCC-----------------CHHHHHHHH-Hh
Confidence 0113355667777788888888876 77766542 3444443221 256788888 45
Q ss_pred cCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 451 FGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 451 ~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+||.+++| ++++||+++..++++. ++.|.+++.+
T Consensus 376 ~gv~v~~g----------------------------------~~~iRis~~~~~~~~~----l~~l~~~l~~ 409 (413)
T 3t18_A 376 ENIFTIPS----------------------------------AKGIRVAICGVGEEKI----PKLVQRLAFY 409 (413)
T ss_dssp TTEECEEC----------------------------------SSEEEECTTTSCGGGH----HHHHHHHHHH
T ss_pred CCEEEecC----------------------------------CCceEEEEeeCCHHHH----HHHHHHHHHH
Confidence 79999865 2789999985555444 5555544443
No 180
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.88 E-value=1.4e-20 Score=201.22 Aligned_cols=330 Identities=11% Similarity=0.037 Sum_probs=203.7
Q ss_pred eEeccCCCCC------cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTASG------RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~~------~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
..|+|+.++. ..++.+.+++.+.+......+.. + ......++++++++++|.+ +++|| +|+++
T Consensus 39 ~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~--~-----~~~~~~~l~~~la~~~~~~---~v~~~-~gg~~ 107 (406)
T 4adb_A 39 KEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNG--Y-----TNEPVLRLAKKLIDATFAD---RVFFC-NSGAE 107 (406)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTT--S-----CCHHHHHHHHHHHHHSSCS---EEEEE-SSHHH
T ss_pred CEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCC--c-----CCHHHHHHHHHHHhhCCCC---eEEEe-CcHHH
Confidence 3488876653 33789999999888653322211 1 1245678999999999864 78998 56666
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCC-CceEEEEcCCCCchhHHHHHHcC------------CeEEEEecCCCCCCCH
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDE-ERWVVFLGPYEHHSNLLSWRQSL------------AEVVEIGLDDNGLLDI 218 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~h~s~~~~~~~~G------------~~vv~v~~~~~~~ld~ 218 (625)
++..++.++... ....-.+| ++ +|+..+..|.+........+ ..+..++. .|+
T Consensus 108 a~~~al~~~~~~--------~~~~~~~g~~~-vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~ 173 (406)
T 4adb_A 108 ANEAALKLARKF--------AHDRYGSHKSG-IVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-----NDI 173 (406)
T ss_dssp HHHHHHHHHHHH--------HHHHTCTTCCE-EEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-----TCH
T ss_pred HHHHHHHHHHHH--------HHhcCCCCCcE-EEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-----CcH
Confidence 666666654100 00000144 43 44444444444443333333 34555554 389
Q ss_pred HHHHHHHHHhhhCCCCeEEEEecccCcccccc-----CHHHHHHHHHHcCCEEEEeccCc-CCCcc--ccCCCCCCCCCc
Q 043646 219 EALRSQLELYKAAKRPMLGSFSACSNVTGIYS-----DTRSIARLLHQYGGFACFDFAAS-GPYVK--INLRSRNIDGYD 290 (625)
Q Consensus 219 ~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~-----~l~~I~~la~~~g~~vivD~A~~-~g~~~--id~~~~~~~~~D 290 (625)
++|+++++ +++++|+++ ++|+||.+. ++++|.++|++||+++|+|++++ ++... ......+. ..|
T Consensus 174 ~~l~~~l~-----~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~d 246 (406)
T 4adb_A 174 NSASALID-----DSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGV-TPD 246 (406)
T ss_dssp HHHHTTCS-----TTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC-CCS
T ss_pred HHHHHHhc-----CCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCC-CCC
Confidence 99999887 579999999 889998664 58999999999999999999986 22211 11111111 468
Q ss_pred EEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHH-HHHHHHHH
Q 043646 291 AIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQ-MIRAALAF 369 (625)
Q Consensus 291 ~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~-~~~aal~~ 369 (625)
++++ +|++++...+|++++++++. +.+.+...++ ..+.+++.. .+.++++.
T Consensus 247 ~~t~--sK~~~~G~r~G~~~~~~~~~--~~~~~~~~~~------------------------~~~~~~~~~~a~~~~l~~ 298 (406)
T 4adb_A 247 LLTT--AKALGGGFPVGALLATEECA--RVMTVGTHGT------------------------TYGGNPLASAVAGKVLEL 298 (406)
T ss_dssp EEEE--CGGGGTTSCCEEEEECHHHH--HTCCTTSSCC------------------------SSTTCHHHHHHHHHHHHH
T ss_pred EEEe--chhhcCCCCeEEEEEcHHHH--hhhccCCcCC------------------------CCCCCHHHHHHHHHHHHH
Confidence 7755 89998333589999998873 3333322110 011122222 12233333
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHhhCCC----CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHH
Q 043646 370 WVKEYIGYEVIKKQEDVYIESALGRILPN----QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVAT 445 (625)
Q Consensus 370 ~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 445 (625)
+ + .+.+.++.+++++++.+.|.++ +.+.-.. ..+.++.+.+.... ..+..++.+
T Consensus 299 ~--~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~----~~g~~~~~~~~~~~-------------~~~~~~~~~ 356 (406)
T 4adb_A 299 I--N---TPEMLNGVKQRHDWFVERLNTINHRYGLFSEVR----GLGLLIGCVLNADY-------------AGQAKQISQ 356 (406)
T ss_dssp H--S---SHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE----EETTEEEEEECTTT-------------TTCHHHHHH
T ss_pred H--H---hcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEE----EEEEEEEEEEeCCc-------------HHHHHHHHH
Confidence 2 1 2567778888888888888654 1121111 12345555543211 113568888
Q ss_pred HhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 446 LFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 446 ~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.|.+ +||.++++. ++++|+++++.++++|+++++++|++++.+.
T Consensus 357 ~l~~-~gi~v~~~~---------------------------------~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~ 400 (406)
T 4adb_A 357 EAAK-AGVMVLIAG---------------------------------GNVVRFAPALNVSEEEVTTGLDRFAAACEHF 400 (406)
T ss_dssp HHHH-TTEECEESS---------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-CCcEEeecC---------------------------------CCeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8866 599998542 3889999999999999999999999988764
No 181
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.88 E-value=7.9e-22 Score=212.55 Aligned_cols=332 Identities=16% Similarity=0.139 Sum_probs=210.1
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC-----CCC--cEEEeCChHHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG-----QAD--AIIFCGAGTTA 151 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~-----~~~--~vift~sGtta 151 (625)
+|+|....++.++.|.+++.+.+... ....|....+ ..++++.++++++.. ..+ +|++| +|+++
T Consensus 58 ~y~d~~~~~~~~~~v~~a~~~~~~~~----~~~~Y~~~~g----~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t-~G~t~ 128 (420)
T 4f4e_A 58 VYTNEDGKIPLLRAVRDAEKARVEAG----LPRGYLPIDG----IAAYDASVQKLLLGDDSPLIAAGRVVTAQA-LGGTG 128 (420)
T ss_dssp SCCCTTSCCCCCHHHHHHHHHHHHTC----CCCCCCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEEEEEE-EHHHH
T ss_pred eeECCCCCccCcHHHHHHHHHHhccC----CCCCCCCCCC----cHHHHHHHHHHhcCCCccccccCceEEEEC-CccHH
Confidence 47777788888899999998877531 1111111112 234555566555331 233 68898 78888
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEec--CCCCCCCHHHHHHHHHHhh
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGL--DDNGLLDIEALRSQLELYK 229 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~--~~~~~ld~~~L~~~l~~~~ 229 (625)
++..++..+. .+++||+ |+++.+.|+++...++..|++++.++. +.++.+|+++|++++++.
T Consensus 129 al~~~~~~~~-------------~~~~gd~--Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~- 192 (420)
T 4f4e_A 129 ALKIGADFLR-------------TLNPKAK--VAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGY- 192 (420)
T ss_dssp HHHHHHHHHH-------------HHCTTCC--EEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTC-
T ss_pred HHHHHHHHHH-------------HhCCCCE--EEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhC-
Confidence 8988854332 1478886 999999999998889999999999998 346789999999999731
Q ss_pred hCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCcc-----ccCCCC-CCCCCcEEEEcCCCCC
Q 043646 230 AAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVK-----INLRSR-NIDGYDAIFLATHKFL 300 (625)
Q Consensus 230 ~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~-----id~~~~-~~~~~D~v~~S~hK~l 300 (625)
.++++++++++++||||.+.+ +++|+++|++||+++++|++++..... ..+... ...+.++++.|++|.|
T Consensus 193 -~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 271 (420)
T 4f4e_A 193 -EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSF 271 (420)
T ss_dssp -CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTT
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccC
Confidence 246899999999999999966 568899999999999999997643321 111111 1124568888999999
Q ss_pred CCCC-CceEEEEe---ccccccCCCCCcccCCceEEeeccccccccccccchhhhhcC-CChhHHHHHH-HHHHHH-HHh
Q 043646 301 GGPG-TPGILLIS---KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENG-GTPQIVQMIR-AALAFW-VKE 373 (625)
Q Consensus 301 ggp~-g~G~l~v~---~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~-gt~~~~~~~~-aal~~~-~~~ 373 (625)
|.|+ .+|++++. ++.. ..+ . ..... ..+... +.+.+.+.+. +++.-. +.+
T Consensus 272 ~~~G~RiG~~~~~~~~~~~~--~~~---~-----------------~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 328 (420)
T 4f4e_A 272 SLYGERVGALSIITDSKDEA--ARV---L-----------------SQLKR-VIRTNYSNPPTHGGAIVAAVLASPELRA 328 (420)
T ss_dssp TCGGGCEEEEEEECSSHHHH--HHH---H-----------------HHHHH-HHHTTTSSCCSHHHHHHHHHHHCHHHHH
T ss_pred cCcCCCcEEEEEEcCCHHHH--HHH---H-----------------HHHHH-HHhcccCCCCHHHHHHHHHHhcCHHHHH
Confidence 8332 37988752 2221 000 0 00000 001111 2233333221 111110 000
Q ss_pred --hcCHHHHHHHHHHHHHHHHHhhCCC---CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhh
Q 043646 374 --YIGYEVIKKQEDVYIESALGRILPN---QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFN 448 (625)
Q Consensus 374 --~~g~~~i~~~~~~l~~~l~~~L~~l---~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~ 448 (625)
....+.++++.+++++++.+.|.++ +++.+..+ ..+.+.|.-. +...+.+.|
T Consensus 329 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~g~~~~~~~------------------~~~~~~~~l- 385 (420)
T 4f4e_A 329 SWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFINA----QRGMFSYSGL------------------TSAQVDRLR- 385 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHH----SCSSEEECCC------------------CHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeECC----CccEEEEeCC------------------CHHHHHHHH-
Confidence 1224567778888889999998876 35555444 2345544322 244565555
Q ss_pred hhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 449 DLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 449 ~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
+++||.++++ + |||++. .+++++++++++|++++
T Consensus 386 ~~~gI~v~~~-----------------------------------~--Ris~~~-~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 386 EEFGIYAVST-----------------------------------G--RICVAA-LNTRNLDVVANAIAAVL 419 (420)
T ss_dssp HHHCEECCTT-----------------------------------S--EEEGGG-CCTTTHHHHHHHHHHHH
T ss_pred HhCCEEecCC-----------------------------------C--eEEEec-CCHHHHHHHHHHHHHHh
Confidence 5689998732 2 999974 36677999999999875
No 182
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.88 E-value=1.4e-21 Score=207.37 Aligned_cols=177 Identities=16% Similarity=0.104 Sum_probs=130.6
Q ss_pred CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccccc
Q 043646 86 SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVP 165 (625)
Q Consensus 86 ~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~ 165 (625)
.++.++.|.+++. .+.+| ..+.+++++.+++++|++++++++++ +|+++++..++.+
T Consensus 39 ~~~~~~~v~~a~~-----~~~~~-----------~~~~~~~~~~~a~~~g~~~~~~~~~~-~ggt~a~~~~~~~------ 95 (374)
T 2aeu_A 39 GFLIDEKDKALLN-----TYIGS-----------SYFAEKVNEYGLKHLGGDENDKCVGF-NRTSSAILATILA------ 95 (374)
T ss_dssp CCCCCHHHHHHHT-----STTHH-----------HHHHHHHHHHHHHHHTCCTTEEEEEE-SSHHHHHHHHHHH------
T ss_pred CCCCCHHHHHHHH-----HhcCc-----------hHHHHHHHHHHHHHhCCCCcceEEEE-cChHHHHHHHHHh------
Confidence 4577888888874 11111 22346677788899998532378888 5566667776654
Q ss_pred chhhhhhhhccCCCCceEEEEcCCCCchhH---HHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeE-EEEec
Q 043646 166 SIMRDKLITSLRDEERWVVFLGPYEHHSNL---LSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPML-GSFSA 241 (625)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~---~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~l-v~~~~ 241 (625)
+ +||+ |+++.+.|++.. ..++..|++++.+ .|+++|+++ + +++++ |++++
T Consensus 96 ----------~-~gd~--Vl~~~~~y~~~~~~~~~~~~~g~~~~~v-------~d~~~l~~~-~-----~~~~~~v~~~~ 149 (374)
T 2aeu_A 96 ----------L-KPKK--VIHYLPELPGHPSIERSCKIVNAKYFES-------DKVGEILNK-I-----DKDTLVIITGS 149 (374)
T ss_dssp ----------H-CCSE--EEEECSSSSCCTHHHHHHHHTTCEEEEE-------SCHHHHHTT-C-----CTTEEEEEECB
T ss_pred ----------C-CCCE--EEEecCCCCccHHHHHHHHHcCcEEEEe-------CCHHHHHhc-C-----CCccEEEEEcc
Confidence 4 6775 888877555433 3556679999888 278888877 4 68999 99999
Q ss_pred ccCccc-cccCHHHHHHHHHHcCCEEEEeccCcCCCc-cc-c--CCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 242 CSNVTG-IYSDTRSIARLLHQYGGFACFDFAASGPYV-KI-N--LRSRNIDGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 242 ~~n~TG-~~~~l~~I~~la~~~g~~vivD~A~~~g~~-~i-d--~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
++|||| ...++++|.++|++||+++|+|++++.+.. +. . ...+ ++|+++.|+||+++|| ++|++++++++
T Consensus 150 p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~---~~di~~~S~sK~l~g~-~~G~~~~~~~~ 224 (374)
T 2aeu_A 150 TMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKL---GADLVVTSTDKLMEGP-RGGLLAGKKEL 224 (374)
T ss_dssp CTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHH---TCSEEEEETTSSSSSC-SCEEEEEEHHH
T ss_pred CCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCcccc---CCcEEEecCcccccCc-ceEEEEECHHH
Confidence 999999 889999999999999999999999875431 11 0 1112 6799999999999877 56999999877
No 183
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.87 E-value=1.2e-21 Score=206.04 Aligned_cols=295 Identities=13% Similarity=0.108 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH--HH
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL--SW 198 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~--~~ 198 (625)
....++++++++++|.+. .+++++|+. ++..++.++ +.+||+.+|++++..|++... ..
T Consensus 48 ~~~~~l~~~la~~~~~~~---~i~~~~g~~-a~~~a~~~~---------------~~~g~~~vvi~~~~~~~~~~~~~~~ 108 (359)
T 3pj0_A 48 AVIEDFETKIAKILGKQS---AVFFPSGTM-AQQIALRIW---------------ADRKENRRVAYHPLSHLEIHEQDGL 108 (359)
T ss_dssp HHHHHHHHHHHHHHTCSE---EEEESCHHH-HHHHHHHHH---------------HHHHTCCEEEECTTCHHHHSSTTHH
T ss_pred HHHHHHHHHHHHHhCCCc---EEEeCCHHH-HHHHHHHHH---------------HhcCCCcEEEEeccceeeehhcchH
Confidence 356789999999999853 255556665 566665555 245564457777777765432 22
Q ss_pred -HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcc-ccccCHHHH---HHHHHHcCCEEEEeccCc
Q 043646 199 -RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVT-GIYSDTRSI---ARLLHQYGGFACFDFAAS 273 (625)
Q Consensus 199 -~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~T-G~~~~l~~I---~~la~~~g~~vivD~A~~ 273 (625)
...|++++.++. .++.+|+++|+++ . +++++|++++++|++ |.+.|.++| +++|++||+++|+|+++.
T Consensus 109 ~~~~g~~~~~v~~-~~~~~d~~~l~~~-~-----~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~ 181 (359)
T 3pj0_A 109 KELQQITPLLLGT-ANQLLTIDDIKSL-R-----EPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARL 181 (359)
T ss_dssp HHHHCCEEEECSC-TTSCCCHHHHHTC-S-----SCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTC
T ss_pred HHhcCceEEecCC-cCCCcCHHHHHhc-c-----CCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcch
Confidence 456999999887 4678999999887 3 689999999999998 788886555 999999999999999876
Q ss_pred CCCc---cccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhh
Q 043646 274 GPYV---KINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEE 350 (625)
Q Consensus 274 ~g~~---~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~ 350 (625)
.+.. ......+. .++|++++|+||++++|.| |+++.++++.+ .+... ..
T Consensus 182 ~~~~~~~~~~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~--~~~~~------------------------~~ 233 (359)
T 3pj0_A 182 WEITPFYQKSAEEIC-ALFDSVYVSFYKGIGGIAG-AILAGNDDFVQ--EAKIW------------------------KR 233 (359)
T ss_dssp GGGHHHHTCCHHHHH-TTCSEEEEESSSTTCCSSC-EEEEECHHHHH--HHHHH------------------------HH
T ss_pred hcchhhhCCCHHHhh-ccCCEEEEeccccCCCcce-EEEECCHHHHH--HHHHH------------------------HH
Confidence 4321 11111111 2679999999999998877 88888877732 11100 00
Q ss_pred hhcCCC--hhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEe-CCCCCCCcceEEEEeccCCCCCC
Q 043646 351 RENGGT--PQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVL-GNTSVKRQAILSFLVYSTTNSSP 427 (625)
Q Consensus 351 ~~~~gt--~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~-~~~~~~~~~i~~f~~~~~~~~~~ 427 (625)
.+..++ .+..+ .+++..+ .+. .+.+ ++...+++++.+.|.++|++++. .+. ....+.+.+....
T Consensus 234 ~~~~~~~~~~~~~--~a~~~~l-~~~--~~~~-~~~~~~~~~l~~~L~~~~g~~~~~~~~---~~~~~~~~~~~~~---- 300 (359)
T 3pj0_A 234 RYGGDLISLYPYI--LSADYYF-EKR--IGKM-AEYFEAAKGLAERFNSCSGVKTVPEVP---VSNMFHVYFENSA---- 300 (359)
T ss_dssp HTTCCCSCCHHHH--HHHHHHH-HHH--GGGH-HHHHHHHHHHHHHHHTSTTEEEESSSC---SSSEEEEEESSCH----
T ss_pred HhCCCcchhHHHH--HHHHHHH-HHH--HHHh-HHHHHHHHHHHHHHhhCCCceeeccCC---cceEEEEEecCcc----
Confidence 000111 12222 1122111 111 1223 34566788899999999999986 332 2334433332110
Q ss_pred ccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCC---CC
Q 043646 428 ENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPY---YM 504 (625)
Q Consensus 428 ~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~---~~ 504 (625)
..+..++.+.|.+ +||.+++|..+..+ ..+++|++++. ..
T Consensus 301 ---------~~~~~~l~~~l~~-~GV~v~~g~~~~~~---------------------------~~~~~r~~i~~~~~~~ 343 (359)
T 3pj0_A 301 ---------DEIGAILTKIQDE-TGVGISGYLQEKSA---------------------------DVCAFEVSVGDAFAEI 343 (359)
T ss_dssp ---------HHHHHHHHHHHHH-HCEECCSCCEEEET---------------------------TEEEEEEECCTTGGGS
T ss_pred ---------chhHHHHHHHHHh-cCcEecCCccccCC---------------------------CceEEEEEecCccccC
Confidence 0124577888854 79999988655311 13789999863 35
Q ss_pred CHHHHHHHHHHHHHH
Q 043646 505 SNEEFEFILAALEFI 519 (625)
Q Consensus 505 t~edid~ll~aL~~~ 519 (625)
+.++++..++.|.+.
T Consensus 344 ~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 344 PAKNLELVFRCLEKE 358 (359)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 788888888877654
No 184
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.87 E-value=4.3e-21 Score=208.68 Aligned_cols=330 Identities=10% Similarity=0.031 Sum_probs=208.9
Q ss_pred EeccCCCCCcchHHHHHHHHHhhC-CCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh-CCCC----CCcEEE--eCChHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVL-PFYGNTHTSDSYVGQRMTKMVHEASNYIKRCL-GGGQ----ADAIIF--CGAGTT 150 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~-~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~-g~~~----~~~vif--t~sGtt 150 (625)
.|+|+.+..+..+.+.+++.+... ....+.. |....+ ..++++.+++++ |.+. +++|++ | +|++
T Consensus 58 ~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~---Y~~~~G----~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t-~ggt 129 (448)
T 3meb_A 58 AYRDESGKPWILPAVKEAEAIISSDLSKYNKE---YPPVAG----FPLFLEAAQFLMFGKDSKAAQEGRIASCQS-LSGT 129 (448)
T ss_dssp CCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCS---CCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEEEEEE-SHHH
T ss_pred cccCCCCCEechHHHHHHHHHHhhcccCCCCC---CCCCcc----hHHHHHHHHHHhcCCCccccCcCcEEEEEC-CcHH
Confidence 588998888888899988655431 1111211 111111 345777777776 7762 237998 9 6778
Q ss_pred HHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH----HcCCeEEEEec-CCC--CCCCHHHHHH
Q 043646 151 AAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR----QSLAEVVEIGL-DDN--GLLDIEALRS 223 (625)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~----~~G~~vv~v~~-~~~--~~ld~~~L~~ 223 (625)
+++..++..+. .+.+||+ |+++.++|+++...++ ..|++++.++. +.+ +.+|+++|++
T Consensus 130 ~al~l~~~~~~-------------~~~~gd~--Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~ 194 (448)
T 3meb_A 130 GSLHIGFEFLH-------------LWMPKAE--FYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKK 194 (448)
T ss_dssp HHHHHHHHHHH-------------HHCTTCC--EEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHH
T ss_pred HHHHHHHHHHH-------------HhCCCCE--EEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHH
Confidence 77876443221 1468886 9999999999988888 88999999998 554 7899999999
Q ss_pred HHHHhhhCCCCeEEEEecccCccccccCH---HHHHHHHHHcCCEEEEeccCcC-CCcccc-----CCCC-CCCCCcEEE
Q 043646 224 QLELYKAAKRPMLGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASG-PYVKIN-----LRSR-NIDGYDAIF 293 (625)
Q Consensus 224 ~l~~~~~~~~~~lv~~~~~~n~TG~~~~l---~~I~~la~~~g~~vivD~A~~~-g~~~id-----~~~~-~~~~~D~v~ 293 (625)
++++. .++++++++++++||||.+.+. ++|+++|++||+++++|+++.. ++...+ +..+ ....-.+++
T Consensus 195 ~l~~~--~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (448)
T 3meb_A 195 DIQSA--PEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVA 272 (448)
T ss_dssp HHHHS--CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEE
T ss_pred HHHhC--CCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEE
Confidence 99841 1357899999999999999875 5599999999999999999653 222211 1110 011224667
Q ss_pred EcCCCCCCCCC-CceEE--EE--------ec-----cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCCh
Q 043646 294 LATHKFLGGPG-TPGIL--LI--------SK-----ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTP 357 (625)
Q Consensus 294 ~S~hK~lggp~-g~G~l--~v--------~~-----~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~ 357 (625)
.|+||.||.|+ .+|++ ++ .+ .+. ..+ .. ..+....++
T Consensus 273 ~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~--~~l------------------------~~-~~~~~~~~~ 325 (448)
T 3meb_A 273 QSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMV--SGM------------------------TL-QIRKTWSMS 325 (448)
T ss_dssp EECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHH--HHH------------------------HH-HHHTTTSSC
T ss_pred ecccccCCCccccceeeeeeeccccccccCCHHHHHHHH--HHH------------------------HH-HHhcccCCc
Confidence 89999998443 37887 55 32 220 000 00 011122233
Q ss_pred hHHHHHHHHHHHHHHhh-------cCHHHHHHHHHHHHHHHHHhhCCC--Cc------EEEeCCCCCCCcceEEEEeccC
Q 043646 358 QIVQMIRAALAFWVKEY-------IGYEVIKKQEDVYIESALGRILPN--QN------IQVLGNTSVKRQAILSFLVYST 422 (625)
Q Consensus 358 ~~~~~~~aal~~~~~~~-------~g~~~i~~~~~~l~~~l~~~L~~l--~g------v~v~~~~~~~~~~i~~f~~~~~ 422 (625)
+..+...+ ..++ ... ...+.++++.+.+++++.+.|.++ ++ +.+..+ ..+.+.|.-.
T Consensus 326 ~~~~~~a~-~~~l-~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~-- 397 (448)
T 3meb_A 326 AIHGAYIV-QVIV-HDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILT----AIGMFTFTGL-- 397 (448)
T ss_dssp CHHHHHHH-HHHH-TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHH----CCSSEEECCC--
T ss_pred cHHHHHHH-HHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCC----CceEEEecCC--
Confidence 33332111 1111 110 124567778888889999998765 44 333322 2344444322
Q ss_pred CCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCC
Q 043646 423 TNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPY 502 (625)
Q Consensus 423 ~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~ 502 (625)
.. +++..|.+++||.+.+|. + |||++.
T Consensus 398 ----------------~~-~~~~~ll~~~gV~v~~G~----------------------------------g--Ris~a~ 424 (448)
T 3meb_A 398 ----------------TP-EHVDYLKEKWSIYLVKAG----------------------------------G--RMSMCG 424 (448)
T ss_dssp ----------------CH-HHHHHHHHHHCEEECSGG----------------------------------G--EEEGGG
T ss_pred ----------------CH-HHHHHHHHhCCEEEeCCC----------------------------------c--EEEEec
Confidence 22 455666577899997542 2 999964
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q 043646 503 YMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 503 ~~t~edid~ll~aL~~~~~~ 522 (625)
. +++++++++++|++++..
T Consensus 425 ~-~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 425 L-TESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp C-CTTTHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHh
Confidence 3 556799999999998863
No 185
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.87 E-value=5.1e-22 Score=213.27 Aligned_cols=326 Identities=12% Similarity=0.071 Sum_probs=208.9
Q ss_pred EeccCCCCCcchHHHHHHHHH-hhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC------CCCCcEEE--eCChH
Q 043646 79 TYADHTASGRSLRYIEDYIIN-NVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG------GQADAIIF--CGAGT 149 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~-~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~------~~~~~vif--t~sGt 149 (625)
.|+|+.+..++++.+.+++.+ .+.. +....|.... ...++++.++++++. +++ +|++ | +|+
T Consensus 38 ~~~d~~~~~~~~~~v~~a~~~~~~~~----~~~~~y~~~~----g~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~t-~g~ 107 (412)
T 1yaa_A 38 AYRDDNGKPWVLPSVKAAEKLIHNDS----SYNHEYLGIT----GLPSLTSNAAKIIFGTQSDALQED-RVISVQS-LSG 107 (412)
T ss_dssp CCBCTTSCBCCCHHHHHHHHHHHTCT----TCCCCCCCTT----CCHHHHHHHHHHHHCTTCHHHHTT-CEEEEEE-EHH
T ss_pred eeeCCCCCCCCcHHHHHHHHhhhcCc----ccccCCCCCC----CcHHHHHHHHHHHhcCCCCCCCcc-eEEEEec-cch
Confidence 477887777888999999988 6641 1111111111 134566777776632 344 7988 8 788
Q ss_pred HHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEec-CC-CCCCCHHHHHHHHHH
Q 043646 150 TAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGL-DD-NGLLDIEALRSQLEL 227 (625)
Q Consensus 150 taal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~-~~-~~~ld~~~L~~~l~~ 227 (625)
++++..++..+. .+.+||+ |+++.+.|+++...++..|++++.++. ++ ++.+|+++|++++++
T Consensus 108 ~~a~~~~~~~~~-------------~~~~gd~--Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 172 (412)
T 1yaa_A 108 TGALHISAKFFS-------------KFFPDKL--VYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQK 172 (412)
T ss_dssp HHHHHHHHHHHH-------------HHCTTCC--EEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHH
T ss_pred HhHHHHHHHHHH-------------HhCCCCE--EEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHh
Confidence 888887744331 1357886 888889999998888889999999998 43 567999999999974
Q ss_pred hhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCC-Cc-------cc-cCCCCCCCC---CcEE
Q 043646 228 YKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGP-YV-------KI-NLRSRNIDG---YDAI 292 (625)
Q Consensus 228 ~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g-~~-------~i-d~~~~~~~~---~D~v 292 (625)
. .+.+.++++++++||||.+.+ +++|+++|++||+++|+|++++.. +. ++ ++... .. .+++
T Consensus 173 ~--~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~ 248 (412)
T 1yaa_A 173 A--PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEK--LSTVSPVFV 248 (412)
T ss_dssp S--CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHH--TTTTCCEEE
T ss_pred C--CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhc--CCCCcceEE
Confidence 1 113566667999999999976 567899999999999999997532 11 11 22111 12 3577
Q ss_pred EEcCCCCCCCCCC--ceEEE--E-----ecc----ccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhH
Q 043646 293 FLATHKFLGGPGT--PGILL--I-----SKA----LYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQI 359 (625)
Q Consensus 293 ~~S~hK~lggp~g--~G~l~--v-----~~~----~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 359 (625)
+.|++|.+| |.| +|+++ . +++ +. ..+. . ..+....+++.
T Consensus 249 ~~s~sK~~~-~~GlriG~~~~~~~~~~~~~~~~~~l~--~~l~------------------------~-~~~~~~~~~~~ 300 (412)
T 1yaa_A 249 CQSFAKNAG-MYGERVGCFHLALTKQAQNKTIKPAVT--SQLA------------------------K-IIRSEVSNPPA 300 (412)
T ss_dssp EEECTTTSC-CGGGCEEEEEEECCSCTTHHHHHHHHH--HHHH------------------------H-HHHTTTSSCCH
T ss_pred EeccCCCCC-CcCCcceEEEEEecCCCCCHHHHHHHH--HHHH------------------------H-HHhhccCCCCh
Confidence 889999997 544 69988 5 343 31 1110 0 01111223333
Q ss_pred HHHH--HHHHHHHH-Hh--hcCHHHHHHHHHHHHHHHHHhhCCCC---cEEEeCCCCCCCcceEEEEeccCCCCCCcccc
Q 043646 360 VQMI--RAALAFWV-KE--YIGYEVIKKQEDVYIESALGRILPNQ---NIQVLGNTSVKRQAILSFLVYSTTNSSPENMK 431 (625)
Q Consensus 360 ~~~~--~aal~~~~-~~--~~g~~~i~~~~~~l~~~l~~~L~~l~---gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~ 431 (625)
.... .+++.... .+ ....+.+.++.+.+++++.+.|.+++ +++++.+ ..+++.|.-
T Consensus 301 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~~~~~~~~------------ 364 (412)
T 1yaa_A 301 YGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVN----QCGMFSFTG------------ 364 (412)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHH----CCSSEEECC------------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeecc----CceEEEeeC------------
Confidence 3221 22222110 00 12456777888888899999887653 3555444 234444421
Q ss_pred ccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHH
Q 043646 432 IERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEF 511 (625)
Q Consensus 432 ~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ 511 (625)
++..++...| +++||.+++ ++|||++. .+++|+++
T Consensus 365 ------~~~~~~~~~l-~~~gi~v~~-------------------------------------~~Ris~~~-~~~~~i~~ 399 (412)
T 1yaa_A 365 ------LTPQMVKRLE-ETHAVYLVA-------------------------------------SGRASIAG-LNQGNVEY 399 (412)
T ss_dssp ------CCHHHHHHHH-HHHCEECCT-------------------------------------TSEEEGGG-CCTTTHHH
T ss_pred ------CCHHHHHHHH-HhCCEEecc-------------------------------------CcEEEEcc-CCHhHHHH
Confidence 1244564444 568999872 36999984 58999999
Q ss_pred HHHHHHHHHHh
Q 043646 512 ILAALEFIAAY 522 (625)
Q Consensus 512 ll~aL~~~~~~ 522 (625)
++++|+++++.
T Consensus 400 ~~~~l~~~~~~ 410 (412)
T 1yaa_A 400 VAKAIDEVVRF 410 (412)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988753
No 186
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.87 E-value=8.3e-20 Score=196.71 Aligned_cols=330 Identities=14% Similarity=0.028 Sum_probs=203.7
Q ss_pred eEeccCCCCC------cc-hHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC-CCCcEEEeCChH
Q 043646 78 LTYADHTASG------RS-LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG-QADAIIFCGAGT 149 (625)
Q Consensus 78 ~~Yld~~~~~------~~-p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~-~~~~vift~sGt 149 (625)
..|+|+.++. +. ++.|.+++.+.+...... +...+ ......++++++++++|.+ ++ +|+|| +|+
T Consensus 42 ~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~-~~~~~-----~~~~~~~l~~~la~~~~~~~~~-~v~~~-~gg 113 (419)
T 2eo5_A 42 NKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHA-AANDF-----YNIPQLELAKKLVTYSPGNFQK-KVFFS-NSG 113 (419)
T ss_dssp CEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCC-SCSCS-----CCHHHHHHHHHHHHHSSCSSCE-EEEEE-SSH
T ss_pred CEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccc-ccccc-----CCHHHHHHHHHHHHhCCCCcCC-EEEEe-Cch
Confidence 3588886543 33 789999999988543110 00011 1234567888999999987 55 89998 677
Q ss_pred HHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC-------------CeEEEEecCCCCC-
Q 043646 150 TAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL-------------AEVVEIGLDDNGL- 215 (625)
Q Consensus 150 taal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G-------------~~vv~v~~~~~~~- 215 (625)
++++..++.++. ..++++ +|+..+.+|.+........| .+++.+|.+.+..
T Consensus 114 ~ea~~~ai~~~~--------------~~~~~~-vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 178 (419)
T 2eo5_A 114 TEAIEASIKVVK--------------NTGRKY-IIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRN 178 (419)
T ss_dssp HHHHHHHHHHHH--------------TTSCCE-EEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSC
T ss_pred HHHHHHHHHHHH--------------HhhCCc-EEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccc
Confidence 777777766541 112554 34444455555544443222 3678888764322
Q ss_pred ---------------CCHHHHH-HHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-C
Q 043646 216 ---------------LDIEALR-SQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-G 274 (625)
Q Consensus 216 ---------------ld~~~L~-~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~ 274 (625)
+|+++|+ +++++....+++++|+++.++|+||.+.+ +++|.++|++||+++|+|++++ +
T Consensus 179 ~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~ 258 (419)
T 2eo5_A 179 PWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGL 258 (419)
T ss_dssp TTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred cccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 4688999 88873100125677777766678998777 9999999999999999999987 4
Q ss_pred CCccc--cCCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhh
Q 043646 275 PYVKI--NLRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEER 351 (625)
Q Consensus 275 g~~~i--d~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~ 351 (625)
+.... .+...+ ..+|+++ +.|.|+++ .++|++++++++ . .+ +...+ ++
T Consensus 259 g~~g~~~~~~~~~-~~~d~~t--~sK~~~~G~~riG~~~~~~~~--~-~~-~~~~~-~t--------------------- 309 (419)
T 2eo5_A 259 GRTGKLFAIENFN-TVPDVIT--LAKALGGGIMPIGATIFRKDL--D-FK-PGMHS-NT--------------------- 309 (419)
T ss_dssp TTTSSSSGGGGGT-CCCSEEE--ECGGGGTTTSCCEEEEEEGGG--C-CC--------C---------------------
T ss_pred ccCcchhhHHhcC-CCCCEEE--ecccccCCccceEEEEEchHh--h-cC-CcccC-CC---------------------
Confidence 43221 111111 1567775 45999865 678999999887 3 22 10000 00
Q ss_pred hcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCcccc
Q 043646 352 ENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMK 431 (625)
Q Consensus 352 ~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~ 431 (625)
..+.+.....+.++++.. + .+.++.+.+++++.+.|.++ +..+.+ .+.++.+.+.+..
T Consensus 310 -~~~n~~~~~aa~aal~~~--~-----~~~~~~~~~~~~l~~~L~~~--~~~~~~----~g~~~~i~~~~~~-------- 367 (419)
T 2eo5_A 310 -FGGNALACAIGSKVIDIV--K-----DLLPHVNEIGKIFAEELQGL--ADDVRG----IGLAWGLEYNEKK-------- 367 (419)
T ss_dssp -CCCCHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHHHTTS--SSEEEE----ETTEEEEECSCHH--------
T ss_pred -CCCCHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHHHHHh--hhheEe----eeEEEEEEEecCc--------
Confidence 011222222223344432 1 26778888899999999876 211111 2344444332210
Q ss_pred ccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHH
Q 043646 432 IERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEF 511 (625)
Q Consensus 432 ~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ 511 (625)
.... +.+.|. ++||.++++. ++++||++++.+|++|+++
T Consensus 368 ------~~~~-~~~~l~-~~Gv~v~~~~---------------------------------~~~lRis~~~~~t~e~i~~ 406 (419)
T 2eo5_A 368 ------VRDR-IIGESF-KRGLLLLPAG---------------------------------RSAIRVIPPLVISEEEAKQ 406 (419)
T ss_dssp ------HHHH-HHHHHH-HTTEECEEET---------------------------------TTEEEECCCTTCCHHHHHH
T ss_pred ------cHHH-HHHHHH-HCCCEEecCC---------------------------------CCEEEEECCCCCCHHHHHH
Confidence 0134 777775 4799998641 2789999999999999999
Q ss_pred HHHHHHHHHHh
Q 043646 512 ILAALEFIAAY 522 (625)
Q Consensus 512 ll~aL~~~~~~ 522 (625)
++++|++++++
T Consensus 407 ~l~~l~~~l~~ 417 (419)
T 2eo5_A 407 GLDILKKVIKV 417 (419)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 187
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.87 E-value=1.6e-21 Score=212.94 Aligned_cols=392 Identities=11% Similarity=0.045 Sum_probs=223.6
Q ss_pred cccccCCCCCCCCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhh
Q 043646 37 SEFKNDHHPPHSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVG 116 (625)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~ 116 (625)
..++...++...........+++.... ..+.... ...|+|+.+..+. +.|.+++.+.+.. +.. .|...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~---~~~ylD~~~~~~~-~~v~~a~~~~l~~--~~~---~y~~~ 73 (467)
T 2oqx_A 6 PFRIRVIEPVKRTTRAYREEAIIKSGM---NPFLLDS---EDVFIDLLTDSGT-GAVTQSMQAAMMR--GDE---AYSGS 73 (467)
T ss_dssp SSCCCCCCCCCCCCHHHHHHHHHHTTS---CGGGSCG---GGCSEECSCCSSC-SCCCHHHHHHTTS--CCC---CSSSC
T ss_pred chheeeecccccccHHHHHHHHHHcCC---CceeccC---CCeeEecccCCCc-HHHHHHHHHHhcc--Ccc---eeccC
Confidence 344445555555666677777766432 1233222 3469999887766 7888888777632 110 11111
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCC-----C----CceEEEEc
Q 043646 117 QRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRD-----E----ERWVVFLG 187 (625)
Q Consensus 117 ~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~-----g----d~~~Vlv~ 187 (625)
....++++++++++|.+ +++||++|+ +++..++.++ .++ | |+ |+++
T Consensus 74 ----~~~~~l~~~la~~~~~~---~v~~t~~gt-~A~~~al~~~---------------~~~~~~~~G~~~~d~--Ii~~ 128 (467)
T 2oqx_A 74 ----RSYYALAESVKNIFGYQ---YTIPTHQGR-GAEQIYIPVL---------------IKKREQEKGLDRSKM--VAFS 128 (467)
T ss_dssp ----HHHHHHHHHHHHHHCCS---EEEEEC--C-CSHHHHHHHH---------------HHHHHHHHCCCTTTC--EEEE
T ss_pred ----chhHHHHHHHHHHhCcC---cEEEcCCcH-HHHHHHHHHH---------------hccccccCCCCccce--EEec
Confidence 23456889999999863 789995554 4455555554 133 5 65 6666
Q ss_pred CCCCchhH-HHHHHcCCeEEEEe------cC----CCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcc-ccccC---H
Q 043646 188 PYEHHSNL-LSWRQSLAEVVEIG------LD----DNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVT-GIYSD---T 252 (625)
Q Consensus 188 ~~~h~s~~-~~~~~~G~~vv~v~------~~----~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~T-G~~~~---l 252 (625)
.+|.... ..+...|+.++... .+ .++.+|+++|+++|++.. .+++++|++++++|++ |.+.+ +
T Consensus 129 -~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~-~~~~~~vi~~~~~n~~gG~~~~~~~l 206 (467)
T 2oqx_A 129 -NYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG-PNNVPYIVATITSNSAGGQPVSLANL 206 (467)
T ss_dssp -SSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC-GGGCCCEEEESSBCGGGCBCCCHHHH
T ss_pred -ccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcC-CCceeEEEEeccccCCCCccCCHHHH
Confidence 4664433 33444566655431 22 245789999999998421 1268999999999998 77654 7
Q ss_pred HHHHHHHHHcCCEEEEeccCcC-----------CCccccCCCCC---CCCCcEEEEcCCCCCCCCCCceEEEEecc-ccc
Q 043646 253 RSIARLLHQYGGFACFDFAASG-----------PYVKINLRSRN---IDGYDAIFLATHKFLGGPGTPGILLISKA-LYQ 317 (625)
Q Consensus 253 ~~I~~la~~~g~~vivD~A~~~-----------g~~~id~~~~~---~~~~D~v~~S~hK~lggp~g~G~l~v~~~-~~~ 317 (625)
++|+++|++||+++|+|++|+. ++...+...+. ...+|++++|+||++|.|.| |+++.+++ +..
T Consensus 207 ~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~~~~~~~ 285 (467)
T 2oqx_A 207 KAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFFD 285 (467)
T ss_dssp HHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGHH
T ss_pred HHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCCCc-eEEEecChhHHH
Confidence 8999999999999999988765 23222222210 02478889999999987755 77777766 311
Q ss_pred -cCCCCCcc-cCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhh
Q 043646 318 -LGSSPPST-CGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRI 395 (625)
Q Consensus 318 -l~~~~p~~-~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L 395 (625)
+..+.+.. .+++. ...++.+..++. ++...+.+....+. .++..++++++.+.|
T Consensus 286 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~--al~~~l~~~~~~~~-~~~~~~~~~~l~~~L 341 (467)
T 2oqx_A 286 VYTECRTLCVVQEGF---------------------PTYGGLEGGAME--RLAVGLYDGMNLDW-LAYRIAQVQYLVDGL 341 (467)
T ss_dssp HHHHHHHHHHHTTSS---------------------CCCCCCCHHHHH--HHHHHHHHTTCHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCCc---------------------ccccchhhhHHH--HHHHhhHhhhhHHH-HHHHHHHHHHHHHHH
Confidence 11111111 01110 012232322221 22221112222122 234456678888888
Q ss_pred CCCCcEEEeCCCCCCCcceEEEEec---cCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcC
Q 043646 396 LPNQNIQVLGNTSVKRQAILSFLVY---STTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAF 472 (625)
Q Consensus 396 ~~l~gv~v~~~~~~~~~~i~~f~~~---~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~ 472 (625)
.++ ++.+. +. .+.++.+.+. ++.+ ...++...+++.|..++||.+.++..|..+.... .+.
T Consensus 342 ~~~-~~~~~-~~---~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~-~g~ 405 (467)
T 2oqx_A 342 EEI-GVVCQ-QA---GGHAAFVDAGKLLPHIP----------ADQFPAQALACELYKVAGIRAVEIGSFLLGRDPK-TGK 405 (467)
T ss_dssp HHT-TCCEE-EE---CSSCEEEEHHHHSTTSC----------GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTT-TCS
T ss_pred HHC-CCeee-cC---CceEEEEechhhcccCC----------cccccHHHHHHHHHHhcCceeccccccccccccc-ccc
Confidence 776 67666 43 2334444332 1110 0011133457777345799998744321000000 000
Q ss_pred ChhhHHHHHHHHHhCCCCCCCcEEEEecCCC-CCHHHHHHHHHHHHHHHHhh
Q 043646 473 DQTRSLEIRSAIQKGYLGVKPGWTRITFPYY-MSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 473 ~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~-~t~edid~ll~aL~~~~~~~ 523 (625)
+ .-...+++|++++.. ++++|+++++++|++++...
T Consensus 406 ~---------------~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~ 442 (467)
T 2oqx_A 406 Q---------------LPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENA 442 (467)
T ss_dssp B---------------CCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSG
T ss_pred c---------------ccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Confidence 0 000137999999988 99999999999999998764
No 188
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.87 E-value=4.7e-20 Score=196.79 Aligned_cols=328 Identities=12% Similarity=0.075 Sum_probs=198.5
Q ss_pred EeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 79 TYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 79 ~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
-|+|..++ |..++.|.+++.+.+........ .......+++++++++++|. + +++|++ |.+++
T Consensus 37 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-------~~~~~~~~~l~~~la~~~~~--~-~v~~~~-gg~ea 105 (395)
T 3nx3_A 37 KYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSN-------LYYNENIAAAAKNLAKASAL--E-RVFFTN-SGTES 105 (395)
T ss_dssp EEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCT-------TSBCHHHHHHHHHHHHHHTC--S-EEEEES-SHHHH
T ss_pred EEEECCCcHHhccCCCCCHHHHHHHHHHHHhcccccc-------ccCCHHHHHHHHHHHHhcCC--C-eEEEeC-CHHHH
Confidence 48887655 33578999999988854321111 11245677899999999983 3 799985 45554
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHc------------CCeEEEEecCCCCCCCHHH
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQS------------LAEVVEIGLDDNGLLDIEA 220 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~------------G~~vv~v~~~~~~~ld~~~ 220 (625)
+..++.++... .+. .+ .++++ +|+..+..|.+........ +.++..++.+ |+++
T Consensus 106 ~~~al~~~~~~----~~~---~g-~~~~~-vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~ 171 (395)
T 3nx3_A 106 IEGAMKTARKY----AFN---KG-VKGGQ-FIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN-----DISS 171 (395)
T ss_dssp HHHHHHHHHHH----HHH---TT-CTTCE-EEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-----CHHH
T ss_pred HHHHHHHHHHH----hhc---cC-CCCCE-EEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-----CHHH
Confidence 55554443100 000 00 23443 3444444444443333221 2456666654 7999
Q ss_pred HHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc--ccCCCCCCCCCcEEE
Q 043646 221 LRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK--INLRSRNIDGYDAIF 293 (625)
Q Consensus 221 L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~--id~~~~~~~~~D~v~ 293 (625)
|+++++ +++++|+++.++|++|.+.+ +++|.++|++||+++|+|++++ ++... ......+. .+|+++
T Consensus 172 l~~~l~-----~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~-~~d~~t 245 (395)
T 3nx3_A 172 VEKLVN-----EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQI-LPDIMT 245 (395)
T ss_dssp HHTTCC-----TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEE
T ss_pred HHHhcc-----CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCC-CCCEEE
Confidence 999887 57899999999999999988 9999999999999999999987 33221 11111111 467776
Q ss_pred EcCCCCCCCCCCceEEEEeccc-cccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHH
Q 043646 294 LATHKFLGGPGTPGILLISKAL-YQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVK 372 (625)
Q Consensus 294 ~S~hK~lggp~g~G~l~v~~~~-~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~ 372 (625)
+| |.++++.++|++++++++ .+ .+.+...++.. .+.+.......++++...
T Consensus 246 ~s--K~~~~G~~~G~~~~~~~~~~~--~~~~~~~~~~~-----------------------~~~~~~~~aa~aal~~~~- 297 (395)
T 3nx3_A 246 SA--KALGCGLSVGAFVINQKVASN--SLEAGDHGSTY-----------------------GGNPLVCAGVNAVFEIFK- 297 (395)
T ss_dssp EC--GGGTTTSCCEEEEECHHHHHH--HSCTTCCSSCB-----------------------SCCHHHHHHHHHHHHHHH-
T ss_pred ec--ccccCCCceEEEEEchhhhhh--hcCCcccCCCC-----------------------CCCHHHHHHHHHHHHHHH-
Confidence 65 988765568999998886 32 12222111100 112222222233444331
Q ss_pred hhcCHHHHHHHHHHHHHHHHHhh----CCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhh
Q 043646 373 EYIGYEVIKKQEDVYIESALGRI----LPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFN 448 (625)
Q Consensus 373 ~~~g~~~i~~~~~~l~~~l~~~L----~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~ 448 (625)
. +.+.++.+++.+++++.| ..+|.+....+ .+.++.+.+... ....++.+.|.
T Consensus 298 -~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~g~~~~~~~~~~---------------~~~~~~~~~l~ 354 (395)
T 3nx3_A 298 -E---EKILENVNKLTPYLEQSLDELINEFDFCKKRKG----LGFMQGLSLDKS---------------VKVAKVIQKCQ 354 (395)
T ss_dssp -H---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE----ETTEEEEEECTT---------------SCHHHHHHHHH
T ss_pred -h---hHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe----EEEEEEEEeCCc---------------chHHHHHHHHH
Confidence 1 223344444444444444 34455544322 234555544321 12567888886
Q ss_pred hhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 449 DLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 449 ~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+ .||.++++. ++++||++++.+|++|+++++++|++++.+
T Consensus 355 ~-~Gi~v~~~~---------------------------------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 355 E-NALLLISCG---------------------------------ENDLRFLPPLILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp H-TTEECEEET---------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred H-CCCEEecCC---------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 5 699998541 388999999999999999999999998754
No 189
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.87 E-value=3.2e-20 Score=198.54 Aligned_cols=310 Identities=15% Similarity=0.079 Sum_probs=196.7
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH
Q 043646 116 GQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL 195 (625)
Q Consensus 116 ~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~ 195 (625)
++.......++++.++++.|.+ .++++++| ++++..+ ..+ +++||+ |+++...|++..
T Consensus 62 ~r~~~p~~~~l~~~la~l~g~~---~~~~~~sG-~~Ai~~~-~~l---------------~~~gd~--Vi~~~~~y~~~~ 119 (400)
T 3nmy_A 62 SRTHNPTRFAYERCVAALEGGT---RAFAFASG-MAATSTV-MEL---------------LDAGSH--VVAMDDLYGGTF 119 (400)
T ss_dssp TTTCCHHHHHHHHHHHHHHTCS---EEEEESSH-HHHHHHH-HTT---------------SCTTCE--EEEESSCCHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCCC---CEEEecCH-HHHHHHH-HHH---------------cCCCCE--EEEeCCCchHHH
Confidence 3334456778999999999975 34555577 5666664 333 578885 888889998766
Q ss_pred HHHHH-----cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEec
Q 043646 196 LSWRQ-----SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 196 ~~~~~-----~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~ 270 (625)
..+.. .|++++.++.+ |+++|+++++ +++++|++++++||||.+.|+++|+++|++||+++|+|+
T Consensus 120 ~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~-----~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe 189 (400)
T 3nmy_A 120 RLFERVRRRTAGLDFSFVDLT-----DPAAFKAAIR-----ADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDN 189 (400)
T ss_dssp HHHHHTHHHHHCCEEEEECTT-----SHHHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHhhHhhcCeEEEEECCC-----CHHHHHHHhc-----cCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEEC
Confidence 55443 49999999875 8999999987 579999999999999999999999999999999999999
Q ss_pred cCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCC-Cc-e-EEEEecc-ccccCCCCCcccCCceEEeecccccccccccc
Q 043646 271 AASGPYVKINLRSRNIDGYDAIFLATHKFLGGPG-TP-G-ILLISKA-LYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLE 346 (625)
Q Consensus 271 A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~-g~-G-~l~v~~~-~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~ 346 (625)
+++.++....+. + ++|+++.|++|+++||+ .+ | +++++++ +. +.+...
T Consensus 190 ~~~~~~~~~~~~-~---g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~--~~l~~~---------------------- 241 (400)
T 3nmy_A 190 TFASPMLQRPLS-L---GADLVVHSATKYLNGHSDMVGGIAVVGDNAELA--EQMAFL---------------------- 241 (400)
T ss_dssp TTTHHHHCCGGG-G---TCSEEEEETTTTTTCSSSCCCEEEEECSCHHHH--HHHHHH----------------------
T ss_pred CCcccccCChhh-c---CCcEEEecCccccCCCCCcceeEEEEeCCHHHH--HHHHHH----------------------
Confidence 987554322121 2 78999999999999874 23 5 3444333 31 111000
Q ss_pred chhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC-------------CCCc
Q 043646 347 DIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS-------------VKRQ 412 (625)
Q Consensus 347 ~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~-------------~~~~ 412 (625)
.. ....+.+.... ..++.. ....+...++..+++.++.+.|.+.|.+. +..|.- ...+
T Consensus 242 --~~-~~g~~~~~~~a-~~~l~~----l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G 313 (400)
T 3nmy_A 242 --QN-SIGGVQGPFDS-FLALRG----LKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFG 313 (400)
T ss_dssp --HH-HHCCBCCHHHH-HHHHHH----HTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCC
T ss_pred --HH-hcCCCCCHHHH-HHHHHh----HhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCC
Confidence 01 11112222111 111111 12234455566777889999999888876 433321 1246
Q ss_pred ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCCC
Q 043646 413 AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGYL 489 (625)
Q Consensus 413 ~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~ 489 (625)
++++|.+..+. -....+.+.| +.+++.+..|..++. |.......+..+...+ .
T Consensus 314 ~~~~~~l~~~~--------------~~~~~~~~~l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~---------~ 369 (400)
T 3nmy_A 314 GIVSIVLKGGF--------------DAAKRFCEKT-ELFTLAESLGGVESLVNHPAVMTHASIPVARREQ---------L 369 (400)
T ss_dssp SEEEEEETTHH--------------HHHHHHHHHC-SSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHH---------H
T ss_pred ceEEEEeCCcH--------------HHHHHHHHcC-CcceEecCCCCCcceeeCccccccccCCHHHHHh---------c
Confidence 78888774310 0123455555 456677776765542 2222222333222111 2
Q ss_pred CCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 043646 490 GVKPGWTRITFPYYMSNEEFEFILAALE 517 (625)
Q Consensus 490 g~~~g~iRis~~~~~t~edid~ll~aL~ 517 (625)
|+.++.+|+|++....++.++.|.++|+
T Consensus 370 gi~~~liRlsvGle~~~dli~dl~~al~ 397 (400)
T 3nmy_A 370 GISDALVRLSVGIEDLGDLRGDLERALV 397 (400)
T ss_dssp TCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred CCCcCeEEEEeCcCCHHHHHHHHHHHHh
Confidence 5567999999998766666666655554
No 190
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.86 E-value=1.5e-21 Score=208.48 Aligned_cols=287 Identities=14% Similarity=0.102 Sum_probs=187.2
Q ss_pred HHHHHHHHHHhCC-----CCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCC----ceEEEEcCCCCchh
Q 043646 124 HEASNYIKRCLGG-----GQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEE----RWVVFLGPYEHHSN 194 (625)
Q Consensus 124 ~~~~~~ia~~~g~-----~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd----~~~Vlv~~~~h~s~ 194 (625)
.++|+.++++++. .++++|++| +|+++++..++.++ +++|| + |+++.++|+.+
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t-~G~~~al~~~~~~l---------------~~~Gd~~~~~--Vlv~~P~y~~~ 132 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVG-TGSTQLCQAAVHAL---------------SSLARSQPVS--VVAAAPFYSTY 132 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEE-EHHHHHHHHHHHHH---------------HHTSSSSSEE--EEECSSCCTHH
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEe-CChHHHHHHHHHHh---------------cCCCCCCcce--EEEcCCCchhH
Confidence 4566666666652 233379998 89999999998887 46777 6 99999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcC
Q 043646 195 LLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASG 274 (625)
Q Consensus 195 ~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~ 274 (625)
...++..|++++.++++.++. . . +++++|++++++||||.+.+ +|++.++.+++++|+|++++.
T Consensus 133 ~~~~~~~g~~~~~~~~d~~~l-~--------~-----~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~ 196 (391)
T 3bwn_A 133 VEETTYVRSGMYKWEGDAWGF-D--------K-----KGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYW 196 (391)
T ss_dssp HHHHHTTCBTTEEEEEESTTC-C--------C-----CSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCS
T ss_pred HHHHHHcCCeEEEecCCHHHc-C--------C-----CCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCC
Confidence 988888999999998875432 1 1 47899999999999999986 555422333499999999875
Q ss_pred CC-ccccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEE-eccccccCCCCCcccCCceEEeeccccccccccccchhhh
Q 043646 275 PY-VKINLRSRNIDGYDAIFLATHKFLGGPG-TPGILLI-SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEER 351 (625)
Q Consensus 275 g~-~~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v-~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~ 351 (625)
+. .++.. ..+.++++.|++|.||.|+ .+|++++ ++++. ..+.. ....
T Consensus 197 ~~~~~l~~----~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~--~~l~~------------------------~~~~ 246 (391)
T 3bwn_A 197 PHYTPITR----RQDHDIMLFTFSKITGHAGSRIGWALVKDKEVA--KKMVE------------------------YIIV 246 (391)
T ss_dssp TTTSCCCC----CBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHH--HHHHH------------------------HHHH
T ss_pred CCCCcccc----CCCCeEEEEechhhcCCCccceEEEEecCHHHH--HHHHH------------------------Hhcc
Confidence 32 12221 1256899999999997443 2699998 66652 11100 0111
Q ss_pred hcCCChhHHHHH-HHHHHHHHH-------hhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCC---------CCcce
Q 043646 352 ENGGTPQIVQMI-RAALAFWVK-------EYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSV---------KRQAI 414 (625)
Q Consensus 352 ~~~gt~~~~~~~-~aal~~~~~-------~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~---------~~~~i 414 (625)
...+++.+.+.+ .+++.-... .....+.++++.+..++++.+.|.+++++++..+.+. ...+.
T Consensus 247 ~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~ 326 (391)
T 3bwn_A 247 NSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPA 326 (391)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCS
T ss_pred cccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcce
Confidence 122333333322 122221100 0223667788888889999999998888887654321 11222
Q ss_pred EEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCc
Q 043646 415 LSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPG 494 (625)
Q Consensus 415 ~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g 494 (625)
+.+.-.+. ...+.+.| +++||.+++|..|+. .++
T Consensus 327 ~~~~~~~~-----------------~~~~~~~l-~~~gV~v~pg~~fg~----------------------------~~~ 360 (391)
T 3bwn_A 327 FAWLGTKE-----------------ETDLVSEL-RRHKVMSRAGERCGS----------------------------DKK 360 (391)
T ss_dssp EEEEEESS-----------------SCCHHHHH-HHTTEECEEGGGGTC----------------------------CTT
T ss_pred EEEecCCc-----------------HHHHHHHH-HHCCEEEccCCCCCC----------------------------CCC
Confidence 33333221 12455666 558999999987741 148
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 495 WTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 495 ~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
++|||++ ++++++++++++|++++++
T Consensus 361 ~iRis~~--~~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 361 HVRVSML--SREDVFNVFLERLANMKLI 386 (391)
T ss_dssp EEEEESC--SCHHHHHHHHHHHHSCC--
T ss_pred EEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 9999998 3889999999999876543
No 191
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.86 E-value=1.1e-19 Score=196.85 Aligned_cols=349 Identities=11% Similarity=-0.024 Sum_probs=205.9
Q ss_pred eEeccCCCCCc------chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTASGR------SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~~~------~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
.-|+|..++.. .++.|.+++.+.+... .+.. ......+...+++++++++++...+++++||++|+.+
T Consensus 43 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~-----~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea 116 (439)
T 3dxv_A 43 RELIDLSGAWGAASLGYGHPAIVAAVSAAAANP-AGAT-----ILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDA 116 (439)
T ss_dssp CEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSC-SCSC-----SSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHH
T ss_pred CEEEECCCchhhccCCCCCHHHHHHHHHHHHhc-cCcc-----ccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHH
Confidence 34788776555 6889999998888543 1111 1112345678899999999976552379999555555
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeE--------------EEEecCCCCCC-
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEV--------------VEIGLDDNGLL- 216 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~v--------------v~v~~~~~~~l- 216 (625)
+..++.+.- .+.++++ +|+..+..|.+...+....|... ..++.+..+..
T Consensus 117 -~~~al~~~~-------------~~~~~~~-vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (439)
T 3dxv_A 117 -NEAAYRAIV-------------KATGRSG-VIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDP 181 (439)
T ss_dssp -HHHHHHHHH-------------HHHSCCE-EEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBT
T ss_pred -HHHHHHHHH-------------HHhCCCE-EEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccc
Confidence 444444320 0123343 55666666666654444333322 23333322222
Q ss_pred ----CHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc--ccCCCCC
Q 043646 217 ----DIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK--INLRSRN 285 (625)
Q Consensus 217 ----d~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~--id~~~~~ 285 (625)
|+++|++++.+ ...+++++|+++.++|++|.+.| +++|.++|++||+++|+|++++ ++... ......+
T Consensus 182 ~~~~d~~~le~~l~~-~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~ 260 (439)
T 3dxv_A 182 TGDAILTLLTEKLAA-VPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEG 260 (439)
T ss_dssp TSHHHHHHHHHHHHT-SCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTT
T ss_pred cHHHHHHHHHHHHHh-cCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcC
Confidence 68999999941 11256889999999999999988 9999999999999999999986 22111 1111111
Q ss_pred CCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHH
Q 043646 286 IDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRA 365 (625)
Q Consensus 286 ~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~a 365 (625)
..+|++ +++|.+++...+|++++++++ .+.+.+...+ ...+.+.......+
T Consensus 261 -~~~di~--s~sK~~~~G~riG~~~~~~~~--~~~~~~~~~~------------------------~t~~~~~~~~aa~a 311 (439)
T 3dxv_A 261 -FVPDIL--VLGKGLGGGLPLSAVIAPAEI--LDCASAFAMQ------------------------TLHGNPISAAAGLA 311 (439)
T ss_dssp -CCCSEE--EECGGGGTTSCCEEEEEEHHH--HTSCSSSSCC------------------------TTTTCHHHHHHHHH
T ss_pred -CCCCEE--EEcchhcCCcceEEEEECHHH--HhhhcCCCcC------------------------CCcccHHHHHHHHH
Confidence 146777 455999853358999999887 3333322100 00122222222233
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC----CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChH
Q 043646 366 ALAFWVKEYIGYEVIKKQEDVYIESALGRILP----NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGP 441 (625)
Q Consensus 366 al~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~----l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~ 441 (625)
+++.. +. +.+.++.+++.+++++.|.+ ++.+....+ .+.++.+.+....... ........
T Consensus 312 al~~~--~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~-------~~~~~~~~ 375 (439)
T 3dxv_A 312 VLETI--DR---DDLPAMAERKGRLLRDGLSELAKRHPLIGDIRG----RGLACGMELVCDRQSR-------EPARAETA 375 (439)
T ss_dssp HHHHH--HH---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE----ETTEEEEEEEEETTTT-------EECHHHHH
T ss_pred HHHHH--Hh---cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE----EEEEEEEEEecCcccc-------CCCHHHHH
Confidence 44433 11 23344555555555555543 455554433 3455555543211000 00011245
Q ss_pred HHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 442 FVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 442 ~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
++.+.|.+ .||.++++.. .++++||++++.++++|+++++++|++++.
T Consensus 376 ~~~~~l~~-~Gv~v~~~~~-------------------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 423 (439)
T 3dxv_A 376 KLIYRAYQ-LGLVVYYVGM-------------------------------NGNVLEFTPPLTITETDIHKALDLLDRAFS 423 (439)
T ss_dssp HHHHHHHH-HTEECEEEST-------------------------------TSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-CCcEEeecCC-------------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 67788866 5999986521 138899999999999999999999999988
Q ss_pred hhhh
Q 043646 522 YGHR 525 (625)
Q Consensus 522 ~~~~ 525 (625)
+..+
T Consensus 424 ~~~~ 427 (439)
T 3dxv_A 424 ELSA 427 (439)
T ss_dssp TGGG
T ss_pred HHhc
Confidence 7544
No 192
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.86 E-value=2.9e-21 Score=205.92 Aligned_cols=329 Identities=17% Similarity=0.110 Sum_probs=205.4
Q ss_pred eccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh-CC--CCCCcEEE--eCChHHHHHH
Q 043646 80 YADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCL-GG--GQADAIIF--CGAGTTAAIK 154 (625)
Q Consensus 80 Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~-g~--~~~~~vif--t~sGttaal~ 154 (625)
|+|.....++++.+.+++.+.+... ..+ .|... ....++++.+++++ +. +++ +|+| | +|+++++.
T Consensus 36 ~~~~~~~~~~~~~v~~a~~~~~~~~--~~~--~y~~~----~g~~~lr~~la~~~~~~~~~~~-~v~~~~~-~g~~~a~~ 105 (394)
T 2ay1_A 36 YKDATGHTPIMRAVHAAEQRMLETE--TTK--TYAGL----SGEPEFQKAMGELILGDGLKSE-TTATLAT-VGGTGALR 105 (394)
T ss_dssp CCCTTSCCCCCHHHHHHHHHHHHHC--CCC--CCCCS----SCCHHHHHHHHHHHHGGGCCGG-GEEEEEE-EHHHHHHH
T ss_pred eeCCCCCccCcHHHHHHHHHhcCCc--ccC--CCCCC----CCcHHHHHHHHHHHhCCCCCcc-cEEEEec-CCchhHHH
Confidence 4454444567788999987765320 011 11111 11345777777776 44 444 7888 8 78888888
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecC--CCCCCCHHHHHHHHHHhhhCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLD--DNGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~--~~~~ld~~~L~~~l~~~~~~~ 232 (625)
.++.++. .+.+||+ |+++.+.|+++...++..|++++.++.+ .++.+|+++|++++++. .+
T Consensus 106 ~~~~~~~-------------~~~~gd~--vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~--~~ 168 (394)
T 2ay1_A 106 QALELAR-------------MANPDLR--VFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAA--KK 168 (394)
T ss_dssp HHHHHHH-------------HHCTTCC--EEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTC--CT
T ss_pred HHHHHHH-------------hcCCCCE--EEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhC--CC
Confidence 8877652 1247886 8888899999988888899999999985 45678999999999741 12
Q ss_pred CCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCcc-----ccCCCCCCCCC-cEEEEcCCCCCCCC
Q 043646 233 RPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVK-----INLRSRNIDGY-DAIFLATHKFLGGP 303 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~-----id~~~~~~~~~-D~v~~S~hK~lggp 303 (625)
+++++++++++||||.+.| +++|+++|++||+++|+|++++..... ..+..+...+. ++++.|++|++|.|
T Consensus 169 ~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 248 (394)
T 2ay1_A 169 GDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIY 248 (394)
T ss_dssp TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCG
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCc
Confidence 4688888999999999976 557899999999999999998754321 11111100022 36677999999733
Q ss_pred C-CceEEEE---eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCC-hhHHHH-HHHHHHHH-HHh--h
Q 043646 304 G-TPGILLI---SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGT-PQIVQM-IRAALAFW-VKE--Y 374 (625)
Q Consensus 304 ~-g~G~l~v---~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt-~~~~~~-~~aal~~~-~~~--~ 374 (625)
+ .+|++++ ++++.. .+.. .... ..+...++ +.+.+. +.++++.. +.+ .
T Consensus 249 G~riG~~~~~~~~~~~~~--~l~~--------------------~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~ 305 (394)
T 2ay1_A 249 RERTGCLLALCADAATRE--LAQG--------------------AMAF-LNRQTYSFPPFHGAKIVSTVLTTPELRADWM 305 (394)
T ss_dssp GGCEEEEEEECSSHHHHH--HHHH--------------------HHHH-HHHTTTSSCCCHHHHHHHHHHHSHHHHHHHH
T ss_pred CCccceEEEEeCCHHHHH--HHHH--------------------HHHH-HHhhhcCCCChHHHHHHHHHhcChHHHHHHH
Confidence 2 3699998 444310 0000 0000 01111222 222221 12222211 000 1
Q ss_pred cCHHHHHHHHHHHHHHHHHhhCCCC---cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhc
Q 043646 375 IGYEVIKKQEDVYIESALGRILPNQ---NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLF 451 (625)
Q Consensus 375 ~g~~~i~~~~~~l~~~l~~~L~~l~---gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~ 451 (625)
...+.+.++.+.+++++.+.|.++. ++++..+ ..+++.+.-. ....+.+.| +++
T Consensus 306 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~g~~~~~~~------------------~~~~~~~~l-~~~ 362 (394)
T 2ay1_A 306 AELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAE----HRGMFSRLGA------------------TPEQVKRIK-EEF 362 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHH----CCSSEEECCC------------------CHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcC----CceEEEeeCC------------------CHHHHHHHH-HhC
Confidence 2356777788888888888887652 3444433 2345544322 134565555 558
Q ss_pred CeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 452 GIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 452 gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
||.+++| +||+++ +++++|+++++++|+++
T Consensus 363 gi~v~~~-------------------------------------~Ris~~-~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 363 GIYMVGD-------------------------------------SRINIA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp CEECCTT-------------------------------------CEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred CEEecCC-------------------------------------CeEEee-cCCHhhHHHHHHHHHHc
Confidence 9998731 599998 57999999999999875
No 193
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.86 E-value=8.4e-21 Score=199.53 Aligned_cols=292 Identities=14% Similarity=0.093 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH---HH
Q 043646 122 MVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL---SW 198 (625)
Q Consensus 122 ~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~---~~ 198 (625)
...++++++++++|.+. . +++++|+.+ +..++.++ ..+||+.+|++++..|++... ..
T Consensus 48 ~~~~l~~~la~~~~~~~--~-i~~~~G~~a-~~~al~~~---------------~~~gd~~~vi~~~~~~~~~~~~~~~~ 108 (357)
T 3lws_A 48 IIEPFEQKFADVLGMDD--A-VFFPSGTMA-QQVALRIW---------------SDETDNRTVAYHPLCHLEIHEQDGLK 108 (357)
T ss_dssp THHHHHHHHHHHHTCSE--E-EEESCHHHH-HHHHHHHH---------------HHHHTCCEEEECTTCHHHHSSTTHHH
T ss_pred HHHHHHHHHHHHhCCCc--E-EEecCcHHH-HHHHHHHH---------------hhcCCCcEEEecccceeeeeccchhh
Confidence 45678999999999842 3 444477654 45555554 245553358888888876543 23
Q ss_pred HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcc-ccccC---HHHHHHHHHHcCCEEEEeccCcC
Q 043646 199 RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVT-GIYSD---TRSIARLLHQYGGFACFDFAASG 274 (625)
Q Consensus 199 ~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~T-G~~~~---l~~I~~la~~~g~~vivD~A~~~ 274 (625)
...|++++.++. +++.+|+++|+++ .++++|++++++||| |.+.+ +++|+++|++||+++|+|+|++.
T Consensus 109 ~~~g~~~~~v~~-~~~~~d~~~l~~~-------~~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~ 180 (357)
T 3lws_A 109 ELHPIETILVGA-ADRLMTLDEIKAL-------PDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLF 180 (357)
T ss_dssp HHSSCEEEECSC-TTSCCCHHHHHTC-------CSCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHH
T ss_pred hccCcEEEEecC-CCCCcCHHHHhcC-------cCcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhh
Confidence 456899888884 4567999998876 138999999999998 98875 88999999999999999999761
Q ss_pred ---CCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhh
Q 043646 275 ---PYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEER 351 (625)
Q Consensus 275 ---g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~ 351 (625)
+........+. ..+|+++.|+||+|++|.| |+++.++++.. .+... ...
T Consensus 181 ~~~~~~~~~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~~~~~~--~~~~~------------------------~~~ 232 (357)
T 3lws_A 181 EMLPYYEKTAAEIA-GLFDSIYISFYKGLGGIAG-AILAGPAAFCQ--TARIW------------------------KRR 232 (357)
T ss_dssp HHHHHHTCCHHHHH-TTSSEEEEESSSTTCCSSC-EEEEECHHHHH--HHHHH------------------------HHH
T ss_pred hhhhhcCCChHHHH-hcCCEEEEeccccCCCCce-EEEEcCHHHHH--HHHHH------------------------HHH
Confidence 11111111111 2579999999999988988 99988887632 11100 000
Q ss_pred hcCCC--hhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEe-CCCCCCCcceEEEEeccCCCCCCc
Q 043646 352 ENGGT--PQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVL-GNTSVKRQAILSFLVYSTTNSSPE 428 (625)
Q Consensus 352 ~~~gt--~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~-~~~~~~~~~i~~f~~~~~~~~~~~ 428 (625)
+..+. .+..+. +++..+ .+. .+.+ ++..++++++.+.|.++|++++. .+. ...++.+.+ +...
T Consensus 233 ~~~~~~~~~~~~~--~~~~~l-~~~--~~~~-~~~~~~~~~l~~~L~~~~g~~~~~~~~---~~~~~~~~~-~~~~---- 298 (357)
T 3lws_A 233 YGGDLISLYPYIV--SADYYY-ELR--KDRM-GQYYEQAKQLAEQFNALPGVHTTPEVP---VSNMFHLHF-DGQA---- 298 (357)
T ss_dssp TTCCCSCCHHHHH--HHHHHH-HHH--TTCH-HHHHHHHHHHHHHHHTSTTEEEESSSC---SSSEEEEEE-ESCH----
T ss_pred hcCCcccchHHHH--HHHHHH-HHH--HHHH-HHHHHHHHHHHHHHHhCCCCeeccCCC---cceEEEEEe-cCCh----
Confidence 00111 122221 111111 111 1122 23455678899999999999985 332 234443333 3210
Q ss_pred cccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCC---CC
Q 043646 429 NMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYY---MS 505 (625)
Q Consensus 429 ~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~---~t 505 (625)
..+..++.+.|.+ +||.+++|..+. + ..+++|++++.. .+
T Consensus 299 --------~~~~~~~~~~l~~-~Gi~v~~g~~~~-~---------------------------~~~~~r~~i~~~~~~~~ 341 (357)
T 3lws_A 299 --------ADISPKLEQVQEE-TGLGFVGYLVDK-D---------------------------GYCSTEISVGDAYGELD 341 (357)
T ss_dssp --------HHHHHHHHHHHHH-HCEESCSCCEEC-S---------------------------SEEEEEEEBCTTGGGSC
T ss_pred --------HHHHHHHHHHHHh-cCeEEecccccC-C---------------------------CceEEEEEecchhhhcC
Confidence 0013567777754 799999885432 1 136899998743 57
Q ss_pred HHHHHHHHHHHHHH
Q 043646 506 NEEFEFILAALEFI 519 (625)
Q Consensus 506 ~edid~ll~aL~~~ 519 (625)
.++++..++.|.+.
T Consensus 342 ~~~l~~al~~l~~a 355 (357)
T 3lws_A 342 QQTRDAGFARLRQA 355 (357)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888887764
No 194
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.86 E-value=1.3e-20 Score=202.21 Aligned_cols=333 Identities=12% Similarity=0.015 Sum_probs=209.8
Q ss_pred eccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh-CC-----CCCCcEEE--eCChHHH
Q 043646 80 YADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCL-GG-----GQADAIIF--CGAGTTA 151 (625)
Q Consensus 80 Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~-g~-----~~~~~vif--t~sGtta 151 (625)
|+|..+..++++.+.+++.+.+... ...+ .|... ....++++.+++++ +. +++ +|++ | +|+++
T Consensus 40 ~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~--~y~~~----~g~~~lr~~la~~~~~~~~~~~~~~-~v~~~~t-~gg~~ 110 (412)
T 1ajs_A 40 YRTDDCQPWVLPVVRKVEQRIANNS-SLNH--EYLPI----LGLAEFRTCASRLALGDDSPALQEK-RVGGVQS-LGGTG 110 (412)
T ss_dssp CCCTTSCCCCCHHHHHHHHHHHTCT-TCCC--CCCCT----TCCHHHHHHHHHHHHCTTCHHHHTT-CEEEEEE-EHHHH
T ss_pred ecCCCCCccccHHHHHHHHHhhhCh-hhcc--CCCCC----CCCHHHHHHHHHHHhcCCCCccCCC-cEEEEEC-CCcHH
Confidence 5555555567788999988776220 0111 11111 11356778888887 43 344 7988 8 78888
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCC-----CceEEEEcCCCCchhHHHHHHcCCe-EEEEecC--CCCCCCHHHHHH
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDE-----ERWVVFLGPYEHHSNLLSWRQSLAE-VVEIGLD--DNGLLDIEALRS 223 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~g-----d~~~Vlv~~~~h~s~~~~~~~~G~~-vv~v~~~--~~~~ld~~~L~~ 223 (625)
++..++..+. .+.+| |+ |+++.++|+++...++..|++ ++.++.+ .++.+|+++|++
T Consensus 111 a~~~~~~~~~-------------~~~~g~~~~~d~--Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~ 175 (412)
T 1ajs_A 111 ALRIGAEFLA-------------RWYNGTNNKDTP--VYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLS 175 (412)
T ss_dssp HHHHHHHHHH-------------HHSSSSSCCCSC--EEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHH
T ss_pred HHHHHHHHHH-------------HhCcCcCCCCCe--EEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHH
Confidence 8888755331 13577 76 888889999998888889999 9999984 456789999999
Q ss_pred HHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCc-CCCcc-----ccCCCCC-CCCCcEEE
Q 043646 224 QLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAAS-GPYVK-----INLRSRN-IDGYDAIF 293 (625)
Q Consensus 224 ~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~-~g~~~-----id~~~~~-~~~~D~v~ 293 (625)
++++. .++++++++++++||||.+.+ +++|+++|++||+++|+|++++ +++.. ..+..+. ....++++
T Consensus 176 ~l~~~--~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 253 (412)
T 1ajs_A 176 DLENA--PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCA 253 (412)
T ss_dssp HHHHS--CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEE
T ss_pred HHHhC--CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEE
Confidence 99741 236789889999999999966 5689999999999999999955 33221 1121110 01224788
Q ss_pred EcCCCCCCCCC-CceEEEE---eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCC-hhHHHH-HHHHH
Q 043646 294 LATHKFLGGPG-TPGILLI---SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGT-PQIVQM-IRAAL 367 (625)
Q Consensus 294 ~S~hK~lggp~-g~G~l~v---~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt-~~~~~~-~~aal 367 (625)
.|++|.+|.++ .+|++++ +++... .+. ..... ..+...++ +.+.+. +.+++
T Consensus 254 ~s~sK~~~~~G~riG~~~~~~~~~~~~~--~~~--------------------~~~~~-~~~~~~~~~~~~~~~a~~~~l 310 (412)
T 1ajs_A 254 QSFSKNFGLYNERVGNLTVVAKEPDSIL--RVL--------------------SQMQK-IVRVTWSNPPAQGARIVARTL 310 (412)
T ss_dssp EECTTTSCCGGGCEEEEEEECSSHHHHH--HHH--------------------HHHHH-HHHTTTSSCCSHHHHHHHHHH
T ss_pred EecccccCCCCcceEEEEEecCCHHHHH--HHH--------------------HHHHH-HHhcccCCCChHHHHHHHHHH
Confidence 89999997433 3799998 655310 000 00000 01112222 222222 12222
Q ss_pred HHHH-Hh--hcCHHHHHHHHHHHHHHHHHhhCCCC---cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChH
Q 043646 368 AFWV-KE--YIGYEVIKKQEDVYIESALGRILPNQ---NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGP 441 (625)
Q Consensus 368 ~~~~-~~--~~g~~~i~~~~~~l~~~l~~~L~~l~---gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~ 441 (625)
.... .+ ....+.+.++.+.+++++.+.|.+++ ++++..+ ..+++.|.-. +..
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~~~~~~~~~------------------~~~ 368 (412)
T 1ajs_A 311 SDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITD----QIGMFSFTGL------------------NPK 368 (412)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHH----CCSSEEECCC------------------CHH
T ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcC----CCceEEEeCC------------------CHH
Confidence 2110 00 12356778888888999999998763 3555433 2345544321 133
Q ss_pred HHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 442 FVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 442 ~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.+...| +++||.+++ + +||+++. .+++|+++++++|+++++
T Consensus 369 ~~~~~l-~~~gv~v~~------------------------------------~-~Ris~~~-~~~~~i~~~~~~l~~~l~ 409 (412)
T 1ajs_A 369 QVEYLI-NQKHIYLLP------------------------------------S-GRINMCG-LTTKNLDYVATSIHEAVT 409 (412)
T ss_dssp HHHHHH-HTTCEECCT------------------------------------T-SEEEGGG-CCTTTHHHHHHHHHHHHH
T ss_pred HHHHHH-HhCCEEecC------------------------------------C-cEEEeee-CCHHHHHHHHHHHHHHHH
Confidence 444444 568999873 1 5999984 489999999999999876
Q ss_pred h
Q 043646 522 Y 522 (625)
Q Consensus 522 ~ 522 (625)
+
T Consensus 410 ~ 410 (412)
T 1ajs_A 410 K 410 (412)
T ss_dssp H
T ss_pred h
Confidence 4
No 195
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.86 E-value=4.8e-19 Score=192.02 Aligned_cols=334 Identities=15% Similarity=0.112 Sum_probs=206.4
Q ss_pred eEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
..|+|..+. +..++.|.+++.+.+.... +.+.. + ..+...++++++++++|. + .++|+++|+.+
T Consensus 76 ~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~-~~~~~-~-----~~~~~~~l~~~la~~~g~--~-~v~~~~sGseA 145 (439)
T 2oat_A 76 RKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLT-LTSRA-F-----YNNVLGEYEEYITKLFNY--H-KVLPMNTGVEA 145 (439)
T ss_dssp CEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCS-CCCTT-S-----EESSHHHHHHHHHHHHTC--S-EEEEESSHHHH
T ss_pred CEEEEccCCcccccCCCCCHHHHHHHHHHHHhcC-cccCc-c-----CCHHHHHHHHHHHHhcCC--C-EEEEeCCHHHH
Confidence 358887652 2267899999999886532 11111 1 123456788899999873 3 78998555554
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCC-CceEEEEcCCCCchhHHHHHHcC------------CeEEEEecCCCCCCCH
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDE-ERWVVFLGPYEHHSNLLSWRQSL------------AEVVEIGLDDNGLLDI 218 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~h~s~~~~~~~~G------------~~vv~v~~~~~~~ld~ 218 (625)
+..++.++... ..-..++.+| ++ +|+..+..|.+....+...| .+++.+|.+ |+
T Consensus 146 -~~~al~~~~~~------~~~~~g~~~g~~~-vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~ 212 (439)
T 2oat_A 146 -GETACKLARKW------GYTVKGIQKYKAK-IVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN-----DL 212 (439)
T ss_dssp -HHHHHHHHHHH------HHHTTCCCTTCCE-EEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSS-----CH
T ss_pred -HHHHHHHHHHH------hhhccCCCCCCCe-EEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCC-----CH
Confidence 55554443100 0000012355 43 44444455555554555444 467777753 89
Q ss_pred HHHHHHHHHhhhCCCCeEEEEecccCcccccc----CHHHHHHHHHHcCCEEEEeccCc-CCCcc--ccCCCCCCCCCcE
Q 043646 219 EALRSQLELYKAAKRPMLGSFSACSNVTGIYS----DTRSIARLLHQYGGFACFDFAAS-GPYVK--INLRSRNIDGYDA 291 (625)
Q Consensus 219 ~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~----~l~~I~~la~~~g~~vivD~A~~-~g~~~--id~~~~~~~~~D~ 291 (625)
++|+++++. +++++|+++.+++++|.+. ++++|.++|++||+++|+|+++. ++... ..+...+. .+|+
T Consensus 213 ~~le~~l~~----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~-~~Di 287 (439)
T 2oat_A 213 PALERALQD----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENV-RPDI 287 (439)
T ss_dssp HHHHHHTTS----TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSE
T ss_pred HHHHHHhCC----CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCC-CCcE
Confidence 999999852 4688988888888899876 79999999999999999999985 22111 11111111 4687
Q ss_pred EEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHH
Q 043646 292 IFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFW 370 (625)
Q Consensus 292 v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~ 370 (625)
+ +++|++++. ..+|++++++++ .+.+.+...+ .+ + .+++.......++++.+
T Consensus 288 ~--t~sK~l~~G~~~~G~v~~~~~~--~~~l~~~~~~-~t---------------------~-~~~~~~~aaa~aal~~~ 340 (439)
T 2oat_A 288 V--LLGKALSGGLYPVSAVLCDDDI--MLTIKPGEHG-ST---------------------Y-GGNPLGCRVAIAALEVL 340 (439)
T ss_dssp E--EECGGGGTTSSCCEEEEECHHH--HTTSCTTSSC-CS---------------------S-TTCHHHHHHHHHHHHHH
T ss_pred E--EecccccCCCCCeEEEEECHHH--HhccCCCCcc-cC---------------------C-CcCHHHHHHHHHHHHHH
Confidence 7 556999863 348999999887 3344321110 00 0 12222222233445544
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHhhCCC--CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhh
Q 043646 371 VKEYIGYEVIKKQEDVYIESALGRILPN--QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFN 448 (625)
Q Consensus 371 ~~~~~g~~~i~~~~~~l~~~l~~~L~~l--~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~ 448 (625)
. . +.+.++.+++++++.+.|.++ +.+.... ..+.++.+.+.... ..+..++.+.|.
T Consensus 341 ~--~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~----~~g~~~~v~l~~~~-------------~~~~~~l~~~l~ 398 (439)
T 2oat_A 341 E--E---ENLAENADKLGIILRNELMKLPSDVVTAVR----GKGLLNAIVIKETK-------------DWDAWKVCLRLR 398 (439)
T ss_dssp H--H---TTHHHHHHHHHHHHHHHHTTSCTTTEEEEE----EETTEEEEEECCCS-------------SCCHHHHHHHHH
T ss_pred h--h---hhHHHHHHHHHHHHHHHHHHhcCCCcEEEE----eeeeEEEEEEecCc-------------cHHHHHHHHHHH
Confidence 2 1 245678888899999999876 2221111 13455555443210 123567888886
Q ss_pred hhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 449 DLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 449 ~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+ +||.++++ .++++||++++.+|++|+++++++|++++.+
T Consensus 399 ~-~Gv~v~~~---------------------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 399 D-NGLLAKPT---------------------------------HGDIIRFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp H-TTEECCBS---------------------------------SSSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred H-CCeEEecC---------------------------------CCCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 5 69999752 1378999999999999999999999988754
No 196
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.86 E-value=2.8e-21 Score=206.06 Aligned_cols=327 Identities=16% Similarity=0.122 Sum_probs=205.5
Q ss_pred eccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC------CCCCcEEE--eCChHHH
Q 043646 80 YADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG------GQADAIIF--CGAGTTA 151 (625)
Q Consensus 80 Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~------~~~~~vif--t~sGtta 151 (625)
|+|..+..++++.+.+++.+.+... ..+ .|... ....++++.++++++. +++ +|++ | +|+++
T Consensus 36 ~~~~~~~~~~~~~v~~a~~~~~~~~--~~~--~y~~~----~g~~~lr~~la~~~~~~~~~~~~~~-~v~~~~~-~g~~~ 105 (396)
T 2q7w_A 36 YKDETGKTPVLTSVKKAEQYLLENE--TTK--NYLGI----DGIPEFGRCTQELLFGKGSALINDK-RARTAQT-PGGTG 105 (396)
T ss_dssp CCCTTSCCCCCHHHHHHHHHHHHHC--CCC--CCCCT----TCCHHHHHHHHHHHHCTTCHHHHTT-CEEEEEE-SHHHH
T ss_pred ccCCCCCccCcHHHHHHHHhhcCcc--ccc--CCCCC----CCCHHHHHHHHHHHhcCCCCccccc-cEEEEec-ccchh
Confidence 6666666677789999987765321 111 11111 1134577777777622 244 7887 8 78888
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecC--CCCCCCHHHHHHHHHHhh
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLD--DNGLLDIEALRSQLELYK 229 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~--~~~~ld~~~L~~~l~~~~ 229 (625)
++..++.++. .+.+||+ |++..+.|+++...++..|++++.++.+ .++.+|+++|++++++.
T Consensus 106 a~~~~~~~~~-------------~~~~gd~--Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~- 169 (396)
T 2q7w_A 106 ALRVAADFLA-------------KNTSVKR--VWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEA- 169 (396)
T ss_dssp HHHHHHHHHH-------------HHSCCCE--EEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTC-
T ss_pred hHHHHHHHHH-------------HhCCCCE--EEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhC-
Confidence 8888876652 1357885 8888899999988888899999999985 45678999999999731
Q ss_pred hCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCcc-----ccCCCCCC-CCCcEEEEcCCCCC
Q 043646 230 AAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVK-----INLRSRNI-DGYDAIFLATHKFL 300 (625)
Q Consensus 230 ~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~-----id~~~~~~-~~~D~v~~S~hK~l 300 (625)
.++++++++++++||||.+.+ +++|+++|++||+++|+|++++..... ..+..+.. ...++++.|++|++
T Consensus 170 -~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 248 (396)
T 2q7w_A 170 -QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNF 248 (396)
T ss_dssp -CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTT
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccc
Confidence 124788999999999999976 557999999999999999997753221 11211100 12357788999999
Q ss_pred CCCC-CceEEEE---eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh---
Q 043646 301 GGPG-TPGILLI---SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE--- 373 (625)
Q Consensus 301 ggp~-g~G~l~v---~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~--- 373 (625)
|.|+ .+|++++ +++.. ..+.. .+.. ..+...++++..+... +.+++ ..
T Consensus 249 ~~~G~riG~~~~~~~~~~~~--~~~~~--------------------~~~~-~~~~~~~~~~~~~~~a-~~~~l-~~~~l 303 (396)
T 2q7w_A 249 GLYNERVGACTLVAADSETV--DRAFS--------------------QMKA-AIRANYSNPPAHGASV-VATIL-SNDAL 303 (396)
T ss_dssp TCGGGCCEEEEEECSSHHHH--HHHHH--------------------HHHH-HHHTTTSSCCHHHHHH-HHHHH-TSHHH
T ss_pred cccccccceEEEEcCCHHHH--HHHHH--------------------HHHH-HHhhccCCCCcHHHHH-HHHHh-cChhh
Confidence 7332 2799987 34220 00000 0000 0111223333333221 12221 01
Q ss_pred ----hcCHHHHHHHHHHHHHHHHHhhCCCC---cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHH
Q 043646 374 ----YIGYEVIKKQEDVYIESALGRILPNQ---NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATL 446 (625)
Q Consensus 374 ----~~g~~~i~~~~~~l~~~l~~~L~~l~---gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ 446 (625)
....+.+.++.+.+++++.+.|.++. ++++..+ ..+++.|.-. +...+.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~~~~~~~~~------------------~~~~~~~~ 361 (396)
T 2q7w_A 304 RAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIK----QNGMFSFSGL------------------TKEQVLRL 361 (396)
T ss_dssp HHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHH----CCSSEEECCC------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecC----CCceEEEecC------------------CHHHHHHH
Confidence 12345666777778888888887763 2554433 2345544321 13345555
Q ss_pred hhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 447 FNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 447 L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
| +++||.+++ + +||+++.. +++|+++++++|+++
T Consensus 362 l-~~~gv~v~~------------------------------------~-~Ris~~~~-~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 362 R-EEFGVYAVA------------------------------------S-GRVNVAGM-TPDNMAPLCEAIVAV 395 (396)
T ss_dssp H-HHHCEECCT------------------------------------T-CEEEGGGC-CTTTHHHHHHHHHHH
T ss_pred H-HhcCeeecC------------------------------------C-ceEEEeec-CHHHHHHHHHHHHhc
Confidence 5 558999873 1 59999854 899999999999875
No 197
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.85 E-value=2e-18 Score=187.77 Aligned_cols=358 Identities=11% Similarity=0.098 Sum_probs=201.2
Q ss_pred EeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 79 TYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 79 ~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
-|+|..++ |..++.|.+++.+.+..... .. .....+...+++++++++++.+.+ |+||++|+.+
T Consensus 50 ~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~--~~-----~~~~~~~~~~la~~l~~~~~~~~~--v~~~~ggseA- 119 (452)
T 3n5m_A 50 RYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSY--FP-----MSQSHEPAIKLAEKLNEWLGGEYV--IFFSNSGSEA- 119 (452)
T ss_dssp EEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCC--CC-----TTSEEHHHHHHHHHHHHHHTSCEE--EEEESSHHHH-
T ss_pred EEEECCcchhhccCCCCCHHHHHHHHHHHHhcCC--cc-----cccCCHHHHHHHHHHHHhCCCCce--EEEeCchHHH-
Confidence 48887544 45578999999998864321 11 011235667889999999986544 8898555554
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC------------eEEEEecCCCC---CCC
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA------------EVVEIGLDDNG---LLD 217 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~------------~vv~v~~~~~~---~ld 217 (625)
+..++.++... ....+-.++++ +|+..+..|..........|. .+..++..... .-|
T Consensus 120 ~~~al~~~~~~-------~~~~g~~~~~~-vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (452)
T 3n5m_A 120 NETAFKIARQY-------YAQKGEPHRYK-FMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIE 191 (452)
T ss_dssp HHHHHHHHHHH-------HHTTTCTTCCE-EEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTT
T ss_pred HHHHHHHHHHH-------HHhcCCCCCCE-EEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCC
Confidence 55444443100 00000013443 444444445444333332221 24455542211 112
Q ss_pred ---------HHHHHHHHHHhhhCCCCeEEEEecc-cCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc--cc
Q 043646 218 ---------IEALRSQLELYKAAKRPMLGSFSAC-SNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK--IN 280 (625)
Q Consensus 218 ---------~~~L~~~l~~~~~~~~~~lv~~~~~-~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~--id 280 (625)
+++|++++++ ...+++++|+++.+ +| ||.+.| +++|.++|++||+++|+|++++ ++... ..
T Consensus 192 ~~~~~~~~~~~~le~~l~~-~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~ 269 (452)
T 3n5m_A 192 RENIYDVECVKEVDRVMTW-ELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFG 269 (452)
T ss_dssp TSCGGGCHHHHHHHHHHHH-HCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSG
T ss_pred chhhHHHHHHHHHHHHHHh-cCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccch
Confidence 8999999972 11146788999988 89 999887 9999999999999999999977 33221 11
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhc-CCChh
Q 043646 281 LRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN-GGTPQ 358 (625)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~-~gt~~ 358 (625)
....+. .+|++++| |.+++. ..+|++++++++. +.+.+.. ..+.+ ..... .+.+.
T Consensus 270 ~~~~~~-~~di~t~s--K~l~~G~~~ig~~~~~~~i~--~~~~~~~-~~~~~-----------------~~~~t~~~~~~ 326 (452)
T 3n5m_A 270 FMNYDV-KPDIITMA--KGITSAYLPLSATAVKREIY--EAFKGKG-EYEFF-----------------RHINTFGGNPA 326 (452)
T ss_dssp GGGTTC-CCSEEEEC--GGGGTTSSCCEEEEEEHHHH--GGGCSSS-TTCSC-----------------CCCCSSTTCHH
T ss_pred hhhcCC-CCCEEeec--ccccCCCcceEEEEECHHHH--HHHhhcc-CCCCc-----------------cccCCCCCCHH
Confidence 111111 46877765 988764 5689999999883 2221100 00000 00000 11222
Q ss_pred HHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCC
Q 043646 359 IVQMIRAALAFWVKEYIG-YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKP 437 (625)
Q Consensus 359 ~~~~~~aal~~~~~~~~g-~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~ 437 (625)
......++++.. +... .+.+.+....+.+.+.+.+..+|.+..+.+ .+.++.+.+..+.. ....
T Consensus 327 ~~aaa~aal~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~i~~~~~~~---------~~~~ 391 (452)
T 3n5m_A 327 ACALALKNLEII--ENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRG----KGLLVGIELVNDKE---------TKEP 391 (452)
T ss_dssp HHHHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEE----SSSCEEEEEEEETT---------TTEE
T ss_pred HHHHHHHHHHHH--HhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEE----EEEEEEEEEecCCc---------ccCC
Confidence 222223444443 2222 334444444444455544556666654433 23445544432110 0001
Q ss_pred CC---hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHH
Q 043646 438 LH---GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILA 514 (625)
Q Consensus 438 l~---~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~ 514 (625)
++ ...+++.|.+ .||.++++..|... .++++||++++.+|++|++++++
T Consensus 392 ~~~~~~~~~~~~l~~-~Gv~~~~~~~~~~~---------------------------~~~~iRi~~~~~~t~e~i~~~l~ 443 (452)
T 3n5m_A 392 IDNDKIASVVNACKE-KGLIIGRNGMTTAG---------------------------YNNILTLAPPLVISSEEIAFVIG 443 (452)
T ss_dssp CCHHHHHHHHHHHHH-TTEECEECTTSSTT---------------------------CCCEEEECCCTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-CCcEEeecCcccCC---------------------------CCCEEEEECCCCCCHHHHHHHHH
Confidence 11 1357777765 69999987655311 24899999999999999999999
Q ss_pred HHHHHHHh
Q 043646 515 ALEFIAAY 522 (625)
Q Consensus 515 aL~~~~~~ 522 (625)
+|++++.+
T Consensus 444 ~l~~~l~~ 451 (452)
T 3n5m_A 444 TLKTAMER 451 (452)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99988753
No 198
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.85 E-value=1.7e-18 Score=187.24 Aligned_cols=333 Identities=14% Similarity=0.142 Sum_probs=197.3
Q ss_pred eEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
..|+|..+ .+..++.|.+++.+.+.... +.... + ..+...++++++++++|. + +|+|+++|+.
T Consensus 65 ~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~-~~~~~-~-----~~~~~~~l~~~la~~~g~--~-~v~~~~sGse- 133 (433)
T 1z7d_A 65 KRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLT-ICSRA-F-----FSVPLGICERYLTNLLGY--D-KVLMMNTGAE- 133 (433)
T ss_dssp CEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCS-CCCTT-S-----EEHHHHHHHHHHHHHHTC--S-EEEEESSHHH-
T ss_pred CEEEEcccchhhcccCCCCHHHHHHHHHHHHhCC-CccCC-c-----CCHHHHHHHHHHHhhcCC--C-eEEEeCCHHH-
Confidence 45888655 22367899999999886532 21111 1 234567788999999974 3 7999855555
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCC-CceEEEEcCCC-CchhHHHHHHcC------------CeEEEEecCCCCCCC
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDE-ERWVVFLGPYE-HHSNLLSWRQSL------------AEVVEIGLDDNGLLD 217 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~-h~s~~~~~~~~G------------~~vv~v~~~~~~~ld 217 (625)
++..++.++... .....++.+| ++ |++.... |.+....+...| ..++.+|.+ |
T Consensus 134 A~~~al~~a~~~------~~~~~g~~~gr~~--vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d 200 (433)
T 1z7d_A 134 ANETAYKLCRKW------GYEVKKIPENMAK--IVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD-----D 200 (433)
T ss_dssp HHHHHHHHHHHH------HHHTSCCCTTCCE--EEEETTC--------------------------CEEEECTT-----C
T ss_pred HHHHHHHHHHHH------hhhccCCCCCCCe--EEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCC-----C
Confidence 455555443100 0000012456 54 5555544 444443343333 345556543 8
Q ss_pred HHHHHHHHHHhhhCCCCeEEEEecccCcccccc----CHHHHHHHHHHcCCEEEEeccCc-CCCcc--ccCCCCCCCCCc
Q 043646 218 IEALRSQLELYKAAKRPMLGSFSACSNVTGIYS----DTRSIARLLHQYGGFACFDFAAS-GPYVK--INLRSRNIDGYD 290 (625)
Q Consensus 218 ~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~----~l~~I~~la~~~g~~vivD~A~~-~g~~~--id~~~~~~~~~D 290 (625)
+++|+++++. +++++|+++.+++++|.+. ++++|.++|++||+++|+|++++ ++... ..+...+. .+|
T Consensus 201 ~~~le~~l~~----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~-~~d 275 (433)
T 1z7d_A 201 LEALEEELKD----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNV-KPD 275 (433)
T ss_dssp HHHHHHHHTS----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCS
T ss_pred HHHHHHHhCC----CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCC-CCC
Confidence 9999999952 5788999888888899876 79999999999999999999986 22211 11111111 578
Q ss_pred EEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHH
Q 043646 291 AIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAF 369 (625)
Q Consensus 291 ~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~ 369 (625)
+++ ++|++++. ..+|++++++++ .+.+.+...+ .+ + .+++.......++++.
T Consensus 276 i~t--~sK~l~~G~~~~G~v~~~~~~--~~~l~~~~~~-~t---------------------~-~~~~~~~aaa~aal~~ 328 (433)
T 1z7d_A 276 VIL--LGKALSGGHYPISAVLANDDI--MLVIKPGEHG-ST---------------------Y-GGNPLAASICVEALNV 328 (433)
T ss_dssp EEE--ECGGGGTTSSCCEEEEECHHH--HTTCCTTCCC-CT---------------------T-TTCHHHHHHHHHHHHH
T ss_pred EEE--ECccccCCCCCeEEEEECHHH--Hhhhcccccc-cc---------------------C-CCCHHHHHHHHHHHHH
Confidence 875 45999853 248999999887 3344321100 00 0 1223222233444554
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHhhCC----CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHH
Q 043646 370 WVKEYIGYEVIKKQEDVYIESALGRILP----NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVAT 445 (625)
Q Consensus 370 ~~~~~~g~~~i~~~~~~l~~~l~~~L~~----l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 445 (625)
+. . +.+.++.+++.+++.+.|.+ ++.+....+ .+.++.+.+... ..+...+.+
T Consensus 329 ~~--~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~----~g~~~~i~~~~~--------------~~~~~~~~~ 385 (433)
T 1z7d_A 329 LI--N---EKLCENAEKLGGPFLENLKRELKDSKIVRDVRG----KGLLCAIEFKNE--------------LVNVLDICL 385 (433)
T ss_dssp HH--H---TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEE----ETTEEEEEECTT--------------TCCHHHHHH
T ss_pred HH--h---ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe----eeeEEEEEEccC--------------hhHHHHHHH
Confidence 42 1 23455666677777777654 344332221 345555544321 013567888
Q ss_pred HhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 446 LFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 446 ~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.|.+ .||.++++. ++++||++++.+|++|+++++++|++++.+.
T Consensus 386 ~l~~-~Gv~v~~~~---------------------------------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 429 (433)
T 1z7d_A 386 KLKE-NGLITRDVH---------------------------------DKTIRLTPPLCITKEQLDECTEIIVKTVKFF 429 (433)
T ss_dssp HHHH-TTEECCEET---------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-CCeEEecCC---------------------------------CCEEEEECCcCCCHHHHHHHHHHHHHHHHHH
Confidence 8865 699997530 3789999999999999999999999987653
No 199
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.84 E-value=7.6e-19 Score=190.83 Aligned_cols=353 Identities=10% Similarity=0.008 Sum_probs=205.2
Q ss_pred eEeccCC------CCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHT------ASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~------~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
..|+|.. ..+..++.|.+++.+.+.... .+.. .....+...++++.++++++.+.+ +|+|| +|.++
T Consensus 50 ~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~--~~~~----~~~~~~~~~~l~~~la~~~~~~~~-~v~~~-~ggse 121 (449)
T 3a8u_X 50 RKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD--YSPG----FQYGHPLSFQLAEKITDLTPGNLN-HVFFT-DSGSE 121 (449)
T ss_dssp CEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS--CCCS----SSCCCHHHHHHHHHHHTTSSTTEE-EEEEE-SSHHH
T ss_pred CEEEECCccHhhccCCCCCHHHHHHHHHHHHhCC--Cccc----cccCCHHHHHHHHHHHHhCCCCCC-EEEEc-CcHHH
Confidence 3588875 344568899999999886532 1110 011234566788999999987655 89999 45555
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEE-cCCCCchhHHHHHHcCC------------eEEEEecCCCC----
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFL-GPYEHHSNLLSWRQSLA------------EVVEIGLDDNG---- 214 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv-~~~~h~s~~~~~~~~G~------------~vv~v~~~~~~---- 214 (625)
++..++.++.... +. .+-.++++ |++ .+.+|.+....+...|. .++.++.+...
T Consensus 122 a~~~al~~~~~~~----~~---~g~~~~~~--vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 192 (449)
T 3a8u_X 122 CALTAVKMVRAYW----RL---KGQATKTK--MIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAY 192 (449)
T ss_dssp HHHHHHHHHHHHH----HH---TTCTTCCE--EEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTT
T ss_pred HHHHHHHHHHHHH----Hh---cCCCCCCE--EEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCcc
Confidence 5666665541000 00 00014454 555 55555555545554442 35566543211
Q ss_pred -CCC--------HHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc--
Q 043646 215 -LLD--------IEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK-- 278 (625)
Q Consensus 215 -~ld--------~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~-- 278 (625)
.+| +++|+++|++. ..+++++|+++..+|+||.+.| +++|.++|++||+++|+|++++ ++...
T Consensus 193 ~~~d~~~~~~~~~~~le~~l~~~-~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~ 271 (449)
T 3a8u_X 193 SRGMPKEGGIALADELLKLIELH-DASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSM 271 (449)
T ss_dssp CSSSCSSSHHHHHHHHHHHHHHH-CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred ccCChHHHHHHHHHHHHHHHHhc-CCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcc
Confidence 246 99999999742 0125688888877788999888 9999999999999999999984 55321
Q ss_pred ccCCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCCh
Q 043646 279 INLRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTP 357 (625)
Q Consensus 279 id~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~ 357 (625)
..+...+. .+|++++ +|+|++. ..+|++++++++.. .+.+...+... .........+.+
T Consensus 272 ~~~~~~~~-~~di~s~--sK~l~~G~~~~G~~~~~~~~~~--~l~~~~~~~~~---------------~~~~~~~t~~~~ 331 (449)
T 3a8u_X 272 FGADSFGV-TPDLMCI--AKQVTNGAIPMGAVIASTEIYQ--TFMNQPTPEYA---------------VEFPHGYTYSAH 331 (449)
T ss_dssp SHHHHHTC-CCSEEEE--CGGGGTTSSCCEEEEEEHHHHH--HHHTCSSCTTS---------------CSSCCCCTTTTC
T ss_pred hhhhhcCC-CCCEEEE--cccccCCCCceEEEEECHHHHH--HhhccCccccc---------------ccccccCCCccc
Confidence 11111111 4687754 5999751 12899999987632 22110000000 000000011112
Q ss_pred hH-HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC---CcEEEeCCCCCCCcceEEEEeccCCCCCCcccccc
Q 043646 358 QI-VQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN---QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIE 433 (625)
Q Consensus 358 ~~-~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l---~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~ 433 (625)
++ ...+.++++.+ +. +.+.++.+++.+++++.|.++ +.+....+ .+.++.+.+.....
T Consensus 332 ~~~~aa~~aal~~~--~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~----~g~~~~i~~~~~~~--------- 393 (449)
T 3a8u_X 332 PVACAAGLAALCLL--QK---ENLVQSVAEVAPHFEKALHGIKGAKNVIDIRN----FGLAGAIQIAPRDG--------- 393 (449)
T ss_dssp HHHHHHHHHHHHHH--HH---TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEE----ETTEEEEEECCBTT---------
T ss_pred HHHHHHHHHHHHHH--Hh---cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEee----eEEEEEEEEecCcc---------
Confidence 22 22223445443 21 245667777788888887664 33322211 33455554432110
Q ss_pred CCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHH
Q 043646 434 RNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFIL 513 (625)
Q Consensus 434 ~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll 513 (625)
....+..++.+.|.+ +||.++++ .+++||++++.++++|+++++
T Consensus 394 -~~~~~~~~~~~~l~~-~Gv~v~~~----------------------------------g~~iRis~~~~~t~~~i~~~l 437 (449)
T 3a8u_X 394 -DAIVRPFEAGMALWK-AGFYVRFG----------------------------------GDTLQFGPTFNSKPQDLDRLF 437 (449)
T ss_dssp -BSSHHHHHHHHHHHH-HTEECEEE----------------------------------TTEEEECCCTTCCHHHHHHHH
T ss_pred -cccccHHHHHHHHHH-CCcEEecC----------------------------------CCEEEEECCCcCCHHHHHHHH
Confidence 000012358888865 69999854 167999999999999999999
Q ss_pred HHHHHHHHh
Q 043646 514 AALEFIAAY 522 (625)
Q Consensus 514 ~aL~~~~~~ 522 (625)
++|++++.+
T Consensus 438 ~~l~~~l~~ 446 (449)
T 3a8u_X 438 DAVGEVLNK 446 (449)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 200
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.84 E-value=2.2e-19 Score=193.86 Aligned_cols=362 Identities=13% Similarity=0.051 Sum_probs=191.7
Q ss_pred EeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 79 TYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 79 ~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
-|+|..++ |..++.|.+++.+.+.... ..+. .....+...+++++++++++.+.+ +|+|| +|.+++
T Consensus 30 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~-----~~~~~~~~~~l~~~la~~~~~~~~-~v~~~-~gg~ea 101 (430)
T 3i4j_A 30 RYLDGSSGALVANIGHGRAEVGERMAAQAARLP-FVHG-----SQFSSDVLEEYAGRLARFVGLPTF-RFWAV-SGGSEA 101 (430)
T ss_dssp EEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCC-CCCT-----TTCEEHHHHHHHHHHHHHTTCTTC-EEEEE-SSHHHH
T ss_pred EEEECCCchhccccCCCCHHHHHHHHHHHHhcc-cccc-----cccCCHHHHHHHHHHHHhCCCCCC-EEEEe-CcHHHH
Confidence 47887654 3348899999988875321 1111 011234567888999999998766 89998 455555
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHc-CC--------------eEEEEecCCC---C
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQS-LA--------------EVVEIGLDDN---G 214 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~-G~--------------~vv~v~~~~~---~ 214 (625)
+..++.++... .+. .+-.+++ .|++....|+......... +. .+..++.+.. +
T Consensus 102 ~~~al~~~~~~----~~~---~g~~~~~--~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (430)
T 3i4j_A 102 TESAVKLARQY----HVE---RGEPGRF--KVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNG 172 (430)
T ss_dssp HHHHHHHHHHH----HHH---TTCTTCC--EEEEETTC-------------------------CGGGSCEECCCCTTSCH
T ss_pred HHHHHHHHHHH----HHh---cCCCCCc--EEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchh
Confidence 55555443100 000 0001233 3666555555543332222 21 3334443322 2
Q ss_pred CCCHHHHHHHHHHhhhCCCCeEEEEecccC-ccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc--ccCCCC-C
Q 043646 215 LLDIEALRSQLELYKAAKRPMLGSFSACSN-VTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK--INLRSR-N 285 (625)
Q Consensus 215 ~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n-~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~--id~~~~-~ 285 (625)
..|+++|++++++. ..+++++|+++.++| ++|.+.+ +++|.++|++||+++|+|++++ ++... ...... +
T Consensus 173 ~~~~~~le~~l~~~-~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~ 251 (430)
T 3i4j_A 173 AEDAEGLRALLERE-GPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSG 251 (430)
T ss_dssp HHHHTHHHHHHHHH-CGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTT
T ss_pred hHHHHHHHHHHHhc-CCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcC
Confidence 34678999999742 113567888888888 9999877 9999999999999999999977 33221 111111 1
Q ss_pred CCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhc-CCChhHHHHH
Q 043646 286 IDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN-GGTPQIVQMI 363 (625)
Q Consensus 286 ~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~ 363 (625)
..+|++++| |.+++. ..+|++++++++.+ .+.+.. ..+ ..... .+++......
T Consensus 252 -~~~di~t~s--K~l~~G~~r~G~~~~~~~i~~--~~~~~~---~~~-----------------~~~~t~~~~~~~~aaa 306 (430)
T 3i4j_A 252 -VTPDIAVLG--KGLAAGYAPLAGLLAAPQVYE--TVMGGS---GAF-----------------MHGFTYAGHPVSVAAG 306 (430)
T ss_dssp -CCCSEEEEC--GGGTTTSSCCEEEEECHHHHH--HHHHTT---CBC-----------------CCCCTTTTCHHHHHHH
T ss_pred -CCCcEEEEc--ccccCCccccEEEEECHHHHH--HHhccC---Ccc-----------------cccCCCCCCHHHHHHH
Confidence 146777765 999853 34799999888732 111100 000 00000 1112222222
Q ss_pred HHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHH
Q 043646 364 RAALAFWVKEYIG-YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPF 442 (625)
Q Consensus 364 ~aal~~~~~~~~g-~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~ 442 (625)
.++++.. +... .+.+.+....+.+.+.+.+..+|++..+.+ .+.++.+......... .-...-...+
T Consensus 307 ~aal~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~------~~~~~~~~~~ 374 (430)
T 3i4j_A 307 LSVLDIV--EREDLTGAAKERGAQLLAGLQALQARFPQMMQVRG----TGLLLGVVLGDLATGQ------AFETPGIASR 374 (430)
T ss_dssp HHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE----ETTEEEEEEC------------------CHHH
T ss_pred HHHHHHH--HcccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE----EEEEEEEEeccccccC------CCccHHHHHH
Confidence 3344443 1111 233333344444444444445566665543 2345555443211000 0000011356
Q ss_pred HHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 443 VATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 443 v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+.+.|.+ .||.++++..+..+ ..++++||++++..+++++++++++|++++.+
T Consensus 375 ~~~~l~~-~Gv~v~~~~~~~~~--------------------------~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 427 (430)
T 3i4j_A 375 IGAAALK-RGLITYPGSGAEPN--------------------------GRGDHLLLGPPLSITAAEVDGLLALLAGALED 427 (430)
T ss_dssp HHHHHHH-TTEECC-------------------------------------CEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCEEEecccccCC--------------------------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 8888865 79999876332211 02478999999999999999999999998765
No 201
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.83 E-value=9.1e-21 Score=202.40 Aligned_cols=247 Identities=12% Similarity=0.062 Sum_probs=165.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHH-HHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCch
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTT-AAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHS 193 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtt-aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s 193 (625)
.++....+.+.+..++.+++|.+.....+++ +|+| .++..++.+.. +. ..+++ .|+++...|.|
T Consensus 92 ~~~~~~~~e~~~~~~~~~~lGlp~~~~~~lV-~GaT~~~~a~~L~aar--------~~----~~~~~--~viv~r~aHkS 156 (450)
T 3bc8_A 92 GSSLLNKITNSLVLNVIKLAGVHSVASCFVV-PMATGMSLTLCFLTLR--------HK----RPKAK--YIIWPRIDQKS 156 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCCEEEEE-SSCHHHHHHHHHHHHH--------HH----CTTCC--EEEEECCCCHH
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCCCceEEEE-CCHHHHHHHHHHHHcc--------hh----hcCCC--EEEEECCcHHH
Confidence 4455667888999999999999866555777 5665 44444444331 11 12244 48888999999
Q ss_pred hHHHHHHcCCeEEEEec---CCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEec
Q 043646 194 NLLSWRQSLAEVVEIGL---DDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 194 ~~~~~~~~G~~vv~v~~---~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~ 270 (625)
+.+++...|+.++.|+. ++.+.+|+++|+++|+++. .+.+.+|+.+..++.+|.+.|+++|+++||+||+|+|||+
T Consensus 157 v~kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~-~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~ 235 (450)
T 3bc8_A 157 CFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELG-PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNN 235 (450)
T ss_dssp HHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHC-GGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcC-CCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEEC
Confidence 99999999999888865 4467899999999998641 1234555555555557799999999999999999999999
Q ss_pred cCcCCCcccc-C--CCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccc
Q 043646 271 AASGPYVKIN-L--RSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLED 347 (625)
Q Consensus 271 A~~~g~~~id-~--~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (625)
||++-...+. + ..+..+++|+++.|+|||++.|.+.+++++++... ++.....+.|.
T Consensus 236 A~G~~~~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~-~~~~~~~~~g~------------------- 295 (450)
T 3bc8_A 236 AYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPF-IQDISKMYPGR------------------- 295 (450)
T ss_dssp TTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHH-HHHHHHHSCSC-------------------
T ss_pred CCchhhhhhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHH-HHHHHHHhhcC-------------------
Confidence 9886433221 1 10001378999999999999999989999864431 11111111110
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC---cEEEeCC
Q 043646 348 IEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ---NIQVLGN 406 (625)
Q Consensus 348 ~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~---gv~v~~~ 406 (625)
..+.|+ +.+ ...+......|++.+.++..++++++++.|++++ +.++++.
T Consensus 296 -----~s~Sps-L~l---~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~ 348 (450)
T 3bc8_A 296 -----ASASPS-LDV---LITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQT 348 (450)
T ss_dssp -----BCSHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCC
T ss_pred -----CcccHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCC
Confidence 111222 111 1111111334555666677788999999998887 8888764
No 202
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.83 E-value=3e-19 Score=194.14 Aligned_cols=343 Identities=10% Similarity=0.001 Sum_probs=199.6
Q ss_pred eEeccCCC------CCcchHHHH-H-HHHH---hhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC-CCCCCcEEEe
Q 043646 78 LTYADHTA------SGRSLRYIE-D-YIIN---NVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG-GGQADAIIFC 145 (625)
Q Consensus 78 ~~Yld~~~------~~~~p~~v~-e-a~~~---~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g-~~~~~~vift 145 (625)
..|+|..+ .+..++.|. + ++.+ .+.... +.. . ....+...++++.++++++ .+.+ +|+||
T Consensus 54 ~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~---~~~-~---~~~~~~~~~la~~la~~~~~~~~~-~v~~~ 125 (449)
T 2cjg_A 54 RRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNK---PSN-S---DVYSVAMARFVETFARVLGDPALP-HLFFV 125 (449)
T ss_dssp CEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCC---CCT-T---TCCCHHHHHHHHHHHHHHCCTTCC-EEEEE
T ss_pred cEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcC---CCC-c---ccCCHHHHHHHHHHHHhcCCCCCC-EEEEe
Confidence 46888733 344678999 8 9988 664321 111 0 0123456778889999997 3344 89999
Q ss_pred CChHHHHHHHHHHHh-cccccchhhhhhhhccCC-CCceEEEEcCCCCchhHHH-HHH--------cCC-----eEEEEe
Q 043646 146 GAGTTAAIKRLQEVM-GITVPSIMRDKLITSLRD-EERWVVFLGPYEHHSNLLS-WRQ--------SLA-----EVVEIG 209 (625)
Q Consensus 146 ~sGttaal~~l~~~l-~~~~~~~~~~~~~~~l~~-gd~~~Vlv~~~~h~s~~~~-~~~--------~G~-----~vv~v~ 209 (625)
++|+.+ +..++.+. .... . +......-++ +++ |++....|++.... +.. .+. .++.+|
T Consensus 126 ~~gseA-~~~aik~a~~~~~-~--~~~~~~~~~~~~~~--Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (449)
T 2cjg_A 126 EGGALA-VENALKAAFDWKS-R--HNQAHGIDPALGTQ--VLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAP 199 (449)
T ss_dssp SSHHHH-HHHHHHHHHHHHH-H--HHHHTTSCTTCCCE--EEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCC
T ss_pred CchHHH-HHHHHHHHHHHhc-c--cccccccccCCCCE--EEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEc
Confidence 555554 54444322 1000 0 0000000012 554 66665544443222 121 122 566666
Q ss_pred cCC--CC--------CCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-C
Q 043646 210 LDD--NG--------LLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-G 274 (625)
Q Consensus 210 ~~~--~~--------~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~ 274 (625)
.+. .. ..++++|++++++. .+++++|+++.++|++|.+.+ +++|.++|++||+++|+|++|+ +
T Consensus 200 ~~d~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~ 277 (449)
T 2cjg_A 200 YMRPGLDEPAMAALEAEALRQARAAFETR--PHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGC 277 (449)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHS--TTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred CCCchhhccccchhhHHHHHHHHHHHHhc--CCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCC
Confidence 643 11 24567788888631 257899999988899998777 9999999999999999999988 4
Q ss_pred CCccc--cCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhh
Q 043646 275 PYVKI--NLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE 352 (625)
Q Consensus 275 g~~~i--d~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~ 352 (625)
+.... .....+. .+|++++| |+| | +|++++++++ .+.+.+...+.+. ...
T Consensus 278 g~~g~~~~~~~~~~-~~di~t~s--K~l--~--iG~~~~~~~~--~~~l~~~~~~~~~-------------------~~~ 329 (449)
T 2cjg_A 278 GLTGTAWAYQQLDV-APDIVAFG--KKT--Q--VCGVMAGRRV--DEVADNVFAVPSR-------------------LNS 329 (449)
T ss_dssp TTTSSSSTHHHHTC-CCSEEEEC--GGG--S--SEEEEECGGG--GGSTTCTTTSTTS-------------------SCC
T ss_pred CccCcceeecccCC-CceEEEec--Ccc--c--EEEEEECHHH--hhhhhhcccCCcc-------------------ccc
Confidence 33211 1111111 56887665 998 4 6999999887 3333321111000 000
Q ss_pred c-CCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC----CCc-EEEeCCCCCCCcceEEEEeccCCCCC
Q 043646 353 N-GGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP----NQN-IQVLGNTSVKRQAILSFLVYSTTNSS 426 (625)
Q Consensus 353 ~-~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~----l~g-v~v~~~~~~~~~~i~~f~~~~~~~~~ 426 (625)
. .+.+.......++++... . +.+.++.+.+++++++.|.+ ++. +....+ .+.++.+.+...
T Consensus 330 t~~~n~~~~~aa~aal~~~~--~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~----~g~~~~~~~~~~---- 396 (449)
T 2cjg_A 330 TWGGNLTDMVRARRILEVIE--A---EGLFERAVQHGKYLRARLDELAADFPAVVLDPRG----RGLMCAFSLPTT---- 396 (449)
T ss_dssp SSSSCHHHHHHHHHHHHHHH--H---HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEE----ETTEEEEECSSH----
T ss_pred CCCCCHHHHHHHHHHHHHHH--h---ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEee----ccEEEEEEECCh----
Confidence 0 122222222234454432 1 34566777778888887764 344 443322 345555533210
Q ss_pred CccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCH
Q 043646 427 PENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSN 506 (625)
Q Consensus 427 ~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~ 506 (625)
....++++.|.+ +||.++++. ++++||++++.+|+
T Consensus 397 -----------~~~~~~~~~l~~-~Gv~v~~~g---------------------------------~~~iRi~~~~~~t~ 431 (449)
T 2cjg_A 397 -----------ADRDELIRQLWQ-RAVIVLPAG---------------------------------ADTVRFRPPLTVST 431 (449)
T ss_dssp -----------HHHHHHHHHHHH-TTEECEEET---------------------------------TTEEEECCCTTCCH
T ss_pred -----------HHHHHHHHHHHH-CCeEEecCC---------------------------------CCEEEEECCCCCCH
Confidence 013568888865 799998541 37899999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 043646 507 EEFEFILAALEFIAAY 522 (625)
Q Consensus 507 edid~ll~aL~~~~~~ 522 (625)
+|+++++++|++++..
T Consensus 432 e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 432 AEIDAAIAAVRSALPV 447 (449)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 203
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.83 E-value=1.5e-18 Score=188.92 Aligned_cols=340 Identities=13% Similarity=0.042 Sum_probs=206.5
Q ss_pred EeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 79 TYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 79 ~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
-|+|..++ |..++.|.+++.+.+........ +....+...+++++++++++.+.+ .|+|+++|+.+
T Consensus 76 ~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~------~~~~~~~~~~L~e~la~~~~~~~~-~v~~~~sGseA- 147 (457)
T 3tfu_A 76 EVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMF------GGLTHEPAARLAKLLVDITPAGLD-TVFFSDSGSVS- 147 (457)
T ss_dssp EEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCS------SSEECHHHHHHHHHHHHHSSTTEE-EEEEESSHHHH-
T ss_pred EEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCccc------cccCCHHHHHHHHHHHHhCCCCcC-EEEEeCcHHHH-
Confidence 68887653 45688999999888854311110 111234567899999999987665 89999555555
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHc-------------CCeEEEEecCC--CCCCC
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQS-------------LAEVVEIGLDD--NGLLD 217 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~-------------G~~vv~v~~~~--~~~ld 217 (625)
+..++.++... .+. .-.+|+..+|+..+..|.....+.... ...+..++... .+..|
T Consensus 148 ~~~Alk~a~~~----~~~----~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d 219 (457)
T 3tfu_A 148 VEVAAKMALQY----WRG----RGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAY 219 (457)
T ss_dssp HHHHHHHHHHH----HHH----TTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHH
T ss_pred HHHHHHHHHHH----HHh----cCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHH
Confidence 55444433100 000 001455434444555555544333221 12334444432 22358
Q ss_pred HHHHHHHHHHhhhCCCCeEEEEec-ccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCccc--cCCCCCCCCC
Q 043646 218 IEALRSQLELYKAAKRPMLGSFSA-CSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVKI--NLRSRNIDGY 289 (625)
Q Consensus 218 ~~~L~~~l~~~~~~~~~~lv~~~~-~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~i--d~~~~~~~~~ 289 (625)
+++|+++|+++ .+++++|+++. ++|++|.+.+ +++|.++|++||+++|+|+++. +|.... .....+. .+
T Consensus 220 ~~~le~~l~~~--~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~-~p 296 (457)
T 3tfu_A 220 SAAFEAQLAQH--AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGV-SP 296 (457)
T ss_dssp HHHHHHHHHHH--GGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CC
T ss_pred HHHHHHHHHhC--CCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCC-Cc
Confidence 89999999742 24688999999 9999999877 8999999999999999999976 332211 1111111 56
Q ss_pred cEEEEcCCCCCCCCC-CceEEEEeccccccCCC---CC--cccCCceEEeeccccccccccccchhhhhcCCChhHHHHH
Q 043646 290 DAIFLATHKFLGGPG-TPGILLISKALYQLGSS---PP--STCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI 363 (625)
Q Consensus 290 D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~---~p--~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 363 (625)
|++++| |.+++.. .+|++++++++.+ .+ .+ ...+ .+ ..+.+......
T Consensus 297 diit~s--K~l~gG~~~lG~v~~~~~i~~--~~~~~~~~~~~~~-~t----------------------~~~n~~a~aaa 349 (457)
T 3tfu_A 297 DIMCVG--KALTGGYLSLAATLCTADVAH--TISAGAAGALMHG-PT----------------------FMANPLACAVS 349 (457)
T ss_dssp SEEEEC--GGGGTTSSCCEEEEEEHHHHH--HHHHSSSCSCCCC-CT----------------------TTTCHHHHHHH
T ss_pred eEEEEC--hhhhCCCcceEEEEEcHHHHH--HhhccCCCceeEe-cC----------------------CCcCHHHHHHH
Confidence 888655 9998752 5899999988732 11 01 0110 00 01222222233
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC---CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCCh
Q 043646 364 RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN---QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHG 440 (625)
Q Consensus 364 ~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l---~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~ 440 (625)
.++++.+ +. +.+.++.+++.+++++.|.++ +++..+.. .+.++.+.+..+ .+.
T Consensus 350 ~aaL~~~--~~---~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~----~G~~~~i~l~~~---------------~~~ 405 (457)
T 3tfu_A 350 VASVELL--LG---QDWRTRITELAAGLTAGLDTARALPAVTDVRV----CGAIGVIECDRP---------------VDL 405 (457)
T ss_dssp HHHHHHH--HT---SCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEE----CSSCEEEEESSC---------------CCH
T ss_pred HHHHHHH--hh---hHHHHHHHHHHHHHHHHHHHHhcCCCeeeeec----CCeEEEEEECCc---------------ccH
Confidence 3445544 22 234556666777777777653 55543322 234555544321 235
Q ss_pred HHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 441 PFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 441 ~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.++.+.|.+ .||.+++. .+++||++++..|++|+++++++|++++
T Consensus 406 ~~~~~~l~~-~Gv~v~~~----------------------------------~~~lRi~p~~~~t~eei~~~l~~L~~~l 450 (457)
T 3tfu_A 406 AVATPAALD-RGVWLRPF----------------------------------RNLVYAMPPYICTPAEITQITSAMVEVA 450 (457)
T ss_dssp HHHHHHHHH-TTEECCCB----------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCeEEEec----------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 678888876 59998741 2679999999999999999999999998
Q ss_pred Hhh
Q 043646 521 AYG 523 (625)
Q Consensus 521 ~~~ 523 (625)
.+.
T Consensus 451 ~~~ 453 (457)
T 3tfu_A 451 RLV 453 (457)
T ss_dssp HHC
T ss_pred HHh
Confidence 764
No 204
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.83 E-value=3e-18 Score=186.86 Aligned_cols=354 Identities=14% Similarity=0.041 Sum_probs=206.5
Q ss_pred EeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 79 TYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 79 ~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
-|+|..++ |..++.|.+++.+.+...... ++ ......+...+++++++++++.+.+ .|+||+ |.+++
T Consensus 52 ~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~-~~----~~~~~~~~~~~la~~l~~~~~~~~~-~v~~~~-gGseA 124 (460)
T 3gju_A 52 KSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYY-HA----YVGHGTEASITLAKMIIDRAPKGMS-RVYFGL-SGSDA 124 (460)
T ss_dssp EEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCC-CC----CTTCCCHHHHHHHHHHHHHSCTTEE-EEEEES-SHHHH
T ss_pred EEEECCcchhhccCCCCCHHHHHHHHHHHHhcccc-cc----ccccCCHHHHHHHHHHHhhCCCCcC-EEEEeC-chHHH
Confidence 48886544 456789999998877532100 10 0111234567889999999876665 899985 44554
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC------------CeEEEEecCC-----CCC
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL------------AEVVEIGLDD-----NGL 215 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G------------~~vv~v~~~~-----~~~ 215 (625)
+..++.++... .... -++++..+|+..+..|.....+....| ..+..++... +..
T Consensus 125 ~~~al~~~~~~-------~~~~-g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 196 (460)
T 3gju_A 125 NETNIKLIWYY-------NNVL-GRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRS 196 (460)
T ss_dssp HHHHHHHHHHH-------HHHT-TCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTT
T ss_pred HHHHHHHHHHH-------HHhc-CCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccc
Confidence 55554443100 0000 013333244445555555544443322 2455666432 111
Q ss_pred CC--------HHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc--cc
Q 043646 216 LD--------IEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK--IN 280 (625)
Q Consensus 216 ld--------~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~--id 280 (625)
++ +++|++++++. ..+++++|+++.++|++|.+.+ +++|.++|++||+++|+|++++ +|... ..
T Consensus 197 ~~~~~~~~~~~~~le~~i~~~-~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~ 275 (460)
T 3gju_A 197 MSEEQFSQHCADKLEEMILAE-GPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFG 275 (460)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCH
T ss_pred cChhHHHHHHHHHHHHHHHhc-CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccch
Confidence 23 68899888741 1135789999998999998776 9999999999999999999987 43221 11
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCC-------CcccCCceEEeeccccccccccccchhhhh
Q 043646 281 LRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSP-------PSTCGGGTVNYVNAFDEKDTLYLEDIEERE 352 (625)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~-------p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~ 352 (625)
....+. .+|++++| |.+++. ..+|++++++++.. .+. +...+ .+
T Consensus 276 ~~~~~~-~pdi~t~s--K~l~gG~~~lg~v~~~~~i~~--~~~~~~~~~~~~~~~-~t---------------------- 327 (460)
T 3gju_A 276 SDHYGI-KPDLITIA--KGLTSAYAPLSGVIVADRVWQ--VLVQGSDKLGSLGHG-WT---------------------- 327 (460)
T ss_dssp HHHHTC-CCSEEEEC--GGGTTTSSCCEEEEEEHHHHH--HHHHHHHHHCSCSCC-CT----------------------
T ss_pred HhhcCC-CCCeeeee--hhhcCCCCCeEEEEECHHHHH--HHhcccccccccccC-CC----------------------
Confidence 111111 56888765 999864 35799999988732 210 00000 00
Q ss_pred cCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccc
Q 043646 353 NGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKI 432 (625)
Q Consensus 353 ~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~ 432 (625)
..+.+.......++++... +..-.+.+.+....+.+.+.+.+.+.+.+..+.+ .+.++.+.+..+..
T Consensus 328 ~~~~~~~~aaa~aal~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~g~~~~~~~~~~~~-------- 394 (460)
T 3gju_A 328 YSAHPICVAAGVANLELID-EMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRG----DGMLAAVEFVADKD-------- 394 (460)
T ss_dssp TTTCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEE----ETTEEEEEECSBTT--------
T ss_pred CCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEee----eeEEEEEEEccCcc--------
Confidence 0122222222234444431 1111445555555566666677777776655433 34555555543210
Q ss_pred cCCCCC-----ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHH
Q 043646 433 ERNKPL-----HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNE 507 (625)
Q Consensus 433 ~~~~~l-----~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~e 507 (625)
....+ ....+.+.|.+ +||.++++. .++++||++++..|++
T Consensus 395 -~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~--------------------------------~~~~iRi~~~~~~t~e 440 (460)
T 3gju_A 395 -DRVFFDASQKIGPQVATALAA-SGVIGRAMP--------------------------------QGDILGFAPPLCLTRE 440 (460)
T ss_dssp -TTBCCCGGGCHHHHHHHHHHH-TTEECEECS--------------------------------SSCEEEECCCTTCCHH
T ss_pred -ccccccchHHHHHHHHHHHHH-CCeEEecCC--------------------------------CCCEEEEECCCCCCHH
Confidence 00011 13467777765 699998642 1378999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 043646 508 EFEFILAALEFIAAYG 523 (625)
Q Consensus 508 did~ll~aL~~~~~~~ 523 (625)
|+++++++|++++.+.
T Consensus 441 ~i~~~l~~l~~~l~~~ 456 (460)
T 3gju_A 441 QADIVVSKTADAVKSV 456 (460)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 205
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.83 E-value=1.5e-18 Score=187.44 Aligned_cols=348 Identities=11% Similarity=0.010 Sum_probs=202.5
Q ss_pred eEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
..|+|..+. +..++.|.+++.+.+... .+... .+ ......+++++++++++.+.+ +|+|| +|+++
T Consensus 43 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~-~~-----~~~~~~~l~~~la~~~~~~~~-~v~~~-~gg~e 113 (433)
T 1zod_A 43 RAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKL-DHLFS-EM-----LSRPVVDLATRLANITPPGLD-RALLL-STGAE 113 (433)
T ss_dssp CEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHC-CCCCT-TC-----CCHHHHHHHHHHHHHSCTTCC-EEEEE-SCHHH
T ss_pred CEEEEcccchhccccCCCCHHHHHHHHHHHHhC-ccccc-cc-----CCHHHHHHHHHHHHhCCCCcC-EEEEe-CchHH
Confidence 358887433 334789999998887542 11111 11 124566788899999998665 89998 55666
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC-----------CeEEEEecCCC-------
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL-----------AEVVEIGLDDN------- 213 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G-----------~~vv~v~~~~~------- 213 (625)
++..++.++. ....+++ +|+..+.+|.+........+ ..++.++.+..
T Consensus 114 a~~~a~~~~~-------------~~~~~~~-vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 179 (433)
T 1zod_A 114 SNEAAIRMAK-------------LVTGKYE-IVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFER 179 (433)
T ss_dssp HHHHHHHHHH-------------HHHTCCE-EEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEE
T ss_pred HHHHHHHHHH-------------HhhCCCe-EEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCC
Confidence 6666665431 0112343 34444455555543333211 24555554321
Q ss_pred -----CCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCccc--cC
Q 043646 214 -----GLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVKI--NL 281 (625)
Q Consensus 214 -----~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~i--d~ 281 (625)
+.+|+++|++++++. ..+++++|+++.++|+||.+.+ +++|.++|++||+++|+|++++ ++.... .+
T Consensus 180 ~~~~~~~~d~~~le~~l~~~-~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~ 258 (433)
T 1zod_A 180 NGAYDYLAELDYAFDLIDRQ-SSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC 258 (433)
T ss_dssp TTEECHHHHHHHHHHHHHHH-CCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTH
T ss_pred chhhhHHHHHHHHHHHHHhc-CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHH
Confidence 124699999999742 1135778887777788998776 9999999999999999999988 442211 11
Q ss_pred CCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHH
Q 043646 282 RSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQ 361 (625)
Q Consensus 282 ~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 361 (625)
...+ ..+|++++ .|+|+++..+|++++++++.. .+.+.... .....+.+++..
T Consensus 259 ~~~~-~~~di~s~--sK~~~~G~~ig~~~~~~~~~~--~~~~~~~~----------------------~~~t~~~~~~~~ 311 (433)
T 1zod_A 259 QRDG-VTPDILTL--SKTLGAGLPLAAIVTSAAIEE--RAHELGYL----------------------FYTTHVSDPLPA 311 (433)
T ss_dssp HHHT-CCCSEEEE--CHHHHTTSSCEEEEECHHHHH--HHHHTTCC----------------------CCCTTTTCHHHH
T ss_pred hhcC-CCCCEEEe--cccccCCCCeeEEEEhHHHHH--hhccCCCC----------------------CCCCCCcCHHHH
Confidence 1111 14677654 599986556899999987732 11110000 000011122222
Q ss_pred -HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC----CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCC
Q 043646 362 -MIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP----NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNK 436 (625)
Q Consensus 362 -~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~----l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~ 436 (625)
...++++.+. .. .+.++.+++++++++.|.+ ++.+....+ .+.++.+.+....... ...
T Consensus 312 ~a~~aal~~~~--~~---~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~----~g~~~~i~~~~~~~~~-------~~~ 375 (433)
T 1zod_A 312 AVGLRVLDVVQ--RD---GLVARANVMGDRLRRGLLDLMERFDCIGDVRG----RGLLLGVEIVKDRRTK-------EPA 375 (433)
T ss_dssp HHHHHHHHHHH--HT---THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE----ETTEEEEEEEEETTTT-------EEC
T ss_pred HHHHHHHHHHH--hC---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE----EEEEEEEEEecCcccc-------CCC
Confidence 2234454432 22 2455666667777776654 354443322 2345554443210000 000
Q ss_pred CCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHH
Q 043646 437 PLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAAL 516 (625)
Q Consensus 437 ~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL 516 (625)
......+.+.|.+ +||.+++|..+. .++++||++++.++++|+++++++|
T Consensus 376 ~~~~~~~~~~l~~-~Gv~v~~~~~~~-----------------------------~~~~lRi~~~~~~t~~~i~~~l~~l 425 (433)
T 1zod_A 376 DGLGAKITRECMN-LGLSMNIVQLPG-----------------------------MGGVFRIAPPLTVSEDEIDLGLSLL 425 (433)
T ss_dssp TTHHHHHHHHHHH-TTEECCEECCTT-----------------------------SCCEEEECCCTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-CCCeEeccCCCC-----------------------------CCCEEEEECCcCCCHHHHHHHHHHH
Confidence 1124568888864 799998764321 1388999999999999999999999
Q ss_pred HHHHHh
Q 043646 517 EFIAAY 522 (625)
Q Consensus 517 ~~~~~~ 522 (625)
++++.+
T Consensus 426 ~~~l~~ 431 (433)
T 1zod_A 426 GQAIER 431 (433)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 206
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.82 E-value=3.9e-18 Score=185.45 Aligned_cols=347 Identities=14% Similarity=0.059 Sum_probs=197.5
Q ss_pred eEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
.-|+|..++ |..++.|.+++.+++.... +.. ......+...+++++++++++....+.|+||++|+.+
T Consensus 61 ~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~---~~~---~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA 134 (451)
T 3oks_A 61 NRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFT---HTC---FMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEA 134 (451)
T ss_dssp CEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCS---CCT---TTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHH
T ss_pred CEEEEcCCCccccccCCCCHHHHHHHHHHHHhcc---ccc---CCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHH
Confidence 458887654 3458899999999886431 110 1111234567788999999976533489999655555
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC-------------CeEEEEecCCC-----
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL-------------AEVVEIGLDDN----- 213 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G-------------~~vv~v~~~~~----- 213 (625)
+..++.+.. ..+|+..+|+.....|.....+....| ..+..++....
T Consensus 135 -~~~Alk~a~--------------~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (451)
T 3oks_A 135 -VENAVKIAR--------------SHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAE 199 (451)
T ss_dssp -HHHHHHHHH--------------HHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGG
T ss_pred -HHHHHHHHH--------------HhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccc
Confidence 444443321 012333234444555544443333222 15667766421
Q ss_pred -C-------CCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc--
Q 043646 214 -G-------LLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK-- 278 (625)
Q Consensus 214 -~-------~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~-- 278 (625)
| ..+++.+++.+.+....+++++|+++.+++..|.+.+ +++|.++|++||+++|+|++++ ++...
T Consensus 200 ~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~ 279 (451)
T 3oks_A 200 FGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAM 279 (451)
T ss_dssp GCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred cccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccc
Confidence 0 1134555566653212235678888777777788877 9999999999999999999987 32221
Q ss_pred ccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChh
Q 043646 279 INLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQ 358 (625)
Q Consensus 279 id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~ 358 (625)
......+. .+|++++| |.+++...+|++++++++ .+.+.+...++ + ..+.+.
T Consensus 280 ~~~~~~~~-~pdi~t~s--K~l~~G~~iG~v~~~~~~--~~~~~~~~~~~-t----------------------~~~~~~ 331 (451)
T 3oks_A 280 FACEHEGI-DPDLIVTA--KGIAGGLPLSAVTGRAEI--MDSPHVSGLGG-T----------------------YGGNPI 331 (451)
T ss_dssp SGGGGGTC-CCSEEEEC--GGGGTTSSCEEEEEEHHH--HTCSCTTSBCC-S----------------------SSSCHH
T ss_pred hhhhhcCC-CCCeeeeh--hhhhCCcceEEEEECHHH--HhhhcCCCcCC-C----------------------CCCCHH
Confidence 11111111 46877665 999764558999999887 33443322111 0 012222
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhh----CCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccC
Q 043646 359 IVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRI----LPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIER 434 (625)
Q Consensus 359 ~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L----~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~ 434 (625)
......++++.+ +.. .+.++.+++.+++++.| ...+.+..+.+ .+.++.+........ .
T Consensus 332 ~~aaa~aal~~~--~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~G~~~~~~~~~~~~~--------~ 394 (451)
T 3oks_A 332 ACAAALATIETI--ESE---GLVARAQQIEKIMKDRLGRLQAEDDRIGDVRG----RGAMIAMELVKAGTT--------E 394 (451)
T ss_dssp HHHHHHHHHHHH--HHT---THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE----ETTEEEEEEBSTTSC--------C
T ss_pred HHHHHHHHHHHH--hhh---hHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE----eeEEEEEEEecCccC--------C
Confidence 222223444443 111 33344444444444444 44565544332 345555555321000 0
Q ss_pred CCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHH
Q 043646 435 NKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILA 514 (625)
Q Consensus 435 ~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~ 514 (625)
........+.+.|.+ +||.++++..+ .+++||++++.+|++|++++++
T Consensus 395 ~~~~~~~~~~~~l~~-~Gv~v~~~~~~-------------------------------~~~iRi~~~~~~t~e~i~~~l~ 442 (451)
T 3oks_A 395 PDADLTKALCAGAHA-AGVIVLSCGTY-------------------------------GNVVRFLPPLSIGDDLLNEGLD 442 (451)
T ss_dssp BCHHHHHHHHHHHHH-TTEECEEECTT-------------------------------SCEEEECCCTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-CCcEEecCCCC-------------------------------CCEEEEECCCCCCHHHHHHHHH
Confidence 001123467777765 69999865321 3789999999999999999999
Q ss_pred HHHHHHHh
Q 043646 515 ALEFIAAY 522 (625)
Q Consensus 515 aL~~~~~~ 522 (625)
+|++++.+
T Consensus 443 ~l~~~l~~ 450 (451)
T 3oks_A 443 VLEEVLRG 450 (451)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 99988754
No 207
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.82 E-value=1e-17 Score=181.99 Aligned_cols=359 Identities=11% Similarity=0.024 Sum_probs=198.6
Q ss_pred CccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+.+..| .-|+|..+ .|..++.|.+++.+.+......... ....+...+++++++++++.+.+
T Consensus 35 G~~v~d~~g---~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~------~~~~~~~~~la~~l~~~~~~~~~ 105 (448)
T 3dod_A 35 GIKVKDING---KEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLL------GMTNVPATQLAETLIDISPKKLT 105 (448)
T ss_dssp BTEEEETTS---CEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCS------SSEEHHHHHHHHHHHHHSCTTEE
T ss_pred eCEEEECCC---CEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcccc------ccCCHHHHHHHHHHHHhCCCCCC
Confidence 344444444 34888765 3456889999999988643111111 11234567788999999976555
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCC----CceEEEEcCCCCchhH-HHHHHcC------------
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDE----ERWVVFLGPYEHHSNL-LSWRQSL------------ 202 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~g----d~~~Vlv~~~~h~s~~-~~~~~~G------------ 202 (625)
.|+||++|+.+ +..++.++... ...+| ++ |++....|+... ......|
T Consensus 106 -~v~~~~sGseA-~~~al~~~~~~-----------~~~~G~~~~~~--vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 170 (448)
T 3dod_A 106 -RVFYSDSGAEA-MEIALKMAFQY-----------WKNIGKPEKQK--FIAMKNGYHGDTIGAVSVGSIELFHHVYGPLM 170 (448)
T ss_dssp -EEEEESSHHHH-HHHHHHHHHHH-----------HHHTTCTTCCE--EEEEC---------------------------
T ss_pred -EEEEeCchHHH-HHHHHHHHHHH-----------HHhhCCCCCCE--EEEECCCCCCccHHHHHhcCCccccccccCCC
Confidence 89999555555 44444433100 00133 43 655555554433 2222222
Q ss_pred CeEEEEecCCCCCC-----------CHHHHHHHHHHhhhCCCCeEEEEeccc-CccccccC----HHHHHHHHHHcCCEE
Q 043646 203 AEVVEIGLDDNGLL-----------DIEALRSQLELYKAAKRPMLGSFSACS-NVTGIYSD----TRSIARLLHQYGGFA 266 (625)
Q Consensus 203 ~~vv~v~~~~~~~l-----------d~~~L~~~l~~~~~~~~~~lv~~~~~~-n~TG~~~~----l~~I~~la~~~g~~v 266 (625)
..+..++.+..... |+++|+++++.. .+++++|+++.++ |++|.+.+ +++|.++|++||+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~l 248 (448)
T 3dod_A 171 FESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEH--HEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLM 248 (448)
T ss_dssp --CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHH--GGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEE
T ss_pred CCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhC--CCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEE
Confidence 12344554332222 488999998731 2467888888888 99998877 999999999999999
Q ss_pred EEeccCc-CCCcc--ccCCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeecccccccc
Q 043646 267 CFDFAAS-GPYVK--INLRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDT 342 (625)
Q Consensus 267 ivD~A~~-~g~~~--id~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~ 342 (625)
|+|++++ ++... ......+. .+|++++| |.+++. ..+|++++++++. +.+.+........
T Consensus 249 I~DEv~~g~g~~g~~~a~~~~~~-~~di~t~s--K~l~~G~~~ig~v~~~~~~~--~~~~~~~~~~~~~----------- 312 (448)
T 3dod_A 249 IVDEVATGFGRTGKMFACEHENV-QPDLMAAG--KGITGGYLPIAVTFATEDIY--KAFYDDYENLKTF----------- 312 (448)
T ss_dssp EEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGGTTSSCCEEEEEEHHHH--HTTCSCGGGCCCC-----------
T ss_pred EEeccccCCCcccchhhhhhcCC-CCCEEEec--ccccCCcCceEEEEECHHHH--HHhhhccccCCcc-----------
Confidence 9999977 33221 11111111 46877765 999765 2679999999883 3332210000000
Q ss_pred ccccchhhhhc-CCChhHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEec
Q 043646 343 LYLEDIEEREN-GGTPQIVQMIRAALAFWVKEYIG-YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVY 420 (625)
Q Consensus 343 ~~~~~~~~~~~-~gt~~~~~~~~aal~~~~~~~~g-~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~ 420 (625)
..... .+++.......++++.+ +... .+.+.+....+.+.+.+ +..++.+....+ .+.++.+...
T Consensus 313 ------~~~~t~~~~~~~~aaa~aal~~~--~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~----~g~~~~~~~~ 379 (448)
T 3dod_A 313 ------FHGHSYTGNQLGCAVALENLALF--ESENIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQ----LGFMCGAELV 379 (448)
T ss_dssp ------CCCCTTTTCHHHHHHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEEE----ETTEEEEEEC
T ss_pred ------cccCCCCcCHHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEe----eeEEEEEEEc
Confidence 00000 12222222233444443 2222 33444444444555555 555665543322 2345555443
Q ss_pred cCCCCCCccccccCCCCCC-----hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcE
Q 043646 421 STTNSSPENMKIERNKPLH-----GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGW 495 (625)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~-----~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~ 495 (625)
.+... ..... ...+++.|.+ .||.++++ .++
T Consensus 380 ~~~~~---------~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~----------------------------------~~~ 415 (448)
T 3dod_A 380 RSKET---------KEPYPADRRIGYKVSLKMRE-LGMLTRPL----------------------------------GDV 415 (448)
T ss_dssp SBTTT---------TBCCCGGGCHHHHHHHHHHH-TTEECCEE----------------------------------TTE
T ss_pred cCccc---------ccccchhhHHHHHHHHHHHH-CCcEEecc----------------------------------CCE
Confidence 32100 00010 2467788866 69998753 167
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 496 TRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 496 iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
+||++++.+|++|+++++++|++++.+.
T Consensus 416 iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 443 (448)
T 3dod_A 416 IAFLPPLASTAEELSEMVAIMKQAIHEV 443 (448)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988764
No 208
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.82 E-value=1.6e-18 Score=195.70 Aligned_cols=312 Identities=14% Similarity=0.077 Sum_probs=208.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ 200 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (625)
....++++.+|+++|++. .++++ +|+++++..++.++ +++||. |+++...|.|+..+++.
T Consensus 195 g~i~eaE~~lA~~fGa~~--a~~v~-nGts~An~~ai~al---------------~~pGD~--VLv~r~~H~S~~~~l~l 254 (715)
T 3n75_A 195 GPHKEAEQYIARVFNADR--SYMVT-NGTSTANKIVGMYS---------------APAGST--ILIDRNCHKSLTHLMMM 254 (715)
T ss_dssp THHHHHHHHHHHHHTCSE--EEEES-SHHHHHHHHHHHHH---------------CCTTCE--EEEESSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC--ceEEC-cHHHHHHHHHHHHh---------------CCCCCE--EEECCCccHHHHHHHHH
Confidence 357889999999999963 34554 89888787777776 589996 99999999999999999
Q ss_pred cCCeEEEEecCCC-C----CC-----CHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEec
Q 043646 201 SLAEVVEIGLDDN-G----LL-----DIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 201 ~G~~vv~v~~~~~-~----~l-----d~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~ 270 (625)
.|+++++++.+.+ . .+ |+++|+++++++....++++++++++ |++|.+.|+++|+++|++++ +++|+
T Consensus 255 sGa~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDE 331 (715)
T 3n75_A 255 SDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDS 331 (715)
T ss_dssp SCCEEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEEC
T ss_pred cCCEEEEEeccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEcc
Confidence 9999999987542 1 24 89999999985311112458999999 99999999999999998763 79999
Q ss_pred cCcCCCc--cc--cCCCCCC-CCCcEE---EEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeecccccccc
Q 043646 271 AASGPYV--KI--NLRSRNI-DGYDAI---FLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDT 342 (625)
Q Consensus 271 A~~~g~~--~i--d~~~~~~-~~~D~v---~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~ 342 (625)
||+.+.. +. +...+.. .++|++ +.|+||+++++.+.|++++++.... ..
T Consensus 332 AH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~-~~---------------------- 388 (715)
T 3n75_A 332 AWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNE-ET---------------------- 388 (715)
T ss_dssp TTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCH-HH----------------------
T ss_pred ccccccccCCccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhH-HH----------------------
Confidence 9987642 21 1122211 126766 8999999999877799999876310 00
Q ss_pred ccccchhhhhcCCChhHHHHH--HHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHhhCCCCc------EEEeCCCCCCCcc
Q 043646 343 LYLEDIEERENGGTPQIVQMI--RAALAFWVKEY-IGYEVIKKQEDVYIESALGRILPNQN------IQVLGNTSVKRQA 413 (625)
Q Consensus 343 ~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~-~g~~~i~~~~~~l~~~l~~~L~~l~g------v~v~~~~~~~~~~ 413 (625)
.......+..++|+...++ .++++++ +. .| +.+.++...+++++++.|.++++ ++++.+.......
T Consensus 389 --~~~~~~~~~STSpsy~~~AsldaA~~~~--~~~~g-~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~ 463 (715)
T 3n75_A 389 --FNEAYMMHTTTSPHYGIVASTETAAAMM--KGNAG-KRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTE 463 (715)
T ss_dssp --HHHHHHHTSCSSCCHHHHHHHHHHHHHH--SHHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCS
T ss_pred --HHHHHHhhcCCCchHHHHHHHHHHHHHH--Hhhcc-HHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchh
Confidence 0000122334556665543 3444443 21 23 34667888889999999987754 5776653211111
Q ss_pred eE--------------------------EEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhH
Q 043646 414 IL--------------------------SFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGH 467 (625)
Q Consensus 414 i~--------------------------~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~ 467 (625)
.+ ++.+ ++.+ ..+.-...++.+..+.+.|. ++||++--.
T Consensus 464 ~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~-~~~~----~~G~~~~~Gi~g~~~~~~L~-~~~I~~E~~--------- 528 (715)
T 3n75_A 464 CWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLT-PGME----KDGTMSDFGIPASIVAKYLD-EHGIVVEKT--------- 528 (715)
T ss_dssp CEECCTTCCTTCCTTCCSSSEEECTTEEEEEC-SCBC----TTSCBCSSCCCHHHHHHHHH-HTTCCCSEE---------
T ss_pred hhccCcccccccccccccCcccCCCeEEEEEc-CCCC----CCCccccCCCcHHHHHHHHH-HCCCEEEec---------
Confidence 11 1111 0000 00000113677888999884 579987521
Q ss_pred hhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 468 TLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 468 ~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
....+=+-++...|++++++++++|.++.+.
T Consensus 529 ------------------------d~~~vl~l~s~g~~~~~~~~L~~aL~~~~~~ 559 (715)
T 3n75_A 529 ------------------------GPYNLLFLFSIGIDKTKALSLLRALTDFKRA 559 (715)
T ss_dssp ------------------------ETTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------CCCcEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 1255666667778999999999999988654
No 209
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.82 E-value=6.9e-18 Score=183.64 Aligned_cols=347 Identities=15% Similarity=0.080 Sum_probs=192.8
Q ss_pred eEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
.-|+|..++ |..++.|.+++.+++.... +.. ......+...+++++++++++.+..++|+||++|+.+
T Consensus 64 ~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~---~~~---~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA 137 (453)
T 4ffc_A 64 NSFIDLGAGIAVTTVGASHPAVAAAIADQATHFT---HTC---FMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEA 137 (453)
T ss_dssp CEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCS---CCT---TTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHH
T ss_pred CEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhcc---ccc---cCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHH
Confidence 358887654 3458899999988875431 110 1112245567889999999986533489999555555
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC-------------CeEEEEecCCC----C
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL-------------AEVVEIGLDDN----G 214 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G-------------~~vv~v~~~~~----~ 214 (625)
+..++.+.. ..+|+..+|+.....|.....+....+ ..+..++.... .
T Consensus 138 -~~~alk~a~--------------~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (453)
T 4ffc_A 138 -VENAIKVAR--------------LATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEP 202 (453)
T ss_dssp -HHHHHHHHH--------------HHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCT
T ss_pred -HHHHHHHHH--------------HhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCcc
Confidence 444443321 012332244445555554443333322 14666766421 1
Q ss_pred CCC--------HHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCccc--
Q 043646 215 LLD--------IEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVKI-- 279 (625)
Q Consensus 215 ~ld--------~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~i-- 279 (625)
.++ ++.|++++.. +.+.+|+++.+++..|.+.+ +++|.++|++||+++|+|++++ ++....
T Consensus 203 g~~~~~~~~~~~~~l~~~i~~----~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~ 278 (453)
T 4ffc_A 203 GLTGEEAARRAISRIETQIGA----QSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWF 278 (453)
T ss_dssp TCCHHHHHHHHHHHHHHHTCG----GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred ccchHHHHHHHHHHHHHhcCC----CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccc
Confidence 122 2333333321 34567777666666677766 9999999999999999999976 322211
Q ss_pred cCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhH
Q 043646 280 NLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQI 359 (625)
Q Consensus 280 d~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 359 (625)
.....+. .+|++++| |.+++...+|++++++++ .+.+.+...++ + ..+.+..
T Consensus 279 a~~~~~~-~pdi~t~s--K~~~~G~~~G~~~~~~~i--~~~~~~~~~~~-t----------------------~~~~~~~ 330 (453)
T 4ffc_A 279 ASEHEGI-VPDIVTMA--KGIAGGMPLSAVTGRAEL--MDAVYAGGLGG-T----------------------YGGNPVT 330 (453)
T ss_dssp THHHHTC-CCSEEEEC--GGGGTTSSCEEEEEEHHH--HTTSCTTSSCC-S----------------------SSSCHHH
T ss_pred hhhhcCC-CcchHhhh--hhhcCCcCeEEEEECHHH--HhhhcccCcCC-C----------------------CCcCHHH
Confidence 0111111 46777765 999764468999999887 33443322111 1 0122222
Q ss_pred HHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCC
Q 043646 360 VQMIRAALAFWVKEYIG-YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPL 438 (625)
Q Consensus 360 ~~~~~aal~~~~~~~~g-~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l 438 (625)
.....++++.. +... .+.+.+....+.+.+.+.+..++.+..+.+ .+.++.+.+...... .....
T Consensus 331 ~aaa~aal~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~--------~~~~~ 396 (453)
T 4ffc_A 331 CAAAVAALGVM--RELDLPARARAIEASVTSRLSALAEEVDIIGEVRG----RGAMLAIEIVKPGTL--------EPDAA 396 (453)
T ss_dssp HHHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEE----ETTEEEEEEBCTTSC--------CBCHH
T ss_pred HHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe----eceEEEEEEecCccc--------CCCHH
Confidence 22223444443 1212 223333333334444444444565554332 235555554321100 00001
Q ss_pred ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 439 HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 439 ~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
....+.+.|.+ +||.++++..+ ++++||++++.++++|+++++++|++
T Consensus 397 ~~~~~~~~l~~-~Gv~v~~~~~~-------------------------------~~~iRi~~~~~~t~e~i~~~l~~l~~ 444 (453)
T 4ffc_A 397 LTKSIAAEALS-QGVLILTCGTF-------------------------------GNVIRLLPPLVIGDDLLDEGITALSD 444 (453)
T ss_dssp HHHHHHHHHHH-TTEECCEECTT-------------------------------SCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCEEecCCCC-------------------------------CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 23467777765 69999865321 37899999999999999999999999
Q ss_pred HHHhh
Q 043646 519 IAAYG 523 (625)
Q Consensus 519 ~~~~~ 523 (625)
++.+.
T Consensus 445 ~l~~~ 449 (453)
T 4ffc_A 445 IIRAK 449 (453)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88763
No 210
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.81 E-value=5.1e-18 Score=184.97 Aligned_cols=362 Identities=13% Similarity=0.050 Sum_probs=207.7
Q ss_pred CccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCCC-CCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPFY-GNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQ 138 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~~-~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~ 138 (625)
+..+.+..| .-|+|..++ |..++.|.+++.+.+.... ..+. .....+...+++++++++++.+.
T Consensus 41 G~~~~d~~g---~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~------~~~~~~~~~~la~~l~~~~~~~~ 111 (459)
T 4a6r_A 41 GVYLWDSEG---NKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTF------FKTTHPAVVELSSLLAEVTPAGF 111 (459)
T ss_dssp BTEEEETTC---CEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTT------SSSCCHHHHHHHHHHHHHSCTTC
T ss_pred cCEEEECCC---CEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccc------cccCCHHHHHHHHHHHHhCCCCC
Confidence 344444444 348887654 4457899999988885421 1111 11124556788999999998766
Q ss_pred CCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC------------CeEE
Q 043646 139 ADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL------------AEVV 206 (625)
Q Consensus 139 ~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G------------~~vv 206 (625)
+ .|+|+++| ++++..++.++... ... .-++++..+|+..+..|.....+....| ..+.
T Consensus 112 ~-~v~~~~gg-seA~~~al~~~~~~-------~~~-~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (459)
T 4a6r_A 112 D-RVFYTNSG-SESVDTMIRMVRRY-------WDV-QGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMA 181 (459)
T ss_dssp C-EEEEESSH-HHHHHHHHHHHHHH-------HHH-TTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEE
T ss_pred C-EEEEeCch-HHHHHHHHHHHHHH-------HHh-cCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCE
Confidence 6 89998544 44455554443100 000 0013333244445555554443333222 1344
Q ss_pred EEecCC-----CCCCC--------HHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEe
Q 043646 207 EIGLDD-----NGLLD--------IEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFD 269 (625)
Q Consensus 207 ~v~~~~-----~~~ld--------~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD 269 (625)
.++... +. +| +++|++++++. ..+++++|+++.+++++|.+.+ +++|.++|++||+++|+|
T Consensus 182 ~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~-~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~D 259 (459)
T 4a6r_A 182 HIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEI-GADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVAD 259 (459)
T ss_dssp EECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHH-CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred EeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHc-CCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 555322 11 35 78899888741 1135678888888888898887 999999999999999999
Q ss_pred ccCc-CCCcc--ccCCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccc
Q 043646 270 FAAS-GPYVK--INLRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYL 345 (625)
Q Consensus 270 ~A~~-~g~~~--id~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~ 345 (625)
++++ ++... ......+. .+|++++| |.+++. ..+|++++++++.+ .+...
T Consensus 260 Ev~~g~gr~G~~~~~~~~~~-~pdi~t~s--K~l~gg~~~lg~v~~~~~i~~--~~~~~--------------------- 313 (459)
T 4a6r_A 260 EVICGFGRTGEWFGHQHFGF-QPDLFTAA--KGLSSGYLPIGAVFVGKRVAE--GLIAG--------------------- 313 (459)
T ss_dssp CTTTTTTTTSSSSHHHHHTC-CCSEEEEC--GGGGTTSSCCEEEEECHHHHH--HHHHH---------------------
T ss_pred ccccCCCcccccchHhhcCC-CCCeeehh--hhhcCCCCCccceeeCHHHHH--HhhcC---------------------
Confidence 9976 33221 11111111 56888776 998765 36899999988732 11100
Q ss_pred cchhhhhc-CCChhHHHHHHHHHHHHHHhhcC-HHHHH-HHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccC
Q 043646 346 EDIEEREN-GGTPQIVQMIRAALAFWVKEYIG-YEVIK-KQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYST 422 (625)
Q Consensus 346 ~~~~~~~~-~gt~~~~~~~~aal~~~~~~~~g-~~~i~-~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~ 422 (625)
........ .+.+.......++++.. +... .+.+. +....+.+.+.+.|.+++.+..+.+ .+.++.+.+..+
T Consensus 314 ~~~~~~~t~~~~~~~~aaa~aal~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~g~~~~~~~~~~ 387 (459)
T 4a6r_A 314 GDFNHGFTYSGHPVCAAVAHANVAAL--RDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRG----VGMVQAFTLVKN 387 (459)
T ss_dssp CTTHHHHHHCSCHHHHHHHHHHHHHH--HHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEE----ETTEEEEEECSB
T ss_pred CCcccCCCCCCCHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEE----EEEEEEEEEecC
Confidence 00001111 12222222223444443 2222 33444 4444555555566666776665543 345555554332
Q ss_pred CCCCCccccccCCCCC-----ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEE
Q 043646 423 TNSSPENMKIERNKPL-----HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTR 497 (625)
Q Consensus 423 ~~~~~~~~~~~~~~~l-----~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iR 497 (625)
.. ....+ ....+++.|.+ .||.++++ .+++|
T Consensus 388 ~~---------~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~----------------------------------g~~iR 423 (459)
T 4a6r_A 388 KA---------KRELFPDFGEIGTLCRDIFFR-NNLIMRAC----------------------------------GDHIV 423 (459)
T ss_dssp TT---------TTBCCSSTTHHHHHHHHHHHH-TTEECEEE----------------------------------TTEEE
T ss_pred cc---------ccccccchHHHHHHHHHHHHH-CCeEEecC----------------------------------CCEEE
Confidence 10 00011 13467777766 69999853 16799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHhhh
Q 043646 498 ITFPYYMSNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 498 is~~~~~t~edid~ll~aL~~~~~~~~ 524 (625)
|++++..|++|+++++++|++++.+..
T Consensus 424 i~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (459)
T 4a6r_A 424 SAPPLVMTRAEVDEMLAVAERCLEEFE 450 (459)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887653
No 211
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.81 E-value=5.1e-19 Score=190.02 Aligned_cols=192 Identities=14% Similarity=0.032 Sum_probs=143.7
Q ss_pred HHHHHHHHHhhCC--CCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEE--eCChHHHHHHHHHHHhcccccc
Q 043646 91 RYIEDYIINNVLP--FYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIF--CGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 91 ~~v~ea~~~~l~~--~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vif--t~sGttaal~~l~~~l~~~~~~ 166 (625)
+.|++++.+.... .+.+ . ..|.+++. -.+++++.+++++|++. .+++ +++|+. ++..++.++
T Consensus 47 ~~Vl~a~~~~~~~~~~~~~-~-~gy~Y~~~---g~~~Le~~lA~l~g~e~--alv~p~~~sGt~-A~~~al~al------ 112 (427)
T 3hvy_A 47 LKVLKAFQEERISESHFTN-S-SGYGYNDI---GRDSLDRVYANIFNTES--AFVRPHFVNGTH-AIGAALFGN------ 112 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCC-C-CTTCTTCH---HHHHHHHHHHHHHTCSE--EEEETTCCSHHH-HHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHhccc-C-cCCCCCch---hHHHHHHHHHHHhCCCc--eEEeCCCCcHHH-HHHHHHHHh------
Confidence 5788888775432 1222 2 22333332 26778899999999864 3553 546765 566666665
Q ss_pred hhhhhhhhccCCCCceEEEEcC-CCCchhHH-----------HHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 167 IMRDKLITSLRDEERWVVFLGP-YEHHSNLL-----------SWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~-~~h~s~~~-----------~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
++|||+ |+++. ..|..... .++..|++++.++. +++.+|+++|++++++. ++|
T Consensus 113 ---------l~pGD~--Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~-~~~~~d~e~l~~~i~~~---~~t 177 (427)
T 3hvy_A 113 ---------LRPNDT--MMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL-KDGKVDINTVKEELKKD---DSI 177 (427)
T ss_dssp ---------CCTTCE--EEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC-BTTBCCHHHHHHHHHHC---TTE
T ss_pred ---------cCCCCE--EEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecC-CCCCcCHHHHHHHhhCC---CCC
Confidence 689996 88887 77776542 23457999999998 67889999999999841 379
Q ss_pred eEEEEec----ccCccccccCHHHHHHHHHH--cCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCC---CCC
Q 043646 235 MLGSFSA----CSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGG---PGT 305 (625)
Q Consensus 235 ~lv~~~~----~~n~TG~~~~l~~I~~la~~--~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lgg---p~g 305 (625)
++|++++ ++||||.+.|+++|+++|++ +|+++++|++++.+......... ++|+++.|+||++|+ |.|
T Consensus 178 klV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~~~---gaDiv~~S~sK~lgg~g~~~G 254 (427)
T 3hvy_A 178 KLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTDV---GADIIAGSLIKNIGGGIATTG 254 (427)
T ss_dssp EEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGGGG---TCSEEEEETTSGGGTTTCCSC
T ss_pred EEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccccccCCCCccc---CCeEEEECCcccccccccceE
Confidence 9999999 99999999999999999999 89999999999877632222223 789999999999987 454
Q ss_pred ceEEEEeccc
Q 043646 306 PGILLISKAL 315 (625)
Q Consensus 306 ~G~l~v~~~~ 315 (625)
|+++.++++
T Consensus 255 -G~i~~~~~l 263 (427)
T 3hvy_A 255 -GYIAGKEEY 263 (427)
T ss_dssp -EEEEECHHH
T ss_pred -EEEEECHHH
Confidence 999998877
No 212
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.81 E-value=6e-19 Score=188.78 Aligned_cols=193 Identities=13% Similarity=0.036 Sum_probs=145.5
Q ss_pred HHHHHHHHHhhC-CCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEE--eCChHHHHHHHHHHHhcccccch
Q 043646 91 RYIEDYIINNVL-PFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIF--CGAGTTAAIKRLQEVMGITVPSI 167 (625)
Q Consensus 91 ~~v~ea~~~~l~-~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vif--t~sGttaal~~l~~~l~~~~~~~ 167 (625)
..|++++.+... ....++.+ .+.++... .+++++.+++++|++. .+++ +++|+. ++..++.++
T Consensus 32 ~~vl~a~~~~~~~~~~~~~~~-~~~y~~~~---~~~Le~~lA~l~g~e~--alv~p~~~sGt~-Ai~~al~al------- 97 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFHPST-GYGYDDEG---RDTLERVYATVFKTEA--ALVRPQIISGTH-AISTVLFGI------- 97 (409)
T ss_dssp HHHHHHHHHTTCCGGGGCCCC-TTCTTCHH---HHHHHHHHHHHHTCSE--EEEETTSCSHHH-HHHHHHHHH-------
T ss_pred HHHHHHHHHhhhhhhccCCCc-CCCCChhH---HHHHHHHHHHHhCCCc--EEEECCCccHHH-HHHHHHHHh-------
Confidence 467788877652 22223332 23333332 6778899999999863 3553 556655 466666655
Q ss_pred hhhhhhhccCCCCceEEEEcC-CCCchhHHH----------HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeE
Q 043646 168 MRDKLITSLRDEERWVVFLGP-YEHHSNLLS----------WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPML 236 (625)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~-~~h~s~~~~----------~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~l 236 (625)
+++||+ |+++. ..|...... ++..|++++.+++++++.+|+++|+++++ ++|++
T Consensus 98 --------l~~GD~--Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~-----~~tkl 162 (409)
T 3jzl_A 98 --------LRPDDE--LLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMT-----PKTKM 162 (409)
T ss_dssp --------CCTTCE--EEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCC-----TTEEE
T ss_pred --------cCCCCE--EEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhcc-----CCCeE
Confidence 578985 88887 778777643 34569999999998889999999999997 58999
Q ss_pred EEEec----ccCccccccCHHHHHHHHHH--cCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceE
Q 043646 237 GSFSA----CSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGI 308 (625)
Q Consensus 237 v~~~~----~~n~TG~~~~l~~I~~la~~--~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~ 308 (625)
|++++ ++|+||.+.|+++|+++||+ +|+++++|++++.+....+.... ++|+++.|+||++|++.. .|+
T Consensus 163 V~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~~~---g~Div~~S~sK~lgg~~~~~GG~ 239 (409)
T 3jzl_A 163 IGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEV---GADIIAGSLIKNPGGGLAKTGGY 239 (409)
T ss_dssp EEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSGGG---TCSEEEEETTSGGGTTTCSSCEE
T ss_pred EEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccccCCcccc---CCeEEEECccccCCccCCceEEE
Confidence 99999 99999999999999999999 99999999998877633222233 789999999999987532 389
Q ss_pred EEEeccc
Q 043646 309 LLISKAL 315 (625)
Q Consensus 309 l~v~~~~ 315 (625)
++.++++
T Consensus 240 v~~~~~l 246 (409)
T 3jzl_A 240 IAGKEAL 246 (409)
T ss_dssp EEECHHH
T ss_pred EEeCHHH
Confidence 9988877
No 213
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.81 E-value=1.7e-18 Score=186.05 Aligned_cols=195 Identities=14% Similarity=0.025 Sum_probs=145.9
Q ss_pred HHHHHHHHHhhC-CCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEE--eCChHHHHHHHHHHHhcccccch
Q 043646 91 RYIEDYIINNVL-PFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIF--CGAGTTAAIKRLQEVMGITVPSI 167 (625)
Q Consensus 91 ~~v~ea~~~~l~-~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vif--t~sGttaal~~l~~~l~~~~~~~ 167 (625)
+.|++++.+... ....++.. .|.+++.. .+++++.+++++|++.. +++ +++|+. ++..++.++
T Consensus 46 ~~Vl~A~~~~~~~~~~~~~~~-gy~y~~~~---~~~Le~~lA~l~g~e~a--lv~p~~~sGt~-Ai~~al~al------- 111 (427)
T 3i16_A 46 LKVLNAFQEERISEAHFTNSS-GYGYGDIG---RDSLDAVYARVFNTESA--LVRPHFVNGTH-ALGAALFGN------- 111 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCC-TTCTTCHH---HHHHHHHHHHHHTCSEE--EEETTCCSHHH-HHHHHHHHH-------
T ss_pred HHHHHHHHHhchhHHhcCCCC-CCCCCHHH---HHHHHHHHHHHhCCcce--EEeCCCccHHH-HHHHHHHHH-------
Confidence 468888876542 22222222 23333332 67788999999998643 563 557765 566666665
Q ss_pred hhhhhhhccCCCCceEEEEcC-CCCchhHHH-----------HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCe
Q 043646 168 MRDKLITSLRDEERWVVFLGP-YEHHSNLLS-----------WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPM 235 (625)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~-~~h~s~~~~-----------~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~ 235 (625)
++|||+ |+++. ..|...... ++..|++++.+++++++.+|+++|++++++. ++|+
T Consensus 112 --------l~pGD~--Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~---~~tk 178 (427)
T 3i16_A 112 --------LRPGNT--MLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKED---ESIT 178 (427)
T ss_dssp --------CCTTCE--EEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTC---TTEE
T ss_pred --------hCCCCE--EEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCC---CCCE
Confidence 578985 88887 777766532 3456999999999888899999999999731 3799
Q ss_pred EEEEec----ccCccccccCHHHHHHHHHH--cCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCC---CCCc
Q 043646 236 LGSFSA----CSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGG---PGTP 306 (625)
Q Consensus 236 lv~~~~----~~n~TG~~~~l~~I~~la~~--~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lgg---p~g~ 306 (625)
+|++++ ++||||.+.|+++|+++||+ +|+++++|++++.+......... ++|+++.|+||++|+ |.|
T Consensus 179 lV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~~~---gaDiv~~S~sK~lgg~g~~~g- 254 (427)
T 3i16_A 179 LVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTDV---GADLIAGSLIKNIGGGIAPTG- 254 (427)
T ss_dssp EEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGGGG---TCSEEEEETTSGGGTTTCCSC-
T ss_pred EEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCccccccCCcccc---CCeEEEecCcccCCCCCCceE-
Confidence 999999 99999999999999999999 99999999999877633222233 789999999999987 444
Q ss_pred eEEEEecccc
Q 043646 307 GILLISKALY 316 (625)
Q Consensus 307 G~l~v~~~~~ 316 (625)
|+++.++++.
T Consensus 255 G~i~~~~~li 264 (427)
T 3i16_A 255 GYLAGTKDCI 264 (427)
T ss_dssp EEEEECHHHH
T ss_pred EEEEECHHHH
Confidence 9999998873
No 214
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.80 E-value=1.5e-17 Score=181.91 Aligned_cols=349 Identities=13% Similarity=0.034 Sum_probs=203.0
Q ss_pred eEeccCCC------CCcchHHHHHHHHHhhCCCC-CCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHH
Q 043646 78 LTYADHTA------SGRSLRYIEDYIINNVLPFY-GNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTT 150 (625)
Q Consensus 78 ~~Yld~~~------~~~~p~~v~ea~~~~l~~~~-~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtt 150 (625)
.-|+|..+ .|..++.|.+++.+++.... ..+.. ....+...+++++++++++.+.+ .|+|+++|+.
T Consensus 55 ~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~------~~~~~~~~~lae~l~~~~~~~~~-~v~~~~sGse 127 (472)
T 3hmu_A 55 EEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFF------KTTHVPAIALAQKLAELAPGDLN-HVFFAGGGSE 127 (472)
T ss_dssp CEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSS------SEECHHHHHHHHHHHHHSCTTEE-EEEEESSHHH
T ss_pred CEEEECCCchhhccCCCCCHHHHHHHHHHHHhcccccccc------ccCCHHHHHHHHHHHHhCCCCCC-EEEEeCCHHH
Confidence 35888765 34568899999998885432 11111 11234567788999999876555 8999865655
Q ss_pred HHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC-----------eEEEEecCC----CCC
Q 043646 151 AAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA-----------EVVEIGLDD----NGL 215 (625)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-----------~vv~v~~~~----~~~ 215 (625)
+ +..++.+.... .... -.++...+|+..+..|.....+....|. .++.++... +..
T Consensus 128 A-~~~aik~a~~~-------~~~~-g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~ 198 (472)
T 3hmu_A 128 A-NDTNIRMVRTY-------WQNK-GQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD 198 (472)
T ss_dssp H-HHHHHHHHHHH-------HHHT-TCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT
T ss_pred H-HHHHHHHHHHH-------HHhc-CCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc
Confidence 5 44444433100 0000 0133333455555556555444333332 355565432 101
Q ss_pred CC--------HHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc--cc
Q 043646 216 LD--------IEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK--IN 280 (625)
Q Consensus 216 ld--------~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~--id 280 (625)
.| +++|++++++. ..+++++|+++.+++++|.+.+ +++|.++|++||+++|+|++++ +|... ..
T Consensus 199 ~~~~~~~~~~~~~le~~i~~~-~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a 277 (472)
T 3hmu_A 199 MDPEEFGLARARELEEAILEL-GENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFG 277 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-CGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCH
T ss_pred cCHHHHHHHHHHHHHHHHHhc-CCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccch
Confidence 34 78888888741 1135789999999999999987 9999999999999999999987 33221 11
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCc-ccCCceEEeeccccccccccccchhhhhcCCChh
Q 043646 281 LRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPS-TCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQ 358 (625)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~-~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~ 358 (625)
....+. .+|++++| |.+++. ..+|++++++++.+ .+.+. ...+++ ..+.|.
T Consensus 278 ~~~~~v-~pdi~t~s--K~l~gg~~plG~v~~~~~i~~--~~~~~~~~~~~t----------------------~~~np~ 330 (472)
T 3hmu_A 278 TQTMGI-RPHIMTIA--KGLSSGYAPIGGSIVCDEVAH--VIGKDEFNHGYT----------------------YSGHPV 330 (472)
T ss_dssp HHHHTC-CCSEEEEC--GGGTTTSSCCEEEEEEHHHHH--HHTTSCBCCCCT----------------------TTTCHH
T ss_pred hHHhCC-CCceeeec--hhhhcCCcceEEEEECHHHHH--hcccCCccccCC----------------------CCCCHH
Confidence 111111 57888776 999865 35799999988742 22110 000000 012222
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHH-HHHHHHHHhhC---CCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccC
Q 043646 359 IVQMIRAALAFWVKEYIGYEVIKKQED-VYIESALGRIL---PNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIER 434 (625)
Q Consensus 359 ~~~~~~aal~~~~~~~~g~~~i~~~~~-~l~~~l~~~L~---~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~ 434 (625)
......++++.+ +. +.+.++.+ ++.+++++.|+ +.|.+..+.+ .+.++.+.+..+.. .
T Consensus 331 a~aAa~aaL~~~--~~---~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~----~G~~~~i~~~~~~~---------~ 392 (472)
T 3hmu_A 331 AAAVALENLRIL--EE---ENILDHVRNVAAPYLKEKWEALTDHPLVGEAKI----VGMMASIALTPNKA---------S 392 (472)
T ss_dssp HHHHHHHHHHHH--HH---TTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEEE----ETTEEEEEECSCGG---------G
T ss_pred HHHHHHHHHHHH--HH---hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe----cCceEEEEEecCcc---------c
Confidence 222223444443 22 23344444 55555555554 3455554433 34555555532210 0
Q ss_pred CCCC------ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHH
Q 043646 435 NKPL------HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEE 508 (625)
Q Consensus 435 ~~~l------~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~ed 508 (625)
...+ ....+++.|.+ .||.++++ .+++||++++.+|++|
T Consensus 393 ~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~----------------------------------g~~iRi~p~~~~t~e~ 437 (472)
T 3hmu_A 393 RAKFASEPGTIGYICRERCFA-NNLIMRHV----------------------------------GDRMIISPPLVITPAE 437 (472)
T ss_dssp TCCBSSCTTHHHHHHHHHHHH-TTBCCEEE----------------------------------TTEEEECCCTTCCHHH
T ss_pred cccccchhHHHHHHHHHHHHH-CCcEEEec----------------------------------CCEEEEECCCCCCHHH
Confidence 0011 03467777765 69998853 1679999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 043646 509 FEFILAALEFIAAYG 523 (625)
Q Consensus 509 id~ll~aL~~~~~~~ 523 (625)
+++++++|++++.+.
T Consensus 438 i~~~l~~l~~~l~~~ 452 (472)
T 3hmu_A 438 IDEMFVRIRKSLDEA 452 (472)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988664
No 215
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.80 E-value=1.2e-18 Score=186.69 Aligned_cols=294 Identities=10% Similarity=0.061 Sum_probs=182.2
Q ss_pred HHHHHHHHHHh-CCC-----CCCcEE--EeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH
Q 043646 124 HEASNYIKRCL-GGG-----QADAII--FCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL 195 (625)
Q Consensus 124 ~~~~~~ia~~~-g~~-----~~~~vi--ft~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~ 195 (625)
.++++.+++++ |.. ++ +|. .| .|+++++..+..++.. ..++||+ |+++.+.|.++.
T Consensus 82 ~~lr~~ia~~~~~~~~~~~~~~-~i~~~~~-~~g~ga~~~~~~~~~~------------~~~~gd~--Vlv~~p~y~~~~ 145 (409)
T 4eu1_A 82 ASFVEEAQKLCFGPTCAALRDG-RIASCQT-LGGTGALRIGGDLLNR------------FVANCNR--IYGPDVGYPNHE 145 (409)
T ss_dssp HHHHHHHHHHHHCSSCHHHHTT-CEEEEEE-SHHHHHHHHHHHHGGG------------TSSSCCE--EEEESSCCTHHH
T ss_pred HHHHHHHHHHHcCCCchhhccC-ceeeeec-ccchHHHHHHHHHHHH------------hcCCCCE--EEEeCCCcHhHH
Confidence 45677777765 654 33 664 36 5677777765444311 1467785 999999999998
Q ss_pred HHHHHcCCeEEEEecC--CCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCH---HHHHHHHHHcCCEEEEec
Q 043646 196 LSWRQSLAEVVEIGLD--DNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDF 270 (625)
Q Consensus 196 ~~~~~~G~~vv~v~~~--~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l---~~I~~la~~~g~~vivD~ 270 (625)
..++..|++++.++++ .++.+|+++|++++++. .++++++++++++||||.+.+. ++|+++|++||+++++|+
T Consensus 146 ~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~--~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De 223 (409)
T 4eu1_A 146 SIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKA--PEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDM 223 (409)
T ss_dssp HHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHS--CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhC--CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEec
Confidence 8899999999999983 45689999999999741 1356788889999999999885 459999999999999999
Q ss_pred cCcCCC-cc-----ccCCCC-CCCCCcEEEEcCCCCCCCCC-CceEE--EEec-cccc--cCCCCCcccCCceEEeeccc
Q 043646 271 AASGPY-VK-----INLRSR-NIDGYDAIFLATHKFLGGPG-TPGIL--LISK-ALYQ--LGSSPPSTCGGGTVNYVNAF 337 (625)
Q Consensus 271 A~~~g~-~~-----id~~~~-~~~~~D~v~~S~hK~lggp~-g~G~l--~v~~-~~~~--l~~~~p~~~ggg~v~~~~~~ 337 (625)
+++... .+ ..+... ....-.+++.|++|.+|.|+ .+|++ ++.+ +... ...+
T Consensus 224 ~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~---------------- 287 (409)
T 4eu1_A 224 AYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQL---------------- 287 (409)
T ss_dssp SCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHH----------------
T ss_pred cccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHH----------------
Confidence 966432 11 111110 11123467789999998554 47887 5543 3100 0000
Q ss_pred cccccccccchhhhhcCCChhHHHHH-HHHHHHHH--Hh-hcCHHHHHHHHHHHHHHHHHhhCCCC--c-EEEeCCCCCC
Q 043646 338 DEKDTLYLEDIEERENGGTPQIVQMI-RAALAFWV--KE-YIGYEVIKKQEDVYIESALGRILPNQ--N-IQVLGNTSVK 410 (625)
Q Consensus 338 ~~~~~~~~~~~~~~~~~gt~~~~~~~-~aal~~~~--~~-~~g~~~i~~~~~~l~~~l~~~L~~l~--g-v~v~~~~~~~ 410 (625)
.........+.+.+.+.+ .+++.-.. .+ ....+.++++.+++++++.+.|.+++ + +++..+
T Consensus 288 --------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~---- 355 (409)
T 4eu1_A 288 --------ALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIER---- 355 (409)
T ss_dssp --------HHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHH----
T ss_pred --------HHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecC----
Confidence 000011112222333321 12222100 00 11245667778888889999887752 1 444433
Q ss_pred CcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCC
Q 043646 411 RQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLG 490 (625)
Q Consensus 411 ~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g 490 (625)
..+++.|.- +.. +++..|.+++||.+.+|
T Consensus 356 ~~~~~~~~~------------------~~~-~~~~~ll~~~gv~v~p~-------------------------------- 384 (409)
T 4eu1_A 356 QVGMMAYTG------------------LTR-EQVELLRSEYHIYMTLN-------------------------------- 384 (409)
T ss_dssp SCSSEEECC------------------CCH-HHHHHHHHHHCEECCTT--------------------------------
T ss_pred CceEEEEeC------------------CCH-HHHHHHHHcCCEEEcCC--------------------------------
Confidence 235555421 123 44556666789998732
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 491 VKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 491 ~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.||+++.. +++|+++++++|++++
T Consensus 385 -----~Ri~~~~~-~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 385 -----GRAAVSGL-NSTNVEYVSQAIHNVT 408 (409)
T ss_dssp -----CEEEGGGC-CTTTHHHHHHHHHHHH
T ss_pred -----CEEEEEec-CHhhHHHHHHHHHHHh
Confidence 38888654 5677999999998875
No 216
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.80 E-value=1.2e-17 Score=182.96 Aligned_cols=357 Identities=13% Similarity=0.014 Sum_probs=206.1
Q ss_pred EeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 79 TYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 79 ~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
-|+|..++ |..++.|.+++.+.+......... ....+...++.++++++++.+.+ .|+|+++|+.+.
T Consensus 55 ~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~------~~~~~~~~~la~~l~~~~~~~~~-~v~~~~sGseA~ 127 (476)
T 3i5t_A 55 RLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPW------YMATSPAARLAEKIATLTPGDLN-RIFFTTGGSTAV 127 (476)
T ss_dssp EEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTT------TCBCHHHHHHHHHHHTTSSTTCC-EEEEESSHHHHH
T ss_pred EEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccC------ccCCHHHHHHHHHHHhcCCCCcC-EEEEeCchHHHH
Confidence 48886543 456889999999888542111110 11245667889999999976655 899996666664
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC------------eEEEEecCC--CC-CCC
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA------------EVVEIGLDD--NG-LLD 217 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~------------~vv~v~~~~--~~-~ld 217 (625)
...+..++.. ....-+++...+|+..+..|.....+....|. .+..++... .. ..|
T Consensus 128 ~~Aik~a~~~---------~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 198 (476)
T 3i5t_A 128 DSALRFSEFY---------NNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRS 198 (476)
T ss_dssp HHHHHHHHHH---------HHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSC
T ss_pred HHHHHHHHHH---------HHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCc
Confidence 3333222210 00000133333455555666555444433221 234444321 11 112
Q ss_pred --------HHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc--ccCC
Q 043646 218 --------IEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK--INLR 282 (625)
Q Consensus 218 --------~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~--id~~ 282 (625)
+++|++++++. ..+++++|+++.+++++|.+.+ +++|.++|++||+++|+|++++ +|... ....
T Consensus 199 ~~~~~~~~~~~le~~i~~~-~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~ 277 (476)
T 3i5t_A 199 QEAFLDDLVQEFEDRIESL-GPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASE 277 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHH
T ss_pred hHHHHHHHHHHHHHHHHhc-CCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeee
Confidence 78899988741 1135789999999999998766 9999999999999999999987 33221 1111
Q ss_pred -CCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhc-CCChhH
Q 043646 283 -SRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN-GGTPQI 359 (625)
Q Consensus 283 -~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~-~gt~~~ 359 (625)
..+. .+|++++| |.+++. ..+|++++++++. +.+.+.......+ ..... .+.|..
T Consensus 278 ~~~~v-~pdi~t~s--K~l~~G~~plg~v~~~~~i~--~~~~~~~~~~~~~-----------------~~~~t~~~np~a 335 (476)
T 3i5t_A 278 KVFGV-VPDIITFA--KGVTSGYVPLGGLAISEAVL--ARISGENAKGSWF-----------------TNGYTYSNQPVA 335 (476)
T ss_dssp HTTCC-CCSEEEEC--GGGGTTSSCCEEEEECHHHH--HTTSGGGCTTCEE-----------------CCCCTTTTCHHH
T ss_pred cccCC-Ccchhhhh--hhhcCCCcCeEEEEECHHHH--HHHhcCCcccccc-----------------cccCCCCcCHHH
Confidence 1111 56888776 999865 4579999998873 3332211000000 00000 122222
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC---CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCC
Q 043646 360 VQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP---NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNK 436 (625)
Q Consensus 360 ~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~---l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~ 436 (625)
.....++++.+ +. +.+.++.+++.+++++.|.. .|.+..+.+ .+.++.+.+..+.. ...
T Consensus 336 ~aAa~aaL~~~--~~---~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~----~G~~~~i~~~~~~~---------~~~ 397 (476)
T 3i5t_A 336 CAAALANIELM--ER---EGIVDQAREMADYFAAALASLRDLPGVAETRS----VGLVGCVQCLLDPT---------RAD 397 (476)
T ss_dssp HHHHHHHHHHH--HH---TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEE----ETTEEEEEECCC--------------
T ss_pred HHHHHHHHHHH--Hh---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe----cCceeEEEEecCcc---------ccc
Confidence 22233445443 22 24555666666666666654 455544432 33455554432210 000
Q ss_pred CC-----ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHH
Q 043646 437 PL-----HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEF 511 (625)
Q Consensus 437 ~l-----~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ 511 (625)
.. ....+++.|.+ .||.+++. .+++||++++.+|++|+++
T Consensus 398 ~~~~~~~~~~~~~~~l~~-~Gv~v~~~----------------------------------g~~iRi~p~l~~t~e~i~~ 442 (476)
T 3i5t_A 398 GTAEDKAFTLKIDERCFE-LGLIVRPL----------------------------------GDLCVISPPLIISRAQIDE 442 (476)
T ss_dssp CCHHHHHHHHHHHHHHHH-TTEECEEE----------------------------------TTEEEECCCTTCCHHHHHH
T ss_pred cccchhHHHHHHHHHHHH-CCCEEEec----------------------------------CCEEEEECCCCCCHHHHHH
Confidence 11 13467777765 69998741 1689999999999999999
Q ss_pred HHHHHHHHHHhhhhcc
Q 043646 512 ILAALEFIAAYGHRFL 527 (625)
Q Consensus 512 ll~aL~~~~~~~~~~~ 527 (625)
++++|++++.+..+.+
T Consensus 443 ~l~~l~~~l~~~~~~~ 458 (476)
T 3i5t_A 443 MVAIMRQAITEVSAAH 458 (476)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999987765544
No 217
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.79 E-value=2.6e-18 Score=191.00 Aligned_cols=363 Identities=13% Similarity=0.063 Sum_probs=204.7
Q ss_pred CcchHHHHHHHHHhhC-CCCCCCCCCcchhhHHHHHHHHH-HHHHHHHHhCC--C--CCCcEEEeCChHHHHHHHHHHHh
Q 043646 87 GRSLRYIEDYIINNVL-PFYGNTHTSDSYVGQRMTKMVHE-ASNYIKRCLGG--G--QADAIIFCGAGTTAAIKRLQEVM 160 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~-~~~~n~~~~~~~~~~~~~~~~~~-~~~~ia~~~g~--~--~~~~vift~sGttaal~~l~~~l 160 (625)
+..++.+.+++.+.+. ..|..+. +...+.++ ++.++.+..+. . +.++|++| +|+++++..++.++
T Consensus 115 ~~~~~~~~~al~~~~~~~~Y~~~~--------g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t-~G~~eal~~~~~~l 185 (546)
T 2zy4_A 115 GLDPAAFLHEMVDGILGCNYPVPP--------RMLNISEKIVRQYIIREMGADAIPSESVNLFAV-EGGTAAMAYIFESL 185 (546)
T ss_dssp CCCHHHHHHHHHHHHHTCSCCSSS--------SCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEE-EHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHhhhcCCCCCCc--------CCHHHHHHHHHHHHHHhccCCCCCCCcceEEEE-CCHHHHHHHHHHHh
Confidence 3455667777766653 1222221 11233433 33344444433 1 23488998 89999999988774
Q ss_pred cccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH--cCCeEEEEecCCC--CCCCHHHHHHHHHHhhhCCCCeE
Q 043646 161 GITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ--SLAEVVEIGLDDN--GLLDIEALRSQLELYKAAKRPML 236 (625)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~--~G~~vv~v~~~~~--~~ld~~~L~~~l~~~~~~~~~~l 236 (625)
... ..+++||. |+++.+.|+.+...... .|++++.++.+++ ..+|+++|+++++ +++++
T Consensus 186 ~~~----------~l~~~Gd~--Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~-----~~~k~ 248 (546)
T 2zy4_A 186 KLN----------GLLKAGDK--VAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKD-----PAIKI 248 (546)
T ss_dssp HHT----------TSSCTTCE--EEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS-----TTEEE
T ss_pred hhh----------hcCCCCCE--EEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC-----CCCeE
Confidence 100 01468885 88999999988766543 4789999998753 4689999988765 57999
Q ss_pred EEEecccCccccccC---HHHHHHHH--HHcCCEEEEeccCcCCCc-cccCCCCCCCCCcEEEEcCCCCCCCCC-CceEE
Q 043646 237 GSFSACSNVTGIYSD---TRSIARLL--HQYGGFACFDFAASGPYV-KINLRSRNIDGYDAIFLATHKFLGGPG-TPGIL 309 (625)
Q Consensus 237 v~~~~~~n~TG~~~~---l~~I~~la--~~~g~~vivD~A~~~g~~-~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l 309 (625)
|++++++||||.+.+ +++|+++| +++|+++|+|++++.... +..+.... .+.++++.|++|++|.|+ .+|++
T Consensus 249 v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~-~~~~i~~~S~SK~~g~~GlRiG~~ 327 (546)
T 2zy4_A 249 FFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAIC-PENTLLVYSFSKYFGATGWRLGVV 327 (546)
T ss_dssp EEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHC-GGGEEEEEESTTTTTCGGGCEEEE
T ss_pred EEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhC-CCCEEEEEeCccccCCCCcceEEE
Confidence 999999999999987 55678888 779999999999874321 11111110 134688899999997554 38999
Q ss_pred EEecc-ccc-c-CCCCC-------cccCCceEEeeccccccccccccch-------hhhhcCCChhHHHHHHH--HHHHH
Q 043646 310 LISKA-LYQ-L-GSSPP-------STCGGGTVNYVNAFDEKDTLYLEDI-------EERENGGTPQIVQMIRA--ALAFW 370 (625)
Q Consensus 310 ~v~~~-~~~-l-~~~~p-------~~~ggg~v~~~~~~~~~~~~~~~~~-------~~~~~~gt~~~~~~~~a--al~~~ 370 (625)
+++++ +.. + ..+.+ ..+...+ ..++. ..+.+.. ......+.+.+.+...+ ++..+
T Consensus 328 ~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~---~~p~~---~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~al 401 (546)
T 2zy4_A 328 AAHQQNVFDLALDKLQESEKVALDHRYRSLL---PDVRS---LKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFAL 401 (546)
T ss_dssp EEESSCHHHHHHHTSCHHHHHHHHHHHTTTC---SCGGG---CCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHhhcchhhhHHHHHHhhhcc---ccccc---hhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHH
Confidence 99886 421 1 00000 0000000 00000 0000000 00111233333333211 11122
Q ss_pred HHh-hcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCC-------CCCCh-H
Q 043646 371 VKE-YIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERN-------KPLHG-P 441 (625)
Q Consensus 371 ~~~-~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~-------~~l~~-~ 441 (625)
+.+ ....+.+++..++..+.+.+.|. + ++.+.. ...+.+.+.-.+... ... ..+ .+.+. .
T Consensus 402 l~~~~~~~~~~r~~~~~r~~~l~~~L~-~-~~~~~~----~~~~~~l~~~l~~~~----~~~-~~~~~~~wl~~~~~~~~ 470 (546)
T 2zy4_A 402 MDEADEYKHTLKQLIRRRETTLYRELG-M-PPLRDE----NAVDYYTLIDLQDVT----AKL-YGEAFSEWAVKQSSTGD 470 (546)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHGGGT-S-SCCCCT----TBCCSEEEEEHHHHH----HHH-HCHHHHHHHHHHCCHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhcC-C-CcccCC----CCeeEEEEEEHHHhh----ccc-ccHHHHHHhhccCCHHH
Confidence 211 11234556666666777788775 3 232222 234555444322100 000 000 00112 2
Q ss_pred HHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 442 FVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 442 ~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
++.+.| .++||.+++|..|+. .++++||+++ ..+++++++++++|++++.
T Consensus 471 ~l~~ll-~~~gV~v~pG~~F~~----------------------------~~~~iRis~~-~~~~e~i~~~~~~l~~~l~ 520 (546)
T 2zy4_A 471 MLFRIA-DETGIVLLPGRGFGS----------------------------NRPSGRASLA-NLNEYEYAAIGRALRKMAD 520 (546)
T ss_dssp HHHHHH-HHHSCCCEESSCTTC----------------------------SSCEEEEESS-SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHCCEEEeCccccCC----------------------------CCCeEEEEec-cCCHHHHHHHHHHHHHHHH
Confidence 345555 568999999988752 1478999997 4579999999999998876
Q ss_pred hh
Q 043646 522 YG 523 (625)
Q Consensus 522 ~~ 523 (625)
+.
T Consensus 521 ~~ 522 (546)
T 2zy4_A 521 EL 522 (546)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 218
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.79 E-value=1.9e-17 Score=178.88 Aligned_cols=336 Identities=16% Similarity=0.105 Sum_probs=189.4
Q ss_pred eEeccCCCCC------cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTASG------RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~~------~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
.-|+|..++. ..++.|.+++.+.+.....+ .+ ......+++++++++++ +.+ +|+|+++|+.+
T Consensus 55 ~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~----~~-----~~~~~~~l~~~la~~~~-~~~-~v~~~~sGsea 123 (434)
T 3l44_A 55 NKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLY----GT-----PTALEVKFAKMLKEAMP-ALD-KVRFVNSGTEA 123 (434)
T ss_dssp CEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSCC----SS-----CCHHHHHHHHHHHHHCT-TCS-EEEEESSHHHH
T ss_pred CEEEECCCchhccccCCCCHHHHHHHHHHHHhCcCC----CC-----CCHHHHHHHHHHHHhCC-CCC-EEEEeCchHHH
Confidence 3588876653 35889999998887542111 01 12345668889999987 444 89999555555
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCch-hHHHHHHcCC-------------------eEEEEecC
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHS-NLLSWRQSLA-------------------EVVEIGLD 211 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s-~~~~~~~~G~-------------------~vv~v~~~ 211 (625)
+..++.+.. ...++++ |++....|+. ........|. .+..+|.+
T Consensus 124 -~~~ai~~a~-------------~~~~~~~--vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (434)
T 3l44_A 124 -VMTTIRVAR-------------AYTGRTK--IMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFN 187 (434)
T ss_dssp -HHHHHHHHH-------------HHHCCCE--EEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTT
T ss_pred -HHHHHHHHH-------------HhhCCCE--EEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcc
Confidence 444444331 0123443 5554444443 3322221222 23333322
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCC---Ccc-ccCCC
Q 043646 212 DNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGP---YVK-INLRS 283 (625)
Q Consensus 212 ~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g---~~~-id~~~ 283 (625)
|+++|++++++. .+++++|+++.+++++|.+.| +++|.++|++||+++|+|+++..- ... .+...
T Consensus 188 -----d~~~le~~l~~~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~~~~~~~~~ 260 (434)
T 3l44_A 188 -----NVETLKEALDKW--GHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGGAQDLLG 260 (434)
T ss_dssp -----CHHHHHHHHHHH--GGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSSSCHHHHHT
T ss_pred -----cHHHHHHHHHhC--CCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccccHHHHHcC
Confidence 899999999742 235788888888888999988 999999999999999999998632 100 11111
Q ss_pred CCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCc--ccCCceEEeeccccccccccccchhhhhcCCChhHHH
Q 043646 284 RNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPS--TCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQ 361 (625)
Q Consensus 284 ~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~--~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 361 (625)
. .+|++++| |.++++..+|++++++++ ++.+.+. ...+++ ..+.+....
T Consensus 261 ~---~~di~t~s--K~~~~G~~iG~~~~~~~i--~~~~~~~~~~~~~~t----------------------~~~~~~a~a 311 (434)
T 3l44_A 261 V---TPDLTALG--KVIGGGLPIGAYGGKKEI--MEQVAPLGPAYQAGT----------------------MAGNPASMA 311 (434)
T ss_dssp C---CCSEEEEE--GGGGTTSSCEEEEECHHH--HTTBTTTSSBCCCCT----------------------TTTCHHHHH
T ss_pred C---CCCeeehh--hhhcCCcCeeeEEEcHHH--HHhhccCCCcccCCC----------------------CCcCHHHHH
Confidence 1 46777665 999866678999999887 3333221 000000 011111112
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC----CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCC
Q 043646 362 MIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP----NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKP 437 (625)
Q Consensus 362 ~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~----l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~ 437 (625)
...++++.+ +. +.+.++.+++.+++++.|.+ .+.+....+ .+.++.+.+......+. ........
T Consensus 312 aa~aal~~~--~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~--~~~~~~~~ 380 (434)
T 3l44_A 312 SGIACLEVL--QQ---EGLYEKLDELGATLEKGILEQAAKHNIDITLNR----LKGALTVYFTTNTIEDY--DAAQDTDG 380 (434)
T ss_dssp HHHHHHHHH--TS---TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE----ETTEEEEEESSSCCCSH--HHHHHSCH
T ss_pred HHHHHHHHH--Hc---ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEe----eccEEEEEEecCcccch--hhccccCH
Confidence 223334433 22 34455555556666665544 333222211 33455555432110000 00000000
Q ss_pred CChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 043646 438 LHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALE 517 (625)
Q Consensus 438 l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~ 517 (625)
.....+.+.|.+ .||.++++. .+.+|++ +.+|++|+++++++|+
T Consensus 381 ~~~~~~~~~l~~-~Gv~v~~~~---------------------------------~~~~rl~--~~~t~e~i~~~l~~l~ 424 (434)
T 3l44_A 381 EMFGKFFKLMLQ-EGVNLAPSK---------------------------------YEAWFLT--TEHTKEDIEYTIEAVG 424 (434)
T ss_dssp HHHHHHHHHHHH-TTEECCSST---------------------------------TCCEECC--TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCeEEeecC---------------------------------CCcEEEe--cccCHHHHHHHHHHHH
Confidence 012467777765 699998652 2457886 4679999999999999
Q ss_pred HHHHhh
Q 043646 518 FIAAYG 523 (625)
Q Consensus 518 ~~~~~~ 523 (625)
+++.+.
T Consensus 425 ~~l~~~ 430 (434)
T 3l44_A 425 RAFAAL 430 (434)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 219
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.79 E-value=1.2e-18 Score=188.25 Aligned_cols=339 Identities=12% Similarity=0.048 Sum_probs=205.4
Q ss_pred ceEeccCCCCCc-chHHHHHHHHHhhCCCCCCCCCCcchhhH-HHHHHHHHHHHHHHHHhC------CCCCCcEEEeCCh
Q 043646 77 RLTYADHTASGR-SLRYIEDYIINNVLPFYGNTHTSDSYVGQ-RMTKMVHEASNYIKRCLG------GGQADAIIFCGAG 148 (625)
Q Consensus 77 ~~~Yld~~~~~~-~p~~v~ea~~~~l~~~~~n~~~~~~~~~~-~~~~~~~~~~~~ia~~~g------~~~~~~vift~sG 148 (625)
..+-|+.+.... .|+.+.+++.+.+... +.+...|.... + ..+..++|+.|+++++ ++++ +|++| +|
T Consensus 57 ~~i~l~~g~~~~~~~~~v~~a~~~~l~~~--~~~~~~Y~~~~~G-~~~~~~lr~aia~~~~~~~~~~~~~~-~iv~t-~G 131 (427)
T 2hox_A 57 CSADVASGDGLFLEEYWKQHKEASAVLVS--PWHRMSYFFNPVS-NFISFELEKTIKELHEVVGNAAAKDR-YIVFG-VG 131 (427)
T ss_dssp CCEECCSCCCGGGHHHHTTSHHHHCEEEC--TTTTCSSSCSSCC-TTCCHHHHHHHHHHHHHHTCBCCTTC-EEEEE-SH
T ss_pred ceEEecCcCCCCCCCHHHHHhHHhhhhcC--CcccccCCCCCCC-ccchHHHHHHHHHHHHHhCCcCCCCC-EEEEe-CC
Confidence 445555544432 3456677776665211 01110111111 1 0112345556666554 4444 89998 89
Q ss_pred HHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHh
Q 043646 149 TTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELY 228 (625)
Q Consensus 149 ttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~ 228 (625)
++++|..++.++...... ..+++||+ |+++.+.|+.+...++..|++++.+. +|+++|+++++
T Consensus 132 ~~~al~~~~~~l~~~~~~-------~~~~~Gd~--Vlv~~P~y~~~~~~~~~~g~~~~~~~------~d~~~l~~~~~-- 194 (427)
T 2hox_A 132 VTQLIHGLVISLSPNMTA-------TPDAPESK--VVAHAPFYPVFREQTKYFDKKGYVWA------GNAANYVNVSN-- 194 (427)
T ss_dssp HHHHHHHHHHHHSCCTTT-------CTTSCCEE--EEECSSCCHHHHHHHHHSCBTTEEEE------EEGGGGTTCSC--
T ss_pred HHHHHHHHHHHHhhcccc-------ccCCCCCE--EEEeCCCcccHHHHHHHcCCeeeeec------CCHHHHHHhhc--
Confidence 999999998887200000 00367775 99999999999888888999877544 46677777665
Q ss_pred hhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCC-Cce
Q 043646 229 KAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPG-TPG 307 (625)
Q Consensus 229 ~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~-g~G 307 (625)
+++++|++++++||||.+.+ + + ++ ++..+.|+++..+... +..+. .+.++++.|++|.+|.|+ .+|
T Consensus 195 ---~~~k~v~l~~p~NPtG~~~~-~-~---l~--~~~~i~d~~~~~~~~s--~~~~~-~~~~i~~~S~SK~~g~~G~RiG 261 (427)
T 2hox_A 195 ---PEQYIEMVTSPNNPEGLLRH-A-V---IK--GCKSIYDMVYYWPHYT--PIKYK-ADEDILLFTMSKFTGHSGSRFG 261 (427)
T ss_dssp ---GGGEEEEEESSCTTTCCCCC-C-S---ST--TCEEEEECTTCSTTTS--CCCSC-BCCSEEEEEHHHHTSCGGGCCE
T ss_pred ---CCceEEEEcCCCCCcccccH-H-H---Hc--CCCEEEeecccCCCCC--ccccC-CCceEEEEeChhcCCCCCceEE
Confidence 46899999999999999999 4 2 33 6788999876532211 11111 256899999999997554 389
Q ss_pred EEEEe-ccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH-HHHHHHHH--h------hcCH
Q 043646 308 ILLIS-KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR-AALAFWVK--E------YIGY 377 (625)
Q Consensus 308 ~l~v~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~-aal~~~~~--~------~~g~ 377 (625)
+++++ +++. +.+... ......+++.+.+.+. .++.-... + ..-.
T Consensus 262 ~~~~~~~~l~--~~l~~~------------------------~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~ 315 (427)
T 2hox_A 262 WALIKDESVY--NNLLNY------------------------MTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLN 315 (427)
T ss_dssp EEEECCHHHH--HHHHHH------------------------HHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHH
T ss_pred EEEECCHHHH--HHHHHH------------------------HHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHH
Confidence 99995 5652 111100 1111234444444321 12211000 0 0113
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCcEEE--eC-CCC-------CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHh
Q 043646 378 EVIKKQEDVYIESALGRILPNQNIQV--LG-NTS-------VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLF 447 (625)
Q Consensus 378 ~~i~~~~~~l~~~l~~~L~~l~gv~v--~~-~~~-------~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L 447 (625)
+..+++.+..++++.+.|.+++++.+ +. +.. ...++++.+.-.+.. ..++++.|
T Consensus 316 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~----------------~~~~~~~l 379 (427)
T 2hox_A 316 TFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE----------------EDKDCYQT 379 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG----------------GGCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCCc----------------HHHHHHHH
Confidence 34566777788999999999888876 22 210 123456555544321 23466666
Q ss_pred hhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 448 NDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 448 ~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
++++||.+++|..|.. .++++|||++. ++++++.+++.|++++..
T Consensus 380 l~~~gI~v~pg~~f~~----------------------------~~~~~Ris~~~--~~e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 380 FQNGRINTQNGVGFEA----------------------------SSRYVRLSLIK--TQDDFDQLMYYLKDMVKA 424 (427)
T ss_dssp HHHTTEECEEGGGGTS----------------------------CTTEEEEECSS--CHHHHHHHHHHHHHHHTC
T ss_pred HHHCCEEEcCCCccCC----------------------------CCCEEEEEecC--CHHHHHHHHHHHHHHHhh
Confidence 5668999999887641 14899999983 889999999999987643
No 220
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.78 E-value=1.1e-17 Score=180.63 Aligned_cols=337 Identities=11% Similarity=0.039 Sum_probs=192.7
Q ss_pred eEeccCCCCC------cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTASG------RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~~------~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
.-|+|+.++. ..++.|.+++.+.+.....+ .+ ......+++++++++++ ..+ +++|+++|+.+
T Consensus 53 ~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~----~~-----~~~~~~~l~~~la~~~~-~~~-~v~~~~~Gsea 121 (429)
T 3k28_A 53 NEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSF----GA-----PTEIENKLAKLVIERVP-SIE-IVRMVNSGTEA 121 (429)
T ss_dssp CEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCC----SS-----CCHHHHHHHHHHHHHST-TCS-EEEEESSHHHH
T ss_pred CEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCc----CC-----CCHHHHHHHHHHHHhCC-CCC-EEEEeCChHHH
Confidence 3589887653 36889999998887542111 01 12345668888999987 344 89999655555
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC-------------------eEEEEecCC
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA-------------------EVVEIGLDD 212 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-------------------~vv~v~~~~ 212 (625)
+..++.+.. ...++++ +|+..+..|......+...|. +++.++.+
T Consensus 122 -~~~ai~~a~-------------~~~~~~~-vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 185 (429)
T 3k28_A 122 -TMSALRLAR-------------GYTGRNK-ILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYN- 185 (429)
T ss_dssp -HHHHHHHHH-------------HHHTCCE-EEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETT-
T ss_pred -HHHHHHHHH-------------HhhCCCE-EEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCC-
Confidence 444433321 0113333 444455555444333222232 23333322
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCCCcc--ccCCCCCC
Q 043646 213 NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVK--INLRSRNI 286 (625)
Q Consensus 213 ~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g~~~--id~~~~~~ 286 (625)
|+++|++++++. .+++++|+++.+++++|.+.+ +++|.++|++||+++|+|+++..-... ......+
T Consensus 186 ----d~~~le~~l~~~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~- 258 (429)
T 3k28_A 186 ----DLESVKYAFEQF--GDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYYG- 258 (429)
T ss_dssp ----CHHHHHHHHHHH--GGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSSTTHHHHHHT-
T ss_pred ----CHHHHHHHHHhC--CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchHHHHhC-
Confidence 899999999742 235788888888888999988 999999999999999999998621000 0000011
Q ss_pred CCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCC--hhHHHHHH
Q 043646 287 DGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGT--PQIVQMIR 364 (625)
Q Consensus 287 ~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt--~~~~~~~~ 364 (625)
-.+|++++| |.++++..+|++++++++ ++.+.+... .+..+| .+.++. .
T Consensus 259 ~~~di~t~s--K~~~~G~~iG~~~~~~~~--~~~~~~~~~------------------------~~~~~t~~~~~~a~-a 309 (429)
T 3k28_A 259 VTPDLTCLG--KVIGGGLPVGAYGGKAEI--MRQVAPSGP------------------------IYQAGTLSGNPLAM-A 309 (429)
T ss_dssp CCCSEEEEC--GGGGTTSCCEEEEECHHH--HTTBTTTSS------------------------BCCCCTTTTCHHHH-H
T ss_pred CCCceehhh--hhhcCCCCeEEEEEcHHH--HhhhccCCC------------------------ccccCCCCCChHHH-H
Confidence 146777655 999765568999999887 333322100 000111 222222 2
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC----CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCCh
Q 043646 365 AALAFWVKEYIGYEVIKKQEDVYIESALGRILPN----QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHG 440 (625)
Q Consensus 365 aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~ 440 (625)
++++.+ +... +.+.++.+++.+++++.|.++ +.+..... .+.++.+.+.......+. ..........
T Consensus 310 aa~aal--~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~--~~~~~~~~~~ 380 (429)
T 3k28_A 310 AGYETL--VQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHINR----AGSMIGIFFTDEPVINYD--AAKSSNLQFF 380 (429)
T ss_dssp HHHHHH--HTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEE----ETTEEEEESSSSCCCSHH--HHTTSCHHHH
T ss_pred HHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEe----eccEEEEEEecCCccccc--ccccccHHHH
Confidence 222222 2222 567777777788887777653 32222211 234455544321100000 0000000012
Q ss_pred HHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 441 PFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 441 ~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.++.+.|.+ .||.++++. .+.+|+++ .+|++|+++++++|++++
T Consensus 381 ~~~~~~l~~-~Gv~v~~~~---------------------------------~~~~r~~~--~~t~e~i~~~l~~l~~~l 424 (429)
T 3k28_A 381 AAYYREMVE-QGVFLPPSQ---------------------------------FEGLFLST--VHSDADIEATIAAAEIAM 424 (429)
T ss_dssp HHHHHHHHH-TTEECCSST---------------------------------TSCBCCCT--TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCeEEecCC---------------------------------CCCEEEEC--CCCHHHHHHHHHHHHHHH
Confidence 567777765 699998641 25578864 679999999999999988
Q ss_pred Hh
Q 043646 521 AY 522 (625)
Q Consensus 521 ~~ 522 (625)
.+
T Consensus 425 ~~ 426 (429)
T 3k28_A 425 SK 426 (429)
T ss_dssp HT
T ss_pred HH
Confidence 65
No 221
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.78 E-value=2.5e-17 Score=180.16 Aligned_cols=349 Identities=11% Similarity=0.020 Sum_probs=193.8
Q ss_pred eEeccCCC------CCcchHHHHHHHHHhhCCC-CCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHH
Q 043646 78 LTYADHTA------SGRSLRYIEDYIINNVLPF-YGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTT 150 (625)
Q Consensus 78 ~~Yld~~~------~~~~p~~v~ea~~~~l~~~-~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtt 150 (625)
..|+|..+ .|..++.|.+++.+++... +.+... +. .....++.+++.+.++++++...+ .|+|+.+|+.
T Consensus 63 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~--~~-~~~~~~l~~~la~~l~~~~~~~~~-~v~f~~sGse 138 (472)
T 1ohv_A 63 NRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPA--LG-ILPPENFVEKLRESLLSVAPKGMS-QLITMACGSC 138 (472)
T ss_dssp CEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCC--TT-TSCBTTHHHHHHHTGGGGCCTTCC-EEEEESSHHH
T ss_pred CEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccccccc--cc-cccHHHHHHHHHHHHHHhCCCCcC-EEEEeCCchh
Confidence 45888744 3556889999998875321 111100 00 011134455566666666654444 8999977777
Q ss_pred HHHHHHHHHhcccc---cc----hhhh--hhhhccCCC---CceEEEEcCCCCchhHHHHHHcCCeE-----------EE
Q 043646 151 AAIKRLQEVMGITV---PS----IMRD--KLITSLRDE---ERWVVFLGPYEHHSNLLSWRQSLAEV-----------VE 207 (625)
Q Consensus 151 aal~~l~~~l~~~~---~~----~~~~--~~~~~l~~g---d~~~Vlv~~~~h~s~~~~~~~~G~~v-----------v~ 207 (625)
++...+-.++.... .+ ..++ .....-+|| ++ +|......|.....++...|... ..
T Consensus 139 A~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~-ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~ 217 (472)
T 1ohv_A 139 SNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYS-ILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPI 217 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCE-EEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCE
T ss_pred HHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCe-EEEECCCcccccHHHHhcCCCccccccCCCCCCCcc
Confidence 74444433321000 00 0000 000000134 33 44444555655554444433211 12
Q ss_pred EecCCC-C-------------CCCHHHHHHHHHHhhh-CCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEE
Q 043646 208 IGLDDN-G-------------LLDIEALRSQLELYKA-AKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACF 268 (625)
Q Consensus 208 v~~~~~-~-------------~ld~~~L~~~l~~~~~-~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~viv 268 (625)
++.... . ..|+++|+++|++... ..++++|+++.++|++|.+.| +++|.++|++||+++|+
T Consensus 218 ~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~ 297 (472)
T 1ohv_A 218 APFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLV 297 (472)
T ss_dssp ECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence 232210 0 1268899999874211 127899999999999999888 99999999999999999
Q ss_pred eccCc-CCCcc--ccCCCCCCC-CCcEEEEcCCCC-CCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccc
Q 043646 269 DFAAS-GPYVK--INLRSRNID-GYDAIFLATHKF-LGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTL 343 (625)
Q Consensus 269 D~A~~-~g~~~--id~~~~~~~-~~D~v~~S~hK~-lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~ 343 (625)
|++++ +|... +.+..++.. .+|++++| |+ ++ | |+++ ++++ ....+...+ ++
T Consensus 298 DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~s--K~~l~---G-G~~~-~~~~---~~~~~~~~~-~T------------- 353 (472)
T 1ohv_A 298 DEVQTGGGSTGKFWAHEHWGLDDPADVMTFS--KKMMT---G-GFFH-KEEF---RPNAPYRIF-NT------------- 353 (472)
T ss_dssp ECTTTTTTTTSSSSGGGGGCCSSCCSEEEEC--GGGSS---E-EEEE-CGGG---SCSSSSSSC-CS-------------
T ss_pred eCcccCCCCCCCchhccccCCCCCCCEEEEc--ccccc---C-CccC-chhh---ccccccccc-Cc-------------
Confidence 99987 44432 233332110 27888766 98 55 2 6655 5444 111111110 00
Q ss_pred cccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC----Cc-EEEeCCCCCCCcceEEEE
Q 043646 344 YLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN----QN-IQVLGNTSVKRQAILSFL 418 (625)
Q Consensus 344 ~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~g-v~v~~~~~~~~~~i~~f~ 418 (625)
..+.+.....+.++++.+. . +.+.++.+.+++++++.|.++ |+ +..+.+ .+.++.|.
T Consensus 354 ---------~~~~~~~~aaa~aal~~~~--~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~----~g~~~~~~ 415 (472)
T 1ohv_A 354 ---------WLGDPSKNLLLAEVINIIK--R---EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRG----RGTFCSFD 415 (472)
T ss_dssp ---------SSSCHHHHHHHHHHHHHHH--H---TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEE----ETTEEEEE
T ss_pred ---------cCccHHHHHHHHHHHHHHH--h---CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecC----CceEEEEE
Confidence 0122222233345555542 2 235567777777777777553 42 332222 24555553
Q ss_pred eccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEE
Q 043646 419 VYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRI 498 (625)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRi 498 (625)
+... .....+++.|.+ +||.++++. .+++||
T Consensus 416 ~~~~---------------~~~~~~~~~l~~-~Gv~~~~~g---------------------------------~~~iRi 446 (472)
T 1ohv_A 416 TPDE---------------SIRNKLISIARN-KGVMLGGCG---------------------------------DKSIRF 446 (472)
T ss_dssp CSSH---------------HHHHHHHHHHHH-TTEECEEET---------------------------------TTEEEE
T ss_pred eCCh---------------hHHHHHHHHHHH-CCeEEecCC---------------------------------CCEEEE
Confidence 3210 013567887865 799987531 278999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 499 TFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 499 s~~~~~t~edid~ll~aL~~~~~~ 522 (625)
++++.+|++|+++++++|++++.+
T Consensus 447 ~~~~~~t~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 447 RPTLVFRDHHAHLFLNIFSDILAD 470 (472)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988764
No 222
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.77 E-value=2.9e-17 Score=177.10 Aligned_cols=202 Identities=10% Similarity=0.064 Sum_probs=128.1
Q ss_pred eEeccCCCCC------cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTASG------RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~~------~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
.-|+|..++. ..++.|.+++.+.+.... +.. + ..+...+++++++++++ +.+ +|+|++ |.++
T Consensus 52 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~-~-----~~~~~~~la~~l~~~~~-~~~-~v~~~~-ggse 119 (427)
T 3fq8_A 52 NRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGT---SFG-A-----PCALENVLAEMVNDAVP-SIE-MVRFVN-SGTE 119 (427)
T ss_dssp CEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCS---CCS-S-----CCHHHHHHHHHHHHHST-TCS-EEEEES-SHHH
T ss_pred CEEEECCCchhhhccCCCCHHHHHHHHHHHHhCC---CcC-C-----CCHHHHHHHHHHHHhCC-CCC-EEEEeC-CHHH
Confidence 3488876553 358899999998885431 110 1 23456778899999998 444 899985 4555
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC-------------------CeEEEEecCC
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL-------------------AEVVEIGLDD 212 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G-------------------~~vv~v~~~~ 212 (625)
++..++.... ....+++ +|+..+..|..........| ..++.++.+
T Consensus 120 a~~~al~~a~-------------~~~~~~~-vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 184 (427)
T 3fq8_A 120 ACMAVLRIMR-------------AYTGRDK-IIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN- 184 (427)
T ss_dssp HHHHHHHHHH-------------HHHCCCE-EEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-
T ss_pred HHHHHHHHHH-------------HhhCCCE-EEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-
Confidence 4555543221 0112233 44444544443321111111 124445543
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCCCcc--ccCCCCCC
Q 043646 213 NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVK--INLRSRNI 286 (625)
Q Consensus 213 ~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g~~~--id~~~~~~ 286 (625)
|+++|++++++. .+++++|+++.++|++|.+.+ +++|.++|++||+++|+|++++.-... ......+
T Consensus 185 ----d~~~le~~l~~~--~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~- 257 (427)
T 3fq8_A 185 ----DLEAVKALFAEN--PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKFG- 257 (427)
T ss_dssp ----CHHHHHHHHHHS--TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTHHHHHTT-
T ss_pred ----CHHHHHHHHHhC--CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchhhHhcC-
Confidence 899999999842 236889999999999999999 999999999999999999998721000 0011111
Q ss_pred CCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 287 DGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 287 ~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
-.+|++++| |.+++...+|++++++++
T Consensus 258 ~~~di~t~s--K~~~~G~~~G~~~~~~~~ 284 (427)
T 3fq8_A 258 VTPDLTTLG--KIIGGGLPVGAYGGKREI 284 (427)
T ss_dssp CCCSEEEEC--GGGGTTSSCEEEEECHHH
T ss_pred CCCChhhhh--hhhhCCcceEEEEEcHHH
Confidence 146877666 999843348999999887
No 223
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.77 E-value=1.4e-16 Score=171.90 Aligned_cols=201 Identities=13% Similarity=0.113 Sum_probs=122.8
Q ss_pred eEeccCCCCC------cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTASG------RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~~------~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
.-|+|..++. ..++.|.+++.+.+.....+ . + ..+...+++++++++++ ..+ .++|+++|+.+
T Consensus 53 ~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~---~-~-----~~~~~~~la~~l~~~~~-~~~-~v~~~~sGsea 121 (429)
T 4e77_A 53 KAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSF---G-A-----PTEMEVKMAQLVTDLVP-TMD-MVRMVNSGTEA 121 (429)
T ss_dssp CEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCC---S-S-----CCHHHHHHHHHHHHHST-TCS-EEEEESSHHHH
T ss_pred CEEEECCCchhccccCCCCHHHHHHHHHHHHhCccc---C-C-----CCHHHHHHHHHHHhhCC-CCC-EEEEeCcHHHH
Confidence 4589887654 35789999999988643211 0 1 12456778899999987 444 89999555555
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC-------------------eEEEEecCC
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA-------------------EVVEIGLDD 212 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-------------------~vv~v~~~~ 212 (625)
+..++.+.. ...++++ +|+.....|......+...|. .+..++.
T Consensus 122 -~~~al~~a~-------------~~~~~~~-ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 184 (429)
T 4e77_A 122 -TMSAIRLAR-------------GYTGRDK-IIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTY-- 184 (429)
T ss_dssp -HHHHHHHHH-------------HHHCCCE-EEEETTCCCC------------------CCCTTSCGGGGTTEEEECT--
T ss_pred -HHHHHHHHH-------------HhhCCCE-EEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCC--
Confidence 444444321 0112333 444445555444322211111 2223332
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcC---CCccccCCCCC
Q 043646 213 NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG---PYVKINLRSRN 285 (625)
Q Consensus 213 ~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~---g~~~id~~~~~ 285 (625)
.|+++|++++++. .+++++|+++.+++.+|.+.| +++|.++|++||+++|+|++++. |. .......+
T Consensus 185 ---~d~~~le~~l~~~--~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~-~~~~~~~~ 258 (429)
T 4e77_A 185 ---NDLASVRQAFEQY--PQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVAL-AGAQDYYH 258 (429)
T ss_dssp ---TCHHHHHHHHHHS--TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBT-TCHHHHTT
T ss_pred ---CCHHHHHHHHHhc--CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCc-chHHHhcC
Confidence 2899999999842 235778887777777888888 99999999999999999999872 11 11111111
Q ss_pred CCCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 286 IDGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 286 ~~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
. .+|++++| |.+++...+|++++++++
T Consensus 259 ~-~pdi~t~s--K~~~~G~~~G~~~~~~~~ 285 (429)
T 4e77_A 259 V-IPDLTCLG--KIIGGGMPVGAFGGRREV 285 (429)
T ss_dssp C-CCSEEEEE--GGGGTTSCCEEEEECHHH
T ss_pred C-CCCeeeec--ccccCCCCeEEEEECHHH
Confidence 1 45877555 999865568999998887
No 224
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.76 E-value=4.4e-18 Score=183.50 Aligned_cols=193 Identities=11% Similarity=0.014 Sum_probs=141.7
Q ss_pred HHHHHHHHHhhCC-CCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCC-cEEEeCChHHHHHHHHHHHhcccccchh
Q 043646 91 RYIEDYIINNVLP-FYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQAD-AIIFCGAGTTAAIKRLQEVMGITVPSIM 168 (625)
Q Consensus 91 ~~v~ea~~~~l~~-~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~-~vift~sGttaal~~l~~~l~~~~~~~~ 168 (625)
..|++++.+.... ...++.. .+.++. ...+++++++++++|++... .++|+ +|+ +++..++.++
T Consensus 38 ~~vl~A~~~~~~~~~~~~~~~-g~~y~~---~~~~~l~~~la~~~g~~~~~~~i~~~-sGt-~Ai~~al~al-------- 103 (431)
T 3ht4_A 38 FRVLESFGKHKISDSHFIPTT-GYGYDD---IGRDTLEKVYADVFGAEAGLVRPQII-SGT-HAISTALFGI-------- 103 (431)
T ss_dssp HHHHHHHHHTTCCGGGSCCCC-TTCCSC---HHHHHHHHHHHHHTTCSEECCBTTSC-SHH-HHHHHHHHTT--------
T ss_pred HHHHHHHHHhchhhhhcCCCC-CCCCCh---hhHHHHHHHHHHHhCCCcccccceee-CHH-HHHHHHHHHh--------
Confidence 4677777665321 1122222 122222 23678999999999987541 22365 675 5666666555
Q ss_pred hhhhhhccCCCCceEEEEcC-CCCchhHHHH----------HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEE
Q 043646 169 RDKLITSLRDEERWVVFLGP-YEHHSNLLSW----------RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLG 237 (625)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~-~~h~s~~~~~----------~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv 237 (625)
+++||+ |+++. ..|.+....+ +..|++++.++.++++.+|+++|+++++ +++++|
T Consensus 104 -------~~~Gd~--Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~-----~~tk~V 169 (431)
T 3ht4_A 104 -------LRPGDE--LLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIH-----SNTKMI 169 (431)
T ss_dssp -------CCTTCE--EEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCC-----TTEEEE
T ss_pred -------CCCCCE--EEEeCCCCchhHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcC-----CCCeEE
Confidence 578886 88887 8888876544 3369999999998889999999999997 589999
Q ss_pred EEec----ccCccccccCHHHHHHHHHH--cCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCC---CCCceE
Q 043646 238 SFSA----CSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGG---PGTPGI 308 (625)
Q Consensus 238 ~~~~----~~n~TG~~~~l~~I~~la~~--~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lgg---p~g~G~ 308 (625)
++++ +++++|.+.++++|+++|++ +|+++++|++++.+........+ ++|+++.|++|++|| |.| |+
T Consensus 170 ~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~~~---g~Di~~~S~sK~lgg~~~~~G-G~ 245 (431)
T 3ht4_A 170 GIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCHV---GADLMAGSLIKNPGGGIVKTG-GY 245 (431)
T ss_dssp EEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGGGT---TCSEEEEETTSGGGTTTCSSC-EE
T ss_pred EEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcccc---CCeEEEcCccccCCCCCCCce-EE
Confidence 9996 55555666789999999999 99999999999877643333333 789999999999876 666 99
Q ss_pred EEEeccc
Q 043646 309 LLISKAL 315 (625)
Q Consensus 309 l~v~~~~ 315 (625)
+++++++
T Consensus 246 v~~~~~l 252 (431)
T 3ht4_A 246 IVGKEQY 252 (431)
T ss_dssp EEECHHH
T ss_pred EEecHHH
Confidence 9998876
No 225
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.76 E-value=1.5e-17 Score=178.13 Aligned_cols=326 Identities=14% Similarity=0.048 Sum_probs=193.1
Q ss_pred CcchHHHHHHHHHhh-CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCC-cEEEeCChHHHHHHHHHHHhcc
Q 043646 87 GRSLRYIEDYIINNV-LPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QAD-AIIFCGAGTTAAIKRLQEVMGI 162 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l-~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~-~vift~sGttaal~~l~~~l~~ 162 (625)
.+.++.|.++.. .+ .. .....|....+..++.+.+.+++.+..+.. +++ +++.| +|++.++..++.++.
T Consensus 46 ~~~~~~v~~a~~-~~~~~----~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t-~G~~~al~~~~~~l~- 118 (405)
T 3k7y_A 46 LHIFDSVLNADK-LVTEN----YKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQC-IGGTGAIFVLLEFLK- 118 (405)
T ss_dssp BCCCHHHHHHHH-HHHHH----CCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEE-EHHHHHHHHHHHHHH-
T ss_pred CcccHHHHHHHH-HhcCC----CCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEc-CchHHHHHHHHHHHH-
Confidence 456778888865 22 11 001112222233445555555543333322 222 35777 788899999888772
Q ss_pred cccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEec-CC-CCCCCHHHHHHHHHHhhhCCCCeEEEEe
Q 043646 163 TVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGL-DD-NGLLDIEALRSQLELYKAAKRPMLGSFS 240 (625)
Q Consensus 163 ~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~-~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~ 240 (625)
.+.| |+ |+++.+.|+.+...++..|++++.+|+ ++ +..+|+++|++++++. +++++++++
T Consensus 119 ------------~~~~-d~--Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~i~l~ 180 (405)
T 3k7y_A 119 ------------MLNV-ET--LYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNI---PNGSSVILQ 180 (405)
T ss_dssp ------------TTTC-CE--EEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHS---CSSCEEEEC
T ss_pred ------------hcCC-CE--EEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhC---CCCeEEEEe
Confidence 1226 75 999999999999889999999999998 33 4689999999999742 356788886
Q ss_pred cc-cCccccccC---HHHHHHHHHHcCCEEEEeccCcCCC-ccc-----cCCCC-CCCCCcEEEEcCCCCCCCCC-CceE
Q 043646 241 AC-SNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY-VKI-----NLRSR-NIDGYDAIFLATHKFLGGPG-TPGI 308 (625)
Q Consensus 241 ~~-~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~-~~i-----d~~~~-~~~~~D~v~~S~hK~lggp~-g~G~ 308 (625)
.+ +||||.+.+ +++|+++|++||+++++|+++..-. ... .+..+ ....--+++.|++|.|+.|+ .+|+
T Consensus 181 ~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~ 260 (405)
T 3k7y_A 181 ISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGA 260 (405)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccccceE
Confidence 65 899999977 5668889999999999999965211 110 01111 01122366779999998443 4899
Q ss_pred EEE---eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHH-HHH-HHHHHHH-HHh--hcCHHHH
Q 043646 309 LLI---SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV-QMI-RAALAFW-VKE--YIGYEVI 380 (625)
Q Consensus 309 l~v---~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~-~~~-~aal~~~-~~~--~~g~~~i 380 (625)
+++ ++++. ..+. ..... ..+.....++.. +.+ .+++.-- +.+ ....+.+
T Consensus 261 ~~~~~~~~~~~--~~~~--------------------~~l~~-~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~ 317 (405)
T 3k7y_A 261 LHIVCKNQEEK--KIVF--------------------NNLCF-IVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQL 317 (405)
T ss_dssp EEEECSSHHHH--HHHH--------------------HHHHH-HHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred EEEEeCCHHHH--HHHH--------------------HHHHH-HHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 875 22221 0000 00000 001112223322 221 1112110 000 0113345
Q ss_pred HHHHHHHHHHHHHhhC----CCC---cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCe
Q 043646 381 KKQEDVYIESALGRIL----PNQ---NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGI 453 (625)
Q Consensus 381 ~~~~~~l~~~l~~~L~----~l~---gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI 453 (625)
+++.+..++++.+.|. ++. ++++..+ +++.+.|.-.+ . ++++.| +++||
T Consensus 318 ~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p----~gg~f~~~~l~------------------~-~~~~~L-~~~gV 373 (405)
T 3k7y_A 318 SQRITNNRILFFNKLETYQKKYNLNYDWNVYKK----QRGLFSFVPLL------------------A-KIAEHL-KTHHI 373 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSS----CCSSEEECGGG------------------G-GGTTTT-TTTTE
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCCCccccC----CceEEEecCCC------------------H-HHHHHH-HHCCE
Confidence 5667777888888887 652 1344443 45666654332 1 334567 67899
Q ss_pred eeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 454 QARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 454 ~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.+.+| + |||++. .+++++++++++|++++.+
T Consensus 374 ~v~p~-----------------------------------~--Ris~a~-~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 374 YIINN-----------------------------------G--RINVSG-ITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp ECCTT-----------------------------------S--EEEGGG-CCTTHHHHHHHHHHHHHHC
T ss_pred eecCC-----------------------------------C--eEEEec-cCHHHHHHHHHHHHHHHhh
Confidence 98742 3 999952 4679999999999998764
No 226
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.76 E-value=5.7e-17 Score=175.22 Aligned_cols=337 Identities=12% Similarity=0.023 Sum_probs=191.2
Q ss_pred eEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
..|+|..+. +..++.|.+++.+.+... . +.. + ..+...+++++++++++ ..+ +|+|+++|+.+
T Consensus 56 ~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~--~-~~~-~-----~~~~~~~l~~~la~~~~-~~~-~v~~~~sgseA 124 (434)
T 2epj_A 56 ARIVDLVLAYGPLILGHKHPRVLEAVEEALARG--W-LYG-A-----PGEAEVLLAEKILGYVK-RGG-MIRFVNSGTEA 124 (434)
T ss_dssp CEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC--S-CCS-S-----CCHHHHHHHHHHHHHHC-TTC-EEEEESSHHHH
T ss_pred CEEEEcccchhcccCCCCCHHHHHHHHHHHHhC--C-CCC-C-----CCHHHHHHHHHHHHhCC-CCC-EEEEeCCHHHH
Confidence 357787543 346789999999888542 1 111 1 23456778899999985 334 89999555554
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH--------------HcCC------eEEEEecC
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR--------------QSLA------EVVEIGLD 211 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~--------------~~G~------~vv~v~~~ 211 (625)
+..++.+.. .+.++++ |++....|+....... ..|+ .++.++.
T Consensus 125 -~~~al~~ar-------------~~~~~~~--vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~- 187 (434)
T 2epj_A 125 -TMTAIRLAR-------------GYTGRDL--ILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY- 187 (434)
T ss_dssp -HHHHHHHHH-------------HHHCCCE--EEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-
T ss_pred -HHHHHHHHH-------------HhhCCCe--EEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-
Confidence 555554410 0123343 4444444443221110 1232 3556664
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCCCcc---ccCCCC
Q 043646 212 DNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVK---INLRSR 284 (625)
Q Consensus 212 ~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g~~~---id~~~~ 284 (625)
.|+++|++++++. .+++++|+++.++++||.+.| +++|.++|++||+++|+|++++ +... ......
T Consensus 188 ----~d~~~le~~l~~~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~~~~~~~~ 260 (434)
T 2epj_A 188 ----NDVEALERVFAEY--GDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GFRLGLEGAQGYF 260 (434)
T ss_dssp ----TCHHHHHHHHHHH--GGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TTTSSTTHHHHHH
T ss_pred ----CCHHHHHHHHHhC--CCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-ceeCCcchhhHHh
Confidence 2899999999742 136788888888888999988 9999999999999999999988 2210 111111
Q ss_pred CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhc-CCChhHHHHH
Q 043646 285 NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN-GGTPQIVQMI 363 (625)
Q Consensus 285 ~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~ 363 (625)
+. .+|++++ +|++++...+|++++++++ ++.+.+. +... .... .+.+......
T Consensus 261 ~~-~~di~s~--sK~l~~G~~~G~v~~~~~~--~~~l~~~--~~~~-------------------~~~t~~~~~~~~aa~ 314 (434)
T 2epj_A 261 NI-EGDIIVL--GKIIGGGFPVGAVAGSREV--MSLLTPQ--GKVF-------------------NAGTFNAHPITMAAG 314 (434)
T ss_dssp TC-CCSEEEE--EGGGGTTSSCEEEEECHHH--HTTBTTT--SSBC-------------------CCCTTTTCHHHHHHH
T ss_pred CC-CCCeeee--cchhcCCcceeeeeecHHH--HHhhccC--CCcc-------------------cCCCCCcCHHHHHHH
Confidence 11 4687655 5999863357999999887 3333221 0000 0000 1122222223
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC----CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCC
Q 043646 364 RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN----QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLH 439 (625)
Q Consensus 364 ~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~ 439 (625)
.++++.+ +. +.+.++.+++.+++.+.|.++ +....+.+ .+.++.+.+.......+. .........
T Consensus 315 ~a~l~~~--~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~--~~~~~~~~~ 383 (434)
T 2epj_A 315 LATLKAL--EE---EPVYSVSREAAKALEEAASEVLDRTGLPYTINR----VESMMQLFIGVEEVSNAA--QARKADKKF 383 (434)
T ss_dssp HHHHHHH--HH---SCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEE----ETTEEEEEETCSCCSSHH--HHTTSCHHH
T ss_pred HHHHHHH--Hh---cCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEE----eeeEEEEEEeCCCcccch--hccccCHHH
Confidence 3445544 22 234566666777777777553 22111111 335555544321000000 000000012
Q ss_pred hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 440 GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 440 ~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
...+.+.|.+ +||.+++|. ...+|++ ..+|++|+++++++|+++
T Consensus 384 ~~~~~~~l~~-~Gv~v~~~~---------------------------------~~~~~~~--~~~t~e~i~~~l~~l~~~ 427 (434)
T 2epj_A 384 YVKLHEEMLR-RGVFIAPSN---------------------------------LEAVFTG--LPHQGEALEIAVEGLRSS 427 (434)
T ss_dssp HHHHHHHHHH-TTEECCSST---------------------------------TSCEECC--TTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCeEEeccC---------------------------------CCcEEEe--ccCCHHHHHHHHHHHHHH
Confidence 3567888865 799998652 1235554 578999999999999998
Q ss_pred HHh
Q 043646 520 AAY 522 (625)
Q Consensus 520 ~~~ 522 (625)
+.+
T Consensus 428 l~~ 430 (434)
T 2epj_A 428 LKT 430 (434)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 227
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.75 E-value=2.7e-16 Score=170.96 Aligned_cols=335 Identities=13% Similarity=-0.001 Sum_probs=185.9
Q ss_pred EeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 79 TYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 79 ~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
.|+|..+. +..++.|.+++.+.+... . +.. ...+..+++.+++++.++ +.+ .|+|++ |.+++
T Consensus 58 ~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~--~-~~~------~~~~~~~~la~~l~~~~~-~~~-~v~~~~-gg~eA 125 (453)
T 2cy8_A 58 VYLDFFGGHGALVLGHGHPRVNAAIAEALSHG--V-QYA------ASHPLEVRWAERIVAAFP-SIR-KLRFTG-SGTET 125 (453)
T ss_dssp EEEESCTTTTSCTTCBTCHHHHHHHHHHHTTT--C-SSC------SSCHHHHHHHHHHHHHCT-TCS-EEEEES-CHHHH
T ss_pred EEEECcccHhhcccCCCCHHHHHHHHHHHHhC--C-CCC------CCCHHHHHHHHHHHhhCC-CCC-EEEEeC-CHHHH
Confidence 47887544 346789999999888542 1 111 134567788889988886 444 899984 55555
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH-----------cCC------eEEEEecCCCCC
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ-----------SLA------EVVEIGLDDNGL 215 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~-----------~G~------~vv~v~~~~~~~ 215 (625)
+..++.+.. .+.++++ |++.+..|+.....+.. .|+ .+..++.
T Consensus 126 ~~~al~~ar-------------~~~~~~~--vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----- 185 (453)
T 2cy8_A 126 TLLALRVAR-------------AFTGRRM--ILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP----- 185 (453)
T ss_dssp HHHHHHHHH-------------HHHCCCE--EEEECC----------------------------CGGGEEEECT-----
T ss_pred HHHHHHHHH-------------HhhCCCE--EEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-----
Confidence 666655410 0112343 55554545433222111 133 2344443
Q ss_pred CCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCCCcccc----CCCCCCC
Q 043646 216 LDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVKIN----LRSRNID 287 (625)
Q Consensus 216 ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g~~~id----~~~~~~~ 287 (625)
.|+++|++++++. .+++++|+++.++|+||.+.| +++|.++|++||+++|+|++++ +. ..+ +...+.
T Consensus 186 ~d~~~le~~l~~~--~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~-~~g~~~~~~~~~~- 260 (453)
T 2cy8_A 186 DDIEGMREVFANH--GSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVIS-GF-RVGNHGMQALLDV- 260 (453)
T ss_dssp TCHHHHHHHHHHH--GGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TT-TTCTTHHHHHHTC-
T ss_pred CCHHHHHHHHHhc--CCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-cc-ccCchhhhHHhCC-
Confidence 3899999999742 136788888877788999888 9999999999999999999987 32 111 111111
Q ss_pred CCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhH-HHHHHHH
Q 043646 288 GYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQI-VQMIRAA 366 (625)
Q Consensus 288 ~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~-~~~~~aa 366 (625)
.+|+++ ++|+++++..+|++++++++ .+.+.+...+... .....+.+++ .....++
T Consensus 261 ~~di~s--~sK~l~~G~~~G~v~~~~~~--~~~l~~~~~~~~~-------------------~~~t~~~n~~~~aa~~aa 317 (453)
T 2cy8_A 261 QPDLTC--LAKASAGGLPGGILGGREDV--MGVLSRGSDRKVL-------------------HQGTFTGNPITAAAAIAA 317 (453)
T ss_dssp CCSEEE--EEGGGGTTSSCEEEEECHHH--HTTSSSCC----------------------------CCCCHHHHHHHHHH
T ss_pred CCcEEE--EChhhhCCcceEEEechHHH--HHHhccccCCCce-------------------eCCCCCCCHHHHHHHHHH
Confidence 468765 45999864468999999887 3343321000000 0000111222 2222334
Q ss_pred HHH-HHHhhcCHHHHHHHHHHHHHHHHHhhCCC----CcEEEeCCCCCCCcceEEEEecc-----CCCCCCccccccCC-
Q 043646 367 LAF-WVKEYIGYEVIKKQEDVYIESALGRILPN----QNIQVLGNTSVKRQAILSFLVYS-----TTNSSPENMKIERN- 435 (625)
Q Consensus 367 l~~-~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~gv~v~~~~~~~~~~i~~f~~~~-----~~~~~~~~~~~~~~- 435 (625)
++. . .+.+.++.+.+.+++.+.|.++ +.+....+ .+.++.+.+.. ..... .......
T Consensus 318 l~~~~------~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~--~~~~~~~~ 385 (453)
T 2cy8_A 318 IDTIL------EDDVCAKINDLGQFAREAMNHLFARKGLNWLAYG----RFSGFHLMPGLPPNTTDTGSI--TRAEVARP 385 (453)
T ss_dssp HHHHH------HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEC----CTTEEEEEETSCTTCCCCHHH--HTTCSCCC
T ss_pred HHHHh------hhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEE----eeeEEEEEEeccccccccccc--cccccccc
Confidence 443 2 2345566777777777777543 32222222 34555554432 00000 0000000
Q ss_pred CCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHH
Q 043646 436 KPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAA 515 (625)
Q Consensus 436 ~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~a 515 (625)
......++.+.|.+ +||.++++ +.+|++ ..++++|+++++++
T Consensus 386 ~~~~~~~l~~~l~~-~Gv~v~~~-----------------------------------~~~~l~--~~~t~~~i~~~l~~ 427 (453)
T 2cy8_A 386 DVKMIAAMRMALIL-EGVDIGGR-----------------------------------GSVFLS--AQHEREHVEHLVTT 427 (453)
T ss_dssp CHHHHHHHHHHHHH-TTEECBTT-----------------------------------TEEECC--TTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH-CCeEEeCC-----------------------------------CCEEee--ccCCHHHHHHHHHH
Confidence 00113567888865 69998421 235654 67899999999999
Q ss_pred HHHHHHhh
Q 043646 516 LEFIAAYG 523 (625)
Q Consensus 516 L~~~~~~~ 523 (625)
|++++.+.
T Consensus 428 l~~~l~~~ 435 (453)
T 2cy8_A 428 FDRVLDRL 435 (453)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 228
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.72 E-value=6.5e-17 Score=170.30 Aligned_cols=326 Identities=13% Similarity=0.064 Sum_probs=193.5
Q ss_pred HHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH-HHHhcccccchhhhhhhhccCCC-CceEEEEcCCCCchhHHHHHHcC
Q 043646 125 EASNYIKRCLGGGQADAIIFCGAGTTAAIKRL-QEVMGITVPSIMRDKLITSLRDE-ERWVVFLGPYEHHSNLLSWRQSL 202 (625)
Q Consensus 125 ~~~~~ia~~~g~~~~~~vift~sGttaal~~l-~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~h~s~~~~~~~~G 202 (625)
.+..||+.+ |.+.....+++ +|+|.++..+ +.++. . -+|+ + .|+++...|.|+.+++...|
T Consensus 121 l~ld~L~~~-G~~~~~~~flV-nGsTgg~lamilaa~r--------~-----~rpg~d--~VIvpRn~HKSv~kAliL~G 183 (501)
T 3hl2_A 121 LVLDIIKLA-GVHTVANCFVV-PMATGMSLTLCFLTLR--------H-----KRPKAK--YIIWPRIDQKSCFKSMITAG 183 (501)
T ss_dssp HHHHHHHHT-TCTTCCEEEEE-SSCHHHHHHHHHHHHH--------H-----HCTTCC--EEEEECCCCHHHHHHHHHTT
T ss_pred HHHHHHHHc-CCCCCCcEEEE-CcHHHHHHHHHHHHcC--------c-----ccCCCC--EEEEecchHHHHHHHHHHcC
Confidence 355666666 98865456777 7788644444 33331 0 0234 5 48899999999999999999
Q ss_pred CeEEEEec---CCCCCCCHHHHHHHHHHhhhCCCCeEEEEecc-cCccccccCHHHHHHHHHHcCCEEEEeccCcCCCcc
Q 043646 203 AEVVEIGL---DDNGLLDIEALRSQLELYKAAKRPMLGSFSAC-SNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVK 278 (625)
Q Consensus 203 ~~vv~v~~---~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~-~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~ 278 (625)
+++++|+. ++...+|+++++++|+++ +....++++.++ ++-.|.+.|+++|+++||+||++++||+||++-...
T Consensus 184 l~Pv~V~p~~d~~~~~id~e~le~aI~e~--ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~ 261 (501)
T 3hl2_A 184 FEPVVIENVLEGDELRTDLKAVEAKVQEL--GPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSK 261 (501)
T ss_dssp CEEEEECEEEETTEEEECHHHHHHHHHHH--CGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHH
T ss_pred CeEEEEeeeecccccCCCHHHHHHHHHhc--CCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhh
Confidence 99999976 334579999999999864 123444444444 343557799999999999999999999998874422
Q ss_pred cc---CCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCC
Q 043646 279 IN---LRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGG 355 (625)
Q Consensus 279 id---~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~g 355 (625)
.. ...+..+.+|+++.|.||++..|.|.|+++++++-. ++.+...++|. ..+
T Consensus 262 ~~~lp~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~-l~~~~~~yPGr------------------------~S~ 316 (501)
T 3hl2_A 262 CMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSF-IQEISKMYPGR------------------------ASA 316 (501)
T ss_dssp HHHHHHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCHHH-HHHHHHTSCSC------------------------BCS
T ss_pred hhhhHHHHHhcCCCcEEEecccccceeecCceEEEeCCHHH-HHHHHHhCCCC------------------------CCC
Confidence 21 011111139999999999999898756665655421 11111111110 112
Q ss_pred ChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC---cEEEeCCCCCCCcceEEEEeccCCCCCCccccc
Q 043646 356 TPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ---NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKI 432 (625)
Q Consensus 356 t~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~---gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~ 432 (625)
.| ...+..+.+.+ ...|+..+.++..++++++.++|+++. |-+++... ..+|-.-.......
T Consensus 317 Sp-sldl~~tLL~l---Gr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~---~n~is~a~tl~~~~-------- 381 (501)
T 3hl2_A 317 SP-SLDVLITLLSL---GSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTP---HNPISLAMTLKTLD-------- 381 (501)
T ss_dssp HH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCT---TCSSEEEEECTTSC--------
T ss_pred cH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCC---CCceeEEEeccccc--------
Confidence 22 22222222333 356678888999999999999998753 33444322 23332222222110
Q ss_pred cCCCCCChHHHHHHhhhhcCee---e-ecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHH
Q 043646 433 ERNKPLHGPFVATLFNDLFGIQ---A-RGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEE 508 (625)
Q Consensus 433 ~~~~~l~~~~v~~~L~~~~gI~---v-~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~ed 508 (625)
....-...++-.+|..+ +|- | ..|..- .-.++.+.+.+. . .+.-+..++-++...-++.+|
T Consensus 382 -~~~~~~~t~~gs~Lf~r-~vsG~Rvv~~~~~~-~i~g~~f~~~g~---------h---~~~~~~~yl~~a~aiG~~~~~ 446 (501)
T 3hl2_A 382 -EHRDKAVTQLGSMLFTR-QVSGARVVPLGSMQ-TVSGYTFRGFMS---------H---TNNYPCAYLNAASAIGMKMQD 446 (501)
T ss_dssp -TTTSCHHHHHHHHHHHT-TCCSCEEECTTCCE-EETTEEESSTTT---------T---SSCCSSCEEEEECCTTCCHHH
T ss_pred -ccccccHHHHHHHHHhc-CCCcceeecCCCce-EECCeeecCccc---------C---CCCCCchHHHHHHHcCCCHHH
Confidence 00111234556666442 332 1 111100 001111211110 0 012235788999888899999
Q ss_pred HHHHHHHHHHHHHhhh
Q 043646 509 FEFILAALEFIAAYGH 524 (625)
Q Consensus 509 id~ll~aL~~~~~~~~ 524 (625)
||.+++.|++++.+..
T Consensus 447 v~~~~~~l~~~~~~~~ 462 (501)
T 3hl2_A 447 VDLFIKRLDRCLKAVR 462 (501)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987654
No 229
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.72 E-value=5.1e-16 Score=162.79 Aligned_cols=353 Identities=16% Similarity=0.171 Sum_probs=207.2
Q ss_pred cchHHHHHHHHHhhCCCC--CCCCCCcchhhHHHH-HHHHHHHHHHHHHhCCCCCC---cEEEeCChHHHHHHHHHHHhc
Q 043646 88 RSLRYIEDYIINNVLPFY--GNTHTSDSYVGQRMT-KMVHEASNYIKRCLGGGQAD---AIIFCGAGTTAAIKRLQEVMG 161 (625)
Q Consensus 88 ~~p~~v~ea~~~~l~~~~--~n~~~~~~~~~~~~~-~~~~~~~~~ia~~~g~~~~~---~vift~sGttaal~~l~~~l~ 161 (625)
..++.|++++-..+.+.| +.|+.- |..|.... ++..-++++.+++||++... +|--- ||+.|++......
T Consensus 65 ~~S~aV~~a~gS~ltnKYaEGyPg~R-yYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~-SGs~AN~avy~Al-- 140 (490)
T 3ou5_A 65 FCSRAALEALGSCLNNKYSEGYPGKR-YYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPY-SGSPANLAVYTAL-- 140 (490)
T ss_dssp CCCHHHHHHHTSGGGTCCCCC-----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCS-SHHHHHHHHHHHH--
T ss_pred cCCHHHHHHhcCcccccccCCCCCcc-ccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcC-CHHHHHHHHHHHH--
Confidence 456788998877776655 345442 33454444 45556778899999998763 23343 7999887666543
Q ss_pred ccccchhhhhhhhccCCCCceEEEEcCCCCchhHH--------HHHHcCC--eEEEEecCC-CCCCCHHHHHHHHHHhhh
Q 043646 162 ITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL--------SWRQSLA--EVVEIGLDD-NGLLDIEALRSQLELYKA 230 (625)
Q Consensus 162 ~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~--------~~~~~G~--~vv~v~~~~-~~~ld~~~L~~~l~~~~~ 230 (625)
++|||+ |+..+..|...+. .....|. +++.+++++ ++.+|.+++++...+
T Consensus 141 --------------l~PGD~--ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~--- 201 (490)
T 3ou5_A 141 --------------LQPHDR--IMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARL--- 201 (490)
T ss_dssp --------------CC-CCC--EECBC----------------------------CBCEETTTTEECHHHHHHHHHH---
T ss_pred --------------cCCCCE--EEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhh---
Confidence 589997 8887766554431 1122233 455556664 688999999998886
Q ss_pred CCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEE
Q 043646 231 AKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILL 310 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~ 310 (625)
.+|++|++-.... -...|.+++.++|++.|+++++|.||-.|.+.-.+.+-....+|+++++.||.|.||.| |+++
T Consensus 202 -~kPklIi~G~SaY--~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~ADvVTtTTHKTLrGPrG-G~Il 277 (490)
T 3ou5_A 202 -FRPRLIIAGTSAY--ARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARS-GLIF 277 (490)
T ss_dssp -HCCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSSTTCSCSC-EEEE
T ss_pred -cCCCeEEECCccC--ccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccccceEEeccccccccCCCc-eEEE
Confidence 4899988865433 34679999999999999999999998765443222221123689999999999999997 9999
Q ss_pred EeccccccCCCCCcccCCceEEeeccccccccccccchhhhh---cCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 043646 311 ISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE---NGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVY 387 (625)
Q Consensus 311 v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~---~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l 387 (625)
++++.... .+.. +..+. ..+.+.+.... ..|.|-...+++.|+++............+++..+
T Consensus 278 ~~~~~~~~---~~k~--~~~~~---------~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~N 343 (490)
T 3ou5_A 278 YRKGVKAV---DPKT--GREIP---------YTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKN 343 (490)
T ss_dssp EECSEEEE---CC----CCEEE---------CCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred eccccccc---cccc--cchhH---------HHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 98865210 0100 00000 00111111111 12345444544444444311122244566677777
Q ss_pred HHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhH
Q 043646 388 IESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGH 467 (625)
Q Consensus 388 ~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~ 467 (625)
++.|.+.|.+. |++++..- .....+.+.+.+ .++++..+.+.| ++.||.+.--..+. -.
T Consensus 344 AkaLA~~L~~~-G~~vvsGg--TdnHlvLvDl~~--------------~g~tG~~ae~~L-e~agItvNkN~iP~---D~ 402 (490)
T 3ou5_A 344 ARAMADALLER-GYSLVSGG--TDNHLVLVDLRP--------------KGLDGARAERVL-ELVSITANKNTCPG---DR 402 (490)
T ss_dssp HHHHHHHHHHT-TCEEGGGS--CSSSEEEEECGG--------------GTCCHHHHHHHH-HHTTEECEEECCTT---CC
T ss_pred HHHHHHHHHhC-CCeeecCC--CCceEEEEeccc--------------cCCCHHHHHHHH-HHcCcEECCCCCCC---CC
Confidence 88888888775 89988532 122333333332 356677777777 66899876322221 00
Q ss_pred hhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecC----CCCCHHHHHHHHHHHHHHHHhh
Q 043646 468 TLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFP----YYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 468 ~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~----~~~t~edid~ll~aL~~~~~~~ 523 (625)
. ...+..|||..+ .-..++|++.+.+.|.+++..+
T Consensus 403 s---------------------p~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~~~ 441 (490)
T 3ou5_A 403 S---------------------AITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIG 441 (490)
T ss_dssp C---------------------SSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred C---------------------CCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHHhh
Confidence 0 012567999975 3457999999999999987654
No 230
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.71 E-value=4.4e-16 Score=167.68 Aligned_cols=333 Identities=13% Similarity=0.031 Sum_probs=186.2
Q ss_pred EeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 79 TYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 79 ~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
.|+|..+. +..++.|.+++.+.+... .+.. + ..+...+++++++++++ ..+ +|+|+++|+. +
T Consensus 53 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~---~~~~-~-----~~~~~~~l~~~l~~~~~-~~~-~v~~~~~g~e-a 120 (424)
T 2e7u_A 53 RYLDYVMSWGPLILGHAHPKVLARVRETLERG---LTFG-A-----PSPLEVALAKKVKRAYP-FVD-LVRFVNSGTE-A 120 (424)
T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC---SCCS-S-----CCHHHHHHHHHHHHHCT-TCC-EEEEESSHHH-H
T ss_pred EEEEccccccccccCCCCHHHHHHHHHHHHhC---CCCC-C-----CCHHHHHHHHHHHHhCC-CCC-EEEEeCCHHH-H
Confidence 47777643 456789999999888541 1111 1 23456778899999986 444 8999855555 4
Q ss_pred HHHHHHH-hcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH-------------cC------CeEEEEecCC
Q 043646 153 IKRLQEV-MGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ-------------SL------AEVVEIGLDD 212 (625)
Q Consensus 153 l~~l~~~-l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~-------------~G------~~vv~v~~~~ 212 (625)
+..++.+ +. +.++++ +|+..+..|......+.. .| .+++.++.
T Consensus 121 ~~~al~~ar~--------------~~~~~~-vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-- 183 (424)
T 2e7u_A 121 TMSALRLARG--------------YTGRPY-IVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-- 183 (424)
T ss_dssp HHHHHHHHHH--------------HHCCCE-EEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT--
T ss_pred HHHHHHHHHH--------------hhCCCE-EEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC--
Confidence 5555443 11 122343 444444444433211111 13 23555553
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCCCcc---ccCCCCC
Q 043646 213 NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVK---INLRSRN 285 (625)
Q Consensus 213 ~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g~~~---id~~~~~ 285 (625)
.|+++|++++++. .+++++|+++..+++||.+.| +++|.++ ++||+++|+|++++ +... ......+
T Consensus 184 ---~d~~~le~~l~~~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~-g~~~g~~~~~~~~~ 256 (424)
T 2e7u_A 184 ---NDPEGLREVLKRR--GEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMT-GFRLAFGGATELLG 256 (424)
T ss_dssp ---TCHHHHHHHHHHH--GGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTT-TTTSSTTHHHHHHT
T ss_pred ---CCHHHHHHHHHhC--CCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcc-ccccchhHHHHHhC
Confidence 3899999999742 135677777766666999888 9999999 99999999999988 2211 0011111
Q ss_pred CCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhc-CCChhHHHHHH
Q 043646 286 IDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN-GGTPQIVQMIR 364 (625)
Q Consensus 286 ~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~~ 364 (625)
. .+|++ +++|++++...+|++++++++ .+.+.+.. ... .... .+.+.......
T Consensus 257 ~-~~di~--s~sK~l~~G~~~G~~~~~~~~--~~~~~~~~--~~~-------------------~~~t~~~~~~~~aaa~ 310 (424)
T 2e7u_A 257 L-KPDLV--TLGKILGGGLPAAAYAGRREI--MEKVAPLG--PVY-------------------QAGTLSGNPLAMAAGL 310 (424)
T ss_dssp C-CCSEE--EECGGGGTTSSCEEEEECHHH--HTTBTTTS--SBC-------------------CCCTTCSCHHHHHHHH
T ss_pred C-Ccchh--hhhhhhhCCcceEEEEEcHHH--HhhhcccC--Ccc-------------------cCCCCCCCHHHHHHHH
Confidence 1 46876 556999864457999999887 33333210 000 0000 11222222233
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC----CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCCh
Q 043646 365 AALAFWVKEYIGYEVIKKQEDVYIESALGRILPN----QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHG 440 (625)
Q Consensus 365 aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~ 440 (625)
++++.+ +. .+.+.++.+++.+++++.|.++ +.+..+.+ .+.++.+.+.......+.. .........
T Consensus 311 aal~~~--~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~--~~~~~~~~~ 380 (424)
T 2e7u_A 311 ATLELL--EE--NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNR----VGSMITVFFTEGPVVTFQD--ARRTDTELF 380 (424)
T ss_dssp HHHHHH--HH--CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEE----ETTEEEEESSSSCCCSHHH--HTTSCHHHH
T ss_pred HHHHHH--Hh--ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEe----eceEEEEEEeCCCCcchhh--hcccCHHHH
Confidence 445544 22 1456677777788888877653 22111111 2345444432200000000 000000113
Q ss_pred HHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 441 PFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 441 ~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
..+.+.|.+ +||.+++|. ...+|++ ..++++|+++++++|+++
T Consensus 381 ~~~~~~l~~-~Gv~v~~~~---------------------------------~~~~~~~--~~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 381 KRFFHGLLD-RGIYWPPSN---------------------------------FEAAFLS--VAHREEDVEKTLEALRKA 423 (424)
T ss_dssp HHHHHHHHT-TTEECCSSS---------------------------------SSCEECC--TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCeEEeccC---------------------------------CCceEee--ccCCHHHHHHHHHHHHHh
Confidence 467787865 799998642 1235655 568999999999999875
No 231
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.67 E-value=1.6e-15 Score=162.62 Aligned_cols=340 Identities=12% Similarity=0.042 Sum_probs=197.1
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh-CCCCC-Cc--EEEeCChHHHHHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCL-GGGQA-DA--IIFCGAGTTAAIK 154 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~-g~~~~-~~--vift~sGttaal~ 154 (625)
+|-|..+..+.++.|.+|....+..- ..| .|....+..+ +++.+++++ |.... +. .+-| .|.|.++.
T Consensus 53 ~y~d~~g~~~vl~~Vk~A~~~~~~~~--~~~--~Y~p~~G~p~----lr~aia~~~~g~~~~~~~~~~~qt-~ggtga~~ 123 (420)
T 4h51_A 53 AYRDEQGRPYPLRVVRKAEQLLLDMN--LDY--EYLPISGYQP----FIDEAVKIIYGNTVELENLVAVQT-LSGTGAVS 123 (420)
T ss_dssp CCBCTTSCBCCCHHHHHHHHHHHHTT--CCC--CCCCTTCCHH----HHHHHHHHHHC---CGGGEEEEEE-EHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHhcCC--CCC--CCCCcCChHH----HHHHHHHHhcCCCccccccceeee-cCchHHHH
Confidence 58888888888899999876555321 111 1222223333 444455543 33211 12 2334 56666666
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCe-EEEEecC--CCCCCCHHHHHHHHHHhhhC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAE-VVEIGLD--DNGLLDIEALRSQLELYKAA 231 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~-vv~v~~~--~~~~ld~~~L~~~l~~~~~~ 231 (625)
..+..+... .++|||+ |+++.+.|+.+...++..|++ |...+.. .+..+|.+.+.+.+.. ..
T Consensus 124 ~a~~~l~~~-----------~~~pgd~--V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~--~~ 188 (420)
T 4h51_A 124 LGAKLLTRV-----------FDAETTP--IYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILA--AP 188 (420)
T ss_dssp HHHHHHTTT-----------SCTTTSC--EEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHH--SC
T ss_pred HHHHHHHHh-----------cCCCCCE--EEEecCCchhHHHHHHHcCCeEEEeeccccccccCCCHHHHHHHHhc--cC
Confidence 555544211 1468887 999999999998889999987 4444432 2457899999888873 23
Q ss_pred CCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcC-CCccccCCCC------CCCCCcEEEEcCCCCCC
Q 043646 232 KRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASG-PYVKINLRSR------NIDGYDAIFLATHKFLG 301 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~-g~~~id~~~~------~~~~~D~v~~S~hK~lg 301 (625)
+++++++.+.|+||||...+ +++|+++|+++++++++|+++.. .+...+.... .....-+++.|++|.|+
T Consensus 189 ~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~ 268 (420)
T 4h51_A 189 DGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMG 268 (420)
T ss_dssp SSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC
T ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccc
Confidence 57788899999999999966 67899999999999999999542 2211111000 00122366779999987
Q ss_pred CCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHH---HHh--hc
Q 043646 302 GPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFW---VKE--YI 375 (625)
Q Consensus 302 gp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~---~~~--~~ 375 (625)
.++ .+|++++...... ..... ...... ..+.....++..+...++..+. +.. ..
T Consensus 269 ~~G~RvG~~~~~~~~~~--~~~~~-----------------~~~l~~-~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~ 328 (420)
T 4h51_A 269 LYSERAGTLSLLLKDKT--KRADV-----------------KSVMDS-LIREEYTCPPAHGARLAHLILSNNELRKEWEA 328 (420)
T ss_dssp CGGGCEEEEEEECSCHH--HHHHH-----------------HHHHHH-HHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHH
T ss_pred cccCceEEEEecccCHH--HHHHH-----------------HHHHHH-hhhcccCcchHHHHHHHHHHhcCHHHHHHHHH
Confidence 554 3899988765411 00000 000000 1112223333333211111110 000 11
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCC--c-EEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcC
Q 043646 376 GYEVIKKQEDVYIESALGRILPNQ--N-IQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFG 452 (625)
Q Consensus 376 g~~~i~~~~~~l~~~l~~~L~~l~--g-v~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~g 452 (625)
-.+.++++.+.+++.+.+.|.++. + +..+.+ +.+.|+|.- ++. +.+++| +++|
T Consensus 329 ~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~----q~GmF~~~g------------------ls~-e~v~~L-~e~~ 384 (420)
T 4h51_A 329 ELSAMAERIRTMRRTVYDELLRLQTPGSWEHVIN----QIGMFSFLG------------------LSK-AQCEYC-QNHN 384 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHH----CCSSEEECC------------------CCH-HHHHHH-HHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecC----CCceEEecC------------------cCH-HHHHHH-HhCC
Confidence 245667778888888888887641 1 111111 345565532 333 445667 4589
Q ss_pred eeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Q 043646 453 IQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 453 I~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~ 524 (625)
|.+.+| | |||+. ..+++.|++++++|.+++++..
T Consensus 385 Vy~~~~-----------------------------------g--Ris~A-gl~~~ni~~~a~aI~~vvr~i~ 418 (420)
T 4h51_A 385 IFITVS-----------------------------------G--RANMA-GLTHETALMLAQTINDAVRNVN 418 (420)
T ss_dssp EECCTT-----------------------------------C--EEEGG-GCCHHHHHHHHHHHHHHHC---
T ss_pred EEEcCC-----------------------------------C--EEEec-cCCHHHHHHHHHHHHHHHHHhh
Confidence 987521 3 99985 3588999999999999987654
No 232
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.62 E-value=3.7e-14 Score=152.82 Aligned_cols=338 Identities=16% Similarity=0.137 Sum_probs=196.0
Q ss_pred eEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
.-|+|..++ |-..+.|.+++.+++.... +...+ .....++.+.|++.+.. . +.|.|++||+++
T Consensus 87 ~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~---~~~~~------~~~~~~lae~l~~~~p~-~-~~v~f~~SGsEA 155 (454)
T 4ao9_A 87 HRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGI---NLTGH------NLLEGRLARLICERFPQ-I-EQLRFTNSGTEA 155 (454)
T ss_dssp CEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCS---CCCSE------ESSHHHHHHHHHHHSTT-C-SEEEEESSHHHH
T ss_pred CEEEEccccHHhhcccCCCHHHHHHHHHHHhcCC---CccCC------cHHHHHHHHHHHHhCCC-C-CEEEEeCchHHH
Confidence 458886543 4467899999998885421 11111 11234567788888753 2 379999899998
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH-----cCCeEEEEecCCCCCCCHHHHHHHHH
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ-----SLAEVVEIGLDDNGLLDIEALRSQLE 226 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~-----~G~~vv~v~~~~~~~ld~~~L~~~l~ 226 (625)
+...+-.++.. .|.+.+|.....+|......... .......+|.+ |++.+++.++
T Consensus 156 ~e~AiklAr~~---------------tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n-----d~~~l~~~l~ 215 (454)
T 4ao9_A 156 NLMALTAALHF---------------TGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN-----DAQTARAQIE 215 (454)
T ss_dssp HHHHHHHHHHH---------------HTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT-----CHHHHHHHHH
T ss_pred HHHHHHHHHhc---------------ccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCc-----hHHHHHHHHh
Confidence 66665444421 12222344444455433211111 11234444443 8999999998
Q ss_pred HhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCCCccccC--CCCCCCCCcEEEEcCCCCC
Q 043646 227 LYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVKINL--RSRNIDGYDAIFLATHKFL 300 (625)
Q Consensus 227 ~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g~~~id~--~~~~~~~~D~v~~S~hK~l 300 (625)
++ .+++.+|++..+....|.+.| +++|.++|++||+++|+|+++. |-..... ...+. .+|+++++ |.+
T Consensus 216 ~~--~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~gv-~PDi~t~g--K~l 289 (454)
T 4ao9_A 216 RH--GPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT-SRLAPHGLANKLGI-RSDLTTLG--KYI 289 (454)
T ss_dssp HT--GGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG-GGGSTTCHHHHHTC-CCSEEEEE--GGG
T ss_pred hc--CCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc-CCCccccchhccCC-CCcEEEec--ccc
Confidence 42 346889999999999999988 8999999999999999999987 2111000 00111 46998887 888
Q ss_pred CCCCCceEEEEeccccccCCCCCcc---cCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCH
Q 043646 301 GGPGTPGILLISKALYQLGSSPPST---CGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGY 377 (625)
Q Consensus 301 ggp~g~G~l~v~~~~~~l~~~~p~~---~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~ 377 (625)
|+...+|++++++++. +.+.|.. ..++| ..|.|-.++...++++.+ -.
T Consensus 290 ggG~Piga~~~~~ei~--~~~~~~~~~~~h~~T----------------------~~gnPla~AAala~L~~l-----~~ 340 (454)
T 4ao9_A 290 GGGMSFGAFGGRADVM--ALFDPRTGPLAHSGT----------------------FNNNVMTMAAGYAGLTKL-----FT 340 (454)
T ss_dssp GTTSSCEEEEECHHHH--GGGCTTTCSCCCCCT----------------------TTTCHHHHHHHHHHHHHT-----SC
T ss_pred CCCCcceeeeeHHHHH--HHHhhccCCccccCC----------------------CCCCHHHHHHHHHHHHHH-----hc
Confidence 7666689999999883 3332211 01111 012333333333444433 22
Q ss_pred HHHHHHHHHHHHHHHHhhCCC----Cc-EEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCCh---HHHHHHhhh
Q 043646 378 EVIKKQEDVYIESALGRILPN----QN-IQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHG---PFVATLFND 449 (625)
Q Consensus 378 ~~i~~~~~~l~~~l~~~L~~l----~g-v~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~---~~v~~~L~~ 449 (625)
+.+.++..++.+++++.|+++ +- .++.+ .+.++.+....+.... .......+. ..+...|++
T Consensus 341 ~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg-----~G~m~gi~f~~~~~~~-----~~~~~~~d~~~~~~~~~~ll~ 410 (454)
T 4ao9_A 341 PEAAGALAERGEALRARLNALCANEGVAMQFTG-----IGSLMNAHFVQGDVRS-----SEDLAAVDGRLRQLLFFHLLN 410 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEE-----ETTEEEEESCCSCCCS-----GGGGTTCCHHHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHHHHHHhhCCCCEEEee-----eceEEEEEEecCCCCC-----HHHHHhhhHHHHHHHHHHHHH
Confidence 455666777777777776543 21 12221 2344554443221000 000011111 234445555
Q ss_pred hcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhhcccC
Q 043646 450 LFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHRFLPL 529 (625)
Q Consensus 450 ~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~~~~~ 529 (625)
.||.+++ .+.+.++.. +|++|||+++++|++++.+...++|.
T Consensus 411 -~Gv~~~p-----------------------------------~~~~~~s~~--~T~~dId~~l~al~~~l~~~~a~lPr 452 (454)
T 4ao9_A 411 -EDIYSSP-----------------------------------RGFVVLSLP--LTDADIDRYVAAIGSFIGGHGALLPR 452 (454)
T ss_dssp -TTEECCT-----------------------------------TCEEECCTT--CCHHHHHHHHHHHHHHHHHSGGGSCB
T ss_pred -CCEEEcC-----------------------------------CCCEEEeCC--CCHHHHHHHHHHHHHHHHhccccCCC
Confidence 5988762 144555554 69999999999999999988777764
No 233
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.61 E-value=3.8e-13 Score=145.49 Aligned_cols=373 Identities=16% Similarity=0.088 Sum_probs=209.6
Q ss_pred HHHHHHHHHhhcCC-------------CccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCc
Q 043646 52 EEKLAWLRSQIIGN-------------DVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSD 112 (625)
Q Consensus 52 ~~~~~~lr~~~~~~-------------~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~ 112 (625)
.+.+++.++.+++. +..+.+..| .-|+|..+ .|-..+.|.+++.+++.... |...
T Consensus 28 ~~l~~r~~~~~~~~~~~~~P~~i~~a~G~~l~D~dG---~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~---~~~~ 101 (456)
T 4atq_A 28 QALAERRSAVVAAGVASGVPVYVEDADGGIIRDVDG---NSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFT---HTCF 101 (456)
T ss_dssp HHHHHHHHHHBCTTCCCSCSSCEEEEETTEEEETTS---CEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCS---CCTT
T ss_pred HHHHHHHHHhCCCCCCCCCCCeEEeeecCEEEeCCC---CEEEEccccHHHHhcCCCCHHHHHHHHHHHhhcc---Cccc
Confidence 56666666655432 233333334 35888643 45567899999988875432 1110
Q ss_pred chhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCc
Q 043646 113 SYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHH 192 (625)
Q Consensus 113 ~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~ 192 (625)
.. ...+...++.+.|.+++..+..+.++|+.||++|+-.++-.++. -.+.+.+|.....+|.
T Consensus 102 ~~---~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~---------------~t~r~~ii~~~~~yHG 163 (456)
T 4atq_A 102 MV---TPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARL---------------ATGRDAVVAFDHAYHG 163 (456)
T ss_dssp TT---SCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHH---------------HHCCCEEEEETTCCCC
T ss_pred Cc---cCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhh---------------hhcCCeEEEEecccCC
Confidence 00 01223445677888888654434788988888884444433321 0122223444455555
Q ss_pred hhHHHHHHcC-------------CeEEEEecCC------CCCCCHHHHHHHHHH---hhhCCCCeEEEEecccCcccccc
Q 043646 193 SNLLSWRQSL-------------AEVVEIGLDD------NGLLDIEALRSQLEL---YKAAKRPMLGSFSACSNVTGIYS 250 (625)
Q Consensus 193 s~~~~~~~~G-------------~~vv~v~~~~------~~~ld~~~L~~~l~~---~~~~~~~~lv~~~~~~n~TG~~~ 250 (625)
....++...+ -.+..+|... ....+.+.+++.++. ....+++.+|++..+....|.+.
T Consensus 164 ~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~ 243 (456)
T 4atq_A 164 RTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIV 243 (456)
T ss_dssp SSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBC
T ss_pred ccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccc
Confidence 5543433221 2456666532 112334444444432 11224678999999998889886
Q ss_pred C----HHHHHHHHHHcCCEEEEeccCcC-CCcc--ccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCC
Q 043646 251 D----TRSIARLLHQYGGFACFDFAASG-PYVK--INLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPP 323 (625)
Q Consensus 251 ~----l~~I~~la~~~g~~vivD~A~~~-g~~~--id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p 323 (625)
| +++|.++|++||+++|+|+++.. |-.. .....++. .+|+++++ |.+|+...+|++++++++ .+.+.+
T Consensus 244 p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv-~PDivt~g--K~lggg~P~~av~~~~~i--~~~~~~ 318 (456)
T 4atq_A 244 PAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGV-VPDIITMA--KGIAGGLPLSAITGRADL--LDAVHP 318 (456)
T ss_dssp CCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTC-CCSEEEEC--GGGGTTSSCEEEEEEHHH--HTTSCT
T ss_pred cchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCC-CCchhhhh--hcccCcCCceeeEecHHH--Hhcccc
Confidence 6 89999999999999999999774 2211 11111112 57999987 888766668999999998 344444
Q ss_pred cccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC----C
Q 043646 324 STCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN----Q 399 (625)
Q Consensus 324 ~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~ 399 (625)
...+ +| ..|.|-.++...+.++.+. .. .+.++.+.+.+++.+.|+++ +
T Consensus 319 ~~~~-~T----------------------f~gnpla~aaala~L~~i~--~~---~l~~~~~~~g~~l~~~L~~l~~~~~ 370 (456)
T 4atq_A 319 GGLG-GT----------------------YGGNPVACAAALAAIDTME--QH---DLNGRARHIEELALGKLRELAAELS 370 (456)
T ss_dssp TSSC-CS----------------------SSSCHHHHHHHHHHHHHHH--HT---THHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCC-CC----------------------CCCChHHHHhhHHHHHHHh--hc---cHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3221 11 1244444444456666652 22 34455555556665555432 1
Q ss_pred c--EEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhH
Q 043646 400 N--IQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRS 477 (625)
Q Consensus 400 g--v~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~ 477 (625)
. ..+++.. ..++-++.+.+..+.... ...--...+.+.+.+ +|+.+.+. + +
T Consensus 371 ~~~~~~v~~V-RG~Gl~~giel~~~~~~~--------~~~~~~~~v~~~~~~-~Gvl~~~~---g-~------------- 423 (456)
T 4atq_A 371 AGGGSVVGDI-RGRGAMLAIELVQPGSKE--------PNAELTKAVAAACLK-EGVIILTC---G-T------------- 423 (456)
T ss_dssp -----CEEEE-EEETTEEEEEEBCTTSCC--------BCHHHHHHHHHHHHH-TTEECEEE---C-T-------------
T ss_pred cccCCceEEe-eecceEEEEEEecCCCCC--------cCHHHHHHHHHHHHH-CCCEEEec---C-C-------------
Confidence 1 1111110 113345555443321100 000002356666755 69988632 1 1
Q ss_pred HHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 478 LEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 478 ~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
..+.|||.+++..|++|+|+++++|+++++.
T Consensus 424 --------------~~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 424 --------------YGNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp --------------TSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred --------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 1378999999999999999999999998753
No 234
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.37 E-value=1.1e-16 Score=173.48 Aligned_cols=344 Identities=12% Similarity=0.003 Sum_probs=190.4
Q ss_pred EeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 79 TYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 79 ~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
-|+|..++ |..++.|.+++.+++... .+. ....+...+++++|+++++ ..+ .++|+++|+.+.
T Consensus 101 ~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~---~~~------~~~~~~~~~Lae~L~~~~p-~~~-~v~~~nSGseA~ 169 (465)
T 2yky_A 101 AYVNFLGEYTAGLFGHSHPVIRAAVERALAVG---LNL------STQTENEALFAEAVCDRFP-SID-LVRFTNSGTEAN 169 (465)
Confidence 47776442 335788999998877531 010 1234567788899999985 333 688886777775
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCch-hHHHH---HHcCC--eEEEEecCCCCCCCHHHHHHHHH
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHS-NLLSW---RQSLA--EVVEIGLDDNGLLDIEALRSQLE 226 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s-~~~~~---~~~G~--~vv~v~~~~~~~ld~~~L~~~l~ 226 (625)
...+-.++. ...+++ |++....|+. ....+ ...|+ .++.++. -|+++|+++++
T Consensus 170 ~~Aik~ar~--------------~tgr~~--ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-----~d~~~l~~~l~ 228 (465)
T 2yky_A 170 LMALATATA--------------ITGRKT--VLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-----NDVEGTADLLK 228 (465)
Confidence 444322221 122343 5555544443 33222 11233 2333332 37889999887
Q ss_pred HhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCCCccc--cCCCCCCCCCcEEEEcCCCCC
Q 043646 227 LYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVKI--NLRSRNIDGYDAIFLATHKFL 300 (625)
Q Consensus 227 ~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g~~~i--d~~~~~~~~~D~v~~S~hK~l 300 (625)
+. .+++++|+++.+.+++|.+.| +++|.++|++||+++|+|++++ +.... .....+. .+|++ ++.|++
T Consensus 229 ~~--~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv-~pDi~--t~sK~l 302 (465)
T 2yky_A 229 RH--GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGI-SADLT--TLGKYI 302 (465)
Confidence 42 247889998887778998877 9999999999999999999988 42110 0111111 35765 456999
Q ss_pred CCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhc-CCChhHHHHHHHHHHHHHHhhcCHHH
Q 043646 301 GGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN-GGTPQIVQMIRAALAFWVKEYIGYEV 379 (625)
Q Consensus 301 ggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~~aal~~~~~~~~g~~~ 379 (625)
|+...+|++++++++ ++.+.+...|... .... .+.|.......++++.+ + .+.
T Consensus 303 g~G~piG~v~~~~~i--~~~l~~~~~g~~~-------------------~~~T~~~npla~aAa~aaL~~l--~---~~~ 356 (465)
T 2yky_A 303 GGGMSFGAFGGRRDL--MERFDPARDGAFA-------------------HAGTFNNNILTMSAGHAALTQI--Y---TRQ 356 (465)
Confidence 864457999999888 3344331001000 0000 12222222223444443 1 134
Q ss_pred HHHHHHHHHHHHHHhhCCCC-cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecC
Q 043646 380 IKKQEDVYIESALGRILPNQ-NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGG 458 (625)
Q Consensus 380 i~~~~~~l~~~l~~~L~~l~-gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G 458 (625)
+.++..++.++++++|.++. ...+.... ...+.++.+.+..+...++... .....-....+.+.|.+ .||.+.++
T Consensus 357 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-~g~G~~~~i~~~~~~~~~~~~~--~~~d~~~~~~~~~~ll~-~GV~v~p~ 432 (465)
T 2yky_A 357 AASDLSASGDRFRANLNRIAVENQAPLQF-TGLGSLGTIHFSRAPIRSAGDV--RAADQQLKELFFFHMLR-KGIYLAPR 432 (465)
Confidence 66777777888888887641 11121111 1234455554432000000000 00000012356666755 69988753
Q ss_pred CCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 043646 459 CACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHRFL 527 (625)
Q Consensus 459 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~~~ 527 (625)
.+ + . +++.+|++|+++++++|++++.+...++
T Consensus 433 ~~---------------------------------~-~---~s~~~t~edid~~l~~l~~~l~~~~~~~ 464 (465)
T 2yky_A 433 GM---------------------------------Y-A---LSLEIADAGRDAFAEALADFIGEQRALL 464 (465)
Confidence 21 1 1 4456899999999999999887754443
No 235
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.52 E-value=1.4e-11 Score=133.76 Aligned_cols=361 Identities=14% Similarity=0.087 Sum_probs=204.1
Q ss_pred CCCccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC
Q 043646 64 GNDVEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG 137 (625)
Q Consensus 64 ~~~~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~ 137 (625)
+.+..+.+..|+ -|+|..++ |-..+.|.+++.+++.+.... +.. .+ ...+...++.++|.++...+
T Consensus 56 g~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~-~~~---~~-~~~~~~~~lAe~L~~~~p~~ 127 (473)
T 4e3q_A 56 GEGPYIVDVNGR---RYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGY-HAF---FG-RMSDQTVMLSEKLVEVSPFD 127 (473)
T ss_dssp EETTEEEETTCC---EEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCC-CCC---TT-EEEHHHHHHHHHHHHHSSCS
T ss_pred eecCEEEeCCCC---EEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccc-ccc---cc-ccCHHHHHHHHHHHhhCCCC
Confidence 445666666664 48996543 456789999998888543111 110 00 01233445778888888765
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC-----------eEE
Q 043646 138 QADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA-----------EVV 206 (625)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-----------~vv 206 (625)
-+ .|.|+.||++|+-.++-.++... +. .-.++...+|.....+|.....++...|- .+.
T Consensus 128 ~~-~v~f~~sGsEA~e~AiKlAr~~~-----~~----~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~ 197 (473)
T 4e3q_A 128 SG-RVFYTNSGSEANDTMVKMLWFLH-----AA----EGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFV 197 (473)
T ss_dssp SC-EEEEESSHHHHHHHHHHHHHHHH-----HH----TTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEE
T ss_pred cc-EEEEeCchHHHHHHHHHHHHHHH-----Hh----cCCCCcceEEEeeceECCCccccccccccccccccCCCCCccc
Confidence 55 89999889888433332222100 00 01234433444455566555544433221 234
Q ss_pred EEecCC------CCCC-------CHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEe
Q 043646 207 EIGLDD------NGLL-------DIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFD 269 (625)
Q Consensus 207 ~v~~~~------~~~l-------d~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD 269 (625)
.++... .+.. ..+++++.+.+ ...+.+.+|++..+....|.+.| +++|.++|++||+++|+|
T Consensus 198 ~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~-~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~D 276 (473)
T 4e3q_A 198 HLTCPHYWRYGEEGETEEQFVARLARELEETIQR-EGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISD 276 (473)
T ss_dssp EECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHH-HCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCCcccccccccchhhHHHHHHHHHHHHHHHh-hCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEecc
Confidence 444321 1111 12345555553 12235788999999988898866 899999999999999999
Q ss_pred ccCcCC-Ccc--ccCCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCC-------CCcccCCceEEeecccc
Q 043646 270 FAASGP-YVK--INLRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSS-------PPSTCGGGTVNYVNAFD 338 (625)
Q Consensus 270 ~A~~~g-~~~--id~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~-------~p~~~ggg~v~~~~~~~ 338 (625)
+++... -.. .....++. .+|+++++ |.+++. ..+|++++++++.+ .+ .+... ++|
T Consensus 277 EV~tGfGRtG~~fa~e~~gv-~PDi~t~~--K~l~gG~~Pl~av~~~~~i~~--~~~~~~~~~~~~~h-g~T-------- 342 (473)
T 4e3q_A 277 EVICGFGRTGNTWGCVTYDF-TPDAIISS--KNLTAGFFPMGAVILGPELSK--RLETAIEAIEEFPH-GFT-------- 342 (473)
T ss_dssp CTTTSSSTTSSSCHHHHTTC-CCSEEEEC--GGGGTTSSCCEEEEECHHHHH--HHHHHHHHHSCCCC-CCT--------
T ss_pred CccccCCcccchhHHHhcCC-CCChHHhc--ccccCCCCCcccccccHHHHH--Hhcccccccccccc-CCC--------
Confidence 997642 111 00111111 57999887 988654 45799999988732 11 11111 111
Q ss_pred ccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhC---CCCcEEEeCCCCCCCcceE
Q 043646 339 EKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRIL---PNQNIQVLGNTSVKRQAIL 415 (625)
Q Consensus 339 ~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~---~l~gv~v~~~~~~~~~~i~ 415 (625)
..|.|-.++...+.++.+. .. .+.++.+.+.+++.+.|+ +.|.+.-+. .++-++
T Consensus 343 --------------~~Gnpla~Aaala~L~~i~--~~---~l~~~~~~~g~~l~~~L~~l~~~~~v~~vR----G~Gl~~ 399 (473)
T 4e3q_A 343 --------------ASGHPVGCAIALKAIDVVM--NE---GLAENVRRLAPRFEERLKHIAERPNIGEYR----GIGFMW 399 (473)
T ss_dssp --------------TTTCHHHHHHHHHHHHHHH--HS---SHHHHHHHHHHHHHHHHHHHTTSTTEEEEE----EETTEE
T ss_pred --------------CCCCcchhhhhhhhhhhhc--cc---cHHHHHHHHHHHHHHHHHHHhcCCCeeEEe----ecceEE
Confidence 1233433444445565552 22 344555556666666554 345543111 133455
Q ss_pred EEEeccCCCCCCccccccCCCCCC-----hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCC
Q 043646 416 SFLVYSTTNSSPENMKIERNKPLH-----GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLG 490 (625)
Q Consensus 416 ~f~~~~~~~~~~~~~~~~~~~~l~-----~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g 490 (625)
.+.+..+.. ...+.+ ...+.+.+.+ +|+.+++.
T Consensus 400 gielv~~~~---------~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~-------------------------------- 437 (473)
T 4e3q_A 400 ALEAVKDKA---------SKTPFDGNLSVSERIANTCTD-LGLICRPL-------------------------------- 437 (473)
T ss_dssp EEEECSBTT---------TTBCCCGGGCHHHHHHHHHHH-TTEECEEE--------------------------------
T ss_pred EEEEecCcc---------ccccccccHHHHHHHHHHHHH-CCcEEEec--------------------------------
Confidence 554433211 011111 2456677755 69988731
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Q 043646 491 VKPGWTRITFPYYMSNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 491 ~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~ 524 (625)
...+|+++++..|++|+|+++++|++++++..
T Consensus 438 --g~~i~l~PPL~it~~eid~~~~~l~~al~~v~ 469 (473)
T 4e3q_A 438 --GQSVVLCPPFILTEAQMDEMFDKLEKALDKVF 469 (473)
T ss_dssp --TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 26799999999999999999999999887643
No 236
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.35 E-value=1.8e-11 Score=141.63 Aligned_cols=359 Identities=13% Similarity=0.035 Sum_probs=190.9
Q ss_pred EeccCCC------CCcc-hHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 79 TYADHTA------SGRS-LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 79 ~Yld~~~------~~~~-p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
-|+|..+ .|-. .+.|.+++.+++..+...... + .+.+...++.++|+++++.+.-+.|+|+.||+++
T Consensus 381 ~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~~~-----~-~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA 454 (831)
T 4a0g_A 381 QQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFP-----E-NVYEPALKCAELLLDGVGKGWASRVYFSDNGSTA 454 (831)
T ss_dssp EEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCCCT-----T-EECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHH
T ss_pred heeeecccHhhcCCCCCCCHHHHHHHHHHHhhccccccc-----c-cCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHH
Confidence 4788654 3555 789999998887543211100 0 1123445678888888875422389999899998
Q ss_pred ---HHHHHHHHhcccccchhhhhhhhccC-------CCCceEEEEcCCCCchhHHHHHHcCCe-----------------
Q 043646 152 ---AIKRLQEVMGITVPSIMRDKLITSLR-------DEERWVVFLGPYEHHSNLLSWRQSLAE----------------- 204 (625)
Q Consensus 152 ---al~~l~~~l~~~~~~~~~~~~~~~l~-------~gd~~~Vlv~~~~h~s~~~~~~~~G~~----------------- 204 (625)
+|+++.+..... . +.. ++...+|.....+|.....++...|..
T Consensus 455 ~E~AlK~A~r~~~~~-~---------g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~ 524 (831)
T 4a0g_A 455 IEIALKMAFRKFCVD-H---------NFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLF 524 (831)
T ss_dssp HHHHHHHHHHHHHHT-T---------TC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEE
T ss_pred HHHHHHHHHHHHHhh-c---------CCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccc
Confidence 444432222100 0 000 122234445566666666555543320
Q ss_pred -----------EEEEecCCCC---------CCC------------------HHHHHHHHHHh---hhCCCCeEEEEecc-
Q 043646 205 -----------VVEIGLDDNG---------LLD------------------IEALRSQLELY---KAAKRPMLGSFSAC- 242 (625)
Q Consensus 205 -----------vv~v~~~~~~---------~ld------------------~~~L~~~l~~~---~~~~~~~lv~~~~~- 242 (625)
+..++..... .-+ .++|++.|.+. ...+++.+|++..+
T Consensus 525 ~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvv 604 (831)
T 4a0g_A 525 LDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVI 604 (831)
T ss_dssp ECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSE
T ss_pred cCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEeccc
Confidence 0112221100 011 25667766521 11245789999986
Q ss_pred cCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCccc--cCCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEecc
Q 043646 243 SNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVKI--NLRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKA 314 (625)
Q Consensus 243 ~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~i--d~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~ 314 (625)
.+..|.+.+ +++|.++|++||+++|+|+++. +|...- ....++. .+|+++++ |.+++. ..+|+++++++
T Consensus 605 qg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv-~PDiitls--K~L~gG~~Plgav~~~~~ 681 (831)
T 4a0g_A 605 HGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGC-KPDIACFA--KLLTGGMVPLAVTLATDA 681 (831)
T ss_dssp ETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSS-CCSEEEEC--GGGGTTSSCCEEEEECHH
T ss_pred ccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCC-CCcEEEEe--cccccCccCcEEEEECHH
Confidence 888898866 8999999999999999999866 332211 1111111 46888766 999763 24699999998
Q ss_pred ccccCCCCCcccCCceEEeeccccccccccccchhhhh-cCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHH----HH
Q 043646 315 LYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE-NGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVY----IE 389 (625)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~-~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l----~~ 389 (625)
+++ .+.+.... .. +.... ..|.|-.++...++++.+..+. -.+++.+....+ .+
T Consensus 682 i~~--~~~~~~~~-~~-----------------~~hg~T~~g~Pla~Aaala~L~~i~~~~-l~~~~~~~~~~l~~~l~~ 740 (831)
T 4a0g_A 682 VFD--SFSGDSKL-KA-----------------LLHGHSYSAHAMGCATAAKAIQWFKDPE-TNHNITSQGKTLRELWDE 740 (831)
T ss_dssp HHH--TTCSSCGG-GS-----------------CCCCCTTTTCHHHHHHHHHHHHHHHCTT-TCTTBCTTSSBBCCCSCH
T ss_pred HHH--HHhccccc-cc-----------------ceeecCCcccHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHH
Confidence 732 22211000 00 00001 1233444444456666652111 011111111111 12
Q ss_pred HHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhh
Q 043646 390 SALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTL 469 (625)
Q Consensus 390 ~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~ 469 (625)
.+.+.+.+.|.+.-+.. .+.++.+.+..+.... .-.......+.+.|.+ .||.++++
T Consensus 741 ~l~~~l~~~~~v~~vrg----~Gl~~~iel~~~~~~~-------~~~~~~a~~~~~~l~e-~Gv~v~p~----------- 797 (831)
T 4a0g_A 741 ELVQQISSHSAVQRVVV----IGTLFALELKADASNS-------GYASLYAKSLLIMLRE-DGIFTRPL----------- 797 (831)
T ss_dssp HHHHHHHHSTTEEEEEE----ETTEEEEEEC----------------CHHHHHHHHHHHH-TTEECCCB-----------
T ss_pred HHHHHHhhCCCceeEee----cccEEEEEEecCcccc-------ccchHHHHHHHHHHHH-CCcEEEec-----------
Confidence 23344444555543322 3355555554321000 0000113457777765 79998742
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 470 LAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 470 l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.+.+|+++++.+|++|+++++++|++++.+.
T Consensus 798 -----------------------g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 798 -----------------------GNVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp -----------------------TTEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred -----------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2679999999999999999999999987653
No 237
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=35.52 E-value=1.3e+02 Score=26.37 Aligned_cols=63 Identities=16% Similarity=0.010 Sum_probs=43.5
Q ss_pred HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcC---CEEEEec
Q 043646 198 WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYG---GFACFDF 270 (625)
Q Consensus 198 ~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g---~~vivD~ 270 (625)
++..|.+|+....+ +.++++.+++.+ .++.+|.+|... +.....+.++.+.+++.| +.+++=+
T Consensus 42 l~~~G~eVi~lG~~----~p~e~lv~aa~~----~~~diV~lS~~~--~~~~~~~~~~i~~L~~~g~~~i~v~vGG 107 (161)
T 2yxb_A 42 LRDAGFEVVYTGLR----QTPEQVAMAAVQ----EDVDVIGVSILN--GAHLHLMKRLMAKLRELGADDIPVVLGG 107 (161)
T ss_dssp HHHTTCEEECCCSB----CCHHHHHHHHHH----TTCSEEEEEESS--SCHHHHHHHHHHHHHHTTCTTSCEEEEE
T ss_pred HHHCCCEEEECCCC----CCHHHHHHHHHh----cCCCEEEEEeec--hhhHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 45579998877654 578888888775 578888887654 345566788888888754 4444433
No 238
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=32.81 E-value=2.1e+02 Score=26.09 Aligned_cols=65 Identities=17% Similarity=0.108 Sum_probs=46.7
Q ss_pred HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcC----CEEEEeccC
Q 043646 198 WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYG----GFACFDFAA 272 (625)
Q Consensus 198 ~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g----~~vivD~A~ 272 (625)
++..|.+|+.+..+ +.++.+.+++.+ .++.+|.++... |.....++++.+.+++.| +.+++=++.
T Consensus 112 l~~~G~~v~~LG~~----vp~~~l~~~~~~----~~~d~v~lS~~~--~~~~~~~~~~i~~l~~~~~~~~~~v~vGG~~ 180 (210)
T 1y80_A 112 LESGGFTVYNLGVD----IEPGKFVEAVKK----YQPDIVGMSALL--TTTMMNMKSTIDALIAAGLRDRVKVIVGGAP 180 (210)
T ss_dssp HHHTTCEEEECCSS----BCHHHHHHHHHH----HCCSEEEEECCS--GGGTHHHHHHHHHHHHTTCGGGCEEEEESTT
T ss_pred HHHCCCEEEECCCC----CCHHHHHHHHHH----cCCCEEEEeccc--cccHHHHHHHHHHHHhcCCCCCCeEEEECCC
Confidence 35579998887753 578888888875 378888888753 334566888888888764 777776653
No 239
>3o2i_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Leptospirillum rubarum}
Probab=32.28 E-value=74 Score=25.25 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.7
Q ss_pred CcEEEEecCCCCCHHHHHHHHHHHH
Q 043646 493 PGWTRITFPYYMSNEEFEFILAALE 517 (625)
Q Consensus 493 ~g~iRis~~~~~t~edid~ll~aL~ 517 (625)
.|.+||+++.-.+..++..+++++-
T Consensus 93 GGL~~I~~P~E~SK~~V~~~i~~~L 117 (125)
T 3o2i_A 93 GGLQEIGFPGELSKTEVRRRINAFL 117 (125)
T ss_dssp CCEEEEEEETTCCHHHHHHHHHHHH
T ss_pred CCeEEecCchhhhHHHHHHHHHHHh
Confidence 4889999998889999999988763
No 240
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=28.26 E-value=29 Score=36.51 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=27.9
Q ss_pred ccCccccccCHHHHHHHHHHcCCEEEEecc
Q 043646 242 CSNVTGIYSDTRSIARLLHQYGGFACFDFA 271 (625)
Q Consensus 242 ~~n~TG~~~~l~~I~~la~~~g~~vivD~A 271 (625)
+.+..|+..+++++++-||++|+-||+|.+
T Consensus 69 i~~~~Gt~~df~~lv~~aH~~Gi~VilD~V 98 (496)
T 4gqr_A 69 LCTRSGNEDEFRNMVTRCNNVGVRIYVDAV 98 (496)
T ss_dssp SCBTTBCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred eCCCCCCHHHHHHHHHHHHHCCCEEEEEEc
Confidence 566789999999999999999999999987
No 241
>2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1
Probab=27.57 E-value=17 Score=31.40 Aligned_cols=20 Identities=5% Similarity=-0.301 Sum_probs=16.0
Q ss_pred cCcccccccc------cccccccchhhhhhhhcc
Q 043646 528 PLYHFNVKAG------NWCSSQKAIKDLIDKETN 555 (625)
Q Consensus 528 ~~y~~~~~~~------~w~~~~~~~~~~~~~~~~ 555 (625)
.||.||+||| +|. .+| |+||
T Consensus 3 ~L~iYPIKSc~g~~l~~a~------~~D--R~wm 28 (136)
T 2exn_A 3 TTAYQPIAECGATTQSEAA------AYQ--KRWL 28 (136)
T ss_dssp CCCEEEETTTEEECCGGGG------GTC--CSEE
T ss_pred eEEEeccccCCceecCccC------ccC--CcEE
Confidence 5899999999 443 677 8997
No 242
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=25.04 E-value=88 Score=29.10 Aligned_cols=114 Identities=14% Similarity=0.156 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH-HHc
Q 043646 123 VHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW-RQS 201 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~-~~~ 201 (625)
++.+.+.+.+.+|.+....+++.|.|..+.. ++..+.. -..+=+.+-++.....+ .. .- ...
T Consensus 68 V~~L~~~i~~~Lg~~~~~~V~IvGaG~lG~a--La~~~~~-------------~~~g~~iVg~~D~dp~~-ki-G~~~i~ 130 (212)
T 3keo_A 68 VKKLMNFFAEILNDHSTTNVMLVGCGNIGRA--LLHYRFH-------------DRNKMQISMAFDLDSND-LV-GKTTED 130 (212)
T ss_dssp HHHHHHHHHHHTTTTSCEEEEEECCSHHHHH--HTTCCCC-------------TTSSEEEEEEEECTTST-TT-TCBCTT
T ss_pred HHHHHHHHHHHhCCCCCCEEEEECcCHHHHH--HHHhhhc-------------ccCCeEEEEEEeCCchh-cc-CceeEC
Confidence 4567788889999876657888777766522 2221110 01122223333332210 11 00 113
Q ss_pred CCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCc
Q 043646 202 LAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAAS 273 (625)
Q Consensus 202 G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~ 273 (625)
|.+|. + +++|++.+++ .+...++++.|+. ..+++++.|.+.|+--|+.+|..
T Consensus 131 GvpV~--~--------~~dL~~~v~~----~~Id~vIIAvPs~------~aq~v~d~lv~~GIk~I~nFap~ 182 (212)
T 3keo_A 131 GIPVY--G--------ISTINDHLID----SDIETAILTVPST------EAQEVADILVKAGIKGILSFSPV 182 (212)
T ss_dssp CCBEE--E--------GGGHHHHC-C----CSCCEEEECSCGG------GHHHHHHHHHHHTCCEEEECSSS
T ss_pred CeEEe--C--------HHHHHHHHHH----cCCCEEEEecCch------hHHHHHHHHHHcCCCEEEEcCCc
Confidence 54433 2 3456777764 3677888877653 35789999999999999999844
No 243
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=24.89 E-value=4.1e+02 Score=24.39 Aligned_cols=64 Identities=16% Similarity=0.082 Sum_probs=45.6
Q ss_pred HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEE--ecccCccccccCHHHHHHHHHHcC----CEEEEecc
Q 043646 198 WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSF--SACSNVTGIYSDTRSIARLLHQYG----GFACFDFA 271 (625)
Q Consensus 198 ~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~--~~~~n~TG~~~~l~~I~~la~~~g----~~vivD~A 271 (625)
++..|.+|+.+..+ +.++++.+++.+ .++.+|.+ +.. .|.....++++.+.+++.| +.+++=++
T Consensus 116 l~~~G~~Vi~LG~~----vp~e~iv~~~~~----~~~d~v~l~~S~l--~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG~ 185 (215)
T 3ezx_A 116 LGANGFQIVDLGVD----VLNENVVEEAAK----HKGEKVLLVGSAL--MTTSMLGQKDLMDRLNEEKLRDSVKCMFGGA 185 (215)
T ss_dssp HHHTSCEEEECCSS----CCHHHHHHHHHH----TTTSCEEEEEECS--SHHHHTHHHHHHHHHHHTTCGGGSEEEEESS
T ss_pred HHHCCCeEEEcCCC----CCHHHHHHHHHH----cCCCEEEEEchhc--ccCcHHHHHHHHHHHHHcCCCCCCEEEEECC
Confidence 45679999887654 578888777775 57888888 654 3445566888888888864 56777665
No 244
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=24.50 E-value=4.3e+02 Score=27.24 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=34.3
Q ss_pred cEEEeCChHHH-HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEec
Q 043646 141 AIIFCGAGTTA-AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGL 210 (625)
Q Consensus 141 ~vift~sGtta-al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~ 210 (625)
.|+..++|.++ ++...+..+|+ +.+|+++...-......++..|++|+.++-
T Consensus 162 ~vv~aSsGNhg~avA~~aa~~G~------------------~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~~ 214 (442)
T 3ss7_X 162 SIAVGSTGNLGLSIGIMSARIGF------------------KVTVHMSADARAWKKAKLRSHGVTVVEYEQ 214 (442)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTC------------------EEEEEEETTSCHHHHHHHHHTTCEEEEESS
T ss_pred EEEEECCCHHHHHHHHHHHHhCC------------------cEEEEECCCCCHHHHHHHHHCCCEEEEECC
Confidence 45555556555 66666666653 235777776555556667889999988874
No 245
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=23.72 E-value=3.9e+02 Score=27.72 Aligned_cols=30 Identities=13% Similarity=0.037 Sum_probs=22.5
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 496 TRITFPYYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 496 iRis~~~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
-||+-|.-++.+||.++++..+....-..+
T Consensus 399 ~ria~gsg~~~~~v~~ll~~~~~~~~~~~~ 428 (443)
T 3dm5_A 399 KRIARGSGTSTKDVKELLDQYRQMKKLFKS 428 (443)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 588887778999999998887766544433
No 246
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=23.69 E-value=43 Score=34.90 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=28.6
Q ss_pred EecccCccccccCHHHHHHHHHHcCCEEEEecc
Q 043646 239 FSACSNVTGIYSDTRSIARLLHQYGGFACFDFA 271 (625)
Q Consensus 239 ~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A 271 (625)
+..++...|...+++++++.||++|+-|++|.+
T Consensus 59 y~~idp~~Gt~~df~~lv~~aH~~Gi~VilD~V 91 (441)
T 1lwj_A 59 FYSFKAEYGSEREFKEMIEAFHDSGIKVVLDLP 91 (441)
T ss_dssp EEEECTTTCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred ccccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 334556679999999999999999999999988
No 247
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=23.69 E-value=38 Score=35.47 Aligned_cols=31 Identities=10% Similarity=-0.084 Sum_probs=27.7
Q ss_pred cccCccccccCHHHHHHHHHHcCCEEEEecc
Q 043646 241 ACSNVTGIYSDTRSIARLLHQYGGFACFDFA 271 (625)
Q Consensus 241 ~~~n~TG~~~~l~~I~~la~~~g~~vivD~A 271 (625)
.+....|...+++++++.||++|+-|++|.+
T Consensus 56 ~idp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V 86 (448)
T 1g94_A 56 ELQSRGGNRAQFIDMVNRCSAAGVDIYVDTL 86 (448)
T ss_dssp CSCBTTBCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCCCCHHHHHHHHHHHHHCCCEEEEEEe
Confidence 3555679999999999999999999999987
No 248
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=23.37 E-value=1.2e+02 Score=25.86 Aligned_cols=65 Identities=12% Similarity=-0.037 Sum_probs=43.9
Q ss_pred HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcC---CEEEEeccC
Q 043646 198 WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYG---GFACFDFAA 272 (625)
Q Consensus 198 ~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g---~~vivD~A~ 272 (625)
++..|.+|+.+..+ +.++++.+++.+ .++.+|.+|.... .....++++.+.+++.| +.+++=++.
T Consensus 27 l~~~G~~Vi~lG~~----~p~e~~v~~a~~----~~~d~v~lS~~~~--~~~~~~~~~i~~l~~~g~~~i~v~vGG~~ 94 (137)
T 1ccw_A 27 FTNAGFNVVNIGVL----SPQELFIKAAIE----TKADAILVSSLYG--QGEIDCKGLRQKCDEAGLEGILLYVGGNI 94 (137)
T ss_dssp HHHTTCEEEEEEEE----ECHHHHHHHHHH----HTCSEEEEEECSS--THHHHHTTHHHHHHHTTCTTCEEEEEESC
T ss_pred HHHCCCEEEECCCC----CCHHHHHHHHHh----cCCCEEEEEecCc--CcHHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 45679999988653 568888877775 3788888876553 23334667777777753 667776654
No 249
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=23.29 E-value=54 Score=30.08 Aligned_cols=50 Identities=8% Similarity=0.018 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcC--CEEEEeccCcCCC
Q 043646 217 DIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYG--GFACFDFAASGPY 276 (625)
Q Consensus 217 d~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g--~~vivD~A~~~g~ 276 (625)
+.++|++++. .....+++-. |.+..++++.+.+|++| +++++|-..+.+.
T Consensus 18 ~~~~l~~al~-----s~~~~ifll~-----g~i~~l~~~v~~lk~~~K~v~Vh~Dli~Gls~ 69 (192)
T 3kts_A 18 NQKDMEKILE-----LDLTYMVMLE-----THVAQLKALVKYAQAGGKKVLLHADLVNGLKN 69 (192)
T ss_dssp SSHHHHHHTT-----SSCCEEEECS-----EETTTHHHHHHHHHHTTCEEEEEGGGEETCCC
T ss_pred CHHHHHHHHc-----CCCCEEEEec-----CcHHHHHHHHHHHHHcCCeEEEecCchhccCC
Confidence 6788999887 3455555533 67889999999999997 4667777766544
No 250
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=23.15 E-value=57 Score=20.05 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=18.0
Q ss_pred hhhhHHhHHHHHHHHHhhCCCC
Q 043646 585 KINKYASYLDNAKTIAGLLPEF 606 (625)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~ 606 (625)
..+.|++-|+.||+||.+.-..
T Consensus 6 ~~daFadA~~RaRQIaAKig~~ 27 (31)
T 2kxh_B 6 VNDAFKDALQRARQIAAKIGGD 27 (31)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHHHHHHhcCC
Confidence 3478999999999999987643
No 251
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=22.38 E-value=45 Score=35.20 Aligned_cols=30 Identities=17% Similarity=0.044 Sum_probs=27.0
Q ss_pred ccCccccccCHHHHHHHHHHcCCEEEEecc
Q 043646 242 CSNVTGIYSDTRSIARLLHQYGGFACFDFA 271 (625)
Q Consensus 242 ~~n~TG~~~~l~~I~~la~~~g~~vivD~A 271 (625)
+....|...+++++++.||++|+-||+|.+
T Consensus 71 id~~~Gt~~df~~lv~~aH~~Gi~VilD~V 100 (483)
T 3bh4_A 71 VRTKYGTKSELQDAIGSLHSRNVQVYGDVV 100 (483)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEc
Confidence 455679999999999999999999999987
No 252
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=21.49 E-value=49 Score=34.97 Aligned_cols=30 Identities=17% Similarity=0.058 Sum_probs=27.0
Q ss_pred ccCccccccCHHHHHHHHHHcCCEEEEecc
Q 043646 242 CSNVTGIYSDTRSIARLLHQYGGFACFDFA 271 (625)
Q Consensus 242 ~~n~TG~~~~l~~I~~la~~~g~~vivD~A 271 (625)
+....|...+++++++.||++|+-||+|.+
T Consensus 75 idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V 104 (485)
T 1wpc_A 75 VRTKYGTRSQLQAAVTSLKNNGIQVYGDVV 104 (485)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEe
Confidence 455678899999999999999999999987
No 253
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=21.40 E-value=50 Score=35.31 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=29.3
Q ss_pred EEecccCccccccCHHHHHHHHHHcCCEEEEecc
Q 043646 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFA 271 (625)
Q Consensus 238 ~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A 271 (625)
-+..+...-|...+++++++.||++|+-||+|.+
T Consensus 68 dy~~vdp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V 101 (549)
T 4aie_A 68 DYEAIDPQYGTMADMDELISKAKEHHIKIVMDLV 101 (549)
T ss_dssp EEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3445566679999999999999999999999987
No 254
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=21.34 E-value=49 Score=34.88 Aligned_cols=30 Identities=10% Similarity=-0.086 Sum_probs=26.9
Q ss_pred ccCccccccCHHHHHHHHHHcCCEEEEecc
Q 043646 242 CSNVTGIYSDTRSIARLLHQYGGFACFDFA 271 (625)
Q Consensus 242 ~~n~TG~~~~l~~I~~la~~~g~~vivD~A 271 (625)
+....|...+++++++.||++|+-||+|.+
T Consensus 73 idp~~Gt~~df~~lv~~aH~~Gi~VilD~V 102 (480)
T 1ud2_A 73 VRTKYGTKAQLERAIGSLKSNDINVYGDVV 102 (480)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEc
Confidence 445578899999999999999999999987
No 255
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=21.17 E-value=50 Score=35.29 Aligned_cols=30 Identities=13% Similarity=0.030 Sum_probs=26.8
Q ss_pred ccCccccccCHHHHHHHHHHcCCEEEEecc
Q 043646 242 CSNVTGIYSDTRSIARLLHQYGGFACFDFA 271 (625)
Q Consensus 242 ~~n~TG~~~~l~~I~~la~~~g~~vivD~A 271 (625)
+....|...+++++++.||++|+-||+|.+
T Consensus 74 idp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V 103 (515)
T 1hvx_A 74 VRTKYGTKAQYLQAIQAAHAAGMQVYADVV 103 (515)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCEEEEEEe
Confidence 445568899999999999999999999987
No 256
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=21.13 E-value=6.1e+02 Score=25.13 Aligned_cols=83 Identities=10% Similarity=0.059 Sum_probs=42.9
Q ss_pred CCceEEEEcCCCCchhHHHHHHcCCe---EEEEecCCCCCCCHHHH-HHHHHHh--hhCCCCeEEEEecccCccc-----
Q 043646 179 EERWVVFLGPYEHHSNLLSWRQSLAE---VVEIGLDDNGLLDIEAL-RSQLELY--KAAKRPMLGSFSACSNVTG----- 247 (625)
Q Consensus 179 gd~~~Vlv~~~~h~s~~~~~~~~G~~---vv~v~~~~~~~ld~~~L-~~~l~~~--~~~~~~~lv~~~~~~n~TG----- 247 (625)
|.+ ++++ +.+|.....-++..|.. +.....+ +.+++ ...+..- ....++.+|++.+..+..-
T Consensus 58 g~~-vlyI-d~E~s~~~~ra~~lGvd~d~llv~~~~-----~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eie 130 (333)
T 3io5_A 58 DAV-CLFY-DSEFGITPAYLRSMGVDPERVIHTPVQ-----SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETE 130 (333)
T ss_dssp TCE-EEEE-ESSCCCCHHHHHHTTCCGGGEEEEECS-----BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC----
T ss_pred Cce-EEEE-eccchhhHHHHHHhCCCHHHeEEEcCC-----CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhcc
Confidence 443 4444 44554433346666763 3333322 44444 2222110 1125789999999988742
Q ss_pred -cc--------cC-------HHHHHHHHHHcCCEEEE
Q 043646 248 -IY--------SD-------TRSIARLLHQYGGFACF 268 (625)
Q Consensus 248 -~~--------~~-------l~~I~~la~~~g~~viv 268 (625)
.. .- +..|..+++++|+.+++
T Consensus 131 g~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~ 167 (333)
T 3io5_A 131 DALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIA 167 (333)
T ss_dssp ----------CTHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 11 11 33456678889987654
No 257
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=21.00 E-value=51 Score=34.32 Aligned_cols=30 Identities=17% Similarity=0.153 Sum_probs=26.8
Q ss_pred ccCccccccCHHHHHHHHHHcCCEEEEecc
Q 043646 242 CSNVTGIYSDTRSIARLLHQYGGFACFDFA 271 (625)
Q Consensus 242 ~~n~TG~~~~l~~I~~la~~~g~~vivD~A 271 (625)
++...|...+++++++.||++|+-|++|.+
T Consensus 79 id~~~Gt~~df~~lv~~~H~~Gi~VilD~V 108 (435)
T 1mxg_A 79 VETRFGSKEELVRLIQTAHAYGIKVIADVV 108 (435)
T ss_dssp SSCSSCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 445568899999999999999999999987
No 258
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=20.83 E-value=5.1e+02 Score=25.08 Aligned_cols=54 Identities=13% Similarity=0.055 Sum_probs=33.7
Q ss_pred HcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecc-cCccccccCHHHHHHHHHHcC-CEE
Q 043646 200 QSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSAC-SNVTGIYSDTRSIARLLHQYG-GFA 266 (625)
Q Consensus 200 ~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~-~n~TG~~~~l~~I~~la~~~g-~~v 266 (625)
..+++++..++. |.+.+.+++.+ .++.+|+.++. .|.. ....|.+.|++.| +-.
T Consensus 59 ~~~v~~~~~Dl~-----d~~~l~~~~~~----~~~d~Vi~~a~~~n~~----~~~~l~~aa~~~g~v~~ 114 (346)
T 3i6i_A 59 DKGAIIVYGLIN-----EQEAMEKILKE----HEIDIVVSTVGGESIL----DQIALVKAMKAVGTIKR 114 (346)
T ss_dssp HTTCEEEECCTT-----CHHHHHHHHHH----TTCCEEEECCCGGGGG----GHHHHHHHHHHHCCCSE
T ss_pred hCCcEEEEeecC-----CHHHHHHHHhh----CCCCEEEECCchhhHH----HHHHHHHHHHHcCCceE
Confidence 356666555543 78999999874 24555544443 2333 3578889999887 533
No 259
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=20.55 E-value=54 Score=34.51 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=30.1
Q ss_pred EEEEecccCccccccCHHHHHHHHHHcCCEEEEecc
Q 043646 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFA 271 (625)
Q Consensus 236 lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A 271 (625)
..-+-.++...|...+++++++.||++|+-|++|.+
T Consensus 84 ~~d~~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V 119 (478)
T 2guy_A 84 QQDIYSLNENYGTADDLKALSSALHERGMYLMVDVV 119 (478)
T ss_dssp EEEEEEECTTSCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cccccccCccCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 334445566779999999999999999999999987
No 260
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=20.51 E-value=4.3e+02 Score=26.40 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=31.9
Q ss_pred cEEEeCChHHH-HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEec
Q 043646 141 AIIFCGAGTTA-AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGL 210 (625)
Q Consensus 141 ~vift~sGtta-al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~ 210 (625)
.|+-.++|.++ ++..++..+|+ +.+|+++...-......++..|++|+.++-
T Consensus 95 ~vv~aSsGN~g~alA~aa~~~G~------------------~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~ 147 (364)
T 4h27_A 95 HFVCSSSGNAGMAAAYAARQLGV------------------PATIVVPGTTPALTIERLKNEGATVKVVGE 147 (364)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTC------------------CEEEEEETTSCHHHHHHHHTTTCEEEEECS
T ss_pred EEEEeCCChHHHHHHHHHHHhCC------------------ceEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 45554455554 66666555542 235777765544455567778999988863
Done!