Query 043647
Match_columns 1096
No_of_seqs 671 out of 4652
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 06:59:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043647.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043647hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.3E-77 7.1E-82 714.3 48.4 601 26-660 19-675 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.8E-64 6.1E-69 641.1 52.2 674 176-1041 182-910 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.3E-38 2.9E-43 348.7 17.4 259 183-447 1-268 (287)
4 PLN00113 leucine-rich repeat r 100.0 1.9E-33 4.2E-38 360.9 25.0 509 518-1085 88-607 (968)
5 PLN00113 leucine-rich repeat r 100.0 2.5E-32 5.4E-37 350.7 23.3 483 519-1062 114-607 (968)
6 PLN03210 Resistant to P. syrin 99.9 1.2E-23 2.6E-28 269.2 23.6 364 572-1087 551-945 (1153)
7 KOG4194 Membrane glycoprotein 99.9 6.1E-25 1.3E-29 234.9 5.4 385 558-1080 54-447 (873)
8 KOG0472 Leucine-rich repeat pr 99.9 3E-26 6.4E-31 234.5 -15.0 460 550-1083 62-539 (565)
9 KOG0444 Cytoskeletal regulator 99.9 9.4E-25 2E-29 234.5 -7.9 174 555-767 6-183 (1255)
10 KOG0618 Serine/threonine phosp 99.9 7.4E-24 1.6E-28 239.5 -4.1 103 552-656 41-143 (1081)
11 KOG0444 Cytoskeletal regulator 99.9 4.5E-24 9.7E-29 229.3 -8.3 365 576-1066 4-379 (1255)
12 KOG0472 Leucine-rich repeat pr 99.8 1.9E-24 4.2E-29 221.3 -12.7 202 548-768 106-308 (565)
13 KOG4194 Membrane glycoprotein 99.8 3.3E-22 7.1E-27 214.2 0.4 170 559-767 81-255 (873)
14 KOG0618 Serine/threonine phosp 99.8 5.2E-22 1.1E-26 224.7 -9.2 93 549-642 61-153 (1081)
15 PRK15387 E3 ubiquitin-protein 99.5 5.7E-14 1.2E-18 166.3 15.5 79 556-644 201-279 (788)
16 PRK15387 E3 ubiquitin-protein 99.5 6.5E-14 1.4E-18 165.8 15.5 255 709-1059 201-455 (788)
17 KOG4237 Extracellular matrix p 99.4 5.9E-15 1.3E-19 152.3 -5.7 110 545-656 80-194 (498)
18 PRK15370 E3 ubiquitin-protein 99.4 1.4E-12 2.9E-17 156.1 10.7 82 556-645 178-259 (754)
19 KOG4237 Extracellular matrix p 99.3 4.8E-14 1E-18 145.7 -4.0 98 558-656 69-170 (498)
20 KOG4658 Apoptotic ATPase [Sign 99.3 8.2E-13 1.8E-17 160.4 5.1 106 554-660 543-652 (889)
21 PRK15370 E3 ubiquitin-protein 99.3 1.1E-11 2.3E-16 148.5 11.3 160 893-1084 263-427 (754)
22 PRK04841 transcriptional regul 99.3 2.5E-10 5.4E-15 146.7 24.3 274 177-477 13-332 (903)
23 KOG0617 Ras suppressor protein 99.2 2.8E-13 6E-18 123.5 -5.8 103 552-655 52-155 (264)
24 PRK00411 cdc6 cell division co 99.2 1.8E-09 4E-14 123.8 22.8 252 176-438 28-306 (394)
25 KOG0617 Ras suppressor protein 99.2 6.6E-13 1.4E-17 121.1 -5.2 102 553-655 30-132 (264)
26 TIGR03015 pepcterm_ATPase puta 99.1 6.3E-09 1.4E-13 112.6 23.1 182 204-389 43-242 (269)
27 TIGR02928 orc1/cdc6 family rep 99.0 3E-08 6.4E-13 112.6 24.6 252 177-438 14-298 (365)
28 KOG4341 F-box protein containi 99.0 1.7E-12 3.7E-17 135.7 -9.2 284 735-1064 139-441 (483)
29 PF01637 Arch_ATPase: Archaeal 99.0 1.4E-09 3.1E-14 115.2 11.5 194 180-384 1-233 (234)
30 PRK15386 type III secretion pr 99.0 3E-09 6.4E-14 115.6 10.9 160 891-1087 51-215 (426)
31 PF05729 NACHT: NACHT domain 98.9 6.6E-09 1.4E-13 103.4 11.2 142 205-352 1-163 (166)
32 PRK15386 type III secretion pr 98.8 1.9E-08 4E-13 109.4 9.9 138 912-1082 48-187 (426)
33 PRK00080 ruvB Holliday junctio 98.8 7E-08 1.5E-12 106.9 14.8 242 177-443 24-275 (328)
34 KOG4341 F-box protein containi 98.8 6.7E-11 1.4E-15 124.0 -8.6 287 757-1087 138-441 (483)
35 TIGR00635 ruvB Holliday juncti 98.8 1.2E-07 2.7E-12 104.4 16.2 193 178-387 4-203 (305)
36 COG2909 MalT ATP-dependent tra 98.7 4.5E-07 9.8E-12 104.8 19.7 280 177-479 18-340 (894)
37 cd00116 LRR_RI Leucine-rich re 98.7 8.8E-10 1.9E-14 123.1 -3.7 88 550-637 17-119 (319)
38 PTZ00112 origin recognition co 98.7 9.6E-07 2.1E-11 102.8 20.5 212 177-389 754-986 (1164)
39 KOG0532 Leucine-rich repeat (L 98.6 1.8E-09 3.8E-14 117.7 -3.8 173 552-767 94-270 (722)
40 PRK13342 recombination factor 98.6 6.1E-07 1.3E-11 102.5 14.6 177 178-386 12-197 (413)
41 PF14580 LRR_9: Leucine-rich r 98.6 3E-08 6.5E-13 96.4 3.2 81 554-637 17-99 (175)
42 cd00116 LRR_RI Leucine-rich re 98.6 4.9E-09 1.1E-13 117.1 -3.3 88 549-637 44-148 (319)
43 KOG1259 Nischarin, modulator o 98.6 2E-08 4.2E-13 100.6 1.4 34 915-949 283-316 (490)
44 COG2256 MGS1 ATPase related to 98.5 6.2E-07 1.3E-11 95.0 12.3 153 203-381 47-208 (436)
45 COG3903 Predicted ATPase [Gene 98.5 1.5E-07 3.3E-12 100.4 6.3 236 203-447 13-258 (414)
46 PRK06893 DNA replication initi 98.5 8E-07 1.7E-11 92.6 11.6 154 204-387 39-205 (229)
47 PF13401 AAA_22: AAA domain; P 98.5 2.2E-07 4.8E-12 88.0 6.9 116 204-321 4-125 (131)
48 COG4886 Leucine-rich repeat (L 98.5 1.1E-07 2.4E-12 109.3 4.5 174 553-767 113-287 (394)
49 PRK05564 DNA polymerase III su 98.4 6.2E-06 1.3E-10 90.8 17.6 178 178-384 4-189 (313)
50 COG1474 CDC6 Cdc6-related prot 98.4 8.5E-06 1.8E-10 90.0 18.4 205 178-384 17-237 (366)
51 PRK14961 DNA polymerase III su 98.4 1E-05 2.2E-10 90.7 18.2 191 178-383 16-218 (363)
52 PF13173 AAA_14: AAA domain 98.4 1.1E-06 2.3E-11 82.5 8.6 119 205-344 3-127 (128)
53 KOG0532 Leucine-rich repeat (L 98.4 1.7E-08 3.6E-13 110.2 -4.7 179 554-776 73-252 (722)
54 PF05496 RuvB_N: Holliday junc 98.4 5.5E-06 1.2E-10 82.2 13.2 180 177-387 23-223 (233)
55 PRK14963 DNA polymerase III su 98.3 2E-06 4.3E-11 99.3 11.1 193 178-382 14-214 (504)
56 KOG3207 Beta-tubulin folding c 98.3 1.1E-07 2.3E-12 101.0 0.5 92 704-797 217-311 (505)
57 PF14580 LRR_9: Leucine-rich r 98.3 4.7E-07 1E-11 88.1 4.6 107 554-663 40-153 (175)
58 PTZ00202 tuzin; Provisional 98.3 2.3E-05 5.1E-10 84.8 17.5 169 173-351 257-433 (550)
59 TIGR03420 DnaA_homol_Hda DnaA 98.3 5.9E-06 1.3E-10 86.7 13.0 169 183-386 22-202 (226)
60 cd01128 rho_factor Transcripti 98.3 1.3E-06 2.7E-11 91.0 7.7 89 204-292 16-113 (249)
61 PRK12402 replication factor C 98.3 1.6E-05 3.4E-10 89.4 17.2 196 178-384 15-225 (337)
62 PRK14960 DNA polymerase III su 98.3 1.3E-05 2.9E-10 92.4 16.4 192 178-383 15-217 (702)
63 PRK14949 DNA polymerase III su 98.3 1.2E-05 2.7E-10 95.6 16.6 193 178-385 16-220 (944)
64 PF13191 AAA_16: AAA ATPase do 98.3 1.2E-06 2.5E-11 88.9 7.2 51 179-231 1-51 (185)
65 cd00009 AAA The AAA+ (ATPases 98.3 6.6E-06 1.4E-10 79.9 11.5 125 181-323 1-131 (151)
66 TIGR02903 spore_lon_C ATP-depe 98.3 1.7E-05 3.7E-10 94.5 16.7 202 178-388 154-398 (615)
67 COG3899 Predicted ATPase [Gene 98.2 1.4E-05 3E-10 98.6 16.1 260 180-447 2-327 (849)
68 KOG1259 Nischarin, modulator o 98.2 1.9E-07 4E-12 93.8 -0.2 137 552-726 280-416 (490)
69 PRK07003 DNA polymerase III su 98.2 2.1E-05 4.5E-10 91.8 16.2 193 178-385 16-221 (830)
70 PF13855 LRR_8: Leucine rich r 98.2 1.3E-06 2.8E-11 69.5 4.3 56 557-612 2-59 (61)
71 PRK09376 rho transcription ter 98.2 2.8E-06 6.1E-11 91.7 8.1 100 189-292 158-266 (416)
72 PLN03025 replication factor C 98.2 2.5E-05 5.3E-10 86.2 15.7 182 178-382 13-197 (319)
73 PRK14957 DNA polymerase III su 98.2 2.3E-05 5E-10 90.6 15.7 183 178-386 16-222 (546)
74 PRK14956 DNA polymerase III su 98.2 7E-06 1.5E-10 92.0 11.0 195 178-382 18-219 (484)
75 KOG3207 Beta-tubulin folding c 98.2 4.1E-07 8.8E-12 96.7 1.2 91 855-953 168-259 (505)
76 PRK00440 rfc replication facto 98.2 3.5E-05 7.6E-10 85.8 16.8 179 178-383 17-201 (319)
77 PRK12323 DNA polymerase III su 98.2 3.4E-05 7.3E-10 88.9 15.9 199 178-385 16-225 (700)
78 PRK06645 DNA polymerase III su 98.2 5.4E-05 1.2E-09 87.1 17.5 191 178-382 21-226 (507)
79 PRK04195 replication factor C 98.2 8.7E-05 1.9E-09 86.7 19.6 186 178-389 14-206 (482)
80 TIGR02397 dnaX_nterm DNA polym 98.1 8.8E-05 1.9E-09 83.9 18.5 182 178-386 14-219 (355)
81 PRK07940 DNA polymerase III su 98.1 6.7E-05 1.5E-09 83.8 17.0 192 178-385 5-213 (394)
82 PRK14962 DNA polymerase III su 98.1 4E-05 8.7E-10 87.8 15.4 195 178-389 14-223 (472)
83 PRK09087 hypothetical protein; 98.1 3.2E-05 6.9E-10 80.0 12.7 141 204-385 44-195 (226)
84 PRK13341 recombination factor 98.1 2.2E-05 4.8E-10 94.3 13.1 171 178-379 28-211 (725)
85 TIGR00678 holB DNA polymerase 98.1 0.0001 2.2E-09 74.6 16.2 91 281-381 95-187 (188)
86 PRK05896 DNA polymerase III su 98.1 4E-05 8.6E-10 88.6 14.4 196 178-387 16-223 (605)
87 PRK07994 DNA polymerase III su 98.1 4.9E-05 1.1E-09 89.3 15.4 194 178-385 16-220 (647)
88 PRK07471 DNA polymerase III su 98.1 0.0001 2.3E-09 81.7 17.2 196 178-386 19-239 (365)
89 PLN03150 hypothetical protein; 98.1 3.6E-06 7.7E-11 101.3 6.0 92 557-648 419-512 (623)
90 PF13855 LRR_8: Leucine rich r 98.1 5.2E-06 1.1E-10 66.0 5.0 59 997-1059 1-59 (61)
91 COG4886 Leucine-rich repeat (L 98.1 2.4E-06 5.3E-11 98.2 4.5 180 855-1066 112-293 (394)
92 PRK14951 DNA polymerase III su 98.1 6.9E-05 1.5E-09 87.9 16.4 195 178-384 16-224 (618)
93 PRK08691 DNA polymerase III su 98.1 4.8E-05 1E-09 88.8 14.8 191 178-383 16-218 (709)
94 KOG2028 ATPase related to the 98.1 2.8E-05 6E-10 80.8 11.3 157 203-380 161-331 (554)
95 PF05621 TniB: Bacterial TniB 98.1 0.0001 2.2E-09 77.1 15.4 193 186-381 45-257 (302)
96 PRK08727 hypothetical protein; 98.1 7.3E-05 1.6E-09 78.1 14.6 148 205-382 42-201 (233)
97 PRK14964 DNA polymerase III su 98.1 8.4E-05 1.8E-09 84.7 16.0 190 178-382 13-214 (491)
98 PRK14958 DNA polymerase III su 98.0 7.9E-05 1.7E-09 86.4 15.8 191 178-383 16-218 (509)
99 TIGR00767 rho transcription te 98.0 1.9E-05 4.1E-10 86.0 9.8 89 204-292 168-265 (415)
100 PRK09112 DNA polymerase III su 98.0 0.0002 4.3E-09 79.0 18.0 196 177-386 22-241 (351)
101 PRK14955 DNA polymerase III su 98.0 0.0001 2.2E-09 83.7 16.3 198 178-383 16-226 (397)
102 PRK08084 DNA replication initi 98.0 0.00012 2.6E-09 76.6 15.2 153 204-386 45-210 (235)
103 PF00308 Bac_DnaA: Bacterial d 98.0 6.7E-05 1.5E-09 77.3 12.6 182 180-383 11-206 (219)
104 PRK08903 DnaA regulatory inact 98.0 0.00013 2.9E-09 76.4 14.3 152 204-389 42-203 (227)
105 PRK05642 DNA replication initi 98.0 0.00014 3E-09 75.9 14.3 154 204-387 45-210 (234)
106 PRK09111 DNA polymerase III su 97.9 0.00018 4E-09 84.7 16.7 196 178-385 24-233 (598)
107 PRK14969 DNA polymerase III su 97.9 0.00017 3.6E-09 84.5 16.1 194 178-385 16-221 (527)
108 PRK14950 DNA polymerase III su 97.9 0.00015 3.2E-09 86.5 15.7 195 178-385 16-221 (585)
109 TIGR01242 26Sp45 26S proteasom 97.9 0.00013 2.8E-09 82.2 13.9 179 177-379 121-328 (364)
110 PF12799 LRR_4: Leucine Rich r 97.9 8.5E-06 1.8E-10 59.0 2.7 39 580-619 2-40 (44)
111 PRK07133 DNA polymerase III su 97.9 0.00036 7.9E-09 82.6 17.7 189 178-382 18-216 (725)
112 PRK14959 DNA polymerase III su 97.9 0.00029 6.3E-09 82.1 16.5 197 178-389 16-225 (624)
113 PLN03150 hypothetical protein; 97.9 1.5E-05 3.3E-10 95.9 6.2 96 547-642 433-531 (623)
114 PRK14954 DNA polymerase III su 97.9 0.00039 8.3E-09 82.1 17.6 195 178-380 16-223 (620)
115 PRK14952 DNA polymerase III su 97.9 0.00038 8.3E-09 81.5 17.2 197 178-389 13-224 (584)
116 PRK07764 DNA polymerase III su 97.8 0.00037 8E-09 85.1 17.2 190 178-382 15-218 (824)
117 PRK14970 DNA polymerase III su 97.8 0.00056 1.2E-08 77.4 17.6 177 178-382 17-206 (367)
118 KOG2227 Pre-initiation complex 97.8 0.00037 8E-09 75.7 14.9 177 176-353 148-339 (529)
119 PF12799 LRR_4: Leucine Rich r 97.8 1.9E-05 4.1E-10 57.2 3.4 40 556-595 1-40 (44)
120 PRK14087 dnaA chromosomal repl 97.8 0.00021 4.5E-09 82.0 13.7 168 204-387 141-321 (450)
121 PRK08451 DNA polymerase III su 97.8 0.00064 1.4E-08 78.4 17.4 193 178-385 14-218 (535)
122 PRK14953 DNA polymerase III su 97.8 0.00085 1.8E-08 77.5 18.4 195 178-386 16-221 (486)
123 PRK11331 5-methylcytosine-spec 97.8 0.00015 3.2E-09 80.6 11.3 108 178-296 175-286 (459)
124 KOG0989 Replication factor C, 97.8 0.0002 4.4E-09 73.4 11.2 183 177-379 35-224 (346)
125 PHA02544 44 clamp loader, smal 97.8 0.00027 5.9E-09 78.4 13.6 147 178-350 21-171 (316)
126 PRK14948 DNA polymerase III su 97.7 0.00092 2E-08 79.5 17.9 196 178-385 16-222 (620)
127 PRK06620 hypothetical protein; 97.7 0.00082 1.8E-08 68.9 15.3 136 205-383 45-187 (214)
128 KOG2543 Origin recognition com 97.7 0.00021 4.6E-09 75.5 10.4 166 177-350 5-191 (438)
129 KOG0531 Protein phosphatase 1, 97.7 6.9E-06 1.5E-10 94.5 -1.1 101 551-655 90-191 (414)
130 PRK06305 DNA polymerase III su 97.7 0.00092 2E-08 76.8 16.0 188 178-380 17-217 (451)
131 PRK14971 DNA polymerase III su 97.7 0.0013 2.9E-08 78.2 17.8 192 178-382 17-219 (614)
132 CHL00181 cbbX CbbX; Provisiona 97.6 0.0018 4E-08 69.5 17.1 133 205-353 60-210 (287)
133 TIGR02881 spore_V_K stage V sp 97.6 0.00075 1.6E-08 72.1 14.1 159 179-353 7-192 (261)
134 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00049 1.1E-08 85.2 14.3 180 178-378 187-389 (852)
135 TIGR02639 ClpA ATP-dependent C 97.6 0.00052 1.1E-08 84.5 14.4 154 178-352 182-358 (731)
136 KOG2120 SCF ubiquitin ligase, 97.6 5.8E-07 1.2E-11 90.5 -9.2 36 892-927 234-271 (419)
137 PRK03992 proteasome-activating 97.6 0.00044 9.5E-09 78.2 12.5 177 178-378 131-336 (389)
138 PRK06647 DNA polymerase III su 97.6 0.0019 4.1E-08 76.0 17.9 191 178-383 16-218 (563)
139 TIGR00362 DnaA chromosomal rep 97.6 0.002 4.4E-08 73.9 17.7 160 204-383 136-308 (405)
140 PF14516 AAA_35: AAA-like doma 97.6 0.0029 6.3E-08 69.9 17.9 202 176-392 9-246 (331)
141 TIGR00602 rad24 checkpoint pro 97.5 0.00064 1.4E-08 80.1 12.8 52 177-228 83-134 (637)
142 CHL00095 clpC Clp protease ATP 97.5 0.0008 1.7E-08 83.9 14.4 154 179-351 180-353 (821)
143 TIGR02880 cbbX_cfxQ probable R 97.5 0.0011 2.4E-08 71.3 13.4 131 206-352 60-208 (284)
144 PRK14965 DNA polymerase III su 97.5 0.0017 3.8E-08 77.0 16.2 193 178-385 16-221 (576)
145 PRK05563 DNA polymerase III su 97.5 0.0032 7E-08 74.4 18.0 192 178-383 16-218 (559)
146 PRK14088 dnaA chromosomal repl 97.5 0.0013 2.8E-08 75.4 14.0 160 204-382 130-302 (440)
147 PF00004 AAA: ATPase family as 97.5 0.00029 6.2E-09 66.7 7.4 97 207-322 1-112 (132)
148 PRK00149 dnaA chromosomal repl 97.5 0.0034 7.4E-08 72.9 17.1 159 204-382 148-319 (450)
149 KOG1859 Leucine-rich repeat pr 97.5 2.5E-06 5.5E-11 96.1 -8.2 125 916-1084 164-291 (1096)
150 KOG2120 SCF ubiquitin ligase, 97.4 1.8E-06 4E-11 87.0 -8.6 105 813-927 257-374 (419)
151 PRK05707 DNA polymerase III su 97.4 0.0029 6.2E-08 69.3 15.2 168 203-385 21-203 (328)
152 KOG1909 Ran GTPase-activating 97.4 1.4E-05 3E-10 83.1 -3.6 199 550-767 24-251 (382)
153 PRK07399 DNA polymerase III su 97.4 0.0077 1.7E-07 65.6 17.3 193 179-385 5-221 (314)
154 KOG4579 Leucine-rich repeat (L 97.3 1E-05 2.3E-10 72.1 -4.0 98 557-656 28-129 (177)
155 KOG0991 Replication factor C, 97.3 0.0023 4.9E-08 62.8 10.9 100 178-303 27-134 (333)
156 PRK14086 dnaA chromosomal repl 97.3 0.0033 7.2E-08 73.1 14.3 155 205-379 315-482 (617)
157 PRK10536 hypothetical protein; 97.3 0.0037 8.1E-08 64.3 13.0 132 179-324 56-215 (262)
158 PRK11034 clpA ATP-dependent Cl 97.3 0.0023 5E-08 77.7 13.5 155 179-352 187-362 (758)
159 smart00382 AAA ATPases associa 97.3 0.0016 3.5E-08 62.4 9.8 88 205-295 3-91 (148)
160 COG1373 Predicted ATPase (AAA+ 97.2 0.0041 8.8E-08 70.3 14.2 119 206-348 39-163 (398)
161 PTZ00361 26 proteosome regulat 97.2 0.0012 2.5E-08 74.8 9.7 156 178-352 183-367 (438)
162 PRK08118 topology modulation p 97.2 0.00016 3.6E-09 70.9 2.6 33 206-238 3-37 (167)
163 PTZ00454 26S protease regulato 97.2 0.0049 1.1E-07 69.3 14.3 178 178-379 145-351 (398)
164 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0041 9E-08 77.9 15.1 155 178-352 173-349 (852)
165 PRK12422 chromosomal replicati 97.2 0.0048 1E-07 70.7 14.1 154 204-378 141-306 (445)
166 COG0593 DnaA ATPase involved i 97.2 0.014 3E-07 64.6 16.9 132 203-353 112-258 (408)
167 KOG0531 Protein phosphatase 1, 97.1 5.4E-05 1.2E-09 87.1 -2.2 100 553-656 69-168 (414)
168 PF13177 DNA_pol3_delta2: DNA 97.1 0.0081 1.8E-07 58.6 13.2 129 182-323 1-143 (162)
169 COG3267 ExeA Type II secretory 97.1 0.02 4.4E-07 57.9 15.9 180 204-387 51-247 (269)
170 PRK08116 hypothetical protein; 97.1 0.0016 3.4E-08 69.3 8.8 104 205-322 115-221 (268)
171 KOG3665 ZYG-1-like serine/thre 97.1 0.00031 6.8E-09 84.2 3.8 108 520-637 145-261 (699)
172 PRK10865 protein disaggregatio 97.1 0.0078 1.7E-07 75.1 15.7 155 178-352 178-354 (857)
173 KOG1947 Leucine rich repeat pr 97.1 3.1E-05 6.8E-10 92.1 -5.3 39 891-929 268-308 (482)
174 PRK10787 DNA-binding ATP-depen 97.1 0.031 6.8E-07 68.7 20.2 165 177-352 321-506 (784)
175 CHL00176 ftsH cell division pr 97.1 0.0037 8.1E-08 74.5 12.0 177 178-378 183-387 (638)
176 COG2255 RuvB Holliday junction 97.1 0.007 1.5E-07 61.8 11.9 174 178-382 26-220 (332)
177 PF05673 DUF815: Protein of un 97.0 0.016 3.4E-07 59.0 14.2 105 176-308 25-133 (249)
178 PRK07261 topology modulation p 97.0 0.0015 3.2E-08 64.6 6.9 64 206-292 2-67 (171)
179 TIGR03689 pup_AAA proteasome A 97.0 0.0051 1.1E-07 70.7 11.7 165 178-352 182-378 (512)
180 TIGR02640 gas_vesic_GvpN gas v 97.0 0.021 4.5E-07 60.9 15.7 56 185-251 9-64 (262)
181 PRK08058 DNA polymerase III su 97.0 0.019 4.2E-07 63.4 15.7 161 179-350 6-180 (329)
182 PRK12608 transcription termina 97.0 0.0041 8.9E-08 67.7 10.0 102 186-291 119-229 (380)
183 COG1223 Predicted ATPase (AAA+ 96.9 0.011 2.5E-07 59.2 12.0 177 178-379 121-319 (368)
184 TIGR02639 ClpA ATP-dependent C 96.9 0.011 2.3E-07 73.1 14.7 119 178-308 454-579 (731)
185 PRK06871 DNA polymerase III su 96.9 0.04 8.7E-07 59.9 17.2 175 187-382 11-200 (325)
186 KOG1909 Ran GTPase-activating 96.9 3.9E-05 8.4E-10 79.8 -5.5 172 574-767 25-223 (382)
187 KOG1859 Leucine-rich repeat pr 96.9 2.5E-05 5.3E-10 88.4 -7.5 96 557-656 165-260 (1096)
188 PRK08769 DNA polymerase III su 96.9 0.038 8.1E-07 60.0 16.8 97 280-386 111-209 (319)
189 KOG4579 Leucine-rich repeat (L 96.9 0.00012 2.7E-09 65.5 -1.9 92 552-645 49-141 (177)
190 TIGR01241 FtsH_fam ATP-depende 96.9 0.0073 1.6E-07 71.1 12.1 178 178-379 55-260 (495)
191 PF04665 Pox_A32: Poxvirus A32 96.8 0.0021 4.5E-08 65.9 6.1 36 205-241 14-49 (241)
192 KOG1514 Origin recognition com 96.8 0.031 6.8E-07 64.4 15.8 170 179-352 397-589 (767)
193 PRK06090 DNA polymerase III su 96.8 0.052 1.1E-06 58.9 16.9 176 186-385 11-201 (319)
194 TIGR00763 lon ATP-dependent pr 96.8 0.033 7.3E-07 69.2 17.7 52 177-228 319-371 (775)
195 COG1222 RPT1 ATP-dependent 26S 96.8 0.044 9.5E-07 58.2 15.4 186 180-390 153-372 (406)
196 PRK10865 protein disaggregatio 96.8 0.012 2.6E-07 73.5 13.5 124 178-308 568-696 (857)
197 PRK06526 transposase; Provisio 96.8 0.0019 4.2E-08 67.9 5.6 100 205-322 99-201 (254)
198 KOG3665 ZYG-1-like serine/thre 96.7 0.00093 2E-08 80.2 3.1 78 556-635 122-204 (699)
199 KOG2982 Uncharacterized conser 96.7 0.00016 3.4E-09 73.4 -2.8 83 554-637 69-157 (418)
200 TIGR03345 VI_ClpV1 type VI sec 96.7 0.0066 1.4E-07 75.5 10.3 135 178-320 566-717 (852)
201 PRK08181 transposase; Validate 96.7 0.0033 7.1E-08 66.4 6.6 101 205-322 107-209 (269)
202 PRK13531 regulatory ATPase Rav 96.7 0.0083 1.8E-07 67.6 10.0 151 179-351 21-193 (498)
203 PRK08939 primosomal protein Dn 96.7 0.0059 1.3E-07 66.2 8.6 121 182-320 135-259 (306)
204 TIGR03346 chaperone_ClpB ATP-d 96.7 0.0099 2.1E-07 74.6 11.7 124 178-309 565-694 (852)
205 PF10443 RNA12: RNA12 protein; 96.6 0.14 3E-06 56.6 18.8 203 183-396 1-289 (431)
206 PF01695 IstB_IS21: IstB-like 96.6 0.0022 4.8E-08 63.6 4.4 100 204-321 47-149 (178)
207 PF02562 PhoH: PhoH-like prote 96.6 0.0067 1.5E-07 60.8 7.7 128 181-322 3-156 (205)
208 KOG1947 Leucine rich repeat pr 96.5 0.00016 3.4E-09 86.1 -5.1 138 939-1085 242-389 (482)
209 PRK07993 DNA polymerase III su 96.5 0.078 1.7E-06 58.4 16.2 177 186-383 10-202 (334)
210 KOG2035 Replication factor C, 96.5 0.029 6.2E-07 57.1 11.3 225 180-426 15-282 (351)
211 PRK06921 hypothetical protein; 96.5 0.0095 2.1E-07 63.3 8.7 38 204-241 117-154 (266)
212 PRK09183 transposase/IS protei 96.5 0.0047 1E-07 65.5 6.3 100 205-321 103-205 (259)
213 COG2812 DnaX DNA polymerase II 96.5 0.017 3.7E-07 66.0 10.9 188 178-379 16-214 (515)
214 PRK04296 thymidine kinase; Pro 96.4 0.0063 1.4E-07 61.3 6.6 114 205-324 3-118 (190)
215 COG0542 clpA ATP-binding subun 96.4 0.0076 1.6E-07 71.7 8.1 125 178-309 491-620 (786)
216 smart00763 AAA_PrkA PrkA AAA d 96.4 0.0031 6.6E-08 68.4 4.5 50 179-228 52-102 (361)
217 PF07693 KAP_NTPase: KAP famil 96.4 0.064 1.4E-06 59.8 15.3 45 183-229 1-45 (325)
218 CHL00095 clpC Clp protease ATP 96.4 0.016 3.5E-07 72.5 11.0 122 178-308 509-637 (821)
219 KOG0734 AAA+-type ATPase conta 96.4 0.011 2.4E-07 65.3 8.2 53 179-231 305-364 (752)
220 KOG1969 DNA replication checkp 96.3 0.011 2.5E-07 68.0 8.4 86 202-304 324-409 (877)
221 PRK12377 putative replication 96.3 0.0066 1.4E-07 63.3 6.1 101 204-320 101-204 (248)
222 CHL00195 ycf46 Ycf46; Provisio 96.3 0.031 6.7E-07 64.5 11.8 157 179-354 229-407 (489)
223 PRK11889 flhF flagellar biosyn 96.3 0.042 9E-07 60.2 11.9 89 203-293 240-331 (436)
224 COG0470 HolB ATPase involved i 96.2 0.029 6.3E-07 62.6 11.4 125 179-322 2-149 (325)
225 PRK04132 replication factor C 96.2 0.084 1.8E-06 64.5 15.7 155 212-385 574-731 (846)
226 KOG0731 AAA+-type ATPase conta 96.2 0.062 1.3E-06 63.7 14.0 180 178-381 311-520 (774)
227 PRK11034 clpA ATP-dependent Cl 96.2 0.011 2.5E-07 71.8 8.4 120 179-308 459-583 (758)
228 COG5238 RNA1 Ran GTPase-activa 96.2 0.0018 3.8E-08 65.2 1.1 195 554-768 28-253 (388)
229 KOG2228 Origin recognition com 96.2 0.033 7.1E-07 58.4 10.2 171 179-352 25-219 (408)
230 cd01133 F1-ATPase_beta F1 ATP 96.2 0.018 3.8E-07 60.5 8.3 88 204-291 69-172 (274)
231 TIGR01243 CDC48 AAA family ATP 96.2 0.042 9.1E-07 68.2 13.2 178 179-380 179-382 (733)
232 COG1875 NYN ribonuclease and A 96.2 0.012 2.5E-07 62.4 6.9 133 180-322 226-388 (436)
233 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.046 1E-06 52.2 10.6 105 205-327 27-132 (144)
234 PRK06964 DNA polymerase III su 96.1 0.12 2.6E-06 56.7 15.0 94 280-385 130-225 (342)
235 PRK06835 DNA replication prote 96.1 0.0092 2E-07 65.2 6.1 102 205-321 184-288 (329)
236 PRK08699 DNA polymerase III su 96.1 0.059 1.3E-06 59.1 12.4 70 281-350 112-183 (325)
237 PF13207 AAA_17: AAA domain; P 96.1 0.0039 8.5E-08 57.8 2.8 22 206-227 1-22 (121)
238 COG1484 DnaC DNA replication p 96.1 0.0099 2.1E-07 62.6 6.0 81 204-300 105-185 (254)
239 TIGR02237 recomb_radB DNA repa 96.1 0.018 3.8E-07 59.5 7.9 49 202-252 10-58 (209)
240 PRK09361 radB DNA repair and r 96.0 0.018 3.8E-07 60.2 7.7 46 203-250 22-67 (225)
241 PRK07952 DNA replication prote 96.0 0.013 2.8E-07 61.0 6.5 103 204-321 99-204 (244)
242 PRK05541 adenylylsulfate kinas 96.0 0.021 4.5E-07 57.0 7.9 36 203-239 6-41 (176)
243 PF07728 AAA_5: AAA domain (dy 96.0 0.0035 7.5E-08 59.8 2.2 88 207-306 2-89 (139)
244 PF00448 SRP54: SRP54-type pro 96.0 0.022 4.7E-07 57.4 7.9 88 204-292 1-93 (196)
245 KOG0741 AAA+-type ATPase [Post 96.0 0.18 4E-06 56.1 14.9 148 202-375 536-704 (744)
246 cd03222 ABC_RNaseL_inhibitor T 96.0 0.046 1E-06 54.0 9.7 105 205-327 26-137 (177)
247 TIGR02902 spore_lonB ATP-depen 96.0 0.04 8.7E-07 65.0 11.0 44 179-227 66-109 (531)
248 KOG2739 Leucine-rich acidic nu 95.9 0.0035 7.6E-08 63.4 1.8 105 553-661 40-154 (260)
249 cd03247 ABCC_cytochrome_bd The 95.9 0.059 1.3E-06 53.8 10.7 117 205-326 29-161 (178)
250 TIGR01243 CDC48 AAA family ATP 95.9 0.082 1.8E-06 65.6 14.1 178 178-379 453-657 (733)
251 cd03238 ABC_UvrA The excision 95.9 0.045 9.7E-07 54.1 9.5 113 204-326 21-153 (176)
252 KOG1644 U2-associated snRNP A' 95.9 0.0086 1.9E-07 58.0 4.1 99 556-657 42-147 (233)
253 KOG0733 Nuclear AAA ATPase (VC 95.8 0.12 2.6E-06 58.6 13.2 97 178-293 190-293 (802)
254 cd01123 Rad51_DMC1_radA Rad51_ 95.8 0.032 7E-07 58.7 8.8 50 202-251 17-71 (235)
255 PRK06696 uridine kinase; Valid 95.8 0.011 2.3E-07 61.6 5.0 45 182-228 2-46 (223)
256 PF00560 LRR_1: Leucine Rich R 95.8 0.0042 9.1E-08 37.2 1.1 20 580-599 1-20 (22)
257 PF08423 Rad51: Rad51; InterP 95.8 0.02 4.2E-07 60.6 7.0 56 203-259 37-97 (256)
258 KOG1644 U2-associated snRNP A' 95.8 0.017 3.7E-07 56.0 5.8 86 992-1082 59-150 (233)
259 cd00561 CobA_CobO_BtuR ATP:cor 95.8 0.034 7.3E-07 53.3 7.8 118 205-324 3-140 (159)
260 PHA02244 ATPase-like protein 95.8 0.12 2.6E-06 56.4 12.8 22 206-227 121-142 (383)
261 PRK00771 signal recognition pa 95.8 0.07 1.5E-06 60.6 11.5 88 203-292 94-185 (437)
262 cd03228 ABCC_MRP_Like The MRP 95.8 0.087 1.9E-06 52.2 11.0 118 204-327 28-160 (171)
263 cd01393 recA_like RecA is a b 95.7 0.037 8E-07 57.9 8.6 88 203-292 18-124 (226)
264 cd03223 ABCD_peroxisomal_ALDP 95.7 0.09 1.9E-06 51.7 10.8 115 204-325 27-151 (166)
265 KOG2982 Uncharacterized conser 95.7 0.007 1.5E-07 61.9 2.9 79 556-637 45-132 (418)
266 cd01120 RecA-like_NTPases RecA 95.7 0.034 7.4E-07 54.6 8.0 39 206-245 1-39 (165)
267 TIGR03499 FlhF flagellar biosy 95.7 0.043 9.4E-07 59.1 8.9 87 203-291 193-281 (282)
268 COG2607 Predicted ATPase (AAA+ 95.6 0.14 3E-06 51.4 11.2 117 178-322 60-183 (287)
269 PRK13695 putative NTPase; Prov 95.6 0.017 3.7E-07 57.4 5.2 23 206-228 2-24 (174)
270 cd01394 radB RadB. The archaea 95.6 0.034 7.4E-07 57.7 7.6 44 202-246 17-60 (218)
271 KOG0730 AAA+-type ATPase [Post 95.6 0.46 1E-05 54.9 16.6 132 202-352 466-615 (693)
272 PRK14722 flhF flagellar biosyn 95.5 0.039 8.4E-07 61.0 8.1 89 204-294 137-227 (374)
273 PF00485 PRK: Phosphoribulokin 95.5 0.051 1.1E-06 55.1 8.5 81 206-286 1-87 (194)
274 cd03214 ABC_Iron-Siderophores_ 95.5 0.098 2.1E-06 52.3 10.4 120 205-327 26-163 (180)
275 PF05659 RPW8: Arabidopsis bro 95.5 0.28 6.1E-06 46.3 12.4 80 3-86 6-86 (147)
276 PRK12724 flagellar biosynthesi 95.4 0.072 1.6E-06 59.3 9.6 24 204-227 223-246 (432)
277 KOG0744 AAA+-type ATPase [Post 95.4 0.052 1.1E-06 56.5 7.8 80 204-293 177-261 (423)
278 PRK08233 hypothetical protein; 95.4 0.048 1E-06 54.8 7.7 25 204-228 3-27 (182)
279 TIGR02858 spore_III_AA stage I 95.4 0.087 1.9E-06 55.9 9.8 128 186-326 97-233 (270)
280 PRK09270 nucleoside triphospha 95.4 0.079 1.7E-06 55.3 9.5 28 202-229 31-58 (229)
281 COG1618 Predicted nucleotide k 95.4 0.013 2.9E-07 54.6 3.2 31 204-234 5-35 (179)
282 PLN00020 ribulose bisphosphate 95.3 0.031 6.8E-07 60.3 6.3 29 202-230 146-174 (413)
283 PRK14974 cell division protein 95.3 0.17 3.7E-06 55.4 12.1 90 203-294 139-234 (336)
284 PF13604 AAA_30: AAA domain; P 95.3 0.025 5.4E-07 57.3 5.4 103 205-321 19-130 (196)
285 TIGR02238 recomb_DMC1 meiotic 95.3 0.045 9.8E-07 59.5 7.6 57 203-260 95-156 (313)
286 PF14532 Sigma54_activ_2: Sigm 95.2 0.015 3.3E-07 55.2 3.3 107 181-322 1-110 (138)
287 COG2884 FtsE Predicted ATPase 95.2 0.17 3.7E-06 48.8 10.1 124 204-329 28-204 (223)
288 COG1102 Cmk Cytidylate kinase 95.2 0.037 8E-07 51.7 5.6 44 206-261 2-45 (179)
289 cd03115 SRP The signal recogni 95.2 0.097 2.1E-06 52.0 9.3 23 206-228 2-24 (173)
290 cd03216 ABC_Carb_Monos_I This 95.2 0.08 1.7E-06 51.9 8.5 117 205-327 27-147 (163)
291 KOG0728 26S proteasome regulat 95.2 0.42 9.1E-06 47.9 13.0 150 180-352 148-331 (404)
292 TIGR01359 UMP_CMP_kin_fam UMP- 95.2 0.059 1.3E-06 54.2 7.7 22 206-227 1-22 (183)
293 KOG2004 Mitochondrial ATP-depe 95.2 0.16 3.5E-06 58.8 11.6 56 177-232 410-466 (906)
294 KOG0733 Nuclear AAA ATPase (VC 95.2 0.32 7E-06 55.4 13.5 155 204-379 545-718 (802)
295 PRK05201 hslU ATP-dependent pr 95.2 0.042 9.1E-07 60.8 6.7 82 177-258 14-107 (443)
296 TIGR02012 tigrfam_recA protein 95.1 0.052 1.1E-06 58.7 7.3 85 202-292 53-143 (321)
297 COG0563 Adk Adenylate kinase a 95.1 0.031 6.7E-07 55.2 5.2 29 206-234 2-30 (178)
298 cd01122 GP4d_helicase GP4d_hel 95.1 0.15 3.3E-06 55.0 11.2 52 204-257 30-81 (271)
299 PRK12723 flagellar biosynthesi 95.1 0.14 3.1E-06 57.1 11.0 89 203-294 173-266 (388)
300 cd02027 APSK Adenosine 5'-phos 95.1 0.12 2.6E-06 49.7 9.1 23 206-228 1-23 (149)
301 COG0572 Udk Uridine kinase [Nu 95.1 0.034 7.4E-07 55.7 5.4 78 202-283 6-85 (218)
302 cd01131 PilT Pilus retraction 95.1 0.04 8.8E-07 55.9 6.1 111 205-326 2-113 (198)
303 PF00158 Sigma54_activat: Sigm 95.1 0.11 2.5E-06 50.8 9.0 132 180-322 1-144 (168)
304 cd02025 PanK Pantothenate kina 95.1 0.075 1.6E-06 54.8 8.1 74 206-280 1-76 (220)
305 PRK05800 cobU adenosylcobinami 95.1 0.023 5E-07 55.7 4.0 80 206-291 3-85 (170)
306 PRK10867 signal recognition pa 95.1 0.11 2.3E-06 59.0 9.8 25 203-227 99-123 (433)
307 cd00983 recA RecA is a bacter 95.0 0.057 1.2E-06 58.4 7.2 85 202-292 53-143 (325)
308 PTZ00088 adenylate kinase 1; P 95.0 0.025 5.3E-07 58.5 4.3 23 206-228 8-30 (229)
309 TIGR00390 hslU ATP-dependent p 95.0 0.055 1.2E-06 59.9 7.1 81 178-258 12-104 (441)
310 PRK06067 flagellar accessory p 95.0 0.084 1.8E-06 55.4 8.3 87 202-292 23-130 (234)
311 PRK12727 flagellar biosynthesi 95.0 0.073 1.6E-06 60.8 8.1 88 203-292 349-438 (559)
312 PRK15455 PrkA family serine pr 94.9 0.021 4.6E-07 65.2 3.9 49 179-227 77-126 (644)
313 COG1121 ZnuC ABC-type Mn/Zn tr 94.9 0.19 4.1E-06 51.9 10.3 121 205-327 31-204 (254)
314 KOG0735 AAA+-type ATPase [Post 94.9 0.049 1.1E-06 62.7 6.6 73 203-292 430-504 (952)
315 cd03246 ABCC_Protease_Secretio 94.9 0.12 2.7E-06 51.2 8.9 119 205-326 29-160 (173)
316 PF13671 AAA_33: AAA domain; P 94.9 0.033 7.2E-07 53.3 4.8 22 206-227 1-22 (143)
317 TIGR00959 ffh signal recogniti 94.9 0.16 3.5E-06 57.6 10.6 25 203-227 98-122 (428)
318 PTZ00301 uridine kinase; Provi 94.9 0.045 9.8E-07 55.7 5.7 24 204-227 3-26 (210)
319 COG0542 clpA ATP-binding subun 94.9 0.46 1E-05 57.1 14.7 154 179-352 171-346 (786)
320 COG1126 GlnQ ABC-type polar am 94.9 0.26 5.7E-06 48.8 10.5 124 204-329 28-203 (240)
321 cd01125 repA Hexameric Replica 94.8 0.2 4.3E-06 52.8 10.7 22 206-227 3-24 (239)
322 PRK09354 recA recombinase A; P 94.8 0.075 1.6E-06 58.0 7.5 85 202-292 58-148 (349)
323 PRK12726 flagellar biosynthesi 94.8 0.23 5E-06 54.5 11.1 90 203-293 205-296 (407)
324 TIGR00554 panK_bact pantothena 94.8 0.14 3E-06 54.8 9.3 81 202-283 60-142 (290)
325 COG1136 SalX ABC-type antimicr 94.8 0.1 2.2E-06 52.9 7.9 61 269-329 147-210 (226)
326 cd03230 ABC_DR_subfamily_A Thi 94.8 0.19 4.1E-06 49.8 9.9 118 205-327 27-160 (173)
327 PRK04301 radA DNA repair and r 94.8 0.1 2.2E-06 57.5 8.8 56 203-259 101-161 (317)
328 cd03281 ABC_MSH5_euk MutS5 hom 94.8 0.051 1.1E-06 55.8 5.9 121 204-328 29-160 (213)
329 PRK05439 pantothenate kinase; 94.8 0.17 3.7E-06 54.5 9.9 80 202-283 84-166 (311)
330 cd03217 ABC_FeS_Assembly ABC-t 94.8 0.15 3.2E-06 52.0 9.2 24 204-227 26-49 (200)
331 TIGR00064 ftsY signal recognit 94.8 0.22 4.7E-06 53.2 10.8 90 202-293 70-165 (272)
332 COG0464 SpoVK ATPases of the A 94.7 0.26 5.7E-06 58.3 12.6 133 202-353 274-424 (494)
333 PRK05703 flhF flagellar biosyn 94.7 0.19 4.1E-06 57.3 10.9 87 204-292 221-309 (424)
334 PRK00889 adenylylsulfate kinas 94.7 0.066 1.4E-06 53.3 6.4 25 204-228 4-28 (175)
335 COG4608 AppF ABC-type oligopep 94.7 0.12 2.5E-06 53.5 8.1 126 204-330 39-178 (268)
336 PRK13539 cytochrome c biogenes 94.7 0.22 4.7E-06 51.2 10.2 61 275-338 138-200 (207)
337 cd03282 ABC_MSH4_euk MutS4 hom 94.6 0.083 1.8E-06 53.7 6.9 118 204-329 29-158 (204)
338 KOG0743 AAA+-type ATPase [Post 94.6 2.5 5.4E-05 47.1 18.3 152 204-389 235-413 (457)
339 COG0396 sufC Cysteine desulfur 94.6 0.44 9.6E-06 47.7 11.4 62 273-334 153-216 (251)
340 COG2842 Uncharacterized ATPase 94.6 0.54 1.2E-05 49.2 12.6 98 205-309 95-192 (297)
341 PLN03186 DNA repair protein RA 94.5 0.15 3.2E-06 56.1 8.9 57 203-260 122-183 (342)
342 PF00006 ATP-synt_ab: ATP synt 94.5 0.1 2.3E-06 53.1 7.2 84 205-291 16-114 (215)
343 PRK07667 uridine kinase; Provi 94.5 0.048 1E-06 55.2 4.8 39 187-228 3-41 (193)
344 PRK14723 flhF flagellar biosyn 94.5 0.26 5.6E-06 59.4 11.5 86 204-292 185-273 (767)
345 PF13238 AAA_18: AAA domain; P 94.5 0.025 5.4E-07 53.0 2.6 21 207-227 1-21 (129)
346 TIGR02236 recomb_radA DNA repa 94.5 0.14 3.1E-06 56.3 8.9 56 203-259 94-154 (310)
347 PLN03187 meiotic recombination 94.4 0.18 3.9E-06 55.3 9.4 59 202-261 124-187 (344)
348 KOG1532 GTPase XAB1, interacts 94.4 0.13 2.9E-06 52.2 7.5 102 202-313 17-137 (366)
349 KOG2123 Uncharacterized conser 94.4 0.0023 5E-08 64.7 -4.7 103 555-660 18-127 (388)
350 cd02019 NK Nucleoside/nucleoti 94.4 0.028 6.1E-07 45.7 2.4 22 206-227 1-22 (69)
351 COG0468 RecA RecA/RadA recombi 94.4 0.16 3.5E-06 53.6 8.6 89 202-292 58-151 (279)
352 PRK05480 uridine/cytidine kina 94.4 0.033 7.2E-07 57.3 3.5 26 203-228 5-30 (209)
353 COG1428 Deoxynucleoside kinase 94.4 0.028 6.1E-07 55.4 2.7 26 204-229 4-29 (216)
354 PRK06217 hypothetical protein; 94.4 0.058 1.3E-06 54.1 5.1 34 206-239 3-38 (183)
355 PF12775 AAA_7: P-loop contain 94.3 0.041 8.9E-07 58.7 4.1 91 187-295 22-113 (272)
356 PF00560 LRR_1: Leucine Rich R 94.3 0.02 4.4E-07 34.2 1.0 22 557-578 1-22 (22)
357 COG1124 DppF ABC-type dipeptid 94.3 0.26 5.6E-06 49.9 9.2 56 274-329 151-209 (252)
358 PRK07132 DNA polymerase III su 94.3 1.4 3E-05 47.6 15.6 151 204-384 18-184 (299)
359 PRK13543 cytochrome c biogenes 94.3 0.41 8.8E-06 49.4 11.3 24 205-228 38-61 (214)
360 COG0466 Lon ATP-dependent Lon 94.2 0.039 8.4E-07 64.0 3.8 163 177-353 322-509 (782)
361 PRK08972 fliI flagellum-specif 94.2 0.17 3.7E-06 56.8 8.7 85 204-291 162-261 (444)
362 PRK12597 F0F1 ATP synthase sub 94.2 0.12 2.7E-06 58.6 7.7 88 204-291 143-246 (461)
363 cd03237 ABC_RNaseL_inhibitor_d 94.2 0.32 7E-06 51.3 10.4 124 204-327 25-181 (246)
364 TIGR00235 udk uridine kinase. 94.2 0.038 8.2E-07 56.8 3.3 25 203-227 5-29 (207)
365 cd03250 ABCC_MRP_domain1 Domai 94.2 0.74 1.6E-05 47.1 12.9 25 204-228 31-55 (204)
366 PRK10733 hflB ATP-dependent me 94.2 0.17 3.7E-06 61.4 9.4 129 205-352 186-335 (644)
367 cd03232 ABC_PDR_domain2 The pl 94.1 0.28 6E-06 49.6 9.5 23 204-226 33-55 (192)
368 TIGR01425 SRP54_euk signal rec 94.1 0.29 6.3E-06 55.2 10.3 26 203-228 99-124 (429)
369 PRK09280 F0F1 ATP synthase sub 94.1 0.2 4.4E-06 56.8 9.0 88 204-291 144-247 (463)
370 TIGR00708 cobA cob(I)alamin ad 94.1 0.27 5.8E-06 47.8 8.6 118 204-323 5-141 (173)
371 TIGR02239 recomb_RAD51 DNA rep 94.1 0.19 4E-06 55.0 8.6 58 202-260 94-156 (316)
372 cd03215 ABC_Carb_Monos_II This 94.0 0.51 1.1E-05 47.3 11.1 24 205-228 27-50 (182)
373 PRK14721 flhF flagellar biosyn 94.0 0.23 5E-06 56.0 9.4 25 203-227 190-214 (420)
374 cd03283 ABC_MutS-like MutS-lik 94.0 0.071 1.5E-06 54.1 4.9 22 205-226 26-47 (199)
375 cd03235 ABC_Metallic_Cations A 94.0 0.3 6.6E-06 50.4 9.8 23 205-227 26-48 (213)
376 PRK06547 hypothetical protein; 94.0 0.069 1.5E-06 52.5 4.7 27 202-228 13-39 (172)
377 cd00267 ABC_ATPase ABC (ATP-bi 94.0 0.18 3.9E-06 49.1 7.6 117 205-328 26-146 (157)
378 KOG3864 Uncharacterized conser 94.0 0.0062 1.4E-07 59.0 -2.6 71 993-1064 121-191 (221)
379 PRK06995 flhF flagellar biosyn 94.0 0.28 6.1E-06 56.2 10.0 87 204-292 256-344 (484)
380 PRK00279 adk adenylate kinase; 94.0 0.098 2.1E-06 54.1 6.0 22 206-227 2-23 (215)
381 cd03229 ABC_Class3 This class 93.9 0.21 4.7E-06 49.8 8.2 23 205-227 27-49 (178)
382 TIGR03771 anch_rpt_ABC anchore 93.9 0.41 8.8E-06 49.8 10.5 23 205-227 7-29 (223)
383 cd03263 ABC_subfamily_A The AB 93.9 0.44 9.6E-06 49.5 10.9 23 205-227 29-51 (220)
384 PRK03846 adenylylsulfate kinas 93.9 0.13 2.9E-06 52.2 6.7 26 203-228 23-48 (198)
385 cd01135 V_A-ATPase_B V/A-type 93.9 0.26 5.6E-06 51.8 8.7 87 205-291 70-175 (276)
386 PF03205 MobB: Molybdopterin g 93.9 0.062 1.3E-06 50.8 3.8 39 205-243 1-39 (140)
387 PRK15429 formate hydrogenlyase 93.9 0.23 5E-06 61.2 9.9 135 178-322 376-521 (686)
388 PRK06762 hypothetical protein; 93.8 0.046 9.9E-07 53.9 3.1 24 204-227 2-25 (166)
389 PRK00625 shikimate kinase; Pro 93.8 0.04 8.7E-07 54.2 2.5 23 206-228 2-24 (173)
390 cd03369 ABCC_NFT1 Domain 2 of 93.8 0.87 1.9E-05 46.7 12.6 23 205-227 35-57 (207)
391 TIGR01069 mutS2 MutS2 family p 93.8 0.064 1.4E-06 65.9 4.8 184 204-403 322-518 (771)
392 COG4618 ArpD ABC-type protease 93.8 0.15 3.4E-06 56.8 7.1 22 205-226 363-384 (580)
393 PRK03839 putative kinase; Prov 93.7 0.043 9.2E-07 55.0 2.7 23 206-228 2-24 (180)
394 TIGR01817 nifA Nif-specific re 93.7 0.34 7.4E-06 57.8 10.8 134 177-321 195-340 (534)
395 COG3640 CooC CO dehydrogenase 93.7 0.079 1.7E-06 53.0 4.4 42 206-247 2-43 (255)
396 PTZ00035 Rad51 protein; Provis 93.7 0.32 6.9E-06 53.7 9.7 58 202-260 116-178 (337)
397 PRK11608 pspF phage shock prot 93.7 0.18 3.9E-06 55.7 7.7 133 179-321 7-150 (326)
398 CHL00206 ycf2 Ycf2; Provisiona 93.7 0.68 1.5E-05 60.5 13.3 28 203-230 1629-1656(2281)
399 TIGR03877 thermo_KaiC_1 KaiC d 93.7 0.27 5.9E-06 51.6 8.7 49 202-253 19-67 (237)
400 PRK09544 znuC high-affinity zi 93.6 0.42 9.1E-06 50.6 10.1 24 204-227 30-53 (251)
401 COG1419 FlhF Flagellar GTP-bin 93.6 0.38 8.3E-06 52.9 9.8 105 185-292 185-291 (407)
402 PRK09580 sufC cysteine desulfu 93.6 0.55 1.2E-05 49.9 11.0 23 205-227 28-50 (248)
403 PRK06002 fliI flagellum-specif 93.6 0.29 6.2E-06 55.3 9.0 86 204-291 165-263 (450)
404 TIGR03305 alt_F1F0_F1_bet alte 93.6 0.15 3.3E-06 57.5 6.9 88 204-291 138-241 (449)
405 PF07724 AAA_2: AAA domain (Cd 93.6 0.047 1E-06 53.7 2.6 26 204-229 3-28 (171)
406 PRK12678 transcription termina 93.6 0.11 2.3E-06 59.5 5.6 99 189-291 405-512 (672)
407 COG0465 HflB ATP-dependent Zn 93.6 0.48 1E-05 55.3 11.0 157 177-352 149-333 (596)
408 PLN02924 thymidylate kinase 93.6 0.24 5.2E-06 51.0 7.9 55 202-256 14-68 (220)
409 cd01124 KaiC KaiC is a circadi 93.5 0.16 3.5E-06 51.2 6.6 44 207-253 2-45 (187)
410 TIGR01360 aden_kin_iso1 adenyl 93.5 0.057 1.2E-06 54.6 3.2 25 203-227 2-26 (188)
411 PF08433 KTI12: Chromatin asso 93.5 0.15 3.3E-06 54.1 6.5 25 205-229 2-26 (270)
412 cd03254 ABCC_Glucan_exporter_l 93.5 0.81 1.8E-05 47.8 12.0 23 205-227 30-52 (229)
413 PRK08927 fliI flagellum-specif 93.5 0.3 6.5E-06 55.2 8.9 85 204-291 158-257 (442)
414 PF06309 Torsin: Torsin; Inte 93.5 0.11 2.3E-06 47.1 4.4 49 179-227 26-76 (127)
415 TIGR00455 apsK adenylylsulfate 93.4 0.38 8.3E-06 48.3 9.1 25 204-228 18-42 (184)
416 cd01428 ADK Adenylate kinase ( 93.4 0.23 5.1E-06 50.4 7.6 21 207-227 2-22 (194)
417 cd02021 GntK Gluconate kinase 93.4 0.53 1.1E-05 45.4 9.7 22 206-227 1-22 (150)
418 cd03264 ABC_drug_resistance_li 93.4 0.55 1.2E-05 48.4 10.4 22 206-227 27-48 (211)
419 TIGR01039 atpD ATP synthase, F 93.4 0.26 5.7E-06 55.6 8.3 88 204-291 143-246 (461)
420 PRK10416 signal recognition pa 93.4 0.54 1.2E-05 51.4 10.6 27 203-229 113-139 (318)
421 KOG2123 Uncharacterized conser 93.3 0.011 2.4E-07 59.9 -2.2 81 551-632 36-123 (388)
422 cd03253 ABCC_ATM1_transporter 93.3 0.67 1.4E-05 48.8 11.1 24 204-227 27-50 (236)
423 PF01583 APS_kinase: Adenylyls 93.3 0.071 1.5E-06 50.9 3.2 26 204-229 2-27 (156)
424 PRK13647 cbiO cobalt transport 93.3 0.53 1.1E-05 50.7 10.5 23 205-227 32-54 (274)
425 PF03969 AFG1_ATPase: AFG1-lik 93.3 0.25 5.4E-06 54.9 8.0 102 203-323 61-168 (362)
426 PRK15056 manganese/iron transp 93.3 0.61 1.3E-05 50.2 10.9 23 205-227 34-56 (272)
427 KOG0735 AAA+-type ATPase [Post 93.3 3 6.6E-05 48.8 16.3 155 179-352 668-848 (952)
428 PRK04040 adenylate kinase; Pro 93.3 0.063 1.4E-06 53.8 3.0 25 204-228 2-26 (188)
429 TIGR02974 phageshock_pspF psp 93.2 0.29 6.3E-06 54.0 8.4 45 180-227 1-45 (329)
430 TIGR03522 GldA_ABC_ATP gliding 93.2 0.72 1.6E-05 50.4 11.5 23 205-227 29-51 (301)
431 KOG3347 Predicted nucleotide k 93.2 0.13 2.9E-06 47.3 4.6 72 204-284 7-78 (176)
432 PF00910 RNA_helicase: RNA hel 93.2 0.05 1.1E-06 48.9 2.0 22 207-228 1-22 (107)
433 PHA00729 NTP-binding motif con 93.2 0.11 2.4E-06 52.7 4.7 24 204-227 17-40 (226)
434 PTZ00185 ATPase alpha subunit; 93.2 0.45 9.7E-06 54.0 9.6 89 204-292 189-299 (574)
435 KOG0924 mRNA splicing factor A 93.2 0.54 1.2E-05 54.0 10.2 129 185-324 359-512 (1042)
436 KOG0736 Peroxisome assembly fa 93.2 0.46 1E-05 55.7 9.9 97 178-293 672-775 (953)
437 PF13306 LRR_5: Leucine rich r 93.1 0.33 7.2E-06 45.3 7.6 33 1022-1057 79-111 (129)
438 cd03249 ABC_MTABC3_MDL1_MDL2 M 93.1 0.84 1.8E-05 48.1 11.5 24 204-227 29-52 (238)
439 PRK13765 ATP-dependent proteas 93.1 0.14 3E-06 61.2 6.0 75 178-260 31-105 (637)
440 PF12061 DUF3542: Protein of u 93.1 0.19 4.1E-06 52.0 6.1 56 31-86 317-373 (402)
441 PRK00131 aroK shikimate kinase 93.1 0.067 1.4E-06 53.3 2.9 25 204-228 4-28 (175)
442 PRK05986 cob(I)alamin adenolsy 93.1 0.29 6.3E-06 48.3 7.2 118 204-323 22-159 (191)
443 PRK05917 DNA polymerase III su 93.1 1 2.2E-05 48.0 11.8 130 186-339 5-154 (290)
444 COG1224 TIP49 DNA helicase TIP 93.1 0.15 3.3E-06 54.0 5.4 55 176-233 37-95 (450)
445 PRK06936 type III secretion sy 93.0 0.36 7.8E-06 54.5 8.7 85 204-291 162-261 (439)
446 PTZ00494 tuzin-like protein; P 93.0 8.9 0.00019 42.7 18.6 168 175-352 368-544 (664)
447 PRK07594 type III secretion sy 93.0 0.46 1E-05 53.7 9.6 85 204-291 155-254 (433)
448 PF03308 ArgK: ArgK protein; 93.0 0.15 3.2E-06 52.4 5.1 62 186-250 14-76 (266)
449 KOG1051 Chaperone HSP104 and r 93.0 0.68 1.5E-05 56.6 11.4 121 178-308 562-686 (898)
450 TIGR03574 selen_PSTK L-seryl-t 93.0 0.16 3.5E-06 53.8 5.7 23 206-228 1-23 (249)
451 cd03243 ABC_MutS_homologs The 93.0 0.14 3E-06 52.3 5.1 22 205-226 30-51 (202)
452 PF13504 LRR_7: Leucine rich r 92.9 0.061 1.3E-06 29.8 1.2 15 580-594 2-16 (17)
453 PRK06731 flhF flagellar biosyn 92.8 0.49 1.1E-05 50.1 9.0 90 204-294 75-166 (270)
454 TIGR01351 adk adenylate kinase 92.8 0.15 3.2E-06 52.5 5.1 21 207-227 2-22 (210)
455 cd01134 V_A-ATPase_A V/A-type 92.8 0.45 9.7E-06 51.5 8.7 49 204-255 157-206 (369)
456 cd03244 ABCC_MRP_domain2 Domai 92.8 0.98 2.1E-05 46.9 11.4 23 205-227 31-53 (221)
457 KOG0473 Leucine-rich repeat pr 92.8 0.0059 1.3E-07 60.1 -4.9 85 552-637 38-122 (326)
458 cd03213 ABCG_EPDR ABCG transpo 92.8 0.61 1.3E-05 47.2 9.5 25 204-228 35-59 (194)
459 cd02024 NRK1 Nicotinamide ribo 92.8 0.067 1.4E-06 53.2 2.3 22 206-227 1-22 (187)
460 TIGR03740 galliderm_ABC gallid 92.8 0.77 1.7E-05 47.7 10.5 23 205-227 27-49 (223)
461 TIGR01040 V-ATPase_V1_B V-type 92.8 0.29 6.2E-06 55.1 7.5 87 205-291 142-256 (466)
462 PF03215 Rad17: Rad17 cell cyc 92.8 0.12 2.7E-06 60.1 4.8 59 179-240 20-78 (519)
463 PF07726 AAA_3: ATPase family 92.8 0.056 1.2E-06 49.1 1.6 22 207-228 2-23 (131)
464 smart00534 MUTSac ATPase domai 92.8 0.11 2.4E-06 52.1 3.9 118 206-328 1-128 (185)
465 cd03240 ABC_Rad50 The catalyti 92.8 0.48 1E-05 48.4 8.6 61 274-336 131-195 (204)
466 cd02023 UMPK Uridine monophosp 92.8 0.067 1.5E-06 54.5 2.4 22 206-227 1-22 (198)
467 cd01132 F1_ATPase_alpha F1 ATP 92.7 0.34 7.4E-06 50.9 7.5 84 205-291 70-170 (274)
468 PRK13947 shikimate kinase; Pro 92.7 0.085 1.8E-06 52.3 3.0 23 206-228 3-25 (171)
469 PRK08149 ATP synthase SpaL; Va 92.7 0.43 9.2E-06 53.9 8.7 85 204-291 151-250 (428)
470 cd03245 ABCC_bacteriocin_expor 92.7 0.85 1.8E-05 47.3 10.7 24 204-227 30-53 (220)
471 PRK10463 hydrogenase nickel in 92.7 0.34 7.3E-06 51.5 7.5 87 202-293 102-195 (290)
472 PRK10751 molybdopterin-guanine 92.7 0.11 2.5E-06 50.6 3.7 27 203-229 5-31 (173)
473 PF13481 AAA_25: AAA domain; P 92.6 0.45 9.8E-06 48.2 8.4 40 205-244 33-81 (193)
474 TIGR00150 HI0065_YjeE ATPase, 92.6 0.18 4E-06 46.7 4.8 41 185-228 6-46 (133)
475 TIGR02322 phosphon_PhnN phosph 92.6 0.087 1.9E-06 52.7 3.0 23 205-227 2-24 (179)
476 TIGR03575 selen_PSTK_euk L-ser 92.6 0.28 6.1E-06 53.6 7.0 23 207-229 2-24 (340)
477 KOG2170 ATPase of the AAA+ sup 92.6 0.32 7E-06 50.6 6.9 113 178-307 82-203 (344)
478 KOG4252 GTP-binding protein [S 92.6 0.3 6.6E-06 46.0 6.0 37 205-241 21-57 (246)
479 cd01121 Sms Sms (bacterial rad 92.6 0.38 8.2E-06 53.8 8.1 82 203-291 81-167 (372)
480 COG4088 Predicted nucleotide k 92.6 0.21 4.6E-06 48.7 5.2 25 205-229 2-26 (261)
481 KOG0652 26S proteasome regulat 92.6 1.8 3.9E-05 43.8 11.8 49 179-227 172-228 (424)
482 PRK13949 shikimate kinase; Pro 92.5 0.092 2E-06 51.7 2.9 23 206-228 3-25 (169)
483 COG0194 Gmk Guanylate kinase [ 92.5 0.14 3.1E-06 49.6 4.0 25 204-228 4-28 (191)
484 COG4181 Predicted ABC-type tra 92.5 1.6 3.5E-05 41.5 10.7 84 246-330 122-215 (228)
485 cd02020 CMPK Cytidine monophos 92.5 0.081 1.8E-06 50.9 2.5 23 206-228 1-23 (147)
486 COG1936 Predicted nucleotide k 92.5 0.094 2E-06 49.9 2.7 20 206-225 2-21 (180)
487 cd03251 ABCC_MsbA MsbA is an e 92.5 1.1 2.4E-05 47.0 11.3 23 205-227 29-51 (234)
488 TIGR03263 guanyl_kin guanylate 92.4 0.099 2.1E-06 52.4 3.1 23 205-227 2-24 (180)
489 TIGR02868 CydC thiol reductant 92.4 0.68 1.5E-05 55.5 10.8 24 204-227 361-384 (529)
490 COG2401 ABC-type ATPase fused 92.4 0.17 3.6E-06 54.8 4.8 155 179-333 372-579 (593)
491 COG1066 Sms Predicted ATP-depe 92.4 0.33 7.1E-06 53.0 7.0 82 204-293 93-179 (456)
492 PRK05022 anaerobic nitric oxid 92.4 0.56 1.2E-05 55.5 9.8 136 177-322 186-332 (509)
493 TIGR03498 FliI_clade3 flagella 92.4 0.46 1E-05 53.6 8.6 85 204-291 140-239 (418)
494 COG0003 ArsA Predicted ATPase 92.4 0.18 3.8E-06 54.7 5.1 49 204-253 2-50 (322)
495 COG2019 AdkA Archaeal adenylat 92.4 0.11 2.4E-06 48.8 3.1 25 204-228 4-28 (189)
496 PRK14269 phosphate ABC transpo 92.4 1.3 2.7E-05 47.0 11.6 23 205-227 29-51 (246)
497 PRK14264 phosphate ABC transpo 92.4 1.3 2.9E-05 48.4 12.1 24 204-227 71-94 (305)
498 PF01078 Mg_chelatase: Magnesi 92.4 0.22 4.8E-06 49.7 5.4 42 178-226 3-44 (206)
499 KOG3864 Uncharacterized conser 92.4 0.018 4E-07 55.9 -2.1 67 1020-1086 121-190 (221)
500 KOG0738 AAA+-type ATPase [Post 92.3 0.14 3E-06 55.0 4.0 31 204-234 245-275 (491)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-77 Score=714.25 Aligned_cols=601 Identities=30% Similarity=0.482 Sum_probs=467.2
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhhhccccCCCCc
Q 043647 26 NFARREGVISKLEKWKKTLLMIQAVFSDAEEKQLTDKAVKMWLDDLQDLAYDVEDILDEFATEALARKLKVEHHQSSSSN 105 (1096)
Q Consensus 26 ~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~~yd~ed~ld~~~~~~~~~~~~~~~~~~~~~~ 105 (1096)
++....|+++.+..|+++|..++.+++|++.++.....+..|...+++++|++||.++.|......++..+.-. ..
T Consensus 19 ~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~----~~ 94 (889)
T KOG4658|consen 19 ESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLS----TR 94 (889)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh----hh
Confidence 34455688889999999999999999999999888889999999999999999999999998877665432211 00
Q ss_pred ccccccccccccccCCCCccchhhhHHHHHHHHHHHHHHHHhhhhhccccccCCCccc--cccCCCCCCCCCCCCccccc
Q 043647 106 SKVQNLIIPACFTSLSPSSVKFNVGMGSKIRSISSRFEEICKQKVELGLQMNAGGVSI--AGWQRPTSTCLPTEPAVFGR 183 (1096)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vgr 183 (1096)
....+.. | ...+++..+..+..+.+++-.+.+.++.++.......... ......+..+...... ||.
T Consensus 95 ~~~~~~~---c-------~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~ 163 (889)
T KOG4658|consen 95 SVERQRL---C-------LCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGL 163 (889)
T ss_pred HHHHHHH---h-------hhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccH
Confidence 0111111 1 0134556667777777777777777777764432211111 0001112223333334 999
Q ss_pred hHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccc-cc-ccCcEEEEEecCccChHHHHHHHHHhccCC
Q 043647 184 DEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKA-VE-MFNLRSWVCVSDDFDILRITKSILESITFS 261 (1096)
Q Consensus 184 ~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 261 (1096)
+..++++.+.|.+++ ..+++|+||||+||||||+.++|+.. ++ +||.++||+||+.++...++++|+..++..
T Consensus 164 e~~~~kl~~~L~~d~-----~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~ 238 (889)
T KOG4658|consen 164 ETMLEKLWNRLMEDD-----VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLL 238 (889)
T ss_pred HHHHHHHHHHhccCC-----CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccC
Confidence 999999999998764 28999999999999999999999987 77 999999999999999999999999999875
Q ss_pred CCC--CCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchhhhhh-cCCcceeeCCC
Q 043647 262 PNS--LKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTDVALT-VGTAEYYNLKL 338 (1096)
Q Consensus 262 ~~~--~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~-~~~~~~~~l~~ 338 (1096)
+.. ..+.++++..+.+.|++|||+|||||||+. .+|+.+..++|...+||||++|||+.+|+.. +++...++++.
T Consensus 239 ~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~ 316 (889)
T KOG4658|consen 239 DEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVEC 316 (889)
T ss_pred CcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccc
Confidence 443 233478899999999999999999999998 7799999999999899999999999999998 77778999999
Q ss_pred CChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHHHHhccCCCHHHHHHHHhhhcccccc-----CC
Q 043647 339 LSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGGLLRCKQSDDEWDEILNSKIWYLSE-----ES 413 (1096)
Q Consensus 339 L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~-----~~ 413 (1096)
|+.+|||+||.+.||.... ...+.++++|++|+++|+|+|||++++|+.|+.+++.++|+.+.+...+.... .+
T Consensus 317 L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~ 395 (889)
T KOG4658|consen 317 LTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEE 395 (889)
T ss_pred cCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhh
Confidence 9999999999999986532 23455999999999999999999999999999999999999999987665222 46
Q ss_pred ChHHHHHHHHhcCchhhHHHhhhhcccCCCcccc--------ccccccccC--------------------------C--
Q 043647 414 NILPVLRLSYHHLPSHLKRCFAYCAIFPKDYEFE--------EMESIFQPS--------------------------S-- 457 (1096)
Q Consensus 414 ~i~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~~~--------~~e~~~~~~--------------------------~-- 457 (1096)
.+..++++||+.||++.|.||+|||+||+||+|+ ..|+|++.. .
T Consensus 396 ~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~ 475 (889)
T KOG4658|consen 396 SILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE 475 (889)
T ss_pred hhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc
Confidence 8899999999999999999999999999999998 235666441 1
Q ss_pred CCcceEEehhHHHHHHHHhhc-----cceeeeccc--cccccccccCCcceeeeeeecccCCcccccccccCcCceeecc
Q 043647 458 NNSFKFIMHDLVNDLAQWISG-----ETSFRLENE--MVTDNKSRRFRRARHSSYTCGFYDGKSKFEVFHEVEHLRTFLP 530 (1096)
Q Consensus 458 ~~~~~~~mhdlv~d~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~ 530 (1096)
+...+|+|||+|||+|.++++ ++...+... .........+..+|+++..+..... ...-...+.++||+.
T Consensus 476 ~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~---~~~~~~~~~L~tLll 552 (889)
T KOG4658|consen 476 GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH---IAGSSENPKLRTLLL 552 (889)
T ss_pred cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh---ccCCCCCCccceEEE
Confidence 234789999999999999999 443332221 1111123445678888887654322 122234557999988
Q ss_pred cchhhhhhhhccchhhhhhhhcCCCCcceEEEecccc-cccCCCCcCCCCccceeecccccccccccccccCCCCcEEec
Q 043647 531 VLSYEIRLLTRYITDVVLSNLLPKFTKLRVLSLKKYY-ITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLIL 609 (1096)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L 609 (1096)
..... ........+|..++.||||||++|. +..+|++|++|.|||||+|+++.|+.+|.++.+|+.|.+||+
T Consensus 553 ~~n~~-------~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 553 QRNSD-------WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNL 625 (889)
T ss_pred eecch-------hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecc
Confidence 76211 1234456679999999999999875 789999999999999999999999999999999999999999
Q ss_pred cCcccCcccCccccCCCCCceEEeccccccccCcccCCCCCCCCcCCceEe
Q 043647 610 RGCYRLKKLPSNLRNLINLRHLVVTYVDLIREMPLGIKELKCLQMLSNFIV 660 (1096)
Q Consensus 610 ~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~ 660 (1096)
..+..+..+|..+..|++||+|.+.... ...-...++.+.+|++|..+.+
T Consensus 626 ~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 626 EVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred ccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhhee
Confidence 9987777777766779999999997654 1211223455555555544433
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.8e-64 Score=641.06 Aligned_cols=674 Identities=22% Similarity=0.305 Sum_probs=415.8
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEe---cCc--------
Q 043647 176 TEPAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCV---SDD-------- 244 (1096)
Q Consensus 176 ~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~---~~~-------- 244 (1096)
+.+++|||++.++++..+|... ..++++|+||||||+||||||+++|+.... +|+..+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~---~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~~~~v~~~~~~~~~~~ 257 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLE---SEEVRMVGIWGSSGIGKTTIARALFSRLSR-QFQSSVFIDRAFISKSMEIYSSAN 257 (1153)
T ss_pred ccccccchHHHHHHHHHHHccc---cCceEEEEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEeeccccccchhhccccc
Confidence 3567999999999999888432 346899999999999999999999985332 7888877642 111
Q ss_pred ---cC-hHHHHHHHHHhccCCCC-CCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEc
Q 043647 245 ---FD-ILRITKSILESITFSPN-SLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTT 319 (1096)
Q Consensus 245 ---~~-~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 319 (1096)
++ ...++++++.++..... .... ...++++++++|+||||||||+. ..|+.+.....+.++||+|||||
T Consensus 258 ~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTT 331 (1153)
T PLN03210 258 PDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVIT 331 (1153)
T ss_pred ccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEe
Confidence 01 12344555555432211 1111 14577889999999999999876 78999888777778899999999
Q ss_pred CchhhhhhcCCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHHHHhccCCCHHHHH
Q 043647 320 CSTDVALTVGTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGGLLRCKQSDDEWD 399 (1096)
Q Consensus 320 R~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~ 399 (1096)
|+.+++..++...+|+++.++.++||+||+++||+... .++.+.+++++|+++|+|+|||++++|++|+++ +..+|+
T Consensus 332 rd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~ 408 (1153)
T PLN03210 332 KDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWM 408 (1153)
T ss_pred CcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHH
Confidence 99999988777889999999999999999999997643 345688999999999999999999999999976 789999
Q ss_pred HHHhhhccccccCCChHHHHHHHHhcCch-hhHHHhhhhcccCCCccccccc--------------------cccccCCC
Q 043647 400 EILNSKIWYLSEESNILPVLRLSYHHLPS-HLKRCFAYCAIFPKDYEFEEME--------------------SIFQPSSN 458 (1096)
Q Consensus 400 ~~~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~~f~~~a~fp~~~~~~~~e--------------------~~~~~~~~ 458 (1096)
.++++..... +..|.++|++||+.|++ ..|.||+++|+||.++.++.+. ++++..
T Consensus 409 ~~l~~L~~~~--~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-- 484 (1153)
T PLN03210 409 DMLPRLRNGL--DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-- 484 (1153)
T ss_pred HHHHHHHhCc--cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc--
Confidence 9998876533 35799999999999987 5999999999999998776332 344332
Q ss_pred CcceEEehhHHHHHHHHhhccceeeeccc--cccc-------cccccCCcceeeeeeecccCCcccccccccCcCceeec
Q 043647 459 NSFKFIMHDLVNDLAQWISGETSFRLENE--MVTD-------NKSRRFRRARHSSYTCGFYDGKSKFEVFHEVEHLRTFL 529 (1096)
Q Consensus 459 ~~~~~~mhdlv~d~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~ 529 (1096)
..++.|||++|+||+++++++....... .+.. ........++.+++.......
T Consensus 485 -~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~----------------- 546 (1153)
T PLN03210 485 -EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDE----------------- 546 (1153)
T ss_pred -CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccce-----------------
Confidence 3479999999999999998764110000 0000 000011222333222111100
Q ss_pred ccchhhhhhhhccchhhhhhhhcCCCCcceEEEeccccc-------ccCCCCcCCCC-ccceeecccccccccccccccC
Q 043647 530 PVLSYEIRLLTRYITDVVLSNLLPKFTKLRVLSLKKYYI-------TELPHSIGDLK-HLRYINLSETMIRCLPESICSL 601 (1096)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~-------~~lp~~i~~l~-~Lr~L~L~~~~i~~lp~~i~~L 601 (1096)
..+....|.++++|+.|.+..+.. ..+|..+..++ +||+|++.++.++.+|..+ .+
T Consensus 547 ---------------~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~ 610 (1153)
T PLN03210 547 ---------------LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RP 610 (1153)
T ss_pred ---------------eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-Cc
Confidence 011223345555555555543321 12444444442 3555666555555555554 34
Q ss_pred CCCcEEeccCcccCcccCccccCCCCCceEEeccccccccCcccCCCCCCCCcCCceEecccCCCCcccccccccccceE
Q 043647 602 CNLQFLILRGCYRLKKLPSNLRNLINLRHLVVTYVDLIREMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGEL 681 (1096)
Q Consensus 602 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l 681 (1096)
.+|+.|++++| .+..+|.++..+++|+.|+++++..+..+| .++.+++|++|
T Consensus 611 ~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L-------------------------- 662 (1153)
T PLN03210 611 ENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETL-------------------------- 662 (1153)
T ss_pred cCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEE--------------------------
Confidence 55556666553 455555555555566666555544333333 12222222222
Q ss_pred EEeecCCCCCCcchHHHHHHhhccCCCCCCCeEEEeee-CCCCCCcccCCccccceeEEeecCCCCCCCCCCCCCcCCcc
Q 043647 682 CISRLDYFDDSRNEALEKNVLDMLQPHRSLKELTVKCY-GGTVFPSWMGDPLFSNIVLLRLEDCEKCTSLPSLGLLGSLK 760 (1096)
Q Consensus 682 ~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~ 760 (1096)
++.++ ....+|..+.. +++|+.|++++|..++.+|...++++|+
T Consensus 663 ---------------------------------~L~~c~~L~~lp~si~~--L~~L~~L~L~~c~~L~~Lp~~i~l~sL~ 707 (1153)
T PLN03210 663 ---------------------------------KLSDCSSLVELPSSIQY--LNKLEDLDMSRCENLEILPTGINLKSLY 707 (1153)
T ss_pred ---------------------------------EecCCCCccccchhhhc--cCCCCEEeCCCCCCcCccCCcCCCCCCC
Confidence 11111 01112222211 3444444444444444444333444555
Q ss_pred eeecccccceeEecccccCCCCCCCCCCCceecccCCCcCcccccCccCCcccccccccEEEEecCCCcCccCCCCCCCc
Q 043647 761 NLTIKGMRRLKSIGFEIYGEGCSKPFQALETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLPNHLPIL 840 (1096)
Q Consensus 761 ~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L 840 (1096)
.|.+++|..++.++. ..++|+.|++.++. +. .+|..+
T Consensus 708 ~L~Lsgc~~L~~~p~--------------------------------------~~~nL~~L~L~~n~-i~-~lP~~~--- 744 (1153)
T PLN03210 708 RLNLSGCSRLKSFPD--------------------------------------ISTNISWLDLDETA-IE-EFPSNL--- 744 (1153)
T ss_pred EEeCCCCCCcccccc--------------------------------------ccCCcCeeecCCCc-cc-cccccc---
Confidence 555544433222110 01223333333221 11 222110
Q ss_pred cEEEEecccCccccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCe
Q 043647 841 EKLMIYECVQLVVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGC 920 (1096)
Q Consensus 841 ~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~ 920 (1096)
.+++|+.|.+.+|....... .+..+.......+++|+.|+|++|+.+..+|..+.++++|+.
T Consensus 745 ----------------~l~~L~~L~l~~~~~~~l~~--~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~ 806 (1153)
T PLN03210 745 ----------------RLENLDELILCEMKSEKLWE--RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEH 806 (1153)
T ss_pred ----------------cccccccccccccchhhccc--cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCE
Confidence 12222223222221110000 000000011223467888888888888888888888888888
Q ss_pred EEEecCCCcCcCCCCCCCCCCcCeEEEeCCCCCcccCCCCCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcc
Q 043647 921 IWIWKCENLKSLPEGLPNLNSLHNIYVWDCPSLVSFPEGGLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLK 1000 (1096)
Q Consensus 921 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~ 1000 (1096)
|++++|+.++.+|..+ ++++|+.|++++|+.+..+|. .+.+|+.|+++++ .++.+|. .+..+++|+
T Consensus 807 L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~n-~i~~iP~----------si~~l~~L~ 872 (1153)
T PLN03210 807 LEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNLSRT-GIEEVPW----------WIEKFSNLS 872 (1153)
T ss_pred EECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--cccccCEeECCCC-CCccChH----------HHhcCCCCC
Confidence 8888888888888765 688888888888888877764 4567777777763 5555553 566777777
Q ss_pred eEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccC
Q 043647 1001 ILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLS 1041 (1096)
Q Consensus 1001 ~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~ 1041 (1096)
.|++++|+.+..+|... ..+++|+.|++++|.+|+.++
T Consensus 873 ~L~L~~C~~L~~l~~~~---~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 873 FLDMNGCNNLQRVSLNI---SKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred EEECCCCCCcCccCccc---ccccCCCeeecCCCccccccc
Confidence 77777777777777643 456777777777777776554
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.3e-38 Score=348.68 Aligned_cols=259 Identities=36% Similarity=0.597 Sum_probs=211.3
Q ss_pred chHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHHHHhccCC
Q 043647 183 RDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSILESITFS 261 (1096)
Q Consensus 183 r~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 261 (1096)
|+.++++|.++|.... .+.++|+|+||||+||||||++++++...+ +|+.++||.++...+...+++.|+.+++..
T Consensus 1 re~~~~~l~~~L~~~~---~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS---NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp -HHHHHHHHHHHHTTT---TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHhhCCC---CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999997743 468999999999999999999999986666 899999999999999999999999999877
Q ss_pred CC---CCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchhhhhhcCC-cceeeCC
Q 043647 262 PN---SLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTDVALTVGT-AEYYNLK 337 (1096)
Q Consensus 262 ~~---~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~-~~~~~l~ 337 (1096)
.. ...+.++....+++.++++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...|+++
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 78 DSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp -STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred ccccccccccccccccchhhhccccceeeeeeeccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 43 4467788999999999999999999999877 6899998888877789999999999999877654 6789999
Q ss_pred CCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHHHHhccCCCHHHHHHHHhhhcccccc----CC
Q 043647 338 LLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGGLLRCKQSDDEWDEILNSKIWYLSE----ES 413 (1096)
Q Consensus 338 ~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~----~~ 413 (1096)
+|+.+||++||.+.++... ...++...+.+++|+++|+|+||||+++|++|+.+.+..+|+++++........ ..
T Consensus 156 ~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~ 234 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDR 234 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCH
T ss_pred ccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999997654 223456678999999999999999999999997766778999998775554432 35
Q ss_pred ChHHHHHHHHhcCchhhHHHhhhhcccCCCcccc
Q 043647 414 NILPVLRLSYHHLPSHLKRCFAYCAIFPKDYEFE 447 (1096)
Q Consensus 414 ~i~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~~~ 447 (1096)
.+..++.+||+.||+++|.||.|||+||+++.|+
T Consensus 235 ~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~ 268 (287)
T PF00931_consen 235 SVFSALELSYDSLPDELRRCFLYLSIFPEGVPIP 268 (287)
T ss_dssp HHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EE
T ss_pred cccccceechhcCCccHHHHHhhCcCCCCCceEC
Confidence 6899999999999999999999999999999877
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.9e-33 Score=360.87 Aligned_cols=509 Identities=17% Similarity=0.187 Sum_probs=334.7
Q ss_pred ccccCcCceeecccchhhhhhhhccchhhhhhhhcCCCCcceEEEeccccccc-CCCCcCCCCccceeeccccccc-ccc
Q 043647 518 VFHEVEHLRTFLPVLSYEIRLLTRYITDVVLSNLLPKFTKLRVLSLKKYYITE-LPHSIGDLKHLRYINLSETMIR-CLP 595 (1096)
Q Consensus 518 ~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~-lp~~i~~l~~Lr~L~L~~~~i~-~lp 595 (1096)
.+..+++|+.|.... +.....++...+..+++|++|+|++|.+.. +|. +.+++|++|+|++|.+. .+|
T Consensus 88 ~~~~l~~L~~L~Ls~--------n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p 157 (968)
T PLN00113 88 AIFRLPYIQTINLSN--------NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIP 157 (968)
T ss_pred HHhCCCCCCEEECCC--------CccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCC
Confidence 456677888876654 122234555667788899999999888763 453 56788999999998887 678
Q ss_pred cccccCCCCcEEeccCcccCcccCccccCCCCCceEEeccccccccCcccCCCCCCCCcCCceEecccCCCCcccccccc
Q 043647 596 ESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLVVTYVDLIREMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFK 675 (1096)
Q Consensus 596 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~ 675 (1096)
..++++.+|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|....... .+.....+.+++
T Consensus 158 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~p~~l~~l~ 236 (968)
T PLN00113 158 NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL-SGEIPYEIGGLT 236 (968)
T ss_pred hHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc-CCcCChhHhcCC
Confidence 8888999999999988765667888888999999999988886667788888888888885432221 111222233333
Q ss_pred cccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCCeEEEeeeCCC-CCCcccCCccccceeEEeecCCCCCCCCC-CC
Q 043647 676 LLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKELTVKCYGGT-VFPSWMGDPLFSNIVLLRLEDCEKCTSLP-SL 753 (1096)
Q Consensus 676 ~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l 753 (1096)
+|+ .+.+.. + .........+..+++|+.|+++++... .+|.++.. +++|+.|++++|.....+| .+
T Consensus 237 ~L~-~L~L~~--------n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 237 SLN-HLDLVY--------N-NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS--LQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred CCC-EEECcC--------c-eeccccChhHhCCCCCCEEECcCCeeeccCchhHhh--ccCcCEEECcCCeeccCCChhH
Confidence 333 222211 1 011123344566777888888777653 45656544 6788888888876655566 46
Q ss_pred CCcCCcceeecccccceeEecccccCCCCCCCCCCCceecccCCCcCcccccCccCCcccccccccEEEEecCCCcCccC
Q 043647 754 GLLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQALETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRL 833 (1096)
Q Consensus 754 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 833 (1096)
..+++|+.|++.++.....++..+ ..+++|+.|.+.++....... ...+.+++|+.|++++|. +.+.+
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~~~~------~~l~~L~~L~L~~n~l~~~~p-----~~l~~~~~L~~L~Ls~n~-l~~~~ 372 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIPVAL------TSLPRLQVLQLWSNKFSGEIP-----KNLGKHNNLTVLDLSTNN-LTGEI 372 (968)
T ss_pred cCCCCCcEEECCCCccCCcCChhH------hcCCCCCEEECcCCCCcCcCC-----hHHhCCCCCcEEECCCCe-eEeeC
Confidence 777888888887754333332222 337778888877654322211 114557778888887764 33355
Q ss_pred CC---CCCCccEEEEecccC---ccccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCccc
Q 043647 834 PN---HLPILEKLMIYECVQ---LVVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLES 907 (1096)
Q Consensus 834 p~---~l~~L~~L~l~~~~~---l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~ 907 (1096)
|. .+++|+.|.+.++.. +...+..+++|+.|++++|.... .....+..+++|+.|++++|.....
T Consensus 373 p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~---------~~p~~~~~l~~L~~L~Ls~N~l~~~ 443 (968)
T PLN00113 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG---------ELPSEFTKLPLVYFLDISNNNLQGR 443 (968)
T ss_pred ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee---------ECChhHhcCCCCCEEECcCCcccCc
Confidence 53 346677777776542 23345567788888887775322 1233456677888888888776556
Q ss_pred chhhcCCCCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCCCCcccCCC-CCCCCcCeEEEccCcCCcCCCCCCCCC
Q 043647 908 IAERFHNNTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCPSLVSFPEG-GLPNCSLSVTIGKCEKLKALPNLNAYE 986 (1096)
Q Consensus 908 l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~l~~l~~~~ 986 (1096)
++..+..+++|+.|++++|.....+|..+ ..++|+.|++++|.....+|.. .-.++|+.|++++|.-...+|.
T Consensus 444 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~----- 517 (968)
T PLN00113 444 INSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD----- 517 (968)
T ss_pred cChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCCh-----
Confidence 66666777888888888877666666544 4577888888876554444432 1236777888887755545543
Q ss_pred CCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCC
Q 043647 987 SPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFP 1066 (1096)
Q Consensus 987 ~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~ 1066 (1096)
.+.++++|++|+|++|.....+|..+ ..+++|+.|++++|+-...+| ..+.++++|+.|++++|+....+|
T Consensus 518 -----~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 518 -----ELSSCKKLVSLDLSHNQLSGQIPASF---SEMPVLSQLDLSQNQLSGEIP-KNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred -----HHcCccCCCEEECCCCcccccCChhH---hCcccCCEEECCCCcccccCC-hhHhcCcccCEEeccCCcceeeCC
Confidence 67778888888888885555566543 567888888888866555676 677788888888888877777788
Q ss_pred CCCccccccceeeccCcch
Q 043647 1067 EAGLPSSLLELYINDYPLM 1085 (1096)
Q Consensus 1067 ~~~l~~~L~~L~i~~c~~L 1085 (1096)
..+.+.++....+.++|.+
T Consensus 589 ~~~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 589 STGAFLAINASAVAGNIDL 607 (968)
T ss_pred CcchhcccChhhhcCCccc
Confidence 7666556666666666654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.5e-32 Score=350.66 Aligned_cols=483 Identities=18% Similarity=0.207 Sum_probs=353.9
Q ss_pred cccCcCceeecccchhhhhhhhccchhhhhhhhcCCCCcceEEEecccccc-cCCCCcCCCCccceeeccccccc-cccc
Q 043647 519 FHEVEHLRTFLPVLSYEIRLLTRYITDVVLSNLLPKFTKLRVLSLKKYYIT-ELPHSIGDLKHLRYINLSETMIR-CLPE 596 (1096)
Q Consensus 519 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~-~lp~~i~~l~~Lr~L~L~~~~i~-~lp~ 596 (1096)
+..+++||.+.... +......+ ...+++|++|++++|.+. .+|..++++.+|++|+|++|.+. .+|.
T Consensus 114 ~~~l~~L~~L~Ls~--------n~l~~~~p---~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 182 (968)
T PLN00113 114 FTTSSSLRYLNLSN--------NNFTGSIP---RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182 (968)
T ss_pred hccCCCCCEEECcC--------CccccccC---ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh
Confidence 34677888776544 11111112 135789999999999987 67889999999999999999976 7799
Q ss_pred ccccCCCCcEEeccCcccCcccCccccCCCCCceEEeccccccccCcccCCCCCCCCcCCceEecccCCCCccccccccc
Q 043647 597 SICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLVVTYVDLIREMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKL 676 (1096)
Q Consensus 597 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~ 676 (1096)
.++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|+...... .+.....+.++++
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~ 261 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL-TGPIPSSLGNLKN 261 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee-ccccChhHhCCCC
Confidence 999999999999999876678899999999999999999986667888899999999986543321 1112223344444
Q ss_pred ccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCCeEEEeeeCCC-CCCcccCCccccceeEEeecCCCCCCCCC-CCC
Q 043647 677 LRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKELTVKCYGGT-VFPSWMGDPLFSNIVLLRLEDCEKCTSLP-SLG 754 (1096)
Q Consensus 677 L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~ 754 (1096)
|+ .+.+.. + .........+..+++|+.|++++|... .+|.++.. +++|+.|++++|.....+| .++
T Consensus 262 L~-~L~L~~--------n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~--l~~L~~L~l~~n~~~~~~~~~~~ 329 (968)
T PLN00113 262 LQ-YLFLYQ--------N-KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ--LQNLEILHLFSNNFTGKIPVALT 329 (968)
T ss_pred CC-EEECcC--------C-eeeccCchhHhhccCcCEEECcCCeeccCCChhHcC--CCCCcEEECCCCccCCcCChhHh
Confidence 43 232221 1 011122334566789999999988765 57777765 8999999999998776666 588
Q ss_pred CcCCcceeecccccceeEecccccCCCCCCCCCCCceecccCCCcCcccccCccCCcccccccccEEEEecCCCcCccCC
Q 043647 755 LLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQALETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLP 834 (1096)
Q Consensus 755 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p 834 (1096)
.+++|+.|+++++.....++..+ ..+++|+.|+++++....... .....+++|+.|++.+|+.. +.+|
T Consensus 330 ~l~~L~~L~L~~n~l~~~~p~~l------~~~~~L~~L~Ls~n~l~~~~p-----~~~~~~~~L~~L~l~~n~l~-~~~p 397 (968)
T PLN00113 330 SLPRLQVLQLWSNKFSGEIPKNL------GKHNNLTVLDLSTNNLTGEIP-----EGLCSSGNLFKLILFSNSLE-GEIP 397 (968)
T ss_pred cCCCCCEEECcCCCCcCcCChHH------hCCCCCcEEECCCCeeEeeCC-----hhHhCcCCCCEEECcCCEec-ccCC
Confidence 99999999999875433443322 347899999998764322211 11455789999999997543 3666
Q ss_pred C---CCCCccEEEEecccC---ccccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccc
Q 043647 835 N---HLPILEKLMIYECVQ---LVVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESI 908 (1096)
Q Consensus 835 ~---~l~~L~~L~l~~~~~---l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l 908 (1096)
. .+++|+.|.+.+|.. ....+..+++|+.|++++|.... .....+..+++|+.|++++|.....+
T Consensus 398 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~---------~~~~~~~~l~~L~~L~L~~n~~~~~~ 468 (968)
T PLN00113 398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG---------RINSRKWDMPSLQMLSLARNKFFGGL 468 (968)
T ss_pred HHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccC---------ccChhhccCCCCcEEECcCceeeeec
Confidence 4 578999999988753 33456779999999999986433 12334457899999999999877777
Q ss_pred hhhcCCCCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCCCCcccCCC-CCCCCcCeEEEccCcCCcCCCCCCCCCC
Q 043647 909 AERFHNNTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCPSLVSFPEG-GLPNCSLSVTIGKCEKLKALPNLNAYES 987 (1096)
Q Consensus 909 ~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~l~~l~~~~~ 987 (1096)
|..+ ..++|+.|++++|.....+|..+.++++|+.|++++|.....+|.. .-.++|+.|++++|.-...+|.
T Consensus 469 p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~------ 541 (968)
T PLN00113 469 PDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA------ 541 (968)
T ss_pred Cccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCCh------
Confidence 7654 4689999999998877788988999999999999997766666643 2347899999999876656553
Q ss_pred CCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCC
Q 043647 988 PIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKL 1062 (1096)
Q Consensus 988 ~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l 1062 (1096)
.+.++++|+.|++++|.....+|... ..+++|+.|++++|+-...+|.. ..+.++....+.+++.+
T Consensus 542 ----~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~l~ls~N~l~~~~p~~--~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 542 ----SFSEMPVLSQLDLSQNQLSGEIPKNL---GNVESLVQVNISHNHLHGSLPST--GAFLAINASAVAGNIDL 607 (968)
T ss_pred ----hHhCcccCCEEECCCCcccccCChhH---hcCcccCEEeccCCcceeeCCCc--chhcccChhhhcCCccc
Confidence 78899999999999996666888754 67899999999998876778732 23344444445554433
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.2e-23 Score=269.17 Aligned_cols=364 Identities=21% Similarity=0.298 Sum_probs=257.0
Q ss_pred CCCcCCCCccceeeccccc------cc-ccccccccCC-CCcEEeccCcccCcccCccccCCCCCceEEeccccccccCc
Q 043647 572 PHSIGDLKHLRYINLSETM------IR-CLPESICSLC-NLQFLILRGCYRLKKLPSNLRNLINLRHLVVTYVDLIREMP 643 (1096)
Q Consensus 572 p~~i~~l~~Lr~L~L~~~~------i~-~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p 643 (1096)
+..|.++.+|++|.+.++. +. .+|..+..++ +|+.|++.++ .++.+|..+ ...+|++|++.++. +..+|
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSK-LEKLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCcc-ccccc
Confidence 4678899999999997653 22 5788887775 5999999994 789999877 57899999999887 66666
Q ss_pred ccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCCeEEEeeeC-CC
Q 043647 644 LGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKELTVKCYG-GT 722 (1096)
Q Consensus 644 ~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~ 722 (1096)
.++..+++|+.|+ ++++. ..
T Consensus 628 ~~~~~l~~Lk~L~-----------------------------------------------------------Ls~~~~l~ 648 (1153)
T PLN03210 628 DGVHSLTGLRNID-----------------------------------------------------------LRGSKNLK 648 (1153)
T ss_pred cccccCCCCCEEE-----------------------------------------------------------CCCCCCcC
Confidence 6555554444442 22111 11
Q ss_pred CCCcccCCccccceeEEeecCCCCCCCCC-CCCCcCCcceeecccccceeEecccccCCCCCCCCCCCceecccCCCcCc
Q 043647 723 VFPSWMGDPLFSNIVLLRLEDCEKCTSLP-SLGLLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQALETLCFEDLPEWE 801 (1096)
Q Consensus 723 ~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 801 (1096)
.+|. +. .+++|+.|+|++|..+..+| .++.+++|+.|++++|..++.++
T Consensus 649 ~ip~-ls--~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp--------------------------- 698 (1153)
T PLN03210 649 EIPD-LS--MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP--------------------------- 698 (1153)
T ss_pred cCCc-cc--cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccC---------------------------
Confidence 1221 11 15666666666666655555 45556666666665554433322
Q ss_pred ccccCccCCcccccccccEEEEecCCCcCccCCCCCCCccEEEEecccCccccCCCCCCcceEEeccCCCccccCCCCcc
Q 043647 802 HWNSFKENDHVERFACLRQLSIVKCPRLCGRLPNHLPILEKLMIYECVQLVVSFSSLPLLCKLEIDRCKGVACRSPADLM 881 (1096)
Q Consensus 802 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 881 (1096)
. ...+++|+.|++++|..+. .+|...+ +|+.|++++|....+
T Consensus 699 ---~------~i~l~sL~~L~Lsgc~~L~-~~p~~~~---------------------nL~~L~L~~n~i~~l------- 740 (1153)
T PLN03210 699 ---T------GINLKSLYRLNLSGCSRLK-SFPDIST---------------------NISWLDLDETAIEEF------- 740 (1153)
T ss_pred ---C------cCCCCCCCEEeCCCCCCcc-ccccccC---------------------CcCeeecCCCccccc-------
Confidence 1 1135677788888887665 4554333 455555555532211
Q ss_pred cccCCCCCCCCCccEEEEccCCCccc------c-hhhcCCCCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCCCCc
Q 043647 882 SINSDSFKYFRALQQLEILDCPKLES------I-AERFHNNTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCPSLV 954 (1096)
Q Consensus 882 ~~~~~~l~~l~~L~~L~L~~~~~l~~------l-~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~ 954 (1096)
+ ....+++|.+|.+.+|..... + +.....+++|+.|++++|+.+..+|..+.++++|+.|+|++|+.++
T Consensus 741 --P--~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 741 --P--SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE 816 (1153)
T ss_pred --c--ccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC
Confidence 1 112467888888887642211 1 1122346799999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccC
Q 043647 955 SFPEGGLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRF 1034 (1096)
Q Consensus 955 ~l~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c 1034 (1096)
.+|....+++|+.|++++|.++..+|. ..++|+.|++++| .++.+|.+. ..+++|+.|++++|
T Consensus 817 ~LP~~~~L~sL~~L~Ls~c~~L~~~p~-------------~~~nL~~L~Ls~n-~i~~iP~si---~~l~~L~~L~L~~C 879 (1153)
T PLN03210 817 TLPTGINLESLESLDLSGCSRLRTFPD-------------ISTNISDLNLSRT-GIEEVPWWI---EKFSNLSFLDMNGC 879 (1153)
T ss_pred eeCCCCCccccCEEECCCCCccccccc-------------cccccCEeECCCC-CCccChHHH---hcCCCCCEEECCCC
Confidence 999876679999999999999988763 2468999999998 899999864 67899999999999
Q ss_pred CCCcccCcCCCCCCCCcCeEeeccCCCCCCCCCCCccc--------------cccceeeccCcchhh
Q 043647 1035 PKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFPEAGLPS--------------SLLELYINDYPLMTK 1087 (1096)
Q Consensus 1035 ~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~l~~--------------~L~~L~i~~c~~L~~ 1087 (1096)
++++.+| ..+..+++|+.|++++|+.++.++-.+.|. +...+.+.+|.+|..
T Consensus 880 ~~L~~l~-~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 880 NNLQRVS-LNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred CCcCccC-cccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 9999998 567889999999999999998776433332 224456778877753
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=6.1e-25 Score=234.87 Aligned_cols=385 Identities=19% Similarity=0.225 Sum_probs=222.0
Q ss_pred ceEEEecccccccCC-CCcCC-C-Cccceeeccccccccc-ccccccCCCCcEEeccCcccCcccCccccCCCCCceEEe
Q 043647 558 LRVLSLKKYYITELP-HSIGD-L-KHLRYINLSETMIRCL-PESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLVV 633 (1096)
Q Consensus 558 Lr~L~L~~~~~~~lp-~~i~~-l-~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l 633 (1096)
-+.||+++..+..+. ..+.. + ..-+.|++++|.+..+ +..|.+|+||+.+++..| .+..+|.......+|++|+|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDL 132 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEee
Confidence 345666666665441 11111 1 2345577777777765 556777777777777773 67777776666666777777
Q ss_pred ccccccccCc-ccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCC
Q 043647 634 TYVDLIREMP-LGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLK 712 (1096)
Q Consensus 634 ~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 712 (1096)
.+|. +..+- ..+..+..|++|+.... .+. ......+..-.+++
T Consensus 133 ~~N~-I~sv~se~L~~l~alrslDLSrN------~is-----------------------------~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 133 RHNL-ISSVTSEELSALPALRSLDLSRN------LIS-----------------------------EIPKPSFPAKVNIK 176 (873)
T ss_pred eccc-cccccHHHHHhHhhhhhhhhhhc------hhh-----------------------------cccCCCCCCCCCce
Confidence 7765 33332 23444445554432110 000 00111222335778
Q ss_pred eEEEeeeCCCCCCcccCCccccceeEEeecCCCCCCCCC--CCCCcCCcceeecccccceeEecccccCCCCCCCCCCCc
Q 043647 713 ELTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCTSLP--SLGLLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQALE 790 (1096)
Q Consensus 713 ~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~ 790 (1096)
+|++++|.++.+....++ .+.+|..|.|++|. ++.+| .+.+||.|+.|+|..+ .++.+
T Consensus 177 ~L~La~N~It~l~~~~F~-~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN-~iriv----------------- 236 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFD-SLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRN-RIRIV----------------- 236 (873)
T ss_pred EEeecccccccccccccc-ccchheeeecccCc-ccccCHHHhhhcchhhhhhcccc-ceeee-----------------
Confidence 888888877766544333 26677788887774 45555 5667778887777642 33322
Q ss_pred eecccCCCcCcccccCccCCcccccccccEEEEecCCCcCccCCCCCCCccEEEEecccCccccCCCCCCcceEEeccCC
Q 043647 791 TLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLPNHLPILEKLMIYECVQLVVSFSSLPLLCKLEIDRCK 870 (1096)
Q Consensus 791 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~ 870 (1096)
+|.. +..+++|+.|.+.... +. .+. .+.|..+..+++|++..|.
T Consensus 237 -----------e~lt------FqgL~Sl~nlklqrN~-I~-kL~-----------------DG~Fy~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 237 -----------EGLT------FQGLPSLQNLKLQRND-IS-KLD-----------------DGAFYGLEKMEHLNLETNR 280 (873)
T ss_pred -----------hhhh------hcCchhhhhhhhhhcC-cc-ccc-----------------Ccceeeecccceeecccch
Confidence 1111 2234444444443321 11 000 1235556666777776664
Q ss_pred CccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCCC-CCCCCCCcCeEEEeC
Q 043647 871 GVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLPE-GLPNLNSLHNIYVWD 949 (1096)
Q Consensus 871 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~ 949 (1096)
+......++.++++|+.|++++|..-..-+..+..+++|+.|++++ +.++.+++ .|..|..|++|+|++
T Consensus 281 ---------l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 281 ---------LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSH 350 (873)
T ss_pred ---------hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccc-cccccCChhHHHHHHHhhhhcccc
Confidence 2333455666777888888888763332355667788888888887 46666653 466778888888887
Q ss_pred CCCCcccCCCCCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEE
Q 043647 950 CPSLVSFPEGGLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTEL 1029 (1096)
Q Consensus 950 c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L 1029 (1096)
+.+..+.++ .|..+++|++|++++|.--..+.+...+|..+++|+.|
T Consensus 351 -Nsi~~l~e~--------------------------------af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 351 -NSIDHLAEG--------------------------------AFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred -cchHHHHhh--------------------------------HHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 556665542 45566666666666663322333333345556677777
Q ss_pred EeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCCCCCc-cccccceeec
Q 043647 1030 VIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFPEAGL-PSSLLELYIN 1080 (1096)
Q Consensus 1030 ~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~l-~~~L~~L~i~ 1080 (1096)
.+.+ |+|++||...|.+|++|+.|++.+ +.|.++...++ +-.|++|.+.
T Consensus 398 ~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 398 RLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred eecC-ceeeecchhhhccCcccceecCCC-Ccceeecccccccchhhhhhhc
Confidence 7776 667777666677777777777766 56666665555 3356666543
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=3e-26 Score=234.46 Aligned_cols=460 Identities=22% Similarity=0.244 Sum_probs=278.1
Q ss_pred hhcCCCCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCc
Q 043647 550 NLLPKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLR 629 (1096)
Q Consensus 550 ~~~~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~ 629 (1096)
..+.++..|.||++.+|.+.++|.+++.+..++.|+.++|.+..+|+.++.+.+|..|+.++| .+.++|++++.+..|.
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLE 140 (565)
T ss_pred HhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhhhh
Confidence 345678888888888888888888888888888888888888888888888888888888884 7888888888888888
Q ss_pred eEEeccccccccCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCC
Q 043647 630 HLVVTYVDLIREMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHR 709 (1096)
Q Consensus 630 ~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~ 709 (1096)
.|+..+|+ +..+|.+++.+.+|..|..... .++.+ .+..-.++
T Consensus 141 dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n------~l~~l------------------------------~~~~i~m~ 183 (565)
T KOG0472|consen 141 DLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN------KLKAL------------------------------PENHIAMK 183 (565)
T ss_pred hhhccccc-cccCchHHHHHHHHHHhhcccc------chhhC------------------------------CHHHHHHH
Confidence 88888777 7888888887777766532111 11110 01111145
Q ss_pred CCCeEEEeeeCCCCCCcccCCccccceeEEeecCCCCCCCCCCCCCcCCcceeecccccceeEecccccCCCCCCCCCCC
Q 043647 710 SLKELTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCTSLPSLGLLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQAL 789 (1096)
Q Consensus 710 ~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L 789 (1096)
.|++|+...|....+|..++. +.+|.-|+|..| .+..+|.++.+..|++|.+.. +.++.++.+.. ..++++
T Consensus 184 ~L~~ld~~~N~L~tlP~~lg~--l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~-N~i~~lpae~~-----~~L~~l 254 (565)
T KOG0472|consen 184 RLKHLDCNSNLLETLPPELGG--LESLELLYLRRN-KIRFLPEFPGCSLLKELHVGE-NQIEMLPAEHL-----KHLNSL 254 (565)
T ss_pred HHHhcccchhhhhcCChhhcc--hhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcc-cHHHhhHHHHh-----cccccc
Confidence 667777777777888887766 778888888877 356778888888888888864 45665555443 236777
Q ss_pred ceecccCCCcCcccccCccCCcccccccccEEEEecCCCcCccCCCCCCCc--cEEEEecccCc--cccCCCCC---Ccc
Q 043647 790 ETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLPNHLPIL--EKLMIYECVQL--VVSFSSLP---LLC 862 (1096)
Q Consensus 790 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L--~~L~l~~~~~l--~~~~~~l~---~L~ 862 (1096)
..|++.+.. +++.+ +...-+.+|++|++++. .++ .+|..+.+| +.|.+.+++-- ...+-..+ -|+
T Consensus 255 ~vLDLRdNk-lke~P-----de~clLrsL~rLDlSNN-~is-~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLK 326 (565)
T KOG0472|consen 255 LVLDLRDNK-LKEVP-----DEICLLRSLERLDLSNN-DIS-SLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLK 326 (565)
T ss_pred eeeeccccc-cccCc-----hHHHHhhhhhhhcccCC-ccc-cCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHH
Confidence 777776532 23222 12445677888888874 444 666655543 44444554321 00000000 011
Q ss_pred eEEe-ccCCCccccCCCCcc-----cccCCCCCCCCCccEEEEccCCCcccchhhcCCC---CCcCeEEEecCCCcCcCC
Q 043647 863 KLEI-DRCKGVACRSPADLM-----SINSDSFKYFRALQQLEILDCPKLESIAERFHNN---TSLGCIWIWKCENLKSLP 933 (1096)
Q Consensus 863 ~L~l-~~~~~~~~~~~~~~~-----~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l---~~L~~L~l~~c~~l~~lp 933 (1096)
+|.= ..|..+.......-. ..........-+.+.|++++- .++.+|.....- .-....+++. +.+..+|
T Consensus 327 yLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~Vnfsk-NqL~elP 404 (565)
T KOG0472|consen 327 YLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSK-NQLCELP 404 (565)
T ss_pred HHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHhhhcceEEEeccc-chHhhhh
Confidence 1110 001111000000000 001111122335777777774 466666543222 2255667776 5677777
Q ss_pred CCCCCCCCcCeEEEeCCCCCcccCCC-CCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccc
Q 043647 934 EGLPNLNSLHNIYVWDCPSLVSFPEG-GLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVS 1012 (1096)
Q Consensus 934 ~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~ 1012 (1096)
..+..+..+.+.-+...+.+..+|.. ...++|.-|++++ +-+.++|. .+..+..|+.|+|+.| ....
T Consensus 405 k~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~----------e~~~lv~Lq~LnlS~N-rFr~ 472 (565)
T KOG0472|consen 405 KRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPE----------EMGSLVRLQTLNLSFN-RFRM 472 (565)
T ss_pred hhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcch----------hhhhhhhhheeccccc-cccc
Confidence 77666666655544443444443321 1125555566655 33444442 5666777777777777 6666
Q ss_pred cccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCCC-CCccccccceeeccCc
Q 043647 1013 FPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFPE-AGLPSSLLELYINDYP 1083 (1096)
Q Consensus 1013 l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~-~~l~~~L~~L~i~~c~ 1083 (1096)
+|... ..+..|+.+-.++ +.+..++.+++.++.+|..|++.+ +.++++|+ .|-..+|++|+++|+|
T Consensus 473 lP~~~---y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 473 LPECL---YELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred chHHH---hhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 66532 2334455554444 667777766677777777777766 66777776 3456677777777776
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=9.4e-25 Score=234.48 Aligned_cols=174 Identities=20% Similarity=0.302 Sum_probs=114.6
Q ss_pred CCcceEEEecccccc--cCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceEE
Q 043647 555 FTKLRVLSLKKYYIT--ELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLV 632 (1096)
Q Consensus 555 ~~~Lr~L~L~~~~~~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 632 (1096)
++..|-.|+++|.++ .+|.++..+..++.|.|..+.+..+|+.++.|.+|++|.+++| ++..+.-.++.|+.||.+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHHh
Confidence 445566677777765 5677777777777777777777777777777777777777774 5666666677777777777
Q ss_pred eccccc-cccCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCC
Q 043647 633 VTYVDL-IREMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSL 711 (1096)
Q Consensus 633 l~~~~~-~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L 711 (1096)
+++|+. -..+|..|-+|..|.+|+.... +| ..+...+...+++
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShN---------------qL---------------------~EvP~~LE~AKn~ 128 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHN---------------QL---------------------REVPTNLEYAKNS 128 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchh---------------hh---------------------hhcchhhhhhcCc
Confidence 776652 2346666666666665542111 00 0223334445667
Q ss_pred CeEEEeeeCCCCCCcccCCccccceeEEeecCCCCCCCCC-CCCCcCCcceeecccc
Q 043647 712 KELTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCTSLP-SLGLLGSLKNLTIKGM 767 (1096)
Q Consensus 712 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~ 767 (1096)
-.|+++.|.+.++|..+.- .++.|-.|+|++|. +..+| ....|.+|+.|.|+++
T Consensus 129 iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 129 IVLNLSYNNIETIPNSLFI-NLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred EEEEcccCccccCCchHHH-hhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCC
Confidence 7788888888888876543 36777788888874 44555 4677788888888764
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=7.4e-24 Score=239.46 Aligned_cols=103 Identities=36% Similarity=0.542 Sum_probs=92.1
Q ss_pred cCCCCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceE
Q 043647 552 LPKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHL 631 (1096)
Q Consensus 552 ~~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L 631 (1096)
..+.-+|++||+++|.+..+|..++.+.+|+.|+++.|.|.++|.+++++.+|++|+|.+ +.+..+|.++..+++|++|
T Consensus 41 ~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~L 119 (1081)
T KOG0618|consen 41 VEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYL 119 (1081)
T ss_pred hhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhccccc
Confidence 334445999999999999999999999999999999999999999999999999999998 5899999999999999999
Q ss_pred EeccccccccCcccCCCCCCCCcCC
Q 043647 632 VVTYVDLIREMPLGIKELKCLQMLS 656 (1096)
Q Consensus 632 ~l~~~~~~~~~p~~i~~L~~L~~L~ 656 (1096)
++++|. ...+|.-+..++.+..+.
T Consensus 120 dlS~N~-f~~~Pl~i~~lt~~~~~~ 143 (1081)
T KOG0618|consen 120 DLSFNH-FGPIPLVIEVLTAEEELA 143 (1081)
T ss_pred ccchhc-cCCCchhHHhhhHHHHHh
Confidence 999998 778888777776666553
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=4.5e-24 Score=229.31 Aligned_cols=365 Identities=19% Similarity=0.248 Sum_probs=204.4
Q ss_pred CCCCccceeeccccccc--ccccccccCCCCcEEeccCcccCcccCccccCCCCCceEEeccccccccCcccCCCCCCCC
Q 043647 576 GDLKHLRYINLSETMIR--CLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLVVTYVDLIREMPLGIKELKCLQ 653 (1096)
Q Consensus 576 ~~l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 653 (1096)
+-|+-.|-.|+++|.++ .+|.++..+..++.|.|.. +.+..+|..++.|.+|+||.+++|+ +..+.-.+..|+.|+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-TKLEQVPEELSRLQKLEHLSMAHNQ-LISVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEech-hhhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhhccchhhH
Confidence 45677888999999988 7899999999999999998 6899999999999999999999998 555544455555555
Q ss_pred cCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCCeEEEeeeCCCCCCcccCCccc
Q 043647 654 MLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKELTVKCYGGTVFPSWMGDPLF 733 (1096)
Q Consensus 654 ~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~ 733 (1096)
.+..-.. +|+ ...+...+-.+..|..|+++.|.....|..+.. -
T Consensus 82 sv~~R~N---------------~LK-------------------nsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~--A 125 (1255)
T KOG0444|consen 82 SVIVRDN---------------NLK-------------------NSGIPTDIFRLKDLTILDLSHNQLREVPTNLEY--A 125 (1255)
T ss_pred HHhhhcc---------------ccc-------------------cCCCCchhcccccceeeecchhhhhhcchhhhh--h
Confidence 4421000 000 001122223334455555555555555544432 3
Q ss_pred cceeEEeecCCCCCCCCC--CCCCcCCcceeecccccceeEecccccCCCCCCCCCCCceecccCCCcCcccccCccCCc
Q 043647 734 SNIVLLRLEDCEKCTSLP--SLGLLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQALETLCFEDLPEWEHWNSFKENDH 811 (1096)
Q Consensus 734 ~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 811 (1096)
+++-.|+|++|. +..+| .+.+|..|-.|+|+++ .++.++..
T Consensus 126 Kn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ----------------------------------- 168 (1255)
T KOG0444|consen 126 KNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ----------------------------------- 168 (1255)
T ss_pred cCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHH-----------------------------------
Confidence 455555555542 23333 2334444444444432 22222211
Q ss_pred ccccccccEEEEecCCCcCc---cCCCCCCCccEEEEecccC----ccccCCCCCCcceEEeccCCCccccCCCCccccc
Q 043647 812 VERFACLRQLSIVKCPRLCG---RLPNHLPILEKLMIYECVQ----LVVSFSSLPLLCKLEIDRCKGVACRSPADLMSIN 884 (1096)
Q Consensus 812 ~~~~~~L~~L~l~~c~~l~~---~~p~~l~~L~~L~l~~~~~----l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 884 (1096)
...+.+|++|.+++.|-... .+| ++.+|+.|++++... +...+..+.+|..++++.|.... -
T Consensus 169 ~RRL~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~----------v 237 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI----------V 237 (1255)
T ss_pred HHHHhhhhhhhcCCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc----------c
Confidence 22344555555555442210 111 122333333333221 11123334444444444443221 1
Q ss_pred CCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCCCCcccCCCCCCCC
Q 043647 885 SDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCPSLVSFPEGGLPNC 964 (1096)
Q Consensus 885 ~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 964 (1096)
...+-.+++|+.|+|++|. ++.+......+.+|++|+++. +.++.+|..+..|+.|+.|++.+ +
T Consensus 238 Pecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~-N------------- 301 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANN-N------------- 301 (1255)
T ss_pred hHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhcc-C-------------
Confidence 1222333444444444443 333333333344444444444 34444444444444444444433 1
Q ss_pred cCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCC
Q 043647 965 SLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNG 1044 (1096)
Q Consensus 965 L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~ 1044 (1096)
+++. ..++.++++|.+|+.+..++| .++-.|++. ..+..|+.|.++. |.|-.|| ++
T Consensus 302 ----------kL~F--------eGiPSGIGKL~~Levf~aanN-~LElVPEgl---cRC~kL~kL~L~~-NrLiTLP-ea 357 (1255)
T KOG0444|consen 302 ----------KLTF--------EGIPSGIGKLIQLEVFHAANN-KLELVPEGL---CRCVKLQKLKLDH-NRLITLP-EA 357 (1255)
T ss_pred ----------cccc--------cCCccchhhhhhhHHHHhhcc-ccccCchhh---hhhHHHHHhcccc-cceeech-hh
Confidence 2221 122348899999999999998 889899864 6788899998877 8888898 78
Q ss_pred CCCCCCcCeEeeccCCCCCCCC
Q 043647 1045 FRNLAFLEYLQIRDCPKLTSFP 1066 (1096)
Q Consensus 1045 l~~l~~L~~L~l~~c~~l~~l~ 1066 (1096)
+.-|+-|+.|+++.+|++.--|
T Consensus 358 IHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 358 IHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhcCCcceeeccCCcCccCCC
Confidence 8889999999999988876544
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=1.9e-24 Score=221.26 Aligned_cols=202 Identities=26% Similarity=0.305 Sum_probs=158.2
Q ss_pred hhhhcCCCCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCC
Q 043647 548 LSNLLPKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLIN 627 (1096)
Q Consensus 548 ~~~~~~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~ 627 (1096)
++..+..+..|+.|++++|.+..+|++++.+..|..|+..+|++.++|+++.++.+|..|++.+| .++.+|+..-+++.
T Consensus 106 lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~ 184 (565)
T KOG0472|consen 106 LPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKR 184 (565)
T ss_pred ccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHH
Confidence 44455677888899999999999999999999999999999999999999999999999999994 78888888777999
Q ss_pred CceEEeccccccccCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCC
Q 043647 628 LRHLVVTYVDLIREMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQP 707 (1096)
Q Consensus 628 L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~ 707 (1096)
|++|+...|- ++.+|++++.+.+|.-|..-.........+..+..|+.+. .+.+..+....+.+..
T Consensus 185 L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh-------------~g~N~i~~lpae~~~~ 250 (565)
T KOG0472|consen 185 LKHLDCNSNL-LETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELH-------------VGENQIEMLPAEHLKH 250 (565)
T ss_pred HHhcccchhh-hhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHH-------------hcccHHHhhHHHHhcc
Confidence 9999988877 8889999999998887754332222112233333333332 2334445555666778
Q ss_pred CCCCCeEEEeeeCCCCCCcccCCccccceeEEeecCCCCCCCCC-CCCCcCCcceeeccccc
Q 043647 708 HRSLKELTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCTSLP-SLGLLGSLKNLTIKGMR 768 (1096)
Q Consensus 708 ~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 768 (1096)
++++..|++..|....+|..+.- +.+|..|++++|. +..+| .+|++ +|+.|-+.|++
T Consensus 251 L~~l~vLDLRdNklke~Pde~cl--LrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 251 LNSLLVLDLRDNKLKEVPDEICL--LRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cccceeeeccccccccCchHHHH--hhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc
Confidence 89999999999999999988765 7899999999984 56666 79999 99999999864
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=3.3e-22 Score=214.18 Aligned_cols=170 Identities=19% Similarity=0.139 Sum_probs=90.6
Q ss_pred eEEEecccccccC-CCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccC-ccccCCCCCceEEeccc
Q 043647 559 RVLSLKKYYITEL-PHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLP-SNLRNLINLRHLVVTYV 636 (1096)
Q Consensus 559 r~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~ 636 (1096)
+.||+++|.+.++ +..|.++++|+.+++.+|.++.+|....-..||+.|+|.+| .+.++. +.+..++.||.|||+.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhhc
Confidence 3455555555544 34445555555555555555555555555555555555553 333332 22444555555555555
Q ss_pred cccccCccc-CCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCCeEE
Q 043647 637 DLIREMPLG-IKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKELT 715 (1096)
Q Consensus 637 ~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 715 (1096)
. +..+|.. +..-.++++|...... +. ......+..+.+|-.|.
T Consensus 160 ~-is~i~~~sfp~~~ni~~L~La~N~------It-----------------------------~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 160 L-ISEIPKPSFPAKVNIKKLNLASNR------IT-----------------------------TLETGHFDSLNSLLTLK 203 (873)
T ss_pred h-hhcccCCCCCCCCCceEEeecccc------cc-----------------------------ccccccccccchheeee
Confidence 4 4444321 2222233333210000 00 00111223345677788
Q ss_pred EeeeCCCCCCcccCCccccceeEEeecCCCCCCC--CCCCCCcCCcceeecccc
Q 043647 716 VKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCTS--LPSLGLLGSLKNLTIKGM 767 (1096)
Q Consensus 716 l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~--l~~l~~l~~L~~L~L~~~ 767 (1096)
++.|.++.+|...+. .+++|+.|+|..|.. .. -..+..|++|+.|.+..+
T Consensus 204 LsrNrittLp~r~Fk-~L~~L~~LdLnrN~i-rive~ltFqgL~Sl~nlklqrN 255 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFK-RLPKLESLDLNRNRI-RIVEGLTFQGLPSLQNLKLQRN 255 (873)
T ss_pred cccCcccccCHHHhh-hcchhhhhhccccce-eeehhhhhcCchhhhhhhhhhc
Confidence 888988888876543 378999999988743 32 336788999999999864
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=5.2e-22 Score=224.66 Aligned_cols=93 Identities=28% Similarity=0.468 Sum_probs=82.9
Q ss_pred hhhcCCCCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCC
Q 043647 549 SNLLPKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINL 628 (1096)
Q Consensus 549 ~~~~~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L 628 (1096)
+..+..+.+|+.|.++.|.|...|.+++++.+|+||+|.+|.+..+|.++..+++|++||+++| ....+|.-+..++.+
T Consensus 61 p~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~i~~lt~~ 139 (1081)
T KOG0618|consen 61 PIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN-HFGPIPLVIEVLTAE 139 (1081)
T ss_pred CchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh-ccCCCchhHHhhhHH
Confidence 3445678899999999999999999999999999999999999999999999999999999995 788999989999999
Q ss_pred ceEEeccccccccC
Q 043647 629 RHLVVTYVDLIREM 642 (1096)
Q Consensus 629 ~~L~l~~~~~~~~~ 642 (1096)
..+..++|..+..+
T Consensus 140 ~~~~~s~N~~~~~l 153 (1081)
T KOG0618|consen 140 EELAASNNEKIQRL 153 (1081)
T ss_pred HHHhhhcchhhhhh
Confidence 99999988434433
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=5.7e-14 Score=166.34 Aligned_cols=79 Identities=22% Similarity=0.300 Sum_probs=64.0
Q ss_pred CcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceEEecc
Q 043647 556 TKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLVVTY 635 (1096)
Q Consensus 556 ~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~ 635 (1096)
..-.+|+++++.++.+|..+. .+|+.|++++|.++.+|.. +++|++|++++| .+..+|.. .++|++|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 446689999999999998876 4899999999999999863 578999999985 78888853 46788898888
Q ss_pred ccccccCcc
Q 043647 636 VDLIREMPL 644 (1096)
Q Consensus 636 ~~~~~~~p~ 644 (1096)
|. +..+|.
T Consensus 272 N~-L~~Lp~ 279 (788)
T PRK15387 272 NP-LTHLPA 279 (788)
T ss_pred Cc-hhhhhh
Confidence 86 555554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=6.5e-14 Score=165.85 Aligned_cols=255 Identities=25% Similarity=0.289 Sum_probs=145.0
Q ss_pred CCCCeEEEeeeCCCCCCcccCCccccceeEEeecCCCCCCCCCCCCCcCCcceeecccccceeEecccccCCCCCCCCCC
Q 043647 709 RSLKELTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCTSLPSLGLLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQA 788 (1096)
Q Consensus 709 ~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 788 (1096)
..-..|+++.+....+|..+ .++|+.|++.+| .++.+|.+ +++|+.|+++++ .++.++. .+++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l----~~~L~~L~L~~N-~Lt~LP~l--p~~Lk~LdLs~N-~LtsLP~---------lp~s 263 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCL----PAHITTLVIPDN-NLTSLPAL--PPELRTLEVSGN-QLTSLPV---------LPPG 263 (788)
T ss_pred CCCcEEEcCCCCCCcCCcch----hcCCCEEEccCC-cCCCCCCC--CCCCcEEEecCC-ccCcccC---------cccc
Confidence 34567888888888888765 357889999887 45667753 578899998874 5554431 1345
Q ss_pred CceecccCCCcCcccccCccCCcccccccccEEEEecCCCcCccCCCCCCCccEEEEecccCccccCCCCCCcceEEecc
Q 043647 789 LETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLPNHLPILEKLMIYECVQLVVSFSSLPLLCKLEIDR 868 (1096)
Q Consensus 789 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~ 868 (1096)
|+.|.+.+.. +..+. ..+++|+.|++++| +++ .+|..+ ++|+.|++++
T Consensus 264 L~~L~Ls~N~-L~~Lp--------~lp~~L~~L~Ls~N-~Lt-~LP~~p---------------------~~L~~LdLS~ 311 (788)
T PRK15387 264 LLELSIFSNP-LTHLP--------ALPSGLCKLWIFGN-QLT-SLPVLP---------------------PGLQELSVSD 311 (788)
T ss_pred cceeeccCCc-hhhhh--------hchhhcCEEECcCC-ccc-cccccc---------------------cccceeECCC
Confidence 5555554432 11111 12334555555553 233 344333 4455555555
Q ss_pred CCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEe
Q 043647 869 CKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVW 948 (1096)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~ 948 (1096)
|....+. . ..++|+.|.+++|. ++.+|.. .++|+.|++++ +.++.+|.. ..+|+.|+++
T Consensus 312 N~L~~Lp---------~----lp~~L~~L~Ls~N~-L~~LP~l---p~~Lq~LdLS~-N~Ls~LP~l---p~~L~~L~Ls 370 (788)
T PRK15387 312 NQLASLP---------A----LPSELCKLWAYNNQ-LTSLPTL---PSGLQELSVSD-NQLASLPTL---PSELYKLWAY 370 (788)
T ss_pred CccccCC---------C----CcccccccccccCc-ccccccc---ccccceEecCC-CccCCCCCC---Ccccceehhh
Confidence 5322110 0 11245566666653 4444421 13566666666 355566543 2455666666
Q ss_pred CCCCCcccCCCCCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccE
Q 043647 949 DCPSLVSFPEGGLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTE 1028 (1096)
Q Consensus 949 ~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~ 1028 (1096)
+ +.+..+|. .+++|+.|+++++ .++.+|. ..++|+.|++++| .+..+|. .+.+|+.
T Consensus 371 ~-N~L~~LP~--l~~~L~~LdLs~N-~Lt~LP~-------------l~s~L~~LdLS~N-~LssIP~------l~~~L~~ 426 (788)
T PRK15387 371 N-NRLTSLPA--LPSGLKELIVSGN-RLTSLPV-------------LPSELKELMVSGN-RLTSLPM------LPSGLLS 426 (788)
T ss_pred c-cccccCcc--cccccceEEecCC-cccCCCC-------------cccCCCEEEccCC-cCCCCCc------chhhhhh
Confidence 5 45555653 3456677777664 4444442 1246777777777 5666663 3456777
Q ss_pred EEeccCCCCcccCcCCCCCCCCcCeEeeccC
Q 043647 1029 LVIVRFPKLKYLSSNGFRNLAFLEYLQIRDC 1059 (1096)
Q Consensus 1029 L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c 1059 (1096)
|++++ |+++.|| ..+.++++|+.|+++++
T Consensus 427 L~Ls~-NqLt~LP-~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 427 LSVYR-NQLTRLP-ESLIHLSSETTVNLEGN 455 (788)
T ss_pred hhhcc-CcccccC-hHHhhccCCCeEECCCC
Confidence 77777 5677777 45667777777777774
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.40 E-value=5.9e-15 Score=152.27 Aligned_cols=110 Identities=24% Similarity=0.315 Sum_probs=62.2
Q ss_pred hhhhhhhcCCCCcceEEEecccccccC-CCCcCCCCccceeeccc-cccccccc-ccccCCCCcEEeccCcccCcccCc-
Q 043647 545 DVVLSNLLPKFTKLRVLSLKKYYITEL-PHSIGDLKHLRYINLSE-TMIRCLPE-SICSLCNLQFLILRGCYRLKKLPS- 620 (1096)
Q Consensus 545 ~~~~~~~~~~~~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~-~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~- 620 (1096)
..+++.+|+.+++||.|||+.|.|+.+ |+.|..|..|-.|-+.+ |+|+.+|. .|.+|..|+-|.+.-| .+.-++.
T Consensus 80 ~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan-~i~Cir~~ 158 (498)
T KOG4237|consen 80 SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN-HINCIRQD 158 (498)
T ss_pred ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh-hhcchhHH
Confidence 345556666666666666666666655 66666666655555544 56666654 4556666666666554 3333332
Q ss_pred cccCCCCCceEEeccccccccCcc-cCCCCCCCCcCC
Q 043647 621 NLRNLINLRHLVVTYVDLIREMPL-GIKELKCLQMLS 656 (1096)
Q Consensus 621 ~i~~l~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~ 656 (1096)
.+..|++|..|.+.+|. +..++. .+..+..++++.
T Consensus 159 al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 159 ALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred HHHHhhhcchhcccchh-hhhhccccccchhccchHh
Confidence 34566666666666555 445544 355555555553
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.37 E-value=1.4e-12 Score=156.06 Aligned_cols=82 Identities=22% Similarity=0.369 Sum_probs=67.3
Q ss_pred CcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceEEecc
Q 043647 556 TKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLVVTY 635 (1096)
Q Consensus 556 ~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~ 635 (1096)
.+..+|+++++.++.+|..+. .+|+.|+|++|.++.+|..+. .+|++|++++| .+..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 457889999999999998775 589999999999999998775 58999999986 6888887654 4799999998
Q ss_pred ccccccCccc
Q 043647 636 VDLIREMPLG 645 (1096)
Q Consensus 636 ~~~~~~~p~~ 645 (1096)
|. +..+|..
T Consensus 251 N~-L~~LP~~ 259 (754)
T PRK15370 251 NR-ITELPER 259 (754)
T ss_pred Cc-cCcCChh
Confidence 87 5566543
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.33 E-value=4.8e-14 Score=145.66 Aligned_cols=98 Identities=26% Similarity=0.450 Sum_probs=77.9
Q ss_pred ceEEEecccccccCC-CCcCCCCccceeeccccccccc-ccccccCCCCcEEeccCcccCcccCcc-ccCCCCCceEEec
Q 043647 558 LRVLSLKKYYITELP-HSIGDLKHLRYINLSETMIRCL-PESICSLCNLQFLILRGCYRLKKLPSN-LRNLINLRHLVVT 634 (1096)
Q Consensus 558 Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~ 634 (1096)
-..++|..|.|+.+| ..|+.+++||.||||+|.|+.+ |..|..|.+|..|-+.++++|+++|++ +++|..|+-|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 456788999999995 6789999999999999999988 888999999988888887789999987 5888999988887
Q ss_pred cccccccCcc-cCCCCCCCCcCC
Q 043647 635 YVDLIREMPL-GIKELKCLQMLS 656 (1096)
Q Consensus 635 ~~~~~~~~p~-~i~~L~~L~~L~ 656 (1096)
-|. +..++. .+..|++|..|+
T Consensus 149 an~-i~Cir~~al~dL~~l~lLs 170 (498)
T KOG4237|consen 149 ANH-INCIRQDALRDLPSLSLLS 170 (498)
T ss_pred hhh-hcchhHHHHHHhhhcchhc
Confidence 776 444443 355566665554
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.32 E-value=8.2e-13 Score=160.38 Aligned_cols=106 Identities=30% Similarity=0.364 Sum_probs=84.9
Q ss_pred CCCcceEEEecccc--cccCCC-CcCCCCccceeeccccc-ccccccccccCCCCcEEeccCcccCcccCccccCCCCCc
Q 043647 554 KFTKLRVLSLKKYY--ITELPH-SIGDLKHLRYINLSETM-IRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLR 629 (1096)
Q Consensus 554 ~~~~Lr~L~L~~~~--~~~lp~-~i~~l~~Lr~L~L~~~~-i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~ 629 (1096)
..+.|++|-+.++. +..++. .|..+++|++|||++|. +.+||.+|++|.+|++|++++ +.+..+|.++++|++|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhh
Confidence 34578888888886 555544 36789999999999764 779999999999999999998 57899999999999999
Q ss_pred eEEeccccccccCcccCCCCCCCCcCCceEe
Q 043647 630 HLVVTYVDLIREMPLGIKELKCLQMLSNFIV 660 (1096)
Q Consensus 630 ~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~ 660 (1096)
||++..+.....+|..+..|.+|++|..+..
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeecc
Confidence 9999888766666555666888888865544
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.28 E-value=1.1e-11 Score=148.48 Aligned_cols=160 Identities=25% Similarity=0.423 Sum_probs=92.4
Q ss_pred CccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCCCCcccCCCCCCCCcCeEEEcc
Q 043647 893 ALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCPSLVSFPEGGLPNCSLSVTIGK 972 (1096)
Q Consensus 893 ~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~ 972 (1096)
+|+.|++++|. ++.+|..+. ++|+.|++++| .++.+|..+. ++|+.|++++ +.++.+|. .++++|+.|++++
T Consensus 263 ~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP~-~l~~sL~~L~Ls~ 334 (754)
T PRK15370 263 ALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQS-NSLTALPE-TLPPGLKTLEAGE 334 (754)
T ss_pred CCCEEECcCCc-cCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcC-CccccCCc-cccccceeccccC
Confidence 56667776553 555554332 46777777664 5566664432 4566777776 44555553 3446677777766
Q ss_pred CcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcC
Q 043647 973 CEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLE 1052 (1096)
Q Consensus 973 c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~ 1052 (1096)
| .++.+|. .+ .++|+.|++++| .+..+|.. .+++|+.|+|++| +|+.+|. .+. .+|+
T Consensus 335 N-~Lt~LP~----------~l--~~sL~~L~Ls~N-~L~~LP~~-----lp~~L~~LdLs~N-~Lt~LP~-~l~--~sL~ 391 (754)
T PRK15370 335 N-ALTSLPA----------SL--PPELQVLDVSKN-QITVLPET-----LPPTITTLDVSRN-ALTNLPE-NLP--AALQ 391 (754)
T ss_pred C-ccccCCh----------hh--cCcccEEECCCC-CCCcCChh-----hcCCcCEEECCCC-cCCCCCH-hHH--HHHH
Confidence 5 3444442 12 256777777777 56666652 3466777777773 4666662 222 3577
Q ss_pred eEeeccCCCCCCCCCCC-----ccccccceeeccCcc
Q 043647 1053 YLQIRDCPKLTSFPEAG-----LPSSLLELYINDYPL 1084 (1096)
Q Consensus 1053 ~L~l~~c~~l~~l~~~~-----l~~~L~~L~i~~c~~ 1084 (1096)
.|++++ ++++.+|..- ..+++..|++.++|-
T Consensus 392 ~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 392 IMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred HHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 777777 5566666421 124566677777663
No 22
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.27 E-value=2.5e-10 Score=146.73 Aligned_cols=274 Identities=15% Similarity=0.159 Sum_probs=168.5
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecC-ccChHHHHHHHH
Q 043647 177 EPAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSD-DFDILRITKSIL 255 (1096)
Q Consensus 177 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~ 255 (1096)
.+.++-|..-.+.+-+ ....+++.|.|++|.||||++...... ++.++|+++.. +.++..+...++
T Consensus 13 ~~~~~~R~rl~~~l~~--------~~~~~~~~v~apaG~GKTtl~~~~~~~-----~~~~~w~~l~~~d~~~~~f~~~l~ 79 (903)
T PRK04841 13 LHNTVVRERLLAKLSG--------ANNYRLVLVTSPAGYGKTTLISQWAAG-----KNNLGWYSLDESDNQPERFASYLI 79 (903)
T ss_pred ccccCcchHHHHHHhc--------ccCCCeEEEECCCCCCHHHHHHHHHHh-----CCCeEEEecCcccCCHHHHHHHHH
Confidence 4456777654444421 124689999999999999999988752 33699999964 456667777777
Q ss_pred HhccCCCCC-------------CCcHHHHHHHHHHHh-C-CCcEEEEEecCCCCChhhHHHhhcc-cCCCCCCcEEEEEc
Q 043647 256 ESITFSPNS-------------LKDLNQIQVQLREAV-A-GKRFLIVLDDVWSKNYSLWNTLKSP-FRAGASGSKILVTT 319 (1096)
Q Consensus 256 ~~l~~~~~~-------------~~~~~~~~~~l~~~l-~-~kr~LlVlDdv~~~~~~~~~~l~~~-l~~~~~gs~iivTt 319 (1096)
..+...... ..+...+...+-..+ . +.+++|||||+...+......+... +.....+.++||||
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~s 159 (903)
T PRK04841 80 AALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLS 159 (903)
T ss_pred HHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEe
Confidence 777421110 012222333333333 2 6899999999976543333333333 33344567888999
Q ss_pred Cchhhhh--hc-CCcceeeCC----CCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHHHHhccC
Q 043647 320 CSTDVAL--TV-GTAEYYNLK----LLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGGLLRCK 392 (1096)
Q Consensus 320 R~~~v~~--~~-~~~~~~~l~----~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~ 392 (1096)
|...-.. .. ......++. +|+.+|+.++|...... +-..+.+.+|.+.++|.|+++..++..++..
T Consensus 160 R~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-------~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~ 232 (903)
T PRK04841 160 RNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-------PIEAAESSRLCDDVEGWATALQLIALSARQN 232 (903)
T ss_pred CCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-------CCCHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 9742111 11 112244555 89999999999765521 1123556789999999999999988777544
Q ss_pred CCHHHHHHHHhhhccccc--cCCChHHHHHH-HHhcCchhhHHHhhhhcccCCCccccc----------------cc--c
Q 043647 393 QSDDEWDEILNSKIWYLS--EESNILPVLRL-SYHHLPSHLKRCFAYCAIFPKDYEFEE----------------ME--S 451 (1096)
Q Consensus 393 ~~~~~w~~~~~~~~~~~~--~~~~i~~~l~~-sy~~L~~~~k~~f~~~a~fp~~~~~~~----------------~e--~ 451 (1096)
..... .... ... ....+...+.- .++.||++.+..+...|+++ .+.-.. ++ +
T Consensus 233 ~~~~~--~~~~----~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~~~~~~~L~~l~~~~ 305 (903)
T PRK04841 233 NSSLH--DSAR----RLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGEENGQMRLEELERQG 305 (903)
T ss_pred CCchh--hhhH----hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCCCcHHHHHHHHHHCC
Confidence 22100 0111 111 11235554433 48899999999999999997 333321 11 3
Q ss_pred cc-ccCCCCcceEEehhHHHHHHHHhh
Q 043647 452 IF-QPSSNNSFKFIMHDLVNDLAQWIS 477 (1096)
Q Consensus 452 ~~-~~~~~~~~~~~mhdlv~d~~~~~~ 477 (1096)
+| ...++....|+.|++++++.+...
T Consensus 306 l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 306 LFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred CeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 33 233344457889999999988765
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.20 E-value=2.8e-13 Score=123.48 Aligned_cols=103 Identities=31% Similarity=0.423 Sum_probs=55.6
Q ss_pred cCCCCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccC-cccCccccCCCCCce
Q 043647 552 LPKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRL-KKLPSNLRNLINLRH 630 (1096)
Q Consensus 552 ~~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l-~~lp~~i~~l~~L~~ 630 (1096)
+..+++|++|++++|+++.+|.+++.+++||.|++.-|.+..+|..|+.++-|++|||.+|+-- ..+|-.+..|+.|+-
T Consensus 52 ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlra 131 (264)
T KOG0617|consen 52 IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRA 131 (264)
T ss_pred HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHH
Confidence 3455555555555555555555555555555555555555555555555555555555553211 125555555555555
Q ss_pred EEeccccccccCcccCCCCCCCCcC
Q 043647 631 LVVTYVDLIREMPLGIKELKCLQML 655 (1096)
Q Consensus 631 L~l~~~~~~~~~p~~i~~L~~L~~L 655 (1096)
|++++|. ...+|..+++|++||.|
T Consensus 132 lyl~dnd-fe~lp~dvg~lt~lqil 155 (264)
T KOG0617|consen 132 LYLGDND-FEILPPDVGKLTNLQIL 155 (264)
T ss_pred HHhcCCC-cccCChhhhhhcceeEE
Confidence 5555554 45555555555555555
No 24
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.18 E-value=1.8e-09 Score=123.82 Aligned_cols=252 Identities=13% Similarity=0.108 Sum_probs=152.0
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccc-cCcEEEEEecCccChHHHHHHH
Q 043647 176 TEPAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEM-FNLRSWVCVSDDFDILRITKSI 254 (1096)
Q Consensus 176 ~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i 254 (1096)
.++.++||+++++++...+...-. +.....+.|+|++|+|||++++.++++..... .-..++|++....+...++..+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~-~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR-GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC-CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 356799999999999998843221 22345678999999999999999998654332 2346677777777788999999
Q ss_pred HHhccCCCC--CCCcHHHHHHHHHHHhC--CCcEEEEEecCCCCC----hhhHHHhhcccCCCCCCcE--EEEEcCchhh
Q 043647 255 LESITFSPN--SLKDLNQIQVQLREAVA--GKRFLIVLDDVWSKN----YSLWNTLKSPFRAGASGSK--ILVTTCSTDV 324 (1096)
Q Consensus 255 ~~~l~~~~~--~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs~--iivTtR~~~v 324 (1096)
+.++..... ...+.+++...+.+.++ +++.+||||+++.-. .+.+..+...+... .+++ +|.++....+
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISSDLTF 185 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEECCcch
Confidence 999876321 22345666667777664 456899999997532 12233333322221 2333 5666655443
Q ss_pred hhhcC-------CcceeeCCCCChHhHHHHHHHhhcCC--CCCCCCcchhHHHHHHHHHhCCCchhHHHHHHHh--c---
Q 043647 325 ALTVG-------TAEYYNLKLLSDDDCWSVFVKHAFEK--RDVGLHRHMGSIRKKVVQKCRGLPLAAETLGGLL--R--- 390 (1096)
Q Consensus 325 ~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~--~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l--~--- 390 (1096)
..... ....+.+++++.++..+++..++-.. ...-.+..+..+++......|..+.|+.++-... +
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 32221 12467899999999999998876221 1111122222333333233455677776654322 1
Q ss_pred cC--CCHHHHHHHHhhhccccccCCChHHHHHHHHhcCchhhHHHhhhhc
Q 043647 391 CK--QSDDEWDEILNSKIWYLSEESNILPVLRLSYHHLPSHLKRCFAYCA 438 (1096)
Q Consensus 391 ~~--~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a 438 (1096)
.. -+.+.+..+.+.. -.....-.+..||.+.|..+..++
T Consensus 266 ~~~~I~~~~v~~a~~~~---------~~~~~~~~~~~L~~~~k~~L~ai~ 306 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKS---------EIVHLSEVLRTLPLHEKLLLRAIV 306 (394)
T ss_pred CCCCcCHHHHHHHHHHH---------HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 11 1345555555442 122345568899999888766544
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.17 E-value=6.6e-13 Score=121.08 Aligned_cols=102 Identities=31% Similarity=0.425 Sum_probs=81.2
Q ss_pred CCCCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceEE
Q 043647 553 PKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLV 632 (1096)
Q Consensus 553 ~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 632 (1096)
-.+.++..|.|++|.++.+|..|..|.+|++|++++|+|.++|.+++.+++|+.|+++- +++..+|.+++.++.|+.|+
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhh
Confidence 35677788889999999898889999999999999999999999999999999999988 47888899999999999999
Q ss_pred ecccccc-ccCcccCCCCCCCCcC
Q 043647 633 VTYVDLI-REMPLGIKELKCLQML 655 (1096)
Q Consensus 633 l~~~~~~-~~~p~~i~~L~~L~~L 655 (1096)
+++|+.- ..+|..+-.++.|+.|
T Consensus 109 ltynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred ccccccccccCCcchhHHHHHHHH
Confidence 9887622 2345445444444443
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.14 E-value=6.3e-09 Score=112.61 Aligned_cols=182 Identities=19% Similarity=0.199 Sum_probs=116.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHH----H-
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLRE----A- 278 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~- 278 (1096)
.+++.|+|++|+||||+++.+++......+ .++|+ +....+..+++..++..++..... .+.......+.+ .
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQF 119 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHHH
Confidence 458999999999999999999986542211 12233 333457788999999888765432 222222333332 2
Q ss_pred hCCCcEEEEEecCCCCChhhHHHhhcccCC---CCCCcEEEEEcCchhhhhhcC----------CcceeeCCCCChHhHH
Q 043647 279 VAGKRFLIVLDDVWSKNYSLWNTLKSPFRA---GASGSKILVTTCSTDVALTVG----------TAEYYNLKLLSDDDCW 345 (1096)
Q Consensus 279 l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~---~~~gs~iivTtR~~~v~~~~~----------~~~~~~l~~L~~~~~~ 345 (1096)
..+++.++|+||+|......++.+...... ......|++|... .....+. ....+.+++++.+|..
T Consensus 120 ~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~ 198 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREETR 198 (269)
T ss_pred hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHHHH
Confidence 368889999999998766666665432221 1122244555443 2221111 1235789999999999
Q ss_pred HHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHHHHh
Q 043647 346 SVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGGLL 389 (1096)
Q Consensus 346 ~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 389 (1096)
+++...+...+......-..+..+.|++.++|.|..|..++..+
T Consensus 199 ~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 199 EYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99887763322111112235788899999999999999888766
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.05 E-value=3e-08 Score=112.63 Aligned_cols=252 Identities=13% Similarity=0.070 Sum_probs=146.3
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc--cc---CcEEEEEecCccChHHHH
Q 043647 177 EPAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE--MF---NLRSWVCVSDDFDILRIT 251 (1096)
Q Consensus 177 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~f---~~~~wv~~~~~~~~~~~~ 251 (1096)
++.++||++++++|..++..... +...+.+.|+|++|+|||++++.+++..... .. -..+|+++....+...++
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~-~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILR-GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHc-CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 34799999999999999854211 1234578999999999999999999864321 11 135677777777788899
Q ss_pred HHHHHhcc---CCCC-CCCcHHHHHHHHHHHh--CCCcEEEEEecCCCCC---hhhHHHhhccc-CCCC--CCcEEEEEc
Q 043647 252 KSILESIT---FSPN-SLKDLNQIQVQLREAV--AGKRFLIVLDDVWSKN---YSLWNTLKSPF-RAGA--SGSKILVTT 319 (1096)
Q Consensus 252 ~~i~~~l~---~~~~-~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~---~~~~~~l~~~l-~~~~--~gs~iivTt 319 (1096)
..|+.++. .... ...+..+....+.+.+ .+++++||||+++.-. ......+.... .... ....+|.+|
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 99999884 2211 1223444555555555 3568899999997541 11122222221 0111 223455555
Q ss_pred CchhhhhhcC-------CcceeeCCCCChHhHHHHHHHhhcC-CCCCCCCcchhHHHHHHHHHhCCCchhH-HHHHHHh-
Q 043647 320 CSTDVALTVG-------TAEYYNLKLLSDDDCWSVFVKHAFE-KRDVGLHRHMGSIRKKVVQKCRGLPLAA-ETLGGLL- 389 (1096)
Q Consensus 320 R~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a~~-~~~~~~~~~~~~~~~~i~~~~~g~PLai-~~~~~~l- 389 (1096)
........+. ....+.+++.+.++..+++..++-. .......++..+...+++....|.|-.+ .++-...
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4443322111 1245889999999999999887631 1111122333345556777777888443 3222111
Q ss_pred -c---cC--CCHHHHHHHHhhhccccccCCChHHHHHHHHhcCchhhHHHhhhhc
Q 043647 390 -R---CK--QSDDEWDEILNSKIWYLSEESNILPVLRLSYHHLPSHLKRCFAYCA 438 (1096)
Q Consensus 390 -~---~~--~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a 438 (1096)
. .. -+.+..+.+.+.. -.....-++..||.+.+..+..++
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~---------~~~~~~~~i~~l~~~~~~~l~ai~ 298 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKI---------EKDRLLELIRGLPTHSKLVLLAIA 298 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHH---------HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 11 1344444443332 123344567889998887666554
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.04 E-value=1.7e-12 Score=135.68 Aligned_cols=284 Identities=14% Similarity=0.176 Sum_probs=143.8
Q ss_pred ceeEEeecCCCCCCCCC---CCCCcCCcceeecccccceeEecccccCCCCCCCCCCCceecccCCCcCcccccCccCCc
Q 043647 735 NIVLLRLEDCEKCTSLP---SLGLLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQALETLCFEDLPEWEHWNSFKENDH 811 (1096)
Q Consensus 735 ~L~~L~L~~~~~~~~l~---~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 811 (1096)
.|+.|.+.+|.....-+ ....+|+++.|.+.+|..+++......+ ..+++|+.|.+..|+.|++......
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla----~~C~~l~~l~L~~c~~iT~~~Lk~l--- 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA----RYCRKLRHLNLHSCSSITDVSLKYL--- 211 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHH----HhcchhhhhhhcccchhHHHHHHHH---
Confidence 34555555554433222 2345677777777777766554332222 2377788888888777776544322
Q ss_pred ccccccccEEEEecCCCcCc----cCCCCCCCccEEEEecccCccccCCCCCCcceEEeccCCCccccCCCCcccccCCC
Q 043647 812 VERFACLRQLSIVKCPRLCG----RLPNHLPILEKLMIYECVQLVVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDS 887 (1096)
Q Consensus 812 ~~~~~~L~~L~l~~c~~l~~----~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 887 (1096)
...+++|++|+++.|+.+++ .+..+...++.+...+|..... ..+...
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l---------------------e~l~~~------- 263 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL---------------------EALLKA------- 263 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH---------------------HHHHHH-------
Confidence 45788888888888887764 1222333344444444443221 100000
Q ss_pred CCCCCCccEEEEccCCCcccch--hhcCCCCCcCeEEEecCCCcCcCC--CCCCCCCCcCeEEEeCCCCCcccCCCCCC-
Q 043647 888 FKYFRALQQLEILDCPKLESIA--ERFHNNTSLGCIWIWKCENLKSLP--EGLPNLNSLHNIYVWDCPSLVSFPEGGLP- 962 (1096)
Q Consensus 888 l~~l~~L~~L~L~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~lp--~~l~~l~~L~~L~l~~c~~l~~l~~~~~~- 962 (1096)
-...+-+.++++.+|..++... ..-..+..|+.|..++|..+...+ ..-.+.++|+.|.+++|..++......+.
T Consensus 264 ~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r 343 (483)
T KOG4341|consen 264 AAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR 343 (483)
T ss_pred hccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc
Confidence 0111223344444444443321 112344555555555554443322 11234455555555555544332211111
Q ss_pred --CCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCcccc-----ccccccCcCCCCccEEEeccCC
Q 043647 963 --NCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSF-----PEEEIGMTFPSSLTELVIVRFP 1035 (1096)
Q Consensus 963 --~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l-----~~~~~~~~~~~sL~~L~l~~c~ 1035 (1096)
+.|+.+++..|..++.-. ....-.+++.|+.|.+++|..+++- ... -.....|+.|.+++|+
T Consensus 344 n~~~Le~l~~e~~~~~~d~t--------L~sls~~C~~lr~lslshce~itD~gi~~l~~~---~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGT--------LASLSRNCPRLRVLSLSHCELITDEGIRHLSSS---SCSLEGLEVLELDNCP 412 (483)
T ss_pred CChhhhhhcccccceehhhh--------HhhhccCCchhccCChhhhhhhhhhhhhhhhhc---cccccccceeeecCCC
Confidence 445555555554433310 0012335677777777777655443 111 1234567777777777
Q ss_pred CCcccCcCCCCCCCCcCeEeeccCCCCCC
Q 043647 1036 KLKYLSSNGFRNLAFLEYLQIRDCPKLTS 1064 (1096)
Q Consensus 1036 ~l~~l~~~~l~~l~~L~~L~l~~c~~l~~ 1064 (1096)
.++.-..+.+...++|+.+++.+|..++.
T Consensus 413 ~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 413 LITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred CchHHHHHHHhhCcccceeeeechhhhhh
Confidence 76654434556667777777777766554
No 29
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.02 E-value=1.4e-09 Score=115.24 Aligned_cols=194 Identities=18% Similarity=0.196 Sum_probs=98.9
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHH------
Q 043647 180 VFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKS------ 253 (1096)
Q Consensus 180 ~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~------ 253 (1096)
|+||++++++|.+++... ..+.+.|+|+.|+|||+|++.+.+......+ .++|+........ .....
T Consensus 1 F~gR~~el~~l~~~l~~~-----~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~-~~~y~~~~~~~~~-~~~~~~~~~~~ 73 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG-----PSQHILLYGPRGSGKTSLLKEFINELKEKGY-KVVYIDFLEESNE-SSLRSFIEETS 73 (234)
T ss_dssp S-S-HHHHHHHHHCHHH-------SSEEEEEESTTSSHHHHHHHHHHHCT--EE-CCCHHCCTTBSHH-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh-----cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC-cEEEEecccchhh-hHHHHHHHHHH
Confidence 789999999999988543 2468999999999999999999986533222 3334433333221 11111
Q ss_pred --------HHHhccCCCC------CCCcHHHHHHHHHHHh--CCCcEEEEEecCCCCC------hhhHHHhhcccC---C
Q 043647 254 --------ILESITFSPN------SLKDLNQIQVQLREAV--AGKRFLIVLDDVWSKN------YSLWNTLKSPFR---A 308 (1096)
Q Consensus 254 --------i~~~l~~~~~------~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~------~~~~~~l~~~l~---~ 308 (1096)
+...+..... ...........+.+.+ .+++++||+||+.... ......+...+. .
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (234)
T PF01637_consen 74 LADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS 153 (234)
T ss_dssp HHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc
Confidence 2111111110 0111122222222222 3456999999996543 111122222222 2
Q ss_pred CCCCcEEEEEcCchhhhhh--------cCCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCch
Q 043647 309 GASGSKILVTTCSTDVALT--------VGTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPL 380 (1096)
Q Consensus 309 ~~~gs~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL 380 (1096)
..+.+.|+++|. ...... .+....+.+++++.+++++++...+-.. ... +.-.+..++|...+||+|.
T Consensus 154 ~~~~~~v~~~S~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 154 QQNVSIVITGSS-DSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp -TTEEEEEEESS-HHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HH
T ss_pred cCCceEEEECCc-hHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCHH
Confidence 333444544444 333322 1223459999999999999998876322 111 2234556899999999998
Q ss_pred hHHH
Q 043647 381 AAET 384 (1096)
Q Consensus 381 ai~~ 384 (1096)
.|..
T Consensus 230 ~l~~ 233 (234)
T PF01637_consen 230 YLQE 233 (234)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8754
No 30
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.96 E-value=3e-09 Score=115.56 Aligned_cols=160 Identities=23% Similarity=0.380 Sum_probs=90.4
Q ss_pred CCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCCCCcccCCCCCCCCcCeEEE
Q 043647 891 FRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCPSLVSFPEGGLPNCSLSVTI 970 (1096)
Q Consensus 891 l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l 970 (1096)
+++++.|++++| .++.+|. -.++|+.|.+++|+.++.+|..+ .++|+.|++++|..+..+ |.+|+.|++
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe~L~L 119 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-----PESVRSLEI 119 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-----ccccceEEe
Confidence 345666666666 4666651 22357777777777776666544 356777777777665543 345666666
Q ss_pred cc--CcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCc--cccccccccCcCCCCccEEEeccCCCCcccCcCCCC
Q 043647 971 GK--CEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDA--VSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFR 1046 (1096)
Q Consensus 971 ~~--c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l--~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~ 1046 (1096)
.. |..+..+| ++|++|.+.++... ..+|. ..|++|+.|.+++|..+. +| ..+.
T Consensus 120 ~~n~~~~L~~LP----------------ssLk~L~I~~~n~~~~~~lp~-----~LPsSLk~L~Is~c~~i~-LP-~~LP 176 (426)
T PRK15386 120 KGSATDSIKNVP----------------NGLTSLSINSYNPENQARIDN-----LISPSLKTLSLTGCSNII-LP-EKLP 176 (426)
T ss_pred CCCCCcccccCc----------------chHhheecccccccccccccc-----ccCCcccEEEecCCCccc-Cc-cccc
Confidence 43 22233333 35666666443211 11221 356778888887776443 33 2333
Q ss_pred CCCCcCeEeeccCCCC-CCCCCCCccccccceeeccCcchhh
Q 043647 1047 NLAFLEYLQIRDCPKL-TSFPEAGLPSSLLELYINDYPLMTK 1087 (1096)
Q Consensus 1047 ~l~~L~~L~l~~c~~l-~~l~~~~l~~~L~~L~i~~c~~L~~ 1087 (1096)
.+|+.|.++.+... ..++...+|+++ .|++.+|-.+..
T Consensus 177 --~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~ 215 (426)
T PRK15386 177 --ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSP 215 (426)
T ss_pred --ccCcEEEecccccccccCccccccccc-EechhhhcccCH
Confidence 57777777664321 134445566777 777777755543
No 31
>PF05729 NACHT: NACHT domain
Probab=98.92 E-value=6.6e-09 Score=103.38 Aligned_cols=142 Identities=22% Similarity=0.234 Sum_probs=89.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcccccc-c----cCcEEEEEecCccChH---HHHHHHHHhccCCCCCCCcHHHHHHHHH
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVE-M----FNLRSWVCVSDDFDIL---RITKSILESITFSPNSLKDLNQIQVQLR 276 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 276 (1096)
|++.|+|.+|+||||+++.++.+.... . +...+|+..+...... .+...+..+...... .... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---PIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---hhHH---HHH
Confidence 579999999999999999998865544 2 4566777766543322 344444433332111 1111 122
Q ss_pred H-HhCCCcEEEEEecCCCCChh-------hHHHhhcccCC--CCCCcEEEEEcCchhh---hhhcCCcceeeCCCCChHh
Q 043647 277 E-AVAGKRFLIVLDDVWSKNYS-------LWNTLKSPFRA--GASGSKILVTTCSTDV---ALTVGTAEYYNLKLLSDDD 343 (1096)
Q Consensus 277 ~-~l~~kr~LlVlDdv~~~~~~-------~~~~l~~~l~~--~~~gs~iivTtR~~~v---~~~~~~~~~~~l~~L~~~~ 343 (1096)
. ..+.+++++|+|++++.... .+..+...+.. ..++.+++||+|.... .........+.+.++++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 2 22678999999999764321 12223322222 2468999999998766 3333444689999999999
Q ss_pred HHHHHHHhh
Q 043647 344 CWSVFVKHA 352 (1096)
Q Consensus 344 ~~~lf~~~a 352 (1096)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999987654
No 32
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.79 E-value=1.9e-08 Score=109.44 Aligned_cols=138 Identities=25% Similarity=0.471 Sum_probs=104.5
Q ss_pred cCCCCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCCCCcccCCCCCCCCcCeEEEccCcCCcCCCCCCCCCCCCcc
Q 043647 912 FHNNTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCPSLVSFPEGGLPNCSLSVTIGKCEKLKALPNLNAYESPIDW 991 (1096)
Q Consensus 912 ~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~ 991 (1096)
+..+..++.|++++| .++.+|. -.++|++|.+++|+.++.+|. .+|++|+.|.+++|.++..+|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~sLP----------- 111 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGLP----------- 111 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCc-hhhhhhhheEccCcccccccc-----------
Confidence 456799999999999 7888883 345799999999999999984 678999999999999888876
Q ss_pred cCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCc--ccCcCCCCCCCCcCeEeeccCCCCCCCCCCC
Q 043647 992 GLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLK--YLSSNGFRNLAFLEYLQIRDCPKLTSFPEAG 1069 (1096)
Q Consensus 992 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~--~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~ 1069 (1096)
++|+.|+++++ ....++ ..|++|+.|.+.+++... .+| ..+ -++|++|.+++|..+. +| .+
T Consensus 112 -----~sLe~L~L~~n-~~~~L~------~LPssLk~L~I~~~n~~~~~~lp-~~L--PsSLk~L~Is~c~~i~-LP-~~ 174 (426)
T PRK15386 112 -----ESVRSLEIKGS-ATDSIK------NVPNGLTSLSINSYNPENQARID-NLI--SPSLKTLSLTGCSNII-LP-EK 174 (426)
T ss_pred -----cccceEEeCCC-CCcccc------cCcchHhheeccccccccccccc-ccc--CCcccEEEecCCCccc-Cc-cc
Confidence 46888888764 443443 356679999886544221 122 111 1689999999998653 45 45
Q ss_pred ccccccceeeccC
Q 043647 1070 LPSSLLELYINDY 1082 (1096)
Q Consensus 1070 l~~~L~~L~i~~c 1082 (1096)
+|.+|+.|+++.+
T Consensus 175 LP~SLk~L~ls~n 187 (426)
T PRK15386 175 LPESLQSITLHIE 187 (426)
T ss_pred ccccCcEEEeccc
Confidence 8999999999875
No 33
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.79 E-value=7e-08 Score=106.90 Aligned_cols=242 Identities=13% Similarity=0.123 Sum_probs=126.3
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHH
Q 043647 177 EPAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 177 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
-.+|+|+++.++.+..++..........+.+.|+|++|+||||+|+.+++..... ..++..+ .......+..++.
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~----~~~~~~~-~~~~~~~l~~~l~ 98 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN----IRITSGP-ALEKPGDLAAILT 98 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC----eEEEecc-cccChHHHHHHHH
Confidence 3569999999999887775321112335678899999999999999999864332 1112111 1111122233333
Q ss_pred hccCCCC-CCCcH----HHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchhhhhhcC--
Q 043647 257 SITFSPN-SLKDL----NQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTDVALTVG-- 329 (1096)
Q Consensus 257 ~l~~~~~-~~~~~----~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~-- 329 (1096)
.+....- -.++. ......+...+.+.+..+|+|+..+... +...+ .+.+-|..|++...+...+.
T Consensus 99 ~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~-----~~~~l---~~~~li~at~~~~~l~~~L~sR 170 (328)
T PRK00080 99 NLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARS-----IRLDL---PPFTLIGATTRAGLLTSPLRDR 170 (328)
T ss_pred hcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccc-----eeecC---CCceEEeecCCcccCCHHHHHh
Confidence 3221100 00011 1112223333444444555554432210 00011 12345666777544433221
Q ss_pred CcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHHHHhccCCCHHHHHHHHhhhcccc
Q 043647 330 TAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGGLLRCKQSDDEWDEILNSKIWYL 409 (1096)
Q Consensus 330 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~~~~~~~ 409 (1096)
....+.+++++.++..+++.+.+...+ . .-..+.+..|++.|+|.|-.+..+...+ ..|...... ...
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~~-~---~~~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~--~~I 238 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARILG-V---EIDEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGD--GVI 238 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcC-C---CcCHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCC--CCC
Confidence 124689999999999999998874322 1 2234678899999999995444443322 122211110 000
Q ss_pred cc--CCChHHHHHHHHhcCchhhHHHhh-hhcccCCC
Q 043647 410 SE--ESNILPVLRLSYHHLPSHLKRCFA-YCAIFPKD 443 (1096)
Q Consensus 410 ~~--~~~i~~~l~~sy~~L~~~~k~~f~-~~a~fp~~ 443 (1096)
.. -......+...|..|++..+..+. ....|+.+
T Consensus 239 ~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 275 (328)
T PRK00080 239 TKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG 275 (328)
T ss_pred CHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC
Confidence 00 012233455667778887777775 55666544
No 34
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.79 E-value=6.7e-11 Score=123.98 Aligned_cols=287 Identities=15% Similarity=0.162 Sum_probs=178.1
Q ss_pred CCcceeecccccceeEecccccCCCCCCCCCCCceecccCCCcCcccccCccCCcccccccccEEEEecCCCcCc----c
Q 043647 757 GSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQALETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCG----R 832 (1096)
Q Consensus 757 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~----~ 832 (1096)
..|+.|.+.+|..+..-+..-+. ..+|+++.|.+.+|..+++-..... ...++.|+.|++..|+.++. .
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~----~~CpnIehL~l~gc~~iTd~s~~sl---a~~C~~l~~l~L~~c~~iT~~~Lk~ 210 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFA----SNCPNIEHLALYGCKKITDSSLLSL---ARYCRKLRHLNLHSCSSITDVSLKY 210 (483)
T ss_pred cccccccccccccCCcchhhHHh----hhCCchhhhhhhcceeccHHHHHHH---HHhcchhhhhhhcccchhHHHHHHH
Confidence 45788888887665443322111 3467777777777766655433322 34466677777776666542 1
Q ss_pred CCCCCCCccEEEEecccCccccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCccc--chh
Q 043647 833 LPNHLPILEKLMIYECVQLVVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLES--IAE 910 (1096)
Q Consensus 833 ~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~--l~~ 910 (1096)
+..+.++|+ .|+++.|+.+.-..+. .-..+...++.+.+.+|..++. +-.
T Consensus 211 la~gC~kL~---------------------~lNlSwc~qi~~~gv~-------~~~rG~~~l~~~~~kGC~e~~le~l~~ 262 (483)
T KOG4341|consen 211 LAEGCRKLK---------------------YLNLSWCPQISGNGVQ-------ALQRGCKELEKLSLKGCLELELEALLK 262 (483)
T ss_pred HHHhhhhHH---------------------HhhhccCchhhcCcch-------HHhccchhhhhhhhcccccccHHHHHH
Confidence 223444444 4444444433311100 1123444567777777765442 333
Q ss_pred hcCCCCCcCeEEEecCCCcCcCCC--CCCCCCCcCeEEEeCCCCCcccCCCC---CCCCcCeEEEccCcCCcCCCCCCCC
Q 043647 911 RFHNNTSLGCIWIWKCENLKSLPE--GLPNLNSLHNIYVWDCPSLVSFPEGG---LPNCSLSVTIGKCEKLKALPNLNAY 985 (1096)
Q Consensus 911 ~~~~l~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~l~~c~~l~~l~~l~~~ 985 (1096)
.-..+..+.++++.+|+.++...- .-..+..|+.|+.++|..++..+-.. -..+|+.|.+..|.++++.-
T Consensus 263 ~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~----- 337 (483)
T KOG4341|consen 263 AAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG----- 337 (483)
T ss_pred HhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh-----
Confidence 335677788888889988877531 12457899999999999876654322 22899999999999876631
Q ss_pred CCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCc----CCCCCCCCcCeEeeccCCC
Q 043647 986 ESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSS----NGFRNLAFLEYLQIRDCPK 1061 (1096)
Q Consensus 986 ~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~----~~l~~l~~L~~L~l~~c~~ 1061 (1096)
....-.+.+.|+.+++..|..+.+-.-...+ .+.+.|+.|.+++|..+++... .+-.....|..+.+++||.
T Consensus 338 ---ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls-~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 338 ---FTMLGRNCPHLERLDLEECGLITDGTLASLS-RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL 413 (483)
T ss_pred ---hhhhhcCChhhhhhcccccceehhhhHhhhc-cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence 1112246789999999999665443111111 5688999999999987775511 2223457899999999999
Q ss_pred CCCCCC--CCccccccceeeccCcchhh
Q 043647 1062 LTSFPE--AGLPSSLLELYINDYPLMTK 1087 (1096)
Q Consensus 1062 l~~l~~--~~l~~~L~~L~i~~c~~L~~ 1087 (1096)
++.--- ....++|+.+++++|-...+
T Consensus 414 i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 414 ITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred chHHHHHHHhhCcccceeeeechhhhhh
Confidence 775222 12256899999999976543
No 35
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.77 E-value=1.2e-07 Score=104.41 Aligned_cols=193 Identities=15% Similarity=0.121 Sum_probs=108.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
.+|+|+++.++++..++............+.++|++|+|||+||+.+++..... + ..+..+...... .+...+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~-~---~~~~~~~~~~~~-~l~~~l~~ 78 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN-L---KITSGPALEKPG-DLAAILTN 78 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC-E---EEeccchhcCch-hHHHHHHh
Confidence 368999999999988885322222335568899999999999999998854332 1 112111111111 12222223
Q ss_pred ccCCCC-CCCcH----HHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchhhhhhc--CC
Q 043647 258 ITFSPN-SLKDL----NQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTDVALTV--GT 330 (1096)
Q Consensus 258 l~~~~~-~~~~~----~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~--~~ 330 (1096)
+....- -.++. ......+...+.+.+..+|+|+.... ..| ...+ .+.+-|..||+...+...+ ..
T Consensus 79 ~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~---~~~~---~~~~li~~t~~~~~l~~~l~sR~ 150 (305)
T TIGR00635 79 LEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSV---RLDL---PPFTLVGATTRAGMLTSPLRDRF 150 (305)
T ss_pred cccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--cce---eecC---CCeEEEEecCCccccCHHHHhhc
Confidence 221110 00111 11223344455555556666655333 111 1111 1245566677765443321 11
Q ss_pred cceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHHH
Q 043647 331 AEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGG 387 (1096)
Q Consensus 331 ~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 387 (1096)
...+.+++++.++..+++.+.+...+ . .-..+....|++.|+|.|-.+..++.
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~-~---~~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLN-V---EIEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhC-C---CcCHHHHHHHHHHhCCCcchHHHHHH
Confidence 24678999999999999998874322 1 22345678899999999976654443
No 36
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.75 E-value=4.5e-07 Score=104.81 Aligned_cols=280 Identities=16% Similarity=0.180 Sum_probs=175.4
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCc-cChHHHHHHHH
Q 043647 177 EPAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDD-FDILRITKSIL 255 (1096)
Q Consensus 177 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~ 255 (1096)
+...|-|.. +++.|... .+.+.+.|..++|.||||++.+... ....=..+.|.++++. .++..+.+.++
T Consensus 18 ~~~~v~R~r----L~~~L~~~----~~~RL~li~APAGfGKttl~aq~~~--~~~~~~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 18 PDNYVVRPR----LLDRLRRA----NDYRLILISAPAGFGKTTLLAQWRE--LAADGAAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred cccccccHH----HHHHHhcC----CCceEEEEeCCCCCcHHHHHHHHHH--hcCcccceeEeecCCccCCHHHHHHHHH
Confidence 344555544 55555322 3579999999999999999988864 1112346899998764 56888889898
Q ss_pred HhccCCCCCC-------------CcHHHHHHHHHHHhC--CCcEEEEEecCCCCChhhHH-HhhcccCCCCCCcEEEEEc
Q 043647 256 ESITFSPNSL-------------KDLNQIQVQLREAVA--GKRFLIVLDDVWSKNYSLWN-TLKSPFRAGASGSKILVTT 319 (1096)
Q Consensus 256 ~~l~~~~~~~-------------~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~-~l~~~l~~~~~gs~iivTt 319 (1096)
..++...... .+...+...+...+. .++..+||||..-....... .+...+.....+-.+||||
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~S 167 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTS 167 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEe
Confidence 8887433221 222333333433332 46899999998654323333 3333444556788999999
Q ss_pred Cchhhhhhc---CCcceeeCC----CCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHHHHhccC
Q 043647 320 CSTDVALTV---GTAEYYNLK----LLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGGLLRCK 392 (1096)
Q Consensus 320 R~~~v~~~~---~~~~~~~l~----~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~ 392 (1096)
|...-.... -.....++. .++.+|+-++|...... +-.+..++.+.+..+|-+-|+..++=.++..
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-------~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~ 240 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-------PLDAADLKALYDRTEGWAAALQLIALALRNN 240 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-------CCChHHHHHHHhhcccHHHHHHHHHHHccCC
Confidence 986432111 111233333 57899999999876511 2234456789999999999999998888744
Q ss_pred CCHHHHHHHHhhhccccccCCChHH-HHHHHHhcCchhhHHHhhhhcccCCCc--ccc-------------ccc---ccc
Q 043647 393 QSDDEWDEILNSKIWYLSEESNILP-VLRLSYHHLPSHLKRCFAYCAIFPKDY--EFE-------------EME---SIF 453 (1096)
Q Consensus 393 ~~~~~w~~~~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k~~f~~~a~fp~~~--~~~-------------~~e---~~~ 453 (1096)
.+.+.--..+.-. ...+.. ...--++.||+++|.-++-+|+++.-. -+. .++ -|+
T Consensus 241 ~~~~q~~~~LsG~------~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f~~eL~~~Ltg~~ng~amLe~L~~~gLFl 314 (894)
T COG2909 241 TSAEQSLRGLSGA------ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRFNDELCNALTGEENGQAMLEELERRGLFL 314 (894)
T ss_pred CcHHHHhhhccch------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhHHHHHHHhcCCcHHHHHHHHHhCCCce
Confidence 3333222211100 001111 223357889999999999999985421 111 122 355
Q ss_pred ccCCCCcceEEehhHHHHHHHHhhcc
Q 043647 454 QPSSNNSFKFIMHDLVNDLAQWISGE 479 (1096)
Q Consensus 454 ~~~~~~~~~~~mhdlv~d~~~~~~~~ 479 (1096)
++-++....|+.|.++.||-+.-...
T Consensus 315 ~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 315 QRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred eeecCCCceeehhHHHHHHHHhhhcc
Confidence 66778888999999999998765443
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.71 E-value=8.8e-10 Score=123.10 Aligned_cols=88 Identities=25% Similarity=0.228 Sum_probs=46.6
Q ss_pred hhcCCCCcceEEEecccccc-----cCCCCcCCCCccceeecccccccc-------cccccccCCCCcEEeccCcccCcc
Q 043647 550 NLLPKFTKLRVLSLKKYYIT-----ELPHSIGDLKHLRYINLSETMIRC-------LPESICSLCNLQFLILRGCYRLKK 617 (1096)
Q Consensus 550 ~~~~~~~~Lr~L~L~~~~~~-----~lp~~i~~l~~Lr~L~L~~~~i~~-------lp~~i~~L~~L~~L~L~~~~~l~~ 617 (1096)
..|..+..|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+.++.+|+.|++++|.....
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 34455556777777776652 244445555666666666655442 233445555666666666533223
Q ss_pred cCccccCCCC---CceEEecccc
Q 043647 618 LPSNLRNLIN---LRHLVVTYVD 637 (1096)
Q Consensus 618 lp~~i~~l~~---L~~L~l~~~~ 637 (1096)
.+..+..+.+ |++|++++|.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCc
Confidence 3333333333 6666665554
No 38
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.70 E-value=9.6e-07 Score=102.78 Aligned_cols=212 Identities=10% Similarity=0.035 Sum_probs=119.9
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccc---c-ccC--cEEEEEecCccChHHH
Q 043647 177 EPAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAV---E-MFN--LRSWVCVSDDFDILRI 250 (1096)
Q Consensus 177 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~-~f~--~~~wv~~~~~~~~~~~ 250 (1096)
|+.+.||++++++|...|...-.+.....++.|+|++|+|||+.++.|.+.... + ... .+++|.+..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 457889999999999888543222223367889999999999999999875422 1 111 3567777776788889
Q ss_pred HHHHHHhccCCCC-CCCcHHHHHHHHHHHh-C--CCcEEEEEecCCCCChhhHHHhhcccCC-CCCCcEEEE--EcCchh
Q 043647 251 TKSILESITFSPN-SLKDLNQIQVQLREAV-A--GKRFLIVLDDVWSKNYSLWNTLKSPFRA-GASGSKILV--TTCSTD 323 (1096)
Q Consensus 251 ~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l-~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iiv--TtR~~~ 323 (1096)
+..|+.++..... ......+....+...+ . +...+||||+++.-....-+.+...+.+ ...+++|+| +|...+
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchh
Confidence 9999988854332 1222233333343333 2 2345899999964321111122222221 123555544 333222
Q ss_pred --------hhhhcCCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHHHHh
Q 043647 324 --------VALTVGTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGGLL 389 (1096)
Q Consensus 324 --------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 389 (1096)
+...++ ...+..++.+.++-.+++..++-.....-.+..++-+|+.++..-|-.=.||.++-.+.
T Consensus 914 LperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 914 LPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred cchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 112222 13467799999999999999884322111222333333333333344445555544433
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.63 E-value=1.8e-09 Score=117.66 Aligned_cols=173 Identities=25% Similarity=0.390 Sum_probs=129.8
Q ss_pred cCCCCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceE
Q 043647 552 LPKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHL 631 (1096)
Q Consensus 552 ~~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L 631 (1096)
+..|..|..|.|..|.+..+|..+++|..|.||||+.|++..+|..++.|+ |+.|-+++ ++++.+|..|+.+..|.+|
T Consensus 94 ~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~l 171 (722)
T KOG0532|consen 94 ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHL 171 (722)
T ss_pred HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHh
Confidence 455666777888888888888888888888888888888888888887765 88888887 4788888888888888888
Q ss_pred EeccccccccCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCC
Q 043647 632 VVTYVDLIREMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSL 711 (1096)
Q Consensus 632 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L 711 (1096)
+.+.|. +..+|..++.|.+|+.|....... ...++.+. .-.|
T Consensus 172 d~s~ne-i~slpsql~~l~slr~l~vrRn~l------------------------------------~~lp~El~-~LpL 213 (722)
T KOG0532|consen 172 DVSKNE-IQSLPSQLGYLTSLRDLNVRRNHL------------------------------------EDLPEELC-SLPL 213 (722)
T ss_pred hhhhhh-hhhchHHhhhHHHHHHHHHhhhhh------------------------------------hhCCHHHh-CCce
Confidence 888887 777888888888887774211100 11222333 2357
Q ss_pred CeEEEeeeCCCCCCcccCCccccceeEEeecCCCCCCCCC----CCCCcCCcceeecccc
Q 043647 712 KELTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCTSLP----SLGLLGSLKNLTIKGM 767 (1096)
Q Consensus 712 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~----~l~~l~~L~~L~L~~~ 767 (1096)
..|++++|+...+|..|.. +..|++|.|.+|+. ++-| .-|...-.++|++.-|
T Consensus 214 i~lDfScNkis~iPv~fr~--m~~Lq~l~LenNPL-qSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 214 IRLDFSCNKISYLPVDFRK--MRHLQVLQLENNPL-QSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeecccCceeecchhhhh--hhhheeeeeccCCC-CCChHHHHhccceeeeeeecchhc
Confidence 7899999999999988876 89999999999875 3333 3456666778888776
No 40
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.58 E-value=6.1e-07 Score=102.51 Aligned_cols=177 Identities=22% Similarity=0.278 Sum_probs=104.9
Q ss_pred CccccchHHHHH---HHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHH
Q 043647 178 PAVFGRDEDKAK---ILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSI 254 (1096)
Q Consensus 178 ~~~vgr~~~~~~---l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 254 (1096)
.+++|++..+.. +.+++... ....+.++|++|+||||+|+.+++.... . |+.++......+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~-----~~~~ilL~GppGtGKTtLA~~ia~~~~~-~-----~~~l~a~~~~~~----- 75 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG-----RLSSMILWGPPGTGKTTLARIIAGATDA-P-----FEALSAVTSGVK----- 75 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC-----CCceEEEECCCCCCHHHHHHHHHHHhCC-C-----EEEEecccccHH-----
Confidence 358888877655 66666332 3557889999999999999999875322 1 222222111111
Q ss_pred HHhccCCCCCCCcHHHHHHHHHHH-hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEE--EcCchhhh--h-hc
Q 043647 255 LESITFSPNSLKDLNQIQVQLREA-VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILV--TTCSTDVA--L-TV 328 (1096)
Q Consensus 255 ~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~v~--~-~~ 328 (1096)
+...+....... ..+++.+|++|+++.-.....+.+...+. .|..++| ||.+.... . ..
T Consensus 76 ------------~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~ 140 (413)
T PRK13342 76 ------------DLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALL 140 (413)
T ss_pred ------------HHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHh
Confidence 111122222211 24678999999998766555666655443 2455555 34433211 1 11
Q ss_pred CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHH
Q 043647 329 GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLG 386 (1096)
Q Consensus 329 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 386 (1096)
.....+.+.+++.++.++++.+.+..... ....-..+....|++.++|.|..+..+.
T Consensus 141 SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 141 SRAQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred ccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 22367899999999999999886532111 0012234567789999999987665443
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.57 E-value=3e-08 Score=96.40 Aligned_cols=81 Identities=30% Similarity=0.415 Sum_probs=28.3
Q ss_pred CCCcceEEEecccccccCCCCcC-CCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccc-cCCCCCceE
Q 043647 554 KFTKLRVLSLKKYYITELPHSIG-DLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNL-RNLINLRHL 631 (1096)
Q Consensus 554 ~~~~Lr~L~L~~~~~~~lp~~i~-~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~l~~L~~L 631 (1096)
+..++|.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..+.+|++|++++| .+..++..+ ..+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCEE
Confidence 4556899999999988874 455 5789999999999999885 5778999999999985 788887666 468999999
Q ss_pred Eecccc
Q 043647 632 VVTYVD 637 (1096)
Q Consensus 632 ~l~~~~ 637 (1096)
++++|.
T Consensus 94 ~L~~N~ 99 (175)
T PF14580_consen 94 YLSNNK 99 (175)
T ss_dssp E-TTS-
T ss_pred ECcCCc
Confidence 998886
No 42
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.55 E-value=4.9e-09 Score=117.09 Aligned_cols=88 Identities=24% Similarity=0.161 Sum_probs=52.0
Q ss_pred hhhcCCCCcceEEEeccccccc-------CCCCcCCCCccceeeccccccc-ccccccccCCC---CcEEeccCcccCc-
Q 043647 549 SNLLPKFTKLRVLSLKKYYITE-------LPHSIGDLKHLRYINLSETMIR-CLPESICSLCN---LQFLILRGCYRLK- 616 (1096)
Q Consensus 549 ~~~~~~~~~Lr~L~L~~~~~~~-------lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~---L~~L~L~~~~~l~- 616 (1096)
...+...+.|+.|+++++.+.. ++..+..+.+|++|++++|.+. ..+..+..+.+ |++|++++|. +.
T Consensus 44 ~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~ 122 (319)
T cd00116 44 ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGD 122 (319)
T ss_pred HHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cch
Confidence 3445566667777777665542 2334556677777777777665 33444444444 7777777753 32
Q ss_pred ----ccCccccCC-CCCceEEecccc
Q 043647 617 ----KLPSNLRNL-INLRHLVVTYVD 637 (1096)
Q Consensus 617 ----~lp~~i~~l-~~L~~L~l~~~~ 637 (1096)
.++..+..+ ++|+.|++++|.
T Consensus 123 ~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 123 RGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred HHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 223344555 677777777765
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.55 E-value=2e-08 Score=100.63 Aligned_cols=34 Identities=9% Similarity=0.024 Sum_probs=18.9
Q ss_pred CCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeC
Q 043647 915 NTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWD 949 (1096)
Q Consensus 915 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 949 (1096)
+..|+.+++++ +.++.+.+++.-+|.++.|++++
T Consensus 283 Wq~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~ 316 (490)
T KOG1259|consen 283 WQELTELDLSG-NLITQIDESVKLAPKLRRLILSQ 316 (490)
T ss_pred Hhhhhhccccc-cchhhhhhhhhhccceeEEeccc
Confidence 44555555555 34555555555555566666555
No 44
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.55 E-value=6.2e-07 Score=94.97 Aligned_cols=153 Identities=23% Similarity=0.302 Sum_probs=93.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHH-HHHhCC
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQL-REAVAG 281 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~ 281 (1096)
.+.-.-+||++|+||||||+.+...... . |..++...+- ..++.++.+.- +....|
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~~~-~-----f~~~sAv~~g-----------------vkdlr~i~e~a~~~~~~g 103 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTTNA-A-----FEALSAVTSG-----------------VKDLREIIEEARKNRLLG 103 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhhCC-c-----eEEecccccc-----------------HHHHHHHHHHHHHHHhcC
Confidence 4667789999999999999999874322 2 2222222221 12223333333 233458
Q ss_pred CcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEE--EcCchhhhh---hcCCcceeeCCCCChHhHHHHHHHhhcCCC
Q 043647 282 KRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILV--TTCSTDVAL---TVGTAEYYNLKLLSDDDCWSVFVKHAFEKR 356 (1096)
Q Consensus 282 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~v~~---~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~ 356 (1096)
++.+|++|.|..-+..+.+.+ ||...+|.-|+| ||-++...- ......++.+++|+.++-.+++.+.+....
T Consensus 104 r~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~ 180 (436)
T COG2256 104 RRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEE 180 (436)
T ss_pred CceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhh
Confidence 999999999987655555555 444566777777 455543321 123447899999999999999988442211
Q ss_pred -CCC-CCc-chhHHHHHHHHHhCCCchh
Q 043647 357 -DVG-LHR-HMGSIRKKVVQKCRGLPLA 381 (1096)
Q Consensus 357 -~~~-~~~-~~~~~~~~i~~~~~g~PLa 381 (1096)
... ... -.+++...++..++|---+
T Consensus 181 rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 181 RGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred cCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 111 011 1234566788888887543
No 45
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.50 E-value=1.5e-07 Score=100.43 Aligned_cols=236 Identities=21% Similarity=0.219 Sum_probs=159.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCC
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGK 282 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 282 (1096)
..+.+.++|.|||||||++-.+.. .+..+-+.+.++.+..-.+...+.-.+...++....... .....+..+..++
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~---~~~~~~~~~~~~r 88 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGD---SAVDTLVRRIGDR 88 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHhhcccccccch---HHHHHHHHHHhhh
Confidence 358899999999999999988877 333244566677766666666666666666765543321 2233455666789
Q ss_pred cEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchhhhhhcCCcceeeCCCCChH-hHHHHHHHhhcCCC-CCCC
Q 043647 283 RFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTDVALTVGTAEYYNLKLLSDD-DCWSVFVKHAFEKR-DVGL 360 (1096)
Q Consensus 283 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~a~~~~-~~~~ 360 (1096)
|.++|+||.... ...-..+...+..+...-.|+.|+|..... .....+.+..|+.. ++.++|...+.... ....
T Consensus 89 r~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 89 RALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 999999998332 112222333444455566788898876443 45567888888765 79999988774322 2223
Q ss_pred CcchhHHHHHHHHHhCCCchhHHHHHHHhccCCCHHHHHHHHhhhcc------ccc--cCCChHHHHHHHHhcCchhhHH
Q 043647 361 HRHMGSIRKKVVQKCRGLPLAAETLGGLLRCKQSDDEWDEILNSKIW------YLS--EESNILPVLRLSYHHLPSHLKR 432 (1096)
Q Consensus 361 ~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~~~~~------~~~--~~~~i~~~l~~sy~~L~~~~k~ 432 (1096)
.........+|.+..+|.|++|...++..++- ...+-...++.... ... ........+.+||.-|..-.+-
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~ 243 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERA 243 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHH
Confidence 34456677899999999999999999988765 33333322222111 011 1355678999999999999999
Q ss_pred HhhhhcccCCCcccc
Q 043647 433 CFAYCAIFPKDYEFE 447 (1096)
Q Consensus 433 ~f~~~a~fp~~~~~~ 447 (1096)
.|..++.|...|...
T Consensus 244 ~~~rLa~~~g~f~~~ 258 (414)
T COG3903 244 LFGRLAVFVGGFDLG 258 (414)
T ss_pred Hhcchhhhhhhhccc
Confidence 999999998888765
No 46
>PRK06893 DNA replication initiation factor; Validated
Probab=98.50 E-value=8e-07 Score=92.58 Aligned_cols=154 Identities=16% Similarity=0.204 Sum_probs=95.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKR 283 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 283 (1096)
.+.+.|+|++|+|||+||+++++....+ ...+.|+++... ..... .+.+.++ +.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~-~~~~~y~~~~~~---~~~~~---------------------~~~~~~~-~~ 92 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLN-QRTAIYIPLSKS---QYFSP---------------------AVLENLE-QQ 92 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEeeHHHh---hhhhH---------------------HHHhhcc-cC
Confidence 3578999999999999999999864332 234556655311 00000 1111222 23
Q ss_pred EEEEEecCCCCC-hhhHHH-hhcccCCC-CCCcEEE-EEcCc---------hhhhhhcCCcceeeCCCCChHhHHHHHHH
Q 043647 284 FLIVLDDVWSKN-YSLWNT-LKSPFRAG-ASGSKIL-VTTCS---------TDVALTVGTAEYYNLKLLSDDDCWSVFVK 350 (1096)
Q Consensus 284 ~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~ii-vTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 350 (1096)
-+||+||+|... ...|+. +...+... ..|..+| +|+.. +++...+.....+++++++.++.++++.+
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 489999998642 244553 22223221 2355554 45543 45666666667899999999999999999
Q ss_pred hhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHHH
Q 043647 351 HAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGG 387 (1096)
Q Consensus 351 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 387 (1096)
.++..+ . .--.++..-|++.+.|..-++..+-.
T Consensus 173 ~a~~~~-l---~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 173 NAYQRG-I---ELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHcC-C---CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 886432 1 22346677889998887766554433
No 47
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.50 E-value=2.2e-07 Score=88.03 Aligned_cols=116 Identities=21% Similarity=0.252 Sum_probs=81.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccc----ccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHh
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVE----MFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAV 279 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 279 (1096)
.+++.|+|.+|+|||++++.+.++.... .-..++|+.+....+...+.+.++.+++.......+.+++...+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4789999999999999999999864321 124567999988889999999999999987666556777777777777
Q ss_pred CCCc-EEEEEecCCCC-ChhhHHHhhcccCCCCCCcEEEEEcCc
Q 043647 280 AGKR-FLIVLDDVWSK-NYSLWNTLKSPFRAGASGSKILVTTCS 321 (1096)
Q Consensus 280 ~~kr-~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~ 321 (1096)
...+ .+||+|+++.- ....++.+..... ..+.+||+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 6554 59999999655 4444555544333 456677776554
No 48
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.46 E-value=1.1e-07 Score=109.34 Aligned_cols=174 Identities=32% Similarity=0.427 Sum_probs=125.4
Q ss_pred CCCCcceEEEecccccccCCCCcCCCC-ccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceE
Q 043647 553 PKFTKLRVLSLKKYYITELPHSIGDLK-HLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHL 631 (1096)
Q Consensus 553 ~~~~~Lr~L~L~~~~~~~lp~~i~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L 631 (1096)
..++.+..|++.++.++.+|...+.+. +|++|++++|.+..+|..+..+++|+.|++++| .+..+|...+.+++|+.|
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhhe
Confidence 445789999999999999999888885 999999999999999999999999999999995 799999887899999999
Q ss_pred EeccccccccCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCC
Q 043647 632 VVTYVDLIREMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSL 711 (1096)
Q Consensus 632 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L 711 (1096)
++++|. +..+|..++.+..|++|....... + .....+....++
T Consensus 192 ~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~-----~-------------------------------~~~~~~~~~~~l 234 (394)
T COG4886 192 DLSGNK-ISDLPPEIELLSALEELDLSNNSI-----I-------------------------------ELLSSLSNLKNL 234 (394)
T ss_pred eccCCc-cccCchhhhhhhhhhhhhhcCCcc-----e-------------------------------ecchhhhhcccc
Confidence 999998 888888776677777774322210 0 011112222333
Q ss_pred CeEEEeeeCCCCCCcccCCccccceeEEeecCCCCCCCCCCCCCcCCcceeecccc
Q 043647 712 KELTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCTSLPSLGLLGSLKNLTIKGM 767 (1096)
Q Consensus 712 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~ 767 (1096)
..+.+.++....++.++.. +++++.|++++|. +..++.++.+.+|+.|++++.
T Consensus 235 ~~l~l~~n~~~~~~~~~~~--l~~l~~L~~s~n~-i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 235 SGLELSNNKLEDLPESIGN--LSNLETLDLSNNQ-ISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred cccccCCceeeeccchhcc--ccccceecccccc-ccccccccccCccCEEeccCc
Confidence 3444444444444444443 5567777777763 344555677777777777664
No 49
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=6.2e-06 Score=90.76 Aligned_cols=178 Identities=15% Similarity=0.211 Sum_probs=115.4
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccc----ccc-ccCcEEEEEe-cCccChHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDK----AVE-MFNLRSWVCV-SDDFDILRIT 251 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~-~f~~~~wv~~-~~~~~~~~~~ 251 (1096)
.+++|.+..++.+..++..+ .-.+...++|+.|+||||+|+.+++.. ... |+|...|... +.....++ .
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-I 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-H
Confidence 35789888899999988543 234677899999999999998888742 122 6676666442 12222222 1
Q ss_pred HHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchhhhhh--cC
Q 043647 252 KSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTDVALT--VG 329 (1096)
Q Consensus 252 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~--~~ 329 (1096)
+++.+.+... -..+++-++|+|+++.-+...++.+...+..-..++.+|++|.+.+.... ..
T Consensus 79 r~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 79 RNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred HHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 1222222111 11356667788888766667899998888877778898888876543211 12
Q ss_pred CcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHH
Q 043647 330 TAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAET 384 (1096)
Q Consensus 330 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 384 (1096)
....+.+.+++.++....+.+...+ ...+.+..++..++|.|.-+..
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKYND--------IKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHhcC--------CCHHHHHHHHHHcCCCHHHHHH
Confidence 2367899999999998877654311 1123466789999999865543
No 50
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=8.5e-06 Score=89.98 Aligned_cols=205 Identities=15% Similarity=0.150 Sum_probs=128.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCc-EEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNL-RSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
..+.+|+++++++...|...-.+ ....-+.|+|..|+|||+.++.+.+......-.. +++|++....+..+++..|+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~-~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRG-ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcC-CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 34889999999999887543322 2233489999999999999999998765542222 899999999999999999999
Q ss_pred hccCCCCCCCcHHHHHHHHHHHh--CCCcEEEEEecCCCCChhhHHHhhcccCCCCC-CcEE--EEEcCchhhhhhc---
Q 043647 257 SITFSPNSLKDLNQIQVQLREAV--AGKRFLIVLDDVWSKNYSLWNTLKSPFRAGAS-GSKI--LVTTCSTDVALTV--- 328 (1096)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~-gs~i--ivTtR~~~v~~~~--- 328 (1096)
+++..+.......+....+.+.+ .++.+++|||+++.-....-+.+...+..... .++| |..+-+......+
T Consensus 96 ~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~r 175 (366)
T COG1474 96 KLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPR 175 (366)
T ss_pred HcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhh
Confidence 99755444455556666666666 46899999999964321111222222222221 3443 3334433332222
Q ss_pred -----CCcceeeCCCCChHhHHHHHHHhhcCC-CCCCCCcchhHHHHHHHHHhCC-CchhHHH
Q 043647 329 -----GTAEYYNLKLLSDDDCWSVFVKHAFEK-RDVGLHRHMGSIRKKVVQKCRG-LPLAAET 384 (1096)
Q Consensus 329 -----~~~~~~~l~~L~~~~~~~lf~~~a~~~-~~~~~~~~~~~~~~~i~~~~~g-~PLai~~ 384 (1096)
+. ..+..++-+.+|-...+..++-.. .+....+...+++..++..-+| -=.||.+
T Consensus 176 v~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidi 237 (366)
T COG1474 176 VKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDI 237 (366)
T ss_pred hhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHH
Confidence 22 237788999999999998877321 1222334444444445555554 3344443
No 51
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=1e-05 Score=90.75 Aligned_cols=191 Identities=16% Similarity=0.192 Sum_probs=111.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.+++|.+..++.+.+.+.... -.+.+.++|+.|+||||+|+.+++..... ... ..+...-....++..
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~ 84 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEK 84 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhc
Confidence 468999999999998885432 24567899999999999999988753211 000 000000011111111
Q ss_pred hcc-----CCCCCCCcHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchh-hhh
Q 043647 257 SIT-----FSPNSLKDLNQIQVQLREA----VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTD-VAL 326 (1096)
Q Consensus 257 ~l~-----~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~ 326 (1096)
... .........++....+... ..+++-++|+|+++.-....++.+...+.......++|++|.+.. +..
T Consensus 85 ~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~ 164 (363)
T PRK14961 85 GLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPK 164 (363)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhH
Confidence 100 0000001122222221111 134566999999987765667777777665555667777665433 322
Q ss_pred hc-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHH
Q 043647 327 TV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAE 383 (1096)
Q Consensus 327 ~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 383 (1096)
.+ +....+++.+++.++..+.+...+-..+ . .-..+.+..|++.++|.|-.+.
T Consensus 165 tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g-~---~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 165 TILSRCLQFKLKIISEEKIFNFLKYILIKES-I---DTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HHHhhceEEeCCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHH
Confidence 21 2235799999999999988877663221 1 1233566789999999885433
No 52
>PF13173 AAA_14: AAA domain
Probab=98.39 E-value=1.1e-06 Score=82.45 Aligned_cols=119 Identities=21% Similarity=0.184 Sum_probs=78.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcE
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKRF 284 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 284 (1096)
+++.|.|+.|+||||++++++++.. ....++++++.+....... +.+ ..+.+.+....++.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~--~~~~~~yi~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~~~ 63 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL--PPENILYINFDDPRDRRLA----------------DPD-LLEYFLELIKPGKK 63 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc--ccccceeeccCCHHHHHHh----------------hhh-hHHHHHHhhccCCc
Confidence 6899999999999999999987643 2245667765544221100 000 22334444445788
Q ss_pred EEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchhhhhhc------CCcceeeCCCCChHhH
Q 043647 285 LIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTDVALTV------GTAEYYNLKLLSDDDC 344 (1096)
Q Consensus 285 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~------~~~~~~~l~~L~~~~~ 344 (1096)
+|+||++... ..|......+.+.....+|++|+........- +....+++.||+..|.
T Consensus 64 ~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 64 YIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred EEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 9999999766 56777777766655667999999877665331 2224688999998774
No 53
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.37 E-value=1.7e-08 Score=110.20 Aligned_cols=179 Identities=25% Similarity=0.322 Sum_probs=142.3
Q ss_pred CCCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceEEe
Q 043647 554 KFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLVV 633 (1096)
Q Consensus 554 ~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l 633 (1096)
.+..-...|++.|.+..+|..++.+..|..|.|..|.|..+|+.+++|..|.+|||+.| .+..+|..++.|+ |+.|.+
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEE
Confidence 34455668999999999999999999999999999999999999999999999999994 8999999999886 899999
Q ss_pred ccccccccCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCCe
Q 043647 634 TYVDLIREMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKE 713 (1096)
Q Consensus 634 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 713 (1096)
++|+ ++.+|.+|+.+.+|..|+...+.. ......++.+..|+.
T Consensus 151 sNNk-l~~lp~~ig~~~tl~~ld~s~nei------------------------------------~slpsql~~l~slr~ 193 (722)
T KOG0532|consen 151 SNNK-LTSLPEEIGLLPTLAHLDVSKNEI------------------------------------QSLPSQLGYLTSLRD 193 (722)
T ss_pred ecCc-cccCCcccccchhHHHhhhhhhhh------------------------------------hhchHHhhhHHHHHH
Confidence 9887 899999999777777775321110 112333455667788
Q ss_pred EEEeeeCCCCCCcccCCccccceeEEeecCCCCCCCCC-CCCCcCCcceeecccccceeEeccc
Q 043647 714 LTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCTSLP-SLGLLGSLKNLTIKGMRRLKSIGFE 776 (1096)
Q Consensus 714 L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~ 776 (1096)
|++..|....+|....+ -.|..|+++.| .+..+| .+.+|..|++|-|.++ -++..+.+
T Consensus 194 l~vrRn~l~~lp~El~~---LpLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenN-PLqSPPAq 252 (722)
T KOG0532|consen 194 LNVRRNHLEDLPEELCS---LPLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENN-PLQSPPAQ 252 (722)
T ss_pred HHHhhhhhhhCCHHHhC---CceeeeecccC-ceeecchhhhhhhhheeeeeccC-CCCCChHH
Confidence 88888888889987653 35888898876 456777 6899999999999864 34444433
No 54
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.37 E-value=5.5e-06 Score=82.17 Aligned_cols=180 Identities=16% Similarity=0.205 Sum_probs=93.7
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHH
Q 043647 177 EPAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 177 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
-.+|||.++-+..+.-++...........-+-+||++|+||||||..++++.... | .+++... .
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~-~---~~~sg~~-i----------- 86 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN-F---KITSGPA-I----------- 86 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT---E---EEEECCC-------------
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC-e---Eeccchh-h-----------
Confidence 3579999988877654443211122346788999999999999999999865442 2 1222111 0
Q ss_pred hccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCC--------CC-----------CcEEEE
Q 043647 257 SITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAG--------AS-----------GSKILV 317 (1096)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~--------~~-----------gs~iiv 317 (1096)
....++...+.. + +++-+|++|.+..-+...-+.+..++.++ +. -+-|=.
T Consensus 87 ---------~k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligA 155 (233)
T PF05496_consen 87 ---------EKAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGA 155 (233)
T ss_dssp ----------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEE
T ss_pred ---------hhHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeee
Confidence 011122222221 2 24457777888765543333333322211 11 134556
Q ss_pred EcCchhhhhhcCCc--ceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHHH
Q 043647 318 TTCSTDVALTVGTA--EYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGG 387 (1096)
Q Consensus 318 TtR~~~v~~~~~~~--~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 387 (1096)
|||...+...+... -..+++..+.+|-.++..+.+..-+ -+-..+.+.+|++.+.|-|--+.-+-.
T Consensus 156 TTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~----i~i~~~~~~~Ia~rsrGtPRiAnrll~ 223 (233)
T PF05496_consen 156 TTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN----IEIDEDAAEEIARRSRGTPRIANRLLR 223 (233)
T ss_dssp ESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHH
T ss_pred eccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC----CCcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 78875554443322 2357999999999999988773211 234457889999999999955444333
No 55
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=2e-06 Score=99.28 Aligned_cols=193 Identities=18% Similarity=0.160 Sum_probs=113.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.+++|.+..++.|..++.... -...+.++|++|+||||+|+.+++..... .+...+|++.+.. .+.......+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv~ 88 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDVL 88 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCceE
Confidence 368999998888888885432 24567999999999999999888764322 2222333322110 00000000000
Q ss_pred hccCCCCCCCcHHHHHHHHHHH-----hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCc-hhhhhhc-C
Q 043647 257 SITFSPNSLKDLNQIQVQLREA-----VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCS-TDVALTV-G 329 (1096)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~-~ 329 (1096)
.+... +....+.+.. +.+. ..+++-++|+|+++......++.+...+......+.+|++|.. ..+...+ .
T Consensus 89 el~~~--~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 89 EIDAA--SNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred Eeccc--ccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc
Confidence 11111 1112222222 2222 2356779999999877666788887777655455565555543 3332222 2
Q ss_pred CcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhH
Q 043647 330 TAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAA 382 (1096)
Q Consensus 330 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 382 (1096)
....+++.+++.++..+.+.+.+-..+ . .-..+....|++.++|.+--+
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~eg-i---~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEG-R---EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHH
Confidence 235799999999999999988774322 1 123456788999999988544
No 56
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.1e-07 Score=100.97 Aligned_cols=92 Identities=17% Similarity=0.151 Sum_probs=51.7
Q ss_pred ccCCCCCCCeEEEeeeCCCCCCcccCCccccceeEEeecCCCCCC--CCCCCCCcCCcceeecccccceeEecccccCC-
Q 043647 704 MLQPHRSLKELTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCT--SLPSLGLLGSLKNLTIKGMRRLKSIGFEIYGE- 780 (1096)
Q Consensus 704 ~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~--~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~- 780 (1096)
.+..+++|+.|.+.+|... +-.......+..|+.|+|++|+... ..+..+.+|+|..|.++.+ .+.++..--.+.
T Consensus 217 ~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~ 294 (505)
T KOG3207|consen 217 ILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESL 294 (505)
T ss_pred HHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCCccch
Confidence 3444567777777776411 1111111236778888888886654 3456788888888888764 344332111111
Q ss_pred CCCCCCCCCceecccCC
Q 043647 781 GCSKPFQALETLCFEDL 797 (1096)
Q Consensus 781 ~~~~~~~~L~~L~l~~~ 797 (1096)
.....|++|+.|.+...
T Consensus 295 ~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 295 DKTHTFPKLEYLNISEN 311 (505)
T ss_pred hhhcccccceeeecccC
Confidence 11244677777776553
No 57
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.33 E-value=4.7e-07 Score=88.09 Aligned_cols=107 Identities=30% Similarity=0.325 Sum_probs=55.4
Q ss_pred CCCcceEEEecccccccCCCCcCCCCccceeeccccccccccccc-ccCCCCcEEeccCcccCcccCc--cccCCCCCce
Q 043647 554 KFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESI-CSLCNLQFLILRGCYRLKKLPS--NLRNLINLRH 630 (1096)
Q Consensus 554 ~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~ 630 (1096)
.+.+|++|++++|.|+.++ .+..+++|+.|++++|.|+.+++.+ ..+++|++|++++| .+..+-. .+..+++|++
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp T-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--E
T ss_pred hhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcce
Confidence 5789999999999999985 5888999999999999999997666 46999999999995 6666543 3678999999
Q ss_pred EEeccccccccCcc----cCCCCCCCCcCCceEeccc
Q 043647 631 LVVTYVDLIREMPL----GIKELKCLQMLSNFIVGMV 663 (1096)
Q Consensus 631 L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~~~~ 663 (1096)
|++.+|. +...+. -+..+++|+.|+...+...
T Consensus 118 L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ 153 (175)
T PF14580_consen 118 LSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVTEE 153 (175)
T ss_dssp EE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETTS-
T ss_pred eeccCCc-ccchhhHHHHHHHHcChhheeCCEEccHH
Confidence 9999998 444432 2677899999987666543
No 58
>PTZ00202 tuzin; Provisional
Probab=98.32 E-value=2.3e-05 Score=84.82 Aligned_cols=169 Identities=14% Similarity=0.196 Sum_probs=103.6
Q ss_pred CCCCCCccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHH
Q 043647 173 CLPTEPAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITK 252 (1096)
Q Consensus 173 ~~~~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 252 (1096)
.+++.+.|+||+++..++...|...+. ...+++.|.|++|+|||||++.+..... ..+++ .+..+..++++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~--~~privvLtG~~G~GKTTLlR~~~~~l~-----~~qL~--vNprg~eElLr 327 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT--AHPRIVVFTGFRGCGKSSLCRSAVRKEG-----MPAVF--VDVRGTEDTLR 327 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC--CCceEEEEECCCCCCHHHHHHHHHhcCC-----ceEEE--ECCCCHHHHHH
Confidence 345567899999999999998854332 2356999999999999999999886432 11222 22227799999
Q ss_pred HHHHhccCCCCCCC--cHHHHHHHHHHHh-C-CCcEEEEEecCCCCCh-hhHHHhhcccCCCCCCcEEEEEcCchhhhhh
Q 043647 253 SILESITFSPNSLK--DLNQIQVQLREAV-A-GKRFLIVLDDVWSKNY-SLWNTLKSPFRAGASGSKILVTTCSTDVALT 327 (1096)
Q Consensus 253 ~i~~~l~~~~~~~~--~~~~~~~~l~~~l-~-~kr~LlVlDdv~~~~~-~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 327 (1096)
.++.+++....... -.+.+.+.+.+.- . |++.+||+-=-...+. ..+.+.. .+.....-|+|++---.+.....
T Consensus 328 ~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 328 SVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred HHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchh
Confidence 99999997433221 1233444443322 3 7788888754322211 1122211 23333456788876544333211
Q ss_pred cC---CcceeeCCCCChHhHHHHHHHh
Q 043647 328 VG---TAEYYNLKLLSDDDCWSVFVKH 351 (1096)
Q Consensus 328 ~~---~~~~~~l~~L~~~~~~~lf~~~ 351 (1096)
.. .-..|-++.++.++|.+.....
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhc
Confidence 11 1246889999999998876543
No 59
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.31 E-value=5.9e-06 Score=86.72 Aligned_cols=169 Identities=14% Similarity=0.143 Sum_probs=97.7
Q ss_pred chHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCC
Q 043647 183 RDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSP 262 (1096)
Q Consensus 183 r~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 262 (1096)
.+..++++.+++.. ...+.+.|+|+.|+|||++|+.+++.... .....++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~-----~~~~~lll~G~~G~GKT~la~~~~~~~~~-~~~~~~~i~~~~~~~------~~-------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAG-----KGDRFLYLWGESGSGKSHLLQAACAAAEE-RGKSAIYLPLAELAQ------AD-------- 81 (226)
T ss_pred cHHHHHHHHHHHhc-----CCCCeEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEeHHHHHH------hH--------
Confidence 44566666666532 23468899999999999999999875432 222345555432211 00
Q ss_pred CCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChh-hHH-HhhcccCC-CCCCcEEEEEcCchh---------hhhhcCC
Q 043647 263 NSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYS-LWN-TLKSPFRA-GASGSKILVTTCSTD---------VALTVGT 330 (1096)
Q Consensus 263 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-~~~-~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~ 330 (1096)
. .+.+.+++ .-+||+||++..... .|. .+...+.. ...+.++|+||+... +...+..
T Consensus 82 ------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~ 150 (226)
T TIGR03420 82 ------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAW 150 (226)
T ss_pred ------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhc
Confidence 0 11111222 238999999764322 233 33333322 123457888887532 1222222
Q ss_pred cceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHH
Q 043647 331 AEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLG 386 (1096)
Q Consensus 331 ~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 386 (1096)
...+.+.+++.++-..++...+-... . +--.+..+.|++.+.|.|..+.-+.
T Consensus 151 ~~~i~l~~l~~~e~~~~l~~~~~~~~-~---~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 151 GLVFQLPPLSDEEKIAALQSRAARRG-L---QLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred CeeEecCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 45789999999998998877652211 1 1223556777888888887766554
No 60
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.31 E-value=1.3e-06 Score=90.96 Aligned_cols=89 Identities=18% Similarity=0.122 Sum_probs=63.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCc--cChHHHHHHHHHhccCCCCCCCcHH------HHHHHH
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDD--FDILRITKSILESITFSPNSLKDLN------QIQVQL 275 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~l 275 (1096)
-..++|+|++|+|||||++.+|++....+|+.++|+.+... .++.++++.+...+-....+..... ......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 45789999999999999999999876668999999997776 7899999999444333222211111 112222
Q ss_pred HHH-hCCCcEEEEEecCC
Q 043647 276 REA-VAGKRFLIVLDDVW 292 (1096)
Q Consensus 276 ~~~-l~~kr~LlVlDdv~ 292 (1096)
..+ -+|+++++++|++.
T Consensus 96 ~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 96 KRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHCCCCEEEEEECHH
Confidence 222 35899999999994
No 61
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.31 E-value=1.6e-05 Score=89.41 Aligned_cols=196 Identities=16% Similarity=0.122 Sum_probs=109.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccC-cEEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFN-LRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.+++|+++.++.+..++..+ ..+.+.++|+.|+||||+|+.+.+......+. ..+.+++++-.+ .....+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~-----~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~--~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP-----NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFD--QGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhh--cchhhhhc
Confidence 46889999999999888432 23467899999999999999988754322222 233444332110 00000000
Q ss_pred ------hccCC-CCCCCcHHHHHHHHHHHh-----CCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchh-
Q 043647 257 ------SITFS-PNSLKDLNQIQVQLREAV-----AGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTD- 323 (1096)
Q Consensus 257 ------~l~~~-~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~- 323 (1096)
.++.. .......+.....++... .+.+-+||+||+..-.......+...+......+++|+||....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 00000 000011222222222221 23455899999976544445555555544444567887775432
Q ss_pred hhhhc-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHH
Q 043647 324 VALTV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAET 384 (1096)
Q Consensus 324 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 384 (1096)
+...+ .....+.+.+++.++..+.+.+.+-..+ . .-..+....+++.++|.+-.+..
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~-~---~~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEG-V---DYDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 22211 2235688899999999888887663222 1 12345677889999887655443
No 62
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.3e-05 Score=92.40 Aligned_cols=192 Identities=16% Similarity=0.181 Sum_probs=114.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
.+++|.+..+..|..++.... -.+.+.++|+.|+||||+|+.+++..... -|+.. .+.+.-...+.+...
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr----l~HAyLF~GPpGvGKTTlAriLAK~LnC~-----~~~~~-~pCg~C~sC~~I~~g 84 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR----LHHAYLFTGTRGVGKTTIARILAKCLNCE-----TGVTS-TPCEVCATCKAVNEG 84 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHhCCC-----cCCCC-CCCccCHHHHHHhcC
Confidence 468999999999999985432 24678999999999999999888743211 11110 011111111111110
Q ss_pred cc-----CCCCCCCcHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchh-hhhh
Q 043647 258 IT-----FSPNSLKDLNQIQVQLREA----VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTD-VALT 327 (1096)
Q Consensus 258 l~-----~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~ 327 (1096)
-. ....+....+++...+... ..+++-++|+|+|..-+...++.+...+.....+.++|++|.+.. +...
T Consensus 85 ~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~T 164 (702)
T PRK14960 85 RFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPIT 164 (702)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHH
Confidence 00 0000111233333222211 246777999999987766677777777665555667777776543 2211
Q ss_pred -cCCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHH
Q 043647 328 -VGTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAE 383 (1096)
Q Consensus 328 -~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 383 (1096)
......+++++++.++..+.+.+.+-..+ . .-..+....|++.++|.+-.+.
T Consensus 165 IlSRCq~feFkpLs~eEI~k~L~~Il~kEg-I---~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 165 VISRCLQFTLRPLAVDEITKHLGAILEKEQ-I---AADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHHhhheeeccCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHH
Confidence 13336799999999999888877663322 1 2234566789999999774443
No 63
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.2e-05 Score=95.63 Aligned_cols=193 Identities=16% Similarity=0.188 Sum_probs=114.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.+++|.+..+..|.+++.... -...+.++|+.|+||||+|+.+++..... ..+. .....-.....+..
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~-------~pCg~C~sC~~i~~ 84 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTA-------TPCGVCSSCVEIAQ 84 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCC-------CCCCCchHHHHHhc
Confidence 468999999999999885432 24556899999999999999998754321 1000 00000000111111
Q ss_pred -------hccCC-CCCCCcHHHHHHHHHHH-hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCch-hhhh
Q 043647 257 -------SITFS-PNSLKDLNQIQVQLREA-VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCST-DVAL 326 (1096)
Q Consensus 257 -------~l~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~ 326 (1096)
.+... ....++..++...+... ..+++-++|||++..-....++.++..+-......++|++|.+. .+..
T Consensus 85 g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~ 164 (944)
T PRK14949 85 GRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (944)
T ss_pred CCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchH
Confidence 01100 01111222222222211 24778899999998877777888877776544556666665543 3322
Q ss_pred h-cCCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHH
Q 043647 327 T-VGTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETL 385 (1096)
Q Consensus 327 ~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 385 (1096)
. ......|++++++.++..+.+.+.+-..+ .....+....|++.++|.|--+..+
T Consensus 165 TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg----I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 165 TVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ----LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred HHHHhheEEeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 12236799999999999988877663211 1223456788999999988544433
No 64
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.30 E-value=1.2e-06 Score=88.90 Aligned_cols=51 Identities=24% Similarity=0.393 Sum_probs=34.2
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc
Q 043647 179 AVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE 231 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 231 (1096)
.|+||+++.+++...+. .......+.+.|+|.+|+|||+|+++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~--~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD--AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTG--GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 38999999999999994 2223456899999999999999999988865543
No 65
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.27 E-value=6.6e-06 Score=79.92 Aligned_cols=125 Identities=16% Similarity=0.104 Sum_probs=72.1
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccC
Q 043647 181 FGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITF 260 (1096)
Q Consensus 181 vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 260 (1096)
+|++..+..+...+... ..+.+.|+|++|+|||++|+.+++..... -..++++.+............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~-----~~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~--- 71 (151)
T cd00009 1 VGQEEAIEALREALELP-----PPKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASDLLEGLVVAELFGHF--- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC-----CCCeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEehhhhhhhhHHHHHhhhh---
Confidence 47888899998888442 24678999999999999999999864321 2345666654433322211111100
Q ss_pred CCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhh---HHHhhcccCCC---CCCcEEEEEcCchh
Q 043647 261 SPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSL---WNTLKSPFRAG---ASGSKILVTTCSTD 323 (1096)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~---~~~l~~~l~~~---~~gs~iivTtR~~~ 323 (1096)
............++.++|+||++...... +..+...+... ..+..||+||....
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 00111122234567899999997532222 22222222221 35778888887653
No 66
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.26 E-value=1.7e-05 Score=94.51 Aligned_cols=202 Identities=18% Similarity=0.186 Sum_probs=119.5
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-cc---CcEEEEEecCc---cChHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MF---NLRSWVCVSDD---FDILRI 250 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f---~~~~wv~~~~~---~~~~~~ 250 (1096)
++++|++..+..+.+.+... ....+.|+|++|+||||+|+.+++..... .+ ...-|+.+... .+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~-----~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i 228 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP-----FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV 228 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC-----CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH
Confidence 46899999999988777322 24579999999999999999998764332 22 12345544321 122222
Q ss_pred HHHH---------------HHhccCCC----------------CCCCc-HHHHHHHHHHHhCCCcEEEEEecCCCCChhh
Q 043647 251 TKSI---------------LESITFSP----------------NSLKD-LNQIQVQLREAVAGKRFLIVLDDVWSKNYSL 298 (1096)
Q Consensus 251 ~~~i---------------~~~l~~~~----------------~~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~ 298 (1096)
...+ +...+... ++... ....+..+.+.++.+++.++-|+.|..+...
T Consensus 229 ~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~ 308 (615)
T TIGR02903 229 TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNV 308 (615)
T ss_pred hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCccc
Confidence 1111 11111100 01111 1235677888888999999988888776677
Q ss_pred HHHhhcccCCCCCCcEEEE--EcCchhhh-hhc-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHH
Q 043647 299 WNTLKSPFRAGASGSKILV--TTCSTDVA-LTV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQK 374 (1096)
Q Consensus 299 ~~~l~~~l~~~~~gs~iiv--TtR~~~v~-~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~ 374 (1096)
|+.+...+....+...|+| ||++.... ..+ .....+.+.+++.+|.++++.+.+-... .. -..++.+.|.+.
T Consensus 309 ~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~-v~---ls~eal~~L~~y 384 (615)
T TIGR02903 309 PKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKIN-VH---LAAGVEELIARY 384 (615)
T ss_pred chhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHC
Confidence 8888777666655555555 56654321 111 1224678899999999999998763211 11 113444555555
Q ss_pred hCCCchhHHHHHHH
Q 043647 375 CRGLPLAAETLGGL 388 (1096)
Q Consensus 375 ~~g~PLai~~~~~~ 388 (1096)
...-+-|+..++..
T Consensus 385 s~~gRraln~L~~~ 398 (615)
T TIGR02903 385 TIEGRKAVNILADV 398 (615)
T ss_pred CCcHHHHHHHHHHH
Confidence 54445566555443
No 67
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.25 E-value=1.4e-05 Score=98.60 Aligned_cols=260 Identities=13% Similarity=0.196 Sum_probs=152.8
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc--ccCcEEEEEecCcc---ChHHHHHHH
Q 043647 180 VFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE--MFNLRSWVCVSDDF---DILRITKSI 254 (1096)
Q Consensus 180 ~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~f~~~~wv~~~~~~---~~~~~~~~i 254 (1096)
++||+.+++.|...+-.-. .+...++.+.|..|||||+++++|......+ .|-...+-....+. ...+.++++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~--~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l 79 (849)
T COG3899 2 LYGRETELAQLLAAFDRVS--KGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDL 79 (849)
T ss_pred CCchHhHHHHHHHHHHHHh--CCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHH
Confidence 6899999999998885432 3445699999999999999999998753322 11111111111111 122333344
Q ss_pred HHhc-------------------cCCCC--------------------C--CCcHHH-----HHHHHHHHh-CCCcEEEE
Q 043647 255 LESI-------------------TFSPN--------------------S--LKDLNQ-----IQVQLREAV-AGKRFLIV 287 (1096)
Q Consensus 255 ~~~l-------------------~~~~~--------------------~--~~~~~~-----~~~~l~~~l-~~kr~LlV 287 (1096)
+.++ +.... + ....+. .+..+.... +.|+.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 3333 11110 0 000011 122223333 46699999
Q ss_pred EecCCCCChhhHHHhhcccCCCC----CCcEEEE--EcCch--hhhhhcCCcceeeCCCCChHhHHHHHHHhhcCCCCCC
Q 043647 288 LDDVWSKNYSLWNTLKSPFRAGA----SGSKILV--TTCST--DVALTVGTAEYYNLKLLSDDDCWSVFVKHAFEKRDVG 359 (1096)
Q Consensus 288 lDdv~~~~~~~~~~l~~~l~~~~----~gs~iiv--TtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~ 359 (1096)
+||+.-.+....+-+........ .-..|.. |.+.. .+.........+.+.||+..+...+........
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~---- 235 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT---- 235 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc----
Confidence 99996655444443332222111 0112332 33322 222222334679999999999999998777321
Q ss_pred CCcchhHHHHHHHHHhCCCchhHHHHHHHhccC------CCHHHHHHHHhhhccccccCCChHHHHHHHHhcCchhhHHH
Q 043647 360 LHRHMGSIRKKVVQKCRGLPLAAETLGGLLRCK------QSDDEWDEILNSKIWYLSEESNILPVLRLSYHHLPSHLKRC 433 (1096)
Q Consensus 360 ~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~------~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~ 433 (1096)
.....+....|+++..|+|+=+.-+-..+... .+...|..-.... ...+..+.+...+..-.+.||...|..
T Consensus 236 -~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i-~~~~~~~~vv~~l~~rl~kL~~~t~~V 313 (849)
T COG3899 236 -KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL-GILATTDAVVEFLAARLQKLPGTTREV 313 (849)
T ss_pred -ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc-CCchhhHHHHHHHHHHHhcCCHHHHHH
Confidence 23345678899999999999999888877653 2333444222111 111111235556888999999999999
Q ss_pred hhhhcccCCCcccc
Q 043647 434 FAYCAIFPKDYEFE 447 (1096)
Q Consensus 434 f~~~a~fp~~~~~~ 447 (1096)
+...|++-..++.+
T Consensus 314 l~~AA~iG~~F~l~ 327 (849)
T COG3899 314 LKAAACIGNRFDLD 327 (849)
T ss_pred HHHHHHhCccCCHH
Confidence 99999998888776
No 68
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.24 E-value=1.9e-07 Score=93.77 Aligned_cols=137 Identities=23% Similarity=0.229 Sum_probs=95.4
Q ss_pred cCCCCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceE
Q 043647 552 LPKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHL 631 (1096)
Q Consensus 552 ~~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L 631 (1096)
....+.|..|||++|.|+.+..++.-++.+|+|++|+|.|..+.. +..|++|+.|||++| .+.++--.-.+|-|.++|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeee
Confidence 345677888999999998888888888899999999998887754 788899999999985 566665444678888888
Q ss_pred EeccccccccCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCC
Q 043647 632 VVTYVDLIREMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSL 711 (1096)
Q Consensus 632 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L 711 (1096)
.+++|. +..+ .++++|-+|..|+. .++.....+....++.++.|
T Consensus 358 ~La~N~-iE~L-SGL~KLYSLvnLDl----------------------------------~~N~Ie~ldeV~~IG~LPCL 401 (490)
T KOG1259|consen 358 KLAQNK-IETL-SGLRKLYSLVNLDL----------------------------------SSNQIEELDEVNHIGNLPCL 401 (490)
T ss_pred ehhhhh-Hhhh-hhhHhhhhheeccc----------------------------------cccchhhHHHhcccccccHH
Confidence 888876 4443 35556655555532 11222223344455666777
Q ss_pred CeEEEeeeCCCCCCc
Q 043647 712 KELTVKCYGGTVFPS 726 (1096)
Q Consensus 712 ~~L~l~~~~~~~~p~ 726 (1096)
+.+.+.+|....+|.
T Consensus 402 E~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 402 ETLRLTGNPLAGSVD 416 (490)
T ss_pred HHHhhcCCCccccch
Confidence 777777777666554
No 69
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=2.1e-05 Score=91.78 Aligned_cols=193 Identities=18% Similarity=0.203 Sum_probs=115.5
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.+++|.+..++.|.+++.... -.+.+.++|..|+||||+|+.+.+..... .++ +.....-...+.|..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~~ 84 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREIDE 84 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHhc
Confidence 468999999999999985432 24566799999999999998887753221 110 011111111222211
Q ss_pred h-----ccCCCCCCCcHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchhhhh-
Q 043647 257 S-----ITFSPNSLKDLNQIQVQLREA----VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTDVAL- 326 (1096)
Q Consensus 257 ~-----l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~- 326 (1096)
. +.....+....+++...+... ..++.-++|||+++..+...|+.+...+..-....++|+||.+..-..
T Consensus 85 G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~ 164 (830)
T PRK07003 85 GRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPV 164 (830)
T ss_pred CCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccc
Confidence 0 000001111233333333221 235566899999988777778888877765555778888777654321
Q ss_pred hc-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCc-hhHHHH
Q 043647 327 TV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLP-LAAETL 385 (1096)
Q Consensus 327 ~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~ 385 (1096)
.+ .....+.++.++.++..+.+.+.+...+ . .-..+....|++.++|.. -|+..+
T Consensus 165 TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg-I---~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 165 TVLSRCLQFNLKQMPAGHIVSHLERILGEER-I---AFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred hhhhheEEEecCCcCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 2235799999999999998887763221 1 123456678999998865 455443
No 70
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.23 E-value=1.3e-06 Score=69.51 Aligned_cols=56 Identities=30% Similarity=0.517 Sum_probs=37.6
Q ss_pred cceEEEecccccccCC-CCcCCCCccceeeccccccccccc-ccccCCCCcEEeccCc
Q 043647 557 KLRVLSLKKYYITELP-HSIGDLKHLRYINLSETMIRCLPE-SICSLCNLQFLILRGC 612 (1096)
Q Consensus 557 ~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~ 612 (1096)
+|++|++++|.++.+| ..|.++++|++|++++|.++.+|+ .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 5667777777777665 455667777777777777766643 5666777777777665
No 71
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.23 E-value=2.8e-06 Score=91.67 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=67.7
Q ss_pred HHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCcc--ChHHHHHHHHHhccCCCCCCC
Q 043647 189 KILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDF--DILRITKSILESITFSPNSLK 266 (1096)
Q Consensus 189 ~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~ 266 (1096)
++++.+..- ++-....|+|++|+||||||+.+|++....+|+.++||.+.+.. ++.++++.+...+-....+..
T Consensus 158 rvID~l~PI----GkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~ 233 (416)
T PRK09376 158 RIIDLIAPI----GKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEP 233 (416)
T ss_pred eeeeeeccc----ccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCC
Confidence 455555432 23356899999999999999999998766689999999999887 788888888743332222211
Q ss_pred cHHHH-----HHHHHHH--hCCCcEEEEEecCC
Q 043647 267 DLNQI-----QVQLREA--VAGKRFLIVLDDVW 292 (1096)
Q Consensus 267 ~~~~~-----~~~l~~~--l~~kr~LlVlDdv~ 292 (1096)
..... .-...++ -.|++++|++|++.
T Consensus 234 ~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 234 AERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 11111 1111122 36899999999994
No 72
>PLN03025 replication factor C subunit; Provisional
Probab=98.22 E-value=2.5e-05 Score=86.23 Aligned_cols=182 Identities=13% Similarity=0.157 Sum_probs=104.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccC-cEEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFN-LRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.+++|.++.++.|..++... ..+.+.++|++|+||||+|+.+++......|. .++-++.++..+.. ..++++.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~-----~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~-~vr~~i~ 86 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG-----NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGID-VVRNKIK 86 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHH-HHHHHHH
Confidence 35789888888888776432 23457799999999999999988764222221 11112222221111 1111111
Q ss_pred hccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCch-hhhhhc-CCccee
Q 043647 257 SITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCST-DVALTV-GTAEYY 334 (1096)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~ 334 (1096)
.+..... ..-.++.-++|+|+++.-.....+.+...+......+++|+++... .+...+ .....+
T Consensus 87 ~~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 87 MFAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred HHHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcc
Confidence 1100000 0002456799999998766555555655554444556777766443 221111 122578
Q ss_pred eCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhH
Q 043647 335 NLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAA 382 (1096)
Q Consensus 335 ~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 382 (1096)
++++++.++....+...+-..+ .. -..+....|++.++|..-.+
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~eg-i~---i~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEK-VP---YVPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHH
Confidence 9999999999988887763322 11 12456778999999876443
No 73
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=2.3e-05 Score=90.58 Aligned_cols=183 Identities=16% Similarity=0.150 Sum_probs=110.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-c-------------------cCcEE
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-M-------------------FNLRS 237 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~-------------------f~~~~ 237 (1096)
.+++|.+..+..+...+.... -...+.++|+.|+||||+|+.+++..... . |.-.+
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 468899999999998885432 24567899999999999999988743211 0 11111
Q ss_pred EEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHH-hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEE
Q 043647 238 WVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREA-VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKIL 316 (1096)
Q Consensus 238 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 316 (1096)
++...... ..++..++...+... ..+++-++|+|++..-+...++.+...+......+.+|
T Consensus 92 eidaas~~------------------gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fI 153 (546)
T PRK14957 92 EIDAASRT------------------GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFI 153 (546)
T ss_pred Eeeccccc------------------CHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEE
Confidence 11111111 111222333323221 24677799999998776677888877776655556655
Q ss_pred E-EcCchhhhhh-cCCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCch-hHHHHH
Q 043647 317 V-TTCSTDVALT-VGTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPL-AAETLG 386 (1096)
Q Consensus 317 v-TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~ 386 (1096)
+ ||....+... ......+++.+++.++....+.+.+-..+ . ....+....|++.++|.+- |+..+-
T Consensus 154 L~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-i---~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 154 LATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-I---NSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4 5443333322 12346799999999998877776552211 1 2234556788999999664 444443
No 74
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=7e-06 Score=92.04 Aligned_cols=195 Identities=16% Similarity=0.103 Sum_probs=112.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
.+++|.+..+..|..++.... -...+.++|+.|+||||+|+.+++......... ...+....+-..+.......
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~--~~pCg~C~sC~~i~~g~~~d 91 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIG--NEPCNECTSCLEITKGISSD 91 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccC--ccccCCCcHHHHHHccCCcc
Confidence 468999999999998885432 234689999999999999999987533211100 00111111111111111000
Q ss_pred ---ccCC-CCCCCcHHHHHHHHHHH-hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcC-chhhhhhc-CC
Q 043647 258 ---ITFS-PNSLKDLNQIQVQLREA-VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTC-STDVALTV-GT 330 (1096)
Q Consensus 258 ---l~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~~-~~ 330 (1096)
+... ....++..++...+... ..++.-++|+|+++.-....++.+...+........+|.+|. ...+...+ ..
T Consensus 92 viEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SR 171 (484)
T PRK14956 92 VLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSR 171 (484)
T ss_pred ceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhh
Confidence 0100 01112222333333221 246677999999988777788888777654434555554444 33333222 22
Q ss_pred cceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhH
Q 043647 331 AEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAA 382 (1096)
Q Consensus 331 ~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 382 (1096)
...|.+.+++.++..+.+.+.+-..+ . .-..+....|++.++|.+--+
T Consensus 172 Cq~~~f~~ls~~~i~~~L~~i~~~Eg-i---~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 172 CQDFIFKKVPLSVLQDYSEKLCKIEN-V---QYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred hheeeecCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCChHHHH
Confidence 35699999999998888877663221 1 223456788999999998443
No 75
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=4.1e-07 Score=96.68 Aligned_cols=91 Identities=16% Similarity=0.145 Sum_probs=47.9
Q ss_pred CCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCc-ccchhhcCCCCCcCeEEEecCCCcCcCC
Q 043647 855 FSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKL-ESIAERFHNNTSLGCIWIWKCENLKSLP 933 (1096)
Q Consensus 855 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~lp 933 (1096)
...+|+|+.|+|+.|......+ ...-..++.|+.|.|+.|..- +.+......+|+|+.|++..+..+..-.
T Consensus 168 ~eqLp~Le~LNls~Nrl~~~~~--------s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~ 239 (505)
T KOG3207|consen 168 AEQLPSLENLNLSSNRLSNFIS--------SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKA 239 (505)
T ss_pred HHhcccchhcccccccccCCcc--------ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceec
Confidence 4456777777777665332110 111124566777777776522 2233444566777777777654332222
Q ss_pred CCCCCCCCcCeEEEeCCCCC
Q 043647 934 EGLPNLNSLHNIYVWDCPSL 953 (1096)
Q Consensus 934 ~~l~~l~~L~~L~l~~c~~l 953 (1096)
.....+..|++|+|++++.+
T Consensus 240 ~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 240 TSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred chhhhhhHHhhccccCCccc
Confidence 22344566777777764433
No 76
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.20 E-value=3.5e-05 Score=85.81 Aligned_cols=179 Identities=15% Similarity=0.166 Sum_probs=105.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEe--cCccChHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCV--SDDFDILRITKSIL 255 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~ 255 (1096)
.+++|+++.++.+..++... ..+.+.|+|..|+||||+|+.+.+......+.. .++.+ +...... ...+.+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~-----~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~-~~i~~~~~~~~~~~-~~~~~i 89 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK-----NMPHLLFAGPPGTGKTTAALALARELYGEDWRE-NFLELNASDERGID-VIRNKI 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC-----CCCeEEEECCCCCCHHHHHHHHHHHHcCCcccc-ceEEeccccccchH-HHHHHH
Confidence 45889999999999988432 234579999999999999999987643222211 12222 1111111 111111
Q ss_pred HhccCCCCCCCcHHHHHHHHHHH-h-CCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCch-hhhhhc-CCc
Q 043647 256 ESITFSPNSLKDLNQIQVQLREA-V-AGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCST-DVALTV-GTA 331 (1096)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~l~~~-l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~ 331 (1096)
.++. ... . ...+-++++|+++.-....++.+...+......+++|+++... .+.... ...
T Consensus 90 ~~~~----------------~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 90 KEFA----------------RTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHH----------------hcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 1110 000 0 1335689999997655445556665555444556777766432 111111 123
Q ss_pred ceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHH
Q 043647 332 EYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAE 383 (1096)
Q Consensus 332 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 383 (1096)
..+++.+++.++....+...+-..+ . .-..+....+++.++|.+--+.
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~-~---~i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEG-I---EITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHH
Confidence 4688999999999888887774322 1 1224567788999999876543
No 77
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=3.4e-05 Score=88.89 Aligned_cols=199 Identities=18% Similarity=0.200 Sum_probs=114.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
.++||.+..++.|.+++.... -.+.+.++|..|+||||+|+.+.+......-+...-+. +.....-...+.|...
T Consensus 16 ddVIGQe~vv~~L~~al~~gR----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-AQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-CCCCcccHHHHHHHcC
Confidence 468999999999999985442 34567899999999999998888743221000000000 0011111111111110
Q ss_pred -----ccCCCCCCCcHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcC-chhhhhh
Q 043647 258 -----ITFSPNSLKDLNQIQVQLREA----VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTC-STDVALT 327 (1096)
Q Consensus 258 -----l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~ 327 (1096)
+.....+....+++...+... ..++.-++|||+++.-+...++.+...+..-....++|++|. ...+...
T Consensus 91 ~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpT 170 (700)
T PRK12323 91 RFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 170 (700)
T ss_pred CCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhH
Confidence 000001112233333333322 246677999999988777778888777765444556555544 4444322
Q ss_pred c-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHH
Q 043647 328 V-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETL 385 (1096)
Q Consensus 328 ~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 385 (1096)
+ .....+.++.++.++..+.+.+.+...+ . ....+..+.|++.++|.|.....+
T Consensus 171 IrSRCq~f~f~~ls~eei~~~L~~Il~~Eg-i---~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 171 VLSRCLQFNLKQMPPGHIVSHLDAILGEEG-I---AHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 1225789999999999998887663221 1 122345678999999998654433
No 78
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=5.4e-05 Score=87.06 Aligned_cols=191 Identities=17% Similarity=0.203 Sum_probs=113.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCc-EEEEEecCccChHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNL-RSWVCVSDDFDILRITKSIL 255 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~-~~wv~~~~~~~~~~~~~~i~ 255 (1096)
.+++|.+..+..+...+.... -.+.+.++|+.|+||||+|+.+++..... .... --+..+.. -.....+.
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~----C~~C~~i~ 92 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ----CTNCISFN 92 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC----ChHHHHHh
Confidence 368899999998888774432 24678899999999999999998753221 0000 00000000 01111111
Q ss_pred Hh-------ccCCCCCCCcHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEE-EcCchh
Q 043647 256 ES-------ITFSPNSLKDLNQIQVQLREA----VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILV-TTCSTD 323 (1096)
Q Consensus 256 ~~-------l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~ 323 (1096)
.. +.. .+....+++...+... ..+++-++|+|+++.-....|+.+...+......+.+|+ ||+...
T Consensus 93 ~~~h~Dv~eida--as~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~k 170 (507)
T PRK06645 93 NHNHPDIIEIDA--ASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQK 170 (507)
T ss_pred cCCCCcEEEeec--cCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHH
Confidence 10 111 0112233333333221 346778999999988776778888877765555666554 444444
Q ss_pred hhhhc-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhH
Q 043647 324 VALTV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAA 382 (1096)
Q Consensus 324 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 382 (1096)
+...+ .....+++.+++.++....+.+.+-..+ . .-..+....|++.++|.+--+
T Consensus 171 I~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~eg-i---~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 171 IPATIISRCQRYDLRRLSFEEIFKLLEYITKQEN-L---KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred hhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHH
Confidence 44332 2335789999999999999988874322 1 122355677999999977444
No 79
>PRK04195 replication factor C large subunit; Provisional
Probab=98.16 E-value=8.7e-05 Score=86.73 Aligned_cols=186 Identities=17% Similarity=0.148 Sum_probs=109.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
.+++|.++.++++.+|+.....+ ...+.+.|+|++|+||||+|++++++.. |+ .+-+++++..+. .....++..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g-~~~~~lLL~GppG~GKTtla~ala~el~---~~-~ielnasd~r~~-~~i~~~i~~ 87 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKG-KPKKALLLYGPPGVGKTSLAHALANDYG---WE-VIELNASDQRTA-DVIERVAGE 87 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcC-CCCCeEEEECCCCCCHHHHHHHHHHHcC---CC-EEEEcccccccH-HHHHHHHHH
Confidence 46899999999999998543211 2267899999999999999999988642 22 222333332222 222222222
Q ss_pred ccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCCh----hhHHHhhcccCCCCCCcEEEEEcCchh-hhh-hc-CC
Q 043647 258 ITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNY----SLWNTLKSPFRAGASGSKILVTTCSTD-VAL-TV-GT 330 (1096)
Q Consensus 258 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~-~~-~~ 330 (1096)
..... .....++-+||+|+++.-.. ..+..+...+.. .+..||+|+.+.. ... .+ ..
T Consensus 88 ~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr 151 (482)
T PRK04195 88 AATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNA 151 (482)
T ss_pred hhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhcc
Confidence 11100 00113678999999976422 234555544442 2345666664321 111 11 22
Q ss_pred cceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHHHHh
Q 043647 331 AEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGGLL 389 (1096)
Q Consensus 331 ~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 389 (1096)
...+.+.+++.++....+.+.+...+ ... ..++...|++.++|..-.+......+
T Consensus 152 ~~~I~f~~~~~~~i~~~L~~i~~~eg-i~i---~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 152 CLMIEFKRLSTRSIVPVLKRICRKEG-IEC---DDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 35788999999998888877664322 111 24567889999999776655443333
No 80
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.14 E-value=8.8e-05 Score=83.95 Aligned_cols=182 Identities=15% Similarity=0.194 Sum_probs=109.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc---------------------ccCcE
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE---------------------MFNLR 236 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~f~~~ 236 (1096)
.+++|.++.++.+.+++.... -.+.+.++|++|+||||+|+.+.+..... +++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~- 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV- 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-
Confidence 367999999999999885432 24578899999999999998887643211 1111
Q ss_pred EEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHH-hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEE
Q 043647 237 SWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREA-VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKI 315 (1096)
Q Consensus 237 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 315 (1096)
.++........ .+..++...+... ..+++-++|+|+++.-.....+.+...+......+.+
T Consensus 89 ~~~~~~~~~~~------------------~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 89 IEIDAASNNGV------------------DDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred EEeeccccCCH------------------HHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 11211100000 1111222222111 2345668899999665555666776666544455666
Q ss_pred EEEcCchh-hhhhc-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHH
Q 043647 316 LVTTCSTD-VALTV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLG 386 (1096)
Q Consensus 316 ivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 386 (1096)
|++|.+.. +...+ .....+++.+++.++..+.+...+-..+ . .-..+.+..+++.++|.|..+....
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g-~---~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEG-I---KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 66765443 22221 2235788899999998888887663222 1 1124677889999999987665443
No 81
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=6.7e-05 Score=83.84 Aligned_cols=192 Identities=15% Similarity=0.109 Sum_probs=108.7
Q ss_pred CccccchHHHHHHHHHHhcCCC-----CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEP-----TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITK 252 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 252 (1096)
.+++|.+..++.+.+++..+.. +..-.+.+.++|+.|+|||++|+.+.+......-+ +..+ ..-...+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~---~~~C----g~C~~C~ 77 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD---EPGC----GECRACR 77 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC---CCCC----CCCHHHH
Confidence 3588999999999998865421 01135668899999999999998886532111000 0000 0001111
Q ss_pred HHHHhccC------CCCCCCcHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCch
Q 043647 253 SILESITF------SPNSLKDLNQIQVQLREA----VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCST 322 (1096)
Q Consensus 253 ~i~~~l~~------~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 322 (1096)
.+...-.. ........+++...+... ..+++-++|+|+++.-+......+...+.....+..+|++|.+.
T Consensus 78 ~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~ 157 (394)
T PRK07940 78 TVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSP 157 (394)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECCh
Confidence 11100000 000111223322222111 13566688899998776666666766665545566666666654
Q ss_pred -hhhhhc-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHH
Q 043647 323 -DVALTV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETL 385 (1096)
Q Consensus 323 -~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 385 (1096)
.+...+ .....+.+.+++.++..+.+.... + . ..+.+..++..++|.|.....+
T Consensus 158 ~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~---~-----~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 158 EDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G---V-----DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred HHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C---C-----CHHHHHHHHHHcCCCHHHHHHH
Confidence 333221 223679999999999988886432 1 1 1345678899999999755443
No 82
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=4e-05 Score=87.84 Aligned_cols=195 Identities=20% Similarity=0.241 Sum_probs=107.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHH-
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILE- 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~- 256 (1096)
.+++|.+..+..+...+.... -.+.+.++|++|+||||+|+.+++...... |.. ..+...-.....+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~-----~~~-~~pc~~c~~c~~i~~g 83 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS----ISHAYIFAGPRGTGKTTVARILAKSLNCEN-----RKG-VEPCNECRACRSIDEG 83 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHhcccc-----CCC-CCCCcccHHHHHHhcC
Confidence 468999888888877774432 235688999999999999999877532110 000 000000011111100
Q ss_pred ------hccCCCCCCCcHHHHHHHHHHH-----hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCc-hhh
Q 043647 257 ------SITFSPNSLKDLNQIQVQLREA-----VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCS-TDV 324 (1096)
Q Consensus 257 ------~l~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v 324 (1096)
.+.. ......+++. .+.+. ..+++-++|+|+++.-.....+.+...+........+|++|.+ ..+
T Consensus 84 ~~~dv~el~a--a~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl 160 (472)
T PRK14962 84 TFMDVIELDA--ASNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKV 160 (472)
T ss_pred CCCccEEEeC--cccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhh
Confidence 0100 0011122222 12221 2356779999999665445566666666543334444444433 333
Q ss_pred hhhc-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCC-CchhHHHHHHHh
Q 043647 325 ALTV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRG-LPLAAETLGGLL 389 (1096)
Q Consensus 325 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~~~~l 389 (1096)
...+ .....+.+.+++.++....+.+.+...+ . .-..++...|++.++| ++.|+..+-.+.
T Consensus 161 ~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~eg-i---~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 161 PPTIISRCQVIEFRNISDELIIKRLQEVAEAEG-I---EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred hHHHhcCcEEEEECCccHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3222 2336789999999998888887763222 1 1224566778887765 466766665543
No 83
>PRK09087 hypothetical protein; Validated
Probab=98.10 E-value=3.2e-05 Score=79.96 Aligned_cols=141 Identities=17% Similarity=0.169 Sum_probs=87.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKR 283 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 283 (1096)
-+.+.|||+.|+|||+|++.+++.... .+++.. .+..++... +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~------~~i~~~------~~~~~~~~~---------------------~~~-- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDA------LLIHPN------EIGSDAANA---------------------AAE-- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCC------EEecHH------HcchHHHHh---------------------hhc--
Confidence 356899999999999999988864321 133221 111111111 111
Q ss_pred EEEEEecCCCC--ChhhHHHhhcccCCCCCCcEEEEEcCc---------hhhhhhcCCcceeeCCCCChHhHHHHHHHhh
Q 043647 284 FLIVLDDVWSK--NYSLWNTLKSPFRAGASGSKILVTTCS---------TDVALTVGTAEYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 284 ~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 352 (1096)
-+|++||+... +.+.+-.+...+. ..|..||+|++. ++....+.....+++++++.++-.+++.+++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 27888999543 2222333332222 236779998873 3344455666789999999999999999888
Q ss_pred cCCCCCCCCcchhHHHHHHHHHhCCCchhHHHH
Q 043647 353 FEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETL 385 (1096)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 385 (1096)
-.. .. .--+++..-|++.+.|..-++..+
T Consensus 167 ~~~-~~---~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 167 ADR-QL---YVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHc-CC---CCCHHHHHHHHHHhhhhHHHHHHH
Confidence 332 11 223567778888888877666643
No 84
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.10 E-value=2.2e-05 Score=94.32 Aligned_cols=171 Identities=22% Similarity=0.261 Sum_probs=96.4
Q ss_pred CccccchHHHH---HHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHH
Q 043647 178 PAVFGRDEDKA---KILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSI 254 (1096)
Q Consensus 178 ~~~vgr~~~~~---~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 254 (1096)
.+++|.+..+. .+.+.+.. .....+.++|++|+||||+|+.+++.... .|. .++... ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~-----~~~~slLL~GPpGtGKTTLA~aIA~~~~~-~f~---~lna~~-~~i------- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA-----DRVGSLILYGPPGVGKTTLARIIANHTRA-HFS---SLNAVL-AGV------- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc-----CCCceEEEECCCCCCHHHHHHHHHHHhcC-cce---eehhhh-hhh-------
Confidence 45889888774 34455532 23556789999999999999999975322 221 111100 000
Q ss_pred HHhccCCCCCCCcHHHHHHHHHHHh--CCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEE--cCchh--hhhhc
Q 043647 255 LESITFSPNSLKDLNQIQVQLREAV--AGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVT--TCSTD--VALTV 328 (1096)
Q Consensus 255 ~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT--tR~~~--v~~~~ 328 (1096)
.+..+......+.+ .+++.++||||++.-+...++.+...+. .|+.++|+ |.++. +...+
T Consensus 91 -----------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL 156 (725)
T PRK13341 91 -----------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKAL 156 (725)
T ss_pred -----------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHh
Confidence 11112222222222 2567899999997765556666654332 35555654 33331 11111
Q ss_pred -CCcceeeCCCCChHhHHHHHHHhhcCCC---CCCCCcchhHHHHHHHHHhCCCc
Q 043647 329 -GTAEYYNLKLLSDDDCWSVFVKHAFEKR---DVGLHRHMGSIRKKVVQKCRGLP 379 (1096)
Q Consensus 329 -~~~~~~~l~~L~~~~~~~lf~~~a~~~~---~~~~~~~~~~~~~~i~~~~~g~P 379 (1096)
.....+.+++++.++...++.+.+-... ......-..+....|++.+.|..
T Consensus 157 ~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 157 VSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred hccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 2235799999999999999887663100 00011122455677888888764
No 85
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.10 E-value=0.0001 Score=74.55 Aligned_cols=91 Identities=14% Similarity=0.198 Sum_probs=63.6
Q ss_pred CCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCch-hhhhhc-CCcceeeCCCCChHhHHHHHHHhhcCCCCC
Q 043647 281 GKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCST-DVALTV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDV 358 (1096)
Q Consensus 281 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 358 (1096)
+.+-++|+||++.-....++.+...+......+.+|++|++. .+...+ .....+.+.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 566789999997766666777877776655566777777654 222211 22357999999999988888765 1 1
Q ss_pred CCCcchhHHHHHHHHHhCCCchh
Q 043647 359 GLHRHMGSIRKKVVQKCRGLPLA 381 (1096)
Q Consensus 359 ~~~~~~~~~~~~i~~~~~g~PLa 381 (1096)
..+.+..|++.++|.|..
T Consensus 170 -----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 -----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred -----CHHHHHHHHHHcCCCccc
Confidence 135678999999998853
No 86
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=4e-05 Score=88.62 Aligned_cols=196 Identities=16% Similarity=0.205 Sum_probs=111.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
.+++|++..++.+.+++.... -.+.+.++|+.|+||||+|+.+++.... .-|... ...+.-...+.+...
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C-----~~~~~~-~~Cg~C~sCr~i~~~ 85 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK----LTHAYIFSGPRGIGKTSIAKIFAKAINC-----LNPKDG-DCCNSCSVCESINTN 85 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC----CCceEEEECCCCCCHHHHHHHHHHHhcC-----CCCCCC-CCCcccHHHHHHHcC
Confidence 468999999999999885432 2457889999999999999988875321 112211 111111222222211
Q ss_pred ccC-----CCCCCCcHHHHHHH---HHHH-hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCc-hhhhhh
Q 043647 258 ITF-----SPNSLKDLNQIQVQ---LREA-VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCS-TDVALT 327 (1096)
Q Consensus 258 l~~-----~~~~~~~~~~~~~~---l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~ 327 (1096)
... ........+++... +... ..+++-++|+|+++.-+...+..+...+......+.+|++|.. ..+...
T Consensus 86 ~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 86 QSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHH
Confidence 100 00011122332222 2211 1234457999999776666777777766554445565555533 333222
Q ss_pred -cCCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCch-hHHHHHH
Q 043647 328 -VGTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPL-AAETLGG 387 (1096)
Q Consensus 328 -~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~ 387 (1096)
......+++.+++.++....+...+-..+ . .-..+.+..+++.++|.+- |+..+-.
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~keg-i---~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEK-I---KIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22345789999999999888887663221 1 1124566788999999664 4444433
No 87
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=4.9e-05 Score=89.34 Aligned_cols=194 Identities=16% Similarity=0.184 Sum_probs=113.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
.++||.+..+..|.+.+.... -...+.++|+.|+||||+|+.+.+..... .++ ...+...-...+.|...
T Consensus 16 ~divGQe~vv~~L~~~l~~~r----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~-----~~~-~~~pCg~C~~C~~i~~g 85 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR----LHHAYLFSGTRGVGKTTIARLLAKGLNCE-----TGI-TATPCGECDNCREIEQG 85 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHhhhhc-----cCC-CCCCCCCCHHHHHHHcC
Confidence 468999999999988885432 23557899999999999999988753221 000 00111111222222211
Q ss_pred -------ccCCC-CCCCcHHHHHHHHHHH-hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchh-hhhh
Q 043647 258 -------ITFSP-NSLKDLNQIQVQLREA-VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTD-VALT 327 (1096)
Q Consensus 258 -------l~~~~-~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~ 327 (1096)
+.... ...++..++...+... ..+++-++|+|+++.-.....+.+...+-.-....++|++|.+.. +...
T Consensus 86 ~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 86 RFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred CCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchH
Confidence 11000 1111222222222211 356778999999988776778888777665444566655555443 3211
Q ss_pred -cCCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHH
Q 043647 328 -VGTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETL 385 (1096)
Q Consensus 328 -~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 385 (1096)
......|.+++++.++..+.+.+.+-..+ . ....+....|++.++|.+-.+..+
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~~il~~e~-i---~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHILQAEQ-I---PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 12236799999999999988877652211 1 223355678999999988644433
No 88
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=0.0001 Score=81.67 Aligned_cols=196 Identities=16% Similarity=0.096 Sum_probs=113.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccc-cCcEEE---EEecCccChHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEM-FNLRSW---VCVSDDFDILRITKS 253 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-f~~~~w---v~~~~~~~~~~~~~~ 253 (1096)
.+++|.+...+.+.+.+.... -...+.++|+.|+||+|+|..+.+..-... ...... ...-.........+.
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~ 94 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARR 94 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHH
Confidence 468999999999999885532 345788999999999999977776432211 000000 000000000011122
Q ss_pred HHHhccC-------C--CC-----CCCcHHHHHHHHHHHh-----CCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcE
Q 043647 254 ILESITF-------S--PN-----SLKDLNQIQVQLREAV-----AGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSK 314 (1096)
Q Consensus 254 i~~~l~~-------~--~~-----~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 314 (1096)
+...-.. . +. ..-.++++. .+.+.+ .+.+.++|+|+++..+......+...+..-..++.
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 2111000 0 00 011234432 333333 35677999999988877778888777765555667
Q ss_pred EEEEcCchhhh-hhc-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHH
Q 043647 315 ILVTTCSTDVA-LTV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLG 386 (1096)
Q Consensus 315 iivTtR~~~v~-~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 386 (1096)
+|++|.+.+.. ..+ .....+.+.+++.++..+++...... . ..+....++..++|.|..+..+.
T Consensus 174 ~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-------~-~~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-------L-PDDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-------C-CHHHHHHHHHHcCCCHHHHHHHh
Confidence 77777665432 111 22357999999999999998765411 0 11222678999999998665443
No 89
>PLN03150 hypothetical protein; Provisional
Probab=98.08 E-value=3.6e-06 Score=101.25 Aligned_cols=92 Identities=29% Similarity=0.363 Sum_probs=81.5
Q ss_pred cceEEEecccccc-cCCCCcCCCCccceeeccccccc-ccccccccCCCCcEEeccCcccCcccCccccCCCCCceEEec
Q 043647 557 KLRVLSLKKYYIT-ELPHSIGDLKHLRYINLSETMIR-CLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLVVT 634 (1096)
Q Consensus 557 ~Lr~L~L~~~~~~-~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~ 634 (1096)
.++.|+|+++.+. .+|..++++.+|++|+|++|.+. .+|..++.+.+|++|+|++|.....+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999987 67899999999999999999998 789999999999999999986666899999999999999999
Q ss_pred cccccccCcccCCC
Q 043647 635 YVDLIREMPLGIKE 648 (1096)
Q Consensus 635 ~~~~~~~~p~~i~~ 648 (1096)
+|.....+|..++.
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 99866678877654
No 90
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.08 E-value=5.2e-06 Score=65.99 Aligned_cols=59 Identities=20% Similarity=0.344 Sum_probs=45.3
Q ss_pred CCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccC
Q 043647 997 TSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDC 1059 (1096)
Q Consensus 997 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c 1059 (1096)
|+|++|++++| .+..+|.+. |..+++|+.|++++ +.++.++...|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~--f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDS--FSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTT--TTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHH--HcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 46788888888 788887653 56778888888886 6678887777888888888888875
No 91
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.08 E-value=2.4e-06 Score=98.19 Aligned_cols=180 Identities=21% Similarity=0.250 Sum_probs=131.7
Q ss_pred CCCCCCcceEEeccCCCccccCCCCcccccCCCCCCC-CCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCC
Q 043647 855 FSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYF-RALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLP 933 (1096)
Q Consensus 855 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp 933 (1096)
+..++.++.|.+.++....+.. ....+ ++|+.|+++++. +..++..+..++.|+.|++++| .+..+|
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~----------~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N-~l~~l~ 179 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPP----------LIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN-DLSDLP 179 (394)
T ss_pred hhcccceeEEecCCcccccCcc----------ccccchhhcccccccccc-hhhhhhhhhccccccccccCCc-hhhhhh
Confidence 3445678888888876544221 12223 379999999976 6777667888999999999994 678888
Q ss_pred CCCCCCCCcCeEEEeCCCCCcccCCC-CCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccc
Q 043647 934 EGLPNLNSLHNIYVWDCPSLVSFPEG-GLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVS 1012 (1096)
Q Consensus 934 ~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~ 1012 (1096)
.....+++|+.|++++ +.+..+|.. ..+..|++|.+++.+.+..+. .+.++..+..|.+.++ .+..
T Consensus 180 ~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~-----------~~~~~~~l~~l~l~~n-~~~~ 246 (394)
T COG4886 180 KLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLS-----------SLSNLKNLSGLELSNN-KLED 246 (394)
T ss_pred hhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCcceecch-----------hhhhcccccccccCCc-eeee
Confidence 7666889999999998 778888865 466778888888865444433 5777888888887777 5555
Q ss_pred cccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCC
Q 043647 1013 FPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFP 1066 (1096)
Q Consensus 1013 l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~ 1066 (1096)
++... ..+++|+.|++++ +.+.+++. +..+.+|+.|++++ +.+...+
T Consensus 247 ~~~~~---~~l~~l~~L~~s~-n~i~~i~~--~~~~~~l~~L~~s~-n~~~~~~ 293 (394)
T COG4886 247 LPESI---GNLSNLETLDLSN-NQISSISS--LGSLTNLRELDLSG-NSLSNAL 293 (394)
T ss_pred ccchh---ccccccceecccc-cccccccc--ccccCccCEEeccC-ccccccc
Confidence 44432 6778899999998 67888872 78888999999988 4444433
No 92
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=6.9e-05 Score=87.91 Aligned_cols=195 Identities=15% Similarity=0.199 Sum_probs=112.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-c--cCcEEEEEecCccChHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-M--FNLRSWVCVSDDFDILRITKSI 254 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--f~~~~wv~~~~~~~~~~~~~~i 254 (1096)
.++||.+..+..|.+++.... -...+.++|+.|+||||+|+.+.+..... . .+...+ .+++.-...+.|
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i 87 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDI 87 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHH
Confidence 468999888888988885432 34677899999999999998886543211 0 000000 111111222222
Q ss_pred HHhc-----cCCCCCCCcHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCc-hhh
Q 043647 255 LESI-----TFSPNSLKDLNQIQVQLREA----VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCS-TDV 324 (1096)
Q Consensus 255 ~~~l-----~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v 324 (1096)
...- .....+....+++...+... ..++.-++|||+|+.-+...++.+...+..-....++|++|.+ ..+
T Consensus 88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 1100 00000112233333333221 1355668999999887777788887777655455666655543 333
Q ss_pred hhh-cCCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHH
Q 043647 325 ALT-VGTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAET 384 (1096)
Q Consensus 325 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 384 (1096)
... ......+++++++.++..+.+.+.+-..+ . .-..+....|++.++|.+--+..
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~eg-i---~ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAEN-V---PAEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 222 22346799999999999888887663222 1 12235667889999997754443
No 93
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=4.8e-05 Score=88.80 Aligned_cols=191 Identities=16% Similarity=0.177 Sum_probs=109.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.+++|.+..+..|.+++.... -.+.+.++|+.|+||||+|+.+.+..... .. -+..+. .-...+.+..
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~---~~~pCg----~C~sCr~i~~ 84 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQ---HGEPCG----VCQSCTQIDA 84 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCC---CCCCCc----ccHHHHHHhc
Confidence 468999999999999985432 24678999999999999998887743211 00 000000 0011111110
Q ss_pred h-----ccCCCCCCCcHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchh-hhh
Q 043647 257 S-----ITFSPNSLKDLNQIQVQLREA----VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTD-VAL 326 (1096)
Q Consensus 257 ~-----l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~ 326 (1096)
. +..........+.+...+... ..+++-++|+|++..........+...+......+++|++|.+.. +..
T Consensus 85 g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~ 164 (709)
T PRK08691 85 GRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPV 164 (709)
T ss_pred cCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccch
Confidence 0 000001111223333222211 236677999999977655556666666654434566776665432 221
Q ss_pred hc-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHH
Q 043647 327 TV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAE 383 (1096)
Q Consensus 327 ~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 383 (1096)
.+ +....+.+.+++.++....+.+.+-..+ . .-..+....|++.++|.+.-+.
T Consensus 165 TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg-i---~id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 165 TVLSRCLQFVLRNMTAQQVADHLAHVLDSEK-I---AYEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC-C---CcCHHHHHHHHHHhCCCHHHHH
Confidence 11 2224578889999999888887663222 1 1234567889999999885443
No 94
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.07 E-value=2.8e-05 Score=80.77 Aligned_cols=157 Identities=17% Similarity=0.184 Sum_probs=96.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCC
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGK 282 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 282 (1096)
.+.-+.+||++|+||||||+.+........ ..||..+....-..-.+.|.++-. =...+.++
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S---yrfvelSAt~a~t~dvR~ife~aq---------------~~~~l~kr 222 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS---YRFVELSATNAKTNDVRDIFEQAQ---------------NEKSLTKR 222 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc---eEEEEEeccccchHHHHHHHHHHH---------------HHHhhhcc
Confidence 477889999999999999999998654432 456776665444344444443321 11224678
Q ss_pred cEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEE--EcCchhhhh---hcCCcceeeCCCCChHhHHHHHHHhhc--CC
Q 043647 283 RFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILV--TTCSTDVAL---TVGTAEYYNLKLLSDDDCWSVFVKHAF--EK 355 (1096)
Q Consensus 283 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~v~~---~~~~~~~~~l~~L~~~~~~~lf~~~a~--~~ 355 (1096)
|.+|++|.|..-+..+.+.+ +|....|+-++| ||.++..-. .+....++.++.|..++...++.+..- ++
T Consensus 223 kTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~d 299 (554)
T KOG2028|consen 223 KTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGD 299 (554)
T ss_pred eeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhcc
Confidence 99999999976544444444 455567777776 566654321 123346899999999999888877432 11
Q ss_pred -CC---CCCCc---chhHHHHHHHHHhCCCch
Q 043647 356 -RD---VGLHR---HMGSIRKKVVQKCRGLPL 380 (1096)
Q Consensus 356 -~~---~~~~~---~~~~~~~~i~~~~~g~PL 380 (1096)
.. .-..+ -...+..-++..|+|-.-
T Consensus 300 ser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 300 SERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 11 11111 123455566677777653
No 95
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.07 E-value=0.0001 Score=77.13 Aligned_cols=193 Identities=13% Similarity=0.110 Sum_probs=118.0
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-cc----CcEEEEEecCccChHHHHHHHHHhccC
Q 043647 186 DKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MF----NLRSWVCVSDDFDILRITKSILESITF 260 (1096)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f----~~~~wv~~~~~~~~~~~~~~i~~~l~~ 260 (1096)
.++++.+.+..+ .....+-+.|||..|.|||++++.+.+.+... .- -.++.|.+...++...++..|+.+++.
T Consensus 45 ~L~~L~~Ll~~P--~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 45 ALDRLEELLEYP--KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHhCC--cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 344455555332 34567789999999999999999988754332 11 147778888889999999999999998
Q ss_pred CCCCCCcHHHHHHHHHHHhCC-CcEEEEEecCCCC---ChhhHHHhhcccC---CCCCCcEEEEEcCchhhhhhcC----
Q 043647 261 SPNSLKDLNQIQVQLREAVAG-KRFLIVLDDVWSK---NYSLWNTLKSPFR---AGASGSKILVTTCSTDVALTVG---- 329 (1096)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~---~~~~~~~l~~~l~---~~~~gs~iivTtR~~~v~~~~~---- 329 (1096)
..............+...++. +--+||+|++.+. ....-..+...+. +.-.=+-|.|.|++.--+-..+
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa 202 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLA 202 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHH
Confidence 866666666666555555543 3447899999652 1122223333332 2223455666666433322211
Q ss_pred -CcceeeCCCCChHhH-HHHHHHhh--cCCCCCCCCcchhHHHHHHHHHhCCCchh
Q 043647 330 -TAEYYNLKLLSDDDC-WSVFVKHA--FEKRDVGLHRHMGSIRKKVVQKCRGLPLA 381 (1096)
Q Consensus 330 -~~~~~~l~~L~~~~~-~~lf~~~a--~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 381 (1096)
...++.++....++- ..|+.... ..-... ..-...++++.|...++|+.=-
T Consensus 203 ~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~-S~l~~~~la~~i~~~s~G~iG~ 257 (302)
T PF05621_consen 203 SRFEPFELPRWELDEEFRRLLASFERALPLRKP-SNLASPELARRIHERSEGLIGE 257 (302)
T ss_pred hccCCccCCCCCCCcHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHHHcCCchHH
Confidence 124567777765544 44543332 111222 2234578999999999998633
No 96
>PRK08727 hypothetical protein; Validated
Probab=98.06 E-value=7.3e-05 Score=78.09 Aligned_cols=148 Identities=18% Similarity=0.109 Sum_probs=88.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcE
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKRF 284 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 284 (1096)
..+.|+|..|+|||+||+++++....+. ..+.|+++.+ ....+. ..+. .+ .+.-
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~-~~~~y~~~~~------~~~~~~-----------------~~~~-~l-~~~d 95 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAG-RSSAYLPLQA------AAGRLR-----------------DALE-AL-EGRS 95 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC-CcEEEEeHHH------hhhhHH-----------------HHHH-HH-hcCC
Confidence 4599999999999999999987643322 2455665322 111110 1111 11 2335
Q ss_pred EEEEecCCCCCh-hhHHHhhcccCC--CCCCcEEEEEcCch---------hhhhhcCCcceeeCCCCChHhHHHHHHHhh
Q 043647 285 LIVLDDVWSKNY-SLWNTLKSPFRA--GASGSKILVTTCST---------DVALTVGTAEYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 285 LlVlDdv~~~~~-~~~~~l~~~l~~--~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 352 (1096)
+||+||+..... ..|......+.+ ...|..||+|++.. ++...+.....+++++++.++-.+++.+++
T Consensus 96 lLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a 175 (233)
T PRK08727 96 LVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERA 175 (233)
T ss_pred EEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHH
Confidence 899999964321 234322222211 12466799999843 222333345689999999999999999877
Q ss_pred cCCCCCCCCcchhHHHHHHHHHhCCCchhH
Q 043647 353 FEKRDVGLHRHMGSIRKKVVQKCRGLPLAA 382 (1096)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 382 (1096)
...+ . .-..++...|++.+.|..-++
T Consensus 176 ~~~~-l---~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 176 QRRG-L---ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHcC-C---CCCHHHHHHHHHhCCCCHHHH
Confidence 4322 1 223456677888888766554
No 97
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=8.4e-05 Score=84.70 Aligned_cols=190 Identities=21% Similarity=0.203 Sum_probs=110.4
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.++||.+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.++...... ..+ ..+...-.....|..
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~-------~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK----IPQSILLVGASGVGKTTCARIISLCLNCSNGPT-------SDPCGTCHNCISIKN 81 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCC-------CCCccccHHHHHHhc
Confidence 468999998888888874432 24578899999999999998887632110 000 001111111112211
Q ss_pred hccC-----CCCCCCcHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCc-hhhhh
Q 043647 257 SITF-----SPNSLKDLNQIQVQLREA----VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCS-TDVAL 326 (1096)
Q Consensus 257 ~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~ 326 (1096)
.... ...+....+++...+... ..+++-++|+|++..-.....+.+...+..-...+++|++|.. ..+..
T Consensus 82 ~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~ 161 (491)
T PRK14964 82 SNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPV 161 (491)
T ss_pred cCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHH
Confidence 1100 000111222322222111 2356678999999776666677777777655556666666543 34332
Q ss_pred hc-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhH
Q 043647 327 TV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAA 382 (1096)
Q Consensus 327 ~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 382 (1096)
.+ .....+++.+++.++..+.+.+.+...+. .-..+....|++.++|.+-.+
T Consensus 162 tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi----~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 162 TIISRCQRFDLQKIPTDKLVEHLVDIAKKENI----EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred HHHHhheeeecccccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 22 23367899999999999888887743221 223456678999999987543
No 98
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=7.9e-05 Score=86.44 Aligned_cols=191 Identities=16% Similarity=0.137 Sum_probs=108.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.++||-+..+..+.+++.... -...+.++|+.|+||||+|+.+.+..... .++ ..+.+.-...+.|..
T Consensus 16 ~divGq~~v~~~L~~~~~~~~----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i~~ 84 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS-------ANPCNDCENCREIDE 84 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------cccCCCCHHHHHHhc
Confidence 468999999999999995432 24567899999999999998888743221 110 001111111111111
Q ss_pred hcc-----CCCCCCCcHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCch-hhhh
Q 043647 257 SIT-----FSPNSLKDLNQIQVQLREA----VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCST-DVAL 326 (1096)
Q Consensus 257 ~l~-----~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~ 326 (1096)
.-. ....+....+++...+... ..++.-++|+|+|+.-.....+.+...+......+++|++|.+. .+..
T Consensus 85 g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~ 164 (509)
T PRK14958 85 GRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPV 164 (509)
T ss_pred CCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchH
Confidence 000 0000112233322222211 24667789999998776677777777766555567666655443 3321
Q ss_pred hc-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHH
Q 043647 327 TV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAE 383 (1096)
Q Consensus 327 ~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 383 (1096)
.+ .....+++++++.++....+...+-..+ . .-..+....|++.++|.+--+.
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~l~~il~~eg-i---~~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 165 TVLSRCLQFHLAQLPPLQIAAHCQHLLKEEN-V---EFENAALDLLARAANGSVRDAL 218 (509)
T ss_pred HHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCcHHHHH
Confidence 11 2235688999999887776665552211 1 1123456778999999875443
No 99
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.04 E-value=1.9e-05 Score=85.98 Aligned_cols=89 Identities=16% Similarity=0.094 Sum_probs=64.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCc--cChHHHHHHHHHhccCCCCCCCcHH------HHHHHH
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDD--FDILRITKSILESITFSPNSLKDLN------QIQVQL 275 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~l 275 (1096)
-..++|+|++|+|||||++.+++.....+|+..+||.+.+. .++.++++.++..+-....+..... .+....
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 46789999999999999999999766558999999999866 7899999999665544433221111 111111
Q ss_pred HH-HhCCCcEEEEEecCC
Q 043647 276 RE-AVAGKRFLIVLDDVW 292 (1096)
Q Consensus 276 ~~-~l~~kr~LlVlDdv~ 292 (1096)
.. .-+|++++|++|++.
T Consensus 248 e~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 248 KRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHcCCCeEEEEEChh
Confidence 12 236899999999994
No 100
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=0.0002 Score=79.01 Aligned_cols=196 Identities=17% Similarity=0.199 Sum_probs=115.8
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc---ccCcEEEEEecCccChHHHHHH
Q 043647 177 EPAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE---MFNLRSWVCVSDDFDILRITKS 253 (1096)
Q Consensus 177 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~ 253 (1096)
-..++|-++..+.+...+.... -...+.|+|+.|+||||+|+.+.+..... .+... ....+.......+.
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~ 94 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQ 94 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHH
Confidence 3568999999999999885432 34578999999999999998887753221 01111 00111111123333
Q ss_pred HHHh-------ccCC--CC-----CCCcHHHHHHHHHHHh-----CCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcE
Q 043647 254 ILES-------ITFS--PN-----SLKDLNQIQVQLREAV-----AGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSK 314 (1096)
Q Consensus 254 i~~~-------l~~~--~~-----~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 314 (1096)
+... +... .. ..-..+++. .+.+++ .+++-++|+|+++.-+....+.+...+........
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~ 173 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARAL 173 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCce
Confidence 3322 1100 00 111234433 344443 35677999999988777777777776655434455
Q ss_pred EEEEcCch-hhhhhc-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHH
Q 043647 315 ILVTTCST-DVALTV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLG 386 (1096)
Q Consensus 315 iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 386 (1096)
+|++|... .+...+ .....+.+.+++.++..+++...... . . -..+.+..|++.++|.|.....+.
T Consensus 174 fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~----~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 174 FILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-Q----G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-c----C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44444433 332221 22257999999999999999874311 1 1 123456789999999998665443
No 101
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.0001 Score=83.73 Aligned_cols=198 Identities=13% Similarity=0.146 Sum_probs=111.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEE-ecCccChHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVC-VSDDFDILRITKSIL 255 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~-~~~~~~~~~~~~~i~ 255 (1096)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++..... .++...|.. ...+...-...+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~ 91 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFD 91 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHh
Confidence 468899988888888884332 23558899999999999998887654321 111111110 001111111222222
Q ss_pred HhccC-----CCCCCCcHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEc-Cchhhh
Q 043647 256 ESITF-----SPNSLKDLNQIQVQLREA----VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTT-CSTDVA 325 (1096)
Q Consensus 256 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v~ 325 (1096)
..... ........+++....... ..+.+-++|+|++..-....++.+...+......+.+|++| +...+.
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred cCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 11100 000111233433322221 23566688999997766667888877776555566666555 433333
Q ss_pred hhc-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHH
Q 043647 326 LTV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAE 383 (1096)
Q Consensus 326 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 383 (1096)
..+ .....+++.+++.++..+.+...+-..+ ..-..+.+..|++.++|.+--+.
T Consensus 172 ~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g----~~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 172 ATIASRCQRFNFKRIPLEEIQQQLQGICEAEG----ISVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHH
Confidence 221 1225688999999998887776652211 12234677889999999775443
No 102
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.01 E-value=0.00012 Score=76.56 Aligned_cols=153 Identities=15% Similarity=0.149 Sum_probs=90.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKR 283 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 283 (1096)
.+.+.|+|+.|+|||+||+++++..... -..+.++++..... ...+. .+.+.. -
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~-~~~v~y~~~~~~~~--------------------~~~~~----~~~~~~-~ 98 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQR-GRAVGYVPLDKRAW--------------------FVPEV----LEGMEQ-L 98 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEEHHHHhh--------------------hhHHH----HHHhhh-C
Confidence 3578999999999999999988753321 22345555432100 00111 111111 2
Q ss_pred EEEEEecCCCCCh-hhHHHhh-cccCC-CCCC-cEEEEEcCch---------hhhhhcCCcceeeCCCCChHhHHHHHHH
Q 043647 284 FLIVLDDVWSKNY-SLWNTLK-SPFRA-GASG-SKILVTTCST---------DVALTVGTAEYYNLKLLSDDDCWSVFVK 350 (1096)
Q Consensus 284 ~LlVlDdv~~~~~-~~~~~l~-~~l~~-~~~g-s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 350 (1096)
-++++||+..... ..|+... ..+.. ...| .++|+||+.+ +....+....++++++++.++-.+++.+
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHH
Confidence 4789999965321 3344322 22211 1123 4799998754 3344455667899999999999999887
Q ss_pred hhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHH
Q 043647 351 HAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLG 386 (1096)
Q Consensus 351 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 386 (1096)
++...+ . .--+++..-|++.+.|..-++..+-
T Consensus 179 ~a~~~~-~---~l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 179 RARLRG-F---ELPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHcC-C---CCCHHHHHHHHHhhcCCHHHHHHHH
Confidence 663321 1 2335677778888887765554433
No 103
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.99 E-value=6.7e-05 Score=77.28 Aligned_cols=182 Identities=14% Similarity=0.179 Sum_probs=99.8
Q ss_pred cccc-hHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccC-cEEEEEecCccChHHHHHHHHHh
Q 043647 180 VFGR-DEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFN-LRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 180 ~vgr-~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
++|. .+......+.+.... +.....+.|+|..|+|||.|.+++++.....+.+ .+++++ ..++...+...
T Consensus 11 v~g~~N~~a~~~~~~ia~~~--~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~ 82 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENP--GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADA 82 (219)
T ss_dssp --TTTTHHHHHHHHHHHHST--TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcC--CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHH
Confidence 3464 333444455554442 2234568899999999999999999875443222 355554 44566666655
Q ss_pred ccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCCh-hhHHHhh-cccCC-CCCCcEEEEEcCch---------hhh
Q 043647 258 ITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNY-SLWNTLK-SPFRA-GASGSKILVTTCST---------DVA 325 (1096)
Q Consensus 258 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-~~~~~l~-~~l~~-~~~gs~iivTtR~~---------~v~ 325 (1096)
+.. ... ..+++.+++ -=+|++||++.... ..|+... ..+.. ...|-+||+|++.. +..
T Consensus 83 ~~~-----~~~----~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~ 152 (219)
T PF00308_consen 83 LRD-----GEI----EEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLR 152 (219)
T ss_dssp HHT-----TSH----HHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHH
T ss_pred HHc-----ccc----hhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhh
Confidence 543 112 234444543 34778999965432 2233322 11211 13466899999543 223
Q ss_pred hhcCCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHH
Q 043647 326 LTVGTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAE 383 (1096)
Q Consensus 326 ~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 383 (1096)
..+...-.+++++++.++-.+++.+.+-..+ . .--++++.-|++.+.+..-.+.
T Consensus 153 SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~-~---~l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 153 SRLSWGLVVELQPPDDEDRRRILQKKAKERG-I---ELPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHH
T ss_pred hhHhhcchhhcCCCCHHHHHHHHHHHHHHhC-C---CCcHHHHHHHHHhhcCCHHHHH
Confidence 3344556899999999999999998884322 1 1234566667777665544433
No 104
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.96 E-value=0.00013 Score=76.36 Aligned_cols=152 Identities=21% Similarity=0.179 Sum_probs=87.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKR 283 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 283 (1096)
.+.+.|+|..|+|||+||+++++....... ...+++..... ..+ ... ...
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~-~~~~i~~~~~~------~~~----------------------~~~-~~~ 91 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGR-NARYLDAASPL------LAF----------------------DFD-PEA 91 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCC-cEEEEehHHhH------HHH----------------------hhc-ccC
Confidence 457899999999999999999885422221 23444432211 000 011 233
Q ss_pred EEEEEecCCCCChhhHHHhhcccCCC-CCCc-EEEEEcCchhhhh--------hcCCcceeeCCCCChHhHHHHHHHhhc
Q 043647 284 FLIVLDDVWSKNYSLWNTLKSPFRAG-ASGS-KILVTTCSTDVAL--------TVGTAEYYNLKLLSDDDCWSVFVKHAF 353 (1096)
Q Consensus 284 ~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~iivTtR~~~v~~--------~~~~~~~~~l~~L~~~~~~~lf~~~a~ 353 (1096)
-+||+||+...+...-+.+...+... ..|. .||+|++...... .+.....++++++++++-..++.+.+-
T Consensus 92 ~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~ 171 (227)
T PRK08903 92 ELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAA 171 (227)
T ss_pred CEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHH
Confidence 47889999654322223333333221 2333 4677766433222 222235789999999887777665442
Q ss_pred CCCCCCCCcchhHHHHHHHHHhCCCchhHHHHHHHh
Q 043647 354 EKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGGLL 389 (1096)
Q Consensus 354 ~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 389 (1096)
. ... .-.+++...+++...|.+..+..+...+
T Consensus 172 ~-~~v---~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 172 E-RGL---QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred H-cCC---CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 1 111 2234567778888999998877666554
No 105
>PRK05642 DNA replication initiation factor; Validated
Probab=97.95 E-value=0.00014 Score=75.95 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=90.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKR 283 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 283 (1096)
...+.|+|..|+|||.||+++++....+ -..++|++.. ++... . ..+.+.+++-.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~-~~~v~y~~~~------~~~~~--------------~----~~~~~~~~~~d 99 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR-GEPAVYLPLA------ELLDR--------------G----PELLDNLEQYE 99 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEeeHH------HHHhh--------------h----HHHHHhhhhCC
Confidence 3578999999999999999998753222 2345666542 12111 0 12223333323
Q ss_pred EEEEEecCCCCC-hhhHHH-hhcccCC-CCCCcEEEEEcCchhh---------hhhcCCcceeeCCCCChHhHHHHHHHh
Q 043647 284 FLIVLDDVWSKN-YSLWNT-LKSPFRA-GASGSKILVTTCSTDV---------ALTVGTAEYYNLKLLSDDDCWSVFVKH 351 (1096)
Q Consensus 284 ~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtR~~~v---------~~~~~~~~~~~l~~L~~~~~~~lf~~~ 351 (1096)
++|+||+.... ...|+. +...+.. ...|..||+|++...- ...+.....+.+++++.++-.+.+.++
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 67889996431 134443 3332221 2346688888875322 222233467899999999999999876
Q ss_pred hcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHHH
Q 043647 352 AFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGG 387 (1096)
Q Consensus 352 a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 387 (1096)
+...+ . .-..++..-|++.+.|..-++..+-.
T Consensus 179 a~~~~-~---~l~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 179 ASRRG-L---HLTDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHcC-C---CCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 64321 1 12246777888888887655554433
No 106
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00018 Score=84.66 Aligned_cols=196 Identities=16% Similarity=0.166 Sum_probs=114.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccC--cEEEEEecCccChHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFN--LRSWVCVSDDFDILRITKSI 254 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~--~~~wv~~~~~~~~~~~~~~i 254 (1096)
.+++|.+..++.+.+++..+. -...+.++|+.|+||||+|+.+.+..... ... ...+- ....-...+.|
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~i 95 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQAI 95 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHHH
Confidence 468999999999999885432 24578899999999999999888753221 100 00000 01111112222
Q ss_pred HHhccC-----CCCCCCcHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEc-Cchhh
Q 043647 255 LESITF-----SPNSLKDLNQIQVQLREA----VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTT-CSTDV 324 (1096)
Q Consensus 255 ~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v 324 (1096)
...-.. ...+....+++...+... ..+++-++|+|++..-.....+.+...+..-...+.+|++| ....+
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kl 175 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKV 175 (598)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhh
Confidence 221110 001112233333222111 23556689999997776666777777766554566666555 33333
Q ss_pred hhhc-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHH
Q 043647 325 ALTV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETL 385 (1096)
Q Consensus 325 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 385 (1096)
...+ .....+++..++.++....+.+.+-..+ . .-..+....|++.++|.+.-+...
T Consensus 176 l~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg-i---~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 176 PVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG-V---EVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3222 2235789999999999988887763222 1 122356778999999988655433
No 107
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00017 Score=84.47 Aligned_cols=194 Identities=18% Similarity=0.198 Sum_probs=108.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
.+++|.+..++.+..++.... -.+.+.++|+.|+||||+|+.+.+...... ++. ..+...-.....+...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~-----~~~-~~pcg~C~~C~~i~~~ 85 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR----LHHAYLFTGTRGVGKTTLARILAKSLNCET-----GVT-ATPCGVCSACLEIDSG 85 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC----CCEEEEEECCCCCCHHHHHHHHHHHhcCCC-----CCC-CCCCCCCHHHHHHhcC
Confidence 468999999999999885432 245678999999999999998876432110 000 0011100111111100
Q ss_pred -----ccCCCCCCCcHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCch-hhhhh
Q 043647 258 -----ITFSPNSLKDLNQIQVQLREA----VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCST-DVALT 327 (1096)
Q Consensus 258 -----l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~ 327 (1096)
+..........+++...+... ..+++-++|+|+++.-.....+.+...+......+.+|++|.+. .+...
T Consensus 86 ~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~t 165 (527)
T PRK14969 86 RFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 165 (527)
T ss_pred CCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchh
Confidence 000000111223332222211 24667799999998776666777777766544556666655443 22211
Q ss_pred c-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCch-hHHHH
Q 043647 328 V-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPL-AAETL 385 (1096)
Q Consensus 328 ~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 385 (1096)
+ .....+++++++.++..+.+.+.+-..+ . ....+....|++.++|.+- |+..+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~il~~eg-i---~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 166 VLSRCLQFNLKQMPPPLIVSHLQHILEQEN-I---PFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 1125688999999998887776653211 1 1233556788999999775 33333
No 108
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00015 Score=86.52 Aligned_cols=195 Identities=14% Similarity=0.161 Sum_probs=113.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+.......+ .-....+.....+.+...
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~-----~~~~~c~~c~~c~~i~~~ 86 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR----VAHAYLFTGPRGVGKTSTARILAKAVNCTTND-----PKGRPCGTCEMCRAIAEG 86 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCC-----CCCCCCccCHHHHHHhcC
Confidence 468999999999988885432 24567899999999999999888653211000 000111222333333322
Q ss_pred ccCC-----CCCCCcHHHHHHHH---HHH-hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCch-hhhhh
Q 043647 258 ITFS-----PNSLKDLNQIQVQL---REA-VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCST-DVALT 327 (1096)
Q Consensus 258 l~~~-----~~~~~~~~~~~~~l---~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~ 327 (1096)
.... .......+++...+ ... ..+++-++|+|+++.-.....+.+...+......+.+|++|.+. .+...
T Consensus 87 ~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 87 SAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHH
Confidence 2110 00112233332222 111 13567789999997665566777776665544556666665433 33221
Q ss_pred c-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHH
Q 043647 328 V-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETL 385 (1096)
Q Consensus 328 ~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 385 (1096)
+ .....+.+..++.++....+.+.+...+ . .-..+.+..|++.++|.+..+...
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~eg-l---~i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEG-I---NLEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 2235688899999998888877763322 1 122356778999999988655443
No 109
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.90 E-value=0.00013 Score=82.17 Aligned_cols=179 Identities=13% Similarity=0.111 Sum_probs=98.8
Q ss_pred CCccccchHHHHHHHHHHhcCCC--------CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChH
Q 043647 177 EPAVFGRDEDKAKILEMVLRDEP--------TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDIL 248 (1096)
Q Consensus 177 ~~~~vgr~~~~~~l~~~L~~~~~--------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~ 248 (1096)
..++.|+++.++++.+.+...-. +-...+-+.++|++|+|||++|+++++.... . |+.+.. .
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~-~-----~~~v~~----~ 190 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA-T-----FIRVVG----S 190 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC-C-----EEecch----H
Confidence 34689999999999887642210 1123456899999999999999999985432 2 122211 1
Q ss_pred HHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCC-----------hh---hHHHhhcccCC--CCCC
Q 043647 249 RITKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKN-----------YS---LWNTLKSPFRA--GASG 312 (1096)
Q Consensus 249 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~---~~~~l~~~l~~--~~~g 312 (1096)
.+..... + .....+...+...-...+.+|++|+++... .. .+..+...+.. ...+
T Consensus 191 ~l~~~~~---g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 261 (364)
T TIGR01242 191 ELVRKYI---G------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGN 261 (364)
T ss_pred HHHHHhh---h------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 1111110 0 011111112222223567899999986421 11 12222222221 1245
Q ss_pred cEEEEEcCchhhhh-hc----CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCc
Q 043647 313 SKILVTTCSTDVAL-TV----GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLP 379 (1096)
Q Consensus 313 s~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 379 (1096)
.+||.||....... .+ .-...+.++..+.++..++|..++.+..- ..... ...+++.+.|..
T Consensus 262 v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 262 VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred EEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-CccCC----HHHHHHHcCCCC
Confidence 67888887543221 11 12357889999999999999988743221 11112 346677777764
No 110
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=8.5e-06 Score=58.97 Aligned_cols=39 Identities=28% Similarity=0.409 Sum_probs=21.2
Q ss_pred ccceeecccccccccccccccCCCCcEEeccCcccCcccC
Q 043647 580 HLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLP 619 (1096)
Q Consensus 580 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp 619 (1096)
+|++|++++|.|+.+|+.+++|++|++|++++| .+.++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 455666666666666555666666666666664 344443
No 111
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00036 Score=82.62 Aligned_cols=189 Identities=14% Similarity=0.174 Sum_probs=107.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHH-
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILE- 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~- 256 (1096)
.+++|.+..++.+..++.... -.+.+.++|+.|+||||+|+.++...-..+.. ..+ .+-........
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~-~~~-------~pC~~C~~~~~~ 85 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKT-DLL-------EPCQECIENVNN 85 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC----CCeEEEEECCCCCcHHHHHHHHHHHhcccccC-CCC-------CchhHHHHhhcC
Confidence 368899999999999885432 24667899999999999998887643211000 000 00000000000
Q ss_pred -----hccCCC-CCCCcHHHHHHHHHHH-hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEE-EEcCchhhhhh-
Q 043647 257 -----SITFSP-NSLKDLNQIQVQLREA-VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKIL-VTTCSTDVALT- 327 (1096)
Q Consensus 257 -----~l~~~~-~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vTtR~~~v~~~- 327 (1096)
.+.... ...++..++...+... ..+++-++|+|++..-....+..+...+......+.+| +|++...+...
T Consensus 86 ~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI 165 (725)
T PRK07133 86 SLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTI 165 (725)
T ss_pred CCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHH
Confidence 000000 0111122333222221 23667799999997766667777777665544455544 44444444322
Q ss_pred cCCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhH
Q 043647 328 VGTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAA 382 (1096)
Q Consensus 328 ~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 382 (1096)
......+++.+++.++..+.+...+-..+ . ....+.+..|++.++|.+--+
T Consensus 166 ~SRcq~ieF~~L~~eeI~~~L~~il~keg-I---~id~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 166 LSRVQRFNFRRISEDEIVSRLEFILEKEN-I---SYEKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred HhhceeEEccCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHH
Confidence 22336899999999999888877653221 1 122355778999999976433
No 112
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00029 Score=82.11 Aligned_cols=197 Identities=15% Similarity=0.193 Sum_probs=113.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.+++|.+..+..|.+++.... -...+.++|+.|+||||+|+.+.+..... ..+. ..++.-...+.|..
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~ 84 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQ 84 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhc
Confidence 367898888888888885432 24678899999999999998888754221 1100 01111112222221
Q ss_pred hccC-----CCCCCCcHHHHH---HHHHH-HhCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCc-hhhhh
Q 043647 257 SITF-----SPNSLKDLNQIQ---VQLRE-AVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCS-TDVAL 326 (1096)
Q Consensus 257 ~l~~-----~~~~~~~~~~~~---~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~ 326 (1096)
.... ........+++. ..+.. -..+++-++|+|+++.-....++.+...+........+|++|.+ ..+..
T Consensus 85 g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~ 164 (624)
T PRK14959 85 GMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPV 164 (624)
T ss_pred CCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhH
Confidence 1100 000011122222 22211 12466779999999877666777777776543344556665544 33332
Q ss_pred hc-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCc-hhHHHHHHHh
Q 043647 327 TV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLP-LAAETLGGLL 389 (1096)
Q Consensus 327 ~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~~l 389 (1096)
.+ .....+++.+++.++....+...+...+ . .-..+.+..|++.++|.+ -|+..+...+
T Consensus 165 TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg-i---~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 165 TIVSRCQHFTFTRLSEAGLEAHLTKVLGREG-V---DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHhhhhccccCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 21 2235789999999999988887664322 1 123456778899999965 6777665544
No 113
>PLN03150 hypothetical protein; Provisional
Probab=97.88 E-value=1.5e-05 Score=95.88 Aligned_cols=96 Identities=23% Similarity=0.356 Sum_probs=82.1
Q ss_pred hhhhhcCCCCcceEEEecccccc-cCCCCcCCCCccceeeccccccc-ccccccccCCCCcEEeccCcccCcccCccccC
Q 043647 547 VLSNLLPKFTKLRVLSLKKYYIT-ELPHSIGDLKHLRYINLSETMIR-CLPESICSLCNLQFLILRGCYRLKKLPSNLRN 624 (1096)
Q Consensus 547 ~~~~~~~~~~~Lr~L~L~~~~~~-~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 624 (1096)
.++..+..+++|+.|+|++|.+. .+|..++.+.+|++|+|++|.+. .+|+.+++|.+|++|+|++|.....+|..++.
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence 34556788999999999999997 78999999999999999999998 78999999999999999998766789998865
Q ss_pred C-CCCceEEeccccccccC
Q 043647 625 L-INLRHLVVTYVDLIREM 642 (1096)
Q Consensus 625 l-~~L~~L~l~~~~~~~~~ 642 (1096)
+ .++..+++.+|..+...
T Consensus 513 ~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 513 RLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred ccccCceEEecCCccccCC
Confidence 4 57788888888644433
No 114
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00039 Score=82.12 Aligned_cols=195 Identities=14% Similarity=0.158 Sum_probs=110.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEE-ecCccChHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVC-VSDDFDILRITKSIL 255 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~-~~~~~~~~~~~~~i~ 255 (1096)
.+++|.+..+..+.+++..+. -...+.++|+.|+||||+|+.+.+..... ..+...|-. +..+...-...+.+.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~ 91 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFD 91 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHh
Confidence 468999999999888885432 24568899999999999998887653221 111011111 001111112222221
Q ss_pred HhccC-----CCCCCCcHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEc-Cchhhh
Q 043647 256 ESITF-----SPNSLKDLNQIQVQLREA----VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTT-CSTDVA 325 (1096)
Q Consensus 256 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v~ 325 (1096)
..-.. ........+++...+... ..+.+-++|+|+++.-.....+.+...+..-...+.+|++| +...+.
T Consensus 92 ~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl 171 (620)
T PRK14954 92 AGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (620)
T ss_pred ccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 11000 000112234443333222 24556688999997766666777777776544455555444 433333
Q ss_pred hh-cCCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCch
Q 043647 326 LT-VGTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPL 380 (1096)
Q Consensus 326 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL 380 (1096)
.. ......+++.+++.++....+.+.+-..+ . .-..+.+..|++.++|..-
T Consensus 172 ~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg-i---~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 172 ATIASRCQRFNFKRIPLDEIQSQLQMICRAEG-I---QIDADALQLIARKAQGSMR 223 (620)
T ss_pred HHHHhhceEEecCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHhCCCHH
Confidence 22 23346799999999998877776553211 1 1234567789999999654
No 115
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00038 Score=81.52 Aligned_cols=197 Identities=14% Similarity=0.138 Sum_probs=113.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+..... ..+ + .+.+.-...+.|..
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~~ 81 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALAP 81 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhhc
Confidence 468999999999999985432 24567899999999999999888753211 110 0 01111111112111
Q ss_pred h---------ccCCC-CCCCcHHHHHHHHHHH-hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEc-Cchhh
Q 043647 257 S---------ITFSP-NSLKDLNQIQVQLREA-VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTT-CSTDV 324 (1096)
Q Consensus 257 ~---------l~~~~-~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v 324 (1096)
. +.... ...++..++...+... ..+++-++|+|++..-.....+.+...+..-.....+|++| ....+
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 0 00000 0112222222222221 23566789999998777777888877776655556655554 44433
Q ss_pred hhhc-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCch-hHHHHHHHh
Q 043647 325 ALTV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPL-AAETLGGLL 389 (1096)
Q Consensus 325 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~~l 389 (1096)
...+ .....+++..++.++..+.+.+.+-..+ . .-..+....|++..+|.+- |+..+-.++
T Consensus 162 l~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~eg-i---~i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 162 LPTIRSRTHHYPFRLLPPRTMRALIARICEQEG-V---VVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred HHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3222 2346799999999998888877663222 1 1123456778999999774 444444433
No 116
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00037 Score=85.06 Aligned_cols=190 Identities=12% Similarity=0.084 Sum_probs=110.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.+++|.+..++.|..++.... -.+.+.++|+.|+||||+|+.+.+..... ..+. ..+..-...+.|..
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~~ 83 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALAP 83 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHHc
Confidence 368999999999999885432 23567899999999999999887754321 1100 00011111111111
Q ss_pred h-------ccCCCCCCCcHHHHHHHHHH----HhCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCch-hh
Q 043647 257 S-------ITFSPNSLKDLNQIQVQLRE----AVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCST-DV 324 (1096)
Q Consensus 257 ~-------l~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v 324 (1096)
. +.........++++.....+ -..+++-++|||+++......++.|+..+..-...+.+|++|.+. .+
T Consensus 84 g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kL 163 (824)
T PRK07764 84 GGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKV 163 (824)
T ss_pred CCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 1 00000011123333322111 134566689999998877777888888877655566666555433 33
Q ss_pred hhhc-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhH
Q 043647 325 ALTV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAA 382 (1096)
Q Consensus 325 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 382 (1096)
...+ .....|++..++.++..+.+.+.+-..+ . .-..+....|++.++|.+..+
T Consensus 164 l~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG-v---~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 164 IGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG-V---PVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHH
Confidence 3222 2346789999999998888876552211 1 112345567899999987443
No 117
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00056 Score=77.43 Aligned_cols=177 Identities=16% Similarity=0.234 Sum_probs=104.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-------ccCcEEEEEecCccChHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-------MFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------~f~~~~wv~~~~~~~~~~~ 250 (1096)
.+++|.+..++.+.+++.... -.+.+.++|+.|+||||+|+.+.+..... .|...+ +....
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~~------- 84 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELDA------- 84 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEecc-------
Confidence 357899999999999885432 24688899999999999999887643221 111111 00100
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcC-chhhh
Q 043647 251 TKSILESITFSPNSLKDLNQIQVQLREA----VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTC-STDVA 325 (1096)
Q Consensus 251 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v~ 325 (1096)
......+++...+.+. ..+++-++|+|++.......++.+...+......+.+|++|. ...+.
T Consensus 85 ------------~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 85 ------------ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred ------------ccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 0111122222222211 134566899999976555567777665544334455555553 32322
Q ss_pred hhc-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhH
Q 043647 326 LTV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAA 382 (1096)
Q Consensus 326 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 382 (1096)
..+ .....+++.+++.++....+...+...+ . .-..+.+..|++.++|.+-.+
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g-~---~i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAVKEG-I---KFEDDALHIIAQKADGALRDA 206 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHhCCCCHHHH
Confidence 221 2235789999999999888887764322 1 112467778888999866533
No 118
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=0.00037 Score=75.71 Aligned_cols=177 Identities=15% Similarity=0.095 Sum_probs=111.8
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHH
Q 043647 176 TEPAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSI 254 (1096)
Q Consensus 176 ~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i 254 (1096)
.+..++||+.+++.+.+|+...- .....+-+.|.|-+|.|||.+...++.+.... .--.++++++..-....+++..|
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hl-e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHL-ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhh-hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 35678999999999999996543 23456789999999999999999999876544 22245777776656778888888
Q ss_pred HHhccCCCCCCCcHHHHHHHHHHHhCC--CcEEEEEecCCCCChhhHHHhhcccCC-CCCCcEEEEEcCch--h----hh
Q 043647 255 LESITFSPNSLKDLNQIQVQLREAVAG--KRFLIVLDDVWSKNYSLWNTLKSPFRA-GASGSKILVTTCST--D----VA 325 (1096)
Q Consensus 255 ~~~l~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtR~~--~----v~ 325 (1096)
...+...........+....+.+...+ .-+++|+|.++.-....-..+...|.| .-+++|+|+.---. + ..
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHh
Confidence 877722211111224455566655543 368999999854321122223333332 23566655432111 0 11
Q ss_pred hhc-----CCcceeeCCCCChHhHHHHHHHhhc
Q 043647 326 LTV-----GTAEYYNLKLLSDDDCWSVFVKHAF 353 (1096)
Q Consensus 326 ~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~ 353 (1096)
..+ .....+..++.+.++-.+++..+.-
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 111 1224677889999999999998873
No 119
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=1.9e-05 Score=57.16 Aligned_cols=40 Identities=33% Similarity=0.482 Sum_probs=29.1
Q ss_pred CcceEEEecccccccCCCCcCCCCccceeecccccccccc
Q 043647 556 TKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLP 595 (1096)
Q Consensus 556 ~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp 595 (1096)
++|++|++++|.++.+|..+++|++|++|++++|.|+.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4677888888888877777778888888888888777664
No 120
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.81 E-value=0.00021 Score=81.96 Aligned_cols=168 Identities=10% Similarity=0.099 Sum_probs=101.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccc-cCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCC
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEM-FNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGK 282 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 282 (1096)
..-+.|+|..|+|||+|++++.+...... -..+++++ ..++...+...+.... .....+++.++ .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC-Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-c
Confidence 34588999999999999999988543221 12334443 3456667666654210 11223444443 3
Q ss_pred cEEEEEecCCCCCh-hhH-HHhhcccCC-CCCCcEEEEEcCch---------hhhhhcCCcceeeCCCCChHhHHHHHHH
Q 043647 283 RFLIVLDDVWSKNY-SLW-NTLKSPFRA-GASGSKILVTTCST---------DVALTVGTAEYYNLKLLSDDDCWSVFVK 350 (1096)
Q Consensus 283 r~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 350 (1096)
.-+||+||+..... ..+ +.+...+.. ...|..||+|+... .+...+...-.+.+++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 44788999965421 122 233222221 12355788886532 2333344556788999999999999998
Q ss_pred hhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHHH
Q 043647 351 HAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGG 387 (1096)
Q Consensus 351 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 387 (1096)
++-..+ .. ..-..++..-|++.+.|.|-.+.-+..
T Consensus 287 ~~~~~g-l~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 287 EIKNQN-IK-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHhcC-CC-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 883221 10 123357778899999999877665543
No 121
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00064 Score=78.39 Aligned_cols=193 Identities=15% Similarity=0.153 Sum_probs=111.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.+++|-+..++.+..++... .-.+++.++|+.|+||||+|+.+.+..... ..+. .+...-.....+..
T Consensus 14 deiiGqe~v~~~L~~~I~~g----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~~~~ 82 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQSALE 82 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHhh
Confidence 46899999999999888443 234567899999999999998777643211 0000 00000000011100
Q ss_pred hcc-----CCCCCCCcHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCch-hhhh
Q 043647 257 SIT-----FSPNSLKDLNQIQVQLREA----VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCST-DVAL 326 (1096)
Q Consensus 257 ~l~-----~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~ 326 (1096)
... .........+++...+... ..+++-++|+|++..-.....+.+...+......+++|++|.+. .+..
T Consensus 83 ~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~ 162 (535)
T PRK08451 83 NRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPA 162 (535)
T ss_pred cCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCch
Confidence 000 0000011233433333221 12566789999998777677777777766555567767666553 2211
Q ss_pred hc-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHH
Q 043647 327 TV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETL 385 (1096)
Q Consensus 327 ~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 385 (1096)
.+ .....+++.+++.++..+.+.+.+-..+ . .-..+.+..|++.++|.+--+..+
T Consensus 163 tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EG-i---~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 163 TILSRTQHFRFKQIPQNSIISHLKTILEKEG-V---SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred HHHhhceeEEcCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 11 2235789999999999888876663222 1 123466788999999988554443
No 122
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00085 Score=77.53 Aligned_cols=195 Identities=13% Similarity=0.120 Sum_probs=107.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHH-
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILE- 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~- 256 (1096)
.+++|.+.-+..+.+++.... -.+.+.++|+.|+||||+|+.++.......-. - ..+.+.-.-...+..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~--~----~~pc~~c~nc~~i~~g 85 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQ--E----GEPCGKCENCVEIDKG 85 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCC--C----CCCCCccHHHHHHhcC
Confidence 368899999999999885432 24567789999999999998887643210000 0 000000000000000
Q ss_pred ------hccCCC-CCCCcHHHHHHHHHHH-hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEc-Cchhhhhh
Q 043647 257 ------SITFSP-NSLKDLNQIQVQLREA-VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTT-CSTDVALT 327 (1096)
Q Consensus 257 ------~l~~~~-~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~~ 327 (1096)
.+.... ...++...+...+... ..+++-++|+|+++.-.....+.+...+........+|++| +...+...
T Consensus 86 ~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~t 165 (486)
T PRK14953 86 SFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPT 165 (486)
T ss_pred CCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHH
Confidence 000000 0111122222222211 24667799999997665566677766665544455555554 43333222
Q ss_pred -cCCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHH
Q 043647 328 -VGTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLG 386 (1096)
Q Consensus 328 -~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 386 (1096)
......+.+.+++.++....+.+.+-..+ . .-..+.+..|++.++|.+-.+....
T Consensus 166 I~SRc~~i~f~~ls~~el~~~L~~i~k~eg-i---~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 166 ILSRCQRFIFSKPTKEQIKEYLKRICNEEK-I---EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred HHHhceEEEcCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 12235789999999998888877663222 1 1233566778899999776544433
No 123
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.78 E-value=0.00015 Score=80.56 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=72.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.++++.++..+.+...|... +.|.++|++|+|||++|+.+++..... .|+.+.||.++..++..++...+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~-------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r- 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK-------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR- 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC-------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC-
Confidence 45788899999999998542 468889999999999999999876555 788899999998887666654221
Q ss_pred hccCCCCCCCcHH-HHHHHHHHHh--CCCcEEEEEecCCCCCh
Q 043647 257 SITFSPNSLKDLN-QIQVQLREAV--AGKRFLIVLDDVWSKNY 296 (1096)
Q Consensus 257 ~l~~~~~~~~~~~-~~~~~l~~~l--~~kr~LlVlDdv~~~~~ 296 (1096)
.......-.. ...+.+.... .++++++|+|++...+.
T Consensus 247 ---P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani 286 (459)
T PRK11331 247 ---PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL 286 (459)
T ss_pred ---CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH
Confidence 1100000000 1112222222 24789999999976543
No 124
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.77 E-value=0.0002 Score=73.41 Aligned_cols=183 Identities=17% Similarity=0.191 Sum_probs=111.4
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEE-EEEecCccChHHHHHHH
Q 043647 177 EPAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRS-WVCVSDDFDILRITKSI 254 (1096)
Q Consensus 177 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~-wv~~~~~~~~~~~~~~i 254 (1096)
-.+++|.+..+..+.+.+.. ...++...+|++|.|||+-|++.+...... -|.+++ -.++|..-... +.+
T Consensus 35 ~de~~gQe~vV~~L~~a~~~-----~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr-- 106 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR-----RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVR-- 106 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh-----cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chh--
Confidence 35688999999999998865 246789999999999999998887754333 343333 23333332211 000
Q ss_pred HHhccCCCCCCCcHHHHHHHHHHHh--CCCc-EEEEEecCCCCChhhHHHhhcccCCCCCCcEEE-EEcCchhhhhhc-C
Q 043647 255 LESITFSPNSLKDLNQIQVQLREAV--AGKR-FLIVLDDVWSKNYSLWNTLKSPFRAGASGSKIL-VTTCSTDVALTV-G 329 (1096)
Q Consensus 255 ~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vTtR~~~v~~~~-~ 329 (1096)
....+...+........ ..++ -.+|||+++....+.|..+...+......++.| ||+.-..+...+ .
T Consensus 107 --------~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 107 --------EKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred --------hhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 01111111111110000 0122 478999999888899999998887766666644 444333322221 1
Q ss_pred CcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCc
Q 043647 330 TAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLP 379 (1096)
Q Consensus 330 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 379 (1096)
.-..|..++|..++...-+...+-..+- +-..+..+.|++.++|.-
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v----~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGV----DIDDDALKLIAKISDGDL 224 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCcH
Confidence 1246889999999998888777733221 223456678999998854
No 125
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.77 E-value=0.00027 Score=78.35 Aligned_cols=147 Identities=14% Similarity=0.151 Sum_probs=83.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
.+++|.++..+.+..++... .-..++.++|++|+||||+|+.+++.... ....++.+. .... ..+..+..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~----~~~~~lll~G~~G~GKT~la~~l~~~~~~----~~~~i~~~~-~~~~-~i~~~l~~ 90 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG----RIPNMLLHSPSPGTGKTTVAKALCNEVGA----EVLFVNGSD-CRID-FVRNRLTR 90 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC----CCCeEEEeeCcCCCCHHHHHHHHHHHhCc----cceEeccCc-ccHH-HHHHHHHH
Confidence 46899999999999988532 23467778999999999999999875321 122333333 1111 11111110
Q ss_pred ccCCCCCCCcHHHHHHHHHH-HhCCCcEEEEEecCCCC-ChhhHHHhhcccCCCCCCcEEEEEcCchhhh-hhc-CCcce
Q 043647 258 ITFSPNSLKDLNQIQVQLRE-AVAGKRFLIVLDDVWSK-NYSLWNTLKSPFRAGASGSKILVTTCSTDVA-LTV-GTAEY 333 (1096)
Q Consensus 258 l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~-~~~-~~~~~ 333 (1096)
. ... ...+.+-++|+||++.. .....+.+...+.....++++|+||...... ..+ .....
T Consensus 91 ~----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 91 F----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred H----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceE
Confidence 0 000 01234568899999654 2223333443344445677888888654311 111 12235
Q ss_pred eeCCCCChHhHHHHHHH
Q 043647 334 YNLKLLSDDDCWSVFVK 350 (1096)
Q Consensus 334 ~~l~~L~~~~~~~lf~~ 350 (1096)
+.++..+.++..+++..
T Consensus 155 i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 67777777777665543
No 126
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.00092 Score=79.53 Aligned_cols=196 Identities=14% Similarity=0.172 Sum_probs=112.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
.+++|.+..+..|..++.... -.+.+.++|+.|+||||+|+.+++.......+... ......-...+.+...
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~----~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR----IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPT----PEPCGKCELCRAIAAG 87 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC----CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCC----CCCCcccHHHHHHhcC
Confidence 368899999999998885432 23567899999999999999988754322111000 0111122233333322
Q ss_pred ccC-----CCCCCCcHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCch-hhhhh
Q 043647 258 ITF-----SPNSLKDLNQIQVQLREA----VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCST-DVALT 327 (1096)
Q Consensus 258 l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~ 327 (1096)
... ........+++...+... ..+++-++|+|+++.-....++.+...+..-...+.+|++|.+. .+...
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHH
Confidence 111 011112233333333221 13566789999998776667777877766544445555554433 33222
Q ss_pred c-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHH
Q 043647 328 V-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETL 385 (1096)
Q Consensus 328 ~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 385 (1096)
+ .....+++..++.++....+.+.+-..+ . .-..+.+..|++.++|.+..+..+
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~keg-i---~is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKES-I---EIEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhC-C---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 2235688889999888877776653211 1 112355778999999988655443
No 127
>PRK06620 hypothetical protein; Validated
Probab=97.73 E-value=0.00082 Score=68.85 Aligned_cols=136 Identities=14% Similarity=0.033 Sum_probs=78.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcE
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKRF 284 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 284 (1096)
+.+.|+|++|+|||+|++++.+.... .++. ..+.. + +.. +..-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~------~~~~--~~~~~---------------------~-------~~~-~~~d 87 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA------YIIK--DIFFN---------------------E-------EIL-EKYN 87 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC------EEcc--hhhhc---------------------h-------hHH-hcCC
Confidence 56899999999999999987764321 1111 00000 0 011 1234
Q ss_pred EEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchh-------hhhhcCCcceeeCCCCChHhHHHHHHHhhcCCCC
Q 043647 285 LIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTD-------VALTVGTAEYYNLKLLSDDDCWSVFVKHAFEKRD 357 (1096)
Q Consensus 285 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 357 (1096)
++++||+..........+...+. ..|..||+|++.+. ....+....++++++++.++-..++.+.+.. ..
T Consensus 88 ~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~-~~ 164 (214)
T PRK06620 88 AFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI-SS 164 (214)
T ss_pred EEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH-cC
Confidence 78899996332112222222222 34668999987443 2233344558999999999988888777632 11
Q ss_pred CCCCcchhHHHHHHHHHhCCCchhHH
Q 043647 358 VGLHRHMGSIRKKVVQKCRGLPLAAE 383 (1096)
Q Consensus 358 ~~~~~~~~~~~~~i~~~~~g~PLai~ 383 (1096)
. .-.+++..-|++.+.|.--.+.
T Consensus 165 l---~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 165 V---TISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred C---CCCHHHHHHHHHHccCCHHHHH
Confidence 1 2234666778888777654433
No 128
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.70 E-value=0.00021 Score=75.45 Aligned_cols=166 Identities=15% Similarity=0.219 Sum_probs=103.7
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHH
Q 043647 177 EPAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 177 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
++.+.+|+.++..+...+..... .-+..|-|+|-.|.|||.+.+++++.... ..+|+++-+.++...++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~--~~PS~~~iyG~sgTGKT~~~r~~l~~~n~----~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC--TIPSIVHIYGHSGTGKTYLVRQLLRKLNL----ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc--ccceeEEEeccCCCchhHHHHHHHhhcCC----cceeeehHHhccHHHHHHHHHH
Confidence 45688999999999998855432 23566689999999999999999986532 3679999999999999999999
Q ss_pred hccCCCCCCC-------cHHHHHHHHHHH--h--CCCcEEEEEecCCCCChhhHHH-----hhcccCCCCCCcEEEEEcC
Q 043647 257 SITFSPNSLK-------DLNQIQVQLREA--V--AGKRFLIVLDDVWSKNYSLWNT-----LKSPFRAGASGSKILVTTC 320 (1096)
Q Consensus 257 ~l~~~~~~~~-------~~~~~~~~l~~~--l--~~kr~LlVlDdv~~~~~~~~~~-----l~~~l~~~~~gs~iivTtR 320 (1096)
+.+..+.+.. ........+.++ . +++.++||||+++.- .+.+. +...-.-.....-+|+++-
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l--rD~~a~ll~~l~~L~el~~~~~i~iils~ 156 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL--RDMDAILLQCLFRLYELLNEPTIVIILSA 156 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh--hccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 9963322221 122233333331 2 256899999999543 22111 1111000111233444444
Q ss_pred chhhhhh---cCCcc--eeeCCCCChHhHHHHHHH
Q 043647 321 STDVALT---VGTAE--YYNLKLLSDDDCWSVFVK 350 (1096)
Q Consensus 321 ~~~v~~~---~~~~~--~~~l~~L~~~~~~~lf~~ 350 (1096)
..-.... ++... ++..+.-+.+|-.+++.+
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 3322222 23333 455677788888888754
No 129
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.67 E-value=6.9e-06 Score=94.46 Aligned_cols=101 Identities=28% Similarity=0.374 Sum_probs=77.0
Q ss_pred hcCCCCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCce
Q 043647 551 LLPKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRH 630 (1096)
Q Consensus 551 ~~~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 630 (1096)
.+..++.|..|++.+|.|..+...+..+.+|++|++++|.|+.+ ..+..+..|+.|++++| .+..++. +..+++|+.
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN-LISDISG-LESLKSLKL 166 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccC-cchhccC-Cccchhhhc
Confidence 36778889999999999888876688889999999999998887 34677788999999985 6766654 666888999
Q ss_pred EEeccccccccCccc-CCCCCCCCcC
Q 043647 631 LVVTYVDLIREMPLG-IKELKCLQML 655 (1096)
Q Consensus 631 L~l~~~~~~~~~p~~-i~~L~~L~~L 655 (1096)
+++++|. +..+... ...+.+|+.+
T Consensus 167 l~l~~n~-i~~ie~~~~~~~~~l~~l 191 (414)
T KOG0531|consen 167 LDLSYNR-IVDIENDELSELISLEEL 191 (414)
T ss_pred ccCCcch-hhhhhhhhhhhccchHHH
Confidence 9998887 5555432 3555555554
No 130
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.66 E-value=0.00092 Score=76.77 Aligned_cols=188 Identities=15% Similarity=0.185 Sum_probs=104.4
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc--ccCcEEEEEecCccChHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE--MFNLRSWVCVSDDFDILRITKSIL 255 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~f~~~~wv~~~~~~~~~~~~~~i~ 255 (1096)
.+++|.+..+..+.+++.... -.+.+.++|+.|+||||+|+.+.+..... ..+.... ..-...+.+.
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c-------~~c~~C~~i~ 85 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPC-------NQCASCKEIS 85 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCC-------cccHHHHHHh
Confidence 468999999999998885432 24668899999999999998887643211 0000000 0000000000
Q ss_pred H-------hccCCC-CCCCcHHHHHHHHHHH-hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCch-hhh
Q 043647 256 E-------SITFSP-NSLKDLNQIQVQLREA-VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCST-DVA 325 (1096)
Q Consensus 256 ~-------~l~~~~-~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~ 325 (1096)
. .+.+.. ...++..++...+... ..+++-++|+|+++.......+.+...+........+|++|... .+.
T Consensus 86 ~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~ 165 (451)
T PRK06305 86 SGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIP 165 (451)
T ss_pred cCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcc
Confidence 0 000000 0011122222211111 23667789999997655455666666665544456666666432 222
Q ss_pred hhc-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCch
Q 043647 326 LTV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPL 380 (1096)
Q Consensus 326 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL 380 (1096)
..+ .....+++.++++++....+.+.+-..+ . .-..+.+..|++.++|.+-
T Consensus 166 ~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg-~---~i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 166 GTILSRCQKMHLKRIPEETIIDKLALIAKQEG-I---ETSREALLPIARAAQGSLR 217 (451)
T ss_pred hHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHH
Confidence 211 2235789999999998888877653211 1 1234567789999999764
No 131
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.0013 Score=78.21 Aligned_cols=192 Identities=15% Similarity=0.164 Sum_probs=109.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
.+++|.+..++.+..++.... -.+.+.++|+.|+||||+|+.+........... -+ ...+.-...+.+-..
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~-~~----~~Cg~C~sC~~~~~~ 87 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTA-DG----EACNECESCVAFNEQ 87 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CC----CCCCcchHHHHHhcC
Confidence 468999999999999985432 245688999999999999988776432110000 00 000000000000000
Q ss_pred cc-----CCCCCCCcHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEc-Cchhhhhh
Q 043647 258 IT-----FSPNSLKDLNQIQVQLREA----VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTT-CSTDVALT 327 (1096)
Q Consensus 258 l~-----~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~~ 327 (1096)
-. ....+....+++...+.+. ..+++-++|+|++..-....++.+...+..-...+.+|++| +...+...
T Consensus 88 ~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~t 167 (614)
T PRK14971 88 RSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPT 167 (614)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHH
Confidence 00 0000111223333333211 23456688999998776677888887776655566655544 44444332
Q ss_pred c-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhH
Q 043647 328 V-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAA 382 (1096)
Q Consensus 328 ~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 382 (1096)
+ .....+++.+++.++....+.+.+-..+ . ....+.+..|++.++|..--+
T Consensus 168 I~SRc~iv~f~~ls~~ei~~~L~~ia~~eg-i---~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 168 ILSRCQIFDFNRIQVADIVNHLQYVASKEG-I---TAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred HHhhhheeecCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHH
Confidence 2 2346799999999999888887663222 1 122356778999999976543
No 132
>CHL00181 cbbX CbbX; Provisional
Probab=97.65 E-value=0.0018 Score=69.54 Aligned_cols=133 Identities=11% Similarity=0.035 Sum_probs=72.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcccccccc-CcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMF-NLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKR 283 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 283 (1096)
..+.++|++|+||||+|+.+++......+ ...-|+.++. .++... ..+.. .......+.+. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~----~~g~~-----~~~~~~~l~~a---~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQ----YIGHT-----APKTKEVLKKA---MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHH----Hhccc-----hHHHHHHHHHc---cC
Confidence 45889999999999999999774322111 1112444441 122221 11111 11112222221 23
Q ss_pred EEEEEecCCCC---------ChhhHHHhhcccCCCCCCcEEEEEcCchhhhhhc--------CCcceeeCCCCChHhHHH
Q 043647 284 FLIVLDDVWSK---------NYSLWNTLKSPFRAGASGSKILVTTCSTDVALTV--------GTAEYYNLKLLSDDDCWS 346 (1096)
Q Consensus 284 ~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~~ 346 (1096)
-+|++|++..- ..+..+.+...+.....+.+||.++....+.... .....+.+++++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 48999999642 1123334444444444456777777644332111 112468899999999999
Q ss_pred HHHHhhc
Q 043647 347 VFVKHAF 353 (1096)
Q Consensus 347 lf~~~a~ 353 (1096)
++...+-
T Consensus 204 I~~~~l~ 210 (287)
T CHL00181 204 IAKIMLE 210 (287)
T ss_pred HHHHHHH
Confidence 9888773
No 133
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.65 E-value=0.00075 Score=72.13 Aligned_cols=159 Identities=14% Similarity=0.115 Sum_probs=80.1
Q ss_pred ccccchHHHHHHHH---HHhc-------CCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccCh
Q 043647 179 AVFGRDEDKAKILE---MVLR-------DEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDI 247 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~---~L~~-------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~ 247 (1096)
.++|.+..+++|.+ +... .-...+....+.++|++|+||||+|+.+++..... .-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 47888776665543 3211 01112345678899999999999999997643111 1111123333221
Q ss_pred HHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCC--------hhhHHHhhcccCCCCCCcEEEEEc
Q 043647 248 LRITKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKN--------YSLWNTLKSPFRAGASGSKILVTT 319 (1096)
Q Consensus 248 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTt 319 (1096)
++.. ...+ .........+.+. ..-+|++|++..-. .+..+.+...+........+|+++
T Consensus 84 -~l~~----~~~g-----~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 -DLVG----EYIG-----HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred -Hhhh----hhcc-----chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 1111 1100 0111122222221 23488999996421 123444544444433333555555
Q ss_pred Cchhhhh------hc-C-CcceeeCCCCChHhHHHHHHHhhc
Q 043647 320 CSTDVAL------TV-G-TAEYYNLKLLSDDDCWSVFVKHAF 353 (1096)
Q Consensus 320 R~~~v~~------~~-~-~~~~~~l~~L~~~~~~~lf~~~a~ 353 (1096)
...+... .+ . -...+.+++++.++-.+++.+.+.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 4332211 00 1 124578899999999999987763
No 134
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.64 E-value=0.00049 Score=85.22 Aligned_cols=180 Identities=14% Similarity=0.131 Sum_probs=95.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-----ccCcEEE-EEecCccChHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-----MFNLRSW-VCVSDDFDILRIT 251 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~f~~~~w-v~~~~~~~~~~~~ 251 (1096)
+.++||++++.+++..|.... ..-+.++|.+|+||||+|+.+++..... -.+..+| +.++.-
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~-----~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l------- 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR-----QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL------- 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC-----cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh-------
Confidence 468999999999999885542 3356799999999999999888753211 1223333 222110
Q ss_pred HHHHHhccCCCCCCCcH-HHHHHHHHHHh-CCCcEEEEEecCCCCC-------hhhHHHhhcccCCCCCC-cEEEEEcCc
Q 043647 252 KSILESITFSPNSLKDL-NQIQVQLREAV-AGKRFLIVLDDVWSKN-------YSLWNTLKSPFRAGASG-SKILVTTCS 321 (1096)
Q Consensus 252 ~~i~~~l~~~~~~~~~~-~~~~~~l~~~l-~~kr~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~g-s~iivTtR~ 321 (1096)
........+. +.+...+.+.- .+++.+|++|++..-. ..+-..+..+.. ..| -++|-||..
T Consensus 255 -------~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l--~~G~l~~IgaTT~ 325 (852)
T TIGR03345 255 -------QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL--ARGELRTIAATTW 325 (852)
T ss_pred -------hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh--hCCCeEEEEecCH
Confidence 0000001111 12222232222 2578999999986431 111111222221 233 456666655
Q ss_pred hhhhhhc-------CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCC
Q 043647 322 TDVALTV-------GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGL 378 (1096)
Q Consensus 322 ~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 378 (1096)
.+....+ .....+.+++++.++..+++....-.-.....-.-..+....+++.+.++
T Consensus 326 ~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 326 AEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 3332111 22357999999999999997544311111011111234445666666554
No 135
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.63 E-value=0.00052 Score=84.47 Aligned_cols=154 Identities=16% Similarity=0.193 Sum_probs=85.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-----ccCcEEEEEecCccChHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-----MFNLRSWVCVSDDFDILRITK 252 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~f~~~~wv~~~~~~~~~~~~~ 252 (1096)
+.++||++++++++..|.... ..-+.++|++|+|||++|+.+++..... ..+..+|.. +...+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~-----~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l-- 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK-----KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSL-- 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC-----CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHH--
Confidence 358999999999999885442 3346799999999999999988754221 113444431 11111
Q ss_pred HHHHhccCCCCCCCcHHHHHHHHHHHh-CCCcEEEEEecCCCCC---------hhhHHHhhcccCCCCCC-cEEEEEcCc
Q 043647 253 SILESITFSPNSLKDLNQIQVQLREAV-AGKRFLIVLDDVWSKN---------YSLWNTLKSPFRAGASG-SKILVTTCS 321 (1096)
Q Consensus 253 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~g-s~iivTtR~ 321 (1096)
... . ....+.++....+-+.+ +.++.+|++|++..-. .+.-+.+...+. .| -++|-+|..
T Consensus 250 --~a~---~-~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaTt~ 320 (731)
T TIGR02639 250 --LAG---T-KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGSTTY 320 (731)
T ss_pred --hhh---c-cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEecCH
Confidence 100 0 00112223222333322 3568999999986321 111222332222 23 345555543
Q ss_pred hhhhhhc-------CCcceeeCCCCChHhHHHHHHHhh
Q 043647 322 TDVALTV-------GTAEYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 322 ~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 352 (1096)
.+....+ .....+.++.++.++..+++....
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 2221111 123578999999999999998655
No 136
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=5.8e-07 Score=90.50 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=18.8
Q ss_pred CCccEEEEccCCCcccc--hhhcCCCCCcCeEEEecCC
Q 043647 892 RALQQLEILDCPKLESI--AERFHNNTSLGCIWIWKCE 927 (1096)
Q Consensus 892 ~~L~~L~L~~~~~l~~l--~~~~~~l~~L~~L~l~~c~ 927 (1096)
.+|+.|+|+.|..++.. ...+.+|+.|..|+++.|.
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF 271 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh
Confidence 35555566555555443 2223555555555555554
No 137
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.62 E-value=0.00044 Score=78.19 Aligned_cols=177 Identities=14% Similarity=0.132 Sum_probs=95.9
Q ss_pred CccccchHHHHHHHHHHhcCC--------CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDE--------PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILR 249 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~--------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~ 249 (1096)
+++.|+++.++++.+.+...- -+-...+-|.++|++|+|||++|+++++..... |+.++. .+
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~------~i~v~~----~~ 200 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT------FIRVVG----SE 200 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC------EEEeeh----HH
Confidence 468899999999888663210 011335678999999999999999999753321 232221 11
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCC-----------ChhhHHHhhccc---CC--CCCCc
Q 043647 250 ITKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSK-----------NYSLWNTLKSPF---RA--GASGS 313 (1096)
Q Consensus 250 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l---~~--~~~gs 313 (1096)
+.. ...+ .....+...+...-...+.+|+||+++.- +...+..+...+ .. ...+.
T Consensus 201 l~~----~~~g-----~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v 271 (389)
T PRK03992 201 LVQ----KFIG-----EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNV 271 (389)
T ss_pred HhH----hhcc-----chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCE
Confidence 111 1110 11111112222222356789999999642 111122222222 11 12355
Q ss_pred EEEEEcCchhhhhh-c----CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCC
Q 043647 314 KILVTTCSTDVALT-V----GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGL 378 (1096)
Q Consensus 314 ~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 378 (1096)
.||.||...+.... + .-...+.++..+.++..++|..++.+.. ...... ...+++.+.|.
T Consensus 272 ~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~-~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 272 KIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMN-LADDVD----LEELAELTEGA 336 (389)
T ss_pred EEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCC-CCCcCC----HHHHHHHcCCC
Confidence 77778765432221 1 1135689999999999999988774321 111122 24566666664
No 138
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.61 E-value=0.0019 Score=75.98 Aligned_cols=191 Identities=16% Similarity=0.139 Sum_probs=111.5
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.+++|-+..+..+..++.... -.+.+.++|+.|+||||+|+.+++..... ..+. ..+... ...+.+..
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C----~~C~~i~~ 84 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGEC----SSCKSIDN 84 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccc----hHHHHHHc
Confidence 468999999999999985432 34578899999999999999988753211 1000 000000 01111111
Q ss_pred hccC-----CCCCCCcHHHHHHHH---HHH-hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCch-hhhh
Q 043647 257 SITF-----SPNSLKDLNQIQVQL---REA-VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCST-DVAL 326 (1096)
Q Consensus 257 ~l~~-----~~~~~~~~~~~~~~l---~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~ 326 (1096)
.-.. ........+++.... ... ..+++-++|+|++..-....++.+...+......+.+|.+|... .+..
T Consensus 85 ~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~ 164 (563)
T PRK06647 85 DNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPA 164 (563)
T ss_pred CCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHH
Confidence 1000 000112233332222 211 24667789999998776677788877776544566666665433 3322
Q ss_pred hc-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHH
Q 043647 327 TV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAE 383 (1096)
Q Consensus 327 ~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 383 (1096)
.+ .....+++.+++.++..+.+.+.+...+ . +-..+.+..|++.++|.+-.+.
T Consensus 165 tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg-i---~id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 165 TIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ-I---KYEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHHHhceEEEecCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHH
Confidence 21 2235688999999998888877663322 1 2234666778999999875443
No 139
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.60 E-value=0.002 Score=73.87 Aligned_cols=160 Identities=14% Similarity=0.150 Sum_probs=92.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccccc-CcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCC
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMF-NLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGK 282 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 282 (1096)
...+.|+|..|+|||+||+++++....... ..++++++ .++...+...+... ..+. +.+.+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~~- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEE----FKEKYRS- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHH----HHHHHHh-
Confidence 356899999999999999999986543222 23555543 34444455444321 2222 2333332
Q ss_pred cEEEEEecCCCCChh-hH-HHhhcccCC-CCCCcEEEEEcCc-hh--------hhhhcCCcceeeCCCCChHhHHHHHHH
Q 043647 283 RFLIVLDDVWSKNYS-LW-NTLKSPFRA-GASGSKILVTTCS-TD--------VALTVGTAEYYNLKLLSDDDCWSVFVK 350 (1096)
Q Consensus 283 r~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~iivTtR~-~~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 350 (1096)
.-+|||||++..... .+ +.+...+.. ...|..+|+|+.. +. +...+.....+.+++.+.++-.+++.+
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 348889999653211 11 223222221 1234567777753 22 222223335688999999999999998
Q ss_pred hhcCCCCCCCCcchhHHHHHHHHHhCCCchhHH
Q 043647 351 HAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAE 383 (1096)
Q Consensus 351 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 383 (1096)
.+-..+ . .-..++...|++.+.|..-.+.
T Consensus 280 ~~~~~~-~---~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 280 KAEEEG-L---ELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHcC-C---CCCHHHHHHHHHhcCCCHHHHH
Confidence 874321 1 2235677788888888765433
No 140
>PF14516 AAA_35: AAA-like domain
Probab=97.58 E-value=0.0029 Score=69.87 Aligned_cols=202 Identities=12% Similarity=0.103 Sum_probs=118.6
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCc-----cChHHH
Q 043647 176 TEPAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDD-----FDILRI 250 (1096)
Q Consensus 176 ~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~-----~~~~~~ 250 (1096)
+.+..|.|...-+++.+.+... -..+.|.|+-.+|||+|...+.+......+ .++++++..- .+..+.
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~------G~~~~I~apRq~GKTSll~~l~~~l~~~~~-~~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP------GSYIRIKAPRQMGKTSLLLRLLERLQQQGY-RCVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC------CCEEEEECcccCCHHHHHHHHHHHHHHCCC-EEEEEEeecCCCcccCCHHHH
Confidence 3455678886777777777543 258999999999999999988876544433 3456766542 245555
Q ss_pred HHHHH----HhccCCCC-------CCCcHHHHHHHHHHHh---CCCcEEEEEecCCCCCh--hhHHHhhcccC----CCC
Q 043647 251 TKSIL----ESITFSPN-------SLKDLNQIQVQLREAV---AGKRFLIVLDDVWSKNY--SLWNTLKSPFR----AGA 310 (1096)
Q Consensus 251 ~~~i~----~~l~~~~~-------~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~--~~~~~l~~~l~----~~~ 310 (1096)
++.++ +++..... ...........+.+.+ .+++.+|+||+++..-. ...+++...++ ...
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 55544 44443321 1112223334444432 26899999999964311 11122222111 110
Q ss_pred ----CCcEEEEEcCchhh--hhh-----cCCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCc
Q 043647 311 ----SGSKILVTTCSTDV--ALT-----VGTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLP 379 (1096)
Q Consensus 311 ----~gs~iivTtR~~~v--~~~-----~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 379 (1096)
-..-.+|.....+. ... +.....+.|++++.+|...|..++-... -....++|...++|+|
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~--------~~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF--------SQEQLEQLMDWTGGHP 233 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC--------CHHHHHHHHHHHCCCH
Confidence 01112222221111 111 1223468899999999999988764221 1123788999999999
Q ss_pred hhHHHHHHHhccC
Q 043647 380 LAAETLGGLLRCK 392 (1096)
Q Consensus 380 Lai~~~~~~l~~~ 392 (1096)
.-+..++..+...
T Consensus 234 ~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 234 YLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999998654
No 141
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.55 E-value=0.00064 Score=80.13 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=41.3
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 177 EPAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 177 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
-.+++|-++.++++..|+..........+++.|+|++|+||||+++.++...
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999986543222344689999999999999999998754
No 142
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.54 E-value=0.0008 Score=83.91 Aligned_cols=154 Identities=14% Similarity=0.120 Sum_probs=85.3
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-----ccCcEEEEEecCccChHHHHHH
Q 043647 179 AVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-----MFNLRSWVCVSDDFDILRITKS 253 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~f~~~~wv~~~~~~~~~~~~~~ 253 (1096)
.++||+++++++++.|.... ..-+.++|++|+|||++|+.++...... .-+..+|. + +...++
T Consensus 180 ~~igr~~ei~~~~~~L~r~~-----~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~-- 247 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRT-----KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL-- 247 (821)
T ss_pred CCCCcHHHHHHHHHHHcccc-----cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh--
Confidence 48999999999999996542 2345799999999999998888754211 11344553 1 111111
Q ss_pred HHHhccCCCCCCCcHHHHH-HHHHHHhCCCcEEEEEecCCCCC-------hhhHHHhhcccCCCCCCcEEEEEcCchhhh
Q 043647 254 ILESITFSPNSLKDLNQIQ-VQLREAVAGKRFLIVLDDVWSKN-------YSLWNTLKSPFRAGASGSKILVTTCSTDVA 325 (1096)
Q Consensus 254 i~~~l~~~~~~~~~~~~~~-~~l~~~l~~kr~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 325 (1096)
.+... ..+.++.. ..+.+.-..++.+|++|++..-. ......+..+....+ .-++|-+|...+..
T Consensus 248 -----ag~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~ 320 (821)
T CHL00095 248 -----AGTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYR 320 (821)
T ss_pred -----ccCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHH
Confidence 11111 12233322 22333334578999999995210 011222222221111 23566666555432
Q ss_pred hhc-------CCcceeeCCCCChHhHHHHHHHh
Q 043647 326 LTV-------GTAEYYNLKLLSDDDCWSVFVKH 351 (1096)
Q Consensus 326 ~~~-------~~~~~~~l~~L~~~~~~~lf~~~ 351 (1096)
... .....+.++..+.++...++...
T Consensus 321 ~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 321 KHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 211 22356788888988888887653
No 143
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.53 E-value=0.0011 Score=71.30 Aligned_cols=131 Identities=11% Similarity=0.050 Sum_probs=72.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcE
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKRF 284 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 284 (1096)
-+.++|++|+|||++|+.++...... .....-|+.++. .++ ...+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcccc-----hHHHHHHHHHc---cCc
Confidence 47899999999999997777643222 111113444442 122 22222111 11222222222 235
Q ss_pred EEEEecCCCC---------ChhhHHHhhcccCCCCCCcEEEEEcCchhhhhhc--C------CcceeeCCCCChHhHHHH
Q 043647 285 LIVLDDVWSK---------NYSLWNTLKSPFRAGASGSKILVTTCSTDVALTV--G------TAEYYNLKLLSDDDCWSV 347 (1096)
Q Consensus 285 LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~--~------~~~~~~l~~L~~~~~~~l 347 (1096)
+|+||++..- ..+.++.+...+.....+.+||+++......... . ....+.+++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999632 1123445555554444556777776543322111 1 124688999999999999
Q ss_pred HHHhh
Q 043647 348 FVKHA 352 (1096)
Q Consensus 348 f~~~a 352 (1096)
+...+
T Consensus 204 ~~~~l 208 (284)
T TIGR02880 204 AGLML 208 (284)
T ss_pred HHHHH
Confidence 88776
No 144
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.0017 Score=77.02 Aligned_cols=193 Identities=14% Similarity=0.176 Sum_probs=107.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.+++|.+.-+..+.+++.... -.+.+.++|+.|+||||+|+.+.+..... ..+ ..+.+.-...+.|..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~~ 84 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR----VAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEITE 84 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHhc
Confidence 468999999999999885432 24567899999999999998887653211 100 001111111111111
Q ss_pred hc-------cCC-CCCCCcHHHHHHHHHHH-hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEc-Cchhhhh
Q 043647 257 SI-------TFS-PNSLKDLNQIQVQLREA-VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTT-CSTDVAL 326 (1096)
Q Consensus 257 ~l-------~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~ 326 (1096)
.- ... ....++..++...+... ..+++-++|+|+++.-+....+.+...+..-...+.+|++| ....+..
T Consensus 85 g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~ 164 (576)
T PRK14965 85 GRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPI 164 (576)
T ss_pred CCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhH
Confidence 00 000 00111222222222211 23556689999997766666777777665544455665554 4444432
Q ss_pred hc-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCc-hhHHHH
Q 043647 327 TV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLP-LAAETL 385 (1096)
Q Consensus 327 ~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~ 385 (1096)
.+ .....+++.+++.++....+...+-..+ . .-..+....|++.++|.. .|+..+
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg-i---~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 165 TILSRCQRFDFRRIPLQKIVDRLRYIADQEG-I---SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC-C---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 2235688899999988877766552211 1 122456678899999865 444444
No 145
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.51 E-value=0.0032 Score=74.42 Aligned_cols=192 Identities=14% Similarity=0.139 Sum_probs=108.4
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
.+++|.+..+..+.+++.... -.+.+.++|+.|+||||+|+.+.+........ ...+.+.-...+.+...
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~------~~~pC~~C~~C~~i~~g 85 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP------DGEPCNECEICKAITNG 85 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC------CCCCCCccHHHHHHhcC
Confidence 468999999999999986532 24667889999999999998887642211000 00111111222222211
Q ss_pred ccCC-----CCCCCcHHHHHH---HHHHH-hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEc-Cchhhhhh
Q 043647 258 ITFS-----PNSLKDLNQIQV---QLREA-VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTT-CSTDVALT 327 (1096)
Q Consensus 258 l~~~-----~~~~~~~~~~~~---~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~~ 327 (1096)
.... .......+++.. .+... ..+++-++|+|++..-....+..+...+........+|++| ....+...
T Consensus 86 ~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 86 SLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHH
Confidence 1000 001122232222 22211 24567788999998766667777777665444445555544 33333222
Q ss_pred c-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHH
Q 043647 328 V-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAE 383 (1096)
Q Consensus 328 ~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 383 (1096)
+ .....+.+.+++.++....+...+-..+ . .-..+.+..|++.++|.+..+.
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~eg-i---~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEG-I---EYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHH
Confidence 1 2235688899999998888877663221 1 1123566788889988775433
No 146
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.48 E-value=0.0013 Score=75.43 Aligned_cols=160 Identities=15% Similarity=0.089 Sum_probs=93.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccC-cEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCC
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFN-LRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGK 282 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 282 (1096)
..-+.|+|..|+|||+||+++++.....+.+ .++|++. .++..++...+... ..+. +++..+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~~~ 194 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYRKK 194 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHHhc
Confidence 3458999999999999999999865433333 3556653 34556665555321 1222 33333344
Q ss_pred cEEEEEecCCCCCh-hhH-HHhhcccCC-CCCCcEEEEEcC-chhhh--------hhcCCcceeeCCCCChHhHHHHHHH
Q 043647 283 RFLIVLDDVWSKNY-SLW-NTLKSPFRA-GASGSKILVTTC-STDVA--------LTVGTAEYYNLKLLSDDDCWSVFVK 350 (1096)
Q Consensus 283 r~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~iivTtR-~~~v~--------~~~~~~~~~~l~~L~~~~~~~lf~~ 350 (1096)
.-+|++||+..... ..+ +.+...+.. ...|..||+||. .+.-. ..+.....+.+++.+.+.-.+++.+
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 56899999964210 111 122222211 123457888874 33221 2233445788999999999999988
Q ss_pred hhcCCCCCCCCcchhHHHHHHHHHhCCCchhH
Q 043647 351 HAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAA 382 (1096)
Q Consensus 351 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 382 (1096)
.+-... . .--.++...|++.+.|.--.+
T Consensus 275 ~~~~~~-~---~l~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 275 MLEIEH-G---ELPEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHhcC-C---CCCHHHHHHHHhccccCHHHH
Confidence 874221 1 122466777888877754333
No 147
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.48 E-value=0.00029 Score=66.66 Aligned_cols=97 Identities=23% Similarity=0.140 Sum_probs=52.5
Q ss_pred EEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCC-CcEE
Q 043647 207 IPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAG-KRFL 285 (1096)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~L 285 (1096)
|.|+|++|+||||+|+.+++.... ..+.++.+.-.+. ........+...+.+.-+. ++.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~----~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF----PFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS----EEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSEE
T ss_pred CEEECcCCCCeeHHHHHHHhhccc----ccccccccccccc---------------ccccccccccccccccccccccee
Confidence 579999999999999999986432 1233333221100 1111222333333333233 4899
Q ss_pred EEEecCCCCChhh-----------HHHhhcccCCCC---CCcEEEEEcCch
Q 043647 286 IVLDDVWSKNYSL-----------WNTLKSPFRAGA---SGSKILVTTCST 322 (1096)
Q Consensus 286 lVlDdv~~~~~~~-----------~~~l~~~l~~~~---~gs~iivTtR~~ 322 (1096)
|++||++...... .+.+...+.... .+..||.||...
T Consensus 62 l~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~ 112 (132)
T PF00004_consen 62 LFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP 112 (132)
T ss_dssp EEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG
T ss_pred eeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCCh
Confidence 9999997543222 333444443322 235677777653
No 148
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.45 E-value=0.0034 Score=72.95 Aligned_cols=159 Identities=13% Similarity=0.113 Sum_probs=92.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccccc-CcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCC
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMF-NLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGK 282 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 282 (1096)
..-+.|+|+.|+|||+||+++.+.....+. ..+++++. .++...+...+... ..+ .+.+.++ +
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~----~~~~~~~-~ 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS------EKFTNDFVNALRNN-----TME----EFKEKYR-S 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHcC-----cHH----HHHHHHh-c
Confidence 456899999999999999999986543221 23445543 23344444444211 122 2333333 3
Q ss_pred cEEEEEecCCCCChh--hHHHhhcccCC-CCCCcEEEEEcCchh---------hhhhcCCcceeeCCCCChHhHHHHHHH
Q 043647 283 RFLIVLDDVWSKNYS--LWNTLKSPFRA-GASGSKILVTTCSTD---------VALTVGTAEYYNLKLLSDDDCWSVFVK 350 (1096)
Q Consensus 283 r~LlVlDdv~~~~~~--~~~~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 350 (1096)
.-+|||||++..... ..+.+...+.. ...|..||+|+.... +...+.....+++++.+.++-.+++.+
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 448899999643211 11223222211 123456778776431 223334446789999999999999998
Q ss_pred hhcCCCCCCCCcchhHHHHHHHHHhCCCchhH
Q 043647 351 HAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAA 382 (1096)
Q Consensus 351 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 382 (1096)
.+-..+ . .-..++...|++.+.|..-.+
T Consensus 292 ~~~~~~-~---~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 292 KAEEEG-I---DLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHcC-C---CCCHHHHHHHHcCcCCCHHHH
Confidence 874321 1 223466778888888876543
No 149
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.45 E-value=2.5e-06 Score=96.06 Aligned_cols=125 Identities=24% Similarity=0.203 Sum_probs=89.0
Q ss_pred CCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCCCCcccCCCCCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCC
Q 043647 916 TSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCPSLVSFPEGGLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHK 995 (1096)
Q Consensus 916 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~ 995 (1096)
..|...+.+. +.+..+.+.++-++.|++|+|++ ++++.+. .+..
T Consensus 164 n~L~~a~fsy-N~L~~mD~SLqll~ale~LnLsh-Nk~~~v~----------------------------------~Lr~ 207 (1096)
T KOG1859|consen 164 NKLATASFSY-NRLVLMDESLQLLPALESLNLSH-NKFTKVD----------------------------------NLRR 207 (1096)
T ss_pred hhHhhhhcch-hhHHhHHHHHHHHHHhhhhccch-hhhhhhH----------------------------------HHHh
Confidence 3455555554 56666666777777888888877 3333221 4556
Q ss_pred CCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCCCC---Cccc
Q 043647 996 LTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFPEA---GLPS 1072 (1096)
Q Consensus 996 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~---~l~~ 1072 (1096)
|+.|++|+|++| .+..+|.-. +..+ .|+.|.|++ |.+++| .++.+|.+|+.|++++ |-|..+.+. ..+.
T Consensus 208 l~~LkhLDlsyN-~L~~vp~l~--~~gc-~L~~L~lrn-N~l~tL--~gie~LksL~~LDlsy-Nll~~hseL~pLwsLs 279 (1096)
T KOG1859|consen 208 LPKLKHLDLSYN-CLRHVPQLS--MVGC-KLQLLNLRN-NALTTL--RGIENLKSLYGLDLSY-NLLSEHSELEPLWSLS 279 (1096)
T ss_pred cccccccccccc-hhccccccc--hhhh-hheeeeecc-cHHHhh--hhHHhhhhhhccchhH-hhhhcchhhhHHHHHH
Confidence 788899999998 788887521 2223 399999998 789988 4889999999999999 677666552 2356
Q ss_pred cccceeeccCcc
Q 043647 1073 SLLELYINDYPL 1084 (1096)
Q Consensus 1073 ~L~~L~i~~c~~ 1084 (1096)
+|+.|++.|+|.
T Consensus 280 ~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 280 SLIVLWLEGNPL 291 (1096)
T ss_pred HHHHHhhcCCcc
Confidence 899999999884
No 150
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=1.8e-06 Score=86.97 Aligned_cols=105 Identities=18% Similarity=0.267 Sum_probs=62.5
Q ss_pred cccccccEEEEecCCCcCcc----CCCCCCCccEEEEecccCcc------ccCCCCCCcceEEeccCCCccccCCCCccc
Q 043647 813 ERFACLRQLSIVKCPRLCGR----LPNHLPILEKLMIYECVQLV------VSFSSLPLLCKLEIDRCKGVACRSPADLMS 882 (1096)
Q Consensus 813 ~~~~~L~~L~l~~c~~l~~~----~p~~l~~L~~L~l~~~~~l~------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 882 (1096)
..+..|..|+|+.|.-.... +..--++|+.|++++|.... .....+|+|.+|++++|..+...
T Consensus 257 ~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~------- 329 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND------- 329 (419)
T ss_pred HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch-------
Confidence 34556666666666433211 11123566667776664321 12334788888888888655411
Q ss_pred ccCCCCCCCCCccEEEEccCCCcccchh---hcCCCCCcCeEEEecCC
Q 043647 883 INSDSFKYFRALQQLEILDCPKLESIAE---RFHNNTSLGCIWIWKCE 927 (1096)
Q Consensus 883 ~~~~~l~~l~~L~~L~L~~~~~l~~l~~---~~~~l~~L~~L~l~~c~ 927 (1096)
....+..|+.|++|.++.|-.+ +|. .+...|+|.+|++.+|-
T Consensus 330 -~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 330 -CFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred -HHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 1223557888888888888644 233 24677889999988873
No 151
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.0029 Score=69.29 Aligned_cols=168 Identities=15% Similarity=0.125 Sum_probs=94.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHHHHhc-------cCCC-CCCCcHHHHHH
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSILESI-------TFSP-NSLKDLNQIQV 273 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l-------~~~~-~~~~~~~~~~~ 273 (1096)
-...+.++|+.|+||||+|+.+.+..--. ..+. .+.+.-...+.+...- .... ...-..+++..
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~ 93 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGG-------GACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRE 93 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHH
Confidence 35678899999999999998877643221 0000 0000001111111000 0000 01112344333
Q ss_pred HHHHH----hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchhhhh-hc-CCcceeeCCCCChHhHHHH
Q 043647 274 QLREA----VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTDVAL-TV-GTAEYYNLKLLSDDDCWSV 347 (1096)
Q Consensus 274 ~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~-~~-~~~~~~~l~~L~~~~~~~l 347 (1096)
.+... ..+++-++|+|+++.-+....+.+...+..-..++.+|+||.+.+... .+ .....+.+.+++.+++.+.
T Consensus 94 l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~ 173 (328)
T PRK05707 94 LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQW 173 (328)
T ss_pred HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHH
Confidence 22211 134455567899988777788888777765445677777777654322 11 2235789999999999988
Q ss_pred HHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHH
Q 043647 348 FVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETL 385 (1096)
Q Consensus 348 f~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 385 (1096)
+.... +. ...+.+..++..++|.|..+..+
T Consensus 174 L~~~~-~~-------~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 174 LQQAL-PE-------SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHhc-cc-------CChHHHHHHHHHcCCCHHHHHHH
Confidence 87643 11 11234457789999999765544
No 152
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.36 E-value=1.4e-05 Score=83.07 Aligned_cols=199 Identities=19% Similarity=0.146 Sum_probs=106.2
Q ss_pred hhcCCCCcceEEEecccccc-----cCCCCcCCCCccceeecccc----ccccccccc-------ccCCCCcEEeccCcc
Q 043647 550 NLLPKFTKLRVLSLKKYYIT-----ELPHSIGDLKHLRYINLSET----MIRCLPESI-------CSLCNLQFLILRGCY 613 (1096)
Q Consensus 550 ~~~~~~~~Lr~L~L~~~~~~-----~lp~~i~~l~~Lr~L~L~~~----~i~~lp~~i-------~~L~~L~~L~L~~~~ 613 (1096)
.....+..+..|+|++|.+. .+-..+.+.++||.-+++.- ...++|+.+ -..++|++||||.|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 34556788889999998864 24455667778888888863 122455443 455689999999874
Q ss_pred cCcccC----ccccCCCCCceEEeccccccccCc-ccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCC
Q 043647 614 RLKKLP----SNLRNLINLRHLVVTYVDLIREMP-LGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDY 688 (1096)
Q Consensus 614 ~l~~lp----~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~ 688 (1096)
.-..-+ .-+..++.|+||++.+|. +.... ..+++ .|..|.. -+..++-..|+ .+.+.+=.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~--al~~l~~----------~kk~~~~~~Lr-v~i~~rNr- 168 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGR--ALFELAV----------NKKAASKPKLR-VFICGRNR- 168 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHH--HHHHHHH----------HhccCCCcceE-EEEeeccc-
Confidence 332322 235678899999998887 32111 11111 1111110 00001111111 11110000
Q ss_pred CCCCcchHHHHHHhhccCCCCCCCeEEEeeeCCCCCCc-c--cCCccccceeEEeecCCCCCCC----CC-CCCCcCCcc
Q 043647 689 FDDSRNEALEKNVLDMLQPHRSLKELTVKCYGGTVFPS-W--MGDPLFSNIVLLRLEDCEKCTS----LP-SLGLLGSLK 760 (1096)
Q Consensus 689 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~--~~~~~~~~L~~L~L~~~~~~~~----l~-~l~~l~~L~ 760 (1096)
+. +.........++.++.|+.+.+..|.+..--. . ..-..+++|+.|+|.+|.+... +. .+..+|+|+
T Consensus 169 le----n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 169 LE----NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred cc----cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence 00 00111234456667888888888765432111 0 0112478888888888754321 11 355567788
Q ss_pred eeecccc
Q 043647 761 NLTIKGM 767 (1096)
Q Consensus 761 ~L~L~~~ 767 (1096)
.|++.+|
T Consensus 245 El~l~dc 251 (382)
T KOG1909|consen 245 ELNLGDC 251 (382)
T ss_pred eeccccc
Confidence 8888877
No 153
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.35 E-value=0.0077 Score=65.62 Aligned_cols=193 Identities=17% Similarity=0.160 Sum_probs=109.5
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccc-------------c--ccCcEEEEEecC
Q 043647 179 AVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAV-------------E--MFNLRSWVCVSD 243 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------~--~f~~~~wv~~~~ 243 (1096)
+++|.++.++.+...+.... -.+...++|+.|+||+++|..+.+..-. . |.| ..|+.-..
T Consensus 5 ~iiGq~~~~~~L~~~i~~~r----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~ 79 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNR----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTY 79 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCC----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEeccc
Confidence 58899999999999885432 2478999999999999999766653211 1 222 23332110
Q ss_pred ccChHHHHHHHHHhccCCCC--CCCcHHHHHHHHHHHh-----CCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEE
Q 043647 244 DFDILRITKSILESITFSPN--SLKDLNQIQVQLREAV-----AGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKIL 316 (1096)
Q Consensus 244 ~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 316 (1096)
..+-..+-...+...+.... ..-..+++ +.+.+.+ .+++-++|+|+++..+......+...+..-.. +.+|
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~-~~fI 157 (314)
T PRK07399 80 QHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGN-GTLI 157 (314)
T ss_pred cccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCC-CeEE
Confidence 00000000111111111101 11122332 2333333 46677999999977766677777776654333 3555
Q ss_pred EEcCch-hhhhhc-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHH
Q 043647 317 VTTCST-DVALTV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETL 385 (1096)
Q Consensus 317 vTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 385 (1096)
++|.+. .+...+ .....+.+.+++.++..+.+.+..... ........++..++|.|..+..+
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~-------~~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE-------ILNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc-------cchhHHHHHHHHcCCCHHHHHHH
Confidence 554443 333222 233679999999999999988764211 11111357899999999665543
No 154
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.34 E-value=1e-05 Score=72.09 Aligned_cols=98 Identities=21% Similarity=0.290 Sum_probs=62.4
Q ss_pred cceEEEecccccccCCC---CcCCCCccceeeccccccccccccccc-CCCCcEEeccCcccCcccCccccCCCCCceEE
Q 043647 557 KLRVLSLKKYYITELPH---SIGDLKHLRYINLSETMIRCLPESICS-LCNLQFLILRGCYRLKKLPSNLRNLINLRHLV 632 (1096)
Q Consensus 557 ~Lr~L~L~~~~~~~lp~---~i~~l~~Lr~L~L~~~~i~~lp~~i~~-L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 632 (1096)
.+-.+||+.|.+..+++ .+....+|...+|++|.++.+|+.+.. ++..++|++++ +.+.++|.++..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcc
Confidence 34456666666554443 334556666677777777777766643 34677777777 36777777777777777777
Q ss_pred eccccccccCcccCCCCCCCCcCC
Q 043647 633 VTYVDLIREMPLGIKELKCLQMLS 656 (1096)
Q Consensus 633 l~~~~~~~~~p~~i~~L~~L~~L~ 656 (1096)
++.|. +...|..|..|.+|..|.
T Consensus 107 l~~N~-l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 107 LRFNP-LNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred cccCc-cccchHHHHHHHhHHHhc
Confidence 77766 555566665566555553
No 155
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.30 E-value=0.0023 Score=62.82 Aligned_cols=100 Identities=17% Similarity=0.247 Sum_probs=63.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.++||-++.++++.-...+ ++.+-+.|.||+|+||||-+..+++..-.. +-+.+.-.++|++
T Consensus 27 ~dIVGNe~tv~rl~via~~-----gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde------------ 89 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE-----GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE------------ 89 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc-----CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc------------
Confidence 4689999998888766633 346789999999999999888777654322 2222222222222
Q ss_pred hccCCCCCCCcHHHHHHHHHHHh-------CCCcEEEEEecCCCCChhhHHHhh
Q 043647 257 SITFSPNSLKDLNQIQVQLREAV-------AGKRFLIVLDDVWSKNYSLWNTLK 303 (1096)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~l~~~l-------~~kr~LlVlDdv~~~~~~~~~~l~ 303 (1096)
...+.+...++.+- .++.-.+|||.+++......+.+.
T Consensus 90 ---------RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlR 134 (333)
T KOG0991|consen 90 ---------RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALR 134 (333)
T ss_pred ---------cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHH
Confidence 23444445554433 356678999999876544444443
No 156
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.30 E-value=0.0033 Score=73.15 Aligned_cols=155 Identities=12% Similarity=0.072 Sum_probs=90.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccc-cCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEM-FNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKR 283 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 283 (1096)
..+.|+|..|+|||.|++++++.....+ -..+++++ ..++..++...+.. ...+ .+++.++. -
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~-----~~~~----~f~~~y~~-~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRD-----GKGD----SFRRRYRE-M 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHh-----ccHH----HHHHHhhc-C
Confidence 4589999999999999999998643221 12345554 33444444444321 1112 23333333 3
Q ss_pred EEEEEecCCCCCh-hhHHH-hhcccCC-CCCCcEEEEEcCch---------hhhhhcCCcceeeCCCCChHhHHHHHHHh
Q 043647 284 FLIVLDDVWSKNY-SLWNT-LKSPFRA-GASGSKILVTTCST---------DVALTVGTAEYYNLKLLSDDDCWSVFVKH 351 (1096)
Q Consensus 284 ~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 351 (1096)
=+|||||+..... ..|+. +...+.. ...|..|||||+.. .+...+...-.+.++..+.+.-.+++.++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 4788999965422 22222 2222211 12355688888752 23334455678999999999999999988
Q ss_pred hcCCCCCCCCcchhHHHHHHHHHhCCCc
Q 043647 352 AFEKRDVGLHRHMGSIRKKVVQKCRGLP 379 (1096)
Q Consensus 352 a~~~~~~~~~~~~~~~~~~i~~~~~g~P 379 (1096)
+-... . .--.++..-|++.+.+..
T Consensus 459 a~~r~-l---~l~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 459 AVQEQ-L---NAPPEVLEFIASRISRNI 482 (617)
T ss_pred HHhcC-C---CCCHHHHHHHHHhccCCH
Confidence 74322 1 222466667777766554
No 157
>PRK10536 hypothetical protein; Provisional
Probab=97.29 E-value=0.0037 Score=64.29 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=74.6
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEE----ecC-----ccChH
Q 043647 179 AVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVC----VSD-----DFDIL 248 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~----~~~-----~~~~~ 248 (1096)
.+.+|......++.++.+ ..+|.+.|++|+|||+||.++..+.-.. .|+.++-+. +++ +-+..
T Consensus 56 ~i~p~n~~Q~~~l~al~~-------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~ 128 (262)
T PRK10536 56 PILARNEAQAHYLKAIES-------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIA 128 (262)
T ss_pred cccCCCHHHHHHHHHHhc-------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHH
Confidence 467888889999988843 2489999999999999998877753222 344333221 111 11111
Q ss_pred ----HHHHHHHHhccCCCCCCCcHHHHHHHH-----------HHHhCCCcE---EEEEecCCCCChhhHHHhhcccCCCC
Q 043647 249 ----RITKSILESITFSPNSLKDLNQIQVQL-----------REAVAGKRF---LIVLDDVWSKNYSLWNTLKSPFRAGA 310 (1096)
Q Consensus 249 ----~~~~~i~~~l~~~~~~~~~~~~~~~~l-----------~~~l~~kr~---LlVlDdv~~~~~~~~~~l~~~l~~~~ 310 (1096)
-.++-+...+..-- ..+.+...+ -.+++|+.+ +||+|.+.+.+......+.. ..+
T Consensus 129 eK~~p~~~pi~D~L~~~~----~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~lt---R~g 201 (262)
T PRK10536 129 EKFAPYFRPVYDVLVRRL----GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLT---RLG 201 (262)
T ss_pred HHHHHHHHHHHHHHHHHh----ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHh---hcC
Confidence 11122222221100 001111111 235667654 99999998876655555544 345
Q ss_pred CCcEEEEEcCchhh
Q 043647 311 SGSKILVTTCSTDV 324 (1096)
Q Consensus 311 ~gs~iivTtR~~~v 324 (1096)
.+|++|+|--..++
T Consensus 202 ~~sk~v~~GD~~Qi 215 (262)
T PRK10536 202 ENVTVIVNGDITQC 215 (262)
T ss_pred CCCEEEEeCChhhc
Confidence 78999998654433
No 158
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.28 E-value=0.0023 Score=77.67 Aligned_cols=155 Identities=15% Similarity=0.162 Sum_probs=86.5
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-----ccCcEEEEEecCccChHHHHHH
Q 043647 179 AVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-----MFNLRSWVCVSDDFDILRITKS 253 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~f~~~~wv~~~~~~~~~~~~~~ 253 (1096)
.++||++++.++++.|.... ..-+.++|++|+|||++|+.++...... ..++.+|.. +.. .
T Consensus 187 ~liGR~~ei~~~i~iL~r~~-----~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~----~ 252 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR-----KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG----S 252 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC-----CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH----H
Confidence 48999999999999886532 2345689999999999999988643211 124455521 111 1
Q ss_pred HHHhccCCCCCCCcHHHHHHHHHHHh-CCCcEEEEEecCCCC--------ChhhHHHhhcccCCCCCCcEEEEEcCchhh
Q 043647 254 ILESITFSPNSLKDLNQIQVQLREAV-AGKRFLIVLDDVWSK--------NYSLWNTLKSPFRAGASGSKILVTTCSTDV 324 (1096)
Q Consensus 254 i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 324 (1096)
++. +.. -..+.+.....+-+.+ +.++.+|++|++..- ...+...+..++...+ .-+||-+|...+.
T Consensus 253 lla---G~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E~ 327 (758)
T PRK11034 253 LLA---GTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQEF 327 (758)
T ss_pred Hhc---ccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHHH
Confidence 110 110 0112222222222222 356789999999631 1122223333333221 2345555544432
Q ss_pred hhhc-------CCcceeeCCCCChHhHHHHHHHhh
Q 043647 325 ALTV-------GTAEYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 325 ~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 352 (1096)
...+ .....+.++..+.++..+++....
T Consensus 328 ~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 2111 122578999999999999988654
No 159
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.25 E-value=0.0016 Score=62.44 Aligned_cols=88 Identities=19% Similarity=0.036 Sum_probs=47.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCC-c
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGK-R 283 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-r 283 (1096)
..+.|+|++|+||||+|+.++....... ..++++..+........... ...................+.+..+.. .
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999988643322 23555554443322222111 011111111112222223334444333 4
Q ss_pred EEEEEecCCCCC
Q 043647 284 FLIVLDDVWSKN 295 (1096)
Q Consensus 284 ~LlVlDdv~~~~ 295 (1096)
.++++|+++...
T Consensus 80 ~viiiDei~~~~ 91 (148)
T smart00382 80 DVLILDEITSLL 91 (148)
T ss_pred CEEEEECCcccC
Confidence 999999997653
No 160
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.25 E-value=0.0041 Score=70.34 Aligned_cols=119 Identities=20% Similarity=0.167 Sum_probs=76.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEE
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKRFL 285 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~L 285 (1096)
++.|.|+-++||||+++.+....... .+++...+......- ..+....+.+.-..++..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~----~iy~~~~d~~~~~~~-----------------l~d~~~~~~~~~~~~~~y 97 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE----IIYINFDDLRLDRIE-----------------LLDLLRAYIELKEREKSY 97 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc----eEEEEecchhcchhh-----------------HHHHHHHHHHhhccCCce
Confidence 99999999999999996666543221 444443222111100 011111122211227889
Q ss_pred EEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchhhhhh------cCCcceeeCCCCChHhHHHHH
Q 043647 286 IVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTDVALT------VGTAEYYNLKLLSDDDCWSVF 348 (1096)
Q Consensus 286 lVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~------~~~~~~~~l~~L~~~~~~~lf 348 (1096)
++||.|... ..|+.....+.+.++. +|++|+-+...... .+....+.+-||+..|...+.
T Consensus 98 ifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 98 IFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred EEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 999999776 7899988888877666 88888876654322 133457899999999987754
No 161
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.24 E-value=0.0012 Score=74.75 Aligned_cols=156 Identities=13% Similarity=0.121 Sum_probs=86.9
Q ss_pred CccccchHHHHHHHHHHhcCC--------CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDE--------PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILR 249 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~--------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~ 249 (1096)
.++.|.+..++++.+.+.-.- .+-...+-+.++|++|+|||++|+++++.... .| +.+... +
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~-~f-----i~V~~s----e 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA-TF-----LRVVGS----E 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC-CE-----EEEecc----h
Confidence 356789988888887663210 01123456889999999999999999985432 22 222111 1
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCC-----------hh---hHHHhhcccCC--CCCCc
Q 043647 250 ITKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKN-----------YS---LWNTLKSPFRA--GASGS 313 (1096)
Q Consensus 250 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~---~~~~l~~~l~~--~~~gs 313 (1096)
+.. ...+ .....+...+.....+.+.+|+||+++... .. ....+...+.. ...+.
T Consensus 253 L~~----k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V 323 (438)
T PTZ00361 253 LIQ----KYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDV 323 (438)
T ss_pred hhh----hhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCe
Confidence 111 1100 111122222333334678899999974310 00 01112222211 12356
Q ss_pred EEEEEcCchhhhhhc-----CCcceeeCCCCChHhHHHHHHHhh
Q 043647 314 KILVTTCSTDVALTV-----GTAEYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 314 ~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a 352 (1096)
+||.||...+..... .....+.++..+.++..++|..+.
T Consensus 324 ~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 324 KVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred EEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 788888765443321 123568899999999999998776
No 162
>PRK08118 topology modulation protein; Reviewed
Probab=97.24 E-value=0.00016 Score=70.90 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccc--ccCcEEE
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDKAVE--MFNLRSW 238 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~~--~f~~~~w 238 (1096)
.|.|+|++|+||||+|+.+++..... +||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999876554 7787776
No 163
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.22 E-value=0.0049 Score=69.31 Aligned_cols=178 Identities=16% Similarity=0.128 Sum_probs=94.9
Q ss_pred CccccchHHHHHHHHHHhcC----C----CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHH
Q 043647 178 PAVFGRDEDKAKILEMVLRD----E----PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILR 249 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~----~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~ 249 (1096)
.++.|.+..+++|.+.+... + .+-...+-|.++|++|+|||++|+++++.... .| +.+.. ..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~-~f---i~i~~------s~ 214 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA-TF---IRVVG------SE 214 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC-CE---EEEeh------HH
Confidence 35788888888877755311 0 11134567899999999999999999985432 11 12211 11
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCC-----------hh---hHHHhhcccCC--CCCCc
Q 043647 250 ITKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKN-----------YS---LWNTLKSPFRA--GASGS 313 (1096)
Q Consensus 250 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~---~~~~l~~~l~~--~~~gs 313 (1096)
+... ..+ .....+...+.......+.+|++|+++... .. .+..+...+.. ...+.
T Consensus 215 l~~k----~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v 285 (398)
T PTZ00454 215 FVQK----YLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV 285 (398)
T ss_pred HHHH----hcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCE
Confidence 1111 110 111122223333335678999999985310 00 11222222221 12356
Q ss_pred EEEEEcCchhhhhh--cC---CcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCc
Q 043647 314 KILVTTCSTDVALT--VG---TAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLP 379 (1096)
Q Consensus 314 ~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 379 (1096)
.||.||...+.... .. -...+.++..+.++..++|..+.-. .......++ .++++...|+-
T Consensus 286 ~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~-~~l~~dvd~----~~la~~t~g~s 351 (398)
T PTZ00454 286 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK-MNLSEEVDL----EDFVSRPEKIS 351 (398)
T ss_pred EEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc-CCCCcccCH----HHHHHHcCCCC
Confidence 78888876543322 11 2346888888888888888766532 111112222 34566666653
No 164
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.21 E-value=0.0041 Score=77.88 Aligned_cols=155 Identities=15% Similarity=0.162 Sum_probs=83.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-----ccCcEEEEEecCccChHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-----MFNLRSWVCVSDDFDILRITK 252 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~f~~~~wv~~~~~~~~~~~~~ 252 (1096)
+.++||++++.+++..|.... ...+.++|++|+|||++|+.+....... -.+..+|.- ++..+.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~-----~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~- 241 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT-----KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALI- 241 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC-----CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHh-
Confidence 358999999999999995532 3456689999999999998887753211 112333321 111111
Q ss_pred HHHHhccCCCCCCCcHHH-HHHHHHHHhC-CCcEEEEEecCCCCC-------hhhHHHhhcccCCCCCC-cEEEEEcCch
Q 043647 253 SILESITFSPNSLKDLNQ-IQVQLREAVA-GKRFLIVLDDVWSKN-------YSLWNTLKSPFRAGASG-SKILVTTCST 322 (1096)
Q Consensus 253 ~i~~~l~~~~~~~~~~~~-~~~~l~~~l~-~kr~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~g-s~iivTtR~~ 322 (1096)
. +... ..+.+. +...+.+.-+ +++.+|++|++..-. ..+...+..+.. ..| -++|-+|...
T Consensus 242 ---a---~~~~-~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt~~ 312 (852)
T TIGR03346 242 ---A---GAKY-RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATTLD 312 (852)
T ss_pred ---h---cchh-hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCcHH
Confidence 0 0000 012222 2222332222 468999999996321 011112222222 223 3455555544
Q ss_pred hhhhhc-------CCcceeeCCCCChHhHHHHHHHhh
Q 043647 323 DVALTV-------GTAEYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 323 ~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 352 (1096)
+....+ .....+.++..+.++..+++....
T Consensus 313 e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 313 EYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 332111 122467888899999999887654
No 165
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.19 E-value=0.0048 Score=70.65 Aligned_cols=154 Identities=14% Similarity=0.122 Sum_probs=86.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKR 283 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 283 (1096)
..-+.|+|+.|+|||+||+++.+..... ...+++++ ...+...+...+... .. ..+++..+ ..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~-~~~v~yi~------~~~f~~~~~~~l~~~-----~~----~~f~~~~~-~~ 203 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES-GGKILYVR------SELFTEHLVSAIRSG-----EM----QRFRQFYR-NV 203 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEee------HHHHHHHHHHHHhcc-----hH----HHHHHHcc-cC
Confidence 3568899999999999999999864322 12344554 234444555444321 11 22344443 34
Q ss_pred EEEEEecCCCCChhhH--HHhhcccCC-CCCCcEEEEEcCch---------hhhhhcCCcceeeCCCCChHhHHHHHHHh
Q 043647 284 FLIVLDDVWSKNYSLW--NTLKSPFRA-GASGSKILVTTCST---------DVALTVGTAEYYNLKLLSDDDCWSVFVKH 351 (1096)
Q Consensus 284 ~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 351 (1096)
-++++||+.......| +.+...+.. ...|..||+||... .+...+.....+.+++++.++-.+++.++
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 4788899865321111 222222211 11355788887542 22233344567889999999999999887
Q ss_pred hcCCCCCCCCcchhHHHHHHHHHhCCC
Q 043647 352 AFEKRDVGLHRHMGSIRKKVVQKCRGL 378 (1096)
Q Consensus 352 a~~~~~~~~~~~~~~~~~~i~~~~~g~ 378 (1096)
+-..+ . .--.++..-|+..+.|.
T Consensus 284 ~~~~~-~---~l~~evl~~la~~~~~d 306 (445)
T PRK12422 284 AEALS-I---RIEETALDFLIEALSSN 306 (445)
T ss_pred HHHcC-C---CCCHHHHHHHHHhcCCC
Confidence 73321 1 11234555566665543
No 166
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.19 E-value=0.014 Score=64.62 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=81.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCc-EEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCC
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNL-RSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAG 281 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 281 (1096)
....+.|||..|.|||.|++++.+.......+. ++++ +.......++..+.. .-....++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~------~se~f~~~~v~a~~~---------~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL------TSEDFTNDFVKALRD---------NEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec------cHHHHHHHHHHHHHh---------hhHHHHHHhh--
Confidence 467899999999999999999998654433332 3333 234444555544432 1122344444
Q ss_pred CcEEEEEecCCCCC-----hhhHHHhhcccCCCCCCcEEEEEcCc---------hhhhhhcCCcceeeCCCCChHhHHHH
Q 043647 282 KRFLIVLDDVWSKN-----YSLWNTLKSPFRAGASGSKILVTTCS---------TDVALTVGTAEYYNLKLLSDDDCWSV 347 (1096)
Q Consensus 282 kr~LlVlDdv~~~~-----~~~~~~l~~~l~~~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~l 347 (1096)
.-=++++||++--. +++.-.+...+.. .|-.||+|++. +.+...+...-.+.+.+.+.+....+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 33488899996521 1122222233332 23489999863 33444556667899999999999999
Q ss_pred HHHhhc
Q 043647 348 FVKHAF 353 (1096)
Q Consensus 348 f~~~a~ 353 (1096)
+.+++.
T Consensus 253 L~kka~ 258 (408)
T COG0593 253 LRKKAE 258 (408)
T ss_pred HHHHHH
Confidence 988774
No 167
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.15 E-value=5.4e-05 Score=87.10 Aligned_cols=100 Identities=29% Similarity=0.422 Sum_probs=80.5
Q ss_pred CCCCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceEE
Q 043647 553 PKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLV 632 (1096)
Q Consensus 553 ~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 632 (1096)
..+..+..+++..+.+..+-..++.+.+|.+|++.+|.|..+...+..+.+|++|++++| .|..+.. +..++.|+.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~ 146 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELN 146 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc-hhhccchhhhe
Confidence 345667777788888888667789999999999999999998777899999999999995 7888764 88888999999
Q ss_pred eccccccccCcccCCCCCCCCcCC
Q 043647 633 VTYVDLIREMPLGIKELKCLQMLS 656 (1096)
Q Consensus 633 l~~~~~~~~~p~~i~~L~~L~~L~ 656 (1096)
+.+|. +..+ .++..++.|+.+.
T Consensus 147 l~~N~-i~~~-~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 147 LSGNL-ISDI-SGLESLKSLKLLD 168 (414)
T ss_pred eccCc-chhc-cCCccchhhhccc
Confidence 99998 5544 3455566666654
No 168
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.14 E-value=0.0081 Score=58.65 Aligned_cols=129 Identities=17% Similarity=0.131 Sum_probs=72.4
Q ss_pred cchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHHHHhccC
Q 043647 182 GRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSILESITF 260 (1096)
Q Consensus 182 gr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 260 (1096)
|-++..+.+.+.+..+ .-...+.++|+.|+||+++|..+.+..-.. .... .+ ..-...+.+...-..
T Consensus 1 gq~~~~~~L~~~~~~~----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~----~c----~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNED----PC----GECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCT----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT----------SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcC----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC----CC----CCCHHHHHHHhccCc
Confidence 4556667777777443 234578999999999999998777643222 1110 00 001111111111000
Q ss_pred ------CCCC--CCcHHHHHHHHHHHh-----CCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchh
Q 043647 261 ------SPNS--LKDLNQIQVQLREAV-----AGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTD 323 (1096)
Q Consensus 261 ------~~~~--~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 323 (1096)
.... .-..+++. .+.+.+ .+++=++|+||++....+.+..+...+-.-...+.+|++|.+.+
T Consensus 69 d~~~~~~~~~~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 69 DFIIIKPDKKKKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp TEEEEETTTSSSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred ceEEEecccccchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 0000 12334433 333333 34577899999998888888888888877777889988888765
No 169
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.13 E-value=0.02 Score=57.94 Aligned_cols=180 Identities=17% Similarity=0.191 Sum_probs=104.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecC-ccChHHHHHHHHHhccCCCCCC--CcHHHHHHHHHHHh-
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSD-DFDILRITKSILESITFSPNSL--KDLNQIQVQLREAV- 279 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~l- 279 (1096)
.+++.++|.-|.|||.++++....... +.++-|.+.. ..+...+...++.++....... .-..+..+.+.+..
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~~---d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~ 127 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLNE---DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVK 127 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcCC---CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHH
Confidence 469999999999999999955442211 2222244443 4567788888888887632211 11233333444333
Q ss_pred CCCc-EEEEEecCCCCChhhHHHhhcccCCCCCCc---EEEEEcCch-------hhhhhcC-Ccce-eeCCCCChHhHHH
Q 043647 280 AGKR-FLIVLDDVWSKNYSLWNTLKSPFRAGASGS---KILVTTCST-------DVALTVG-TAEY-YNLKLLSDDDCWS 346 (1096)
Q Consensus 280 ~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs---~iivTtR~~-------~v~~~~~-~~~~-~~l~~L~~~~~~~ 346 (1096)
+++| ..+++|+.........+.+.........++ +|+..-..+ .+....+ ...+ |++.|++.++...
T Consensus 128 ~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~ 207 (269)
T COG3267 128 KGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGL 207 (269)
T ss_pred hCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHH
Confidence 5777 999999997765555555443222111111 233222110 0111111 1123 8999999998888
Q ss_pred HHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHHH
Q 043647 347 VFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGG 387 (1096)
Q Consensus 347 lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 387 (1096)
++..+..+... ..+--..+....|.....|.|.+|..++.
T Consensus 208 yl~~~Le~a~~-~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 208 YLRHRLEGAGL-PEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHhccCC-CcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 87777644321 12222345667899999999999987764
No 170
>PRK08116 hypothetical protein; Validated
Probab=97.12 E-value=0.0016 Score=69.33 Aligned_cols=104 Identities=20% Similarity=0.217 Sum_probs=59.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcE
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKRF 284 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 284 (1096)
.-+.++|..|+|||.||.++++....+ ...+++++ ..+++..+........ ..+.. .+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~-~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~----~~~~~l~~~d- 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK-GVPVIFVN------FPQLLNRIKSTYKSSG--KEDEN----EIIRSLVNAD- 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEE------HHHHHHHHHHHHhccc--cccHH----HHHHHhcCCC-
Confidence 358899999999999999999875433 23355554 3445555554433211 11111 2333344444
Q ss_pred EEEEecCCCCChhhHHH--hhcccCC-CCCCcEEEEEcCch
Q 043647 285 LIVLDDVWSKNYSLWNT--LKSPFRA-GASGSKILVTTCST 322 (1096)
Q Consensus 285 LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtR~~ 322 (1096)
||||||+......+|.. +...+.. ...|..+||||...
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999996543344543 3222221 13456799998643
No 171
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.12 E-value=0.00031 Score=84.24 Aligned_cols=108 Identities=20% Similarity=0.189 Sum_probs=81.7
Q ss_pred ccCcCceeecccchhhhhhhhccchhhhhhhhcCCCCcceEEEecccccccCCCCcCCCCccceeecccccccccc--cc
Q 043647 520 HEVEHLRTFLPVLSYEIRLLTRYITDVVLSNLLPKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLP--ES 597 (1096)
Q Consensus 520 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp--~~ 597 (1096)
..++.||+|.+.+ . ......+...+.++++|+.||+|+++++.+ ..+++|++|+.|.+++-.+..-+ ..
T Consensus 145 ~~LPsL~sL~i~~-~-------~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~ 215 (699)
T KOG3665|consen 145 TMLPSLRSLVISG-R-------QFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLID 215 (699)
T ss_pred hhCcccceEEecC-c-------eecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHH
Confidence 4578888887765 1 122333566788999999999999999988 78899999999999987776433 46
Q ss_pred cccCCCCcEEeccCcccCcccCc-------cccCCCCCceEEecccc
Q 043647 598 ICSLCNLQFLILRGCYRLKKLPS-------NLRNLINLRHLVVTYVD 637 (1096)
Q Consensus 598 i~~L~~L~~L~L~~~~~l~~lp~-------~i~~l~~L~~L~l~~~~ 637 (1096)
+.+|++|++||+|..... .-+. .-..|++||.||.+++.
T Consensus 216 LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcc
Confidence 788999999999985332 2221 12348999999999875
No 172
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.09 E-value=0.0078 Score=75.09 Aligned_cols=155 Identities=13% Similarity=0.121 Sum_probs=82.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-----ccCcEEE-EEecCccChHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-----MFNLRSW-VCVSDDFDILRIT 251 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~f~~~~w-v~~~~~~~~~~~~ 251 (1096)
+.++||+.++.+++..|.... ..-+.++|.+|+|||++|+.+....... -.+..+| +.++. +.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~-----~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~ 246 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT-----KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV 246 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC-----cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hh
Confidence 358999999999999996542 3456799999999999998888753211 0122222 22211 10
Q ss_pred HHHHHhccCCCCCCCcHHH-HHHHHHHHh-CCCcEEEEEecCCCCCh-------hhHHHhhcccCCCCCCcEEEEEcCch
Q 043647 252 KSILESITFSPNSLKDLNQ-IQVQLREAV-AGKRFLIVLDDVWSKNY-------SLWNTLKSPFRAGASGSKILVTTCST 322 (1096)
Q Consensus 252 ~~i~~~l~~~~~~~~~~~~-~~~~l~~~l-~~kr~LlVlDdv~~~~~-------~~~~~l~~~l~~~~~gs~iivTtR~~ 322 (1096)
. +. ....+.+. +...+.+.- .+++.+|++|++..-.. .+-..+..+....+ .-++|-+|...
T Consensus 247 a-------g~-~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt~~ 317 (857)
T PRK10865 247 A-------GA-KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTLD 317 (857)
T ss_pred h-------cc-chhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCCCH
Confidence 0 00 00111222 222232222 35789999999964310 01122222222211 23555555544
Q ss_pred hhhhhc-------CCcceeeCCCCChHhHHHHHHHhh
Q 043647 323 DVALTV-------GTAEYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 323 ~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 352 (1096)
+....+ .....+.+...+.++..+++....
T Consensus 318 e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 318 EYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 432111 112356677778888888886544
No 173
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.07 E-value=3.1e-05 Score=92.11 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=23.2
Q ss_pred CCCccEEEEccCCCccc--chhhcCCCCCcCeEEEecCCCc
Q 043647 891 FRALQQLEILDCPKLES--IAERFHNNTSLGCIWIWKCENL 929 (1096)
Q Consensus 891 l~~L~~L~L~~~~~l~~--l~~~~~~l~~L~~L~l~~c~~l 929 (1096)
+++|+.|.+.+|..++. +......+++|++|++++|..+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 45667776666665432 2333456666777777776655
No 174
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.06 E-value=0.031 Score=68.69 Aligned_cols=165 Identities=17% Similarity=0.200 Sum_probs=86.8
Q ss_pred CCccccchHHHHHHHHHHhcCCC-CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHH
Q 043647 177 EPAVFGRDEDKAKILEMVLRDEP-TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSIL 255 (1096)
Q Consensus 177 ~~~~vgr~~~~~~l~~~L~~~~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 255 (1096)
+.+.+|.++-+++|+++|..... ......++.++|++|+||||+|+.++..... .| +-+.++...+..++...--
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~-~~---~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGR-KY---VRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCC-CE---EEEEcCCCCCHHHhccchh
Confidence 45689999999999988863211 1123468999999999999999999864322 12 1133333323322211110
Q ss_pred HhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhh----HHHhhcccCCC---------------CCCcEEE
Q 043647 256 ESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSL----WNTLKSPFRAG---------------ASGSKIL 316 (1096)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~~---------------~~gs~ii 316 (1096)
...+ .....+...+...- ...-+++||.++...... .+.+...+.+. -...-+|
T Consensus 397 ~~~g------~~~G~~~~~l~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 397 TYIG------SMPGKLIQKMAKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred ccCC------CCCcHHHHHHHhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 0011 01112222333222 234478899996542211 22333322211 1233344
Q ss_pred EEcCchhhhhhc-CCcceeeCCCCChHhHHHHHHHhh
Q 043647 317 VTTCSTDVALTV-GTAEYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 317 vTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a 352 (1096)
.|+....+...+ +...++.+.+++.+|-.++..++.
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 455433222111 223578899999999888887766
No 175
>CHL00176 ftsH cell division protein; Validated
Probab=97.06 E-value=0.0037 Score=74.47 Aligned_cols=177 Identities=15% Similarity=0.230 Sum_probs=95.8
Q ss_pred CccccchHHHHHHH---HHHhcCCC----CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHH
Q 043647 178 PAVFGRDEDKAKIL---EMVLRDEP----TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~---~~L~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 250 (1096)
.+++|.++..+++. +++..... +....+-|.++|++|+|||++|++++...... |+.++.. ++
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p------~i~is~s----~f 252 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP------FFSISGS----EF 252 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC------eeeccHH----HH
Confidence 45778776555544 44432221 12234568999999999999999998754221 2322211 11
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCC----------hhh----HHHhhcccCC--CCCCcE
Q 043647 251 TKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKN----------YSL----WNTLKSPFRA--GASGSK 314 (1096)
Q Consensus 251 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~----~~~l~~~l~~--~~~gs~ 314 (1096)
..... + .....+...+....++.+++|++||++.-. ... +..+...+.. ...+-.
T Consensus 253 ~~~~~---g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~Vi 323 (638)
T CHL00176 253 VEMFV---G------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVI 323 (638)
T ss_pred HHHhh---h------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCee
Confidence 11000 0 111223334455556788999999995321 011 2223222221 223556
Q ss_pred EEEEcCchhhhhh-c-C---CcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCC
Q 043647 315 ILVTTCSTDVALT-V-G---TAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGL 378 (1096)
Q Consensus 315 iivTtR~~~v~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 378 (1096)
||.||...+.... + . -...+.++..+.++-.++++.++-. ... ........+++.+.|.
T Consensus 324 VIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~-~~~----~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 324 VIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN-KKL----SPDVSLELIARRTPGF 387 (638)
T ss_pred EEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh-ccc----chhHHHHHHHhcCCCC
Confidence 7777766543221 1 1 2356788888999999999887732 111 1122345677777773
No 176
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.05 E-value=0.007 Score=61.84 Aligned_cols=174 Identities=14% Similarity=0.164 Sum_probs=95.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
.+|+|.++-++++.-++.........+-.+.++|++|.||||||..++++..+. +-++-+....-..-+..++..
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn-----~k~tsGp~leK~gDlaaiLt~ 100 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN-----LKITSGPALEKPGDLAAILTN 100 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC-----eEecccccccChhhHHHHHhc
Confidence 479999988888776664433334457789999999999999999999875443 111111111111111122222
Q ss_pred ccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCC--------CCCCc-----------EEEEE
Q 043647 258 ITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRA--------GASGS-----------KILVT 318 (1096)
Q Consensus 258 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~--------~~~gs-----------~iivT 318 (1096)
|+.. =.+.+|.+.......-+-+..+..+ .++++ -|=-|
T Consensus 101 ---------------------Le~~-DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGAT 158 (332)
T COG2255 101 ---------------------LEEG-DVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGAT 158 (332)
T ss_pred ---------------------CCcC-CeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeec
Confidence 2222 2344565543321111111111110 12222 33457
Q ss_pred cCchhhhhhcCC--cceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhH
Q 043647 319 TCSTDVALTVGT--AEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAA 382 (1096)
Q Consensus 319 tR~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 382 (1096)
||.-.+...+.. .-+.+++-.+.+|-.+...+.|..-+ -+-..+.+.+|+++..|-|--.
T Consensus 159 Tr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~----i~i~~~~a~eIA~rSRGTPRIA 220 (332)
T COG2255 159 TRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG----IEIDEEAALEIARRSRGTPRIA 220 (332)
T ss_pred cccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC----CCCChHHHHHHHHhccCCcHHH
Confidence 875544333211 23567888899999999888772211 1223467889999999999433
No 177
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.03 E-value=0.016 Score=59.02 Aligned_cols=105 Identities=22% Similarity=0.325 Sum_probs=65.2
Q ss_pred CCCccccchHHHHHHHHHH---hcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHH
Q 043647 176 TEPAVFGRDEDKAKILEMV---LRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITK 252 (1096)
Q Consensus 176 ~~~~~vgr~~~~~~l~~~L---~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 252 (1096)
.-++++|.+.+++.|++=. +.. ....-+.+||..|.|||++++++.+....+. .--|.+
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G----~pannvLL~G~rGtGKSSlVkall~~y~~~G---LRlIev----------- 86 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQG----LPANNVLLWGARGTGKSSLVKALLNEYADQG---LRLIEV----------- 86 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHcC----CCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ceEEEE-----------
Confidence 3457999999999887522 222 2245678899999999999999998543321 111222
Q ss_pred HHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCC-ChhhHHHhhcccCC
Q 043647 253 SILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSK-NYSLWNTLKSPFRA 308 (1096)
Q Consensus 253 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~ 308 (1096)
...+..++..+...++. +..||+|++||..=+ ....+..++..+..
T Consensus 87 --------~k~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeG 133 (249)
T PF05673_consen 87 --------SKEDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEG 133 (249)
T ss_pred --------CHHHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcC
Confidence 22223444555555553 467999999998432 22446666665543
No 178
>PRK07261 topology modulation protein; Provisional
Probab=97.02 E-value=0.0015 Score=64.57 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=41.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccc--ccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDKAVE--MFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKR 283 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~~--~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 283 (1096)
.|.|+|++|+||||||+.+....... +.|...|-.. ....+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN---------------------WQERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc---------------------cccCCHHHHHHHHHHHHhCCC
Confidence 48999999999999999988654333 5666666221 111233445555666666666
Q ss_pred EEEEEecCC
Q 043647 284 FLIVLDDVW 292 (1096)
Q Consensus 284 ~LlVlDdv~ 292 (1096)
.|+|+..
T Consensus 61 --wIidg~~ 67 (171)
T PRK07261 61 --WIIDGNY 67 (171)
T ss_pred --EEEcCcc
Confidence 5778774
No 179
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.98 E-value=0.0051 Score=70.74 Aligned_cols=165 Identities=15% Similarity=0.098 Sum_probs=88.9
Q ss_pred CccccchHHHHHHHHHHhcCC--------CCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-c---cCcEEEEEecCcc
Q 043647 178 PAVFGRDEDKAKILEMVLRDE--------PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-M---FNLRSWVCVSDDF 245 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~--------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~---f~~~~wv~~~~~~ 245 (1096)
.++.|.+..++++.+.+...- .+-...+-+.++|++|+|||++|+++++..... . .....|+.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 357789999988887763210 011234568999999999999999999865332 1 123444444321
Q ss_pred ChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHH-hCCCcEEEEEecCCCCC-------hhh-----HHHhhcccCCC--C
Q 043647 246 DILRITKSILESITFSPNSLKDLNQIQVQLREA-VAGKRFLIVLDDVWSKN-------YSL-----WNTLKSPFRAG--A 310 (1096)
Q Consensus 246 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~-------~~~-----~~~l~~~l~~~--~ 310 (1096)
++ +....+. .......+....++. -.+++++|+||+++..- ..+ ...+...+... .
T Consensus 261 ---eL----l~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 261 ---EL----LNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred ---hh----cccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 11 1111000 000111122222222 23578999999996420 011 12333333221 1
Q ss_pred CCcEEEEEcCchhhhhh-c----CCcceeeCCCCChHhHHHHHHHhh
Q 043647 311 SGSKILVTTCSTDVALT-V----GTAEYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 311 ~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a 352 (1096)
.+..||.||...+.... + .-...+.++..+.++..++|..+.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 24455666654433211 1 112458999999999999999886
No 180
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.97 E-value=0.021 Score=60.92 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHH
Q 043647 185 EDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRIT 251 (1096)
Q Consensus 185 ~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~ 251 (1096)
.-++++..++... +-|.+.|++|+|||++|+.+.+.. . ....++++....+..+++
T Consensus 9 ~l~~~~l~~l~~g-------~~vLL~G~~GtGKT~lA~~la~~l---g-~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG-------YPVHLRGPAGTGKTTLAMHVARKR---D-RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC-------CeEEEEcCCCCCHHHHHHHHHHHh---C-CCEEEEeCCccCCHHHHh
Confidence 3345555555322 346799999999999999998632 1 123455555555444443
No 181
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.019 Score=63.40 Aligned_cols=161 Identities=11% Similarity=0.043 Sum_probs=89.3
Q ss_pred cccc-chHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHHHH
Q 043647 179 AVFG-RDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 179 ~~vg-r~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.++| -+..++.+...+... .-.+...++|+.|+||||+|+.+.+..... ..+.. ....-...+.+..
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~~ 74 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRIDS 74 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHhc
Confidence 3566 555666777766433 235677999999999999998876542211 00000 0000011111110
Q ss_pred hccC------CCCCCCcHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchh-hh
Q 043647 257 SITF------SPNSLKDLNQIQVQLREA----VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTD-VA 325 (1096)
Q Consensus 257 ~l~~------~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~ 325 (1096)
.-.. .....-..+++...+... ..+.+-++|+|+++.-+....+.+...+..-..++.+|++|.++. +.
T Consensus 75 ~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll 154 (329)
T PRK08058 75 GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQIL 154 (329)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCc
Confidence 0000 000111233433333221 235566799999977766677777777766556777777776543 22
Q ss_pred hhc-CCcceeeCCCCChHhHHHHHHH
Q 043647 326 LTV-GTAEYYNLKLLSDDDCWSVFVK 350 (1096)
Q Consensus 326 ~~~-~~~~~~~l~~L~~~~~~~lf~~ 350 (1096)
..+ .....+++.+++.++..+.+..
T Consensus 155 ~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 155 PTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 211 2336799999999998777754
No 182
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.95 E-value=0.0041 Score=67.72 Aligned_cols=102 Identities=15% Similarity=0.137 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCc-EEEEEecCc-cChHHHHHHHHHhccCCCC
Q 043647 186 DKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNL-RSWVCVSDD-FDILRITKSILESITFSPN 263 (1096)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~~ 263 (1096)
-..++++.+..-. +-..+.|+|.+|+|||||++.+.+.....+-+. ++|+.+.+. .++.++.+.+...+.....
T Consensus 119 ~~~RvID~l~PiG----kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~ 194 (380)
T PRK12608 119 LSMRVVDLVAPIG----KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTF 194 (380)
T ss_pred hhHhhhhheeecC----CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecC
Confidence 3445777775432 224569999999999999999887543334454 477777765 4678888888887765443
Q ss_pred CCCcHHH-----HHHHHHHHh--CCCcEEEEEecC
Q 043647 264 SLKDLNQ-----IQVQLREAV--AGKRFLIVLDDV 291 (1096)
Q Consensus 264 ~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv 291 (1096)
+...... ....+.+++ +|++++||+|++
T Consensus 195 de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 195 DRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 2221111 111222222 689999999999
No 183
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.94 E-value=0.011 Score=59.17 Aligned_cols=177 Identities=20% Similarity=0.235 Sum_probs=96.0
Q ss_pred CccccchHHHHH---HHHHHhcCCC-CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHH
Q 043647 178 PAVFGRDEDKAK---ILEMVLRDEP-TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKS 253 (1096)
Q Consensus 178 ~~~vgr~~~~~~---l~~~L~~~~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 253 (1096)
++++|.++...+ |++.|-.++. ++..++-|..+|++|.|||.+|+++++...+- ++.+. ..+-
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp------~l~vk-------at~l 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP------LLLVK-------ATEL 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc------eEEec-------hHHH
Confidence 468898876654 5566644432 44568899999999999999999999976542 11111 1111
Q ss_pred HHHhccCCCCCCCcHHHHHHHHHHH-hCCCcEEEEEecCCCCC----h--------hhHHHhhcccCC--CCCCcEEEEE
Q 043647 254 ILESITFSPNSLKDLNQIQVQLREA-VAGKRFLIVLDDVWSKN----Y--------SLWNTLKSPFRA--GASGSKILVT 318 (1096)
Q Consensus 254 i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~----~--------~~~~~l~~~l~~--~~~gs~iivT 318 (1096)
|.+.++ |-...+..+.++ -+.-+|.+.+|.++-.. + +....+...+.. .+-|-..|-.
T Consensus 188 iGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 188 IGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred HHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 222222 111122222222 24568999999884311 0 112222222222 2345555666
Q ss_pred cCchhhhhhc-C--CcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCc
Q 043647 319 TCSTDVALTV-G--TAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLP 379 (1096)
Q Consensus 319 tR~~~v~~~~-~--~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 379 (1096)
|..++..... . -...++...-+++|-.+++..++-.-. -....-.+.++++.+|+-
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~P-----lpv~~~~~~~~~~t~g~S 319 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFP-----LPVDADLRYLAAKTKGMS 319 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCC-----CccccCHHHHHHHhCCCC
Confidence 6655544322 1 124566777788888899988872111 111122455667766653
No 184
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.92 E-value=0.011 Score=73.09 Aligned_cols=119 Identities=20% Similarity=0.266 Sum_probs=69.5
Q ss_pred CccccchHHHHHHHHHHhcCCC----CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEP----TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKS 253 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 253 (1096)
..++|.++.++.+.+.+..... ......++.++|+.|+|||++|+.++... +...+.++.+.-.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l----~~~~~~~d~se~~~~~~---- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL----GVHLERFDMSEYMEKHT---- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh----cCCeEEEeCchhhhccc----
Confidence 4578999999988888764211 12234578999999999999999998743 22334454443222111
Q ss_pred HHHhccCCCC--CCCcHHHHHHHHHHHhC-CCcEEEEEecCCCCChhhHHHhhcccCC
Q 043647 254 ILESITFSPN--SLKDLNQIQVQLREAVA-GKRFLIVLDDVWSKNYSLWNTLKSPFRA 308 (1096)
Q Consensus 254 i~~~l~~~~~--~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 308 (1096)
+...++.... ....... +.+.++ ...-+++||+++..+.+.++.+...+..
T Consensus 526 ~~~lig~~~gyvg~~~~~~----l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 526 VSRLIGAPPGYVGFEQGGL----LTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred HHHHhcCCCCCcccchhhH----HHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 1111221111 1111222 233333 3446999999988777777777766554
No 185
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.91 E-value=0.04 Score=59.91 Aligned_cols=175 Identities=11% Similarity=0.065 Sum_probs=98.6
Q ss_pred HHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHHHHh-------c
Q 043647 187 KAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSILES-------I 258 (1096)
Q Consensus 187 ~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~-------l 258 (1096)
.+.+...+..+ .-...+.+.|+.|+||+++|+.++...--. ... ....+.-...+.+... +
T Consensus 11 ~~~l~~~~~~~----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i 79 (325)
T PRK06871 11 YQQITQAFQQG----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-------DQPCGQCHSCHLFQAGNHPDFHIL 79 (325)
T ss_pred HHHHHHHHHcC----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEE
Confidence 44555555332 234677899999999999998877643211 000 0000011111111110 0
Q ss_pred cCCCCCCCcHHHHHHHHHHHh-----CCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchh-hhhhc-CCc
Q 043647 259 TFSPNSLKDLNQIQVQLREAV-----AGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTD-VALTV-GTA 331 (1096)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~ 331 (1096)
.......-..+++.. +.+.+ .+++-++|+|+++.-+......+...+-.-..++.+|++|.+.+ +...+ ...
T Consensus 80 ~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC 158 (325)
T PRK06871 80 EPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC 158 (325)
T ss_pred ccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc
Confidence 000011112344332 22222 46677889999988777778888777766556777777776553 33221 223
Q ss_pred ceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhH
Q 043647 332 EYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAA 382 (1096)
Q Consensus 332 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 382 (1096)
..+.+.+++.++..+.+...... ....+...+..++|.|..+
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~~~~---------~~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQSSA---------EISEILTALRINYGRPLLA 200 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHHhcc---------ChHHHHHHHHHcCCCHHHH
Confidence 57899999999999888765410 1112456688899999643
No 186
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.91 E-value=3.9e-05 Score=79.85 Aligned_cols=172 Identities=13% Similarity=0.055 Sum_probs=98.6
Q ss_pred CcCCCCccceeeccccccc-----ccccccccCCCCcEEeccCc---ccCcccCc-------cccCCCCCceEEeccccc
Q 043647 574 SIGDLKHLRYINLSETMIR-----CLPESICSLCNLQFLILRGC---YRLKKLPS-------NLRNLINLRHLVVTYVDL 638 (1096)
Q Consensus 574 ~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~---~~l~~lp~-------~i~~l~~L~~L~l~~~~~ 638 (1096)
.+..+..+.+|+|+||.+. .+-+.+.+.++|+.-+++.- ....++|+ .+...++|++|+|++|..
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 3456788999999999875 34566777889999988862 11223453 345567999999999985
Q ss_pred cccCccc----CCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCCeE
Q 043647 639 IREMPLG----IKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKEL 714 (1096)
Q Consensus 639 ~~~~p~~----i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 714 (1096)
...-+++ +..++.|++|....++...... ..++ ...............+.|+.+
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag-~~l~---------------------~al~~l~~~kk~~~~~~Lrv~ 162 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAG-GRLG---------------------RALFELAVNKKAASKPKLRVF 162 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHH-HHHH---------------------HHHHHHHHHhccCCCcceEEE
Confidence 4443333 4567788887644333221100 0000 000111233344556788888
Q ss_pred EEeeeCCCCCCcccCC---ccccceeEEeecCCCCCC-CCC----CCCCcCCcceeecccc
Q 043647 715 TVKCYGGTVFPSWMGD---PLFSNIVLLRLEDCEKCT-SLP----SLGLLGSLKNLTIKGM 767 (1096)
Q Consensus 715 ~l~~~~~~~~p~~~~~---~~~~~L~~L~L~~~~~~~-~l~----~l~~l~~L~~L~L~~~ 767 (1096)
....|.....+..... ...+.|+.+.++.|..-. .+. .+..+|+|+.|+|.++
T Consensus 163 i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN 223 (382)
T KOG1909|consen 163 ICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN 223 (382)
T ss_pred EeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc
Confidence 8888776655532111 124667777776653211 110 3455666666666653
No 187
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.90 E-value=2.5e-05 Score=88.40 Aligned_cols=96 Identities=24% Similarity=0.212 Sum_probs=51.8
Q ss_pred cceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceEEeccc
Q 043647 557 KLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLVVTYV 636 (1096)
Q Consensus 557 ~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~ 636 (1096)
.|.+-++++|.+..+-.++.-+++|+.|||++|++.+.- .+..|.+|++|||++| .+..+|.--..-.+|..|.+++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhhheeeeeccc
Confidence 455555566655555555555566666666666665553 5556666666666663 45555542111122666666665
Q ss_pred cccccCcccCCCCCCCCcCC
Q 043647 637 DLIREMPLGIKELKCLQMLS 656 (1096)
Q Consensus 637 ~~~~~~p~~i~~L~~L~~L~ 656 (1096)
. ++.+ .+|.+|++|+.|+
T Consensus 243 ~-l~tL-~gie~LksL~~LD 260 (1096)
T KOG1859|consen 243 A-LTTL-RGIENLKSLYGLD 260 (1096)
T ss_pred H-HHhh-hhHHhhhhhhccc
Confidence 5 3333 3455555555554
No 188
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.89 E-value=0.038 Score=60.03 Aligned_cols=97 Identities=14% Similarity=0.213 Sum_probs=64.1
Q ss_pred CCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchh-hhhhc-CCcceeeCCCCChHhHHHHHHHhhcCCCC
Q 043647 280 AGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTD-VALTV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRD 357 (1096)
Q Consensus 280 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 357 (1096)
.+++-++|+|+++.-+...-..+...+..-..++.+|++|...+ +...+ .....+.+.+++.+++.+.+....
T Consensus 111 ~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----- 185 (319)
T PRK08769 111 YGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----- 185 (319)
T ss_pred cCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-----
Confidence 35677999999987766666667666655455677777776543 32221 223578899999999988776431
Q ss_pred CCCCcchhHHHHHHHHHhCCCchhHHHHH
Q 043647 358 VGLHRHMGSIRKKVVQKCRGLPLAAETLG 386 (1096)
Q Consensus 358 ~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 386 (1096)
. ..+.+..++..++|.|+.+..+.
T Consensus 186 ~-----~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 V-----SERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred C-----ChHHHHHHHHHcCCCHHHHHHHh
Confidence 0 11235678999999998765443
No 189
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.87 E-value=0.00012 Score=65.48 Aligned_cols=92 Identities=24% Similarity=0.228 Sum_probs=72.1
Q ss_pred cCCCCcceEEEecccccccCCCCcCCC-CccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCce
Q 043647 552 LPKFTKLRVLSLKKYYITELPHSIGDL-KHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRH 630 (1096)
Q Consensus 552 ~~~~~~Lr~L~L~~~~~~~lp~~i~~l-~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 630 (1096)
+.+...|...+|++|.+.++|..|... +-+..|++++|.|..+|..+..++.|+.|+++.| .+...|.-|..|.+|-.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDM 127 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHH
Confidence 345667888888888888888777544 4788888888888888888888888888888885 67778887877888888
Q ss_pred EEeccccccccCccc
Q 043647 631 LVVTYVDLIREMPLG 645 (1096)
Q Consensus 631 L~l~~~~~~~~~p~~ 645 (1096)
|+..++. ...+|-.
T Consensus 128 Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 128 LDSPENA-RAEIDVD 141 (177)
T ss_pred hcCCCCc-cccCcHH
Confidence 8887776 5555543
No 190
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.85 E-value=0.0073 Score=71.08 Aligned_cols=178 Identities=18% Similarity=0.205 Sum_probs=92.5
Q ss_pred CccccchHHHHHHHHHH---hcCC----CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHH
Q 043647 178 PAVFGRDEDKAKILEMV---LRDE----PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L---~~~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 250 (1096)
.+++|.++.++++.+++ ...+ .+....+-+.++|++|+|||++|++++...... ++.++. .++
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~------~~~i~~----~~~ 124 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP------FFSISG----SDF 124 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC------eeeccH----HHH
Confidence 35778877665554433 2211 012234558899999999999999998754321 222221 111
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCC----------hhhHHH----hhcccCC--CCCCcE
Q 043647 251 TKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKN----------YSLWNT----LKSPFRA--GASGSK 314 (1096)
Q Consensus 251 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~----l~~~l~~--~~~gs~ 314 (1096)
..... + .....+...+....+..+.+|++|+++.-. ...+.. +...+.. ...+-.
T Consensus 125 ~~~~~---g------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~ 195 (495)
T TIGR01241 125 VEMFV---G------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVI 195 (495)
T ss_pred HHHHh---c------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeE
Confidence 11100 0 112233333444445677899999995421 011222 2222211 123445
Q ss_pred EEEEcCchhhhh-hc----CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCc
Q 043647 315 ILVTTCSTDVAL-TV----GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLP 379 (1096)
Q Consensus 315 iivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 379 (1096)
||.||..++... .+ .-...+.++..+.++-.++|..+.-... ... ......+++.+.|.-
T Consensus 196 vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~-~~~----~~~l~~la~~t~G~s 260 (495)
T TIGR01241 196 VIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKK-LAP----DVDLKAVARRTPGFS 260 (495)
T ss_pred EEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCC-CCc----chhHHHHHHhCCCCC
Confidence 666776543211 11 1235688888898888889887763211 111 112346777777743
No 191
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.82 E-value=0.0021 Score=65.85 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEe
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCV 241 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~ 241 (1096)
-.++|+|..|.||||++..+..+... .|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~-~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRH-KFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcc-cCCEEEEEec
Confidence 46889999999999999988875333 6777777654
No 192
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.81 E-value=0.031 Score=64.39 Aligned_cols=170 Identities=12% Similarity=0.066 Sum_probs=99.8
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccc-------ccccCcEEEEEecCccChHHHH
Q 043647 179 AVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKA-------VEMFNLRSWVCVSDDFDILRIT 251 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-------~~~f~~~~wv~~~~~~~~~~~~ 251 (1096)
.+-+|+.+..+|-+++-.--......+.+.|.|.+|+|||..+..|.+... ...|+ .+.|+.-.-..+.+++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIY 475 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHH
Confidence 456899999999887743322223345899999999999999999998543 11343 2344444445689999
Q ss_pred HHHHHhccCCCCCCCcHHHHHHHHHHHh-----CCCcEEEEEecCCCCChhhHHHhhcccCC-CCCCcEEEEEcC--chh
Q 043647 252 KSILESITFSPNSLKDLNQIQVQLREAV-----AGKRFLIVLDDVWSKNYSLWNTLKSPFRA-GASGSKILVTTC--STD 323 (1096)
Q Consensus 252 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtR--~~~ 323 (1096)
..|..++.+... ........+..+. +.+.+++++|+++.--...-+-+...|.| ..++||++|.+= ..+
T Consensus 476 ~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmd 552 (767)
T KOG1514|consen 476 EKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMD 552 (767)
T ss_pred HHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccccc
Confidence 999999987643 2333344455544 34578888998743200112223333443 346788766542 111
Q ss_pred hhhhc-C-------CcceeeCCCCChHhHHHHHHHhh
Q 043647 324 VALTV-G-------TAEYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 324 v~~~~-~-------~~~~~~l~~L~~~~~~~lf~~~a 352 (1096)
....+ . ....+..++.++++-.++...+.
T Consensus 553 lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL 589 (767)
T KOG1514|consen 553 LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARL 589 (767)
T ss_pred CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhh
Confidence 11110 0 11345556666666666655554
No 193
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.80 E-value=0.052 Score=58.89 Aligned_cols=176 Identities=11% Similarity=0.054 Sum_probs=98.9
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhc-------
Q 043647 186 DKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESI------- 258 (1096)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l------- 258 (1096)
..+++.+.+..+ .-...+.+.|+.|+||+++|+.+....--..-+. ...+.-...+.+...-
T Consensus 11 ~~~~l~~~~~~~----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i 79 (319)
T PRK06090 11 VWQNWKAGLDAG----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQS-------EACGFCHSCELMQSGNHPDLHVI 79 (319)
T ss_pred HHHHHHHHHHcC----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCHHHHHHHcCCCCCEEEE
Confidence 344555555322 2356789999999999999987765321110000 0000001111111000
Q ss_pred cCC-CCCCCcHHHHHHHHHHHh-----CCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchh-hhhhc-CC
Q 043647 259 TFS-PNSLKDLNQIQVQLREAV-----AGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTD-VALTV-GT 330 (1096)
Q Consensus 259 ~~~-~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~-~~ 330 (1096)
... ....-.++++.. +.+.+ .+++-++|+|+++.-+......+...+..-..++.+|++|.+.+ +...+ ..
T Consensus 80 ~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SR 158 (319)
T PRK06090 80 KPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSR 158 (319)
T ss_pred ecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc
Confidence 000 001122344332 22332 35566889999988777778888777766556677776666543 33222 23
Q ss_pred cceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHH
Q 043647 331 AEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETL 385 (1096)
Q Consensus 331 ~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 385 (1096)
...+.+.+++.+++.+.+.... . . .+..++..++|.|+.+..+
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~-----~---~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 159 CQQWVVTPPSTAQAMQWLKGQG-----I---T----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ceeEeCCCCCHHHHHHHHHHcC-----C---c----hHHHHHHHcCCCHHHHHHH
Confidence 3578999999999988876431 1 1 1346788999999876544
No 194
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.79 E-value=0.033 Score=69.19 Aligned_cols=52 Identities=25% Similarity=0.374 Sum_probs=38.8
Q ss_pred CCccccchHHHHHHHHHHhcCC-CCCCCceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 177 EPAVFGRDEDKAKILEMVLRDE-PTDANFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 177 ~~~~vgr~~~~~~l~~~L~~~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
..+++|.++.+++|.+++.... .+..+.+++.++|++|+|||++|+.+++..
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3458899999999888764221 111234589999999999999999999864
No 195
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.044 Score=58.17 Aligned_cols=186 Identities=16% Similarity=0.154 Sum_probs=101.9
Q ss_pred cccchHHHHHHHHHHhcCC--------CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHH
Q 043647 180 VFGRDEDKAKILEMVLRDE--------PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRIT 251 (1096)
Q Consensus 180 ~vgr~~~~~~l~~~L~~~~--------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~ 251 (1096)
+=|-++.+++|.+..--+- -+-..++=|.++|++|.|||-||++|++.-.. -|+.|... ++.
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A------tFIrvvgS----ElV 222 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA------TFIRVVGS----ELV 222 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc------eEEEeccH----HHH
Confidence 4577888888877652211 12234667899999999999999999985433 23333222 222
Q ss_pred HHHHHhccCCCCCCCcHHHHHHHHHHHh-CCCcEEEEEecCCCC-----------Chhh---HHHhhcccCCCC--CCcE
Q 043647 252 KSILESITFSPNSLKDLNQIQVQLREAV-AGKRFLIVLDDVWSK-----------NYSL---WNTLKSPFRAGA--SGSK 314 (1096)
Q Consensus 252 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~-----------~~~~---~~~l~~~l~~~~--~gs~ 314 (1096)
+..+ +. -..+.+.+-+.- ...++.|++|.++.. +.+. .-++...+..+. ..-|
T Consensus 223 qKYi----GE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvK 292 (406)
T COG1222 223 QKYI----GE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVK 292 (406)
T ss_pred HHHh----cc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeE
Confidence 2211 11 122333333333 356899999998632 1111 122333333322 2458
Q ss_pred EEEEcCchhhhhhc-----CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCc----hhHHHH
Q 043647 315 ILVTTCSTDVALTV-----GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLP----LAAETL 385 (1096)
Q Consensus 315 iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P----Lai~~~ 385 (1096)
||..|-..++.... .-++.++++.-+.+.-.++|.-++- ..+...+-+++ .+++.+.|.- -|+.+=
T Consensus 293 VI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtr-kM~l~~dvd~e----~la~~~~g~sGAdlkaictE 367 (406)
T COG1222 293 VIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTR-KMNLADDVDLE----LLARLTEGFSGADLKAICTE 367 (406)
T ss_pred EEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhh-hccCccCcCHH----HHHHhcCCCchHHHHHHHHH
Confidence 99888766554321 2235688875566666778877762 22222223343 4556666553 455566
Q ss_pred HHHhc
Q 043647 386 GGLLR 390 (1096)
Q Consensus 386 ~~~l~ 390 (1096)
|++++
T Consensus 368 AGm~A 372 (406)
T COG1222 368 AGMFA 372 (406)
T ss_pred HhHHH
Confidence 66653
No 196
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.77 E-value=0.012 Score=73.51 Aligned_cols=124 Identities=19% Similarity=0.208 Sum_probs=68.5
Q ss_pred CccccchHHHHHHHHHHhcCCC----CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEP----TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKS 253 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 253 (1096)
..++|.+..++.+...+..... ++....++.++|+.|+|||++|+.+++..... -...+.+.++.-.. ..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~-~~~~i~id~se~~~-~~---- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS-DDAMVRIDMSEFME-KH---- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC-CCcEEEEEhHHhhh-hh----
Confidence 4588999999998888754221 12223578899999999999999988643211 12233444432211 11
Q ss_pred HHHhccCCCCCCCcHHHHHHHHHHHhC-CCcEEEEEecCCCCChhhHHHhhcccCC
Q 043647 254 ILESITFSPNSLKDLNQIQVQLREAVA-GKRFLIVLDDVWSKNYSLWNTLKSPFRA 308 (1096)
Q Consensus 254 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 308 (1096)
....+.+.+......+. ...+.+.++ ...-+|+||++...+...+..+...+..
T Consensus 642 ~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~ 696 (857)
T PRK10865 642 SVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDD 696 (857)
T ss_pred hHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhh
Confidence 11122222111111111 111223232 2336999999987777777777665543
No 197
>PRK06526 transposase; Provisional
Probab=96.77 E-value=0.0019 Score=67.85 Aligned_cols=100 Identities=16% Similarity=0.132 Sum_probs=52.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcE
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKRF 284 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 284 (1096)
..+.|+|++|+|||+||.++........+. +.|+ +..++...+..... .. .....+.+. .+.-
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~-v~f~------t~~~l~~~l~~~~~-----~~---~~~~~l~~l--~~~d 161 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHR-VLFA------TAAQWVARLAAAHH-----AG---RLQAELVKL--GRYP 161 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCc-hhhh------hHHHHHHHHHHHHh-----cC---cHHHHHHHh--ccCC
Confidence 468999999999999999988754332222 2332 23344444433211 01 112223322 2345
Q ss_pred EEEEecCCCCChhhH-HH-hhcccCC-CCCCcEEEEEcCch
Q 043647 285 LIVLDDVWSKNYSLW-NT-LKSPFRA-GASGSKILVTTCST 322 (1096)
Q Consensus 285 LlVlDdv~~~~~~~~-~~-l~~~l~~-~~~gs~iivTtR~~ 322 (1096)
+||+||+.......| .. +...+.. ...++ +|+||..+
T Consensus 162 lLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 162 LLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred EEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 899999965432222 22 2222211 12344 88888653
No 198
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.71 E-value=0.00093 Score=80.24 Aligned_cols=78 Identities=26% Similarity=0.319 Sum_probs=45.8
Q ss_pred CcceEEEecccccc--cCCCCcC-CCCccceeeccccccc--ccccccccCCCCcEEeccCcccCcccCccccCCCCCce
Q 043647 556 TKLRVLSLKKYYIT--ELPHSIG-DLKHLRYINLSETMIR--CLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRH 630 (1096)
Q Consensus 556 ~~Lr~L~L~~~~~~--~lp~~i~-~l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 630 (1096)
.+|+.||+++...- .-|..++ -|+.|+.|.++|-.+. ++-.-..+++||..||+|+ +++..+ .++++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCc-HHHhccccHHH
Confidence 56777777765421 1133343 3577777777765432 2233345667777777777 356666 55677777777
Q ss_pred EEecc
Q 043647 631 LVVTY 635 (1096)
Q Consensus 631 L~l~~ 635 (1096)
|.+.+
T Consensus 200 L~mrn 204 (699)
T KOG3665|consen 200 LSMRN 204 (699)
T ss_pred HhccC
Confidence 76654
No 199
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.00016 Score=73.41 Aligned_cols=83 Identities=25% Similarity=0.326 Sum_probs=49.0
Q ss_pred CCCcceEEEeccccccc---CCCCcCCCCccceeeccccccccccccc-ccCCCCcEEeccCcccC--cccCccccCCCC
Q 043647 554 KFTKLRVLSLKKYYITE---LPHSIGDLKHLRYINLSETMIRCLPESI-CSLCNLQFLILRGCYRL--KKLPSNLRNLIN 627 (1096)
Q Consensus 554 ~~~~Lr~L~L~~~~~~~---lp~~i~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~l--~~lp~~i~~l~~ 627 (1096)
....++.|||.+|.|+. +-.-+.+|++|++|+|+.|++..--..+ -.+.+|++|-|.+. .+ ......+..++.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT-~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT-GLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC-CCChhhhhhhhhcchh
Confidence 45677777777777653 2233457777788888777654221111 34567777777663 22 223334566666
Q ss_pred CceEEecccc
Q 043647 628 LRHLVVTYVD 637 (1096)
Q Consensus 628 L~~L~l~~~~ 637 (1096)
++.|+++.|.
T Consensus 148 vtelHmS~N~ 157 (418)
T KOG2982|consen 148 VTELHMSDNS 157 (418)
T ss_pred hhhhhhccch
Confidence 7777776663
No 200
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.68 E-value=0.0066 Score=75.45 Aligned_cols=135 Identities=18% Similarity=0.165 Sum_probs=75.5
Q ss_pred CccccchHHHHHHHHHHhcCC----CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDE----PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKS 253 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 253 (1096)
..++|.++.++.+.+.+.... .+.....++.++|+.|+|||.+|+++...... .....+-++++.-.+. ..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~-~~~~~~~~dmse~~~~----~~ 640 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG-GEQNLITINMSEFQEA----HT 640 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC-CCcceEEEeHHHhhhh----hh
Confidence 468999999999998885421 12234568899999999999999888764311 1111222222211111 11
Q ss_pred HHHhccCCCC--CCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCCC-----------CCcEEEEEcC
Q 043647 254 ILESITFSPN--SLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGA-----------SGSKILVTTC 320 (1096)
Q Consensus 254 i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR 320 (1096)
+..-++..+. +......+...++ +....+|+||++...+...++.+...+..+. ..+-||+||.
T Consensus 641 ~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSN 717 (852)
T TIGR03345 641 VSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSN 717 (852)
T ss_pred hccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCC
Confidence 1111221111 1111122333333 2556799999998777777777766655432 3455666764
No 201
>PRK08181 transposase; Validated
Probab=96.67 E-value=0.0033 Score=66.45 Aligned_cols=101 Identities=17% Similarity=0.076 Sum_probs=53.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcE
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKRF 284 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 284 (1096)
.-+.++|++|+|||.||.++.+...... ..+.|++ ..++...+..... ..+.+.. +. .+ .+-=
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g-~~v~f~~------~~~L~~~l~~a~~-----~~~~~~~---l~-~l-~~~d 169 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENG-WRVLFTR------TTDLVQKLQVARR-----ELQLESA---IA-KL-DKFD 169 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcC-Cceeeee------HHHHHHHHHHHHh-----CCcHHHH---HH-HH-hcCC
Confidence 4589999999999999999887543222 2345554 3445555533211 1122222 22 22 2344
Q ss_pred EEEEecCCCCChhhHH--HhhcccCCCCCCcEEEEEcCch
Q 043647 285 LIVLDDVWSKNYSLWN--TLKSPFRAGASGSKILVTTCST 322 (1096)
Q Consensus 285 LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~iivTtR~~ 322 (1096)
||||||+.......|. .+...+.....+..+||||...
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 9999999654333322 2222222211123688888653
No 202
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.67 E-value=0.0083 Score=67.65 Aligned_cols=151 Identities=16% Similarity=0.221 Sum_probs=81.1
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHH-HH
Q 043647 179 AVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSI-LE 256 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i-~~ 256 (1096)
.++||++.++.+...+..+. -|.|.|++|+|||++|+.+....... .|. ++.+.-. .+.+++..+ +.
T Consensus 21 ~i~gre~vI~lll~aalag~-------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~---~~~~~ft-tp~DLfG~l~i~ 89 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE-------SVFLLGPPGIAKSLIARRLKFAFQNARAFE---YLMTRFS-TPEEVFGPLSIQ 89 (498)
T ss_pred hccCcHHHHHHHHHHHccCC-------CEEEECCCChhHHHHHHHHHHHhcccCcce---eeeeeec-CcHHhcCcHHHh
Confidence 48999999999998886543 48899999999999999998743221 222 1111100 122222111 11
Q ss_pred hccCCCCCCCcHHHHHHHHHHHhCC---CcEEEEEecCCCCChhhHHHhhcccCCC-----C----CCcEEEEEcCchhh
Q 043647 257 SITFSPNSLKDLNQIQVQLREAVAG---KRFLIVLDDVWSKNYSLWNTLKSPFRAG-----A----SGSKILVTTCSTDV 324 (1096)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~l~~~l~~---kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----~----~gs~iivTtR~~~v 324 (1096)
..... . .......| .--++++|+++.........+...+... + -..+++|++.++-.
T Consensus 90 ~~~~~----g-------~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LP 158 (498)
T PRK13531 90 ALKDE----G-------RYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELP 158 (498)
T ss_pred hhhhc----C-------chhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCc
Confidence 10000 0 01111112 1228999999987766666665554211 1 12356665554322
Q ss_pred h------hhcCC-cceeeCCCCCh-HhHHHHHHHh
Q 043647 325 A------LTVGT-AEYYNLKLLSD-DDCWSVFVKH 351 (1096)
Q Consensus 325 ~------~~~~~-~~~~~l~~L~~-~~~~~lf~~~ 351 (1096)
. ..+.. .-.+.+++++. ++..+++...
T Consensus 159 E~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 159 EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 1 01111 13578899975 4447777654
No 203
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.67 E-value=0.0059 Score=66.17 Aligned_cols=121 Identities=16% Similarity=0.201 Sum_probs=69.9
Q ss_pred cchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCC
Q 043647 182 GRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFS 261 (1096)
Q Consensus 182 gr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 261 (1096)
+|........+++..-.. ....+-+.|+|..|+|||.||.++++....+.+. +.++++ .+++.++......
T Consensus 135 ~~~~~~~~~~~fi~~~~~-~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~-v~~~~~------~~l~~~lk~~~~~- 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP-GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVS-STLLHF------PEFIRELKNSISD- 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhc-cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCC-EEEEEH------HHHHHHHHHHHhc-
Confidence 455555555566643221 1234678999999999999999999875433333 455554 2455555444321
Q ss_pred CCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHH--hhccc-CCC-CCCcEEEEEcC
Q 043647 262 PNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNT--LKSPF-RAG-ASGSKILVTTC 320 (1096)
Q Consensus 262 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~iivTtR 320 (1096)
.+.. ..+.. + .+-=||||||+..+....|.. +...+ ... ..+-.+|+||-
T Consensus 206 ----~~~~---~~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 206 ----GSVK---EKIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred ----CcHH---HHHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 1122 22222 2 245589999998776667753 44433 221 23456888885
No 204
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.65 E-value=0.0099 Score=74.56 Aligned_cols=124 Identities=19% Similarity=0.257 Sum_probs=70.9
Q ss_pred CccccchHHHHHHHHHHhcCCC----CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEP----TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKS 253 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 253 (1096)
..++|.+..++.+.+.+..... +.....++.++|+.|+|||++|+.+....... ....+.++++.-.+...+ .
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~-~~~~i~~d~s~~~~~~~~-~- 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD-EDAMVRIDMSEYMEKHSV-A- 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC-CCcEEEEechhhcccchH-H-
Confidence 4589999999999998865321 12234678899999999999999998743211 122333333332221111 1
Q ss_pred HHHhccCCCC--CCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCC
Q 043647 254 ILESITFSPN--SLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAG 309 (1096)
Q Consensus 254 i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 309 (1096)
.-++..+. +......+...++ +....+|+||++...+...+..+...+..+
T Consensus 642 --~l~g~~~g~~g~~~~g~l~~~v~---~~p~~vlllDeieka~~~v~~~Ll~~l~~g 694 (852)
T TIGR03346 642 --RLIGAPPGYVGYEEGGQLTEAVR---RKPYSVVLFDEVEKAHPDVFNVLLQVLDDG 694 (852)
T ss_pred --HhcCCCCCccCcccccHHHHHHH---cCCCcEEEEeccccCCHHHHHHHHHHHhcC
Confidence 11121111 1111122222232 233458999999888878888877766443
No 205
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.64 E-value=0.14 Score=56.61 Aligned_cols=203 Identities=13% Similarity=0.130 Sum_probs=121.9
Q ss_pred chHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHH-HHHhccccccccCcEEEEEecCc---cChHHHHHHHHHhc
Q 043647 183 RDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLA-RVAFDDKAVEMFNLRSWVCVSDD---FDILRITKSILESI 258 (1096)
Q Consensus 183 r~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l 258 (1096)
|.+..++|..||.+.. -.+|.|.||-|.||+.|+ .++..+.. .+..+.|.+- .+...++..++.++
T Consensus 1 R~e~~~~L~~wL~e~~-----~TFIvV~GPrGSGK~elV~d~~L~~r~-----~vL~IDC~~i~~ar~D~~~I~~lA~qv 70 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP-----NTFIVVQGPRGSGKRELVMDHVLKDRK-----NVLVIDCDQIVKARGDAAFIKNLASQV 70 (431)
T ss_pred CchHHHHHHHHHhcCC-----CeEEEEECCCCCCccHHHHHHHHhCCC-----CEEEEEChHhhhccChHHHHHHHHHhc
Confidence 6678899999996643 369999999999999999 77776532 2555555432 23445566666665
Q ss_pred cCCC-----------------------CC-CCc-HHHHHHH-------HHHH-------------------hC---CCcE
Q 043647 259 TFSP-----------------------NS-LKD-LNQIQVQ-------LREA-------------------VA---GKRF 284 (1096)
Q Consensus 259 ~~~~-----------------------~~-~~~-~~~~~~~-------l~~~-------------------l~---~kr~ 284 (1096)
|--+ .+ ..+ ..++... |++. ++ .+|=
T Consensus 71 GY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~P 150 (431)
T PF10443_consen 71 GYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRP 150 (431)
T ss_pred CCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCC
Confidence 4211 11 111 1222221 1110 10 1255
Q ss_pred EEEEecCCCCCh---hhHHHhhcc---cCCCCCCcEEEEEcCchhhhhhcC------CcceeeCCCCChHhHHHHHHHhh
Q 043647 285 LIVLDDVWSKNY---SLWNTLKSP---FRAGASGSKILVTTCSTDVALTVG------TAEYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 285 LlVlDdv~~~~~---~~~~~l~~~---l~~~~~gs~iivTtR~~~v~~~~~------~~~~~~l~~L~~~~~~~lf~~~a 352 (1096)
+||+||...... ..|+.+... +- ..+-.+||++|-+......+. ..+.+.+.-.+.+.|.++...+.
T Consensus 151 VVVIdnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L 229 (431)
T PF10443_consen 151 VVVIDNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQL 229 (431)
T ss_pred EEEEcchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHh
Confidence 899999865321 123333221 11 234568999998776554432 23568899999999999998887
Q ss_pred cCCCCC------------CCC----cchhHHHHHHHHHhCCCchhHHHHHHHhccCCCHH
Q 043647 353 FEKRDV------------GLH----RHMGSIRKKVVQKCRGLPLAAETLGGLLRCKQSDD 396 (1096)
Q Consensus 353 ~~~~~~------------~~~----~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~ 396 (1096)
-..... ... ....+-....++.+||=-.-+..+++.++...+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 230 DEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred cccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 432110 000 12333446778888998888899998888776543
No 206
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.60 E-value=0.0022 Score=63.57 Aligned_cols=100 Identities=17% Similarity=0.189 Sum_probs=50.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKR 283 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 283 (1096)
..-+.|+|..|+|||.||.++.+....+.+ .+.|++ ..+++..+-. ... ...... .++ .+.+ -
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~-~v~f~~------~~~L~~~l~~----~~~-~~~~~~---~~~-~l~~-~ 109 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGY-SVLFIT------ASDLLDELKQ----SRS-DGSYEE---LLK-RLKR-V 109 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEE------HHHHHHHHHC----CHC-CTTHCH---HHH-HHHT-S
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCc-ceeEee------cCceeccccc----ccc-ccchhh---hcC-cccc-c
Confidence 356999999999999999999876433322 355564 3344444432 111 111222 222 2322 3
Q ss_pred EEEEEecCCCCChhhHHH--hhcccCC-CCCCcEEEEEcCc
Q 043647 284 FLIVLDDVWSKNYSLWNT--LKSPFRA-GASGSKILVTTCS 321 (1096)
Q Consensus 284 ~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtR~ 321 (1096)
=||||||+.......|.. +...+.. ..++ .+||||..
T Consensus 110 dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 110 DLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp SCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred cEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 477899997765444442 1111111 1123 57888864
No 207
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.58 E-value=0.0067 Score=60.76 Aligned_cols=128 Identities=20% Similarity=0.196 Sum_probs=64.2
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCc------cChHH----
Q 043647 181 FGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDD------FDILR---- 249 (1096)
Q Consensus 181 vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~------~~~~~---- 249 (1096)
..+..+....++.|.. ..++.+.|++|.|||.||.+..-+.... .|+.++++.-.-+ +-+-+
T Consensus 3 ~p~~~~Q~~~~~al~~-------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN-------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp ---SHHHHHHHHHHHH--------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred cCCCHHHHHHHHHHHh-------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 3456667777777762 4589999999999999998877665444 7888877642111 00000
Q ss_pred ------HHHHHHHhccCCCCCCCcHHHHHHH------HHHHhCCC---cEEEEEecCCCCChhhHHHhhcccCCCCCCcE
Q 043647 250 ------ITKSILESITFSPNSLKDLNQIQVQ------LREAVAGK---RFLIVLDDVWSKNYSLWNTLKSPFRAGASGSK 314 (1096)
Q Consensus 250 ------~~~~i~~~l~~~~~~~~~~~~~~~~------l~~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 314 (1096)
=+.+.+..+. .....+.+... --.+++|+ ..+||+|++.+....++..+... .+.|||
T Consensus 76 ~~p~~~p~~d~l~~~~----~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~sk 148 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF----GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSK 148 (205)
T ss_dssp --TTTHHHHHHHTTTS-----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-E
T ss_pred HHHHHHHHHHHHHHHh----ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcE
Confidence 0111122211 11112221110 01234554 46999999988777777776544 467899
Q ss_pred EEEEcCch
Q 043647 315 ILVTTCST 322 (1096)
Q Consensus 315 iivTtR~~ 322 (1096)
||++=-..
T Consensus 149 ii~~GD~~ 156 (205)
T PF02562_consen 149 IIITGDPS 156 (205)
T ss_dssp EEEEE---
T ss_pred EEEecCce
Confidence 99986443
No 208
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.54 E-value=0.00016 Score=86.14 Aligned_cols=138 Identities=23% Similarity=0.287 Sum_probs=64.6
Q ss_pred CCCcCeEEEeCCCCCcccCCCC---CCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCcccccc
Q 043647 939 LNSLHNIYVWDCPSLVSFPEGG---LPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPE 1015 (1096)
Q Consensus 939 l~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~ 1015 (1096)
+++|+.|++++|..++...-.. .-++|+.|.+.+|..+++. .+......+++|++|+|++|..+.+-.-
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~--------gl~~i~~~~~~L~~L~l~~c~~~~d~~l 313 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDE--------GLVSIAERCPSLRELDLSGCHGLTDSGL 313 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchh--------HHHHHHHhcCcccEEeeecCccchHHHH
Confidence 4555555555554433221100 0135555555555554331 1112344566677777777765522110
Q ss_pred ccccCcCCCCccEEEecc---CCCCcccCcCCCCCCC--CcCeEeeccCCCCCCCCCCCcc-cccc-ceeeccCcch
Q 043647 1016 EEIGMTFPSSLTELVIVR---FPKLKYLSSNGFRNLA--FLEYLQIRDCPKLTSFPEAGLP-SSLL-ELYINDYPLM 1085 (1096)
Q Consensus 1016 ~~~~~~~~~sL~~L~l~~---c~~l~~l~~~~l~~l~--~L~~L~l~~c~~l~~l~~~~l~-~~L~-~L~i~~c~~L 1085 (1096)
... ...+++|+.|.+.. |+.++.+....+.... .+..+.+.+|++++.+.-.... .... .+.+.+||.|
T Consensus 314 ~~~-~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 314 EAL-LKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HHH-HHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 000 12244444444333 3344444322222222 5677777777777765432221 2222 6788899988
No 209
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.52 E-value=0.078 Score=58.36 Aligned_cols=177 Identities=11% Similarity=0.042 Sum_probs=99.0
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccC---c-----EEEEEecCccChHHHHHHHHH
Q 043647 186 DKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFN---L-----RSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~---~-----~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.-+++...+..+ .-...+.+.|+.|+||+++|..++...--. ..+ | .-++..+..+|...+
T Consensus 10 ~~~~l~~~~~~~----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (334)
T PRK07993 10 DYEQLVGSYQAG----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL------ 79 (334)
T ss_pred HHHHHHHHHHcC----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE------
Confidence 345566666432 235678899999999999998766532111 000 0 001111111111100
Q ss_pred hccCCCC-CCCcHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchh-hhhhc-C
Q 043647 257 SITFSPN-SLKDLNQIQVQLREA----VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTD-VALTV-G 329 (1096)
Q Consensus 257 ~l~~~~~-~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~-~ 329 (1096)
..... ..-..+++.+..+.. ..+++-++|+|+++.-+......+...+..-..++.+|++|.+.+ +...+ .
T Consensus 80 --~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 80 --TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred --ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 00000 112234433322221 246777999999987777777777777765555677777766543 33222 2
Q ss_pred CcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHH
Q 043647 330 TAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAE 383 (1096)
Q Consensus 330 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 383 (1096)
....+.+.+++.+++.+.+.... + ...+.+..++..++|.|..+.
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~-~--------~~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 158 RCRLHYLAPPPEQYALTWLSREV-T--------MSQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccccccCCCCCHHHHHHHHHHcc-C--------CCHHHHHHHHHHcCCCHHHHH
Confidence 23568899999999888775432 1 112335678999999996443
No 210
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.50 E-value=0.029 Score=57.11 Aligned_cols=225 Identities=14% Similarity=0.212 Sum_probs=121.4
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccc----c-ccCcEEEEEecCc----------
Q 043647 180 VFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAV----E-MFNLRSWVCVSDD---------- 244 (1096)
Q Consensus 180 ~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~-~f~~~~wv~~~~~---------- 244 (1096)
+.++++....+..... .++.+-..++|+.|.||-|.+..+.++... + .-+.+.|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~-----~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~ 89 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS-----TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSN 89 (351)
T ss_pred cccHHHHHHHHHHhcc-----cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEeccc
Confidence 5566666666666542 234778999999999999988666654321 2 3445556544332
Q ss_pred c-----------ChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCC-CcE-EEEEecCCCCChhhHHHhhcccCCCCC
Q 043647 245 F-----------DILRITKSILESITFSPNSLKDLNQIQVQLREAVAG-KRF-LIVLDDVWSKNYSLWNTLKSPFRAGAS 311 (1096)
Q Consensus 245 ~-----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~ 311 (1096)
+ ..+-+.++++.+...... + ..++ +.| ++|+-.+++-..++...+......-.+
T Consensus 90 yHlEitPSDaG~~DRvViQellKevAQt~q-----------i--e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 90 YHLEITPSDAGNYDRVVIQELLKEVAQTQQ-----------I--ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred ceEEeChhhcCcccHHHHHHHHHHHHhhcc-----------h--hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 1 122233333333221110 0 0112 233 566777765554555556655554455
Q ss_pred CcEEEEEcCch-hhhhhcC-CcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHHHHh
Q 043647 312 GSKILVTTCST-DVALTVG-TAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGGLL 389 (1096)
Q Consensus 312 gs~iivTtR~~-~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 389 (1096)
.+|+|+.--+. .+...+. ..-.+++...+++|-...+.+.+-..+ . .-..+++.+|+++++|.---...+-..+
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~-l---~lp~~~l~rIa~kS~~nLRrAllmlE~~ 232 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEG-L---QLPKELLKRIAEKSNRNLRRALLMLEAV 232 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhc-c---cCcHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 67777653221 1111111 123588999999999998888773322 1 2237899999999998753333333222
Q ss_pred ccCC----------CHHHHHHHHhhhcccccc---CCChHHHHHHHHhcC
Q 043647 390 RCKQ----------SDDEWDEILNSKIWYLSE---ESNILPVLRLSYHHL 426 (1096)
Q Consensus 390 ~~~~----------~~~~w~~~~~~~~~~~~~---~~~i~~~l~~sy~~L 426 (1096)
+-+. ...+|+..........-. ...+.++-..=|+-|
T Consensus 233 ~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 233 RVNNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred HhccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 2111 245798777654333222 234445544555544
No 211
>PRK06921 hypothetical protein; Provisional
Probab=96.49 E-value=0.0095 Score=63.29 Aligned_cols=38 Identities=21% Similarity=0.160 Sum_probs=28.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEe
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCV 241 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~ 241 (1096)
...+.++|..|+|||+||.++++....+.-..+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 45789999999999999999998654331334566654
No 212
>PRK09183 transposase/IS protein; Provisional
Probab=96.49 E-value=0.0047 Score=65.47 Aligned_cols=100 Identities=17% Similarity=0.145 Sum_probs=51.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcE
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKRF 284 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 284 (1096)
..+.|+|++|+|||+||.++........+ .+.+++ ..++...+...... .. +...+++.+ .+.-
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~-~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~~d 166 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGI-KVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRGV-MAPR 166 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCC-eEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHHh-cCCC
Confidence 46789999999999999998764322222 233333 22333333221110 01 122233322 3456
Q ss_pred EEEEecCCCCChhhHH--HhhcccCC-CCCCcEEEEEcCc
Q 043647 285 LIVLDDVWSKNYSLWN--TLKSPFRA-GASGSKILVTTCS 321 (1096)
Q Consensus 285 LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~iivTtR~ 321 (1096)
++|+||+.......+. .+...+.. ...++ +||||..
T Consensus 167 lLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 167 LLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred EEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 9999999754333232 23222211 12344 7888854
No 213
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.46 E-value=0.017 Score=65.96 Aligned_cols=188 Identities=16% Similarity=0.180 Sum_probs=109.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
++++|.+.-+..|...+.... -..-....|+-|+||||+|+.++.-.-.. -| ....+++.-...+.|...
T Consensus 16 ~evvGQe~v~~~L~nal~~~r----i~hAYlfsG~RGvGKTt~Ari~AkalNC~-----~~-~~~ePC~~C~~Ck~I~~g 85 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR----IAHAYLFSGPRGVGKTTIARILAKALNCE-----NG-PTAEPCGKCISCKEINEG 85 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc----chhhhhhcCCCCcCchhHHHHHHHHhcCC-----CC-CCCCcchhhhhhHhhhcC
Confidence 357999999999999886542 23456689999999999998887632211 11 111222222333333322
Q ss_pred --ccC---CCCCCCcHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchh-hhhh
Q 043647 258 --ITF---SPNSLKDLNQIQVQLREA----VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTD-VALT 327 (1096)
Q Consensus 258 --l~~---~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~ 327 (1096)
+.. ...+...+++....+.+. .+++-=..|+|.|.-.....|..+...+-.-...-+.|..|.+.+ +..-
T Consensus 86 ~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 86 SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 000 001112233332222222 246666889999977666788888777755445556566565543 3221
Q ss_pred -cCCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCc
Q 043647 328 -VGTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLP 379 (1096)
Q Consensus 328 -~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 379 (1096)
......|.++.++.++-...+...+-... . ....+....|++..+|..
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~-I---~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEG-I---NIEEDALSLIARAAEGSL 214 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcC-C---ccCHHHHHHHHHHcCCCh
Confidence 23346799999999988888777663222 1 223445566777777754
No 214
>PRK04296 thymidine kinase; Provisional
Probab=96.44 E-value=0.0063 Score=61.32 Aligned_cols=114 Identities=15% Similarity=0.016 Sum_probs=63.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCC--CCcHHHHHHHHHHHhCCC
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNS--LKDLNQIQVQLREAVAGK 282 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~k 282 (1096)
.++.|+|..|.||||+|........... ..++.+. ..++.......++.+++..... ....+++...+++ ..++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g-~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~ 78 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERG-MKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEK 78 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcC-CeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCC
Confidence 4788999999999999988776543221 2223231 1112222233455555432211 2234445555554 3345
Q ss_pred cEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchhh
Q 043647 283 RFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTDV 324 (1096)
Q Consensus 283 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 324 (1096)
.-+||+|.+.--+.++...+...+. ..|..||+|.++.+.
T Consensus 79 ~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 79 IDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTDF 118 (190)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCccc
Confidence 5689999995432232333333322 357889999887543
No 215
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0076 Score=71.67 Aligned_cols=125 Identities=22% Similarity=0.303 Sum_probs=76.1
Q ss_pred CccccchHHHHHHHHHHhcCCC----CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEP----TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKS 253 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 253 (1096)
..++|.++.+..+.+.+..... +.....+....|+.|||||-||++++...... -+..+-++.|.-.... .
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~-e~aliR~DMSEy~EkH----s 565 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD-EQALIRIDMSEYMEKH----S 565 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC-CccceeechHHHHHHH----H
Confidence 4689999999999988864322 33456788889999999999998888643110 0223333333221111 1
Q ss_pred HHHhccCCCCCCCcHHHHHHHHHHHhCCCcE-EEEEecCCCCChhhHHHhhcccCCC
Q 043647 254 ILESITFSPNSLKDLNQIQVQLREAVAGKRF-LIVLDDVWSKNYSLWNTLKSPFRAG 309 (1096)
Q Consensus 254 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~ 309 (1096)
+ ..+-+.+..--..++ .-.+-+..+.++| +|.||++...+.+..+-+...|.++
T Consensus 566 V-SrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 566 V-SRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred H-HHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 2 222223221111111 2235555667877 8889999888877788887777654
No 216
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.42 E-value=0.0031 Score=68.44 Aligned_cols=50 Identities=16% Similarity=0.289 Sum_probs=41.4
Q ss_pred ccccchHHHHHHHHHHhcCCCC-CCCceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 179 AVFGRDEDKAKILEMVLRDEPT-DANFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
+++|.++.++++++++.....+ ....+++.++|++|+||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999999654321 2346889999999999999999998764
No 217
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.41 E-value=0.064 Score=59.77 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=33.8
Q ss_pred chHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccc
Q 043647 183 RDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKA 229 (1096)
Q Consensus 183 r~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 229 (1096)
|+.-.+.+.+.+..... ....+|+|.|.-|+||||+.+.+.+...
T Consensus 1 ~~~~a~~la~~I~~~~~--~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDS--DDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred ChHHHHHHHHHHhccCC--CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34456677777765421 4578999999999999999988877543
No 218
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.36 E-value=0.016 Score=72.46 Aligned_cols=122 Identities=20% Similarity=0.241 Sum_probs=69.3
Q ss_pred CccccchHHHHHHHHHHhcCCC----CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEP----TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKS 253 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 253 (1096)
..++|.++.++.+.+.+..... .+....++.++|+.|+|||+||+.+.+..... -...+-+..+.-.+...+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~-~~~~~~~d~s~~~~~~~~~~- 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS-EDAMIRLDMSEYMEKHTVSK- 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC-ccceEEEEchhccccccHHH-
Confidence 4688999999999888753211 22234567799999999999999888643211 11223333333222111111
Q ss_pred HHHhccCCCC--CCCcHHHHHHHHHHHhCCCc-EEEEEecCCCCChhhHHHhhcccCC
Q 043647 254 ILESITFSPN--SLKDLNQIQVQLREAVAGKR-FLIVLDDVWSKNYSLWNTLKSPFRA 308 (1096)
Q Consensus 254 i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~ 308 (1096)
-++..+. +..+... +.+.++.++ .+++||+++..+...++.+...+..
T Consensus 587 ---l~g~~~gyvg~~~~~~----l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~ 637 (821)
T CHL00095 587 ---LIGSPPGYVGYNEGGQ----LTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDD 637 (821)
T ss_pred ---hcCCCCcccCcCccch----HHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhcc
Confidence 1121111 1111122 334444444 5899999988877778777766654
No 219
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.011 Score=65.32 Aligned_cols=53 Identities=30% Similarity=0.347 Sum_probs=39.9
Q ss_pred ccccchH---HHHHHHHHHhcCCC----CCCCceEEEEEcCCCCcHHHHHHHHhcccccc
Q 043647 179 AVFGRDE---DKAKILEMVLRDEP----TDANFSLIPIVGMAGVGKTTLARVAFDDKAVE 231 (1096)
Q Consensus 179 ~~vgr~~---~~~~l~~~L~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 231 (1096)
++-|-|+ |+++|+++|.++.. +..-++=|.++|++|.|||-||++|+-+..+-
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP 364 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP 364 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC
Confidence 4556654 67778888865532 33446778999999999999999999876654
No 220
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.32 E-value=0.011 Score=67.96 Aligned_cols=86 Identities=17% Similarity=0.185 Sum_probs=59.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCC
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAG 281 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 281 (1096)
...++..++|++|+||||||..+++.. .| .++=|++|+.-+...+-..|...+........ .+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa---GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a-------------ds 386 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA---GY-SVVEINASDERTAPMVKEKIENAVQNHSVLDA-------------DS 386 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc---Cc-eEEEecccccccHHHHHHHHHHHHhhcccccc-------------CC
Confidence 457899999999999999998888743 22 36678888887777777777666553322111 26
Q ss_pred CcEEEEEecCCCCChhhHHHhhc
Q 043647 282 KRFLIVLDDVWSKNYSLWNTLKS 304 (1096)
Q Consensus 282 kr~LlVlDdv~~~~~~~~~~l~~ 304 (1096)
++.-+|+|.++.......+.+..
T Consensus 387 rP~CLViDEIDGa~~~~Vdvils 409 (877)
T KOG1969|consen 387 RPVCLVIDEIDGAPRAAVDVILS 409 (877)
T ss_pred CcceEEEecccCCcHHHHHHHHH
Confidence 78889999997665333444433
No 221
>PRK12377 putative replication protein; Provisional
Probab=96.32 E-value=0.0066 Score=63.34 Aligned_cols=101 Identities=19% Similarity=0.093 Sum_probs=55.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKR 283 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 283 (1096)
...+.|+|..|+|||+||.++.+....+ ...++++++. ++...+-..... ..... .+.+.+ .+-
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~-g~~v~~i~~~------~l~~~l~~~~~~----~~~~~----~~l~~l-~~~ 164 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK-GRSVIVVTVP------DVMSRLHESYDN----GQSGE----KFLQEL-CKV 164 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEEEHH------HHHHHHHHHHhc----cchHH----HHHHHh-cCC
Confidence 3578999999999999999999865432 2335666543 344444333221 11111 122222 356
Q ss_pred EEEEEecCCCCChhhHHH--hhcccCCC-CCCcEEEEEcC
Q 043647 284 FLIVLDDVWSKNYSLWNT--LKSPFRAG-ASGSKILVTTC 320 (1096)
Q Consensus 284 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtR 320 (1096)
=||||||+.......|.. +...+... .+.--+||||-
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 689999995543344442 22222221 22334677775
No 222
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.28 E-value=0.031 Score=64.52 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=81.2
Q ss_pred ccccchHHHHHHHHHHh--cC---CCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHH
Q 043647 179 AVFGRDEDKAKILEMVL--RD---EPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKS 253 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~--~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 253 (1096)
++.|.+..++.+.+... .. ..+-...+-|.++|++|+|||.+|+++++...... +-+.++ .
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~------~---- 294 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVG------K---- 294 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhH------H----
Confidence 46676665555543211 00 01113456789999999999999999998643321 111111 1
Q ss_pred HHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCCh--------hh----HHHhhcccCCCCCCcEEEEEcCc
Q 043647 254 ILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNY--------SL----WNTLKSPFRAGASGSKILVTTCS 321 (1096)
Q Consensus 254 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------~~----~~~l~~~l~~~~~gs~iivTtR~ 321 (1096)
+..... ..+...+...+...-...+++|++|+++.... .. ...+...+.....+--||.||..
T Consensus 295 l~~~~v-----Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~ 369 (489)
T CHL00195 295 LFGGIV-----GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANN 369 (489)
T ss_pred hccccc-----ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCC
Confidence 111100 01112222233333345789999999963200 00 11122222222334456667765
Q ss_pred hhhh-hhc----CCcceeeCCCCChHhHHHHHHHhhcC
Q 043647 322 TDVA-LTV----GTAEYYNLKLLSDDDCWSVFVKHAFE 354 (1096)
Q Consensus 322 ~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~ 354 (1096)
.+.. ..+ .-...+.++.-+.++-.++|..+..+
T Consensus 370 ~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 370 IDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred hhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 5321 111 22356788888999999999887743
No 223
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.27 E-value=0.042 Score=60.22 Aligned_cols=89 Identities=16% Similarity=0.144 Sum_probs=48.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccC--hHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhC
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFD--ILRITKSILESITFSPNSLKDLNQIQVQLREAVA 280 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 280 (1096)
+.++|+++|++|+||||++..++.....+.+ .+..+... .+. ..+-++..++..+..-....+.+.+...+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~Gk-kVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKK-TVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCC-cEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 4589999999999999999888764332222 34444432 222 2222333333444332223345555555544322
Q ss_pred C-CcEEEEEecCCC
Q 043647 281 G-KRFLIVLDDVWS 293 (1096)
Q Consensus 281 ~-kr~LlVlDdv~~ 293 (1096)
. +.=+|++|-.-.
T Consensus 318 ~~~~DvVLIDTaGR 331 (436)
T PRK11889 318 EARVDYILIDTAGK 331 (436)
T ss_pred ccCCCEEEEeCccc
Confidence 1 234677787644
No 224
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.24 E-value=0.029 Score=62.58 Aligned_cols=125 Identities=18% Similarity=0.158 Sum_probs=73.7
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccc--------------------cCcEEE
Q 043647 179 AVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEM--------------------FNLRSW 238 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------f~~~~w 238 (1096)
.++|-+....++..+..... .....+.++|++|+||||+|.++.+...... +.-+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~---~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~le 78 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG---RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLE 78 (325)
T ss_pred CcccchhHHHHHHHHHHhcC---CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEE
Confidence 46777888888888886432 1233599999999999999988887543210 112222
Q ss_pred EEecCccC---hHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEE
Q 043647 239 VCVSDDFD---ILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKI 315 (1096)
Q Consensus 239 v~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 315 (1096)
+..+.... ..+..+++.+...... ..++.-++++|+++..+.+.-..+...+......+.+
T Consensus 79 l~~s~~~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~ 142 (325)
T COG0470 79 LNPSDLRKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRF 142 (325)
T ss_pred ecccccCCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEE
Confidence 22222222 1112222222111110 0366789999999776655566666666555567788
Q ss_pred EEEcCch
Q 043647 316 LVTTCST 322 (1096)
Q Consensus 316 ivTtR~~ 322 (1096)
|++|...
T Consensus 143 il~~n~~ 149 (325)
T COG0470 143 ILITNDP 149 (325)
T ss_pred EEEcCCh
Confidence 8888743
No 225
>PRK04132 replication factor C small subunit; Provisional
Probab=96.24 E-value=0.084 Score=64.53 Aligned_cols=155 Identities=12% Similarity=0.044 Sum_probs=93.5
Q ss_pred CCCCcHHHHHHHHhcccccccc-CcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEec
Q 043647 212 MAGVGKTTLARVAFDDKAVEMF-NLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDD 290 (1096)
Q Consensus 212 ~gGiGKTtLa~~v~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd 290 (1096)
|-++||||+|.+++++.....+ ..++-+++++..+...+ ++++..+..... .-..+.-++|+|+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~--------------~~~~~~KVvIIDE 638 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINVI-REKVKEFARTKP--------------IGGASFKIIFLDE 638 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCC--------------cCCCCCEEEEEEC
Confidence 6689999999999986422211 13555666654444322 233222211000 0012457999999
Q ss_pred CCCCChhhHHHhhcccCCCCCCcEEEEEcCch-hhhhhc-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHH
Q 043647 291 VWSKNYSLWNTLKSPFRAGASGSKILVTTCST-DVALTV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIR 368 (1096)
Q Consensus 291 v~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~ 368 (1096)
++.-+..+.+.+...+......+++|.+|.+. .+...+ .....+.+.+++.++-...+...+-..+ .. -..+..
T Consensus 639 aD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg-i~---i~~e~L 714 (846)
T PRK04132 639 ADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-LE---LTEEGL 714 (846)
T ss_pred cccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC-CC---CCHHHH
Confidence 98887777788877776544566666665544 332222 2236799999999988887776653211 11 124567
Q ss_pred HHHHHHhCCCchhHHHH
Q 043647 369 KKVVQKCRGLPLAAETL 385 (1096)
Q Consensus 369 ~~i~~~~~g~PLai~~~ 385 (1096)
..|++.++|.+-.+..+
T Consensus 715 ~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 715 QAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHcCCCHHHHHHH
Confidence 88999999988554433
No 226
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.062 Score=63.72 Aligned_cols=180 Identities=19% Similarity=0.165 Sum_probs=101.6
Q ss_pred CccccchH---HHHHHHHHHhcCCC----CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHH
Q 043647 178 PAVFGRDE---DKAKILEMVLRDEP----TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 178 ~~~vgr~~---~~~~l~~~L~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 250 (1096)
.++.|-++ |+++++++|..++. +..-++=+.++|++|.|||-||++++-+..+- |++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP------F~svSGS------ 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------FFSVSGS------ 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc------eeeechH------
Confidence 35677765 45556667755421 23446778899999999999999999876553 3334322
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHH-HHHhCCCcEEEEEecCCCCC---------------hhhHHHhhcccCCCCCCc-
Q 043647 251 TKSILESITFSPNSLKDLNQIQVQL-REAVAGKRFLIVLDDVWSKN---------------YSLWNTLKSPFRAGASGS- 313 (1096)
Q Consensus 251 ~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~~~---------------~~~~~~l~~~l~~~~~gs- 313 (1096)
++.+.+.+.. ...++.+ ...=...+++|.+|+++... ...+.++...+.....+.
T Consensus 379 --EFvE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 379 --EFVEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred --HHHHHhcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 2222222111 1112222 22224567888888875310 112344444433333223
Q ss_pred -EEEEEcCchhhhhhc--C---CcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchh
Q 043647 314 -KILVTTCSTDVALTV--G---TAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLA 381 (1096)
Q Consensus 314 -~iivTtR~~~v~~~~--~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 381 (1096)
-+|-+|...++.... . -++.+.++.-+.....++|..++-... ...+..++++ |+...-|.+=|
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~---~~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK---LDDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccC---CCcchhhHHH-HHhcCCCCcHH
Confidence 344456555554321 1 235678888888889999998883322 2245566666 88888887744
No 227
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.23 E-value=0.011 Score=71.82 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=67.5
Q ss_pred ccccchHHHHHHHHHHhcCCC----CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHH
Q 043647 179 AVFGRDEDKAKILEMVLRDEP----TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSI 254 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 254 (1096)
.++|.++.++.+.+.+..... .......+.++|+.|+|||++|+.++..... ..+.++++.-.+... +
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~----~~i~id~se~~~~~~----~ 530 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI----ELLRFDMSEYMERHT----V 530 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC----CcEEeechhhccccc----H
Confidence 478999999998888753211 1223467899999999999999988875421 223334333221111 1
Q ss_pred HHhccCCCCCCCcHHHHHHHHHHHhC-CCcEEEEEecCCCCChhhHHHhhcccCC
Q 043647 255 LESITFSPNSLKDLNQIQVQLREAVA-GKRFLIVLDDVWSKNYSLWNTLKSPFRA 308 (1096)
Q Consensus 255 ~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 308 (1096)
..-++.... -...+ ....+.+.++ ....+|+||+++....+.++.+...+..
T Consensus 531 ~~LiG~~~g-yvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~ 583 (758)
T PRK11034 531 SRLIGAPPG-YVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDN 583 (758)
T ss_pred HHHcCCCCC-ccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhc
Confidence 111222111 00000 0111222332 3456999999988777777777665543
No 228
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.21 E-value=0.0018 Score=65.20 Aligned_cols=195 Identities=21% Similarity=0.229 Sum_probs=110.7
Q ss_pred CCCcceEEEecccccc-----cCCCCcCCCCccceeeccccc-----------ccccccccccCCCCcEEeccCcccCcc
Q 043647 554 KFTKLRVLSLKKYYIT-----ELPHSIGDLKHLRYINLSETM-----------IRCLPESICSLCNLQFLILRGCYRLKK 617 (1096)
Q Consensus 554 ~~~~Lr~L~L~~~~~~-----~lp~~i~~l~~Lr~L~L~~~~-----------i~~lp~~i~~L~~L~~L~L~~~~~l~~ 617 (1096)
.+..+..++||+|.|. .+...|.+-.+|+..+++.-. +..+-+.+-++++|+..+||.|..-..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 4778889999999875 355666777889998888531 222334556889999999999765555
Q ss_pred cCcc----ccCCCCCceEEeccccccccCc-ccCCCCCCCCcCCceEecccCCCCcccccccccccceEEE-eecCCCCC
Q 043647 618 LPSN----LRNLINLRHLVVTYVDLIREMP-LGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCI-SRLDYFDD 691 (1096)
Q Consensus 618 lp~~----i~~l~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i-~~l~~~~~ 691 (1096)
.|+. |++-+.|.||.+++|. +..+. ..|++ .|++|.... .-.+-+.|+...|- +.++.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigk--al~~la~nK----------Kaa~kp~Le~vicgrNRlen--- 171 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGK--ALFHLAYNK----------KAADKPKLEVVICGRNRLEN--- 171 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC-CCccchhHHHH--HHHHHHHHh----------hhccCCCceEEEeccchhcc---
Confidence 5543 5677999999999887 33221 11321 233332100 00011111100000 00000
Q ss_pred CcchHHHHHHhhccCCCCCCCeEEEeeeCCCCCC----cccCCccccceeEEeecCCCCCCC----CC-CCCCcCCccee
Q 043647 692 SRNEALEKNVLDMLQPHRSLKELTVKCYGGTVFP----SWMGDPLFSNIVLLRLEDCEKCTS----LP-SLGLLGSLKNL 762 (1096)
Q Consensus 692 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p----~~~~~~~~~~L~~L~L~~~~~~~~----l~-~l~~l~~L~~L 762 (1096)
. ........+..+.+|+.+.+..|++.--. ...+...+.+|+.|+|.+|.+... +. .+...+.|+.|
T Consensus 172 g----s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 172 G----SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred C----cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 0 00112234556678999999888754210 111223468899999998864321 11 23445678888
Q ss_pred eccccc
Q 043647 763 TIKGMR 768 (1096)
Q Consensus 763 ~L~~~~ 768 (1096)
.+.+|-
T Consensus 248 ~lnDCl 253 (388)
T COG5238 248 RLNDCL 253 (388)
T ss_pred cccchh
Confidence 888873
No 229
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.20 E-value=0.033 Score=58.42 Aligned_cols=171 Identities=19% Similarity=0.162 Sum_probs=90.0
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccccc-CcEEEEEecCccC-hHHHHHHHHH
Q 043647 179 AVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMF-NLRSWVCVSDDFD-ILRITKSILE 256 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f-~~~~wv~~~~~~~-~~~~~~~i~~ 256 (1096)
.++|-.++..++-.++...-. .++..-+.|+|+.|.|||+|...+..+ .+.+ +..+-|....... .+-.++.|.+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~-~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL-HGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH-hcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 477888888888777743211 112345789999999999999777776 2222 2333344433322 1223444444
Q ss_pred hcc----CCCCCCCcHHHHHHHHHHHhC------CCcEEEEEecCCCCChhhHHHhhccc-----CCCCCCcEEEEEcCc
Q 043647 257 SIT----FSPNSLKDLNQIQVQLREAVA------GKRFLIVLDDVWSKNYSLWNTLKSPF-----RAGASGSKILVTTCS 321 (1096)
Q Consensus 257 ~l~----~~~~~~~~~~~~~~~l~~~l~------~kr~LlVlDdv~~~~~~~~~~l~~~l-----~~~~~gs~iivTtR~ 321 (1096)
|+. .......+..+....+-+.|+ +-++++|+|..+-.-...-+.+...+ ....+-+-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 443 222222233333334444442 34688888887543111111111111 113345678899985
Q ss_pred hh-------hhhhcCCcceeeCCCCChHhHHHHHHHhh
Q 043647 322 TD-------VALTVGTAEYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 322 ~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 352 (1096)
.- |-..+.-..++-++.++-++...++++..
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 32 22222222355666777777777776655
No 230
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.18 E-value=0.018 Score=60.46 Aligned_cols=88 Identities=20% Similarity=0.188 Sum_probs=55.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCcc-ChHHHHHHHHHhccCC-------CCCCCcHH-----H
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDF-DILRITKSILESITFS-------PNSLKDLN-----Q 270 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~-----~ 270 (1096)
-.-++|+|..|+||||||+.+++....++-+.++++-+++.. ++.++.+++...=... ..+..-.. .
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~ 148 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVAL 148 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 356899999999999999999987554333556677776654 4556666665431111 01111111 1
Q ss_pred HHHHHHHHh--C-CCcEEEEEecC
Q 043647 271 IQVQLREAV--A-GKRFLIVLDDV 291 (1096)
Q Consensus 271 ~~~~l~~~l--~-~kr~LlVlDdv 291 (1096)
....+.+++ + ++.+|+++||+
T Consensus 149 ~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 149 TGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHhcCCeEEEEEeCh
Confidence 122345555 3 89999999998
No 231
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.17 E-value=0.042 Score=68.16 Aligned_cols=178 Identities=16% Similarity=0.154 Sum_probs=91.7
Q ss_pred ccccchHHHHHHHHHHhcCC--------CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHH
Q 043647 179 AVFGRDEDKAKILEMVLRDE--------PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~--------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 250 (1096)
++.|.++.++++.+++...- -+-...+-|.++|++|+|||++|+++++.... . ++.++.. ++
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~-~-----~i~i~~~----~i 248 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA-Y-----FISINGP----EI 248 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC-e-----EEEEecH----HH
Confidence 47899999988877763210 01123456889999999999999999875322 1 1222211 11
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCC-----------hhhHHHhhcccCCC-CCCcEEEE-
Q 043647 251 TKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKN-----------YSLWNTLKSPFRAG-ASGSKILV- 317 (1096)
Q Consensus 251 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~-~~gs~iiv- 317 (1096)
..... ......+...+.........+|+||+++... ......+...+... ..+..++|
T Consensus 249 ----~~~~~-----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~ 319 (733)
T TIGR01243 249 ----MSKYY-----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIG 319 (733)
T ss_pred ----hcccc-----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEe
Confidence 11100 0112223333344445667899999985321 01122333333221 22334444
Q ss_pred EcCchh-hhhhcC----CcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCch
Q 043647 318 TTCSTD-VALTVG----TAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPL 380 (1096)
Q Consensus 318 TtR~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL 380 (1096)
||.... +...+. -...+.+...+.++-.+++..+.-+ ..... ......+++.+.|.--
T Consensus 320 atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~-~~l~~----d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 320 ATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN-MPLAE----DVDLDKLAEVTHGFVG 382 (733)
T ss_pred ecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC-CCCcc----ccCHHHHHHhCCCCCH
Confidence 454332 111111 1245777778888888888755411 11111 1124567778877653
No 232
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.17 E-value=0.012 Score=62.38 Aligned_cols=133 Identities=21% Similarity=0.307 Sum_probs=72.0
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccc--cccCcEEE----EEecCcc--------
Q 043647 180 VFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAV--EMFNLRSW----VCVSDDF-------- 245 (1096)
Q Consensus 180 ~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~f~~~~w----v~~~~~~-------- 245 (1096)
+-+|..+..-.+++|+.+ ++..|.+.|.+|.|||.||.+..-.... +.|..++- +.++++.
T Consensus 226 i~prn~eQ~~ALdlLld~-----dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eE 300 (436)
T COG1875 226 IRPRNAEQRVALDLLLDD-----DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEE 300 (436)
T ss_pred cCcccHHHHHHHHHhcCC-----CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchh
Confidence 345677777778888654 4789999999999999999554432211 13433221 2222221
Q ss_pred -ChHHHHHHHHHhc---cCCCCCCCcHHHHHHHH---------HHHhCCC---cEEEEEecCCCCChhhHHHhhcccCCC
Q 043647 246 -DILRITKSILESI---TFSPNSLKDLNQIQVQL---------REAVAGK---RFLIVLDDVWSKNYSLWNTLKSPFRAG 309 (1096)
Q Consensus 246 -~~~~~~~~i~~~l---~~~~~~~~~~~~~~~~l---------~~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~ 309 (1096)
.+.-..+.|..-+ ...... ....+...+ -.+++|+ .-+||+|.+.+-...+...+ +...
T Consensus 301 eKm~PWmq~i~DnLE~L~~~~~~--~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi---ltR~ 375 (436)
T COG1875 301 EKMGPWMQAIFDNLEVLFSPNEP--GDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI---LTRA 375 (436)
T ss_pred hhccchHHHHHhHHHHHhccccc--chHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH---HHhc
Confidence 1112222222222 111111 111111111 1123454 56999999988766555555 4456
Q ss_pred CCCcEEEEEcCch
Q 043647 310 ASGSKILVTTCST 322 (1096)
Q Consensus 310 ~~gs~iivTtR~~ 322 (1096)
+.||||+.|---.
T Consensus 376 G~GsKIVl~gd~a 388 (436)
T COG1875 376 GEGSKIVLTGDPA 388 (436)
T ss_pred cCCCEEEEcCCHH
Confidence 7899999886433
No 233
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.16 E-value=0.046 Score=52.24 Aligned_cols=105 Identities=14% Similarity=0.159 Sum_probs=56.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcE
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKRF 284 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 284 (1096)
.+++|+|..|.|||||++.+...... ....+|+.-. ..+..... ...-+...-.+...+..++-
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~~~-------------~~i~~~~~-lS~G~~~rv~laral~~~p~ 90 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEP--DEGIVTWGST-------------VKIGYFEQ-LSGGEKMRLALAKLLLENPN 90 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCe-------------EEEEEEcc-CCHHHHHHHHHHHHHhcCCC
Confidence 58999999999999999999875432 1222332110 00000000 11112222334555556777
Q ss_pred EEEEecCCCC-ChhhHHHhhcccCCCCCCcEEEEEcCchhhhhh
Q 043647 285 LIVLDDVWSK-NYSLWNTLKSPFRAGASGSKILVTTCSTDVALT 327 (1096)
Q Consensus 285 LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 327 (1096)
++++|+.-.. +....+.+...+... +..||++|.+.+....
T Consensus 91 illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 91 LLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 8899987532 233344444444332 2468888887665543
No 234
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.15 E-value=0.12 Score=56.66 Aligned_cols=94 Identities=18% Similarity=0.261 Sum_probs=63.5
Q ss_pred CCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchh-hhhhc-CCcceeeCCCCChHhHHHHHHHhhcCCCC
Q 043647 280 AGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTD-VALTV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRD 357 (1096)
Q Consensus 280 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 357 (1096)
.+++-++|+|+++.-+...+..+...+..-..++.+|++|.+.+ +...+ .....+.+.+++.++..+.+....
T Consensus 130 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----- 204 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----- 204 (342)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC-----
Confidence 35666889999988888888888888776556776666665543 33222 223678999999999998886542
Q ss_pred CCCCcchhHHHHHHHHHhCCCchhHHHH
Q 043647 358 VGLHRHMGSIRKKVVQKCRGLPLAAETL 385 (1096)
Q Consensus 358 ~~~~~~~~~~~~~i~~~~~g~PLai~~~ 385 (1096)
.. + ...++..++|.|..+..+
T Consensus 205 ~~--~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 205 VA--D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred CC--h-----HHHHHHHcCCCHHHHHHH
Confidence 11 1 123577889999755444
No 235
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.10 E-value=0.0092 Score=65.18 Aligned_cols=102 Identities=15% Similarity=0.127 Sum_probs=54.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcE
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKRF 284 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 284 (1096)
..+.++|..|+|||.||.++++....+.+ .++++++ .++...+...-. . ...+... . .+.+.+ -=
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~-~V~y~t~------~~l~~~l~~~~~-~--~~~~~~~---~-~~~l~~-~D 248 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGK-SVIYRTA------DELIEILREIRF-N--NDKELEE---V-YDLLIN-CD 248 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCC-eEEEEEH------HHHHHHHHHHHh-c--cchhHHH---H-HHHhcc-CC
Confidence 56999999999999999999986543332 4556543 233333332111 1 0111111 1 222222 24
Q ss_pred EEEEecCCCCChhhHHH--hhcccCC-CCCCcEEEEEcCc
Q 043647 285 LIVLDDVWSKNYSLWNT--LKSPFRA-GASGSKILVTTCS 321 (1096)
Q Consensus 285 LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtR~ 321 (1096)
||||||+.......|.. +...+.. ...+-.+||||..
T Consensus 249 LLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 249 LLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred EEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999996654344432 2222221 1234568888864
No 236
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.10 E-value=0.059 Score=59.05 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=45.0
Q ss_pred CCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchh-hhhhc-CCcceeeCCCCChHhHHHHHHH
Q 043647 281 GKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTD-VALTV-GTAEYYNLKLLSDDDCWSVFVK 350 (1096)
Q Consensus 281 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~ 350 (1096)
+++-++|+|++..-+...-..+...+.....++.+|++|.+.+ +...+ .....+.+.+++.+++.+.+..
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHh
Confidence 4455566788877666666666655544344566777777654 32221 2235788999999999887754
No 237
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.09 E-value=0.0039 Score=57.77 Aligned_cols=22 Identities=41% Similarity=0.549 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
+|.|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 238
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.08 E-value=0.0099 Score=62.63 Aligned_cols=81 Identities=17% Similarity=0.171 Sum_probs=49.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKR 283 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 283 (1096)
..-+.++|.+|+|||.||.++.++.. +.--.+.+++ ..++.+++...... ......+.+.+ .+-
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~------~~el~~~Lk~~~~~--------~~~~~~l~~~l-~~~ 168 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFIT------APDLLSKLKAAFDE--------GRLEEKLLREL-KKV 168 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEE------HHHHHHHHHHHHhc--------CchHHHHHHHh-hcC
Confidence 45689999999999999999998765 3222355554 34555555544432 11122233322 223
Q ss_pred EEEEEecCCCCChhhHH
Q 043647 284 FLIVLDDVWSKNYSLWN 300 (1096)
Q Consensus 284 ~LlVlDdv~~~~~~~~~ 300 (1096)
=||||||+.......|.
T Consensus 169 dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 169 DLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CEEEEecccCccCCHHH
Confidence 38899999776545544
No 239
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.08 E-value=0.018 Score=59.46 Aligned_cols=49 Identities=16% Similarity=0.159 Sum_probs=36.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHH
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITK 252 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 252 (1096)
..-.++.|+|++|+|||++|.++...... .-..++|++... ++..++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~-~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAAR-QGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCC-CCHHHHHH
Confidence 34589999999999999999887764322 345789998865 56555444
No 240
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.03 E-value=0.018 Score=60.20 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=34.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHH
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 250 (1096)
.-.++.|+|.+|+|||++|.+++..... .-..++|++.. .++..++
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~-~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAK-NGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEECC-CCCHHHH
Confidence 4579999999999999999888765332 34568899876 5555443
No 241
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.03 E-value=0.013 Score=61.01 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=56.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKR 283 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 283 (1096)
...+.++|.+|+|||+||.++++..... -..+++++ ..++...+-..... ...+.+ .+.+.+. +.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~-g~~v~~it------~~~l~~~l~~~~~~---~~~~~~----~~l~~l~-~~ 163 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLR-GKSVLIIT------VADIMSAMKDTFSN---SETSEE----QLLNDLS-NV 163 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEE------HHHHHHHHHHHHhh---ccccHH----HHHHHhc-cC
Confidence 3478999999999999999999865332 22345553 34444444433321 111111 2333344 34
Q ss_pred EEEEEecCCCCChhhHHH--hhcccCC-CCCCcEEEEEcCc
Q 043647 284 FLIVLDDVWSKNYSLWNT--LKSPFRA-GASGSKILVTTCS 321 (1096)
Q Consensus 284 ~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtR~ 321 (1096)
=+|||||+.......|+. +...+.. ....-.+||||-.
T Consensus 164 dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 164 DLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 488889997765555663 2222221 1123457777753
No 242
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.03 E-value=0.021 Score=56.98 Aligned_cols=36 Identities=31% Similarity=0.473 Sum_probs=27.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEE
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWV 239 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv 239 (1096)
...+|.+.|+.|+||||+|+.++..... .+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~-~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL-KYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcEEEE
Confidence 4569999999999999999999875432 33344444
No 243
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.03 E-value=0.0035 Score=59.82 Aligned_cols=88 Identities=23% Similarity=0.118 Sum_probs=47.9
Q ss_pred EEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEE
Q 043647 207 IPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLI 286 (1096)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~Ll 286 (1096)
|.++|++|+|||+||+.++..... ...-+.++...+..++....--. ... .. .....+...+ .+..++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~----~~~~i~~~~~~~~~dl~g~~~~~-~~~-~~-~~~~~l~~a~-----~~~~il 69 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR----PVIRINCSSDTTEEDLIGSYDPS-NGQ-FE-FKDGPLVRAM-----RKGGIL 69 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC----EEEEEE-TTTSTHHHHHCEEET--TTT-TC-EEE-CCCTTH-----HEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc----ceEEEEeccccccccceeeeeec-ccc-cc-cccccccccc-----cceeEE
Confidence 679999999999999999874311 23345667776766554332211 000 00 0000000001 178999
Q ss_pred EEecCCCCChhhHHHhhccc
Q 043647 287 VLDDVWSKNYSLWNTLKSPF 306 (1096)
Q Consensus 287 VlDdv~~~~~~~~~~l~~~l 306 (1096)
|||++...+...++.+...+
T Consensus 70 ~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 70 VLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EESSCGG--HHHHHTTHHHH
T ss_pred EECCcccCCHHHHHHHHHHH
Confidence 99999765555555554444
No 244
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.01 E-value=0.022 Score=57.44 Aligned_cols=88 Identities=18% Similarity=0.137 Sum_probs=50.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecC-ccChHHHHHHHHHhccCCCC---CCCcHHHHH-HHHHHH
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSD-DFDILRITKSILESITFSPN---SLKDLNQIQ-VQLREA 278 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~-~~l~~~ 278 (1096)
++||.++|+.|+||||.+..++.....+ -..+..|+... .....+-++..++.++..-. ...+..+.. +.+++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 3799999999999999998877655443 33466676542 23455666777777765421 122232322 333333
Q ss_pred hCCCcEEEEEecCC
Q 043647 279 VAGKRFLIVLDDVW 292 (1096)
Q Consensus 279 l~~kr~LlVlDdv~ 292 (1096)
-..+.=+|++|=.-
T Consensus 80 ~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 80 RKKGYDLVLIDTAG 93 (196)
T ss_dssp HHTTSSEEEEEE-S
T ss_pred hhcCCCEEEEecCC
Confidence 22233467777654
No 245
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.18 Score=56.12 Aligned_cols=148 Identities=18% Similarity=0.201 Sum_probs=84.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCC
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAG 281 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 281 (1096)
.....+.+.|++|+|||+||..++... .|..+--++.. ++ ++.. +......+.......-+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S---~FPFvKiiSpe---~m----------iG~s--EsaKc~~i~k~F~DAYkS 597 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSS---DFPFVKIISPE---DM----------IGLS--ESAKCAHIKKIFEDAYKS 597 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhc---CCCeEEEeChH---Hc----------cCcc--HHHHHHHHHHHHHHhhcC
Confidence 356678899999999999999888642 45544333211 10 0100 001112222333344466
Q ss_pred CcEEEEEecCCCCChhhHHHhhc---------------ccCCCCCCcEEEEEcCchhhhhhcCCc----ceeeCCCCCh-
Q 043647 282 KRFLIVLDDVWSKNYSLWNTLKS---------------PFRAGASGSKILVTTCSTDVALTVGTA----EYYNLKLLSD- 341 (1096)
Q Consensus 282 kr~LlVlDdv~~~~~~~~~~l~~---------------~l~~~~~gs~iivTtR~~~v~~~~~~~----~~~~l~~L~~- 341 (1096)
.--.||+||+..- .+|-.++. ..|+.++.--|+-||....+...|+.. ..|.++.++.
T Consensus 598 ~lsiivvDdiErL--iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~ 675 (744)
T KOG0741|consen 598 PLSIIVVDDIERL--LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTG 675 (744)
T ss_pred cceEEEEcchhhh--hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCch
Confidence 7789999999543 34433222 223333333456677778888887643 4688998887
Q ss_pred HhHHHHHHHhh-cCCCCCCCCcchhHHHHHHHHHh
Q 043647 342 DDCWSVFVKHA-FEKRDVGLHRHMGSIRKKVVQKC 375 (1096)
Q Consensus 342 ~~~~~lf~~~a-~~~~~~~~~~~~~~~~~~i~~~~ 375 (1096)
++..+.+...- |. +.+.+.++.+...+|
T Consensus 676 ~~~~~vl~~~n~fs------d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 676 EQLLEVLEELNIFS------DDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHHHHccCCC------cchhHHHHHHHhccc
Confidence 66777665432 22 234445555666555
No 246
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.95 E-value=0.046 Score=54.01 Aligned_cols=105 Identities=18% Similarity=0.128 Sum_probs=56.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcccccc----ccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhC
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVE----MFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVA 280 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 280 (1096)
.+++|+|+.|.|||||++.+..-.... .++..-...+.+... ...-+...-.+...+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~laral~ 87 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAAALL 87 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHHHHh
Confidence 589999999999999999988643221 222211001111111 1111222333455566
Q ss_pred CCcEEEEEecCCCC-ChhhHHHhhcccCCC-CC-CcEEEEEcCchhhhhh
Q 043647 281 GKRFLIVLDDVWSK-NYSLWNTLKSPFRAG-AS-GSKILVTTCSTDVALT 327 (1096)
Q Consensus 281 ~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~iivTtR~~~v~~~ 327 (1096)
.++-++++|+--.. +....+.+...+... .. +..||++|.+......
T Consensus 88 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 88 RNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 67788899987432 222233333333221 12 3567888877765543
No 247
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.95 E-value=0.04 Score=65.00 Aligned_cols=44 Identities=27% Similarity=0.445 Sum_probs=35.4
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 179 AVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
+++|.+..++.+...+... ...-+.|+|..|+|||++|+.+++.
T Consensus 66 ~iiGqs~~i~~l~~al~~~-----~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP-----NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999998876432 2345689999999999999999763
No 248
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.95 E-value=0.0035 Score=63.44 Aligned_cols=105 Identities=26% Similarity=0.307 Sum_probs=59.7
Q ss_pred CCCCcceEEEecccccccCCCCcCCCCccceeecccc--ccc-ccccccccCCCCcEEeccCcccCcc---cCccccCCC
Q 043647 553 PKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSET--MIR-CLPESICSLCNLQFLILRGCYRLKK---LPSNLRNLI 626 (1096)
Q Consensus 553 ~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~~l~~---lp~~i~~l~ 626 (1096)
..+..|..|++.+..++++ ..+..|++|++|.++.| .+. .++-...++++|++|++++| +++. ++. +.++.
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p-l~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP-LKELE 116 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch-hhhhc
Confidence 3455555555555555544 23446677777777777 443 55555556677777777775 3332 222 45666
Q ss_pred CCceEEeccccccccCc----ccCCCCCCCCcCCceEec
Q 043647 627 NLRHLVVTYVDLIREMP----LGIKELKCLQMLSNFIVG 661 (1096)
Q Consensus 627 ~L~~L~l~~~~~~~~~p----~~i~~L~~L~~L~~~~~~ 661 (1096)
+|..|++.+|.... +- ..+.-+++|..|+.+.+.
T Consensus 117 nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred chhhhhcccCCccc-cccHHHHHHHHhhhhccccccccC
Confidence 77777777765222 21 114446667766655443
No 249
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.94 E-value=0.059 Score=53.80 Aligned_cols=117 Identities=14% Similarity=0.081 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccC--C-------------CCCCCcHH
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITF--S-------------PNSLKDLN 269 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--~-------------~~~~~~~~ 269 (1096)
.+++|.|..|.|||||++.+....... ...+++.-. +.......+-..++. + ......-+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~ 103 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGE 103 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCC--CCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHH
Confidence 589999999999999999998753221 222222110 111111111111110 0 00011112
Q ss_pred HHHHHHHHHhCCCcEEEEEecCCCC-ChhhHHHhhcccCCCCCCcEEEEEcCchhhhh
Q 043647 270 QIQVQLREAVAGKRFLIVLDDVWSK-NYSLWNTLKSPFRAGASGSKILVTTCSTDVAL 326 (1096)
Q Consensus 270 ~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 326 (1096)
...-.+.+.+..++=++++|+.... +....+.+...+.....+..||++|.+.....
T Consensus 104 ~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 104 RQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 2223344555677788899987543 22223333333322223677888888877664
No 250
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.93 E-value=0.082 Score=65.63 Aligned_cols=178 Identities=16% Similarity=0.145 Sum_probs=93.2
Q ss_pred CccccchHHHHHHHHHHhcCC--------CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDE--------PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILR 249 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~--------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~ 249 (1096)
.++.|.+..++++.+.+.-.- .+-...+-|.++|++|+|||++|+++++.... . ++.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~-~-----fi~v~~~----- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA-N-----FIAVRGP----- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC-C-----EEEEehH-----
Confidence 346788777777766553110 01123456889999999999999999986432 1 1222211
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCC--------h----hhHHHhhcccCC--CCCCcEE
Q 043647 250 ITKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKN--------Y----SLWNTLKSPFRA--GASGSKI 315 (1096)
Q Consensus 250 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~----~~~~~l~~~l~~--~~~gs~i 315 (1096)
+++.... ..+...+.......-+..+.+|++|+++.-. . .....+...+.. ...+--|
T Consensus 522 ---~l~~~~v-----Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~v 593 (733)
T TIGR01243 522 ---EILSKWV-----GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVV 593 (733)
T ss_pred ---HHhhccc-----CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEE
Confidence 1111111 1112222233333335678999999985310 0 012223333322 1234456
Q ss_pred EEEcCchhhhhhc-----CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCc
Q 043647 316 LVTTCSTDVALTV-----GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLP 379 (1096)
Q Consensus 316 ivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 379 (1096)
|.||..++..... .-...+.++..+.++-.++|..+.-+ .......+ ...+++.+.|.-
T Consensus 594 I~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~-~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 594 IAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS-MPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC-CCCCccCC----HHHHHHHcCCCC
Confidence 6677655433221 12356788888988888898766522 11111112 245667777654
No 251
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.93 E-value=0.045 Score=54.07 Aligned_cols=113 Identities=17% Similarity=0.197 Sum_probs=60.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccC---------cEEEEEecCccChHHHHHHHHHhccCCCC----CCC--c-
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFN---------LRSWVCVSDDFDILRITKSILESITFSPN----SLK--D- 267 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~---------~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~--~- 267 (1096)
-.+++|+|+.|.|||||.+.+..+.-.-.+. .+.|+ .+ .+.+..++.... ... +
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 3589999999999999999886321000111 12232 21 345566654321 111 1
Q ss_pred HHHHHHHHHHHhCCC--cEEEEEecCCCC-ChhhHHHhhcccCCC-CCCcEEEEEcCchhhhh
Q 043647 268 LNQIQVQLREAVAGK--RFLIVLDDVWSK-NYSLWNTLKSPFRAG-ASGSKILVTTCSTDVAL 326 (1096)
Q Consensus 268 ~~~~~~~l~~~l~~k--r~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 326 (1096)
-....-.+...+..+ .-++++|+.-.. +....+.+...+... ..|..||++|.+.+...
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 112222344445455 678888987432 223333333333321 24678889998887654
No 252
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.90 E-value=0.0086 Score=57.97 Aligned_cols=99 Identities=19% Similarity=0.221 Sum_probs=63.3
Q ss_pred CcceEEEecccccccCCCCcCCCCccceeecccccccccccccc-cCCCCcEEeccCcccCcccCc--cccCCCCCceEE
Q 043647 556 TKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESIC-SLCNLQFLILRGCYRLKKLPS--NLRNLINLRHLV 632 (1096)
Q Consensus 556 ~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~ 632 (1096)
.....+||++|.+..++ .|..+..|..|.|.+|+|+.+-+.+. -+++|++|.|.+| .+.++-+ .+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 34556788888776653 46677788888888888887755544 4566888888774 4555432 245677888887
Q ss_pred eccccccccCc----ccCCCCCCCCcCCc
Q 043647 633 VTYVDLIREMP----LGIKELKCLQMLSN 657 (1096)
Q Consensus 633 l~~~~~~~~~p----~~i~~L~~L~~L~~ 657 (1096)
+-+|. ...-. --+.++++|++|+.
T Consensus 120 ll~Np-v~~k~~YR~yvl~klp~l~~LDF 147 (233)
T KOG1644|consen 120 LLGNP-VEHKKNYRLYVLYKLPSLRTLDF 147 (233)
T ss_pred ecCCc-hhcccCceeEEEEecCcceEeeh
Confidence 77775 22222 12556667766654
No 253
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.12 Score=58.60 Aligned_cols=97 Identities=18% Similarity=0.271 Sum_probs=63.0
Q ss_pred CccccchHHHHHHHHHHhcCCC-------CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEP-------TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 250 (1096)
.++=|.+..+.++.+++..... +-...+=|.++|++|.|||.||++++.+..+- ++.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP------f~~isAp------ 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP------FLSISAP------ 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc------eEeecch------
Confidence 3566888888888777654221 12345678899999999999999999976543 2333322
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCC
Q 043647 251 TKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWS 293 (1096)
Q Consensus 251 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 293 (1096)
+|...+.+ .+.+.+.+...+.-..-++++++|+++-
T Consensus 258 --eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 --EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred --hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 23332222 2334444555556677899999999964
No 254
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.84 E-value=0.032 Score=58.73 Aligned_cols=50 Identities=20% Similarity=0.162 Sum_probs=36.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcccccc-c----cCcEEEEEecCccChHHHH
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAVE-M----FNLRSWVCVSDDFDILRIT 251 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~----f~~~~wv~~~~~~~~~~~~ 251 (1096)
..-.++.|+|.+|+|||++|..++...... . ...++|++....++..++.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 345799999999999999999887542222 1 3678999988777655443
No 255
>PRK06696 uridine kinase; Validated
Probab=95.84 E-value=0.011 Score=61.55 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=35.8
Q ss_pred cchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 182 GRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 182 gr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
.|++-+++|.+.+.... .....+|+|.|.+|+||||+|+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~--~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLN--LTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhC--CCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 36677788888886532 2457899999999999999999998753
No 256
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.83 E-value=0.0042 Score=37.24 Aligned_cols=20 Identities=30% Similarity=0.645 Sum_probs=11.0
Q ss_pred ccceeecccccccccccccc
Q 043647 580 HLRYINLSETMIRCLPESIC 599 (1096)
Q Consensus 580 ~Lr~L~L~~~~i~~lp~~i~ 599 (1096)
+|++|+|++|.++.+|++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35555555555555555544
No 257
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.83 E-value=0.02 Score=60.61 Aligned_cols=56 Identities=23% Similarity=0.236 Sum_probs=39.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcccccc-----ccCcEEEEEecCccChHHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVE-----MFNLRSWVCVSDDFDILRITKSILESIT 259 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 259 (1096)
.-.+.=|+|.+|+|||+||..++-..... .-..++||+-...++..++. +|+++..
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 34688999999999999997776443221 12358999988889887775 4666543
No 258
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.82 E-value=0.017 Score=55.97 Aligned_cols=86 Identities=20% Similarity=0.204 Sum_probs=58.0
Q ss_pred cCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccC-cCCCCCCCCcCeEeeccCCCCCCCCC---
Q 043647 992 GLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLS-SNGFRNLAFLEYLQIRDCPKLTSFPE--- 1067 (1096)
Q Consensus 992 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~-~~~l~~l~~L~~L~l~~c~~l~~l~~--- 1067 (1096)
.|.+++.|..|.+.+| +|..+.+... ..++.|.+|.+.+ |+|+.+. ...+..+|.|++|.+-++| +..-..
T Consensus 59 ~lp~l~rL~tLll~nN-rIt~I~p~L~--~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~ 133 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNN-RITRIDPDLD--TFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRL 133 (233)
T ss_pred cCCCccccceEEecCC-cceeeccchh--hhccccceEEecC-cchhhhhhcchhccCCccceeeecCCc-hhcccCcee
Confidence 5667788888888888 7777776543 4567888888888 5566553 1356778888888888843 343222
Q ss_pred --CCccccccceeeccC
Q 043647 1068 --AGLPSSLLELYINDY 1082 (1096)
Q Consensus 1068 --~~l~~~L~~L~i~~c 1082 (1096)
....|+|+.||..+-
T Consensus 134 yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 134 YVLYKLPSLRTLDFQKV 150 (233)
T ss_pred EEEEecCcceEeehhhh
Confidence 112567888887754
No 259
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.82 E-value=0.034 Score=53.30 Aligned_cols=118 Identities=17% Similarity=0.110 Sum_probs=60.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEe---cCccChHHHHHHHHHhccC----CC--CCCCcHH------
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCV---SDDFDILRITKSILESITF----SP--NSLKDLN------ 269 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~---~~~~~~~~~~~~i~~~l~~----~~--~~~~~~~------ 269 (1096)
..|-|++..|.||||+|....-......+ .+.+|.. ........+++.+ ..+.. .. ....+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~-~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGY-RVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 47888999999999999655543222112 2223222 1122333333333 11100 00 0001111
Q ss_pred -HHHHHHHHHhC-CCcEEEEEecCCCC---ChhhHHHhhcccCCCCCCcEEEEEcCchhh
Q 043647 270 -QIQVQLREAVA-GKRFLIVLDDVWSK---NYSLWNTLKSPFRAGASGSKILVTTCSTDV 324 (1096)
Q Consensus 270 -~~~~~l~~~l~-~kr~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 324 (1096)
+..+..++.++ +.-=|+|||++-.. .....+.+...+.....+..||+|.|+..-
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~ 140 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPK 140 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCH
Confidence 11222333443 44559999998432 223455566666666667899999998653
No 260
>PHA02244 ATPase-like protein
Probab=95.81 E-value=0.12 Score=56.43 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
-|.|+|++|+|||++|++++..
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999875
No 261
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.78 E-value=0.07 Score=60.59 Aligned_cols=88 Identities=22% Similarity=0.106 Sum_probs=48.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecC-ccChHHHHHHHHHhccCCCCC---CCcHHHHHHHHHHH
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSD-DFDILRITKSILESITFSPNS---LKDLNQIQVQLREA 278 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~ 278 (1096)
.+.+|.++|.+|+||||+|..++.......+ .++-|++.. .....+.++.++.+++..... ..+.........+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 4789999999999999999888865433222 333344322 112344556666666543221 12222222222223
Q ss_pred hCCCcEEEEEecCC
Q 043647 279 VAGKRFLIVLDDVW 292 (1096)
Q Consensus 279 l~~kr~LlVlDdv~ 292 (1096)
.++. -+||+|..-
T Consensus 173 ~~~~-DvVIIDTAG 185 (437)
T PRK00771 173 FKKA-DVIIVDTAG 185 (437)
T ss_pred hhcC-CEEEEECCC
Confidence 3333 567778763
No 262
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.77 E-value=0.087 Score=52.18 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=59.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecC--ccChHHHHHHHHHhccC--CCCC----------CCcHH
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSD--DFDILRITKSILESITF--SPNS----------LKDLN 269 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~--~~~~----------~~~~~ 269 (1096)
-.+++|+|..|.|||||.+.++.-... ....+++.-.. ........ ..++. +... ...-+
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~----~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDP--TSGEILIDGVDLRDLDLESLR----KNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEhhhcCHHHHH----hhEEEEcCCchhccchHHHHhhCHHH
Confidence 358999999999999999999875322 22333321100 00111111 11110 0000 00011
Q ss_pred HHHHHHHHHhCCCcEEEEEecCCCC-ChhhHHHhhcccCCCCCCcEEEEEcCchhhhhh
Q 043647 270 QIQVQLREAVAGKRFLIVLDDVWSK-NYSLWNTLKSPFRAGASGSKILVTTCSTDVALT 327 (1096)
Q Consensus 270 ~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 327 (1096)
...-.+...+..++-++++|+-... +....+.+...+.....+..||++|.+.+....
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 1122344555667789999987532 222333333333322235678888888776643
No 263
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.73 E-value=0.037 Score=57.92 Aligned_cols=88 Identities=19% Similarity=0.168 Sum_probs=53.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcccccccc------CcEEEEEecCccChHHHHHHHHHhccCCCC---------CCCc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVEMF------NLRSWVCVSDDFDILRITKSILESITFSPN---------SLKD 267 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~ 267 (1096)
.-.++.|+|.+|+|||++|..+...... .. ..++|+.....++...+. +++........ ...+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~-~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQL-PGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhc-ccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCC
Confidence 4579999999999999999888754322 22 567899887776665543 33333221100 1134
Q ss_pred HHHHHHHHHHHh----CCCcEEEEEecCC
Q 043647 268 LNQIQVQLREAV----AGKRFLIVLDDVW 292 (1096)
Q Consensus 268 ~~~~~~~l~~~l----~~kr~LlVlDdv~ 292 (1096)
.+++...+.+.. ..+.-++|+|.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 445544444443 2345588888874
No 264
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.72 E-value=0.09 Score=51.72 Aligned_cols=115 Identities=13% Similarity=0.081 Sum_probs=59.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccc----ccCc---EEEEEecCccC--hHHHHHHHHHhccCCCCCCCcHHHHHHH
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVE----MFNL---RSWVCVSDDFD--ILRITKSILESITFSPNSLKDLNQIQVQ 274 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~f~~---~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 274 (1096)
-.+++|+|..|.|||||++.+....... .++. +.+ +.+... ...+...+... .......-+...-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 3589999999999999999998753321 2221 222 223221 11233333210 11112222223334
Q ss_pred HHHHhCCCcEEEEEecCCCC-ChhhHHHhhcccCCCCCCcEEEEEcCchhhh
Q 043647 275 LREAVAGKRFLIVLDDVWSK-NYSLWNTLKSPFRAGASGSKILVTTCSTDVA 325 (1096)
Q Consensus 275 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 325 (1096)
+.+.+..++=++++|+--.. +....+.+...+... +..||++|.+....
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 45555567778889986432 222333333333322 35688888877654
No 265
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.72 E-value=0.007 Score=61.91 Aligned_cols=79 Identities=24% Similarity=0.247 Sum_probs=55.1
Q ss_pred CcceEEEecccccccCCC--Cc-CCCCccceeeccccccccc---ccccccCCCCcEEeccCcc---cCcccCccccCCC
Q 043647 556 TKLRVLSLKKYYITELPH--SI-GDLKHLRYINLSETMIRCL---PESICSLCNLQFLILRGCY---RLKKLPSNLRNLI 626 (1096)
Q Consensus 556 ~~Lr~L~L~~~~~~~lp~--~i-~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~---~l~~lp~~i~~l~ 626 (1096)
+.+..|.+.++.|...-+ .| ....+++.|||.+|.|+.- -..+.+|+.|++|+|+.|. .++.+| ..+.
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~ 121 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLK 121 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---cccc
Confidence 345566777777665422 23 3568999999999999854 3445789999999999853 223333 3567
Q ss_pred CCceEEecccc
Q 043647 627 NLRHLVVTYVD 637 (1096)
Q Consensus 627 ~L~~L~l~~~~ 637 (1096)
+|+.|.+.++.
T Consensus 122 nl~~lVLNgT~ 132 (418)
T KOG2982|consen 122 NLRVLVLNGTG 132 (418)
T ss_pred ceEEEEEcCCC
Confidence 89999998875
No 266
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.72 E-value=0.034 Score=54.62 Aligned_cols=39 Identities=31% Similarity=0.296 Sum_probs=28.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCcc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDF 245 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~ 245 (1096)
++.|+|.+|+||||+|+.+...... .-..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcch
Confidence 3689999999999999988775432 33457777765554
No 267
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.66 E-value=0.043 Score=59.07 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=47.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCc-cChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhC
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDD-FDILRITKSILESITFSPNSLKDLNQIQVQLREAVA 280 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 280 (1096)
..++++|+|+.|+||||++..++.....+ .-..+..|+.... ....+.+....+.++.......+...+...+... .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-R 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-c
Confidence 45799999999999999998887654332 1124555554321 1122333333444443322233444554444433 3
Q ss_pred CCcEEEEEecC
Q 043647 281 GKRFLIVLDDV 291 (1096)
Q Consensus 281 ~kr~LlVlDdv 291 (1096)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 347777754
No 268
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.62 E-value=0.14 Score=51.37 Aligned_cols=117 Identities=21% Similarity=0.336 Sum_probs=69.2
Q ss_pred CccccchHHHHHHHHH---HhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEM---VLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSI 254 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~---L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 254 (1096)
..++|.+...+.+++= +..+. ...-|.+||.-|.||++|++++.+....+.-. -|.|...
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~----pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr---LVEV~k~---------- 122 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGL----PANNVLLWGARGTGKSSLVKALLNEYADEGLR---LVEVDKE---------- 122 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCC----cccceEEecCCCCChHHHHHHHHHHHHhcCCe---EEEEcHH----------
Confidence 4588999888888752 22222 24568899999999999999999865443111 2222211
Q ss_pred HHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCC-ChhhHHHhhcccCCCC---CCcEEEEEcCch
Q 043647 255 LESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSK-NYSLWNTLKSPFRAGA---SGSKILVTTCST 322 (1096)
Q Consensus 255 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~---~gs~iivTtR~~ 322 (1096)
+..+...+...++. +..||.|..||..=+ ....+..++..+..+- +...++..|.++
T Consensus 123 ---------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 ---------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ---------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 11222233333332 478999999998533 2355777777765432 333444445443
No 269
>PRK13695 putative NTPase; Provisional
Probab=95.60 E-value=0.017 Score=57.42 Aligned_cols=23 Identities=43% Similarity=0.397 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
.|+|.|.+|+|||||++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999987653
No 270
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.57 E-value=0.034 Score=57.75 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=31.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccC
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFD 246 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~ 246 (1096)
..-.++.|.|.+|+||||+|.+++..... .-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~-~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAG-QGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEECCCCCH
Confidence 34579999999999999999888765422 234577887654443
No 271
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.46 Score=54.92 Aligned_cols=132 Identities=15% Similarity=0.170 Sum_probs=67.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCC
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAG 281 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 281 (1096)
...+-|..+|++|.|||++|+++++..... |+.+..+ +++.. . -..+...+....++.=+-
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~n------Flsvkgp----EL~sk----~-----vGeSEr~ir~iF~kAR~~ 526 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMN------FLSVKGP----ELFSK----Y-----VGESERAIREVFRKARQV 526 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCC------eeeccCH----HHHHH----h-----cCchHHHHHHHHHHHhhc
Confidence 456788999999999999999999864332 2333222 11110 0 011122222222332234
Q ss_pred CcEEEEEecCCCCC-----------hhhHHHhhcccCCCCCCcEEEE--EcCchh-hhhh-cC---CcceeeCCCCChHh
Q 043647 282 KRFLIVLDDVWSKN-----------YSLWNTLKSPFRAGASGSKILV--TTCSTD-VALT-VG---TAEYYNLKLLSDDD 343 (1096)
Q Consensus 282 kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~~~gs~iiv--TtR~~~-v~~~-~~---~~~~~~l~~L~~~~ 343 (1096)
..++|.||.++... .....++..-+........|+| .|-.++ +-.. +. .+..+.++.-+.+.
T Consensus 527 aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~a 606 (693)
T KOG0730|consen 527 APCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEA 606 (693)
T ss_pred CCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHH
Confidence 56788888775321 0112233333333222223333 232222 2211 12 23566777777777
Q ss_pred HHHHHHHhh
Q 043647 344 CWSVFVKHA 352 (1096)
Q Consensus 344 ~~~lf~~~a 352 (1096)
-.++|+.++
T Consensus 607 R~~Ilk~~~ 615 (693)
T KOG0730|consen 607 RLEILKQCA 615 (693)
T ss_pred HHHHHHHHH
Confidence 788999888
No 272
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.54 E-value=0.039 Score=60.97 Aligned_cols=89 Identities=15% Similarity=0.168 Sum_probs=52.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecC-ccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCC
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSD-DFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAG 281 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 281 (1096)
.+++.++|+.|+||||++..+......+ ....+..++... .....+-++...+.++.......+..++...+. .+.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-HhcC
Confidence 4689999999999999999988754322 223455555322 223445555556666554333333333333343 3445
Q ss_pred CcEEEEEecCCCC
Q 043647 282 KRFLIVLDDVWSK 294 (1096)
Q Consensus 282 kr~LlVlDdv~~~ 294 (1096)
+ =+|++|..-..
T Consensus 216 ~-DlVLIDTaG~~ 227 (374)
T PRK14722 216 K-HMVLIDTIGMS 227 (374)
T ss_pred C-CEEEEcCCCCC
Confidence 4 45668988543
No 273
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.52 E-value=0.051 Score=55.11 Aligned_cols=81 Identities=21% Similarity=0.243 Sum_probs=45.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccC---cEEEEEecCccChHHHHHHHHHh---ccCCCCCCCcHHHHHHHHHHHh
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDKAVEMFN---LRSWVCVSDDFDILRITKSILES---ITFSPNSLKDLNQIQVQLREAV 279 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~i~~~---l~~~~~~~~~~~~~~~~l~~~l 279 (1096)
||+|.|.+|+||||+|+.+.......... ....++...-.........--.. .........+.+.+.+.++...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 79999999999999999998765433222 23333332222222222211111 1111224466777888888777
Q ss_pred CCCcEEE
Q 043647 280 AGKRFLI 286 (1096)
Q Consensus 280 ~~kr~Ll 286 (1096)
+++.+-+
T Consensus 81 ~g~~i~~ 87 (194)
T PF00485_consen 81 NGGSIEI 87 (194)
T ss_dssp TTSCEEE
T ss_pred CCCcccc
Confidence 7776544
No 274
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.52 E-value=0.098 Score=52.33 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=64.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEE---ecCccChHHH------HHHHHHhccCCCC------CCCcHH
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVC---VSDDFDILRI------TKSILESITFSPN------SLKDLN 269 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~---~~~~~~~~~~------~~~i~~~l~~~~~------~~~~~~ 269 (1096)
.+++|+|..|.|||||++.++..... ....+++. +.. .+.... ..++++.++.... ....-+
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~--~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKP--SSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 58999999999999999999875322 22333332 211 122121 1124455543321 111112
Q ss_pred HHHHHHHHHhCCCcEEEEEecCCCC-ChhhHHHhhcccCCC-CC-CcEEEEEcCchhhhhh
Q 043647 270 QIQVQLREAVAGKRFLIVLDDVWSK-NYSLWNTLKSPFRAG-AS-GSKILVTTCSTDVALT 327 (1096)
Q Consensus 270 ~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~iivTtR~~~v~~~ 327 (1096)
...-.+.+.+...+-++++|+.-.. +....+.+...+... .. |..||++|.+......
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 2223345556667788999987432 223344444443322 12 6788888888765533
No 275
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.46 E-value=0.28 Score=46.35 Aligned_cols=80 Identities=18% Similarity=0.271 Sum_probs=56.0
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHhHHhHHHH
Q 043647 3 VGGLFLSAFLQMLFDRLMSREVLNFARREGVISKLEKWKKTLLMIQAVFSDAEEKQLT-DKAVKMWLDDLQDLAYDVEDI 81 (1096)
Q Consensus 3 ~~~~~~~~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~-~~~~~~wl~~lr~~~yd~ed~ 81 (1096)
++|++++++++.+... +.....+....+.-.++|..+++.|.-++++.+.-... +..-+.-++++.+...+++++
T Consensus 6 ~~gaalG~~~~eLlk~----v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~L 81 (147)
T PF05659_consen 6 VGGAALGAVFGELLKA----VIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKEL 81 (147)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 4455555555555444 44445555667888999999999999999988764321 222366778899999999999
Q ss_pred HHHHH
Q 043647 82 LDEFA 86 (1096)
Q Consensus 82 ld~~~ 86 (1096)
++.|.
T Consensus 82 V~k~s 86 (147)
T PF05659_consen 82 VEKCS 86 (147)
T ss_pred HHHhc
Confidence 99874
No 276
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.43 E-value=0.072 Score=59.30 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..++.++|++|+||||+|..++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999888864
No 277
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.052 Score=56.52 Aligned_cols=80 Identities=19% Similarity=0.287 Sum_probs=47.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccc---ccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhC
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVE---MFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVA 280 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 280 (1096)
-|+|.++|++|.|||+|+++.++...++ .|....-+.+.. ..++..-..+ +..-...+..+|++.++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 4789999999999999999999986554 333333333321 1222211111 12334555566667665
Q ss_pred CCc--EEEEEecCCC
Q 043647 281 GKR--FLIVLDDVWS 293 (1096)
Q Consensus 281 ~kr--~LlVlDdv~~ 293 (1096)
++. +++.+|.|.+
T Consensus 247 d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVES 261 (423)
T ss_pred CCCcEEEEEeHHHHH
Confidence 554 5566899853
No 278
>PRK08233 hypothetical protein; Provisional
Probab=95.39 E-value=0.048 Score=54.79 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
..+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4799999999999999999998754
No 279
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.38 E-value=0.087 Score=55.87 Aligned_cols=128 Identities=17% Similarity=0.133 Sum_probs=67.2
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCC--
Q 043647 186 DKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPN-- 263 (1096)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-- 263 (1096)
..+.++..+... .+..-++|+|+.|.||||+.+.+...... ....+|+.- ......+-..++......-..
T Consensus 97 ~~~~~l~~l~~~----~~~~~~~i~g~~g~GKttl~~~l~~~~~~--~~G~i~~~g-~~v~~~d~~~ei~~~~~~~~q~~ 169 (270)
T TIGR02858 97 AADKLLPYLVRN----NRVLNTLIISPPQCGKTTLLRDLARILST--GISQLGLRG-KKVGIVDERSEIAGCVNGVPQHD 169 (270)
T ss_pred cHHHHHHHHHhC----CCeeEEEEEcCCCCCHHHHHHHHhCccCC--CCceEEECC-EEeecchhHHHHHHHhccccccc
Confidence 445555556432 23568999999999999999999975432 122233210 000000111223222211110
Q ss_pred -----CC-CcHHHHHHHHHHHh-CCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchhhhh
Q 043647 264 -----SL-KDLNQIQVQLREAV-AGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTDVAL 326 (1096)
Q Consensus 264 -----~~-~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 326 (1096)
+. +.... ...+...+ ...+=++++|.+... +.+..+...+. .|..||+||.+..+..
T Consensus 170 ~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 170 VGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGRE--EDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred ccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 00 11111 11233333 257889999998543 55665655542 4778999998766643
No 280
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.38 E-value=0.079 Score=55.33 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcccc
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKA 229 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 229 (1096)
....+|+|.|+.|+|||||++.+.....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4578999999999999999998887543
No 281
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.38 E-value=0.013 Score=54.55 Aligned_cols=31 Identities=32% Similarity=0.299 Sum_probs=24.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccC
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFN 234 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~ 234 (1096)
.--|.|.||+|+||||+++.+.+..+...|.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~k 35 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYK 35 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCce
Confidence 3468999999999999999999765554444
No 282
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.34 E-value=0.031 Score=60.29 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=25.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccc
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAV 230 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 230 (1096)
..++.++|||++|.|||.+|++++++...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 45789999999999999999999986543
No 283
>PRK14974 cell division protein FtsY; Provisional
Probab=95.33 E-value=0.17 Score=55.40 Aligned_cols=90 Identities=18% Similarity=0.077 Sum_probs=48.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCcc--ChHHHHHHHHHhccCCCC---CCCcHHH-HHHHHH
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDF--DILRITKSILESITFSPN---SLKDLNQ-IQVQLR 276 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~---~~~~~~~-~~~~l~ 276 (1096)
+..+|.++|+.|+||||++..++.......+ .++.+. .+.+ ...+-++..+..++..-. ...+... ....+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 4689999999999999988777764332233 233343 2322 233344556666654321 1223222 223333
Q ss_pred HHhCCCcEEEEEecCCCC
Q 043647 277 EAVAGKRFLIVLDDVWSK 294 (1096)
Q Consensus 277 ~~l~~kr~LlVlDdv~~~ 294 (1096)
..-....=+|++|-+...
T Consensus 217 ~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHhCCCCEEEEECCCcc
Confidence 322222238999988544
No 284
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.33 E-value=0.025 Score=57.29 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=52.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHh-----
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAV----- 279 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----- 279 (1096)
+++.|.|++|+||||+++.+........ ..+.+..........+.+ ..+.. ..++.. .+....
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g--~~v~~~apT~~Aa~~L~~----~~~~~---a~Ti~~---~l~~~~~~~~~ 86 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG--KRVIGLAPTNKAAKELRE----KTGIE---AQTIHS---FLYRIPNGDDE 86 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEEESSHHHHHHHHH----HHTS----EEEHHH---HTTEECCEECC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC--CeEEEECCcHHHHHHHHH----hhCcc---hhhHHH---HHhcCCccccc
Confidence 6889999999999999988876433322 233333333322233222 22211 011110 000000
Q ss_pred ----CCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCc
Q 043647 280 ----AGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCS 321 (1096)
Q Consensus 280 ----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 321 (1096)
..++-+||+|++.-.+...+..+...... .|+|+|+.=-.
T Consensus 87 ~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 87 GRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp SSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred ccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 13345999999977766667777666544 47788776433
No 285
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.31 E-value=0.045 Score=59.53 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=41.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcccccc-----ccCcEEEEEecCccChHHHHHHHHHhccC
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVE-----MFNLRSWVCVSDDFDILRITKSILESITF 260 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 260 (1096)
.-+++-|+|.+|+|||++|..++-..... .-..++||+....++++++.+ ++++++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 45789999999999999997765322111 124689999988888887754 5666654
No 286
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.25 E-value=0.015 Score=55.20 Aligned_cols=107 Identities=16% Similarity=0.147 Sum_probs=60.2
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc--ccCcEEEEEecCccChHHHHHHHHHhc
Q 043647 181 FGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE--MFNLRSWVCVSDDFDILRITKSILESI 258 (1096)
Q Consensus 181 vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~f~~~~wv~~~~~~~~~~~~~~i~~~l 258 (1096)
||+...++++.+.+..-. ....-|.|+|..|+||+++|+.++...... .|..+ .+...
T Consensus 1 vG~S~~~~~l~~~l~~~a---~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~-------------- 60 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA---KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL-------------- 60 (138)
T ss_dssp --SCHHHHHHHHHHHHHH---CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT--------------
T ss_pred CCCCHHHHHHHHHHHHHh---CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC--------------
Confidence 466666777666654321 123457899999999999999888753321 12110 00000
Q ss_pred cCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCC-CCCcEEEEEcCch
Q 043647 259 TFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAG-ASGSKILVTTCST 322 (1096)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtR~~ 322 (1096)
. .+.+.+ .+.--++|+|++.-+......+...+... ....|+|.||+..
T Consensus 61 --------~----~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 61 --------P----AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp --------C----HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred --------c----HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 0 111111 14445779999877666666666666532 4567999998753
No 287
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.25 E-value=0.17 Score=48.84 Aligned_cols=124 Identities=17% Similarity=0.272 Sum_probs=69.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEE---------------------ecCcc-----------------
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVC---------------------VSDDF----------------- 245 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~---------------------~~~~~----------------- 245 (1096)
-..+.++|+.|.||||+.+.+|...+.. ...+|+. |-+++
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt--~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~ 105 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPT--RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLR 105 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCC--CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhh
Confidence 3588999999999999999999865432 1233331 01111
Q ss_pred ----ChHHH---HHHHHHhccCCC------CCCCcHHHHHHHHHHHhCCCcEEEEEecCCC--CChhhHHHhhcccCCCC
Q 043647 246 ----DILRI---TKSILESITFSP------NSLKDLNQIQVQLREAVAGKRFLIVLDDVWS--KNYSLWNTLKSPFRAGA 310 (1096)
Q Consensus 246 ----~~~~~---~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~~l~~~l~~~~ 310 (1096)
...++ ..+.++..+... .....-++-...|.+.+-+++-+++=|.--- +....|+-+.-.-.-+.
T Consensus 106 v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr 185 (223)
T COG2884 106 VIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR 185 (223)
T ss_pred ccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh
Confidence 11222 222233333221 1122233434456666678888888885321 11134554332222245
Q ss_pred CCcEEEEEcCchhhhhhcC
Q 043647 311 SGSKILVTTCSTDVALTVG 329 (1096)
Q Consensus 311 ~gs~iivTtR~~~v~~~~~ 329 (1096)
.|+.|+++|.+.++...+.
T Consensus 186 ~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 186 LGTTVLMATHDLELVNRMR 204 (223)
T ss_pred cCcEEEEEeccHHHHHhcc
Confidence 6999999999998877653
No 288
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.24 E-value=0.037 Score=51.70 Aligned_cols=44 Identities=30% Similarity=0.419 Sum_probs=33.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCC
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFS 261 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 261 (1096)
+|.|.|++|.||||+|+.+.+.....+ | +.-.++++++++.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~------v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKL------V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCce------e------eccHHHHHHHHHcCCC
Confidence 689999999999999999998643321 1 3346888888887754
No 289
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.24 E-value=0.097 Score=52.00 Aligned_cols=23 Identities=43% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
++.++|++|+||||+++.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999998887643
No 290
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.22 E-value=0.08 Score=51.88 Aligned_cols=117 Identities=17% Similarity=0.123 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecC--ccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCC
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSD--DFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGK 282 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 282 (1096)
.+++|+|..|.|||||.+.++.... .....+++.-.. ..+..+..+ ..++.... ...-+...-.+.+.+-.+
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~q-LS~G~~qrl~laral~~~ 100 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVSFASPRDARR---AGIAMVYQ-LSVGERQMVEIARALARN 100 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCcCCHHHHHh---cCeEEEEe-cCHHHHHHHHHHHHHhcC
Confidence 5899999999999999999986432 223334432111 111111111 11111111 112222233345555667
Q ss_pred cEEEEEecCCCC-ChhhHHHhhcccCCC-CCCcEEEEEcCchhhhhh
Q 043647 283 RFLIVLDDVWSK-NYSLWNTLKSPFRAG-ASGSKILVTTCSTDVALT 327 (1096)
Q Consensus 283 r~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~ 327 (1096)
+-++++|+.-.. +....+.+...+... ..|..||++|.+......
T Consensus 101 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 101 ARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 788889987542 223334444443322 236678888888765433
No 291
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.42 Score=47.87 Aligned_cols=150 Identities=17% Similarity=0.184 Sum_probs=81.9
Q ss_pred ccc-chHHHHHHHHHHhcCC--------CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHH
Q 043647 180 VFG-RDEDKAKILEMVLRDE--------PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 180 ~vg-r~~~~~~l~~~L~~~~--------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 250 (1096)
++| -+..+.+|.+.+--+- -+-.+++-+.++|++|.|||-||++|++. ....|+.||.. ++
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh------t~c~firvsgs----el 217 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH------TDCTFIRVSGS----EL 217 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh------cceEEEEechH----HH
Confidence 555 4566666655442111 02245677899999999999999999963 34556777654 22
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHh----CCCcEEEEEecCCCC-----------ChhhHHH---hhcccCCC--C
Q 043647 251 TKSILESITFSPNSLKDLNQIQVQLREAV----AGKRFLIVLDDVWSK-----------NYSLWNT---LKSPFRAG--A 310 (1096)
Q Consensus 251 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~kr~LlVlDdv~~~-----------~~~~~~~---l~~~l~~~--~ 310 (1096)
.+..+. . -.+.+++.+ ...+.+|+.|.+++. +.+.... +...+..+ .
T Consensus 218 vqk~ig----e---------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat 284 (404)
T KOG0728|consen 218 VQKYIG----E---------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT 284 (404)
T ss_pred HHHHhh----h---------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc
Confidence 222211 0 111222221 355778888888652 1111111 22222222 2
Q ss_pred CCcEEEEEcCchhhhhhc-----CCcceeeCCCCChHhHHHHHHHhh
Q 043647 311 SGSKILVTTCSTDVALTV-----GTAEYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 311 ~gs~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a 352 (1096)
+.-+||..|..-++.... ..++.++.++-+++.-.++++-+.
T Consensus 285 knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 285 KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 345788877655544321 223557777777777777776554
No 292
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.21 E-value=0.059 Score=54.17 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
+|.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998874
No 293
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.16 Score=58.78 Aligned_cols=56 Identities=23% Similarity=0.380 Sum_probs=43.3
Q ss_pred CCccccchHHHHHHHHHHhcCC-CCCCCceEEEEEcCCCCcHHHHHHHHhccccccc
Q 043647 177 EPAVFGRDEDKAKILEMVLRDE-PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEM 232 (1096)
Q Consensus 177 ~~~~vgr~~~~~~l~~~L~~~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 232 (1096)
+.+-+|.++-+++|++++--.. .+.-+-+++..+|++|||||.+|+.++.-...++
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 4567899999999999885332 1234568999999999999999999997544333
No 294
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.32 Score=55.37 Aligned_cols=155 Identities=15% Similarity=0.246 Sum_probs=85.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKR 283 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 283 (1096)
..=|.+||++|.|||-||++|+|+.... |++|..+ +++.... ..+...+....++.=..-+
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N------FisVKGP----ELlNkYV---------GESErAVR~vFqRAR~saP 605 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN------FISVKGP----ELLNKYV---------GESERAVRQVFQRARASAP 605 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc------eEeecCH----HHHHHHh---------hhHHHHHHHHHHHhhcCCC
Confidence 4568899999999999999999975432 4555443 2222111 1122233333344445779
Q ss_pred EEEEEecCCCC-----Ch------hhHHHhhcccCCC--CCCcEEEEEcCchhhhhhc--CC---cceeeCCCCChHhHH
Q 043647 284 FLIVLDDVWSK-----NY------SLWNTLKSPFRAG--ASGSKILVTTCSTDVALTV--GT---AEYYNLKLLSDDDCW 345 (1096)
Q Consensus 284 ~LlVlDdv~~~-----~~------~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~~~--~~---~~~~~l~~L~~~~~~ 345 (1096)
+.|+||.++.- +. ....++..-+... -.|--||-.|-.+++.... .+ +...-++.-+.+|-.
T Consensus 606 CVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~ 685 (802)
T KOG0733|consen 606 CVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERV 685 (802)
T ss_pred eEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHH
Confidence 99999999642 00 1123343333322 2466677777666654321 22 245566777788888
Q ss_pred HHHHHhhcCCC-CCCCCcchhHHHHHHHHHhCCCc
Q 043647 346 SVFVKHAFEKR-DVGLHRHMGSIRKKVVQKCRGLP 379 (1096)
Q Consensus 346 ~lf~~~a~~~~-~~~~~~~~~~~~~~i~~~~~g~P 379 (1096)
++++...-... ....+-++.++|+. .+|.|.-
T Consensus 686 ~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 686 AILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 88887773211 11223345555432 3455553
No 295
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.16 E-value=0.042 Score=60.82 Aligned_cols=82 Identities=21% Similarity=0.263 Sum_probs=51.7
Q ss_pred CCccccchHHHHHHHHHHhcC--------C-CCCCCceEEEEEcCCCCcHHHHHHHHhcccccc--ccCcEEEEEe-cCc
Q 043647 177 EPAVFGRDEDKAKILEMVLRD--------E-PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE--MFNLRSWVCV-SDD 244 (1096)
Q Consensus 177 ~~~~vgr~~~~~~l~~~L~~~--------~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~f~~~~wv~~-~~~ 244 (1096)
...++|.++.+..+..++... . ......+.|.++|+.|+|||++|+.+....... +++...|... -..
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG 93 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCccc
Confidence 345889999998888777531 0 001124678999999999999999998765433 4444423321 122
Q ss_pred cChHHHHHHHHHhc
Q 043647 245 FDILRITKSILESI 258 (1096)
Q Consensus 245 ~~~~~~~~~i~~~l 258 (1096)
.+...+.+.+....
T Consensus 94 ~d~e~~ir~L~~~A 107 (443)
T PRK05201 94 RDVESIIRDLVEIA 107 (443)
T ss_pred CCHHHHHHHHHHHH
Confidence 35556666665544
No 296
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.15 E-value=0.052 Score=58.71 Aligned_cols=85 Identities=21% Similarity=0.159 Sum_probs=54.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCC-----CCCCcHHHHHHHHH
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSP-----NSLKDLNQIQVQLR 276 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 276 (1096)
..-+++-|+|++|+||||||..+...... .-..++||+..+.++.. .+++++... ......++....+.
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~-~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQK-AGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34679999999999999999887764322 23457788776655543 344444321 12234455555555
Q ss_pred HHhC-CCcEEEEEecCC
Q 043647 277 EAVA-GKRFLIVLDDVW 292 (1096)
Q Consensus 277 ~~l~-~kr~LlVlDdv~ 292 (1096)
...+ +..-+||+|.|.
T Consensus 127 ~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHhhccCCcEEEEcchh
Confidence 5443 456789999984
No 297
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.14 E-value=0.031 Score=55.19 Aligned_cols=29 Identities=31% Similarity=0.435 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccC
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDKAVEMFN 234 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~~~f~ 234 (1096)
.|.|.|.+|+||||+|+.+.+....-|.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hls 30 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLD 30 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 47899999999999999999874433554
No 298
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.14 E-value=0.15 Score=54.96 Aligned_cols=52 Identities=23% Similarity=0.218 Sum_probs=36.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
-.++.|.|.+|+||||+|.++.......+-..++|++... +..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 3588999999999999998887654332234678887655 345566655544
No 299
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.12 E-value=0.14 Score=57.10 Aligned_cols=89 Identities=11% Similarity=0.173 Sum_probs=53.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcccccc---ccCcEEEEEecCccC--hHHHHHHHHHhccCCCCCCCcHHHHHHHHHH
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVE---MFNLRSWVCVSDDFD--ILRITKSILESITFSPNSLKDLNQIQVQLRE 277 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 277 (1096)
..++|.++|+.|+||||.+..++...... .-..+..|++. .+. ...-++..++.++..-....+.+.+...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 35799999999999999998887654321 11234445443 332 2333556666665543333445555555544
Q ss_pred HhCCCcEEEEEecCCCC
Q 043647 278 AVAGKRFLIVLDDVWSK 294 (1096)
Q Consensus 278 ~l~~kr~LlVlDdv~~~ 294 (1096)
. .+.-+|++|.+...
T Consensus 252 ~--~~~DlVLIDTaGr~ 266 (388)
T PRK12723 252 S--KDFDLVLVDTIGKS 266 (388)
T ss_pred h--CCCCEEEEcCCCCC
Confidence 3 44568889988543
No 300
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.11 E-value=0.12 Score=49.71 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
+|.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999888753
No 301
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.11 E-value=0.034 Score=55.66 Aligned_cols=78 Identities=23% Similarity=0.279 Sum_probs=44.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhcc--CCCCCCCcHHHHHHHHHHHh
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESIT--FSPNSLKDLNQIQVQLREAV 279 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~~~l 279 (1096)
.++.+|+|.|.+|+||||+|+.++...... .+.-++...-+. ..-.....+... -......|.+-+...|...+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~---~~~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~ 81 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE---KVVVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLK 81 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC---cceEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHHH
Confidence 356899999999999999999999853321 111111111111 111111111111 11234567778888888888
Q ss_pred CCCc
Q 043647 280 AGKR 283 (1096)
Q Consensus 280 ~~kr 283 (1096)
+|++
T Consensus 82 ~g~~ 85 (218)
T COG0572 82 QGKP 85 (218)
T ss_pred cCCc
Confidence 8887
No 302
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.10 E-value=0.04 Score=55.94 Aligned_cols=111 Identities=14% Similarity=0.166 Sum_probs=59.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChH-HHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDIL-RITKSILESITFSPNSLKDLNQIQVQLREAVAGKR 283 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 283 (1096)
++|.|+|+.|.||||+++.+...... .....+++ +.++.... .-...+..+-. ...+.......++..++...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~-~~~~~i~t-~e~~~E~~~~~~~~~i~q~~----vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK-NKTHHILT-IEDPIEFVHESKRSLINQRE----VGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh-cCCcEEEE-EcCCccccccCccceeeecc----cCCCccCHHHHHHHHhcCCc
Confidence 47899999999999999887664321 22333333 22221100 00001111100 01112234556777777777
Q ss_pred EEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchhhhh
Q 043647 284 FLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTDVAL 326 (1096)
Q Consensus 284 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 326 (1096)
=.+++|++.+. +.+....... ..|-.++.|+-..++..
T Consensus 76 d~ii~gEird~--e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 76 DVILVGEMRDL--ETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CEEEEcCCCCH--HHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 89999999543 4444433322 24556788877665543
No 303
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.09 E-value=0.11 Score=50.81 Aligned_cols=132 Identities=16% Similarity=0.166 Sum_probs=65.1
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhcc
Q 043647 180 VFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESIT 259 (1096)
Q Consensus 180 ~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 259 (1096)
++|....+.++++.+..-.. .. .-|.|+|..|+||+.+|+.+++..... -..-+-|+++ ..+.+.+-.++.-...
T Consensus 1 liG~s~~m~~~~~~~~~~a~--~~-~pVlI~GE~GtGK~~lA~~IH~~s~r~-~~pfi~vnc~-~~~~~~~e~~LFG~~~ 75 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS--SD-LPVLITGETGTGKELLARAIHNNSPRK-NGPFISVNCA-ALPEELLESELFGHEK 75 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT--ST-S-EEEECSTTSSHHHHHHHHHHCSTTT-TS-EEEEETT-TS-HHHHHHHHHEBCS
T ss_pred CEeCCHHHHHHHHHHHHHhC--CC-CCEEEEcCCCCcHHHHHHHHHHhhhcc-cCCeEEEehh-hhhcchhhhhhhcccc
Confidence 46888888888777644322 12 346699999999999999999843221 1122333333 2233334344443322
Q ss_pred CCCCCC-CcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCC------CC-----CCcEEEEEcCch
Q 043647 260 FSPNSL-KDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRA------GA-----SGSKILVTTCST 322 (1096)
Q Consensus 260 ~~~~~~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~------~~-----~gs~iivTtR~~ 322 (1096)
....+. ..... .+.+ -..=-|+||++..-.......+...+.. +. ...|||.||...
T Consensus 76 ~~~~~~~~~~~G---~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 76 GAFTGARSDKKG---LLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp SSSTTTSSEBEH---HHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred ccccccccccCC---ceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 211111 11111 1111 2233578899977655444444443321 11 246888888743
No 304
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.07 E-value=0.075 Score=54.82 Aligned_cols=74 Identities=16% Similarity=-0.012 Sum_probs=39.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccc-CcEEEEEecCccChHHHHHHHHHhccCC-CCCCCcHHHHHHHHHHHhC
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDKAVEMF-NLRSWVCVSDDFDILRITKSILESITFS-PNSLKDLNQIQVQLREAVA 280 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~l~~~l~ 280 (1096)
+|+|.|..|+||||+|+.+......... ..+..++...-+.......... .+... .....+.+.+...+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~-~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERG-LMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhh-hhhcCCCcccCCHHHHHHHHHHHHC
Confidence 5899999999999999988875432111 1244454444333222222221 11111 1234456666666665554
No 305
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.05 E-value=0.023 Score=55.74 Aligned_cols=80 Identities=16% Similarity=0.150 Sum_probs=42.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCC---CcHHHHHHHHHHHhCCC
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSL---KDLNQIQVQLREAVAGK 282 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~k 282 (1096)
++.|.|.+|+||||+|..+...... .++++.-... ...+..+.|.......+..- .....+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~----~~~~iat~~~-~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~- 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL----QVLYIATAQP-FDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP- 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC----CcEeCcCCCC-ChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC-
Confidence 6899999999999999888764211 2333433333 33345555544332221111 1122344445443333
Q ss_pred cEEEEEecC
Q 043647 283 RFLIVLDDV 291 (1096)
Q Consensus 283 r~LlVlDdv 291 (1096)
.-++++|.+
T Consensus 77 ~~~VlID~L 85 (170)
T PRK05800 77 GRCVLVDCL 85 (170)
T ss_pred CCEEEehhH
Confidence 236888986
No 306
>PRK10867 signal recognition particle protein; Provisional
Probab=95.05 E-value=0.11 Score=59.05 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+.+|.++|.+|+||||.|..++..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999988666653
No 307
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.02 E-value=0.057 Score=58.45 Aligned_cols=85 Identities=22% Similarity=0.176 Sum_probs=53.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCC-----CCCCcHHHHHHHHH
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSP-----NSLKDLNQIQVQLR 276 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 276 (1096)
+.-+++-|+|++|+||||||..++..... .-..++||+....++.. .+.+++... ....+.++....+.
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~~~-~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQK-LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 34578999999999999999887754322 33567898877666643 334443321 12234455555555
Q ss_pred HHhC-CCcEEEEEecCC
Q 043647 277 EAVA-GKRFLIVLDDVW 292 (1096)
Q Consensus 277 ~~l~-~kr~LlVlDdv~ 292 (1096)
...+ +.--+||+|-|-
T Consensus 127 ~li~s~~~~lIVIDSva 143 (325)
T cd00983 127 SLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHhccCCCEEEEcchH
Confidence 5443 456689999873
No 308
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.01 E-value=0.025 Score=58.51 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
.|.|.|++|+||||+|+.+.+..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998753
No 309
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.00 E-value=0.055 Score=59.90 Aligned_cols=81 Identities=19% Similarity=0.253 Sum_probs=49.9
Q ss_pred CccccchHHHHHHHHHHhcC--------C-CCCCCceEEEEEcCCCCcHHHHHHHHhcccccc--ccCcEEEEEec-Ccc
Q 043647 178 PAVFGRDEDKAKILEMVLRD--------E-PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE--MFNLRSWVCVS-DDF 245 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~--------~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~f~~~~wv~~~-~~~ 245 (1096)
..++|.++.+..+...+... + ......+.|.++|++|+|||++|+.+....... ..+..-++..+ ...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 45788888888887666531 0 011124678999999999999999998865443 33433232221 223
Q ss_pred ChHHHHHHHHHhc
Q 043647 246 DILRITKSILESI 258 (1096)
Q Consensus 246 ~~~~~~~~i~~~l 258 (1096)
+...+++.+....
T Consensus 92 dvE~i~r~l~e~A 104 (441)
T TIGR00390 92 DVESMVRDLTDAA 104 (441)
T ss_pred CHHHHHHHHHHHH
Confidence 5556666655443
No 310
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.97 E-value=0.084 Score=55.45 Aligned_cols=87 Identities=18% Similarity=0.122 Sum_probs=53.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCC-------------------
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSP------------------- 262 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------------- 262 (1096)
..-.++.|+|.+|+|||++|.++...... .=..++|++..+. ..++.+++ .+++...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 34578999999999999999888654221 2346788887654 34454443 2232110
Q ss_pred -CCCCcHHHHHHHHHHHhCC-CcEEEEEecCC
Q 043647 263 -NSLKDLNQIQVQLREAVAG-KRFLIVLDDVW 292 (1096)
Q Consensus 263 -~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 292 (1096)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666643 55689999974
No 311
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.96 E-value=0.073 Score=60.82 Aligned_cols=88 Identities=16% Similarity=0.090 Sum_probs=46.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccc-cCcEEEEEecC-ccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhC
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVEM-FNLRSWVCVSD-DFDILRITKSILESITFSPNSLKDLNQIQVQLREAVA 280 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 280 (1096)
..++|+|+|++|+||||++..+......++ ...+..++... .....+.++.....++..-....+...+...+++ +.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-LR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-hc
Confidence 357999999999999999988776432221 23344554422 1112222333333333322222333444444443 33
Q ss_pred CCcEEEEEecCC
Q 043647 281 GKRFLIVLDDVW 292 (1096)
Q Consensus 281 ~kr~LlVlDdv~ 292 (1096)
..=+|++|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 34578888874
No 312
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.95 E-value=0.021 Score=65.25 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=39.0
Q ss_pred ccccchHHHHHHHHHHhcCC-CCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 179 AVFGRDEDKAKILEMVLRDE-PTDANFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
+++|.++.+++|++.|.... ....+-+++.++|++|+||||||+.+.+-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 58999999999999883221 01234579999999999999999998874
No 313
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.94 E-value=0.19 Score=51.95 Aligned_cols=121 Identities=20% Similarity=0.268 Sum_probs=69.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcccc-----cccc----------CcEEEEEecC------ccCh----------------
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKA-----VEMF----------NLRSWVCVSD------DFDI---------------- 247 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~-----~~~f----------~~~~wv~~~~------~~~~---------------- 247 (1096)
.+++|+|+.|.|||||.+.+.--.. +..| ..+.||.=.. +.++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6899999999999999999987211 1111 2355653111 1111
Q ss_pred ------HHHHHHHHHhccCCCC-----CCCcHHHHH-HHHHHHhCCCcEEEEEecCCC----CChhhHHHhhcccCCCCC
Q 043647 248 ------LRITKSILESITFSPN-----SLKDLNQIQ-VQLREAVAGKRFLIVLDDVWS----KNYSLWNTLKSPFRAGAS 311 (1096)
Q Consensus 248 ------~~~~~~i~~~l~~~~~-----~~~~~~~~~-~~l~~~l~~kr~LlVlDdv~~----~~~~~~~~l~~~l~~~~~ 311 (1096)
++...+.+++++.... ..-+-.+.+ ..+.+.|..+.=|++||.--. ......-.+...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 2444555555554321 111122333 345677888999999997432 2222333344444333
Q ss_pred CcEEEEEcCchhhhhh
Q 043647 312 GSKILVTTCSTDVALT 327 (1096)
Q Consensus 312 gs~iivTtR~~~v~~~ 327 (1096)
|..||++|-+-+....
T Consensus 189 g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 189 GKTVLMVTHDLGLVMA 204 (254)
T ss_pred CCEEEEEeCCcHHhHh
Confidence 8899999988766544
No 314
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.049 Score=62.71 Aligned_cols=73 Identities=27% Similarity=0.264 Sum_probs=48.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCcc--ChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhC
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDF--DILRITKSILESITFSPNSLKDLNQIQVQLREAVA 280 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 280 (1096)
...-|.|.|+.|+|||+||+++++.......-.+..|+++.-. ..+.+++. +...+.+.+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~-----------------l~~vfse~~~ 492 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKF-----------------LNNVFSEALW 492 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHH-----------------HHHHHHHHHh
Confidence 3567899999999999999999987663355556666665421 12222211 1223344566
Q ss_pred CCcEEEEEecCC
Q 043647 281 GKRFLIVLDDVW 292 (1096)
Q Consensus 281 ~kr~LlVlDdv~ 292 (1096)
..+-+|||||++
T Consensus 493 ~~PSiIvLDdld 504 (952)
T KOG0735|consen 493 YAPSIIVLDDLD 504 (952)
T ss_pred hCCcEEEEcchh
Confidence 789999999995
No 315
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.93 E-value=0.12 Score=51.20 Aligned_cols=119 Identities=22% Similarity=0.240 Sum_probs=57.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecC--ccChHHHHHHHHHhccCCCC--C-------CCcHHHHHH
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSD--DFDILRITKSILESITFSPN--S-------LKDLNQIQV 273 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~--~-------~~~~~~~~~ 273 (1096)
.+++|+|..|.|||||++.+...... ....+++.-.. ........+.+.- +..... . ...-+...-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~-~~q~~~~~~~tv~~~lLS~G~~qrv 105 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLRP--TSGRVRLDGADISQWDPNELGDHVGY-LPQDDELFSGSIAENILSGGQRQRL 105 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEEcccCCHHHHHhheEE-ECCCCccccCcHHHHCcCHHHHHHH
Confidence 58999999999999999999864321 12222221100 0111111111100 000000 0 011111222
Q ss_pred HHHHHhCCCcEEEEEecCCCC-ChhhHHHhhcccCC-CCCCcEEEEEcCchhhhh
Q 043647 274 QLREAVAGKRFLIVLDDVWSK-NYSLWNTLKSPFRA-GASGSKILVTTCSTDVAL 326 (1096)
Q Consensus 274 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtR~~~v~~ 326 (1096)
.+...+..++=++++|+.... +....+.+...+.. ...|..||++|.+.+...
T Consensus 106 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 106 GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 344445566678899987532 22223333333322 123677888888877654
No 316
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.92 E-value=0.033 Score=53.29 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
+|.++|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998853
No 317
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.87 E-value=0.16 Score=57.57 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+.++.++|.+|+||||.|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999998777654
No 318
>PTZ00301 uridine kinase; Provisional
Probab=94.87 E-value=0.045 Score=55.69 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..+|+|.|.+|+||||+|+.+.+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 479999999999999999888754
No 319
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.46 Score=57.09 Aligned_cols=154 Identities=16% Similarity=0.194 Sum_probs=81.6
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc----c-cCcEEEEEecCccChHHHHHH
Q 043647 179 AVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE----M-FNLRSWVCVSDDFDILRITKS 253 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~-f~~~~wv~~~~~~~~~~~~~~ 253 (1096)
.++||++|+.++++.|.....++ -.++|.+|+|||++|.-++...... . -+..++. . +
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNN-----PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-L-----------D 233 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNN-----PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-L-----------D 233 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCC-----CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-e-----------c
Confidence 47899999999999997654322 3578999999999986555432111 0 0111111 0 0
Q ss_pred HHHhccCCCCCCCcHHHHHHHHHHHh-CCCcEEEEEecCCCCC---------hhhHHHhhcccCCCCCCcEEEEEcCchh
Q 043647 254 ILESITFSPNSLKDLNQIQVQLREAV-AGKRFLIVLDDVWSKN---------YSLWNTLKSPFRAGASGSKILVTTCSTD 323 (1096)
Q Consensus 254 i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~iivTtR~~~ 323 (1096)
+..-+.+. .-..+.++....+-+.+ +.++..+++|.+...- .+.-.-+..+|..+ . -++|-.|...+
T Consensus 234 ~g~LvAGa-kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-e-L~~IGATT~~E 310 (786)
T COG0542 234 LGSLVAGA-KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-E-LRCIGATTLDE 310 (786)
T ss_pred HHHHhccc-cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-C-eEEEEeccHHH
Confidence 11111111 11234444444444333 4558999999986420 11222233333222 1 24444443333
Q ss_pred hhhhc-------CCcceeeCCCCChHhHHHHHHHhh
Q 043647 324 VALTV-------GTAEYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 324 v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 352 (1096)
--..+ ...+.+.+..-+.+++..++.-..
T Consensus 311 YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 311 YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 22222 223578888889999888886544
No 320
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.86 E-value=0.26 Score=48.80 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=70.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEe-------------------cCcc-------------------
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCV-------------------SDDF------------------- 245 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~-------------------~~~~------------------- 245 (1096)
-.|++|+|+.|.|||||.+.+..=.... .+.+||.- -+.|
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~~--~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v 105 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEPD--SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV 105 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCCC--CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH
Confidence 3589999999999999998887533221 23334321 1111
Q ss_pred ------ChHHHHHHHHHhccCCCC------CCCcHHHHHHHHHHHhCCCcEEEEEecCCCC-ChhhHHHhhcccCC-CCC
Q 043647 246 ------DILRITKSILESITFSPN------SLKDLNQIQVQLREAVAGKRFLIVLDDVWSK-NYSLWNTLKSPFRA-GAS 311 (1096)
Q Consensus 246 ------~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~ 311 (1096)
..++...++++.++..+. ....-++-.-.|.+.|.-++-++.+|..-+. +.+...++...... ...
T Consensus 106 ~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e 185 (240)
T COG1126 106 KKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185 (240)
T ss_pred cCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc
Confidence 233444455555554321 1222233344567777778888999998553 22333333333222 234
Q ss_pred CcEEEEEcCchhhhhhcC
Q 043647 312 GSKILVTTCSTDVALTVG 329 (1096)
Q Consensus 312 gs~iivTtR~~~v~~~~~ 329 (1096)
|-..|+.|.+...|..+.
T Consensus 186 GmTMivVTHEM~FAr~Va 203 (240)
T COG1126 186 GMTMIIVTHEMGFAREVA 203 (240)
T ss_pred CCeEEEEechhHHHHHhh
Confidence 667777788887776653
No 321
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.84 E-value=0.2 Score=52.80 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
+..|+|++|+|||+||..++..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5679999999999999887753
No 322
>PRK09354 recA recombinase A; Provisional
Probab=94.83 E-value=0.075 Score=58.00 Aligned_cols=85 Identities=21% Similarity=0.160 Sum_probs=55.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCC-----CCCCcHHHHHHHHH
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSP-----NSLKDLNQIQVQLR 276 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 276 (1096)
..-+++-|+|++|+||||||.++...... .-..++||.....++.. .+++++... ......++....+.
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~~~-~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEAQK-AGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34679999999999999999887754322 33567898887766652 344444321 12234455555555
Q ss_pred HHhC-CCcEEEEEecCC
Q 043647 277 EAVA-GKRFLIVLDDVW 292 (1096)
Q Consensus 277 ~~l~-~kr~LlVlDdv~ 292 (1096)
..++ ++--+||+|-|-
T Consensus 132 ~li~s~~~~lIVIDSva 148 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHhhcCCCCEEEEeChh
Confidence 5543 456689999984
No 323
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.83 E-value=0.23 Score=54.45 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=55.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCc-cChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHh-C
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDD-FDILRITKSILESITFSPNSLKDLNQIQVQLREAV-A 280 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~ 280 (1096)
..++++|+|+.|+||||++..++.....+. ..+.+|++... ....+-++..++.++.......+..++...+...- .
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN-RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 468999999999999999988876432222 34666665432 22344555566665543333345566655554432 1
Q ss_pred CCcEEEEEecCCC
Q 043647 281 GKRFLIVLDDVWS 293 (1096)
Q Consensus 281 ~kr~LlVlDdv~~ 293 (1096)
+..=+|++|-.-.
T Consensus 284 ~~~D~VLIDTAGr 296 (407)
T PRK12726 284 NCVDHILIDTVGR 296 (407)
T ss_pred CCCCEEEEECCCC
Confidence 3456788898754
No 324
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.81 E-value=0.14 Score=54.82 Aligned_cols=81 Identities=17% Similarity=0.081 Sum_probs=43.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHHHHhcc-CCCCCCCcHHHHHHHHHHHh
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSILESIT-FSPNSLKDLNQIQVQLREAV 279 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~l~~~l 279 (1096)
....+|+|.|..|+||||+|+.+..-.... .-..+..++...-....+.....- ... ....+..+.+.+...+...-
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g-~~~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERN-LMKKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcC-CccccCCChhccHHHHHHHHHHHH
Confidence 456899999999999999997665422110 011244444433332223222211 000 01124456677777777666
Q ss_pred CCCc
Q 043647 280 AGKR 283 (1096)
Q Consensus 280 ~~kr 283 (1096)
.|+.
T Consensus 139 ~g~~ 142 (290)
T TIGR00554 139 SGKP 142 (290)
T ss_pred CCCC
Confidence 6553
No 325
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.80 E-value=0.1 Score=52.95 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCCcEEEEEecCCC-CChhhHHHhhcccCC--CCCCcEEEEEcCchhhhhhcC
Q 043647 269 NQIQVQLREAVAGKRFLIVLDDVWS-KNYSLWNTLKSPFRA--GASGSKILVTTCSTDVALTVG 329 (1096)
Q Consensus 269 ~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~~~ 329 (1096)
++-.-.+.+.+-..+-+|+-|+--. -+...-+.+...+.. ...|..||+.|.++.+|..++
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 3334456677778888889886421 122222333333332 234789999999999998643
No 326
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.80 E-value=0.19 Score=49.84 Aligned_cols=118 Identities=19% Similarity=0.145 Sum_probs=60.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccC--CCC---C---------CCcHHH
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITF--SPN---S---------LKDLNQ 270 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--~~~---~---------~~~~~~ 270 (1096)
.+++|+|..|.|||||++.++..... ....+++.-....+.. ..+...+.. +.. . ...-+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~ 101 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGMK 101 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHHH
Confidence 58999999999999999999875321 2233332110000000 011111110 000 0 011111
Q ss_pred HHHHHHHHhCCCcEEEEEecCCCC-ChhhHHHhhcccCCC-CCCcEEEEEcCchhhhhh
Q 043647 271 IQVQLREAVAGKRFLIVLDDVWSK-NYSLWNTLKSPFRAG-ASGSKILVTTCSTDVALT 327 (1096)
Q Consensus 271 ~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~ 327 (1096)
..-.+...+..++=++++|+.-.. +....+.+...+... ..|..||++|.+......
T Consensus 102 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 102 QRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 222355566677888999987443 222333333333321 236788999988776543
No 327
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.80 E-value=0.1 Score=57.50 Aligned_cols=56 Identities=18% Similarity=0.202 Sum_probs=40.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcccccc-c----cCcEEEEEecCccChHHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVE-M----FNLRSWVCVSDDFDILRITKSILESIT 259 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~----f~~~~wv~~~~~~~~~~~~~~i~~~l~ 259 (1096)
.-.++-|+|++|+|||++|.+++...... . -..++||+....+++.++.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 45789999999999999998887543221 1 14789999988888777654 444443
No 328
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.80 E-value=0.051 Score=55.79 Aligned_cols=121 Identities=11% Similarity=0.050 Sum_probs=58.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCC---CCcHHHHHHHHHH--H
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNS---LKDLNQIQVQLRE--A 278 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~--~ 278 (1096)
.+++.|+|+.|.||||+.+.+.......+-....| +.. .. .....++...+.....- ......-...+.. .
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~--a~~-~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~ 104 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVP--ADS-AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALR 104 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeE--cCC-cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHH
Confidence 47899999999999999988874211111111111 110 00 01112222222222110 0111111111221 2
Q ss_pred hCCCcEEEEEecCCCCC-hhhHH----HhhcccCCC-CCCcEEEEEcCchhhhhhc
Q 043647 279 VAGKRFLIVLDDVWSKN-YSLWN----TLKSPFRAG-ASGSKILVTTCSTDVALTV 328 (1096)
Q Consensus 279 l~~kr~LlVlDdv~~~~-~~~~~----~l~~~l~~~-~~gs~iivTtR~~~v~~~~ 328 (1096)
+..++.|++||...... ..+.. .+...+... ..+..+|+||...+.+...
T Consensus 105 ~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 105 LATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred hCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 34778999999986532 11111 222233222 2345899999998887654
No 329
>PRK05439 pantothenate kinase; Provisional
Probab=94.75 E-value=0.17 Score=54.51 Aligned_cols=80 Identities=18% Similarity=0.072 Sum_probs=44.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHH--HHHhccCCCCCCCcHHHHHHHHHHH
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKS--ILESITFSPNSLKDLNQIQVQLREA 278 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~--i~~~l~~~~~~~~~~~~~~~~l~~~ 278 (1096)
+..-+|+|.|.+|+||||+|+.+..-.... .-..+.-++...-+...+.+.. ++..-+ ..+.-|.+.+...+...
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg--~Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKG--FPESYDMRALLRFLSDV 161 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCC--CcccccHHHHHHHHHHH
Confidence 457899999999999999998887632211 1122334444333322222221 111111 12345677777777777
Q ss_pred hCCCc
Q 043647 279 VAGKR 283 (1096)
Q Consensus 279 l~~kr 283 (1096)
.+|+.
T Consensus 162 k~G~~ 166 (311)
T PRK05439 162 KSGKP 166 (311)
T ss_pred HcCCC
Confidence 66665
No 330
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.75 E-value=0.15 Score=52.00 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998875
No 331
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.75 E-value=0.22 Score=53.18 Aligned_cols=90 Identities=16% Similarity=0.105 Sum_probs=48.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccCh--HHHHHHHHHhccCCC---CCCCcHHH-HHHHH
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDI--LRITKSILESITFSP---NSLKDLNQ-IQVQL 275 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~---~~~~~~~~-~~~~l 275 (1096)
.+.++|.++|++|+||||++..++....... ..+.++.+. .+.. .+-+....+..+..- ....+... ....+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g-~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQG-KSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC-CEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 3568999999999999999988876443222 245555543 2322 223333444444221 11122222 23334
Q ss_pred HHHhCCCcEEEEEecCCC
Q 043647 276 REAVAGKRFLIVLDDVWS 293 (1096)
Q Consensus 276 ~~~l~~kr~LlVlDdv~~ 293 (1096)
.....+..=++++|-.-.
T Consensus 148 ~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHCCCCEEEEeCCCC
Confidence 444444456788887743
No 332
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.26 Score=58.27 Aligned_cols=133 Identities=17% Similarity=0.138 Sum_probs=75.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCC
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAG 281 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 281 (1096)
...+.+-++|++|.|||.||+++++.... .| +.+... +++.. .-......+........+.
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~-~f-----i~v~~~--------~l~sk-----~vGesek~ir~~F~~A~~~ 334 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRS-RF-----ISVKGS--------ELLSK-----WVGESEKNIRELFEKARKL 334 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCC-eE-----EEeeCH--------HHhcc-----ccchHHHHHHHHHHHHHcC
Confidence 45668999999999999999999984333 22 222111 11111 0111222333334444468
Q ss_pred CcEEEEEecCCCC------C-----hhhHHHhhcccCCCC--CCcEEEEEcCchhhhhhc-----CCcceeeCCCCChHh
Q 043647 282 KRFLIVLDDVWSK------N-----YSLWNTLKSPFRAGA--SGSKILVTTCSTDVALTV-----GTAEYYNLKLLSDDD 343 (1096)
Q Consensus 282 kr~LlVlDdv~~~------~-----~~~~~~l~~~l~~~~--~gs~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~ 343 (1096)
.++.|.+|.++.- . .....++...+.... .+..||-||-.+...... .-...+.+..-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 8999999999642 0 012333444443222 233345555444333211 113578888999999
Q ss_pred HHHHHHHhhc
Q 043647 344 CWSVFVKHAF 353 (1096)
Q Consensus 344 ~~~lf~~~a~ 353 (1096)
..+.|..+.-
T Consensus 415 r~~i~~~~~~ 424 (494)
T COG0464 415 RLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHhc
Confidence 9999998884
No 333
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.73 E-value=0.19 Score=57.31 Aligned_cols=87 Identities=16% Similarity=0.124 Sum_probs=47.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccc-ccccCcEEEEEecCcc-ChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCC
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKA-VEMFNLRSWVCVSDDF-DILRITKSILESITFSPNSLKDLNQIQVQLREAVAG 281 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 281 (1096)
.+++.++|++|+||||++..++.... ...-..+..|+....- ...+-++...+.++.......+.+++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 36899999999999999877765443 2222345566543211 112223333333443322233444555555442 3
Q ss_pred CcEEEEEecCC
Q 043647 282 KRFLIVLDDVW 292 (1096)
Q Consensus 282 kr~LlVlDdv~ 292 (1096)
..=+|++|..-
T Consensus 299 ~~DlVlIDt~G 309 (424)
T PRK05703 299 DCDVILIDTAG 309 (424)
T ss_pred CCCEEEEeCCC
Confidence 35678889664
No 334
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.72 E-value=0.066 Score=53.31 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
..+|+|+|++|+||||+|+.+....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999998754
No 335
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.70 E-value=0.12 Score=53.50 Aligned_cols=126 Identities=21% Similarity=0.198 Sum_probs=73.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccc---c-ccCcEEEEEecCccChHHHHHHHHHhccCCCC------CCCcHHHHH-
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAV---E-MFNLRSWVCVSDDFDILRITKSILESITFSPN------SLKDLNQIQ- 272 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~- 272 (1096)
-.+++|||..|.||||+++.+..=... + .|+..-+...+ .....+-..++++.++.... ..-+-.+.+
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR 117 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR 117 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence 458999999999999999999874321 1 33332222122 22344556667777664431 011122333
Q ss_pred HHHHHHhCCCcEEEEEecCCCCC-hhhHHHhhcccCC--CCCCcEEEEEcCchhhhhhcCC
Q 043647 273 VQLREAVAGKRFLIVLDDVWSKN-YSLWNTLKSPFRA--GASGSKILVTTCSTDVALTVGT 330 (1096)
Q Consensus 273 ~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~~~~ 330 (1096)
-.+.+.+.-+.-++|.|..-+.- ...-.++...+.. ...|-..+..|-+-.++..+..
T Consensus 118 i~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 118 IGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred HHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 24667788899999999875431 1112233333322 2346778888888888877654
No 336
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.66 E-value=0.22 Score=51.17 Aligned_cols=61 Identities=18% Similarity=0.117 Sum_probs=35.5
Q ss_pred HHHHhCCCcEEEEEecCCCC-ChhhHHHhhcccCC-CCCCcEEEEEcCchhhhhhcCCcceeeCCC
Q 043647 275 LREAVAGKRFLIVLDDVWSK-NYSLWNTLKSPFRA-GASGSKILVTTCSTDVALTVGTAEYYNLKL 338 (1096)
Q Consensus 275 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtR~~~v~~~~~~~~~~~l~~ 338 (1096)
+...+..++-++++|+--.. +....+.+...+.. ...|..||++|.+...... ..++.++.
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~ 200 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGP 200 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecC
Confidence 34445566789999987432 22334444444432 1246778888888766543 55666654
No 337
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.63 E-value=0.083 Score=53.69 Aligned_cols=118 Identities=15% Similarity=0.123 Sum_probs=61.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCc-------HHHHHHHHH
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKD-------LNQIQVQLR 276 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~-------~~~~~~~l~ 276 (1096)
.+++.|.|+.|.||||+.+.+..-....+. ..+|.+.. ..-.+...|...++..+..... ..++...+.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~--G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~ 104 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQI--GCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILD 104 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHc--CCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHHHH
Confidence 378999999999999999888643211111 11221111 1112333444444333211111 122211111
Q ss_pred HHhCCCcEEEEEecCCCCC-hhh----HHHhhcccCCCCCCcEEEEEcCchhhhhhcC
Q 043647 277 EAVAGKRFLIVLDDVWSKN-YSL----WNTLKSPFRAGASGSKILVTTCSTDVALTVG 329 (1096)
Q Consensus 277 ~~l~~kr~LlVlDdv~~~~-~~~----~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~ 329 (1096)
+..++-|+++|...... ..+ ...+...+.. .|..+|++|-..+++..+.
T Consensus 105 --~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 105 --YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred --hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 24668899999974421 122 1122333332 3789999999998887654
No 338
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=2.5 Score=47.06 Aligned_cols=152 Identities=7% Similarity=0.012 Sum_probs=77.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKR 283 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 283 (1096)
-|=-.++|++|.|||+++.++++... ||. .=...+...+-.+ ++.++.. ...+
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~---ydI-ydLeLt~v~~n~d-Lr~LL~~----------------------t~~k 287 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLN---YDI-YDLELTEVKLDSD-LRHLLLA----------------------TPNK 287 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcC---Cce-EEeeeccccCcHH-HHHHHHh----------------------CCCC
Confidence 35567999999999999999998542 221 1112222111111 2222221 2345
Q ss_pred EEEEEecCCCCC------h------------hhHHHhhcccC---CCCCCcEE-EEEcCchhhhhh--cC---CcceeeC
Q 043647 284 FLIVLDDVWSKN------Y------------SLWNTLKSPFR---AGASGSKI-LVTTCSTDVALT--VG---TAEYYNL 336 (1096)
Q Consensus 284 ~LlVlDdv~~~~------~------------~~~~~l~~~l~---~~~~gs~i-ivTtR~~~v~~~--~~---~~~~~~l 336 (1096)
-+||+.|++-.- . ..+.-++..+. ....+-|| +.||-..+-... +. .+..+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 566666664210 0 01111222221 11112355 456654433211 12 2235778
Q ss_pred CCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHHHHh
Q 043647 337 KLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGGLL 389 (1096)
Q Consensus 337 ~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 389 (1096)
.--+.+....||.++..... ...++.+|.+...|.-+.-..+|..|
T Consensus 368 gyCtf~~fK~La~nYL~~~~-------~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEE-------DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCC-------CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 88888888999988874322 22455666666666655555555554
No 339
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.44 Score=47.73 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=38.2
Q ss_pred HHHHHHhCCCcEEEEEecCCCC-ChhhHHHhhcccCC-CCCCcEEEEEcCchhhhhhcCCccee
Q 043647 273 VQLREAVAGKRFLIVLDDVWSK-NYSLWNTLKSPFRA-GASGSKILVTTCSTDVALTVGTAEYY 334 (1096)
Q Consensus 273 ~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtR~~~v~~~~~~~~~~ 334 (1096)
..+.+.+-=++-+.|||..++- +.+..+.+...+.. ...|+.+||.|..+.++....++.+|
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 3445555556779999998764 22333333222221 23477888999999999888665544
No 340
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.59 E-value=0.54 Score=49.19 Aligned_cols=98 Identities=18% Similarity=0.204 Sum_probs=68.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcE
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKRF 284 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 284 (1096)
+.+.++|+.|+|||+-++.+++.. ....-+..+..++...+...+.......... ........+...+++..-
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s~-----p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~~--~~~d~~~~~~~~l~~~~~ 167 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPSN-----PNALLIEADPSYTALVLILIICAAAFGATDG--TINDLTERLMIRLRDTVR 167 (297)
T ss_pred ceEEEeccccchhHHHHHhhcccC-----ccceeecCChhhHHHHHHHHHHHHHhcccch--hHHHHHHHHHHHHccCcc
Confidence 488999999999999999998753 2233345566667777777776666554332 233445556666688899
Q ss_pred EEEEecCCCCChhhHHHhhcccCCC
Q 043647 285 LIVLDDVWSKNYSLWNTLKSPFRAG 309 (1096)
Q Consensus 285 LlVlDdv~~~~~~~~~~l~~~l~~~ 309 (1096)
+++.|+...-....++.+.......
T Consensus 168 ~iivDEA~~L~~~ale~lr~i~d~~ 192 (297)
T COG2842 168 LIIVDEADRLPYRALEELRRIHDKT 192 (297)
T ss_pred eeeeehhhccChHHHHHHHHHHHhh
Confidence 9999999877777777777655443
No 341
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.50 E-value=0.15 Score=56.12 Aligned_cols=57 Identities=19% Similarity=0.140 Sum_probs=41.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcccccc-----ccCcEEEEEecCccChHHHHHHHHHhccC
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVE-----MFNLRSWVCVSDDFDILRITKSILESITF 260 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 260 (1096)
.-.++-|+|.+|+|||++|..++-..... .-..++||+....++++++ .++++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 45788999999999999998776432211 1136899999998888776 455666554
No 342
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.49 E-value=0.1 Score=53.08 Aligned_cols=84 Identities=18% Similarity=0.309 Sum_probs=52.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCc-cChHHHHHHHHHhccCC-------CCCCCcHHH-----H
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDD-FDILRITKSILESITFS-------PNSLKDLNQ-----I 271 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~-----~ 271 (1096)
.-++|+|.+|+|||+|+..+.++.. -+.++++-+++. .+..++.+++...-... ..+...... .
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~---~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~ 92 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD---ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYT 92 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT---TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc---ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhcc
Confidence 4689999999999999999988653 344577777765 45666666664431111 111110111 1
Q ss_pred HHHHHHHh--CCCcEEEEEecC
Q 043647 272 QVQLREAV--AGKRFLIVLDDV 291 (1096)
Q Consensus 272 ~~~l~~~l--~~kr~LlVlDdv 291 (1096)
...+.+++ +++.+|+++||+
T Consensus 93 a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 93 ALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHTTSEEEEEEETH
T ss_pred chhhhHHHhhcCCceeehhhhh
Confidence 11223333 699999999998
No 343
>PRK07667 uridine kinase; Provisional
Probab=94.48 E-value=0.048 Score=55.16 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 187 KAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 187 ~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
.+.|.+.+.... +...+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~---~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHK---ENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcC---CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 455666664332 345899999999999999998888753
No 344
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.47 E-value=0.26 Score=59.42 Aligned_cols=86 Identities=20% Similarity=0.259 Sum_probs=49.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccc-cCcEEEEEecCccC--hHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhC
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEM-FNLRSWVCVSDDFD--ILRITKSILESITFSPNSLKDLNQIQVQLREAVA 280 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 280 (1096)
.+||+++|+.|+||||.+..+.......+ ...+..+... .+. ..+-++...+.++.......+.+++...+.+ ++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hc
Confidence 47999999999999999988886543222 2345555432 222 3444555555555443333445555444443 33
Q ss_pred CCcEEEEEecCC
Q 043647 281 GKRFLIVLDDVW 292 (1096)
Q Consensus 281 ~kr~LlVlDdv~ 292 (1096)
++. +|++|=.-
T Consensus 263 ~~D-~VLIDTAG 273 (767)
T PRK14723 263 DKH-LVLIDTVG 273 (767)
T ss_pred CCC-EEEEeCCC
Confidence 332 56666554
No 345
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.46 E-value=0.025 Score=52.96 Aligned_cols=21 Identities=43% Similarity=0.637 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 043647 207 IPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~ 227 (1096)
|.|.|+.|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998875
No 346
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.45 E-value=0.14 Score=56.29 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=40.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcccccc-----ccCcEEEEEecCccChHHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVE-----MFNLRSWVCVSDDFDILRITKSILESIT 259 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 259 (1096)
.-.++-|+|.+|+||||+|.+++...... .-..++||+....++..++. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 45789999999999999998887553321 11378999998888877654 4455444
No 347
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.45 E-value=0.18 Score=55.34 Aligned_cols=59 Identities=19% Similarity=0.146 Sum_probs=42.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccc----c-ccCcEEEEEecCccChHHHHHHHHHhccCC
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAV----E-MFNLRSWVCVSDDFDILRITKSILESITFS 261 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 261 (1096)
..-.++-|+|.+|+|||+|+..++-.... . .-..++||+....|+++++.+ +++.++..
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 34578889999999999999877533221 1 124689999998888887655 56665543
No 348
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.45 E-value=0.13 Score=52.22 Aligned_cols=102 Identities=23% Similarity=0.266 Sum_probs=57.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEE-------EEEecCccChHHH--HHHHHHhccCCCCCC------
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRS-------WVCVSDDFDILRI--TKSILESITFSPNSL------ 265 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~-------wv~~~~~~~~~~~--~~~i~~~l~~~~~~~------ 265 (1096)
++..+|.++||+|.||||..+.++.....+ ....++ -+......++++. +++.+++.+..+++.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 456788999999999999999998765443 211111 1112223344443 456777766554432
Q ss_pred ---CcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCc
Q 043647 266 ---KDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGS 313 (1096)
Q Consensus 266 ---~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 313 (1096)
...+++...+.++-..-.|.| +|--.. ...|.|..+|+
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~l-iDTPGQ---------IE~FtWSAsGs 137 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVL-IDTPGQ---------IEAFTWSASGS 137 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEE-EcCCCc---------eEEEEecCCcc
Confidence 234566666666554444443 443311 33456666665
No 349
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.43 E-value=0.0023 Score=64.65 Aligned_cols=103 Identities=22% Similarity=0.231 Sum_probs=51.5
Q ss_pred CCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCc--cccCCCCCceEE
Q 043647 555 FTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPS--NLRNLINLRHLV 632 (1096)
Q Consensus 555 ~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~ 632 (1096)
+.+.+-|++.+|.++.+ ..+.+++.|++|.|+-|.|+.| ..+..+++|+.|.|+.| .|.++-+ -+.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence 34445555555555543 1223555666666666666555 23455566666666553 3444332 135566666666
Q ss_pred eccccccccCccc-----CCCCCCCCcCCceEe
Q 043647 633 VTYVDLIREMPLG-----IKELKCLQMLSNFIV 660 (1096)
Q Consensus 633 l~~~~~~~~~p~~-----i~~L~~L~~L~~~~~ 660 (1096)
|..|.....-+.. +.-|++|+.|++..+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhccCccc
Confidence 6555422222211 344566666654433
No 350
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.43 E-value=0.028 Score=45.69 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988875
No 351
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.41 E-value=0.16 Score=53.62 Aligned_cols=89 Identities=21% Similarity=0.123 Sum_probs=55.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh-ccCC-CCCCCcHHH---HHHHHH
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES-ITFS-PNSLKDLNQ---IQVQLR 276 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~-~~~~~~~~~---~~~~l~ 276 (1096)
+.-+++=|+|+.|.||||+|.+++-.... .-..++||+.-..+++..+.+ ++.. +..- .....+.++ +...+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq~-~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQK-PGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHhhc-CCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 45688999999999999999887765433 334789999988888766543 3333 2111 011222222 333333
Q ss_pred HHhCCCcEEEEEecCC
Q 043647 277 EAVAGKRFLIVLDDVW 292 (1096)
Q Consensus 277 ~~l~~kr~LlVlDdv~ 292 (1096)
.....+--|+|+|.+-
T Consensus 136 ~~~~~~i~LvVVDSva 151 (279)
T COG0468 136 RSGAEKIDLLVVDSVA 151 (279)
T ss_pred HhccCCCCEEEEecCc
Confidence 3333345688899883
No 352
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.39 E-value=0.033 Score=57.33 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
+..+|+|.|.+|+||||||+.++...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999998753
No 353
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.39 E-value=0.028 Score=55.36 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKA 229 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 229 (1096)
..+|+|-||-|+||||||+.+.+...
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999998654
No 354
>PRK06217 hypothetical protein; Validated
Probab=94.37 E-value=0.058 Score=54.10 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccc--CcEEEE
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDKAVEMF--NLRSWV 239 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~~~f--~~~~wv 239 (1096)
.|.|.|++|+||||+|+++.......++ |..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeec
Confidence 4899999999999999999986544333 555563
No 355
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.33 E-value=0.041 Score=58.68 Aligned_cols=91 Identities=20% Similarity=0.284 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhc-cCCCCCC
Q 043647 187 KAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESI-TFSPNSL 265 (1096)
Q Consensus 187 ~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-~~~~~~~ 265 (1096)
...+++.++.. -+-+.++|+.|+|||++++..........| ...-++.+...+...++ .+++.- .......
T Consensus 22 ~~~ll~~l~~~------~~pvLl~G~~GtGKT~li~~~l~~l~~~~~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~~~~ 93 (272)
T PF12775_consen 22 YSYLLDLLLSN------GRPVLLVGPSGTGKTSLIQNFLSSLDSDKY-LVITINFSAQTTSNQLQ-KIIESKLEKRRGRV 93 (272)
T ss_dssp HHHHHHHHHHC------TEEEEEESSTTSSHHHHHHHHHHCSTTCCE-EEEEEES-TTHHHHHHH-HCCCTTECECTTEE
T ss_pred HHHHHHHHHHc------CCcEEEECCCCCchhHHHHhhhccCCcccc-ceeEeeccCCCCHHHHH-HHHhhcEEcCCCCC
Confidence 34566666653 245789999999999999988764322221 13334444443443333 222221 1100000
Q ss_pred CcHHHHHHHHHHHhCCCcEEEEEecCCCCC
Q 043647 266 KDLNQIQVQLREAVAGKRFLIVLDDVWSKN 295 (1096)
Q Consensus 266 ~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~ 295 (1096)
-.. -.+|+.++++||+--..
T Consensus 94 ~gP----------~~~k~lv~fiDDlN~p~ 113 (272)
T PF12775_consen 94 YGP----------PGGKKLVLFIDDLNMPQ 113 (272)
T ss_dssp EEE----------ESSSEEEEEEETTT-S-
T ss_pred CCC----------CCCcEEEEEecccCCCC
Confidence 000 14789999999996443
No 356
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.30 E-value=0.02 Score=34.25 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=18.7
Q ss_pred cceEEEecccccccCCCCcCCC
Q 043647 557 KLRVLSLKKYYITELPHSIGDL 578 (1096)
Q Consensus 557 ~Lr~L~L~~~~~~~lp~~i~~l 578 (1096)
+|++||+++|.++.+|..|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999887754
No 357
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.30 E-value=0.26 Score=49.91 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=32.8
Q ss_pred HHHHHhCCCcEEEEEecCCCC-ChhhHHHhhcccCC--CCCCcEEEEEcCchhhhhhcC
Q 043647 274 QLREAVAGKRFLIVLDDVWSK-NYSLWNTLKSPFRA--GASGSKILVTTCSTDVALTVG 329 (1096)
Q Consensus 274 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~~~ 329 (1096)
.|.+.|.-++-+||+|..-+. |...-..+...|.. ...+-.+|+.|.+..+...++
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~c 209 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMC 209 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHh
Confidence 355666777889999987442 11112222222221 234667888898888877654
No 358
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.30 E-value=1.4 Score=47.64 Aligned_cols=151 Identities=9% Similarity=0.019 Sum_probs=87.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc--------ccc-ccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHH
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDK--------AVE-MFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQ 274 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~--------~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 274 (1096)
.++..++|..|.||+++|+.+.+.. ... +-+...++.... ..-..+++...
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g--------------------~~i~vd~Ir~l 77 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD--------------------KDLSKSEFLSA 77 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC--------------------CcCCHHHHHHH
Confidence 4677799999999999998877643 111 222222221101 11122333332
Q ss_pred HHHHh-----CCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCch-hhhhh-cCCcceeeCCCCChHhHHHH
Q 043647 275 LREAV-----AGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCST-DVALT-VGTAEYYNLKLLSDDDCWSV 347 (1096)
Q Consensus 275 l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~l 347 (1096)
+...- .+.+-++|+|++...+......+...+..-...+.+|++|.+. .+... ......+++.+++.++..+.
T Consensus 78 ~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~ 157 (299)
T PRK07132 78 INKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAK 157 (299)
T ss_pred HHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHH
Confidence 22221 2577889999997766666777777776655667777655443 33322 23346799999999998877
Q ss_pred HHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHH
Q 043647 348 FVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAET 384 (1096)
Q Consensus 348 f~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 384 (1096)
+.... . ..+.+..++...+|.=-|+..
T Consensus 158 l~~~~-----~-----~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 158 LLSKN-----K-----EKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHHcC-----C-----ChhHHHHHHHHcCCHHHHHHH
Confidence 65431 0 113345566666663344444
No 359
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.27 E-value=0.41 Score=49.43 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
.+++|+|..|.|||||++.+....
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998753
No 360
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=0.039 Score=64.01 Aligned_cols=163 Identities=18% Similarity=0.231 Sum_probs=88.6
Q ss_pred CCccccchHHHHHHHHHHhcCCC-CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHH
Q 043647 177 EPAVFGRDEDKAKILEMVLRDEP-TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSIL 255 (1096)
Q Consensus 177 ~~~~vgr~~~~~~l~~~L~~~~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 255 (1096)
+.+-+|.++-.++|+++|--..- ..-+-+++.+||++|+|||+|++.++.-...+ | +-++++.-.|..++
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk-f---vR~sLGGvrDEAEI----- 392 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK-F---VRISLGGVRDEAEI----- 392 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC-E---EEEecCccccHHHh-----
Confidence 45678999999999998853321 22345799999999999999999998743322 2 11223332222221
Q ss_pred HhccCCCC---CCCcHHHHHHHHHHHhCCCcEEEEEecCCCCCh----hhHHHhhcccCCCC-------------CCcEE
Q 043647 256 ESITFSPN---SLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNY----SLWNTLKSPFRAGA-------------SGSKI 315 (1096)
Q Consensus 256 ~~l~~~~~---~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~-------------~gs~i 315 (1096)
.++.. +.. ...+...+++ .+.+.=+++||.++.... +--..+...|.+-. .=|+|
T Consensus 393 ---RGHRRTYIGam-PGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 393 ---RGHRRTYIGAM-PGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred ---ccccccccccC-ChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 11110 111 1122222222 234566888998864211 00111222222111 11344
Q ss_pred -EEEcCch-h-h-hhhcCCcceeeCCCCChHhHHHHHHHhhc
Q 043647 316 -LVTTCST-D-V-ALTVGTAEYYNLKLLSDDDCWSVFVKHAF 353 (1096)
Q Consensus 316 -ivTtR~~-~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~a~ 353 (1096)
.|+|-+. + + +..++...++++.+-+++|-.++-+++..
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 3444332 2 1 22235567899999999999888887764
No 361
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.21 E-value=0.17 Score=56.79 Aligned_cols=85 Identities=15% Similarity=0.176 Sum_probs=52.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCcc-ChHHHHHHHHHhccCCCC-----CCCc--HH-----H
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDF-DILRITKSILESITFSPN-----SLKD--LN-----Q 270 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~--~~-----~ 270 (1096)
-..++|+|..|+|||||++.+.... ..+.++.+-+++.. .+.++.++++..-..... ..++ .. .
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~---~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT---TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC---CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 3679999999999999999998642 23556666666654 345566665443221110 0111 11 1
Q ss_pred HHHHHHHHh--CCCcEEEEEecC
Q 043647 271 IQVQLREAV--AGKRFLIVLDDV 291 (1096)
Q Consensus 271 ~~~~l~~~l--~~kr~LlVlDdv 291 (1096)
....+.+++ +|+++|+++||+
T Consensus 239 ~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 239 TATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCh
Confidence 122244444 689999999999
No 362
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.18 E-value=0.12 Score=58.64 Aligned_cols=88 Identities=16% Similarity=0.122 Sum_probs=56.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCcc-ChHHHHHHHHHhccCCC------CCCCc-H-----HH
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDF-DILRITKSILESITFSP------NSLKD-L-----NQ 270 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~-~-----~~ 270 (1096)
-..++|+|.+|+|||||+..+.+.....+-+.++++-+++.. .+.++..++...-.... ..... . ..
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 356899999999999999888876543356777787776653 45666666654322111 11111 1 11
Q ss_pred HHHHHHHHh--C-CCcEEEEEecC
Q 043647 271 IQVQLREAV--A-GKRFLIVLDDV 291 (1096)
Q Consensus 271 ~~~~l~~~l--~-~kr~LlVlDdv 291 (1096)
....+.+++ + ++++|+++|++
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccc
Confidence 223345555 3 89999999999
No 363
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.17 E-value=0.32 Score=51.30 Aligned_cols=124 Identities=14% Similarity=0.091 Sum_probs=63.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccc----ccCc--EEEEEec----CccChHHHH--------------HHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVE----MFNL--RSWVCVS----DDFDILRIT--------------KSILESIT 259 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~f~~--~~wv~~~----~~~~~~~~~--------------~~i~~~l~ 259 (1096)
-.+++|+|..|+|||||++.+....... .++. +.++.-. ...++.+.+ .++++.++
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~ 104 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ 104 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC
Confidence 3589999999999999999998753211 2322 2222110 011222222 22333333
Q ss_pred CCCC------CCCcHHHHHHHHHHHhCCCcEEEEEecCCCC-ChhhHHHhhcccCCC--CCCcEEEEEcCchhhhhh
Q 043647 260 FSPN------SLKDLNQIQVQLREAVAGKRFLIVLDDVWSK-NYSLWNTLKSPFRAG--ASGSKILVTTCSTDVALT 327 (1096)
Q Consensus 260 ~~~~------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~~ 327 (1096)
.... ....-+...-.+...+..+.=++++|+--.. +...-..+...+... ..|..||++|.+...+..
T Consensus 105 l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~ 181 (246)
T cd03237 105 IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDY 181 (246)
T ss_pred CHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 2210 0111112222345556677789999987432 222233333333221 236678889888776554
No 364
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.17 E-value=0.038 Score=56.76 Aligned_cols=25 Identities=40% Similarity=0.526 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
...+|+|+|++|+||||||+.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999864
No 365
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.17 E-value=0.74 Score=47.12 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
-.+++|.|+.|.|||||++.+....
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcC
Confidence 3589999999999999999988753
No 366
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.17 E-value=0.17 Score=61.35 Aligned_cols=129 Identities=16% Similarity=0.142 Sum_probs=69.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcE
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKRF 284 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 284 (1096)
+-|.|+|++|.|||++|+.+....... | +.++.+ ++.. +. . ......+...+...-...++
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~-f---~~is~~------~~~~-~~---~-----g~~~~~~~~~f~~a~~~~P~ 246 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVP-F---FTISGS------DFVE-MF---V-----GVGASRVRDMFEQAKKAAPC 246 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCC-E---EEEehH------HhHH-hh---h-----cccHHHHHHHHHHHHhcCCc
Confidence 348999999999999999998754331 1 122211 1111 00 0 01112233333333445789
Q ss_pred EEEEecCCCCC----------hhhHHH----hhcccCCC--CCCcEEEEEcCchhhhhhc--C---CcceeeCCCCChHh
Q 043647 285 LIVLDDVWSKN----------YSLWNT----LKSPFRAG--ASGSKILVTTCSTDVALTV--G---TAEYYNLKLLSDDD 343 (1096)
Q Consensus 285 LlVlDdv~~~~----------~~~~~~----l~~~l~~~--~~gs~iivTtR~~~v~~~~--~---~~~~~~l~~L~~~~ 343 (1096)
+|++|+++... ...++. +...+... ..+.-||.||..++..... . -...+.++..+.++
T Consensus 247 IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~ 326 (644)
T PRK10733 247 IIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 326 (644)
T ss_pred EEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHH
Confidence 99999985420 011222 22222211 2344556677766543221 1 23567788888888
Q ss_pred HHHHHHHhh
Q 043647 344 CWSVFVKHA 352 (1096)
Q Consensus 344 ~~~lf~~~a 352 (1096)
-.+++..+.
T Consensus 327 R~~Il~~~~ 335 (644)
T PRK10733 327 REQILKVHM 335 (644)
T ss_pred HHHHHHHHh
Confidence 888888776
No 367
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.13 E-value=0.28 Score=49.64 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFD 226 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (1096)
-.+++|+|..|.|||||++.++.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999985
No 368
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.12 E-value=0.29 Score=55.17 Aligned_cols=26 Identities=31% Similarity=0.291 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
...+|.++|..|+||||+|..++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998877543
No 369
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.09 E-value=0.2 Score=56.75 Aligned_cols=88 Identities=20% Similarity=0.206 Sum_probs=54.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCcc-ChHHHHHHHHHhccCCC-------CCCCcHH-----H
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDF-DILRITKSILESITFSP-------NSLKDLN-----Q 270 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~-----~ 270 (1096)
-.-++|.|..|+|||||+..+.......+-+.++++-+++.. .+.++.+++...=.... .+..-.. .
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 356899999999999999887665433222457777776654 45667777665322111 0111111 1
Q ss_pred HHHHHHHHh---CCCcEEEEEecC
Q 043647 271 IQVQLREAV---AGKRFLIVLDDV 291 (1096)
Q Consensus 271 ~~~~l~~~l---~~kr~LlVlDdv 291 (1096)
....+.+++ +|+++|+++|++
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecch
Confidence 123355555 689999999999
No 370
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.07 E-value=0.27 Score=47.82 Aligned_cols=118 Identities=13% Similarity=0.034 Sum_probs=60.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcE--EEEEecCccChHHHHHHHHHhccCC----C--CCCCc-------H
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLR--SWVCVSDDFDILRITKSILESITFS----P--NSLKD-------L 268 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~--~wv~~~~~~~~~~~~~~i~~~l~~~----~--~~~~~-------~ 268 (1096)
...|-|++..|.||||.|..+.-......+... -|+.-.........+..+ .+... . ....+ .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHHH
Confidence 367888999999999999655543222122111 122222122333344332 11110 0 00111 1
Q ss_pred HHHHHHHHHHhC-CCcEEEEEecCCCC---ChhhHHHhhcccCCCCCCcEEEEEcCchh
Q 043647 269 NQIQVQLREAVA-GKRFLIVLDDVWSK---NYSLWNTLKSPFRAGASGSKILVTTCSTD 323 (1096)
Q Consensus 269 ~~~~~~l~~~l~-~kr~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 323 (1096)
.+.-...++.+. +.-=++|||.+-.. .....+.+...+.....+..||+|-|+..
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 112223344444 44459999998321 12334556666655666789999999864
No 371
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.06 E-value=0.19 Score=54.98 Aligned_cols=58 Identities=19% Similarity=0.120 Sum_probs=40.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcccccc-----ccCcEEEEEecCccChHHHHHHHHHhccC
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAVE-----MFNLRSWVCVSDDFDILRITKSILESITF 260 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 260 (1096)
..-.++.|+|.+|+||||+|..++...... .-..++|++....++..++ .++++.++.
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 346799999999999999998876532211 1135789998887777764 445555543
No 372
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.05 E-value=0.51 Score=47.27 Aligned_cols=24 Identities=33% Similarity=0.619 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
.+++|+|..|.|||||++.+....
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998753
No 373
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.04 E-value=0.23 Score=55.97 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
...+++++|+.|+||||++..+...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999999877653
No 374
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.03 E-value=0.071 Score=54.07 Aligned_cols=22 Identities=32% Similarity=0.199 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFD 226 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (1096)
++++|.|+.|.||||+.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999988875
No 375
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.03 E-value=0.3 Score=50.40 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|..|.|||||++.+...
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 58999999999999999998865
No 376
>PRK06547 hypothetical protein; Provisional
Probab=94.02 E-value=0.069 Score=52.54 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
....+|+|.|+.|+||||+|+.+....
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999998753
No 377
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.01 E-value=0.18 Score=49.13 Aligned_cols=117 Identities=21% Similarity=0.212 Sum_probs=61.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCcc--ChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCC
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDF--DILRITKSILESITFSPNSLKDLNQIQVQLREAVAGK 282 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 282 (1096)
.+++|+|..|.|||||++.+...... ....+++.-.... ...+. ...+..... ...-+...-.+...+...
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~----~~~i~~~~q-lS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKP--TSGEILIDGKDIAKLPLEEL----RRRIGYVPQ-LSGGQRQRVALARALLLN 98 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccCCHHHH----HhceEEEee-CCHHHHHHHHHHHHHhcC
Confidence 58999999999999999999875432 2334443221111 11111 111111100 111122223345555566
Q ss_pred cEEEEEecCCCC-ChhhHHHhhcccCCC-CCCcEEEEEcCchhhhhhc
Q 043647 283 RFLIVLDDVWSK-NYSLWNTLKSPFRAG-ASGSKILVTTCSTDVALTV 328 (1096)
Q Consensus 283 r~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~~ 328 (1096)
.-++++|+.-.. +......+...+... ..+..++++|.+.......
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 788999998532 223333333333221 1256788888887766543
No 378
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.00 E-value=0.0062 Score=59.01 Aligned_cols=71 Identities=24% Similarity=0.334 Sum_probs=47.9
Q ss_pred CCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCC
Q 043647 993 LHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTS 1064 (1096)
Q Consensus 993 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~ 1064 (1096)
+.++++++.|.+.+|..+.+..-+..+ ...++|+.|+|++|++|++-.-..+..+++|+.|.|.+.+.+..
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhc
Confidence 456677888888888766554433222 24578888888888888765444566778888888877555443
No 379
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.98 E-value=0.28 Score=56.22 Aligned_cols=87 Identities=14% Similarity=0.178 Sum_probs=45.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecC-ccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCC
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSD-DFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAG 281 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 281 (1096)
.+|++++|+.|+||||++..++.....+ ....+..|.... .....+-++...+..+.......+..+....+ ..+++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 4799999999999999999888654322 122345554432 12233334444454443322222222222222 23334
Q ss_pred CcEEEEEecCC
Q 043647 282 KRFLIVLDDVW 292 (1096)
Q Consensus 282 kr~LlVlDdv~ 292 (1096)
+ -.+++|-.-
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 3 366667653
No 380
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.97 E-value=0.098 Score=54.07 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999988864
No 381
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.94 E-value=0.21 Score=49.75 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|..|.|||||++.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 382
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=93.92 E-value=0.41 Score=49.81 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|..|.|||||++.+...
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 383
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.91 E-value=0.44 Score=49.45 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|.|||||++.++.-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 384
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.89 E-value=0.13 Score=52.24 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
+..+|+|+|++|+||||+|+.+....
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999988743
No 385
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.87 E-value=0.26 Score=51.76 Aligned_cols=87 Identities=20% Similarity=0.243 Sum_probs=54.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccc--c-ccCcEEEEEecCcc-ChHHHHHHHHHhccCCCC-----CCCc--HH----
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAV--E-MFNLRSWVCVSDDF-DILRITKSILESITFSPN-----SLKD--LN---- 269 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~--~-~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~--~~---- 269 (1096)
.-++|.|..|+|||+|+..+.++... + +-+.++++-+++.. +..++..++...=..... ..++ ..
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 46899999999999999888876431 1 35678888887764 456666666553211110 0111 11
Q ss_pred -HHHHHHHHHh--C-CCcEEEEEecC
Q 043647 270 -QIQVQLREAV--A-GKRFLIVLDDV 291 (1096)
Q Consensus 270 -~~~~~l~~~l--~-~kr~LlVlDdv 291 (1096)
-....+.+++ + ++++|+++||+
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 1122345555 3 78999999998
No 386
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.86 E-value=0.062 Score=50.81 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecC
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSD 243 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~ 243 (1096)
++|.|+|..|+|||||++.+.+....+.+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 479999999999999999999876555666555665544
No 387
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.86 E-value=0.23 Score=61.22 Aligned_cols=135 Identities=15% Similarity=0.100 Sum_probs=72.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
..++|+...+.++.+.+..-.. ...-|.|+|..|+|||++|+.+++..... -...+.+++..-. ...+-..+...
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~---~~~pVLI~GE~GTGK~~lA~~ih~~s~r~-~~~~v~i~c~~~~-~~~~~~~lfg~ 450 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ---SDSTVLILGETGTGKELIARAIHNLSGRN-NRRMVKMNCAAMP-AGLLESDLFGH 450 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC---CCCCEEEECCCCcCHHHHHHHHHHhcCCC-CCCeEEEecccCC-hhHhhhhhcCc
Confidence 3689999888888766643211 22468899999999999999998753221 1233444444322 11122222211
Q ss_pred ccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCCC-----------CCcEEEEEcCch
Q 043647 258 ITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGA-----------SGSKILVTTCST 322 (1096)
Q Consensus 258 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~~ 322 (1096)
..+.... .. ......+ -....=.|+||+|..-.......+...+..+. .+.|||.||...
T Consensus 451 ~~~~~~g-~~-~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 451 ERGAFTG-AS-AQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred ccccccc-cc-cchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 1111000 00 0011111 11223468999998776666666655543221 245888888643
No 388
>PRK06762 hypothetical protein; Provisional
Probab=93.85 E-value=0.046 Score=53.93 Aligned_cols=24 Identities=42% Similarity=0.523 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..+|.|.|++|+||||+|+.+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998864
No 389
>PRK00625 shikimate kinase; Provisional
Probab=93.80 E-value=0.04 Score=54.21 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
.|.++||+|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998753
No 390
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.79 E-value=0.87 Score=46.71 Aligned_cols=23 Identities=43% Similarity=0.522 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|.|..|.|||||++.+..-
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999753
No 391
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.79 E-value=0.064 Score=65.91 Aligned_cols=184 Identities=14% Similarity=0.096 Sum_probs=84.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCC---CC----CcHHHHHHHHH
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPN---SL----KDLNQIQVQLR 276 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~----~~~~~~~~~l~ 276 (1096)
.+++.|.|+.|.||||+.+.+.-.... ....++|.+..... ...+.++...++.... .. .....+...+.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~--aq~G~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~ 398 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALM--FQSGIPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILS 398 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHH--HHhCCCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHH
Confidence 478999999999999999888653110 11111222211100 0111111111111100 00 11222222222
Q ss_pred HHhCCCcEEEEEecCCCC-ChhhHHHh----hcccCCCCCCcEEEEEcCchhhhhhcCCcceeeCCCCChHh-HHHHHHH
Q 043647 277 EAVAGKRFLIVLDDVWSK-NYSLWNTL----KSPFRAGASGSKILVTTCSTDVALTVGTAEYYNLKLLSDDD-CWSVFVK 350 (1096)
Q Consensus 277 ~~l~~kr~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~~-~~~lf~~ 350 (1096)
. + ..+-|+++|..-.. +..+...+ ...+. ..|+.+|+||...++.........+.-..+..++ ... |..
T Consensus 399 ~-~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~Y 473 (771)
T TIGR01069 399 K-T-TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PTY 473 (771)
T ss_pred h-c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eEE
Confidence 1 2 57899999998653 22233333 22222 3578999999998875433221111111111110 000 000
Q ss_pred hhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHHHHhccCCCHHHHHHHHh
Q 043647 351 HAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGGLLRCKQSDDEWDEILN 403 (1096)
Q Consensus 351 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~ 403 (1096)
+. ..+ ..-...|-+|++++ |+|-.|.--|..+... ...++.+++.
T Consensus 474 kl-~~G-----~~g~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~ 518 (771)
T TIGR01069 474 KL-LKG-----IPGESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIE 518 (771)
T ss_pred EE-CCC-----CCCCcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 11 001 01124566777776 7888888777776543 3334444443
No 392
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.75 E-value=0.15 Score=56.77 Aligned_cols=22 Identities=41% Similarity=0.665 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFD 226 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (1096)
.+++|+|+.|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4899999999999999998875
No 393
>PRK03839 putative kinase; Provisional
Probab=93.75 E-value=0.043 Score=54.98 Aligned_cols=23 Identities=39% Similarity=0.684 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999854
No 394
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=93.74 E-value=0.34 Score=57.83 Aligned_cols=134 Identities=12% Similarity=0.051 Sum_probs=71.6
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHH
Q 043647 177 EPAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 177 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
...++|....+.++.+.+..-.. ...-|.|+|..|+|||++|+.+++..... -...+.|++..-. ...+...+
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~---~~~pvli~Ge~GtGK~~lA~~ih~~s~r~-~~pfv~i~c~~~~--~~~~~~~l- 267 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVAR---SNSTVLLRGESGTGKELIAKAIHYLSPRA-KRPFVKVNCAALS--ETLLESEL- 267 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhC---cCCCEEEECCCCccHHHHHHHHHHhCCCC-CCCeEEeecCCCC--HHHHHHHH-
Confidence 45789999999988887743221 12357899999999999999998753211 1123344444321 22222211
Q ss_pred hccCCCCCC-CcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCCC-----------CCcEEEEEcCc
Q 043647 257 SITFSPNSL-KDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGA-----------SGSKILVTTCS 321 (1096)
Q Consensus 257 ~l~~~~~~~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 321 (1096)
.+..... ..... ...........-.|+||+|..-.......+...+..+. ...+||.||..
T Consensus 268 --fg~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 268 --FGHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred --cCCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 1111100 00000 00000001233458899998776666666666554321 12478887754
No 395
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.74 E-value=0.079 Score=52.97 Aligned_cols=42 Identities=29% Similarity=0.226 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccCh
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDI 247 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~ 247 (1096)
.|+|+|-||+||||+|.........++-..+.-|++..++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCCh
Confidence 589999999999999987555443332123444555555443
No 396
>PTZ00035 Rad51 protein; Provisional
Probab=93.74 E-value=0.32 Score=53.69 Aligned_cols=58 Identities=19% Similarity=0.141 Sum_probs=39.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccc---c--ccCcEEEEEecCccChHHHHHHHHHhccC
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAV---E--MFNLRSWVCVSDDFDILRITKSILESITF 260 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~--~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 260 (1096)
..-.++.|+|..|+||||++..++-.... . .-..++||+....++.+++ .++++.++.
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 34678999999999999999887643321 1 1235679988777777664 444555543
No 397
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=93.70 E-value=0.18 Score=55.68 Aligned_cols=133 Identities=13% Similarity=0.079 Sum_probs=69.8
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhc
Q 043647 179 AVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESI 258 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 258 (1096)
.++|+...+.++.+.+..-.. .-.-|.|+|..|+||+++|+.++..... .-...+.|++..- +...+...+...-
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~---~~~pVlI~GE~GtGK~~lA~~iH~~s~r-~~~pfv~v~c~~~-~~~~~~~~lfg~~ 81 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP---LDKPVLIIGERGTGKELIASRLHYLSSR-WQGPFISLNCAAL-NENLLDSELFGHE 81 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC---CCCCEEEECCCCCcHHHHHHHHHHhCCc-cCCCeEEEeCCCC-CHHHHHHHHcccc
Confidence 588999888888877744321 1235789999999999999998853211 1122334444432 2222222222111
Q ss_pred cCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCCC-----------CCcEEEEEcCc
Q 043647 259 TFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGA-----------SGSKILVTTCS 321 (1096)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 321 (1096)
....... .... ...+. ....=.|+||||..-.......+...+..+. ...+||.||..
T Consensus 82 ~~~~~g~-~~~~-~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 82 AGAFTGA-QKRH-PGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred ccccCCc-cccc-CCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 1000000 0000 00111 1222347799998776666666665553321 13588888754
No 398
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.67 E-value=0.68 Score=60.49 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAV 230 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 230 (1096)
..+-|.++|++|.|||.||++++.+..+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 3567889999999999999999987544
No 399
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.66 E-value=0.27 Score=51.62 Aligned_cols=49 Identities=12% Similarity=0.263 Sum_probs=34.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHH
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKS 253 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 253 (1096)
..-.++.|.|.+|+|||++|.++..... +.-..++||+... ++.++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEEEeeC--CHHHHHHH
Confidence 3457999999999999999987654322 2345678887654 44455554
No 400
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.63 E-value=0.42 Score=50.64 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
-.+++|+|..|.|||||++.++..
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999864
No 401
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.63 E-value=0.38 Score=52.88 Aligned_cols=105 Identities=17% Similarity=0.185 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHH-HHHHHhccccccccCcEEEEEecC-ccChHHHHHHHHHhccCCC
Q 043647 185 EDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTT-LARVAFDDKAVEMFNLRSWVCVSD-DFDILRITKSILESITFSP 262 (1096)
Q Consensus 185 ~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 262 (1096)
+....+..++.+.. --.+.++|++||+.|+|||| ||+..+.......-..++.|+... .....+-++..++-++.+-
T Consensus 185 ~~l~~~~~~~~~~~-~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~ 263 (407)
T COG1419 185 EKLRKLLLSLIENL-IVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL 263 (407)
T ss_pred HHHHHHHHhhcccc-ccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce
Confidence 33444445554331 11236899999999999986 454444432122334566666533 2233444444555555443
Q ss_pred CCCCcHHHHHHHHHHHhCCCcEEEEEecCC
Q 043647 263 NSLKDLNQIQVQLREAVAGKRFLIVLDDVW 292 (1096)
Q Consensus 263 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~ 292 (1096)
....+..++...+... +.. =+|.+|=+.
T Consensus 264 ~vv~~~~el~~ai~~l-~~~-d~ILVDTaG 291 (407)
T COG1419 264 EVVYSPKELAEAIEAL-RDC-DVILVDTAG 291 (407)
T ss_pred EEecCHHHHHHHHHHh-hcC-CEEEEeCCC
Confidence 3334445544444432 233 244456553
No 402
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=93.58 E-value=0.55 Score=49.86 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|..|.|||||++.+...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 58999999999999999999875
No 403
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.58 E-value=0.29 Score=55.34 Aligned_cols=86 Identities=19% Similarity=0.164 Sum_probs=47.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCC-----CCCCCc-HH-----HHH
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFS-----PNSLKD-LN-----QIQ 272 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~-~~-----~~~ 272 (1096)
-..++|+|..|+|||||++.+...... ...++|..-....++.++....+...... ...... .. ...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~p--d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADAF--DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC--CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 357999999999999999888764321 22344443223344554444443332111 111111 11 112
Q ss_pred HHHHHHh--CCCcEEEEEecC
Q 043647 273 VQLREAV--AGKRFLIVLDDV 291 (1096)
Q Consensus 273 ~~l~~~l--~~kr~LlVlDdv 291 (1096)
..+.+++ +++.+|+++||+
T Consensus 243 ~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHcCCCEEEeccch
Confidence 2234444 589999999998
No 404
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.58 E-value=0.15 Score=57.54 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=55.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCcc-ChHHHHHHHHHhccCCC------CCCCc-HH-----H
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDF-DILRITKSILESITFSP------NSLKD-LN-----Q 270 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~-~~-----~ 270 (1096)
-.-++|.|.+|+|||+|+..+..+....+-+.++++-+++.. ...++.+++...=.... ...+. .. .
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~ 217 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGH 217 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHH
Confidence 356899999999999999888776432245778888887764 45566666654311110 01111 11 1
Q ss_pred HHHHHHHHh---CCCcEEEEEecC
Q 043647 271 IQVQLREAV---AGKRFLIVLDDV 291 (1096)
Q Consensus 271 ~~~~l~~~l---~~kr~LlVlDdv 291 (1096)
....+.+++ +|+++|+++||+
T Consensus 218 ~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 218 TALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHhcCCceEEEecCh
Confidence 223345555 479999999999
No 405
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.58 E-value=0.047 Score=53.69 Aligned_cols=26 Identities=35% Similarity=0.322 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKA 229 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 229 (1096)
..++.+.|+.|+|||.+|+++.....
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56889999999999999998887543
No 406
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.58 E-value=0.11 Score=59.50 Aligned_cols=99 Identities=14% Similarity=0.211 Sum_probs=53.5
Q ss_pred HHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEE-EEEecCcc-ChHHHHHHHHHhccCCCCCCC
Q 043647 189 KILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRS-WVCVSDDF-DILRITKSILESITFSPNSLK 266 (1096)
Q Consensus 189 ~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~-wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~ 266 (1096)
++++.++.- .+-.-..|+|++|+|||||++.+.+.....+-++.+ .+-|.+.. .+.++.+.+-.++-....+..
T Consensus 405 RvIDll~PI----GkGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p 480 (672)
T PRK12678 405 RVIDLIMPI----GKGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRP 480 (672)
T ss_pred eeeeeeccc----ccCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCC
Confidence 445555332 233568999999999999999988854332334433 34444443 233333333111111111111
Q ss_pred -c----HHHHHHHHHHHh--CCCcEEEEEecC
Q 043647 267 -D----LNQIQVQLREAV--AGKRFLIVLDDV 291 (1096)
Q Consensus 267 -~----~~~~~~~l~~~l--~~kr~LlVlDdv 291 (1096)
. ...+...+.+++ .++.+||++|++
T Consensus 481 ~~~~~~~a~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 481 PSDHTTVAELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 1 112223344454 689999999998
No 407
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=0.48 Score=55.28 Aligned_cols=157 Identities=18% Similarity=0.199 Sum_probs=82.9
Q ss_pred CCccccchHHHH---HHHHHHhcCCC----CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHH
Q 043647 177 EPAVFGRDEDKA---KILEMVLRDEP----TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILR 249 (1096)
Q Consensus 177 ~~~~vgr~~~~~---~l~~~L~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~ 249 (1096)
-.++-|.++.++ ++++.|.++.. +..-++-+.++|++|.|||.||+++..+..+-+|. .|..
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~------iSGS----- 217 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFS------ISGS----- 217 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCcee------ccch-----
Confidence 345678876554 56666654431 22446778999999999999999999987664332 1110
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCC----------hhhHHH----hhcccCCCC--CCc
Q 043647 250 ITKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKN----------YSLWNT----LKSPFRAGA--SGS 313 (1096)
Q Consensus 250 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~----l~~~l~~~~--~gs 313 (1096)
+..+..-+ .....+.+...+..+.-+++|++|.++... -+++++ +..-...++ .|-
T Consensus 218 ---~FVemfVG-----vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gv 289 (596)
T COG0465 218 ---DFVEMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGV 289 (596)
T ss_pred ---hhhhhhcC-----CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCce
Confidence 00111100 011222333444556668999999875321 123333 332222222 233
Q ss_pred EEEEEcCchhhhhhc--CC---cceeeCCCCChHhHHHHHHHhh
Q 043647 314 KILVTTCSTDVALTV--GT---AEYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 314 ~iivTtR~~~v~~~~--~~---~~~~~l~~L~~~~~~~lf~~~a 352 (1096)
.||-.|-.++|.... .. ++.+.++.-+...-.+.++-++
T Consensus 290 iviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~ 333 (596)
T COG0465 290 IVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHA 333 (596)
T ss_pred EEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHh
Confidence 344444444444221 11 2445666666666666777665
No 408
>PLN02924 thymidylate kinase
Probab=93.56 E-value=0.24 Score=50.96 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=34.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHH
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
..-..|+|-|..|+||||+|+.+.+......+....+-..+......+..++++.
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHh
Confidence 3457899999999999999999998765544444332211112234444555544
No 409
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.54 E-value=0.16 Score=51.17 Aligned_cols=44 Identities=18% Similarity=0.145 Sum_probs=29.4
Q ss_pred EEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHH
Q 043647 207 IPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKS 253 (1096)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 253 (1096)
+.|.|++|+|||++|..+...... .=..++|++... +..++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-RGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCC--CHHHHHHH
Confidence 679999999999999887664332 224577876644 34444443
No 410
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.53 E-value=0.057 Score=54.59 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
+.++|.|+|++|+||||+|+.+...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999998864
No 411
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.49 E-value=0.15 Score=54.06 Aligned_cols=25 Identities=32% Similarity=0.298 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcccc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKA 229 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~ 229 (1096)
+.|.|.|.+|+||||+|+.+.....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 4789999999999999999887543
No 412
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.47 E-value=0.81 Score=47.84 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|.|||||.+.+...
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999864
No 413
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.47 E-value=0.3 Score=55.16 Aligned_cols=85 Identities=16% Similarity=0.219 Sum_probs=51.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCcc-ChHHHHHHHHHhccCCCC-----CCCc--HH-----H
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDF-DILRITKSILESITFSPN-----SLKD--LN-----Q 270 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~--~~-----~ 270 (1096)
-..++|+|..|+|||||++.+++... .+.++.+-+++.. .+.++..+.+..-+.... ..++ .. .
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~---~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~ 234 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD---ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAY 234 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC---CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHH
Confidence 46789999999999999999887532 3455556666554 344555545443221110 0111 11 1
Q ss_pred HHHHHHHHh--CCCcEEEEEecC
Q 043647 271 IQVQLREAV--AGKRFLIVLDDV 291 (1096)
Q Consensus 271 ~~~~l~~~l--~~kr~LlVlDdv 291 (1096)
....+.+++ +|+.+|+++||+
T Consensus 235 ~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 235 LTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCc
Confidence 122244444 689999999999
No 414
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.47 E-value=0.11 Score=47.14 Aligned_cols=49 Identities=16% Similarity=0.361 Sum_probs=34.2
Q ss_pred ccccchHHHHHHHHHHhcC--CCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 179 AVFGRDEDKAKILEMVLRD--EPTDANFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.++|..-..+.+++.+..- ....+++-|++.+|+.|+|||.+|+.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4667665555555544321 123467889999999999999988887765
No 415
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.44 E-value=0.38 Score=48.25 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
..+|.|.|.+|+||||+|+.+....
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999988753
No 416
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.44 E-value=0.23 Score=50.36 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 043647 207 IPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~ 227 (1096)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999875
No 417
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.41 E-value=0.53 Score=45.36 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999998875
No 418
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.40 E-value=0.55 Score=48.38 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
+++|+|+.|.|||||++.++.-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999864
No 419
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.38 E-value=0.26 Score=55.62 Aligned_cols=88 Identities=20% Similarity=0.221 Sum_probs=54.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCcc-ChHHHHHHHHHhccCCC------CCCCc-HHH-----
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDF-DILRITKSILESITFSP------NSLKD-LNQ----- 270 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~-~~~----- 270 (1096)
-..++|.|..|+|||||+..+.......+-+.++++-+++.. .+.++++++...=.... ..... ...
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~ 222 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVAL 222 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 356899999999999999888765432233467777776653 45667776654321111 11111 111
Q ss_pred HHHHHHHHh---CCCcEEEEEecC
Q 043647 271 IQVQLREAV---AGKRFLIVLDDV 291 (1096)
Q Consensus 271 ~~~~l~~~l---~~kr~LlVlDdv 291 (1096)
....+.+++ +|+++|+++||+
T Consensus 223 ~a~tiAEyfrd~~G~~VLll~Dsl 246 (461)
T TIGR01039 223 TGLTMAEYFRDEQGQDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHhcCCeeEEEecch
Confidence 223355555 578999999999
No 420
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.36 E-value=0.54 Score=51.36 Aligned_cols=27 Identities=33% Similarity=0.335 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcccc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKA 229 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 229 (1096)
...+++++|++|+||||++..++....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999988887543
No 421
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.35 E-value=0.011 Score=59.90 Aligned_cols=81 Identities=28% Similarity=0.264 Sum_probs=65.7
Q ss_pred hcCCCCcceEEEecccccccCCCCcCCCCccceeeccccccccccc--ccccCCCCcEEeccCcccCcccCc-----ccc
Q 043647 551 LLPKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPE--SICSLCNLQFLILRGCYRLKKLPS-----NLR 623 (1096)
Q Consensus 551 ~~~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~-----~i~ 623 (1096)
+..+|+.|+||.|+-|.|+++ ..+..+.+|+.|.|+.|.|..+-+ .+.+|++|++|-|..|.-...-+. -+.
T Consensus 36 ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 467899999999999999988 457899999999999999988743 678999999999988654444432 256
Q ss_pred CCCCCceEE
Q 043647 624 NLINLRHLV 632 (1096)
Q Consensus 624 ~l~~L~~L~ 632 (1096)
-|+||+.||
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 788888886
No 422
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.33 E-value=0.67 Score=48.76 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 27 GKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999864
No 423
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.32 E-value=0.071 Score=50.86 Aligned_cols=26 Identities=38% Similarity=0.355 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKA 229 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 229 (1096)
..||-|.|.+|+||||||+++.+...
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~ 27 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLF 27 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999998654
No 424
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.32 E-value=0.53 Score=50.70 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|..|.|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999999864
No 425
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.31 E-value=0.25 Score=54.90 Aligned_cols=102 Identities=21% Similarity=0.233 Sum_probs=54.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcccccc-----ccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHH
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVE-----MFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLRE 277 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 277 (1096)
..+=+.|||..|.|||.|.-..|+....+ ||. ....++-+.+.........+. .+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~~~l~----~va~ 122 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQDDPLP----QVAD 122 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCCccHH----HHHH
Confidence 46779999999999999999999865431 332 222222222221111122222 3444
Q ss_pred HhCCCcEEEEEecCCCCChhhHHHhhcccCC-CCCCcEEEEEcCchh
Q 043647 278 AVAGKRFLIVLDDVWSKNYSLWNTLKSPFRA-GASGSKILVTTCSTD 323 (1096)
Q Consensus 278 ~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtR~~~ 323 (1096)
.+.++..||.||...-.+..+---+...|.. ...|. |||+|-|..
T Consensus 123 ~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~~ 168 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNRP 168 (362)
T ss_pred HHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCCC
Confidence 5556777999999865543332222222221 23454 555555543
No 426
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=93.31 E-value=0.61 Score=50.20 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|..|.|||||++.+...
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 34 SIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998864
No 427
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=3 Score=48.79 Aligned_cols=155 Identities=17% Similarity=0.181 Sum_probs=83.8
Q ss_pred ccccchHHHHHHHHHHhcCCC--------CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHH
Q 043647 179 AVFGRDEDKAKILEMVLRDEP--------TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~~--------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 250 (1096)
++-|..+.++.+.+.+.-+.. +-+...-|.++|++|.|||-||.++...... -+|+|..+ ++
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~------~fisvKGP----El 737 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNL------RFISVKGP----EL 737 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCe------eEEEecCH----HH
Confidence 344666666555555533211 1133456889999999999999999875332 25666554 23
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCC-----------hhhHHHhhcccCC--CCCCcEEEE
Q 043647 251 TKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKN-----------YSLWNTLKSPFRA--GASGSKILV 317 (1096)
Q Consensus 251 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~--~~~gs~iiv 317 (1096)
+...+ + .+.+.+.....+.-.-|+|.+.+|..++.. .....++...+.. +-.|--|+-
T Consensus 738 L~KyI---G------aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~a 808 (952)
T KOG0735|consen 738 LSKYI---G------ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILA 808 (952)
T ss_pred HHHHh---c------ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEE
Confidence 32221 2 122333444444456799999999987531 1224444444432 224555555
Q ss_pred EcCchhhhh-hc-CCc---ceeeCCCCChHhHHHHHHHhh
Q 043647 318 TTCSTDVAL-TV-GTA---EYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 318 TtR~~~v~~-~~-~~~---~~~~l~~L~~~~~~~lf~~~a 352 (1096)
.|..++... .+ .+. +.+.-+.-++.+-.++|...+
T Consensus 809 aTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls 848 (952)
T KOG0735|consen 809 ATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLS 848 (952)
T ss_pred ecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHh
Confidence 444333321 11 121 233444556677777776655
No 428
>PRK04040 adenylate kinase; Provisional
Probab=93.28 E-value=0.063 Score=53.80 Aligned_cols=25 Identities=32% Similarity=0.612 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
..+|+|+|++|+||||+++.+....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999988754
No 429
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=93.25 E-value=0.29 Score=54.00 Aligned_cols=45 Identities=27% Similarity=0.285 Sum_probs=32.5
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 180 VFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 180 ~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
++|+...+.++.+.+..-.. .-.-|.|+|..|+||+++|+.++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~---~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP---LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHh
Confidence 46777777777766643321 1245789999999999999998864
No 430
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.24 E-value=0.72 Score=50.43 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|.|||||.+.+...
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998864
No 431
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.24 E-value=0.13 Score=47.26 Aligned_cols=72 Identities=18% Similarity=0.152 Sum_probs=41.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKR 283 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 283 (1096)
.+-|.|.|-+|+||||+|.+++... ..-|+++++-..-..++...=++.. ...-|.+.+.+.+.-.+.+..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~------~~~~i~isd~vkEn~l~~gyDE~y~---c~i~DEdkv~D~Le~~m~~Gg 77 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT------GLEYIEISDLVKENNLYEGYDEEYK---CHILDEDKVLDELEPLMIEGG 77 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh------CCceEehhhHHhhhcchhccccccc---CccccHHHHHHHHHHHHhcCC
Confidence 4568999999999999999998532 1236666654332222222111111 123355666666766665544
Q ss_pred E
Q 043647 284 F 284 (1096)
Q Consensus 284 ~ 284 (1096)
+
T Consensus 78 ~ 78 (176)
T KOG3347|consen 78 N 78 (176)
T ss_pred c
Confidence 4
No 432
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.22 E-value=0.05 Score=48.87 Aligned_cols=22 Identities=45% Similarity=0.557 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhccc
Q 043647 207 IPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
|-|+|.+|+|||++|+.+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999877653
No 433
>PHA00729 NTP-binding motif containing protein
Probab=93.21 E-value=0.11 Score=52.75 Aligned_cols=24 Identities=42% Similarity=0.439 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
...|.|.|.+|+||||||..+.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998875
No 434
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.20 E-value=0.45 Score=54.02 Aligned_cols=89 Identities=20% Similarity=0.189 Sum_probs=51.6
Q ss_pred ceEEEEEcCCCCcHHHHH-HHHhccccc------cccCcEEEEEecCccChHHHHHHHHHhccCCCC------CCCcH--
Q 043647 204 FSLIPIVGMAGVGKTTLA-RVAFDDKAV------EMFNLRSWVCVSDDFDILRITKSILESITFSPN------SLKDL-- 268 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~-- 268 (1096)
-.-++|.|..|+|||+|| ..+.+.... +.-+.++++-+++..+.-.-+.+.+++-+.-.. ..++.
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 356899999999999997 555554321 134567888888775433334444444331110 11111
Q ss_pred HH-----HHHHHHHHh--CCCcEEEEEecCC
Q 043647 269 NQ-----IQVQLREAV--AGKRFLIVLDDVW 292 (1096)
Q Consensus 269 ~~-----~~~~l~~~l--~~kr~LlVlDdv~ 292 (1096)
.+ ....+.+++ +++.+|+|+||+-
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 10 122234444 5899999999994
No 435
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.17 E-value=0.54 Score=54.01 Aligned_cols=129 Identities=19% Similarity=0.298 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHH-HHHHHhccccccccCcEEEEEecCcc--ChHHHHHHHHHhccCC
Q 043647 185 EDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTT-LARVAFDDKAVEMFNLRSWVCVSDDF--DILRITKSILESITFS 261 (1096)
Q Consensus 185 ~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~ 261 (1096)
.-.+++++.+. .-.||.|+|-.|.|||| ||+.+|.+-.. ..--|-+.++- ....+.+.+.++++..
T Consensus 359 ~~R~~ll~~ir-------~n~vvvivgETGSGKTTQl~QyL~edGY~----~~GmIGcTQPRRvAAiSVAkrVa~EM~~~ 427 (1042)
T KOG0924|consen 359 ACRDQLLSVIR-------ENQVVVIVGETGSGKTTQLAQYLYEDGYA----DNGMIGCTQPRRVAAISVAKRVAEEMGVT 427 (1042)
T ss_pred HHHHHHHHHHh-------hCcEEEEEecCCCCchhhhHHHHHhcccc----cCCeeeecCchHHHHHHHHHHHHHHhCCc
Confidence 34455666552 23699999999999987 66777776332 22234444543 3445566666666433
Q ss_pred CC----------CCC----------cHHHHHHHHHHHhCCCcEEEEEecCCCCCh--hhHHHhhcccCCCCCCcEEEEEc
Q 043647 262 PN----------SLK----------DLNQIQVQLREAVAGKRFLIVLDDVWSKNY--SLWNTLKSPFRAGASGSKILVTT 319 (1096)
Q Consensus 262 ~~----------~~~----------~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~~~l~~~l~~~~~gs~iivTt 319 (1096)
-. +.. |---+.+.+....-.|--.||+|.+.+... +..--+.......-..-|+||||
T Consensus 428 lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtS 507 (1042)
T KOG0924|consen 428 LGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTS 507 (1042)
T ss_pred cccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEee
Confidence 11 000 111122333333334566899999976532 11111221111223467999998
Q ss_pred Cchhh
Q 043647 320 CSTDV 324 (1096)
Q Consensus 320 R~~~v 324 (1096)
-..+.
T Consensus 508 ATm~a 512 (1042)
T KOG0924|consen 508 ATMDA 512 (1042)
T ss_pred ccccH
Confidence 76543
No 436
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.17 E-value=0.46 Score=55.72 Aligned_cols=97 Identities=21% Similarity=0.244 Sum_probs=0.0
Q ss_pred CccccchHHHHHHHHHHhcC-------CCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRD-------EPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~-------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 250 (1096)
+++=|-++-+.+|.+-+--+ ..+-.+..=|.++|++|.|||-+|++|+.+.... |++|..+ ++
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~------FlSVKGP----EL 741 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN------FLSVKGP----EL 741 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee------EEeecCH----HH
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCC
Q 043647 251 TKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWS 293 (1096)
Q Consensus 251 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 293 (1096)
+.-.. ..+.+.+.+...+.=..++|.|.+|.+++
T Consensus 742 LNMYV---------GqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 742 LNMYV---------GQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHh---------cchHHHHHHHHHHhhccCCeEEEeccccc
No 437
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.14 E-value=0.33 Score=45.26 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=12.2
Q ss_pred CCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeec
Q 043647 1022 FPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIR 1057 (1096)
Q Consensus 1022 ~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~ 1057 (1096)
..++|+.+.+.. ++..++...|.+. +|+.+.+.
T Consensus 79 ~~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 79 NCTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp T-TTECEEEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccccCc--cccEEchhhhcCC-CceEEEEC
Confidence 344455554433 2444444444444 55555443
No 438
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=93.14 E-value=0.84 Score=48.05 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
-.+++|+|..|.|||||++.+...
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CCEEEEEeCCCCCHHHHHHHHhcc
Confidence 358999999999999999999865
No 439
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.14 E-value=0.14 Score=61.16 Aligned_cols=75 Identities=13% Similarity=0.065 Sum_probs=55.4
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
..++|.++.++.+...+... +.+.++|.+|+||||+|+.+.+......++..+|..- ...+...+++.++.+
T Consensus 31 ~~vigq~~a~~~L~~~~~~~-------~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n-p~~~~~~~~~~v~~~ 102 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR-------RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN-PEDPNNPKIRTVPAG 102 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC-------CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC-CCcchHHHHHHHHHh
Confidence 46889988888888777432 3688999999999999999887543226677888665 334667777777766
Q ss_pred ccC
Q 043647 258 ITF 260 (1096)
Q Consensus 258 l~~ 260 (1096)
.+.
T Consensus 103 ~G~ 105 (637)
T PRK13765 103 KGK 105 (637)
T ss_pred cCH
Confidence 553
No 440
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=93.13 E-value=0.19 Score=51.98 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=46.9
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHhc-ccCCHHHHHHHHHHHHhHHhHHHHHHHHH
Q 043647 31 EGVISKLEKWKKTLLMIQAVFSDAEEK-QLTDKAVKMWLDDLQDLAYDVEDILDEFA 86 (1096)
Q Consensus 31 ~~~~~~~~~L~~~l~~i~~~l~~a~~~-~~~~~~~~~wl~~lr~~~yd~ed~ld~~~ 86 (1096)
.-++.+++-++.+++.+|.||+...+. +......+.++.++-..||++|+++|.+.
T Consensus 317 aflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 317 AFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 346899999999999999999997444 44444589999999999999999999874
No 441
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.11 E-value=0.067 Score=53.29 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
...|.|+|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998754
No 442
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.10 E-value=0.29 Score=48.30 Aligned_cols=118 Identities=14% Similarity=-0.006 Sum_probs=60.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEe---cCccChHHHHHHHHHhc-----cCC-CCCCCc----HH-
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCV---SDDFDILRITKSILESI-----TFS-PNSLKD----LN- 269 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~---~~~~~~~~~~~~i~~~l-----~~~-~~~~~~----~~- 269 (1096)
...|-|+|..|-||||.|..+.-......+. +..|.. .........++.+- .+ +.. .....+ ..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~-V~ivQFlKg~~~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKK-VGVVQFIKGAWSTGERNLLEFGG-GVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCe-EEEEEEecCCCccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHHHHH
Confidence 4689999999999999996555432211111 111211 11223333333320 11 000 001111 11
Q ss_pred --HHHHHHHHHhC-CCcEEEEEecCCCC---ChhhHHHhhcccCCCCCCcEEEEEcCchh
Q 043647 270 --QIQVQLREAVA-GKRFLIVLDDVWSK---NYSLWNTLKSPFRAGASGSKILVTTCSTD 323 (1096)
Q Consensus 270 --~~~~~l~~~l~-~kr~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 323 (1096)
+.-...++.+. ++-=++|||.+-.. .....+++...+.....+..||+|=|+..
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11222344443 45559999998321 12335566666666666789999999764
No 443
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.08 E-value=1 Score=47.98 Aligned_cols=130 Identities=8% Similarity=0.052 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-------------ccCcEEEEEecCccChHHHHH
Q 043647 186 DKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-------------MFNLRSWVCVSDDFDILRITK 252 (1096)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------~f~~~~wv~~~~~~~~~~~~~ 252 (1096)
.-+++...+..+ .-.....++|+.|+||+++|..+....-.. |.|.........
T Consensus 5 ~~~~L~~~i~~~----rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~--------- 71 (290)
T PRK05917 5 AWEALIQRVRDQ----KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK--------- 71 (290)
T ss_pred HHHHHHHHHHcC----CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC---------
Confidence 345556655332 235677899999999999997776532110 222111100000
Q ss_pred HHHHhccCCCCCCCcHHHHHHHHHHHh-----CCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchh-hhh
Q 043647 253 SILESITFSPNSLKDLNQIQVQLREAV-----AGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTD-VAL 326 (1096)
Q Consensus 253 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~ 326 (1096)
...-..++.. .+.+.+ .+++-++|+|+++.-+.+.+..+...+-.-..++.+|++|.+.+ +..
T Consensus 72 ----------~~~I~idqiR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~ 140 (290)
T PRK05917 72 ----------GRLHSIETPR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPP 140 (290)
T ss_pred ----------CCcCcHHHHH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcH
Confidence 0001233332 222222 36667889999988877888888887766555666666666543 332
Q ss_pred hc-CCcceeeCCCC
Q 043647 327 TV-GTAEYYNLKLL 339 (1096)
Q Consensus 327 ~~-~~~~~~~l~~L 339 (1096)
.+ .....+.+.++
T Consensus 141 TI~SRcq~~~~~~~ 154 (290)
T PRK05917 141 TIRSRSLSIHIPME 154 (290)
T ss_pred HHHhcceEEEccch
Confidence 21 22245555544
No 444
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.06 E-value=0.15 Score=54.01 Aligned_cols=55 Identities=27% Similarity=0.356 Sum_probs=39.9
Q ss_pred CCCccccchHHHHH---HHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-cc
Q 043647 176 TEPAVFGRDEDKAK---ILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MF 233 (1096)
Q Consensus 176 ~~~~~vgr~~~~~~---l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f 233 (1096)
..+.+||..+..+. |++++.+.. -.-+.|.|+|++|.|||+||-.+.+..-.. .|
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk---~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGK---MAGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCc---ccccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 35679998776654 455554332 234789999999999999999999876544 55
No 445
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.04 E-value=0.36 Score=54.46 Aligned_cols=85 Identities=20% Similarity=0.273 Sum_probs=52.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCcc-ChHHHHHHHHHhccCCC------CCCCc-HHH-----
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDF-DILRITKSILESITFSP------NSLKD-LNQ----- 270 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~-~~~----- 270 (1096)
-..++|.|..|+|||||.+.+++.. ..+.++++-+++.. .+.++....+..-+... ..... ...
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~---~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSA---EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGF 238 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCC---CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHH
Confidence 4679999999999999999999754 23567777776654 34555544333211111 01111 111
Q ss_pred HHHHHHHHh--CCCcEEEEEecC
Q 043647 271 IQVQLREAV--AGKRFLIVLDDV 291 (1096)
Q Consensus 271 ~~~~l~~~l--~~kr~LlVlDdv 291 (1096)
....+.+++ +|+++|+++||+
T Consensus 239 ~a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 239 VATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 112244444 689999999999
No 446
>PTZ00494 tuzin-like protein; Provisional
Probab=93.03 E-value=8.9 Score=42.74 Aligned_cols=168 Identities=11% Similarity=0.166 Sum_probs=100.6
Q ss_pred CCCCccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHH
Q 043647 175 PTEPAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSI 254 (1096)
Q Consensus 175 ~~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 254 (1096)
..+..+|.|+.+-..+...|.+.+. ..++++.+.|.-|.||++|.+........ ..++|.+.... +-++.+
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~--aHPRIvV~TG~~GcGKSslcRsAvrkE~~----paV~VDVRg~E---DtLrsV 438 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAP--SHPRIVALAGGSGGGRCVPCRRAVRVEGV----ALVHVDVGGTE---DTLRSV 438 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccC--CCCcEEEEecCCCCCchHHHHHHHHHcCC----CeEEEEecCCc---chHHHH
Confidence 3456788898888888777765443 45899999999999999999888765433 45677776553 457788
Q ss_pred HHhccCCCCCC--CcHHHHHHHH---HHHhCCCcEEEEEecCCCCCh-hhHHHhhcccCCCCCCcEEEEEcCchhhhhhc
Q 043647 255 LESITFSPNSL--KDLNQIQVQL---REAVAGKRFLIVLDDVWSKNY-SLWNTLKSPFRAGASGSKILVTTCSTDVALTV 328 (1096)
Q Consensus 255 ~~~l~~~~~~~--~~~~~~~~~l---~~~l~~kr~LlVlDdv~~~~~-~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~ 328 (1096)
.+.++...-+. +-++-+.+.. +....++.=+||+-=-...+. ..+.+.. .|.....-|+|++---.+.+....
T Consensus 439 VKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~~n 517 (664)
T PTZ00494 439 VRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTPLN 517 (664)
T ss_pred HHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhchhh
Confidence 88888764322 2233333322 223456666666543211111 1122211 222333467887765443332111
Q ss_pred ---CCcceeeCCCCChHhHHHHHHHhh
Q 043647 329 ---GTAEYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 329 ---~~~~~~~l~~L~~~~~~~lf~~~a 352 (1096)
..-..|.++.++.++|.+...+..
T Consensus 518 ~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 518 VSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ccCccceeEecCCcCHHHHHHHHhccc
Confidence 112468899999999988765543
No 447
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.02 E-value=0.46 Score=53.65 Aligned_cols=85 Identities=19% Similarity=0.251 Sum_probs=50.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCc-cChHHHHHHHHHhccCC-------CCCCCcHHH-----
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDD-FDILRITKSILESITFS-------PNSLKDLNQ----- 270 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 270 (1096)
-..++|+|..|+|||||++.+.+.. ..+..+++.++.. ..+.+++.+....=... ..+..-...
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~---~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~ 231 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP---DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF 231 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC---CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHH
Confidence 4578999999999999999888643 3444555555553 34445555543211000 001111111
Q ss_pred HHHHHHHHh--CCCcEEEEEecC
Q 043647 271 IQVQLREAV--AGKRFLIVLDDV 291 (1096)
Q Consensus 271 ~~~~l~~~l--~~kr~LlVlDdv 291 (1096)
....+.+++ +|+++|+++||+
T Consensus 232 ~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 232 VATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCH
Confidence 122244444 689999999999
No 448
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.98 E-value=0.15 Score=52.40 Aligned_cols=62 Identities=19% Similarity=0.152 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHH
Q 043647 186 DKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~ 250 (1096)
+..++++.+.... .+..+|+|.|++|+||+||.-++....+.+ +--.++=|.-+.+++--.+
T Consensus 14 ~~~~ll~~l~~~~---g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPHT---GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGGT---T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhhc---CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcc
Confidence 5566777775432 356899999999999999998887765544 2223455555666654333
No 449
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.95 E-value=0.68 Score=56.56 Aligned_cols=121 Identities=21% Similarity=0.209 Sum_probs=71.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCC---CceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDA---NFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSI 254 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 254 (1096)
..++|.++.+..|.+.+.....+.. ......+.|+.|+|||-||++++..... ..+..+-|+.+ +... +
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fg-se~~~IriDms------e~~e-v 633 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFG-SEENFIRLDMS------EFQE-V 633 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcC-CccceEEechh------hhhh-h
Confidence 3478889999999988876543221 4667889999999999999888864311 12223333322 2222 3
Q ss_pred HHhccCCCCCCCcHHHHHHHHHHHhCCCcE-EEEEecCCCCChhhHHHhhcccCC
Q 043647 255 LESITFSPNSLKDLNQIQVQLREAVAGKRF-LIVLDDVWSKNYSLWNTLKSPFRA 308 (1096)
Q Consensus 255 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~ 308 (1096)
.+.++..+. -.. .+....+.+.++.++| +|.||||+..+......+...+..
T Consensus 634 skligsp~g-yvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~ 686 (898)
T KOG1051|consen 634 SKLIGSPPG-YVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDR 686 (898)
T ss_pred hhccCCCcc-ccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhc
Confidence 333333221 111 1122356666767765 667999988776666655544443
No 450
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.95 E-value=0.16 Score=53.85 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
.|.++|++|+||||+|+.+....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988753
No 451
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.95 E-value=0.14 Score=52.30 Aligned_cols=22 Identities=32% Similarity=0.179 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFD 226 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (1096)
.+++|.|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999884
No 452
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.88 E-value=0.061 Score=29.79 Aligned_cols=15 Identities=33% Similarity=0.569 Sum_probs=5.2
Q ss_pred ccceeeccccccccc
Q 043647 580 HLRYINLSETMIRCL 594 (1096)
Q Consensus 580 ~Lr~L~L~~~~i~~l 594 (1096)
+|+.|++++|.++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 453
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.85 E-value=0.49 Score=50.14 Aligned_cols=90 Identities=16% Similarity=0.157 Sum_probs=47.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCcc-ChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhC-C
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDF-DILRITKSILESITFSPNSLKDLNQIQVQLREAVA-G 281 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~ 281 (1096)
..+++++|.+|+||||+++.+......+ =..+.+++..... ....-++...+.++.......+.+.+...+...-+ +
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~-~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 4689999999999999998776543211 1234555543221 12222233333333222222344455444443322 3
Q ss_pred CcEEEEEecCCCC
Q 043647 282 KRFLIVLDDVWSK 294 (1096)
Q Consensus 282 kr~LlVlDdv~~~ 294 (1096)
+.=++++|..-..
T Consensus 154 ~~D~ViIDt~Gr~ 166 (270)
T PRK06731 154 RVDYILIDTAGKN 166 (270)
T ss_pred CCCEEEEECCCCC
Confidence 4568888987544
No 454
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=92.84 E-value=0.15 Score=52.48 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 043647 207 IPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~ 227 (1096)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKsT~a~~La~~ 22 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEK 22 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998864
No 455
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.84 E-value=0.45 Score=51.54 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=36.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCcc-ChHHHHHHHH
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDF-DILRITKSIL 255 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~ 255 (1096)
-..++|.|..|+|||+|++++.+.. .-+.++++-+++.. .+.+++.++-
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~---~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYS---NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCC---CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 3578999999999999999998853 34577888887653 4556666654
No 456
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.83 E-value=0.98 Score=46.90 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|..|.|||||++.+...
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998864
No 457
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.81 E-value=0.0059 Score=60.12 Aligned_cols=85 Identities=15% Similarity=0.184 Sum_probs=73.9
Q ss_pred cCCCCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceE
Q 043647 552 LPKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHL 631 (1096)
Q Consensus 552 ~~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L 631 (1096)
+..++...+||++.|.+-.+-..|+.+..|..|+++.|.|..+|+.++.+..+..+++.. +.....|.+.++++.++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchh
Confidence 345778889999999888888888888899999999999999999999999999999887 4788899999999999999
Q ss_pred Eecccc
Q 043647 632 VVTYVD 637 (1096)
Q Consensus 632 ~l~~~~ 637 (1096)
++-++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 888775
No 458
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.80 E-value=0.61 Score=47.21 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
-.+++|.|+.|.|||||.+.+..-.
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998753
No 459
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.80 E-value=0.067 Score=53.20 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 460
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=92.80 E-value=0.77 Score=47.75 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|..|.|||||++.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998864
No 461
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=92.79 E-value=0.29 Score=55.14 Aligned_cols=87 Identities=17% Similarity=0.256 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcccccc---ccC---------cEEEEEecCccChHHHHHHHHHhcc-CCC-------CC
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVE---MFN---------LRSWVCVSDDFDILRITKSILESIT-FSP-------NS 264 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~---~f~---------~~~wv~~~~~~~~~~~~~~i~~~l~-~~~-------~~ 264 (1096)
.-++|.|.+|+|||||+..+.+..... ..| .++++-+++.....+.+.+.+..-+ ... .+
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 568999999999999999988754310 023 5677777777666666666665544 211 01
Q ss_pred CCcHHH-----HHHHHHHHhC---CCcEEEEEecC
Q 043647 265 LKDLNQ-----IQVQLREAVA---GKRFLIVLDDV 291 (1096)
Q Consensus 265 ~~~~~~-----~~~~l~~~l~---~kr~LlVlDdv 291 (1096)
...... ....+.++++ |+++|+++||+
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~Dsl 256 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTDM 256 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccCh
Confidence 111111 1223555554 69999999999
No 462
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=92.78 E-value=0.12 Score=60.07 Aligned_cols=59 Identities=15% Similarity=0.263 Sum_probs=44.1
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEE
Q 043647 179 AVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVC 240 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~ 240 (1096)
+++.-.+-++++..||...-.+....+++.+.|++|+||||.++.++++. .|+.+-|.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el---g~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL---GFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh---CCeeEEecC
Confidence 45555677888888986543333446799999999999999999999764 466666764
No 463
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=92.77 E-value=0.056 Score=49.08 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=16.6
Q ss_pred EEEEcCCCCcHHHHHHHHhccc
Q 043647 207 IPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
|.|+|.+|+||||+|+.++...
T Consensus 2 vLleg~PG~GKT~la~~lA~~~ 23 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL 23 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT
T ss_pred EeeECCCccHHHHHHHHHHHHc
Confidence 6799999999999999999753
No 464
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.76 E-value=0.11 Score=52.14 Aligned_cols=118 Identities=14% Similarity=0.027 Sum_probs=56.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCC---CCCcHHHHHHHHHHHhC--
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPN---SLKDLNQIQVQLREAVA-- 280 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~l~-- 280 (1096)
++.|.|+.|.||||+.+.+.-.....+-.+.+| +.. . .-....+++..++..+. .......-...+...+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~--a~~-~-~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~ 76 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVP--AES-A-ELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNA 76 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCee--ehh-e-EecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhC
Confidence 468999999999999998884321111111111 110 0 00011111111221111 11111111222333343
Q ss_pred CCcEEEEEecCCCC-ChhhHH----HhhcccCCCCCCcEEEEEcCchhhhhhc
Q 043647 281 GKRFLIVLDDVWSK-NYSLWN----TLKSPFRAGASGSKILVTTCSTDVALTV 328 (1096)
Q Consensus 281 ~kr~LlVlDdv~~~-~~~~~~----~l~~~l~~~~~gs~iivTtR~~~v~~~~ 328 (1096)
.++-++++|..-.. +...-. .+...+.. ..+..+|++|...++....
T Consensus 77 ~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 77 TENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 37899999998543 111111 22222221 1367899999988877654
No 465
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=92.76 E-value=0.48 Score=48.36 Aligned_cols=61 Identities=13% Similarity=0.192 Sum_probs=35.1
Q ss_pred HHHHHhCCCcEEEEEecCCCC-ChhhHH-HhhcccCCCC-C-CcEEEEEcCchhhhhhcCCcceeeC
Q 043647 274 QLREAVAGKRFLIVLDDVWSK-NYSLWN-TLKSPFRAGA-S-GSKILVTTCSTDVALTVGTAEYYNL 336 (1096)
Q Consensus 274 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~-~l~~~l~~~~-~-gs~iivTtR~~~v~~~~~~~~~~~l 336 (1096)
.+...+..+.-++++|+.... +....+ .+...+.... . |..||++|.+.+.... ...++.+
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l 195 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRV 195 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEE
Confidence 345566678889999998543 222333 3444443322 2 5678888888776543 3344443
No 466
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.75 E-value=0.067 Score=54.53 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
+|+|.|+.|+||||+|+.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988764
No 467
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.74 E-value=0.34 Score=50.86 Aligned_cols=84 Identities=21% Similarity=0.267 Sum_probs=48.6
Q ss_pred eEEEEEcCCCCcHHHHH-HHHhccccccccCcE-EEEEecCcc-ChHHHHHHHHHhccCCC------CCCCc-HHH----
Q 043647 205 SLIPIVGMAGVGKTTLA-RVAFDDKAVEMFNLR-SWVCVSDDF-DILRITKSILESITFSP------NSLKD-LNQ---- 270 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~-~~~---- 270 (1096)
+-++|+|..|+|||+|| ..+.+.. .-+.+ +++-+++.. +..++.+++...=.... ...+. ...
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~---~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~ 146 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK---GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAP 146 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc---CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHH
Confidence 56899999999999996 5555432 23444 566666653 45666666654321110 01111 111
Q ss_pred -HHHHHHHHh--CCCcEEEEEecC
Q 043647 271 -IQVQLREAV--AGKRFLIVLDDV 291 (1096)
Q Consensus 271 -~~~~l~~~l--~~kr~LlVlDdv 291 (1096)
....+.+++ +++.+|+++||+
T Consensus 147 ~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 147 YTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHCCCCEEEEEcCh
Confidence 112233433 689999999999
No 468
>PRK13947 shikimate kinase; Provisional
Probab=92.71 E-value=0.085 Score=52.32 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
.|.|+|++|+||||+|+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998754
No 469
>PRK08149 ATP synthase SpaL; Validated
Probab=92.71 E-value=0.43 Score=53.86 Aligned_cols=85 Identities=16% Similarity=0.263 Sum_probs=50.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecC-ccChHHHHHHHHHhccCCC-------CCCCcH-----HH
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSD-DFDILRITKSILESITFSP-------NSLKDL-----NQ 270 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~-----~~ 270 (1096)
-..++|+|..|+|||||++.++.... .+.++...+.. ..++.++..+......... .+.... ..
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~---~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~ 227 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE---ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAAL 227 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC---CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHH
Confidence 35789999999999999999987432 23333333433 3355666666665432211 111111 11
Q ss_pred HHHHHHHHh--CCCcEEEEEecC
Q 043647 271 IQVQLREAV--AGKRFLIVLDDV 291 (1096)
Q Consensus 271 ~~~~l~~~l--~~kr~LlVlDdv 291 (1096)
....+.+++ +||++|+++||+
T Consensus 228 ~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 228 VATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHcCCCEEEEccch
Confidence 222344444 689999999999
No 470
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=92.70 E-value=0.85 Score=47.34 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
-.+++|+|+.|.|||||++.+..-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998864
No 471
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.69 E-value=0.34 Score=51.45 Aligned_cols=87 Identities=13% Similarity=0.085 Sum_probs=47.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCC-----CC--CCCcHHHHHHH
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFS-----PN--SLKDLNQIQVQ 274 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~--~~~~~~~~~~~ 274 (1096)
.+..+|.|.|.+|+|||||+..+.+..... . .++.+ ..+..+..+ .+.+...+.. .. ...+...+...
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~-~~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~A 176 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDS-V-PCAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIADA 176 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccC-C-CEEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHHH
Confidence 357899999999999999998888753322 1 22222 222222221 1223333221 11 11233444555
Q ss_pred HHHHhCCCcEEEEEecCCC
Q 043647 275 LREAVAGKRFLIVLDDVWS 293 (1096)
Q Consensus 275 l~~~l~~kr~LlVlDdv~~ 293 (1096)
+.......--++|+++|-.
T Consensus 177 l~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 177 APRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHhhcCCcEEEEECCCC
Confidence 5555444456778999853
No 472
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.68 E-value=0.11 Score=50.55 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcccc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKA 229 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 229 (1096)
...+++|+|..|+|||||++.+.....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 467999999999999999999887543
No 473
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.64 E-value=0.45 Score=48.19 Aligned_cols=40 Identities=30% Similarity=0.340 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcccccc--cc-------CcEEEEEecCc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVE--MF-------NLRSWVCVSDD 244 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~--~f-------~~~~wv~~~~~ 244 (1096)
.++.|+|++|+||||++..+....... .| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 488999999999999998877655432 22 36778876655
No 474
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.64 E-value=0.18 Score=46.69 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 185 EDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 185 ~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
++.+++.+.|...- ..-.+|.+.|.-|+||||+++.+....
T Consensus 6 ~~t~~l~~~l~~~l---~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPL---DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhC---CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 44555555553321 123589999999999999999999753
No 475
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.62 E-value=0.087 Score=52.70 Aligned_cols=23 Identities=43% Similarity=0.515 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|+||||+|+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998764
No 476
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.61 E-value=0.28 Score=53.65 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcccc
Q 043647 207 IPIVGMAGVGKTTLARVAFDDKA 229 (1096)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~~ 229 (1096)
+.+.|++|.||||+++.+.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999998886543
No 477
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=92.60 E-value=0.32 Score=50.55 Aligned_cols=113 Identities=19% Similarity=0.314 Sum_probs=65.3
Q ss_pred CccccchHHHHHHHHHHhcC--CCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc--ccCcEEEEEecCccChHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRD--EPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE--MFNLRSWVCVSDDFDILRITKS 253 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~f~~~~wv~~~~~~~~~~~~~~ 253 (1096)
..++|..-.++.|+..+..- .....++-+++.+|..|+||.-.|+.++++.... +-+. ...
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~---------------V~~ 146 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPF---------------VHH 146 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchh---------------HHH
Confidence 45778777777777666432 1234678899999999999999998888764322 1111 111
Q ss_pred HHHhccCCCCCCCcH----HHHHHHHHHHh-CCCcEEEEEecCCCCChhhHHHhhcccC
Q 043647 254 ILESITFSPNSLKDL----NQIQVQLREAV-AGKRFLIVLDDVWSKNYSLWNTLKSPFR 307 (1096)
Q Consensus 254 i~~~l~~~~~~~~~~----~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 307 (1096)
+.....-. ..... +++...+++-. .-+|-|+|+|+|+.....-.+.+...+.
T Consensus 147 fvat~hFP--~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 147 FVATLHFP--HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred hhhhccCC--ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 11111111 11112 23333344333 3579999999997765555666555444
No 478
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=92.58 E-value=0.3 Score=45.98 Aligned_cols=37 Identities=19% Similarity=0.139 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEe
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCV 241 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~ 241 (1096)
--+.|+|-||+||+++.+..|.-...+.+...+||+.
T Consensus 21 iK~vivGng~VGKssmiqryCkgifTkdykktIgvdf 57 (246)
T KOG4252|consen 21 IKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDF 57 (246)
T ss_pred EEEEEECCCccchHHHHHHHhccccccccccccchhh
Confidence 3467999999999999999997655556777888854
No 479
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.58 E-value=0.38 Score=53.77 Aligned_cols=82 Identities=22% Similarity=0.195 Sum_probs=47.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCC-----CCCcHHHHHHHHHH
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPN-----SLKDLNQIQVQLRE 277 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 277 (1096)
.-.++.|.|.+|+|||||+.+++..... .-..++|++..+. ..++. .-+..++.... ...+.+.+...+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~-~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~- 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE- 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH-
Confidence 3469999999999999999888865332 2245777765432 33332 22344443221 1123344433332
Q ss_pred HhCCCcEEEEEecC
Q 043647 278 AVAGKRFLIVLDDV 291 (1096)
Q Consensus 278 ~l~~kr~LlVlDdv 291 (1096)
+.+.-++|+|.+
T Consensus 156 --~~~~~lVVIDSI 167 (372)
T cd01121 156 --ELKPDLVIIDSI 167 (372)
T ss_pred --hcCCcEEEEcch
Confidence 235567888877
No 480
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.56 E-value=0.21 Score=48.70 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcccc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKA 229 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~ 229 (1096)
+.|-+.|.+|+||||+|+.+....+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHH
Confidence 4678899999999999998887543
No 481
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=1.8 Score=43.78 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=37.8
Q ss_pred ccccchHHHHHHHHHHhcCCC--------CCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 179 AVFGRDEDKAKILEMVLRDEP--------TDANFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~~--------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
++=|-+..++++++.+.-+-. +-..++-+..+|++|.|||-+|++.+..
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaq 228 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQ 228 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHh
Confidence 466889999999988754321 1234567889999999999999998874
No 482
>PRK13949 shikimate kinase; Provisional
Probab=92.53 E-value=0.092 Score=51.69 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
-|.|+|+.|+||||+++.++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998754
No 483
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.51 E-value=0.14 Score=49.56 Aligned_cols=25 Identities=40% Similarity=0.606 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
-.++.|.|+.|+|||||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3689999999999999999999864
No 484
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.51 E-value=1.6 Score=41.50 Aligned_cols=84 Identities=19% Similarity=0.209 Sum_probs=51.5
Q ss_pred ChHHHHHHHHHhccCCC------CCCCcHHHHHHHHHHHhCCCcEEEEEecCC----CCChhhHHHhhcccCCCCCCcEE
Q 043647 246 DILRITKSILESITFSP------NSLKDLNQIQVQLREAVAGKRFLIVLDDVW----SKNYSLWNTLKSPFRAGASGSKI 315 (1096)
Q Consensus 246 ~~~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~----~~~~~~~~~l~~~l~~~~~gs~i 315 (1096)
+.....+..+.+++... .....-++-.-.|.+.+...+-+++-|.-- ........++...+ ....|+..
T Consensus 122 ~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~l-nre~G~Tl 200 (228)
T COG4181 122 DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFAL-NRERGTTL 200 (228)
T ss_pred cHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHH-hhhcCceE
Confidence 45666777777776542 233334454556777788888888888542 22222333343333 23468888
Q ss_pred EEEcCchhhhhhcCC
Q 043647 316 LVTTCSTDVALTVGT 330 (1096)
Q Consensus 316 ivTtR~~~v~~~~~~ 330 (1096)
+..|.++.+|..+..
T Consensus 201 VlVTHD~~LA~Rc~R 215 (228)
T COG4181 201 VLVTHDPQLAARCDR 215 (228)
T ss_pred EEEeCCHHHHHhhhh
Confidence 888899999887643
No 485
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.49 E-value=0.081 Score=50.85 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
+|.|+|+.|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998753
No 486
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.48 E-value=0.094 Score=49.91 Aligned_cols=20 Identities=50% Similarity=0.763 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 043647 206 LIPIVGMAGVGKTTLARVAF 225 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~ 225 (1096)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999998887
No 487
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.48 E-value=1.1 Score=47.03 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|.|||||++.+..-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999988764
No 488
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.45 E-value=0.099 Score=52.36 Aligned_cols=23 Identities=43% Similarity=0.715 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
++|+|+|+.|+||||||+.+...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47999999999999999999974
No 489
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.43 E-value=0.68 Score=55.49 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
-..++|+|+.|.|||||++.+..-
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999764
No 490
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=92.43 E-value=0.17 Score=54.79 Aligned_cols=155 Identities=16% Similarity=0.211 Sum_probs=80.5
Q ss_pred ccccchHHHHHHHHHHhcCCC------------CCCCceEEEEEcCCCCcHHHHHHHHhcccccc---cc--C-cEEEE-
Q 043647 179 AVFGRDEDKAKILEMVLRDEP------------TDANFSLIPIVGMAGVGKTTLARVAFDDKAVE---MF--N-LRSWV- 239 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~~------------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~f--~-~~~wv- 239 (1096)
+..|-..+...|.+....... ....--+++|+|..|.||||+.+.+....... .| + +.+-|
T Consensus 372 d~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp 451 (593)
T COG2401 372 DIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVP 451 (593)
T ss_pred ecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecc
Confidence 345666777777766532111 01234589999999999999998887532211 11 0 11111
Q ss_pred ----E--ec----CccChHHHHHHHHHhcc-------------CCCC--------CCCcHHHHHHHHHHHhCCCcEEEEE
Q 043647 240 ----C--VS----DDFDILRITKSILESIT-------------FSPN--------SLKDLNQIQVQLREAVAGKRFLIVL 288 (1096)
Q Consensus 240 ----~--~~----~~~~~~~~~~~i~~~l~-------------~~~~--------~~~~~~~~~~~l~~~l~~kr~LlVl 288 (1096)
. +. ..++-..++.++....+ ..+. +..+-+.-..+|.+.++.+.-+++.
T Consensus 452 ~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~i 531 (593)
T COG2401 452 KNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLI 531 (593)
T ss_pred ccchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEh
Confidence 0 11 11222234444333322 2211 1111222234577778888888999
Q ss_pred ecCCCC-ChhhHHHhhcccCCC--CCCcEEEEEcCchhhhhhcCCcce
Q 043647 289 DDVWSK-NYSLWNTLKSPFRAG--ASGSKILVTTCSTDVALTVGTAEY 333 (1096)
Q Consensus 289 Ddv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~~~~~~~~ 333 (1096)
|..... +...-..+...+... ..|..+++.|+.+++...+.++..
T Consensus 532 DEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~l 579 (593)
T COG2401 532 DEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTL 579 (593)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCcee
Confidence 987432 111111222222221 257788888888999888766543
No 491
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=0.33 Score=52.95 Aligned_cols=82 Identities=26% Similarity=0.280 Sum_probs=51.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCC-----CCCcHHHHHHHHHHH
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPN-----SLKDLNQIQVQLREA 278 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~ 278 (1096)
-.+|.|-|-+|||||||..++..+...+. .+.+|+-.+ +..++ +--+++++.... ...+++.+...+.
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~--~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~-- 165 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG--KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELE-- 165 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC--cEEEEeCCc--CHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHH--
Confidence 46899999999999999999988654433 677765433 33222 223445553322 1234454444444
Q ss_pred hCCCcEEEEEecCCC
Q 043647 279 VAGKRFLIVLDDVWS 293 (1096)
Q Consensus 279 l~~kr~LlVlDdv~~ 293 (1096)
+.+.-++|+|-+..
T Consensus 166 -~~~p~lvVIDSIQT 179 (456)
T COG1066 166 -QEKPDLVVIDSIQT 179 (456)
T ss_pred -hcCCCEEEEeccce
Confidence 37888999999853
No 492
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=92.41 E-value=0.56 Score=55.50 Aligned_cols=136 Identities=13% Similarity=0.126 Sum_probs=74.0
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHH
Q 043647 177 EPAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 177 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
...++|+...++++.+.+..-.. ...-|.|+|..|+|||++|+.+++.... .-...+.|++..-.+ ..+-..+..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~---~~~pVlI~Ge~GtGK~~~A~~ih~~s~r-~~~p~v~v~c~~~~~-~~~e~~lfG 260 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA---SDLNVLILGETGVGKELVARAIHAASPR-ADKPLVYLNCAALPE-SLAESELFG 260 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC---CCCcEEEECCCCccHHHHHHHHHHhCCc-CCCCeEEEEcccCCh-HHHHHHhcC
Confidence 45689999999888887754322 2346889999999999999999875322 112334555554322 111122221
Q ss_pred hccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCCC-----------CCcEEEEEcCch
Q 043647 257 SITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGA-----------SGSKILVTTCST 322 (1096)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~~ 322 (1096)
...+.-.... .+. .-.+. ..+.. -|+||+|..-.......+...+..+. ...|||.||...
T Consensus 261 ~~~g~~~ga~-~~~-~g~~~--~a~gG-tL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 261 HVKGAFTGAI-SNR-SGKFE--LADGG-TLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred ccccccCCCc-ccC-Ccchh--hcCCC-EEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 1111000000 000 00111 12223 36899998776666666666554321 145888888543
No 493
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.40 E-value=0.46 Score=53.62 Aligned_cols=85 Identities=19% Similarity=0.235 Sum_probs=48.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecC-ccChHHHHHHHHHhccCCC-------CCCCcHHH-----
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSD-DFDILRITKSILESITFSP-------NSLKDLNQ----- 270 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~~----- 270 (1096)
-..++|+|..|+|||||++.+...... +....+.+.. ...+.++.+..+..-+... .+......
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~~---~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTDA---DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCC---CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 357999999999999999988875322 2222222333 3345555555444322111 01111111
Q ss_pred HHHHHHHHh--CCCcEEEEEecC
Q 043647 271 IQVQLREAV--AGKRFLIVLDDV 291 (1096)
Q Consensus 271 ~~~~l~~~l--~~kr~LlVlDdv 291 (1096)
....+.+++ +++++|+++||+
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 122244555 689999999998
No 494
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.40 E-value=0.18 Score=54.73 Aligned_cols=49 Identities=20% Similarity=0.149 Sum_probs=33.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHH
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKS 253 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 253 (1096)
.+++.+.|.||+||||+|.+..-.....+ ..+.-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g-~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG-KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC-CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999977554332223 44677776666666555544
No 495
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.39 E-value=0.11 Score=48.82 Aligned_cols=25 Identities=36% Similarity=0.656 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
.++++|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5899999999999999997776543
No 496
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.39 E-value=1.3 Score=46.98 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|..|.|||||.+.++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 29 KITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999853
No 497
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.38 E-value=1.3 Score=48.40 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
-.+++|+|..|.|||||++.++..
T Consensus 71 Ge~~~IvG~nGsGKSTLl~~L~Gl 94 (305)
T PRK14264 71 KSVTALIGPSGCGKSTFLRCLNRM 94 (305)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999854
No 498
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=92.38 E-value=0.22 Score=49.70 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=31.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFD 226 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (1096)
.+++|.+..+..+.-.... ..-+.++|.+|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG-------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG-------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC-------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC-------CCCeEEECCCCCCHHHHHHHHHH
Confidence 4678988888887766643 24689999999999999988875
No 499
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.36 E-value=0.018 Score=55.87 Aligned_cols=67 Identities=19% Similarity=0.232 Sum_probs=48.0
Q ss_pred CcCCCCccEEEeccCCCCcccCcCCCC-CCCCcCeEeeccCCCCCCCCCCCc--cccccceeeccCcchh
Q 043647 1020 MTFPSSLTELVIVRFPKLKYLSSNGFR-NLAFLEYLQIRDCPKLTSFPEAGL--PSSLLELYINDYPLMT 1086 (1096)
Q Consensus 1020 ~~~~~sL~~L~l~~c~~l~~l~~~~l~-~l~~L~~L~l~~c~~l~~l~~~~l--~~~L~~L~i~~c~~L~ 1086 (1096)
+..+++++.|.+.+|..+.+-.-+.+. -.++|+.|+|++|++|++..-..+ .++|+.|.+++-|...
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 356778888888998876532211222 348999999999999998554333 6799999999887543
No 500
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.34 E-value=0.14 Score=54.95 Aligned_cols=31 Identities=32% Similarity=0.515 Sum_probs=25.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccC
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFN 234 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~ 234 (1096)
-+-|..+|++|.|||-||++|+.+-...+|.
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc~tTFFN 275 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATECGTTFFN 275 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhhcCeEEE
Confidence 4678899999999999999999875544444
Done!