BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043647
(1096 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 534 YEIRLLTR-YITDVVLSNL---LPKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSET 589
++ LTR Y+ L+ L + + LRVL L +T LP +G L+Y +
Sbjct: 244 FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN 303
Query: 590 MIRCLPESICSLCNLQFLILRG 611
M+ LP +LCNLQFL + G
Sbjct: 304 MVTTLPWEFGNLCNLQFLGVEG 325
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 554 KFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCY 613
+ + L+ ++ + ELP + L + L+ +R LP SI SL L+ L +R C
Sbjct: 102 RLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACP 161
Query: 614 RLKKLPSNL---------RNLINLRHLVVTYVDLIREMPLGIKELKCLQML 655
L +LP L + L+NL+ L + + IR +P I L+ L+ L
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSL 211
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 47/173 (27%), Positives = 72/173 (41%), Gaps = 28/173 (16%)
Query: 929 LKSLPEGLPNLNSLHNIYVWDCPSLVSFPE-----------GGLPNC-----------SL 966
L++LP + +LN L + + CP L PE GL N SL
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198
Query: 967 SVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSL 1026
+I + LK+L N+ S + +H L L+ L + GC ++P G + L
Sbjct: 199 PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR---APL 255
Query: 1027 TELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFPE--AGLPSSLLEL 1077
L++ L L + R L LE L +R C L+ P A LP++ + L
Sbjct: 256 KRLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 555 FTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYR 614
L+ L L+ I LP SI +L++L+ + + + + L +I L L+ L LRGC
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA 241
Query: 615 LKKLPSNLRNLINLRHLVVTYVDLIREMPLGIKELKCLQMLSNFIVGMVTGSR 667
L+ P L+ L++ + +PL I L L+ L + G V SR
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD--LRGCVNLSR 292
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 80/350 (22%), Positives = 136/350 (38%), Gaps = 75/350 (21%)
Query: 174 LPTEPAVFGRDEDKAKILEMVL---RDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAV 230
+P P VF + ++ L + EP + I GMAG GK+ LA A D ++
Sbjct: 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEP-----GWVTIHGMAGCGKSVLAAEAVRDHSL 173
Query: 231 EMFNLRS---WVCVSDD------FDILRITKSILESITFSPNSLKDLNQIQVQLREAVAG 281
WV V + + + + +FS ++ + + +LR +
Sbjct: 174 LEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR 233
Query: 282 K--RFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTDVALTVGTAEYY----- 334
K R L++LDDVW W +A S +IL+TT V +V +Y
Sbjct: 234 KHPRSLLILDDVWDS----W-----VLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVES 284
Query: 335 NLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGGLLRCKQS 394
+L + S+FV +K D+ H ++++C+G PL +G LLR
Sbjct: 285 SLGKEKGLEILSLFVN--MKKADLPEQAH------SIIKECKGSPLVVSLIGALLR--DF 334
Query: 395 DDEWD----EILNSKIWYLSEESN-----ILPVLRLSYHHLPSHLKRCFAYCAIFPK--- 442
+ W+ ++ N + + + S+ + + +S L +K + +I K
Sbjct: 335 PNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVK 394
Query: 443 ----------DYEFEEMESIFQPSSN----------NSFKFIMHDLVNDL 472
D E EE+E I Q N SF++ +HDL D
Sbjct: 395 VPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDF 444
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 80/350 (22%), Positives = 136/350 (38%), Gaps = 75/350 (21%)
Query: 174 LPTEPAVFGRDEDKAKILEMVL---RDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAV 230
+P P VF + ++ L + EP + I GMAG GK+ LA A D ++
Sbjct: 125 VPQRPVVFVTRKKLVNAIQQKLSKLKGEP-----GWVTIHGMAGCGKSVLAAEAVRDHSL 179
Query: 231 EMFNLRS---WVCVSDD------FDILRITKSILESITFSPNSLKDLNQIQVQLREAVAG 281
WV V + + + + +FS ++ + + +LR +
Sbjct: 180 LEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR 239
Query: 282 K--RFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTDVALTVGTAEYY----- 334
K R L++LDDVW W +A S +IL+TT V +V +Y
Sbjct: 240 KHPRSLLILDDVWDS----W-----VLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVES 290
Query: 335 NLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGGLLRCKQS 394
+L + S+FV +K D+ H ++++C+G PL +G LLR
Sbjct: 291 SLGKEKGLEILSLFVN--MKKADLPEQAH------SIIKECKGSPLVVSLIGALLR--DF 340
Query: 395 DDEWD----EILNSKIWYLSEESN-----ILPVLRLSYHHLPSHLKRCFAYCAIFPK--- 442
+ W+ ++ N + + + S+ + + +S L +K + +I K
Sbjct: 341 PNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVK 400
Query: 443 ----------DYEFEEMESIFQPSSN----------NSFKFIMHDLVNDL 472
D E EE+E I Q N SF++ +HDL D
Sbjct: 401 VPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDF 450
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 36.6 bits (83), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 119/327 (36%), Gaps = 93/327 (28%)
Query: 207 IPIVGMAGVGKTTLARVAFDDKAVEMFNLRS---WVCVSDD------FDILRITKSILES 257
+ I GMAG GK+ LA A D ++ WV + + + + +
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 216
Query: 258 ITFSPNSLKDLNQIQVQLREAVAGK--RFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKI 315
+FS ++ + + +LR + K R L++LDDVW W +A + +I
Sbjct: 217 ESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP----W-----VLKAFDNQCQI 267
Query: 316 LVTTCSTDVALTV-----------GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHM 364
L+TT V +V G L++LS +FV +K D+ H
Sbjct: 268 LLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILS------LFVN--MKKEDLPAEAH- 318
Query: 365 GSIRKKVVQKCRGLPLAAETLGGLLRCKQSDDEWDEILNSKIWYLSEESN---------- 414
++++C+G PL +G LLR + N +YL + N
Sbjct: 319 -----SIIKECKGSPLVVSLIGALLR---------DFPNRWAYYLRQLQNKQFKRIRKSS 364
Query: 415 ------ILPVLRLSYHHLPSHLKRCFAYCAIFPKDY-------------EFEEMESIFQP 455
+ + +S L +K + +I KD E EE+E I Q
Sbjct: 365 SYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQE 424
Query: 456 SSN----------NSFKFIMHDLVNDL 472
N SF + +HDL D
Sbjct: 425 FVNKSLLFCNRNGKSFCYYLHDLQVDF 451
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 119/327 (36%), Gaps = 93/327 (28%)
Query: 207 IPIVGMAGVGKTTLARVAFDDKAVEMFNLRS---WVCVSDD------FDILRITKSILES 257
+ I GMAG GK+ LA A D ++ WV + + + + +
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 209
Query: 258 ITFSPNSLKDLNQIQVQLREAVAGK--RFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKI 315
+FS ++ + + +LR + K R L++LDDVW W +A + +I
Sbjct: 210 ESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP----W-----VLKAFDNQCQI 260
Query: 316 LVTTCSTDVALTV-----------GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHM 364
L+TT V +V G L++LS +FV +K D+ H
Sbjct: 261 LLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILS------LFVN--MKKEDLPAEAH- 311
Query: 365 GSIRKKVVQKCRGLPLAAETLGGLLRCKQSDDEWDEILNSKIWYLSEESN---------- 414
++++C+G PL +G LLR + N +YL + N
Sbjct: 312 -----SIIKECKGSPLVVSLIGALLR---------DFPNRWAYYLRQLQNKQFKRIRKSS 357
Query: 415 ------ILPVLRLSYHHLPSHLKRCFAYCAIFPKDY-------------EFEEMESIFQP 455
+ + +S L +K + +I KD E EE+E I Q
Sbjct: 358 SYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQE 417
Query: 456 SSN----------NSFKFIMHDLVNDL 472
N SF + +HDL D
Sbjct: 418 FVNKSLLFCNRNGKSFCYYLHDLQVDF 444
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 35.4 bits (80), Expect = 0.18, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 27 FARREGVISKLEKWKKTLLMIQAVFSDAEE--KQLTDKAVKMWLDDLQDLAYDVEDILDE 84
F +GV +E K L A E ++ D K+W D++++L+Y +ED++D+
Sbjct: 18 FKLHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDK 77
Query: 85 FATEALARKLKVEHHQSSSSNSKVQNL 111
F ++V+ +S +N+K + L
Sbjct: 78 FL-------VQVDGIKSDDNNNKFKGL 97
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 565 KYYITELPHSIGDLKHLRYINLSETMIRC-LPESICSLCNLQFLILRGCYRLKKLPSNLR 623
Y +P S+G L LR + L M+ +P+ + + L+ LIL ++PS L
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487
Query: 624 NLINLRHLVVTYVDLIREMPLGIKELKCLQML 655
N NL + ++ L E+P I L+ L +L
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 565 KYYITELPHSIGDLKHLRYINLSETMIRC-LPESICSLCNLQFLILRGCYRLKKLPSNLR 623
Y +P S+G L LR + L M+ +P+ + + L+ LIL ++PS L
Sbjct: 425 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 484
Query: 624 NLINLRHLVVTYVDLIREMPLGIKELKCLQML 655
N NL + ++ L E+P I L+ L +L
Sbjct: 485 NCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 516
>pdb|3UTE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTG|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTH|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate Udp-Galp
In Reduced State
pdb|3UTH|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate Udp-Galp
In Reduced State
pdb|3UTH|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate Udp-Galp
In Reduced State
pdb|3UTH|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate Udp-Galp
In Reduced State
pdb|4GDC|A Chain A, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|B Chain B, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|C Chain C, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|D Chain D, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDD|A Chain A, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|B Chain B, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|C Chain C, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|D Chain D, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDE|A Chain A, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|B Chain B, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|C Chain C, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|D Chain D, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
Length = 513
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 679 GELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKELTVKCYGGTVFPSWMGDPLFSNIVL 738
G + S YFDD +EAL K D H+ + V+C G W+ P +NI +
Sbjct: 65 GHVIFSHYKYFDDCLDEALPKE--DDWYTHQRIS--YVRCQG-----QWVPYPFQNNISM 115
Query: 739 LRLEDCEKC 747
L E+ KC
Sbjct: 116 LPKEEQVKC 124
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 8/131 (6%)
Query: 519 FHEVEHLRTFLPVLSYEIRLLTRYITDVVLSNLLPKFTKLRVLSLKKYYITELPHSIGD- 577
H++ L+ L L+Y I LT + + + K T L+ L L + + LP + D
Sbjct: 75 LHDISALKE-LTNLTYLI--LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK 131
Query: 578 LKHLRYINLSETMIRCLPESIC-SLCNLQFLILRGCYRLKKLPSNLRN-LINLRHLVVTY 635
L +L Y+NL+ ++ LP+ + L NL L L +L+ LP + + L L+ L + Y
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL-SYNQLQSLPEGVFDKLTQLKDLRL-Y 189
Query: 636 VDLIREMPLGI 646
+ ++ +P G+
Sbjct: 190 QNQLKSVPDGV 200
>pdb|3UKP|A Chain A, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|B Chain B, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|C Chain C, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|D Chain D, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|E Chain E, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|F Chain F, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|G Chain G, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|H Chain H, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
Length = 509
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 679 GELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKELTVKCYGGTVFPSWMGDPLFSNIVL 738
G + S YFDD +EAL K D H+ + V+C G W+ P +NI +
Sbjct: 61 GHVIFSHYKYFDDCLDEALPKE--DDWYTHQRIS--YVRCQG-----QWVPYPFQNNISM 111
Query: 739 LRLEDCEKC 747
L E+ KC
Sbjct: 112 LPKEEQVKC 120
>pdb|3UKQ|A Chain A, Crystal Structure Of R327k Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|B Chain B, Crystal Structure Of R327k Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|C Chain C, Crystal Structure Of R327k Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|D Chain D, Crystal Structure Of R327k Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
Length = 510
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 679 GELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKELTVKCYGGTVFPSWMGDPLFSNIVL 738
G + S YFDD +EAL K D H+ + V+C G W+ P +NI +
Sbjct: 61 GHVIFSHYKYFDDCLDEALPKE--DDWYTHQRIS--YVRCQG-----QWVPYPFQNNISM 111
Query: 739 LRLEDCEKC 747
L E+ KC
Sbjct: 112 LPKEEQVKC 120
>pdb|3UKK|A Chain A, Crystal Structure Of R182k-Udp-Galactopuranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|B Chain B, Crystal Structure Of R182k-Udp-Galactopuranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|C Chain C, Crystal Structure Of R182k-Udp-Galactopuranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|D Chain D, Crystal Structure Of R182k-Udp-Galactopuranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
Length = 517
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 679 GELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKELTVKCYGGTVFPSWMGDPLFSNIVL 738
G + S YFDD +EAL K D H+ + V+C G W+ P +NI +
Sbjct: 61 GHVIFSHYKYFDDCLDEALPKE--DDWYTHQRIS--YVRCQG-----QWVPYPFQNNISM 111
Query: 739 LRLEDCEKC 747
L E+ KC
Sbjct: 112 LPKEEQVKC 120
>pdb|3UKL|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
Length = 510
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 679 GELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKELTVKCYGGTVFPSWMGDPLFSNIVL 738
G + S YFDD +EAL K D H+ + V+C G W+ P +NI +
Sbjct: 61 GHVIFSHYKYFDDCLDEALPKE--DDWYTHQRIS--YVRCQG-----QWVPYPFQNNISM 111
Query: 739 LRLEDCEKC 747
L E+ KC
Sbjct: 112 LPKEEQVKC 120
>pdb|3UKH|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
Length = 519
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 679 GELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKELTVKCYGGTVFPSWMGDPLFSNIVL 738
G + S YFDD +EAL K D H+ + V+C G W+ P +NI +
Sbjct: 61 GHVIFSHYKYFDDCLDEALPKE--DDWYTHQRIS--YVRCQG-----QWVPYPFQNNISM 111
Query: 739 LRLEDCEKC 747
L E+ KC
Sbjct: 112 LPKEEQVKC 120
>pdb|3UKA|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKA|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKA|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKA|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKF|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
Length = 509
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 679 GELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKELTVKCYGGTVFPSWMGDPLFSNIVL 738
G + S YFDD +EAL K D H+ + V+C G W+ P +NI
Sbjct: 61 GHVIFSHYKYFDDCLDEALPKE--DDWYTHQRIS--YVRCQG-----QWVPYPFQNNISX 111
Query: 739 LRLEDCEKC 747
L E+ KC
Sbjct: 112 LPKEEQVKC 120
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 30.4 bits (67), Expect = 5.2, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 10/67 (14%)
Query: 196 RDEPTDANFSLIP-----IVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250
R+ D +F+++P +VG +G GK+T+ R+ F +++ S D DI ++
Sbjct: 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF-----RFYDISSGCIRIDGQDISQV 121
Query: 251 TKSILES 257
T++ L S
Sbjct: 122 TQASLRS 128
>pdb|2ZVF|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|C Chain C, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|D Chain D, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|E Chain E, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|F Chain F, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|G Chain G, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|H Chain H, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
Length = 171
Score = 30.4 bits (67), Expect = 6.2, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 865 EIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCI 921
EI+R K V AD++ ++ F + + ++ D L+ +AER ++GC+
Sbjct: 47 EIERLKSVIADLWADILXERAEEFDSXKVVAEVVDADXQALQKLAERLAEKGAVGCL 103
>pdb|2DQA|A Chain A, Crystal Structure Of Tapes Japonica Lysozyme
pdb|2DQA|B Chain B, Crystal Structure Of Tapes Japonica Lysozyme
Length = 124
Score = 30.0 bits (66), Expect = 6.8, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 852 VVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPK 904
+VS L +CKLE CK + CR M + S S YF+ ++Q +DC K
Sbjct: 6 MVSQKCLLCMCKLESGGCKPIGCR-----MDVGSLSCGYFQ-IKQPYWIDCGK 52
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 14/169 (8%)
Query: 7 FLSAFLQMLFDRLMSREVLNFARR---EGVISKLEKWKKTLLMIQAVFSDAEEKQLTDKA 63
FL L++L + REV NF R+ S+LE +K + + D++ + T+
Sbjct: 206 FLIPILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQKHRVDFLQLMIDSQNSKETES- 264
Query: 64 VKMWLDDLQDLAYDVEDILDEFATEA---------LARKLKVEHHQSSSSNSKVQNLIIP 114
L DL+ +A + I + T + LA V+ ++ + N P
Sbjct: 265 -HKALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPP 323
Query: 115 ACFTSLSPSSVKFNVGMGSKIRSISSRFEEICKQKVELGLQMNAGGVSI 163
T L + V ++ I+ R E +CK+ VE+ GV +
Sbjct: 324 TYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVV 372
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 14/169 (8%)
Query: 7 FLSAFLQMLFDRLMSREVLNFARR---EGVISKLEKWKKTLLMIQAVFSDAEEKQLTDKA 63
FL L++L + REV NF R+ S+LE +K + + D++ + T+
Sbjct: 208 FLIPILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQKHRVDFLQLMIDSQNSKETES- 266
Query: 64 VKMWLDDLQDLAYDVEDILDEFATEA---------LARKLKVEHHQSSSSNSKVQNLIIP 114
L DL+ +A + I + T + LA V+ ++ + N P
Sbjct: 267 -HKALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPP 325
Query: 115 ACFTSLSPSSVKFNVGMGSKIRSISSRFEEICKQKVELGLQMNAGGVSI 163
T L + V ++ I+ R E +CK+ VE+ GV +
Sbjct: 326 TYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVV 374
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 14/169 (8%)
Query: 7 FLSAFLQMLFDRLMSREVLNFARR---EGVISKLEKWKKTLLMIQAVFSDAEEKQLTDKA 63
FL L++L + REV NF R+ S+LE +K + + D++ + T+
Sbjct: 207 FLIPILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQKHRVDFLQLMIDSQNSKETES- 265
Query: 64 VKMWLDDLQDLAYDVEDILDEFATEA---------LARKLKVEHHQSSSSNSKVQNLIIP 114
L DL+ +A + I + T + LA V+ ++ + N P
Sbjct: 266 -HKALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPP 324
Query: 115 ACFTSLSPSSVKFNVGMGSKIRSISSRFEEICKQKVELGLQMNAGGVSI 163
T L + V ++ I+ R E +CK+ VE+ GV +
Sbjct: 325 TYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVV 373
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 1025 SLTELVIVRFPKLKYLSSNGFRNLAFLEYL-----QIRDCPKLTSFPEAGLPSSLLELYI 1079
SL L + KL+Y+S F L L+YL I+D P LT P GL LE+
Sbjct: 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLT--PLVGLEE--LEMSG 227
Query: 1080 NDYP 1083
N +P
Sbjct: 228 NHFP 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,761,214
Number of Sequences: 62578
Number of extensions: 1296277
Number of successful extensions: 3082
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 3051
Number of HSP's gapped (non-prelim): 50
length of query: 1096
length of database: 14,973,337
effective HSP length: 109
effective length of query: 987
effective length of database: 8,152,335
effective search space: 8046354645
effective search space used: 8046354645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)