Query 043647
Match_columns 1096
No_of_seqs 671 out of 4652
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 11:46:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043647.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043647hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 7.7E-41 2.6E-45 397.3 21.6 290 177-482 127-473 (549)
2 3rgz_A Protein brassinosteroid 100.0 1.3E-34 4.3E-39 360.7 21.7 259 812-1095 414-754 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 7E-32 2.4E-36 333.5 41.1 547 496-1084 23-621 (680)
4 3rgz_A Protein brassinosteroid 100.0 2.9E-34 1E-38 357.4 19.4 498 551-1084 121-716 (768)
5 1vt4_I APAF-1 related killer D 100.0 6.7E-34 2.3E-38 337.2 19.1 262 179-474 129-437 (1221)
6 3vq2_A TLR4, TOLL-like recepto 100.0 5.4E-33 1.8E-37 338.8 27.3 489 547-1084 47-557 (606)
7 3sfz_A APAF-1, apoptotic pepti 100.0 4E-33 1.4E-37 370.4 24.8 287 175-480 121-452 (1249)
8 3t6q_A CD180 antigen; protein- 100.0 1E-31 3.5E-36 327.5 25.7 464 547-1084 48-559 (606)
9 1ziw_A TOLL-like receptor 3; i 100.0 3.5E-31 1.2E-35 327.2 29.3 517 499-1065 50-625 (680)
10 3vq2_A TLR4, TOLL-like recepto 100.0 5.8E-31 2E-35 320.8 29.8 508 495-1064 29-560 (606)
11 3t6q_A CD180 antigen; protein- 100.0 4.4E-30 1.5E-34 313.0 30.4 460 556-1083 33-534 (606)
12 2z81_A CD282 antigen, TOLL-lik 100.0 5.1E-30 1.7E-34 308.6 25.6 444 551-1064 45-512 (549)
13 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-28 3.9E-33 310.3 38.6 464 548-1084 40-559 (844)
14 1z6t_A APAF-1, apoptotic prote 100.0 4.3E-30 1.5E-34 310.9 24.5 281 177-478 123-450 (591)
15 4eco_A Uncharacterized protein 100.0 5.5E-30 1.9E-34 311.2 22.4 390 589-1086 193-633 (636)
16 2z63_A TOLL-like receptor 4, v 100.0 3.4E-29 1.1E-33 303.2 28.3 461 548-1083 44-529 (570)
17 4ecn_A Leucine-rich repeat pro 100.0 1.4E-29 4.9E-34 311.3 22.7 291 589-950 435-763 (876)
18 3j0a_A TOLL-like receptor 5; m 100.0 3.9E-28 1.3E-32 305.5 35.9 469 554-1083 22-537 (844)
19 2z81_A CD282 antigen, TOLL-lik 100.0 8.5E-28 2.9E-32 289.2 28.9 430 556-1083 26-508 (549)
20 4ecn_A Leucine-rich repeat pro 100.0 5.2E-28 1.8E-32 297.5 24.2 432 556-1086 323-873 (876)
21 2z7x_B TOLL-like receptor 1, v 100.0 3E-27 1E-31 282.1 29.3 423 556-1058 21-477 (520)
22 2z63_A TOLL-like receptor 4, v 100.0 6.5E-28 2.2E-32 291.9 23.4 491 496-1067 26-536 (570)
23 4eco_A Uncharacterized protein 100.0 1.5E-28 5.1E-33 298.5 15.9 395 567-1063 194-633 (636)
24 4g8a_A TOLL-like receptor 4; l 100.0 3.4E-27 1.2E-31 290.0 27.2 492 546-1083 66-578 (635)
25 2z7x_B TOLL-like receptor 1, v 99.9 1.3E-27 4.3E-32 285.3 19.1 434 523-1035 21-479 (520)
26 1jl5_A Outer protein YOPM; leu 99.9 1.3E-26 4.3E-31 268.6 26.5 388 554-1083 9-427 (454)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-26 3.9E-31 279.2 24.9 425 556-1060 52-508 (562)
28 4g8a_A TOLL-like receptor 4; l 99.9 2.1E-24 7.1E-29 265.2 32.5 505 494-1060 48-578 (635)
29 1o6v_A Internalin A; bacterial 99.9 9.6E-25 3.3E-29 255.7 26.2 347 555-1041 45-391 (466)
30 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.3E-24 4.5E-29 261.3 27.0 433 523-1035 52-508 (562)
31 3v47_A TOLL-like receptor 5B a 99.9 2.4E-24 8.1E-29 252.5 20.3 138 892-1066 275-412 (455)
32 3bz5_A Internalin-J, INLJ; leu 99.9 9.6E-24 3.3E-28 244.6 23.9 96 551-655 37-132 (457)
33 1o6v_A Internalin A; bacterial 99.9 1.9E-23 6.5E-28 244.7 25.8 330 552-1016 64-393 (466)
34 1jl5_A Outer protein YOPM; leu 99.9 2.1E-23 7.2E-28 241.6 24.4 389 548-1061 26-428 (454)
35 3bz5_A Internalin-J, INLJ; leu 99.9 1.3E-22 4.4E-27 235.2 24.4 77 572-655 35-111 (457)
36 3v47_A TOLL-like receptor 5B a 99.9 7.5E-23 2.6E-27 239.7 22.6 358 556-1035 30-406 (455)
37 2id5_A Lingo-1, leucine rich r 99.9 1.4E-21 4.8E-26 230.1 29.3 158 888-1060 172-331 (477)
38 4fmz_A Internalin; leucine ric 99.9 1.8E-22 6.3E-27 227.0 19.0 304 553-951 41-344 (347)
39 4fmz_A Internalin; leucine ric 99.9 3E-22 1E-26 225.2 19.1 126 575-767 40-165 (347)
40 3o6n_A APL1; leucine-rich repe 99.9 8.6E-22 2.9E-26 225.2 21.6 89 555-645 44-135 (390)
41 3oja_B Anopheles plasmodium-re 99.9 3E-21 1E-25 233.0 21.6 301 555-1008 50-356 (597)
42 2id5_A Lingo-1, leucine rich r 99.9 7.4E-21 2.5E-25 223.9 20.6 294 556-951 32-331 (477)
43 3o6n_A APL1; leucine-rich repe 99.8 1.5E-20 5.1E-25 214.9 20.6 303 522-951 44-350 (390)
44 4fcg_A Uncharacterized protein 99.8 8E-21 2.7E-25 210.4 16.4 139 554-745 79-217 (328)
45 3oja_B Anopheles plasmodium-re 99.8 3.9E-20 1.3E-24 223.4 21.3 289 545-951 64-356 (597)
46 1xku_A Decorin; proteoglycan, 99.8 9.4E-19 3.2E-23 194.9 23.0 292 556-1034 31-329 (330)
47 2ft3_A Biglycan; proteoglycan, 99.8 1E-18 3.6E-23 194.6 22.2 86 556-645 33-120 (332)
48 2ft3_A Biglycan; proteoglycan, 99.8 3.3E-18 1.1E-22 190.6 20.1 73 579-655 33-107 (332)
49 3ogk_B Coronatine-insensitive 99.8 1.5E-20 5.1E-25 228.3 0.0 397 550-1038 67-526 (592)
50 3g06_A SSPH2 (leucine-rich rep 99.8 1.1E-17 3.7E-22 199.3 24.3 257 556-952 40-296 (622)
51 1ogq_A PGIP-2, polygalacturona 99.8 4E-19 1.4E-23 195.6 11.0 100 556-655 50-154 (313)
52 4fcg_A Uncharacterized protein 99.8 2.5E-18 8.5E-23 190.4 15.4 161 551-773 99-269 (328)
53 1xku_A Decorin; proteoglycan, 99.7 4.5E-17 1.5E-21 181.3 21.1 171 556-767 52-226 (330)
54 3g06_A SSPH2 (leucine-rich rep 99.7 3E-16 1E-20 186.9 25.6 112 709-848 40-151 (622)
55 3zyj_A Leucine-rich repeat-con 99.7 2.5E-16 8.5E-21 182.7 23.1 217 839-1083 65-290 (440)
56 2z80_A TOLL-like receptor 2, v 99.7 4.9E-17 1.7E-21 182.8 16.6 62 891-953 248-314 (353)
57 3ogk_B Coronatine-insensitive 99.7 1.3E-19 4.5E-24 219.9 -4.9 392 552-1007 108-548 (592)
58 3zyi_A Leucine-rich repeat-con 99.7 2.4E-16 8.4E-21 183.5 22.9 217 839-1083 76-301 (452)
59 2p1m_B Transport inhibitor res 99.7 3.6E-19 1.2E-23 216.3 -3.7 398 551-1036 61-518 (594)
60 3zyi_A Leucine-rich repeat-con 99.7 4.5E-16 1.5E-20 181.2 21.9 84 557-644 55-140 (452)
61 2xwt_C Thyrotropin receptor; s 99.7 3.6E-16 1.2E-20 164.9 18.5 183 887-1085 50-239 (239)
62 1ogq_A PGIP-2, polygalacturona 99.7 2.2E-17 7.4E-22 181.7 9.2 232 812-1086 72-305 (313)
63 2z66_A Variable lymphocyte rec 99.7 3.2E-16 1.1E-20 172.4 17.7 87 560-650 11-101 (306)
64 3zyj_A Leucine-rich repeat-con 99.7 1.8E-15 6.3E-20 175.4 23.9 158 855-1060 132-290 (440)
65 3o53_A Protein LRIM1, AGAP0063 99.7 1.1E-16 3.7E-21 176.7 8.8 85 547-637 25-110 (317)
66 2p1m_B Transport inhibitor res 99.7 2.1E-18 7.3E-23 209.4 -5.4 182 554-767 128-324 (594)
67 1z7x_W Ribonuclease inhibitor; 99.6 3.4E-19 1.2E-23 209.0 -13.8 88 549-637 21-124 (461)
68 1ozn_A Reticulon 4 receptor; N 99.6 4.6E-15 1.6E-19 161.1 19.4 203 832-1058 25-234 (285)
69 2z66_A Variable lymphocyte rec 99.6 4.4E-15 1.5E-19 163.2 18.5 245 712-1059 10-258 (306)
70 1z7x_W Ribonuclease inhibitor; 99.6 1E-18 3.6E-23 204.9 -11.3 100 556-656 3-119 (461)
71 2z80_A TOLL-like receptor 2, v 99.6 5.5E-15 1.9E-19 166.0 19.2 39 1044-1083 272-312 (353)
72 3oja_A Leucine-rich immune mol 99.6 5.8E-16 2E-20 181.0 9.6 80 552-637 30-110 (487)
73 1p9a_G Platelet glycoprotein I 99.6 1.6E-14 5.5E-19 156.5 18.7 154 887-1059 50-205 (290)
74 3qfl_A MLA10; coiled-coil, (CC 99.6 1.7E-15 5.7E-20 135.7 8.4 80 11-90 2-83 (115)
75 3o53_A Protein LRIM1, AGAP0063 99.6 3.8E-16 1.3E-20 172.3 4.3 178 858-1086 119-300 (317)
76 1ozn_A Reticulon 4 receptor; N 99.6 1.1E-14 3.7E-19 158.2 15.6 196 815-1034 31-235 (285)
77 1wwl_A Monocyte differentiatio 99.6 1.8E-16 6.2E-21 174.5 1.4 88 552-643 39-137 (312)
78 2xwt_C Thyrotropin receptor; s 99.6 3.6E-14 1.2E-18 149.5 18.9 203 832-1061 25-238 (239)
79 4ay9_X Follicle-stimulating ho 99.6 5.5E-14 1.9E-18 157.2 20.9 125 916-1058 128-255 (350)
80 4ay9_X Follicle-stimulating ho 99.6 7E-14 2.4E-18 156.4 19.4 234 820-1081 13-255 (350)
81 2o6q_A Variable lymphocyte rec 99.5 1.6E-13 5.6E-18 147.3 20.6 157 887-1060 56-216 (270)
82 3oja_A Leucine-rich immune mol 99.5 6E-15 2.1E-19 172.4 8.3 129 888-1057 140-270 (487)
83 2o6q_A Variable lymphocyte rec 99.5 4.2E-13 1.4E-17 144.1 20.5 191 818-1035 18-216 (270)
84 4glp_A Monocyte differentiatio 99.5 7.2E-14 2.5E-18 153.6 14.0 204 859-1084 91-306 (310)
85 1h6u_A Internalin H; cell adhe 99.5 7E-14 2.4E-18 153.1 13.4 195 836-1067 39-234 (308)
86 2z62_A TOLL-like receptor 4, v 99.5 1.6E-13 5.6E-18 148.0 15.6 201 832-1058 21-233 (276)
87 3rfs_A Internalin B, repeat mo 99.5 3.1E-13 1.1E-17 145.3 16.1 174 837-1060 40-216 (272)
88 1h6u_A Internalin H; cell adhe 99.5 4.1E-14 1.4E-18 155.0 9.3 95 555-655 40-134 (308)
89 1p9a_G Platelet glycoprotein I 99.5 7.8E-13 2.7E-17 143.2 18.4 193 813-1035 7-206 (290)
90 2z62_A TOLL-like receptor 4, v 99.5 4.2E-13 1.4E-17 144.8 16.2 195 859-1081 28-233 (276)
91 2qen_A Walker-type ATPase; unk 99.5 8.4E-13 2.9E-17 148.2 17.7 236 176-439 10-293 (350)
92 2ast_B S-phase kinase-associat 99.4 6.7E-15 2.3E-19 164.3 -0.6 202 556-797 70-282 (336)
93 1wwl_A Monocyte differentiatio 99.4 3.8E-13 1.3E-17 147.8 12.5 179 889-1083 118-307 (312)
94 1w5s_A Origin recognition comp 99.4 5.1E-13 1.7E-17 153.7 13.4 255 177-441 21-321 (412)
95 3rfs_A Internalin B, repeat mo 99.4 2.5E-12 8.7E-17 138.1 16.2 177 855-1083 37-216 (272)
96 3m19_A Variable lymphocyte rec 99.4 3.7E-12 1.3E-16 135.1 17.2 174 859-1060 14-190 (251)
97 4glp_A Monocyte differentiatio 99.4 1.7E-12 5.7E-17 142.6 13.8 185 856-1063 114-307 (310)
98 1h6t_A Internalin B; cell adhe 99.4 7.9E-13 2.7E-17 143.3 11.0 168 553-767 43-210 (291)
99 3m19_A Variable lymphocyte rec 99.4 5.9E-12 2E-16 133.5 17.2 153 859-1035 35-190 (251)
100 2fna_A Conserved hypothetical 99.4 5.1E-12 1.8E-16 142.2 17.3 238 176-439 11-301 (357)
101 2ast_B S-phase kinase-associat 99.4 3.5E-14 1.2E-18 158.5 -2.3 245 817-1089 48-309 (336)
102 1h6t_A Internalin B; cell adhe 99.3 2.2E-12 7.6E-17 139.8 11.5 175 855-1066 42-216 (291)
103 4ezg_A Putative uncharacterize 99.3 2E-12 7E-17 131.3 9.4 150 553-767 41-191 (197)
104 1m9s_A Internalin B; cell inva 99.3 3.6E-12 1.2E-16 151.7 11.8 169 553-768 40-208 (605)
105 3cvr_A Invasion plasmid antige 99.3 4.3E-11 1.5E-15 140.6 17.3 175 839-1060 60-241 (571)
106 2qby_B CDC6 homolog 3, cell di 99.3 1.3E-10 4.5E-15 132.0 20.3 249 178-439 20-295 (384)
107 1m9s_A Internalin B; cell inva 99.3 9.8E-12 3.3E-16 147.9 10.6 175 855-1066 39-213 (605)
108 4ezg_A Putative uncharacterize 99.2 2.1E-11 7.2E-16 123.7 11.0 150 889-1083 41-192 (197)
109 3cvr_A Invasion plasmid antige 99.2 5.5E-11 1.9E-15 139.7 16.0 87 556-655 59-145 (571)
110 1xeu_A Internalin C; cellular 99.2 7E-12 2.4E-16 133.5 6.4 146 552-767 37-182 (263)
111 2v9t_B SLIT homolog 2 protein 99.2 1.2E-10 4.2E-15 120.2 14.5 82 559-644 14-97 (220)
112 2v1u_A Cell division control p 99.2 4.7E-10 1.6E-14 127.6 20.8 248 178-438 19-300 (387)
113 1xeu_A Internalin C; cellular 99.2 4.4E-11 1.5E-15 127.3 10.9 144 890-1059 39-182 (263)
114 2v9t_B SLIT homolog 2 protein 99.2 1.5E-10 5.3E-15 119.4 14.5 131 892-1060 32-163 (220)
115 3e6j_A Variable lymphocyte rec 99.2 1.6E-10 5.4E-15 120.2 14.4 75 560-637 23-99 (229)
116 1njg_A DNA polymerase III subu 99.2 4.9E-10 1.7E-14 118.5 18.3 197 178-389 23-231 (250)
117 2ca6_A RAN GTPase-activating p 99.2 1.1E-12 3.6E-17 149.3 -3.2 84 553-637 29-133 (386)
118 3e6j_A Variable lymphocyte rec 99.2 2.5E-10 8.5E-15 118.7 15.1 130 892-1060 40-170 (229)
119 2qby_A CDC6 homolog 1, cell di 99.1 6.3E-10 2.2E-14 126.5 18.7 251 177-439 19-297 (386)
120 3goz_A Leucine-rich repeat-con 99.1 1.2E-11 4E-16 139.1 3.1 93 548-642 14-124 (362)
121 2ca6_A RAN GTPase-activating p 99.1 2.1E-12 7.3E-17 146.8 -3.1 237 518-798 27-314 (386)
122 2v70_A SLIT-2, SLIT homolog 2 99.1 3.6E-10 1.2E-14 116.6 13.5 93 559-655 14-110 (220)
123 2v70_A SLIT-2, SLIT homolog 2 99.1 3.6E-10 1.2E-14 116.6 13.4 129 893-1060 33-164 (220)
124 3goz_A Leucine-rich repeat-con 99.1 4.6E-12 1.6E-16 142.4 -1.6 77 560-637 2-91 (362)
125 2ell_A Acidic leucine-rich nuc 99.1 7.6E-11 2.6E-15 116.2 6.9 99 554-655 22-125 (168)
126 2o6s_A Variable lymphocyte rec 99.1 4.8E-10 1.6E-14 114.9 12.4 65 992-1067 119-183 (208)
127 2ell_A Acidic leucine-rich nuc 99.1 1.5E-10 5.2E-15 114.0 8.3 110 548-660 41-157 (168)
128 2je0_A Acidic leucine-rich nuc 99.1 1.1E-10 3.7E-15 112.4 6.6 105 549-656 35-146 (149)
129 2xot_A Amphoterin-induced prot 99.1 4.5E-10 1.5E-14 125.9 11.6 54 894-949 41-97 (361)
130 2xot_A Amphoterin-induced prot 99.0 5E-10 1.7E-14 125.5 11.9 85 860-956 40-127 (361)
131 2chg_A Replication factor C sm 99.0 3.7E-09 1.3E-13 109.8 17.2 179 178-386 17-204 (226)
132 2o6s_A Variable lymphocyte rec 99.0 1.3E-09 4.4E-14 111.6 13.2 165 859-1060 28-196 (208)
133 1fnn_A CDC6P, cell division co 99.0 4E-09 1.4E-13 119.9 18.7 253 178-441 17-301 (389)
134 1a9n_A U2A', U2A'; complex (nu 99.0 1.6E-10 5.4E-15 114.8 6.1 88 552-643 15-104 (176)
135 4b8c_D Glucose-repressible alc 99.0 3E-10 1E-14 139.0 8.8 109 547-657 215-323 (727)
136 1a9n_A U2A', U2A'; complex (nu 99.0 4.3E-10 1.5E-14 111.7 7.6 104 554-660 40-150 (176)
137 2je0_A Acidic leucine-rich nuc 99.0 4.5E-10 1.5E-14 108.1 5.5 102 553-657 14-120 (149)
138 2wfh_A SLIT homolog 2 protein 98.9 4.2E-09 1.4E-13 105.9 12.6 81 559-643 13-94 (193)
139 3sb4_A Hypothetical leucine ri 98.9 7.4E-09 2.5E-13 114.4 14.5 99 963-1078 226-327 (329)
140 1dce_A Protein (RAB geranylger 98.9 1.1E-09 3.8E-14 129.5 8.3 95 557-655 442-538 (567)
141 1w8a_A SLIT protein; signaling 98.9 4E-09 1.4E-13 106.1 10.8 81 559-643 11-94 (192)
142 2wfh_A SLIT homolog 2 protein 98.9 2E-09 6.8E-14 108.3 8.1 99 556-656 31-132 (193)
143 4b8c_D Glucose-repressible alc 98.9 1.5E-09 5.3E-14 132.6 6.9 162 561-766 206-368 (727)
144 1sxj_B Activator 1 37 kDa subu 98.9 1.7E-08 5.9E-13 111.3 14.5 180 178-387 21-211 (323)
145 3sb4_A Hypothetical leucine ri 98.8 1.8E-08 6.2E-13 111.3 14.2 101 939-1056 225-328 (329)
146 1dce_A Protein (RAB geranylger 98.8 3.1E-09 1.1E-13 125.6 8.3 101 552-655 459-565 (567)
147 1w8a_A SLIT protein; signaling 98.8 7.3E-09 2.5E-13 104.2 9.0 99 557-656 30-132 (192)
148 1ds9_A Outer arm dynein; leuci 98.8 4.3E-11 1.5E-15 121.6 -7.8 66 570-637 39-104 (198)
149 2o6r_A Variable lymphocyte rec 98.8 4.5E-08 1.5E-12 97.1 13.4 124 918-1059 9-134 (177)
150 2r9u_A Variable lymphocyte rec 98.8 1.6E-08 5.3E-13 99.7 9.1 93 559-655 15-110 (174)
151 2o6r_A Variable lymphocyte rec 98.7 6.5E-08 2.2E-12 95.9 13.0 106 892-1035 28-135 (177)
152 2r9u_A Variable lymphocyte rec 98.7 1.2E-08 4.1E-13 100.6 7.4 90 556-647 33-125 (174)
153 3g39_A Variable lymphocyte rec 98.7 2E-08 6.9E-13 98.6 8.9 95 558-656 11-108 (170)
154 1ds9_A Outer arm dynein; leuci 98.7 4.7E-10 1.6E-14 113.8 -4.5 102 551-656 43-146 (198)
155 4fdw_A Leucine rich hypothetic 98.7 1.6E-06 5.6E-11 97.6 23.8 82 992-1081 295-379 (401)
156 4fdw_A Leucine rich hypothetic 98.7 5.4E-07 1.8E-11 101.5 18.6 190 860-1082 158-355 (401)
157 1iqp_A RFCS; clamp loader, ext 98.6 2.1E-07 7.1E-12 102.8 14.0 181 178-388 25-214 (327)
158 3g39_A Variable lymphocyte rec 98.6 6.9E-08 2.4E-12 94.8 8.7 82 555-637 29-113 (170)
159 1jr3_A DNA polymerase III subu 98.5 1.2E-06 4.2E-11 98.5 17.0 194 178-386 16-221 (373)
160 3te6_A Regulatory protein SIR3 98.5 6.8E-07 2.3E-11 95.5 13.2 170 179-352 21-211 (318)
161 4fs7_A Uncharacterized protein 98.5 7.4E-06 2.5E-10 92.7 22.5 60 992-1057 315-374 (394)
162 2chq_A Replication factor C sm 98.5 9.8E-07 3.3E-11 96.9 14.0 182 178-386 17-204 (319)
163 1hqc_A RUVB; extended AAA-ATPa 98.4 1.3E-06 4.4E-11 96.2 12.1 182 178-389 12-214 (324)
164 2ifg_A High affinity nerve gro 98.4 3.9E-07 1.3E-11 101.5 7.8 82 561-645 13-98 (347)
165 4fs7_A Uncharacterized protein 98.3 3E-05 1E-09 87.7 21.4 191 854-1081 180-375 (394)
166 2ifg_A High affinity nerve gro 98.3 9.8E-07 3.4E-11 98.2 8.2 85 552-637 27-114 (347)
167 1jbk_A CLPB protein; beta barr 98.2 2.9E-06 9.8E-11 85.3 10.0 46 178-228 22-67 (195)
168 1sxj_D Activator 1 41 kDa subu 98.2 9.4E-06 3.2E-10 90.4 13.9 193 178-385 37-234 (353)
169 3e4g_A ATP synthase subunit S, 98.2 6.6E-07 2.3E-11 86.1 2.9 70 993-1064 81-154 (176)
170 3bos_A Putative DNA replicatio 98.2 1.9E-06 6.6E-11 90.2 6.7 173 178-385 28-216 (242)
171 3pfi_A Holliday junction ATP-d 98.1 1.8E-05 6.2E-10 87.4 14.3 177 178-385 29-226 (338)
172 1sxj_A Activator 1 95 kDa subu 98.1 1.8E-05 6E-10 92.5 14.2 196 178-386 39-253 (516)
173 3uk6_A RUVB-like 2; hexameric 98.1 1.5E-05 5.2E-10 89.3 13.0 194 178-384 44-301 (368)
174 3pvs_A Replication-associated 98.1 9.5E-05 3.3E-09 83.9 19.3 176 178-384 26-213 (447)
175 2qz4_A Paraplegin; AAA+, SPG7, 98.1 3.4E-05 1.2E-09 81.7 14.6 181 178-380 6-215 (262)
176 4gt6_A Cell surface protein; l 98.1 0.00029 9.9E-09 79.5 22.8 61 992-1058 306-366 (394)
177 3h4m_A Proteasome-activating n 98.0 5.3E-05 1.8E-09 81.3 15.5 182 178-383 17-228 (285)
178 1a5t_A Delta prime, HOLB; zinc 98.0 0.00011 3.7E-09 80.5 17.8 182 184-385 8-204 (334)
179 2z4s_A Chromosomal replication 98.0 1.4E-05 4.8E-10 91.0 10.8 161 204-383 130-303 (440)
180 1sxj_E Activator 1 40 kDa subu 98.0 1.1E-05 3.6E-10 90.0 9.0 195 178-386 14-237 (354)
181 3e4g_A ATP synthase subunit S, 98.0 2.2E-06 7.6E-11 82.4 2.5 20 993-1012 135-154 (176)
182 1d2n_A N-ethylmaleimide-sensit 97.9 0.00018 6E-09 76.5 16.9 172 178-378 33-229 (272)
183 3syl_A Protein CBBX; photosynt 97.9 5.4E-05 1.9E-09 82.4 13.2 159 179-353 32-218 (309)
184 3u61_B DNA polymerase accessor 97.9 0.00011 3.7E-09 80.5 15.0 173 178-383 26-213 (324)
185 2ra8_A Uncharacterized protein 97.9 1.1E-05 3.6E-10 89.1 6.8 63 995-1059 250-317 (362)
186 2ra8_A Uncharacterized protein 97.9 1E-05 3.4E-10 89.3 6.3 135 812-950 168-317 (362)
187 4gt6_A Cell surface protein; l 97.9 0.0016 5.6E-08 73.2 24.7 104 911-1033 260-366 (394)
188 3n70_A Transport activator; si 97.9 3.2E-05 1.1E-09 73.2 8.3 114 179-321 2-115 (145)
189 1xwi_A SKD1 protein; VPS4B, AA 97.8 0.00068 2.3E-08 73.6 19.8 186 178-385 12-222 (322)
190 3eie_A Vacuolar protein sortin 97.8 0.0003 1E-08 76.7 16.2 182 178-383 18-225 (322)
191 1sxj_C Activator 1 40 kDa subu 97.8 0.00017 5.6E-09 79.5 13.8 176 178-383 25-209 (340)
192 2qp9_X Vacuolar protein sortin 97.7 0.00068 2.3E-08 74.7 17.9 185 178-385 51-260 (355)
193 4h09_A Hypothetical leucine ri 97.7 0.0031 1.1E-07 70.6 23.7 138 911-1070 212-352 (379)
194 2p65_A Hypothetical protein PF 97.7 2.6E-05 8.8E-10 77.6 5.8 46 178-228 22-67 (187)
195 3ec2_A DNA replication protein 97.7 5.6E-05 1.9E-09 74.7 7.2 120 183-321 19-142 (180)
196 3d8b_A Fidgetin-like protein 1 97.7 0.00054 1.8E-08 75.7 15.6 184 178-385 84-294 (357)
197 1l8q_A Chromosomal replication 97.6 0.00034 1.1E-08 76.5 13.6 154 204-380 37-202 (324)
198 2zan_A Vacuolar protein sortin 97.6 0.00094 3.2E-08 76.1 17.7 180 178-379 134-337 (444)
199 3b9p_A CG5977-PA, isoform A; A 97.6 0.0011 3.7E-08 71.4 17.4 181 178-384 21-231 (297)
200 3un9_A NLR family member X1; l 97.6 3E-06 1E-10 94.4 -3.1 82 555-637 71-166 (372)
201 4h09_A Hypothetical leucine ri 97.6 0.015 5.2E-07 64.9 26.6 145 913-1079 191-340 (379)
202 2gno_A DNA polymerase III, gam 97.5 0.00038 1.3E-08 74.5 11.5 147 182-352 1-152 (305)
203 3pxg_A Negative regulator of g 97.5 0.0004 1.4E-08 79.7 12.3 146 178-352 180-338 (468)
204 3cf0_A Transitional endoplasmi 97.5 0.00082 2.8E-08 72.3 13.6 179 178-380 15-222 (301)
205 2w58_A DNAI, primosome compone 97.5 8E-05 2.7E-09 75.2 5.3 118 186-321 37-158 (202)
206 3rw6_A Nuclear RNA export fact 97.5 5.2E-05 1.8E-09 79.0 3.7 79 553-632 167-257 (267)
207 3co5_A Putative two-component 97.5 0.00014 4.6E-09 68.6 6.2 111 178-321 4-115 (143)
208 1qvr_A CLPB protein; coiled co 97.4 0.00021 7.3E-09 88.8 9.2 153 178-351 170-344 (854)
209 3vfd_A Spastin; ATPase, microt 97.4 0.004 1.4E-07 69.7 18.7 185 178-385 115-325 (389)
210 4fcw_A Chaperone protein CLPB; 97.4 0.00084 2.9E-08 72.9 12.3 120 179-306 18-143 (311)
211 4b4t_J 26S protease regulatory 97.3 0.0031 1.1E-07 69.0 15.7 178 178-379 148-354 (405)
212 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0023 7.9E-08 78.8 16.1 155 178-352 186-362 (758)
213 1in4_A RUVB, holliday junction 97.3 0.0024 8.2E-08 69.8 14.3 176 178-384 25-221 (334)
214 3hu3_A Transitional endoplasmi 97.3 0.001 3.4E-08 76.3 11.6 177 178-378 204-406 (489)
215 2c9o_A RUVB-like 1; hexameric 97.3 0.0014 4.7E-08 75.1 12.8 97 284-385 297-409 (456)
216 2kjq_A DNAA-related protein; s 97.2 0.00015 5E-09 68.7 3.6 38 204-242 36-73 (149)
217 3un9_A NLR family member X1; l 97.2 4.9E-05 1.7E-09 84.6 -0.4 81 556-637 126-222 (372)
218 3pxi_A Negative regulator of g 97.2 0.0017 5.9E-08 79.7 13.3 147 178-352 180-338 (758)
219 1io0_A Tropomodulin; LRR prote 97.1 0.00012 4E-09 72.5 1.7 89 548-637 28-134 (185)
220 4b4t_K 26S protease regulatory 97.1 0.0038 1.3E-07 69.5 13.4 178 178-379 172-379 (428)
221 1lv7_A FTSH; alpha/beta domain 97.1 0.0083 2.8E-07 62.8 15.3 182 178-383 12-222 (257)
222 4b4t_L 26S protease subunit RP 97.0 0.0064 2.2E-07 67.7 14.8 178 178-379 181-387 (437)
223 1ofh_A ATP-dependent HSL prote 97.0 0.0025 8.5E-08 69.1 11.5 51 178-228 15-74 (310)
224 2ce7_A Cell division protein F 97.0 0.0066 2.3E-07 68.8 15.1 178 178-379 16-221 (476)
225 2bjv_A PSP operon transcriptio 97.0 0.0016 5.3E-08 68.8 9.2 47 179-228 7-53 (265)
226 3rw6_A Nuclear RNA export fact 97.0 0.00041 1.4E-08 72.1 4.3 82 576-659 167-260 (267)
227 3pxi_A Negative regulator of g 97.0 0.00094 3.2E-08 82.1 8.1 155 178-352 491-675 (758)
228 1ojl_A Transcriptional regulat 97.0 0.0018 6.1E-08 69.6 9.3 47 178-227 2-48 (304)
229 4b4t_H 26S protease regulatory 96.9 0.013 4.3E-07 65.2 15.4 177 179-379 210-415 (467)
230 4b4t_M 26S protease regulatory 96.9 0.0027 9.2E-08 70.7 9.7 176 178-378 181-386 (434)
231 4b4t_I 26S protease regulatory 96.8 0.0092 3.2E-07 65.5 13.5 177 178-379 182-388 (437)
232 2r62_A Cell division protease 96.8 0.0016 5.5E-08 68.8 7.0 156 178-352 11-196 (268)
233 1io0_A Tropomodulin; LRR prote 96.8 0.00047 1.6E-08 68.2 2.5 114 519-637 32-162 (185)
234 2r44_A Uncharacterized protein 96.6 0.0056 1.9E-07 66.9 10.4 151 179-353 28-199 (331)
235 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0048 1.6E-07 75.9 10.3 118 178-307 458-582 (758)
236 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0014 4.6E-08 69.2 4.5 69 204-293 123-193 (331)
237 3t15_A Ribulose bisphosphate c 96.5 0.026 8.8E-07 60.1 13.8 27 202-228 34-60 (293)
238 3cf2_A TER ATPase, transitiona 96.4 0.02 6.8E-07 68.9 13.4 177 179-379 205-407 (806)
239 2cvh_A DNA repair and recombin 96.3 0.016 5.3E-07 59.0 10.3 85 204-293 20-116 (220)
240 1qvr_A CLPB protein; coiled co 96.2 0.014 4.9E-07 72.4 11.4 134 179-321 559-710 (854)
241 3m6a_A ATP-dependent protease 96.2 0.012 4.1E-07 68.7 9.9 164 178-352 81-266 (543)
242 2x8a_A Nuclear valosin-contain 96.2 0.06 2.1E-06 56.5 14.4 153 179-352 11-191 (274)
243 2qgz_A Helicase loader, putati 96.0 0.0051 1.8E-07 66.0 5.5 55 184-241 134-189 (308)
244 2dhr_A FTSH; AAA+ protein, hex 96.0 0.15 5E-06 58.2 17.6 174 178-379 31-236 (499)
245 1ixz_A ATP-dependent metallopr 95.8 0.054 1.9E-06 56.3 12.0 156 178-352 16-199 (254)
246 1um8_A ATP-dependent CLP prote 95.8 0.043 1.5E-06 61.0 11.8 24 205-228 73-96 (376)
247 1iy2_A ATP-dependent metallopr 95.6 0.061 2.1E-06 56.8 11.8 178 178-379 40-245 (278)
248 1ypw_A Transitional endoplasmi 95.5 0.043 1.5E-06 67.2 11.3 156 178-352 204-385 (806)
249 3io5_A Recombination and repai 95.4 0.033 1.1E-06 58.4 8.4 84 205-293 29-122 (333)
250 3lw7_A Adenylate kinase relate 95.4 0.081 2.8E-06 51.2 11.1 20 205-224 2-21 (179)
251 1jr3_D DNA polymerase III, del 95.4 0.092 3.1E-06 57.4 12.5 157 204-385 18-184 (343)
252 3hr8_A Protein RECA; alpha and 95.4 0.031 1.1E-06 60.6 8.2 85 203-293 60-150 (356)
253 2b8t_A Thymidine kinase; deoxy 95.3 0.013 4.4E-07 59.0 4.6 113 204-323 12-127 (223)
254 1n0w_A DNA repair protein RAD5 95.3 0.032 1.1E-06 57.6 8.0 88 204-292 24-129 (243)
255 1v5w_A DMC1, meiotic recombina 95.2 0.06 2.1E-06 58.7 9.9 56 203-259 121-181 (343)
256 1xp8_A RECA protein, recombina 95.0 0.053 1.8E-06 59.3 8.7 83 204-292 74-162 (366)
257 2w0m_A SSO2452; RECA, SSPF, un 95.0 0.039 1.3E-06 56.5 7.4 114 205-322 24-168 (235)
258 2z43_A DNA repair and recombin 94.9 0.041 1.4E-06 59.5 7.6 55 204-259 107-166 (324)
259 1rz3_A Hypothetical protein rb 94.9 0.027 9.1E-07 56.2 5.6 44 182-227 2-45 (201)
260 2px0_A Flagellar biosynthesis 94.8 0.058 2E-06 57.2 8.3 86 204-291 105-191 (296)
261 3rfe_A Platelet glycoprotein I 94.7 0.039 1.3E-06 50.3 5.7 51 560-612 12-65 (130)
262 1g5t_A COB(I)alamin adenosyltr 94.6 0.063 2.1E-06 52.2 7.2 118 205-323 29-164 (196)
263 2zr9_A Protein RECA, recombina 94.5 0.078 2.7E-06 57.7 8.5 84 204-293 61-150 (349)
264 3ice_A Transcription terminati 94.5 0.033 1.1E-06 59.9 5.3 97 188-291 162-270 (422)
265 2pze_A Cystic fibrosis transme 94.5 0.36 1.2E-05 48.9 12.9 24 205-228 35-58 (229)
266 1odf_A YGR205W, hypothetical 3 94.5 0.17 5.7E-06 53.4 10.7 80 202-281 29-117 (290)
267 3tqc_A Pantothenate kinase; bi 94.4 0.13 4.4E-06 54.9 9.7 99 181-282 70-171 (321)
268 1gvn_B Zeta; postsegregational 94.3 0.037 1.3E-06 58.6 5.4 43 185-227 14-56 (287)
269 1sky_E F1-ATPase, F1-ATP synth 94.3 0.083 2.8E-06 58.9 8.3 87 205-291 152-254 (473)
270 1u94_A RECA protein, recombina 94.3 0.077 2.6E-06 57.8 7.9 83 204-292 63-151 (356)
271 2i1q_A DNA repair and recombin 94.2 0.065 2.2E-06 58.0 7.2 56 203-259 97-167 (322)
272 3c8u_A Fructokinase; YP_612366 94.2 0.032 1.1E-06 56.0 4.4 39 186-227 7-45 (208)
273 3rfe_A Platelet glycoprotein I 94.1 0.05 1.7E-06 49.6 5.1 53 1001-1060 12-66 (130)
274 2cbz_A Multidrug resistance-as 94.1 0.3 1E-05 49.8 11.5 24 205-228 32-55 (237)
275 1cr0_A DNA primase/helicase; R 94.1 0.099 3.4E-06 55.7 8.3 38 204-241 35-72 (296)
276 2p5t_B PEZT; postsegregational 93.7 0.045 1.5E-06 56.9 4.5 43 185-227 13-55 (253)
277 1pzn_A RAD51, DNA repair and r 93.7 0.18 6.1E-06 54.9 9.4 90 203-293 130-242 (349)
278 3nbx_X ATPase RAVA; AAA+ ATPas 93.7 0.047 1.6E-06 62.4 4.8 43 179-228 23-65 (500)
279 3dm5_A SRP54, signal recogniti 93.6 0.26 9E-06 54.8 10.7 26 203-228 99-124 (443)
280 2ck3_D ATP synthase subunit be 93.6 0.25 8.5E-06 55.0 10.3 65 189-257 142-207 (482)
281 1qhx_A CPT, protein (chloramph 93.6 0.031 1.1E-06 54.4 2.8 23 205-227 4-26 (178)
282 1zp6_A Hypothetical protein AT 93.5 0.042 1.4E-06 54.2 3.6 24 204-227 9-32 (191)
283 1fx0_B ATP synthase beta chain 93.4 0.17 5.7E-06 56.6 8.6 99 189-291 154-275 (498)
284 3kb2_A SPBC2 prophage-derived 93.4 0.034 1.2E-06 53.7 2.8 23 205-227 2-24 (173)
285 1uj2_A Uridine-cytidine kinase 93.4 0.24 8.1E-06 51.3 9.3 26 202-227 20-45 (252)
286 3e70_C DPA, signal recognition 93.3 0.36 1.2E-05 51.8 10.9 26 203-228 128-153 (328)
287 3vaa_A Shikimate kinase, SK; s 93.3 0.038 1.3E-06 55.0 3.0 24 204-227 25-48 (199)
288 1ly1_A Polynucleotide kinase; 93.1 0.043 1.5E-06 53.5 3.1 22 205-226 3-24 (181)
289 3hws_A ATP-dependent CLP prote 93.1 0.072 2.4E-06 58.8 5.2 50 179-228 16-75 (363)
290 1vma_A Cell division protein F 93.0 0.22 7.4E-06 52.9 8.5 88 203-292 103-196 (306)
291 3kl4_A SRP54, signal recogniti 93.0 0.21 7E-06 55.6 8.5 26 203-228 96-121 (433)
292 1kgd_A CASK, peripheral plasma 93.0 0.053 1.8E-06 52.9 3.4 24 204-227 5-28 (180)
293 3uie_A Adenylyl-sulfate kinase 92.9 0.058 2E-06 53.7 3.6 25 204-228 25-49 (200)
294 1kag_A SKI, shikimate kinase I 92.8 0.042 1.4E-06 53.2 2.5 23 205-227 5-27 (173)
295 3trf_A Shikimate kinase, SK; a 92.8 0.047 1.6E-06 53.5 2.9 24 204-227 5-28 (185)
296 2xxa_A Signal recognition part 92.8 0.37 1.3E-05 53.9 10.4 28 202-229 98-125 (433)
297 1ex7_A Guanylate kinase; subst 92.7 0.043 1.5E-06 53.4 2.3 23 205-227 2-24 (186)
298 3lda_A DNA repair protein RAD5 92.7 0.23 7.7E-06 55.0 8.4 56 204-260 178-238 (400)
299 3bh0_A DNAB-like replicative h 92.7 0.46 1.6E-05 50.9 10.7 51 204-257 68-118 (315)
300 3sr0_A Adenylate kinase; phosp 92.7 0.14 4.8E-06 50.9 6.1 74 206-292 2-84 (206)
301 2j37_W Signal recognition part 92.7 0.47 1.6E-05 54.0 11.1 27 202-228 99-125 (504)
302 2orw_A Thymidine kinase; TMTK, 92.6 0.013 4.3E-07 57.5 -1.7 23 205-227 4-26 (184)
303 3cf2_A TER ATPase, transitiona 92.6 0.31 1E-05 58.7 9.9 97 178-293 477-581 (806)
304 2rhm_A Putative kinase; P-loop 92.6 0.067 2.3E-06 52.8 3.6 24 204-227 5-28 (193)
305 3fwy_A Light-independent proto 92.5 0.064 2.2E-06 57.4 3.6 40 202-242 46-85 (314)
306 4gp7_A Metallophosphoesterase; 92.5 0.066 2.3E-06 51.6 3.3 23 204-226 9-31 (171)
307 1knq_A Gluconate kinase; ALFA/ 92.5 0.08 2.8E-06 51.3 4.0 24 204-227 8-31 (175)
308 4eun_A Thermoresistant glucoki 92.5 0.064 2.2E-06 53.4 3.3 24 204-227 29-52 (200)
309 2ga8_A Hypothetical 39.9 kDa p 92.4 0.12 4E-06 55.5 5.4 47 181-228 2-48 (359)
310 3t61_A Gluconokinase; PSI-biol 92.4 0.05 1.7E-06 54.3 2.5 24 204-227 18-41 (202)
311 1nks_A Adenylate kinase; therm 92.3 0.062 2.1E-06 53.0 3.0 24 205-228 2-25 (194)
312 2bbs_A Cystic fibrosis transme 92.3 0.71 2.4E-05 48.5 11.2 24 204-227 64-87 (290)
313 3tau_A Guanylate kinase, GMP k 92.3 0.071 2.4E-06 53.4 3.4 25 204-228 8-32 (208)
314 2bdt_A BH3686; alpha-beta prot 92.3 0.072 2.5E-06 52.4 3.4 22 205-226 3-24 (189)
315 1xjc_A MOBB protein homolog; s 92.2 0.074 2.5E-06 50.7 3.2 26 203-228 3-28 (169)
316 3iij_A Coilin-interacting nucl 92.2 0.056 1.9E-06 52.7 2.5 24 204-227 11-34 (180)
317 2ffh_A Protein (FFH); SRP54, s 92.2 0.26 8.9E-06 54.8 7.9 26 204-229 98-123 (425)
318 1zuh_A Shikimate kinase; alpha 92.1 0.066 2.3E-06 51.5 2.8 25 203-227 6-30 (168)
319 1kht_A Adenylate kinase; phosp 92.1 0.065 2.2E-06 52.8 2.8 24 205-228 4-27 (192)
320 3tr0_A Guanylate kinase, GMP k 92.1 0.07 2.4E-06 53.3 3.1 23 205-227 8-30 (205)
321 2qt1_A Nicotinamide riboside k 92.1 0.085 2.9E-06 52.8 3.7 25 203-227 20-44 (207)
322 2ze6_A Isopentenyl transferase 92.1 0.071 2.4E-06 55.2 3.1 23 205-227 2-24 (253)
323 1ye8_A Protein THEP1, hypothet 92.1 0.077 2.6E-06 51.5 3.2 23 206-228 2-24 (178)
324 3jvv_A Twitching mobility prot 92.0 0.061 2.1E-06 58.6 2.7 110 205-325 124-234 (356)
325 4a1f_A DNAB helicase, replicat 92.0 0.28 9.7E-06 52.6 7.8 52 204-258 46-97 (338)
326 1ukz_A Uridylate kinase; trans 92.0 0.089 3E-06 52.4 3.7 25 203-227 14-38 (203)
327 3a00_A Guanylate kinase, GMP k 92.0 0.062 2.1E-06 52.7 2.5 24 205-228 2-25 (186)
328 1y63_A LMAJ004144AAA protein; 92.0 0.077 2.6E-06 51.9 3.1 24 204-227 10-33 (184)
329 1via_A Shikimate kinase; struc 92.0 0.059 2E-06 52.2 2.3 23 205-227 5-27 (175)
330 3upu_A ATP-dependent DNA helic 92.0 0.21 7.3E-06 56.9 7.2 105 205-323 46-166 (459)
331 3umf_A Adenylate kinase; rossm 91.9 0.078 2.7E-06 53.0 3.1 26 202-227 27-52 (217)
332 1uf9_A TT1252 protein; P-loop, 91.9 0.082 2.8E-06 52.7 3.3 25 203-227 7-31 (203)
333 3asz_A Uridine kinase; cytidin 91.9 0.084 2.9E-06 53.0 3.4 25 203-227 5-29 (211)
334 2qor_A Guanylate kinase; phosp 91.9 0.064 2.2E-06 53.6 2.4 26 203-228 11-36 (204)
335 2jaq_A Deoxyguanosine kinase; 91.8 0.076 2.6E-06 53.0 2.9 22 206-227 2-23 (205)
336 2c95_A Adenylate kinase 1; tra 91.8 0.078 2.7E-06 52.5 3.0 24 204-227 9-32 (196)
337 1tev_A UMP-CMP kinase; ploop, 91.8 0.083 2.8E-06 52.2 3.1 24 204-227 3-26 (196)
338 3a4m_A L-seryl-tRNA(SEC) kinas 91.7 0.086 2.9E-06 54.9 3.3 24 204-227 4-27 (260)
339 2j41_A Guanylate kinase; GMP, 91.7 0.092 3.1E-06 52.5 3.4 24 204-227 6-29 (207)
340 1jjv_A Dephospho-COA kinase; P 91.7 0.095 3.3E-06 52.4 3.5 22 205-226 3-24 (206)
341 1lvg_A Guanylate kinase, GMP k 91.6 0.073 2.5E-06 52.8 2.5 23 205-227 5-27 (198)
342 2yvu_A Probable adenylyl-sulfa 91.6 0.097 3.3E-06 51.3 3.4 26 203-228 12-37 (186)
343 2iyv_A Shikimate kinase, SK; t 91.5 0.066 2.3E-06 52.4 2.0 23 205-227 3-25 (184)
344 2if2_A Dephospho-COA kinase; a 91.5 0.083 2.8E-06 52.7 2.8 22 205-226 2-23 (204)
345 2bbw_A Adenylate kinase 4, AK4 91.4 0.094 3.2E-06 54.1 3.2 24 204-227 27-50 (246)
346 1cke_A CK, MSSA, protein (cyti 91.4 0.093 3.2E-06 53.4 3.2 23 205-227 6-28 (227)
347 2cdn_A Adenylate kinase; phosp 91.4 0.1 3.6E-06 51.8 3.4 24 204-227 20-43 (201)
348 3ney_A 55 kDa erythrocyte memb 91.4 0.1 3.5E-06 51.2 3.2 25 203-227 18-42 (197)
349 1zu4_A FTSY; GTPase, signal re 91.4 0.72 2.5E-05 49.3 10.1 27 202-228 103-129 (320)
350 3cm0_A Adenylate kinase; ATP-b 91.3 0.099 3.4E-06 51.2 3.1 24 204-227 4-27 (186)
351 1nn5_A Similar to deoxythymidy 91.3 0.14 4.9E-06 51.4 4.4 32 204-235 9-40 (215)
352 1qf9_A UMP/CMP kinase, protein 91.2 0.12 4E-06 51.0 3.6 24 204-227 6-29 (194)
353 3aez_A Pantothenate kinase; tr 91.2 0.12 4E-06 55.3 3.7 25 203-227 89-113 (312)
354 1e6c_A Shikimate kinase; phosp 91.2 0.08 2.7E-06 51.1 2.3 23 205-227 3-25 (173)
355 1j8m_F SRP54, signal recogniti 91.2 0.37 1.3E-05 50.9 7.6 89 204-293 98-191 (297)
356 2plr_A DTMP kinase, probable t 91.2 0.11 3.7E-06 52.2 3.3 24 205-228 5-28 (213)
357 2bwj_A Adenylate kinase 5; pho 91.1 0.093 3.2E-06 52.1 2.7 23 205-227 13-35 (199)
358 1htw_A HI0065; nucleotide-bind 91.1 0.12 4.3E-06 48.7 3.4 24 204-227 33-56 (158)
359 2pt5_A Shikimate kinase, SK; a 90.9 0.11 3.7E-06 49.9 2.9 22 206-227 2-23 (168)
360 1znw_A Guanylate kinase, GMP k 90.9 0.11 3.8E-06 51.9 3.1 24 204-227 20-43 (207)
361 2jeo_A Uridine-cytidine kinase 90.8 0.13 4.6E-06 52.9 3.7 24 204-227 25-48 (245)
362 2vli_A Antibiotic resistance p 90.8 0.076 2.6E-06 51.9 1.7 24 204-227 5-28 (183)
363 2grj_A Dephospho-COA kinase; T 90.8 0.14 4.6E-06 50.3 3.5 25 203-227 11-35 (192)
364 1rj9_A FTSY, signal recognitio 90.8 0.13 4.4E-06 54.7 3.5 26 203-228 101-126 (304)
365 1g8p_A Magnesium-chelatase 38 90.7 0.11 3.8E-06 57.0 3.1 46 178-228 24-69 (350)
366 2q6t_A DNAB replication FORK h 90.7 0.46 1.6E-05 53.8 8.3 52 204-257 200-251 (444)
367 2pez_A Bifunctional 3'-phospho 90.7 0.13 4.5E-06 50.0 3.3 24 204-227 5-28 (179)
368 1aky_A Adenylate kinase; ATP:A 90.7 0.12 4E-06 52.4 3.0 24 204-227 4-27 (220)
369 4e22_A Cytidylate kinase; P-lo 90.6 0.13 4.4E-06 53.3 3.3 24 204-227 27-50 (252)
370 1z6g_A Guanylate kinase; struc 90.6 0.1 3.5E-06 52.6 2.5 23 205-227 24-46 (218)
371 1zak_A Adenylate kinase; ATP:A 90.6 0.099 3.4E-06 53.0 2.4 24 204-227 5-28 (222)
372 1ls1_A Signal recognition part 90.6 0.36 1.2E-05 51.1 6.8 25 204-228 98-122 (295)
373 2pbr_A DTMP kinase, thymidylat 90.5 0.12 4.1E-06 51.0 2.9 23 206-228 2-24 (195)
374 2r6a_A DNAB helicase, replicat 90.5 0.5 1.7E-05 53.7 8.4 50 204-255 203-252 (454)
375 3e1s_A Exodeoxyribonuclease V, 90.4 0.26 9E-06 57.5 6.0 103 205-319 205-313 (574)
376 1zd8_A GTP:AMP phosphotransfer 90.4 0.12 4E-06 52.6 2.7 24 204-227 7-30 (227)
377 1g41_A Heat shock protein HSLU 90.4 0.2 6.7E-06 55.9 4.7 51 178-228 15-74 (444)
378 1s96_A Guanylate kinase, GMP k 90.3 0.14 4.7E-06 51.6 3.1 25 204-228 16-40 (219)
379 4a74_A DNA repair and recombin 90.3 0.3 1E-05 49.6 5.8 41 204-244 25-70 (231)
380 3vkw_A Replicase large subunit 90.3 0.72 2.5E-05 51.1 9.0 27 200-226 157-183 (446)
381 2wwf_A Thymidilate kinase, put 90.2 0.13 4.4E-06 51.6 2.9 32 204-235 10-41 (212)
382 2f6r_A COA synthase, bifunctio 90.2 0.16 5.5E-06 53.5 3.7 23 203-225 74-96 (281)
383 3l0o_A Transcription terminati 90.1 0.47 1.6E-05 51.0 7.0 54 187-244 162-216 (427)
384 1tue_A Replication protein E1; 90.1 0.19 6.6E-06 49.0 3.7 38 187-228 45-82 (212)
385 3dl0_A Adenylate kinase; phosp 89.9 0.13 4.6E-06 51.7 2.7 22 206-227 2-23 (216)
386 1m7g_A Adenylylsulfate kinase; 89.9 0.17 5.7E-06 50.8 3.4 25 204-228 25-49 (211)
387 2z0h_A DTMP kinase, thymidylat 89.9 0.15 5E-06 50.5 2.9 23 206-228 2-24 (197)
388 2zts_A Putative uncharacterize 89.9 0.32 1.1E-05 50.1 5.7 50 204-255 30-79 (251)
389 2yhs_A FTSY, cell division pro 89.9 0.58 2E-05 52.6 7.9 42 203-246 292-333 (503)
390 2v54_A DTMP kinase, thymidylat 89.8 0.16 5.4E-06 50.6 3.2 25 204-228 4-28 (204)
391 1q57_A DNA primase/helicase; d 89.8 0.79 2.7E-05 52.9 9.4 53 204-258 242-294 (503)
392 2f1r_A Molybdopterin-guanine d 89.8 0.1 3.5E-06 50.1 1.5 24 205-228 3-26 (171)
393 2hf9_A Probable hydrogenase ni 89.7 0.24 8.3E-06 50.2 4.5 25 203-227 37-61 (226)
394 3fb4_A Adenylate kinase; psych 89.7 0.15 5E-06 51.4 2.8 22 206-227 2-23 (216)
395 1gtv_A TMK, thymidylate kinase 89.7 0.085 2.9E-06 53.1 1.0 23 206-228 2-24 (214)
396 2i3b_A HCR-ntpase, human cance 89.7 0.14 4.9E-06 50.0 2.6 23 206-228 3-25 (189)
397 1vht_A Dephospho-COA kinase; s 89.6 0.2 6.7E-06 50.5 3.7 23 204-226 4-26 (218)
398 3nwj_A ATSK2; P loop, shikimat 89.6 0.13 4.5E-06 52.8 2.3 23 205-227 49-71 (250)
399 2onk_A Molybdate/tungstate ABC 89.5 0.18 6E-06 51.6 3.2 23 205-227 25-47 (240)
400 2c61_A A-type ATP synthase non 89.5 0.29 1E-05 54.5 5.1 87 205-291 153-258 (469)
401 3tlx_A Adenylate kinase 2; str 89.5 0.19 6.4E-06 51.7 3.4 25 203-227 28-52 (243)
402 3b9q_A Chloroplast SRP recepto 89.4 0.2 6.7E-06 53.2 3.6 24 204-227 100-123 (302)
403 3a8t_A Adenylate isopentenyltr 89.4 0.22 7.4E-06 53.1 3.8 24 204-227 40-63 (339)
404 3tif_A Uncharacterized ABC tra 89.3 0.18 6.3E-06 51.3 3.2 23 205-227 32-54 (235)
405 3d3q_A TRNA delta(2)-isopenten 89.3 0.18 6.1E-06 53.9 3.1 23 205-227 8-30 (340)
406 2pcj_A ABC transporter, lipopr 89.3 0.18 6.2E-06 51.0 3.0 23 205-227 31-53 (224)
407 3lv8_A DTMP kinase, thymidylat 89.2 0.36 1.2E-05 49.0 5.1 36 204-239 27-62 (236)
408 3be4_A Adenylate kinase; malar 89.2 0.15 5E-06 51.5 2.3 23 205-227 6-28 (217)
409 1np6_A Molybdopterin-guanine d 89.1 0.21 7.3E-06 48.0 3.3 25 203-227 5-29 (174)
410 2ehv_A Hypothetical protein PH 89.1 0.19 6.5E-06 51.9 3.2 23 204-226 30-52 (251)
411 3lnc_A Guanylate kinase, GMP k 89.0 0.13 4.6E-06 52.3 1.9 21 205-225 28-48 (231)
412 2r9v_A ATP synthase subunit al 89.0 0.55 1.9E-05 52.6 6.8 96 189-291 164-276 (515)
413 3r20_A Cytidylate kinase; stru 88.9 0.21 7.1E-06 50.5 3.2 24 204-227 9-32 (233)
414 3b5x_A Lipid A export ATP-bind 88.9 1.6 5.6E-05 51.2 11.4 24 204-227 369-392 (582)
415 1sq5_A Pantothenate kinase; P- 88.9 0.22 7.5E-06 53.3 3.5 25 203-227 79-103 (308)
416 2wsm_A Hydrogenase expression/ 88.9 0.3 1E-05 49.2 4.5 41 182-227 13-53 (221)
417 2qe7_A ATP synthase subunit al 88.8 0.68 2.3E-05 51.8 7.4 96 189-291 151-263 (502)
418 3exa_A TRNA delta(2)-isopenten 88.8 0.22 7.6E-06 52.2 3.3 24 204-227 3-26 (322)
419 1yrb_A ATP(GTP)binding protein 88.8 0.3 1E-05 50.9 4.5 26 202-227 12-37 (262)
420 4tmk_A Protein (thymidylate ki 88.7 0.4 1.4E-05 47.8 5.1 52 205-256 4-55 (213)
421 3ake_A Cytidylate kinase; CMP 88.7 0.2 6.9E-06 50.0 2.9 22 206-227 4-25 (208)
422 3ld9_A DTMP kinase, thymidylat 88.7 0.45 1.5E-05 47.7 5.4 34 203-236 20-54 (223)
423 3gfo_A Cobalt import ATP-bindi 88.7 0.21 7.3E-06 52.1 3.2 22 205-226 35-56 (275)
424 3cmu_A Protein RECA, recombina 88.6 0.63 2.2E-05 61.4 8.0 84 203-292 1426-1515(2050)
425 1b0u_A Histidine permease; ABC 88.5 0.22 7.6E-06 51.7 3.2 23 205-227 33-55 (262)
426 3b85_A Phosphate starvation-in 88.5 0.17 5.7E-06 50.4 2.1 23 205-227 23-45 (208)
427 3vr4_D V-type sodium ATPase su 88.5 0.4 1.4E-05 53.0 5.2 86 205-291 152-257 (465)
428 1sgw_A Putative ABC transporte 88.4 0.2 6.7E-06 50.1 2.6 23 205-227 36-58 (214)
429 1ji0_A ABC transporter; ATP bi 88.4 0.23 8E-06 50.8 3.2 23 205-227 33-55 (240)
430 3crm_A TRNA delta(2)-isopenten 88.4 0.23 7.8E-06 52.8 3.1 23 205-227 6-28 (323)
431 2xb4_A Adenylate kinase; ATP-b 88.4 0.22 7.4E-06 50.4 2.9 22 206-227 2-23 (223)
432 3p32_A Probable GTPase RV1496/ 88.3 0.45 1.5E-05 52.0 5.7 39 186-227 64-102 (355)
433 4g1u_C Hemin import ATP-bindin 88.3 0.23 8E-06 51.5 3.2 23 205-227 38-60 (266)
434 2olj_A Amino acid ABC transpor 88.3 0.24 8.1E-06 51.4 3.2 23 205-227 51-73 (263)
435 1ak2_A Adenylate kinase isoenz 88.3 0.23 8E-06 50.6 3.2 24 204-227 16-39 (233)
436 1g6h_A High-affinity branched- 88.2 0.24 8.2E-06 51.3 3.2 23 205-227 34-56 (257)
437 1mv5_A LMRA, multidrug resista 88.2 0.26 8.8E-06 50.6 3.4 24 204-227 28-51 (243)
438 2r8r_A Sensor protein; KDPD, P 88.1 0.3 1E-05 48.6 3.6 105 205-322 7-127 (228)
439 1e4v_A Adenylate kinase; trans 88.1 0.22 7.6E-06 50.0 2.8 22 206-227 2-23 (214)
440 2og2_A Putative signal recogni 88.1 0.27 9.2E-06 53.3 3.6 26 203-228 156-181 (359)
441 3llm_A ATP-dependent RNA helic 88.1 1.3 4.4E-05 45.0 8.6 89 205-294 77-188 (235)
442 2ff7_A Alpha-hemolysin translo 88.1 0.25 8.6E-06 50.7 3.2 23 205-227 36-58 (247)
443 1vpl_A ABC transporter, ATP-bi 88.0 0.25 8.7E-06 50.9 3.2 23 205-227 42-64 (256)
444 2d2e_A SUFC protein; ABC-ATPas 88.0 0.25 8.7E-06 50.8 3.2 23 205-227 30-52 (250)
445 3k1j_A LON protease, ATP-depen 88.0 0.37 1.3E-05 57.0 5.0 44 178-228 41-84 (604)
446 3gqb_B V-type ATP synthase bet 87.9 0.43 1.5E-05 52.7 5.0 87 205-291 148-260 (464)
447 3foz_A TRNA delta(2)-isopenten 87.9 0.3 1E-05 51.2 3.6 25 203-227 9-33 (316)
448 3end_A Light-independent proto 87.8 0.28 9.6E-06 52.5 3.6 41 202-243 39-79 (307)
449 2wji_A Ferrous iron transport 87.8 0.33 1.1E-05 46.3 3.7 23 205-227 4-26 (165)
450 2ghi_A Transport protein; mult 87.7 0.27 9.2E-06 51.0 3.2 23 205-227 47-69 (260)
451 2qi9_C Vitamin B12 import ATP- 87.7 0.27 9.3E-06 50.5 3.2 23 205-227 27-49 (249)
452 2zu0_C Probable ATP-dependent 87.7 0.27 9.1E-06 51.2 3.2 23 205-227 47-69 (267)
453 3mfy_A V-type ATP synthase alp 87.7 0.91 3.1E-05 51.2 7.5 59 189-254 216-275 (588)
454 2ixe_A Antigen peptide transpo 87.7 0.27 9.3E-06 51.3 3.2 24 204-227 45-68 (271)
455 3bgw_A DNAB-like replicative h 87.7 1.7 5.7E-05 48.9 9.9 51 204-257 197-247 (444)
456 3zvl_A Bifunctional polynucleo 87.6 0.29 9.9E-06 54.8 3.6 26 202-227 256-281 (416)
457 1q3t_A Cytidylate kinase; nucl 87.6 0.3 1E-05 49.9 3.4 26 202-227 14-39 (236)
458 2zej_A Dardarin, leucine-rich 87.6 0.27 9.3E-06 47.9 3.0 22 206-227 4-25 (184)
459 2vp4_A Deoxynucleoside kinase; 87.4 0.3 1E-05 49.7 3.3 25 203-227 19-43 (230)
460 1pgv_A TMD-1, tropomodulin TMD 87.4 0.37 1.3E-05 47.1 3.7 88 548-636 33-136 (197)
461 2nq2_C Hypothetical ABC transp 87.4 0.28 9.7E-06 50.5 3.1 23 205-227 32-54 (253)
462 2yz2_A Putative ABC transporte 87.4 0.29 9.9E-06 50.9 3.2 23 205-227 34-56 (266)
463 1oix_A RAS-related protein RAB 87.4 0.29 9.8E-06 48.1 3.0 25 204-228 29-53 (191)
464 2ihy_A ABC transporter, ATP-bi 87.4 0.29 9.8E-06 51.3 3.2 23 205-227 48-70 (279)
465 2eyu_A Twitching motility prot 87.3 0.32 1.1E-05 50.4 3.4 107 204-325 25-136 (261)
466 1a7j_A Phosphoribulokinase; tr 87.2 0.15 5.3E-06 53.8 1.0 25 203-227 4-28 (290)
467 2dyk_A GTP-binding protein; GT 87.2 0.32 1.1E-05 45.9 3.2 24 205-228 2-25 (161)
468 1ltq_A Polynucleotide kinase; 87.1 0.29 9.9E-06 52.2 3.1 22 205-226 3-24 (301)
469 2v9p_A Replication protein E1; 87.0 0.31 1.1E-05 51.4 3.2 24 204-227 126-149 (305)
470 4edh_A DTMP kinase, thymidylat 86.9 0.66 2.2E-05 46.3 5.4 32 204-235 6-37 (213)
471 3vr4_A V-type sodium ATPase ca 86.9 1.1 3.8E-05 50.8 7.6 59 189-254 221-280 (600)
472 2qmh_A HPR kinase/phosphorylas 86.8 0.34 1.2E-05 47.0 3.0 24 205-228 35-58 (205)
473 4eaq_A DTMP kinase, thymidylat 86.6 0.38 1.3E-05 48.8 3.5 27 203-229 25-51 (229)
474 1svm_A Large T antigen; AAA+ f 86.4 0.36 1.2E-05 52.8 3.4 24 204-227 169-192 (377)
475 2f9l_A RAB11B, member RAS onco 86.4 0.36 1.2E-05 47.7 3.2 24 204-227 5-28 (199)
476 2v3c_C SRP54, signal recogniti 86.4 0.38 1.3E-05 53.8 3.6 26 203-228 98-123 (432)
477 3hjn_A DTMP kinase, thymidylat 86.3 0.96 3.3E-05 44.4 6.2 26 206-231 2-27 (197)
478 4a82_A Cystic fibrosis transme 86.2 1.3 4.4E-05 52.0 8.2 24 204-227 367-390 (578)
479 2wjg_A FEOB, ferrous iron tran 86.1 0.44 1.5E-05 46.4 3.7 24 204-227 7-30 (188)
480 2pjz_A Hypothetical protein ST 86.1 0.37 1.3E-05 49.9 3.2 23 205-227 31-53 (263)
481 2fz4_A DNA repair protein RAD2 86.1 2.8 9.7E-05 42.5 9.8 103 207-319 111-226 (237)
482 2ocp_A DGK, deoxyguanosine kin 86.0 0.37 1.3E-05 49.3 3.2 25 204-228 2-26 (241)
483 1fx0_A ATP synthase alpha chai 86.0 0.64 2.2E-05 52.1 5.1 84 205-291 164-264 (507)
484 1nlf_A Regulatory protein REPA 85.9 0.34 1.2E-05 50.9 2.8 23 204-226 30-52 (279)
485 3oaa_A ATP synthase subunit al 85.9 1 3.4E-05 50.3 6.5 96 189-291 151-263 (513)
486 3cmu_A Protein RECA, recombina 85.8 1.1 3.6E-05 59.3 7.8 86 203-294 382-473 (2050)
487 3nh6_A ATP-binding cassette SU 85.8 0.31 1.1E-05 51.6 2.4 24 204-227 80-103 (306)
488 3sop_A Neuronal-specific septi 85.8 0.37 1.3E-05 50.2 3.0 22 206-227 4-25 (270)
489 1cp2_A CP2, nitrogenase iron p 85.6 0.4 1.4E-05 50.1 3.2 37 205-242 2-38 (269)
490 2ce2_X GTPase HRAS; signaling 85.4 0.37 1.3E-05 45.6 2.6 22 206-227 5-26 (166)
491 1u0j_A DNA replication protein 85.4 0.77 2.6E-05 47.1 5.0 37 188-227 91-127 (267)
492 2nzj_A GTP-binding protein REM 85.4 0.43 1.5E-05 45.8 3.1 25 204-228 4-28 (175)
493 2afh_E Nitrogenase iron protei 85.3 0.45 1.5E-05 50.4 3.4 39 204-243 2-40 (289)
494 2ck3_A ATP synthase subunit al 85.2 0.96 3.3E-05 50.7 6.0 99 189-291 151-271 (510)
495 1p5z_B DCK, deoxycytidine kina 85.2 0.35 1.2E-05 50.4 2.4 25 203-227 23-47 (263)
496 3fdi_A Uncharacterized protein 85.1 0.43 1.5E-05 47.2 2.9 25 205-229 7-31 (201)
497 1z2a_A RAS-related protein RAB 85.1 0.5 1.7E-05 44.9 3.4 24 204-227 5-28 (168)
498 2lkc_A Translation initiation 85.0 0.56 1.9E-05 45.1 3.7 25 203-227 7-31 (178)
499 3f9v_A Minichromosome maintena 85.0 0.36 1.2E-05 56.7 2.7 51 178-228 295-351 (595)
500 2gj8_A MNME, tRNA modification 84.9 0.45 1.5E-05 45.7 2.9 23 205-227 5-27 (172)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=7.7e-41 Score=397.33 Aligned_cols=290 Identities=16% Similarity=0.235 Sum_probs=231.0
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhc--ccccc-ccCcEEEEEecCcc--ChHHHH
Q 043647 177 EPAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFD--DKAVE-MFNLRSWVCVSDDF--DILRIT 251 (1096)
Q Consensus 177 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~-~f~~~~wv~~~~~~--~~~~~~ 251 (1096)
.+..|||++++++|.++|.... +...++|+|+||||+||||||+++|+ +.+++ +|+.++||++++.+ ++..++
T Consensus 127 ~~~~~GR~~~~~~l~~~L~~~~--~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 204 (549)
T 2a5y_B 127 QMTCYIREYHVDRVIKKLDEMC--DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLF 204 (549)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT--TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHH
T ss_pred CCccCCchHHHHHHHHHHhccc--CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHH
Confidence 3343699999999999997542 23579999999999999999999998 56666 99999999999885 899999
Q ss_pred HHHHHhccCCCC-------CCCcHHHHHHHHHHHhCCC-cEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchh
Q 043647 252 KSILESITFSPN-------SLKDLNQIQVQLREAVAGK-RFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTD 323 (1096)
Q Consensus 252 ~~i~~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 323 (1096)
..|+.+++.... +..+.+.+...+++.++++ ||||||||||+.+...|... +||+||||||++.
T Consensus 205 ~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~--------~gs~ilvTTR~~~ 276 (549)
T 2a5y_B 205 TDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE--------LRLRCLVTTRDVE 276 (549)
T ss_dssp HHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH--------TTCEEEEEESBGG
T ss_pred HHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhccccc--------CCCEEEEEcCCHH
Confidence 999999986522 2234567789999999996 99999999998632234321 6999999999999
Q ss_pred hhhhcC-CcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHHHHhccCCCHHHHHHHH
Q 043647 324 VALTVG-TAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGGLLRCKQSDDEWDEIL 402 (1096)
Q Consensus 324 v~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~ 402 (1096)
++..++ ....|++++|+.++||+||.+++|+.. .++.+.+++++|+++|+|+||||+++|+.++.+ .. +|...+
T Consensus 277 v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l 351 (549)
T 2a5y_B 277 ISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQL 351 (549)
T ss_dssp GGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHH
T ss_pred HHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHh
Confidence 998876 346799999999999999999997643 246788899999999999999999999999766 32 333444
Q ss_pred hhhccccccCCChHHHHHHHHhcCchhhHHHhh-----------hhcccCCCcccc----ccc-----------------
Q 043647 403 NSKIWYLSEESNILPVLRLSYHHLPSHLKRCFA-----------YCAIFPKDYEFE----EME----------------- 450 (1096)
Q Consensus 403 ~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~-----------~~a~fp~~~~~~----~~e----------------- 450 (1096)
.+..+... ...+..++.+||++||+++|.||+ |||+||+++.|+ ..+
T Consensus 352 ~~~l~~~~-~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~~~~~~~~~ 430 (549)
T 2a5y_B 352 NNKLESRG-LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEV 430 (549)
T ss_dssp HHHHHHHC-SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC-------CCCTHHH
T ss_pred HHHhhccc-HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCCCCCCHHHH
Confidence 44333222 356888999999999999999999 999999998876 112
Q ss_pred ----------cccccCC-CCcceEEehhHHHHHHHHhhcccee
Q 043647 451 ----------SIFQPSS-NNSFKFIMHDLVNDLAQWISGETSF 482 (1096)
Q Consensus 451 ----------~~~~~~~-~~~~~~~mhdlv~d~~~~~~~~~~~ 482 (1096)
++++... +...+|+|||+||++|++++.+++.
T Consensus 431 ~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 431 ADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 3444332 2456799999999999999987664
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-34 Score=360.70 Aligned_cols=259 Identities=14% Similarity=0.098 Sum_probs=152.7
Q ss_pred ccccccccEEEEecCCCcCccCCC---CCCCccEEEEecccC---ccccCCCCCCcceEEeccCCCccccCCCCcccccC
Q 043647 812 VERFACLRQLSIVKCPRLCGRLPN---HLPILEKLMIYECVQ---LVVSFSSLPLLCKLEIDRCKGVACRSPADLMSINS 885 (1096)
Q Consensus 812 ~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~---l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 885 (1096)
...+++|+.|++++|. +.+.+|. .+++|+.|++.+|.. +...+..+++|+.|++++|.... ...
T Consensus 414 l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~---------~~p 483 (768)
T 3rgz_A 414 LSNCSELVSLHLSFNY-LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG---------EIP 483 (768)
T ss_dssp GGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS---------CCC
T ss_pred HhcCCCCCEEECcCCc-ccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC---------cCC
Confidence 3445556666665542 2223332 345555565555432 22234445566666666654321 112
Q ss_pred CCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCCCCcccCCCC-----
Q 043647 886 DSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCPSLVSFPEGG----- 960 (1096)
Q Consensus 886 ~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~----- 960 (1096)
..+..+++|++|++++|.....+|..+..+++|++|++++|.....+|..+..+++|+.|++++|+....+|...
T Consensus 484 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~ 563 (768)
T 3rgz_A 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTT
T ss_pred HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccc
Confidence 234555666666666666544566666666666666666665555566666666666666666654333333210
Q ss_pred ------------------------------------------------------------------CCCCcCeEEEccCc
Q 043647 961 ------------------------------------------------------------------LPNCSLSVTIGKCE 974 (1096)
Q Consensus 961 ------------------------------------------------------------------~~~~L~~L~l~~c~ 974 (1096)
-.++|+.|+++++.
T Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~ 643 (768)
T 3rgz_A 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643 (768)
T ss_dssp CBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC
T ss_pred hhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCc
Confidence 01345555555543
Q ss_pred CCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCc-ccCcCCCCCCCCcCe
Q 043647 975 KLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLK-YLSSNGFRNLAFLEY 1053 (1096)
Q Consensus 975 ~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~-~l~~~~l~~l~~L~~ 1053 (1096)
--..+| ..++++++|+.|++++|.-.+.+|..+ ..+++|+.|++++|. ++ .+| ..+.++++|++
T Consensus 644 l~g~ip----------~~l~~l~~L~~L~Ls~N~l~g~ip~~l---~~L~~L~~LdLs~N~-l~g~ip-~~l~~l~~L~~ 708 (768)
T 3rgz_A 644 LSGYIP----------KEIGSMPYLFILNLGHNDISGSIPDEV---GDLRGLNILDLSSNK-LDGRIP-QAMSALTMLTE 708 (768)
T ss_dssp CBSCCC----------GGGGGCTTCCEEECCSSCCCSCCCGGG---GGCTTCCEEECCSSC-CEECCC-GGGGGCCCCSE
T ss_pred ccccCC----------HHHhccccCCEEeCcCCccCCCCChHH---hCCCCCCEEECCCCc-ccCcCC-hHHhCCCCCCE
Confidence 322333 467788888888888885445777754 677888888888844 55 566 67788888888
Q ss_pred EeeccCCCCCCCCCCCccccccceeeccCcchh----hhhcccCCC
Q 043647 1054 LQIRDCPKLTSFPEAGLPSSLLELYINDYPLMT----KQCKRDKGA 1095 (1096)
Q Consensus 1054 L~l~~c~~l~~l~~~~l~~~L~~L~i~~c~~L~----~~~~~~~~~ 1095 (1096)
|++++|+--..+|..+.+.++..+.+.+||.|. ..|...+|+
T Consensus 709 L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~ 754 (768)
T 3rgz_A 709 IDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNAD 754 (768)
T ss_dssp EECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--
T ss_pred EECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccC
Confidence 888886655667777767777777777877653 257666554
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7e-32 Score=333.54 Aligned_cols=547 Identities=15% Similarity=0.084 Sum_probs=324.2
Q ss_pred cCCcceeeeeeecccCCcccccccccCcCceeecccchhhhhhhhccchhhhhhhhcCCCCcceEEEecccccccCCC-C
Q 043647 496 RFRRARHSSYTCGFYDGKSKFEVFHEVEHLRTFLPVLSYEIRLLTRYITDVVLSNLLPKFTKLRVLSLKKYYITELPH-S 574 (1096)
Q Consensus 496 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~lp~-~ 574 (1096)
.+...+++.+........ ....+..+++|+.+.... +......+..|.++++|++|++++|.++.+|. .
T Consensus 23 ~~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~---------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~ 92 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGF---------NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKT 92 (680)
T ss_dssp SCTTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCS---------SCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTT
T ss_pred cCCCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCC---------CccCccCHHHHhcccCcCEEECCCCccCccChhh
Confidence 345677777765543322 123466777888776654 11223445667788889999999888888875 5
Q ss_pred cCCCCccceeecccccccccc-cccccCCCCcEEeccCcccCcccCccccCCCCCceEEeccccccccCccc-C--CCCC
Q 043647 575 IGDLKHLRYINLSETMIRCLP-ESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLVVTYVDLIREMPLG-I--KELK 650 (1096)
Q Consensus 575 i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-i--~~L~ 650 (1096)
|+++.+|++|++++|.+..+| ..++++++|++|++++|......|..++++++|++|++++|. +..++.. + ..++
T Consensus 93 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~ 171 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANS 171 (680)
T ss_dssp TTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTC
T ss_pred hccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccc
Confidence 888899999999998888876 578888999999998874444455667888899999998887 4555432 2 3456
Q ss_pred CCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCCeEEEeeeCCCCC-CcccC
Q 043647 651 CLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKELTVKCYGGTVF-PSWMG 729 (1096)
Q Consensus 651 ~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~ 729 (1096)
+|+.|+...... .......+..+..+. .+.+. ..... ..........+ ..++|+.|+++++..... |.++.
T Consensus 172 ~L~~L~L~~n~l-~~~~~~~~~~l~~L~-~L~l~---~~~l~--~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 172 SLKKLELSSNQI-KEFSPGCFHAIGRLF-GLFLN---NVQLG--PSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp EESEEECTTCCC-CCBCTTGGGGSSEEC-EEECT---TCCCH--HHHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTTG
T ss_pred cccEEECCCCcc-cccChhhhhhhhhhh-hhhcc---ccccC--hhhHHHHHHHh-hhccccEEEccCCcccccChhHhh
Confidence 677664322111 111111122222222 12111 11111 00011111111 246788888877765543 34444
Q ss_pred CccccceeEEeecCCCCCCCCC-CCCCcCCcceeecccccceeEecccccCCCCCCCCCCCceecccCCCcCcccccCcc
Q 043647 730 DPLFSNIVLLRLEDCEKCTSLP-SLGLLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQALETLCFEDLPEWEHWNSFKE 808 (1096)
Q Consensus 730 ~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 808 (1096)
....++|+.|++++|......| .++.+++|+.|+++++. +..+... .+..+++|+.|.+.+...-..+.....
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-----~~~~l~~L~~L~L~~~~~~~~~~~~~l 317 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSH-----SLHGLFNVRYLNLKRSFTKQSISLASL 317 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC-BSEECTT-----TTTTCTTCCEEECTTCBCCC------C
T ss_pred ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc-cCccChh-----hhcCCCCccEEeccchhhhcccccccc
Confidence 3112448888888875444333 57778888888887753 3333221 123366777776654211100000000
Q ss_pred ----CCcccccccccEEEEecCCCcCccCC---CCCCCccEEEEeccc----------------------------Cc--
Q 043647 809 ----NDHVERFACLRQLSIVKCPRLCGRLP---NHLPILEKLMIYECV----------------------------QL-- 851 (1096)
Q Consensus 809 ----~~~~~~~~~L~~L~l~~c~~l~~~~p---~~l~~L~~L~l~~~~----------------------------~l-- 851 (1096)
...+..+++|+.|++++|. +.+..| ..+++|+.|++.+|. ..
T Consensus 318 p~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~ 396 (680)
T 1ziw_A 318 PKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCC-BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEE
T ss_pred cccChhhcccCCCCCEEECCCCc-cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeE
Confidence 0013445666666666543 221222 234555555555442 11
Q ss_pred -cccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCC--
Q 043647 852 -VVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCEN-- 928 (1096)
Q Consensus 852 -~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~-- 928 (1096)
...+..+++|+.|++++|.... .+....+..+++|++|++++|......+..+..+++|+.|++++|..
T Consensus 397 ~~~~~~~l~~L~~L~L~~N~l~~--------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 468 (680)
T 1ziw_A 397 ESDAFSWLGHLEVLDLGLNEIGQ--------ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCEE--------ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBC
T ss_pred ChhhhhCCCCCCEEeCCCCcCcc--------ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccc
Confidence 1123344555555555543221 11223445566677777777653333345566677777777776542
Q ss_pred cCcCCCCCCCCCCcCeEEEeCCCCCcccCCCCC--CCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcC
Q 043647 929 LKSLPEGLPNLNSLHNIYVWDCPSLVSFPEGGL--PNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIG 1006 (1096)
Q Consensus 929 l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~ 1006 (1096)
+..+|..+.++++|+.|++++| .++.++...+ .++|+.|+++++. ++.++. ..++......+.++++|++|++++
T Consensus 469 ~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~~~~~~~~~l~~L~~L~L~~ 545 (680)
T 1ziw_A 469 VDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNN-LARLWK-HANPGGPIYFLKGLSHLHILNLES 545 (680)
T ss_dssp TTCSSCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CGGGGS-TTSTTSCCCTTTTCTTCCEEECCS
T ss_pred cccCCcccccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCC-ccccch-hhccCCcchhhcCCCCCCEEECCC
Confidence 2456777888888888888884 4666665433 3778888888753 443321 001111112478899999999999
Q ss_pred CCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCCCCCc---cccccceeeccCc
Q 043647 1007 CPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFPEAGL---PSSLLELYINDYP 1083 (1096)
Q Consensus 1007 c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~l---~~~L~~L~i~~c~ 1083 (1096)
| .+..+|... |..+++|+.|++++ ++++.+|...|.++++|+.|++++ +.++.++...+ .++|+.|++++||
T Consensus 546 N-~l~~i~~~~--~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 546 N-GFDEIPVEV--FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQK-NLITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp S-CCCCCCTTT--TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTT-SCCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred C-CCCCCCHHH--cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCC-CcCCccChhHhcccccccCEEEccCCC
Confidence 9 788888642 46789999999988 679999877788999999999999 68888887543 4689999999876
Q ss_pred c
Q 043647 1084 L 1084 (1096)
Q Consensus 1084 ~ 1084 (1096)
-
T Consensus 621 ~ 621 (680)
T 1ziw_A 621 F 621 (680)
T ss_dssp C
T ss_pred c
Confidence 3
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.9e-34 Score=357.39 Aligned_cols=498 Identities=16% Similarity=0.102 Sum_probs=288.0
Q ss_pred hcCCCCcceEEEeccccccc-CCCCc-CCCCccceeecccccccccc-cc---cccCCCCcEEeccCcccCcccCccccC
Q 043647 551 LLPKFTKLRVLSLKKYYITE-LPHSI-GDLKHLRYINLSETMIRCLP-ES---ICSLCNLQFLILRGCYRLKKLPSNLRN 624 (1096)
Q Consensus 551 ~~~~~~~Lr~L~L~~~~~~~-lp~~i-~~l~~Lr~L~L~~~~i~~lp-~~---i~~L~~L~~L~L~~~~~l~~lp~~i~~ 624 (1096)
.+.++++|++|++++|.+.. +|..+ .++++|++|++++|.+...+ .. +.++++|++|++++|......| +..
T Consensus 121 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~ 198 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSR 198 (768)
T ss_dssp GGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTT
T ss_pred HHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--ccc
Confidence 45667777777777776653 34443 66677777777777766443 33 5666666666666653222222 356
Q ss_pred CCCCceEEeccccccccCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhc
Q 043647 625 LINLRHLVVTYVDLIREMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDM 704 (1096)
Q Consensus 625 l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~ 704 (1096)
+++|++|++++|.....+|. ++++++|++|+...... .+.....+..+++|+ .+.+..-.. .. ....
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l-~~~~~~~l~~l~~L~-~L~Ls~n~l---~~-------~~~~ 265 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL-SGDFSRAISTCTELK-LLNISSNQF---VG-------PIPP 265 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCC-CSCHHHHTTTCSSCC-EEECCSSCC---EE-------SCCC
T ss_pred CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcC-CCcccHHHhcCCCCC-EEECCCCcc---cC-------ccCc
Confidence 66666666666663333333 66666666654322111 111112223333333 222111000 00 0000
Q ss_pred cCCCCCCCeEEEeeeCCC-CCCcccCCccccceeEEeecCCCCCCCCC-CCCCcCCcceeecccccceeEecccccCCCC
Q 043647 705 LQPHRSLKELTVKCYGGT-VFPSWMGDPLFSNIVLLRLEDCEKCTSLP-SLGLLGSLKNLTIKGMRRLKSIGFEIYGEGC 782 (1096)
Q Consensus 705 l~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 782 (1096)
..+++|+.|+++++... .+|.++.. .+++|+.|++++|.....+| .++.+++|+.|+++++.....++....
T Consensus 266 -~~l~~L~~L~L~~n~l~~~ip~~~~~-~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l---- 339 (768)
T 3rgz_A 266 -LPLKSLQYLSLAENKFTGEIPDFLSG-ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL---- 339 (768)
T ss_dssp -CCCTTCCEEECCSSEEEESCCCCSCT-TCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHH----
T ss_pred -cccCCCCEEECcCCccCCccCHHHHh-hcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHH----
Confidence 13455566666555444 44544432 13555666665554433344 355555555555555433223332211
Q ss_pred CCCCCCCceecccCCCcCcccccC--------------------ccCCcc--cccccccEEEEecCCCcCccCCC---CC
Q 043647 783 SKPFQALETLCFEDLPEWEHWNSF--------------------KENDHV--ERFACLRQLSIVKCPRLCGRLPN---HL 837 (1096)
Q Consensus 783 ~~~~~~L~~L~l~~~~~l~~~~~~--------------------~~~~~~--~~~~~L~~L~l~~c~~l~~~~p~---~l 837 (1096)
..+++|++|+++++......... ...... ..+++|+.|++++|.. .+.+|. .+
T Consensus 340 -~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~p~~l~~l 417 (768)
T 3rgz_A 340 -LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF-TGKIPPTLSNC 417 (768)
T ss_dssp -TTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE-EEECCGGGGGC
T ss_pred -hcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc-ccccCHHHhcC
Confidence 11445555555443211000000 000001 1145566666666532 223442 34
Q ss_pred CCccEEEEeccc---CccccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCC
Q 043647 838 PILEKLMIYECV---QLVVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHN 914 (1096)
Q Consensus 838 ~~L~~L~l~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~ 914 (1096)
++|+.|++.+|. .....+..+++|+.|++++|.... .....+..+++|++|++++|.....+|..+..
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~---------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 488 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG---------EIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCS---------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccC---------cCCHHHcCCCCceEEEecCCcccCcCCHHHhc
Confidence 566666666653 223345556677777777664321 12334667889999999999866678888899
Q ss_pred CCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCCCCcccCCC-CCCCCcCeEEEccCcCCcCCCCC-----------
Q 043647 915 NTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCPSLVSFPEG-GLPNCSLSVTIGKCEKLKALPNL----------- 982 (1096)
Q Consensus 915 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~l~~l----------- 982 (1096)
+++|+.|++++|.....+|.++..+++|+.|++++|.....+|.. .-.++|+.|++++|+-...+|.-
T Consensus 489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence 999999999998766688888999999999999997665566642 23488999999987644333310
Q ss_pred -------------------------------------------------CCCCCCCcccCCCCCCcceEEEcCCCCcccc
Q 043647 983 -------------------------------------------------NAYESPIDWGLHKLTSLKILCVIGCPDAVSF 1013 (1096)
Q Consensus 983 -------------------------------------------------~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l 1013 (1096)
+.+.+..+..+..+++|+.|++++|.-.+.+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence 0011122335677899999999999655688
Q ss_pred ccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCCCC-CccccccceeeccCcc
Q 043647 1014 PEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFPEA-GLPSSLLELYINDYPL 1084 (1096)
Q Consensus 1014 ~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~-~l~~~L~~L~i~~c~~ 1084 (1096)
|.++ ..+++|+.|++++|.--..+| ..+.++++|+.|++++|.--..+|.. +-.++|++|++++|+.
T Consensus 649 p~~l---~~l~~L~~L~Ls~N~l~g~ip-~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 649 PKEI---GSMPYLFILNLGHNDISGSIP-DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp CGGG---GGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred CHHH---hccccCCEEeCcCCccCCCCC-hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 8764 788999999999955334777 78999999999999995443366652 2356899999999853
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=6.7e-34 Score=337.17 Aligned_cols=262 Identities=18% Similarity=0.220 Sum_probs=205.0
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCc-EEEEEecCccChHHHHHHHHH
Q 043647 179 AVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNL-RSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~-~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
..|||++++++|.++|...+ ..++|+|+||||+||||||+++|++.+++ +|+. ++|+++++.++...++..++.
T Consensus 129 ~~VGRe~eLeeL~elL~~~d----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 35999999999999997532 36899999999999999999999887666 8986 999999999998888888777
Q ss_pred hccCCC------CC-----CCcHHHHHHHHHHHh---CCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCch
Q 043647 257 SITFSP------NS-----LKDLNQIQVQLREAV---AGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCST 322 (1096)
Q Consensus 257 ~l~~~~------~~-----~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 322 (1096)
.++... .+ ..+.+.+...+++.+ ++||+||||||||+. +.|+.+. +||+||||||++
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f~-------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAFN-------LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHHH-------SSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhhC-------CCeEEEEeccCh
Confidence 543210 00 113455666777765 789999999999985 6777652 689999999999
Q ss_pred hhhhhcCCcceeeCC------CCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHHHHhccCC-CH
Q 043647 323 DVALTVGTAEYYNLK------LLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGGLLRCKQ-SD 395 (1096)
Q Consensus 323 ~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~-~~ 395 (1096)
.++..+.....|.++ +|+.+|||+||.+.. +.. ..++..+| |+|+||||+++|+.|+.+. +.
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ 344 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATW 344 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCH
Confidence 998655444456676 999999999999884 221 22344444 9999999999999999875 57
Q ss_pred HHHHHHHhhhccccccCCChHHHHHHHHhcCchhh-HHHhhhhcccCCCccccc--------------cc---------c
Q 043647 396 DEWDEILNSKIWYLSEESNILPVLRLSYHHLPSHL-KRCFAYCAIFPKDYEFEE--------------ME---------S 451 (1096)
Q Consensus 396 ~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~~f~~~a~fp~~~~~~~--------------~e---------~ 451 (1096)
++|+.. ....+..+|++||+.||++. |.||+|||+||+++.|.. .+ +
T Consensus 345 eeW~~~---------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRS 415 (1221)
T 1vt4_I 345 DNWKHV---------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415 (1221)
T ss_dssp HHHHHC---------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSS
T ss_pred HHHhcC---------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhC
Confidence 888753 12569999999999999999 999999999999988761 11 5
Q ss_pred ccccCCCCcceEEehhHHHHHHH
Q 043647 452 IFQPSSNNSFKFIMHDLVNDLAQ 474 (1096)
Q Consensus 452 ~~~~~~~~~~~~~mhdlv~d~~~ 474 (1096)
+++.. +....|+|||++++++.
T Consensus 416 LLq~d-~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 416 LVEKQ-PKESTISIPSIYLELKV 437 (1221)
T ss_dssp SSSBC-SSSSEEBCCCHHHHHHH
T ss_pred CEEEe-CCCCEEEehHHHHHHhc
Confidence 55543 34568999999999663
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.4e-33 Score=338.77 Aligned_cols=489 Identities=16% Similarity=0.135 Sum_probs=310.5
Q ss_pred hhhhhcCCCCcceEEEecccccccC-CCCcCCCCccceeeccccccccc-ccccccCCCCcEEeccCcccCcccC-cccc
Q 043647 547 VLSNLLPKFTKLRVLSLKKYYITEL-PHSIGDLKHLRYINLSETMIRCL-PESICSLCNLQFLILRGCYRLKKLP-SNLR 623 (1096)
Q Consensus 547 ~~~~~~~~~~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp-~~i~ 623 (1096)
.++..|.++++|++|++++|.++.+ |..|+++++|++|+|++|.++.+ |..++++++|++|++++| .+..+| ..++
T Consensus 47 ~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 125 (606)
T 3vq2_A 47 LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIG 125 (606)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCT
T ss_pred eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC-ccccccccccC
Confidence 4455678888888888888888877 66788888888888888888877 778888888888888886 565655 5688
Q ss_pred CCCCCceEEeccccccc-cCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHh
Q 043647 624 NLINLRHLVVTYVDLIR-EMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVL 702 (1096)
Q Consensus 624 ~l~~L~~L~l~~~~~~~-~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~ 702 (1096)
++++|++|++++|.... .+|..++++++|++|+...... .......+..+.+++..+....+..-... ...
T Consensus 126 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-------~~~ 197 (606)
T 3vq2_A 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI-QTITVNDLQFLRENPQVNLSLDMSLNPID-------FIQ 197 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC-CEECTTTTHHHHHCTTCCCEEECTTCCCC-------EEC
T ss_pred CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc-eecChhhhhhhhccccccceeeccCCCcc-------eeC
Confidence 88888888888887332 4677888888888875322211 11111112222222210000000000000 000
Q ss_pred hccCCCCCCCeEEEeeeCCC--CCCcccCCccccceeEEeecCC--CCCCCCCC-----CCCcC--Ccceeeccccccee
Q 043647 703 DMLQPHRSLKELTVKCYGGT--VFPSWMGDPLFSNIVLLRLEDC--EKCTSLPS-----LGLLG--SLKNLTIKGMRRLK 771 (1096)
Q Consensus 703 ~~l~~~~~L~~L~l~~~~~~--~~p~~~~~~~~~~L~~L~L~~~--~~~~~l~~-----l~~l~--~L~~L~L~~~~~l~ 771 (1096)
.......+|+.|+++++... ..|.++.. +++|+.+.+... .....++. +..+. .++.+.+.....+.
T Consensus 198 ~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~--l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~ 275 (606)
T 3vq2_A 198 DQAFQGIKLHELTLRGNFNSSNIMKTCLQN--LAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS 275 (606)
T ss_dssp TTTTTTCEEEEEEEESCCSCHHHHHHHHHT--TTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCC
T ss_pred cccccCceeeeeeccCCccchhHHHHHhcc--ccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccc
Confidence 01111124555555555432 22333322 444444444321 11111110 11111 22333332222222
Q ss_pred EecccccCCCCCCCCCCCceecccCCCcCcccccCccCCcccccccccEEEEecCCCcCccCCC-CCCCccEEEEecccC
Q 043647 772 SIGFEIYGEGCSKPFQALETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLPN-HLPILEKLMIYECVQ 850 (1096)
Q Consensus 772 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~-~l~~L~~L~l~~~~~ 850 (1096)
..... +..+++|+.|.+.++.. ..+. ....+++|++|++++|.. . .+|. .+++|+.|++.+|..
T Consensus 276 ~~~~~------~~~l~~L~~L~l~~~~~-~~l~------~l~~~~~L~~L~l~~n~l-~-~lp~~~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 276 DDIVK------FHCLANVSAMSLAGVSI-KYLE------DVPKHFKWQSLSIIRCQL-K-QFPTLDLPFLKSLTLTMNKG 340 (606)
T ss_dssp GGGGS------CGGGTTCSEEEEESCCC-CCCC------CCCTTCCCSEEEEESCCC-S-SCCCCCCSSCCEEEEESCSS
T ss_pred ccccc------cccCCCCCEEEecCccc-hhhh------hccccccCCEEEcccccC-c-ccccCCCCccceeeccCCcC
Confidence 11111 34478888888877543 2222 156688899999999865 3 5553 578899999988843
Q ss_pred c-cccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCc
Q 043647 851 L-VVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENL 929 (1096)
Q Consensus 851 l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 929 (1096)
. ...+..+++|+.|++++|....... ....+..+++|++|++++|. ++.+|..+..+++|+.|++++|...
T Consensus 341 ~~~~~~~~l~~L~~L~ls~n~l~~~~~-------~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~ 412 (606)
T 3vq2_A 341 SISFKKVALPSLSYLDLSRNALSFSGC-------CSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLK 412 (606)
T ss_dssp CEECCCCCCTTCCEEECCSSCEEEEEE-------CCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEE
T ss_pred ccchhhccCCCCCEEECcCCccCCCcc-------hhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccC
Confidence 3 2356678999999999885332100 12345678899999999987 6777878888999999999997655
Q ss_pred CcCC-CCCCCCCCcCeEEEeCCCCCcccCCC-CCCCCcCeEEEccCcCCcC-CCCCCCCCCCCcccCCCCCCcceEEEcC
Q 043647 930 KSLP-EGLPNLNSLHNIYVWDCPSLVSFPEG-GLPNCSLSVTIGKCEKLKA-LPNLNAYESPIDWGLHKLTSLKILCVIG 1006 (1096)
Q Consensus 930 ~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~-l~~l~~~~~~~~~~l~~l~~L~~L~l~~ 1006 (1096)
...| ..+..+++|+.|++++|......|.. .-.++|+.|++++|.-... ++ ..+.++++|++|++++
T Consensus 413 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS----------NVFANTTNLTFLDLSK 482 (606)
T ss_dssp STTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC----------SCCTTCTTCCEEECTT
T ss_pred CccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchH----------HhhccCCCCCEEECCC
Confidence 5555 57888999999999997644444432 2347899999998754332 33 2688999999999999
Q ss_pred CCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCCCC--CccccccceeeccCcc
Q 043647 1007 CPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFPEA--GLPSSLLELYINDYPL 1084 (1096)
Q Consensus 1007 c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~--~l~~~L~~L~i~~c~~ 1084 (1096)
| .+..++... +..+++|++|++++| .++.++...+.++++|+.|++++ ++++++|.. .++.+|+.|++++||-
T Consensus 483 n-~l~~~~~~~--~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 483 C-QLEQISWGV--FDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSF-NRIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp S-CCCEECTTT--TTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTT-SCCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred C-cCCccChhh--hcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCC-CcCcccCHhHhhhcccCcEEEccCCCc
Confidence 9 666655432 467899999999995 57777447889999999999999 468888874 3355799999988763
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4e-33 Score=370.38 Aligned_cols=287 Identities=20% Similarity=0.302 Sum_probs=226.1
Q ss_pred CCCCccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccc-c--ccCcEEEEEecCcc--ChHH
Q 043647 175 PTEPAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAV-E--MFNLRSWVCVSDDF--DILR 249 (1096)
Q Consensus 175 ~~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~--~f~~~~wv~~~~~~--~~~~ 249 (1096)
+.++.||||++++++|.++|.... ...++|+|+||||+||||||+++|++... . +|+.++||++++.. +...
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~---~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN---GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT---TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhcc---CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 345679999999999999997542 35799999999999999999999998543 2 56788899998854 3445
Q ss_pred HHHHHHHhccCCCC----CCCcHHHHHHHHHHHhCCC--cEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchh
Q 043647 250 ITKSILESITFSPN----SLKDLNQIQVQLREAVAGK--RFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTD 323 (1096)
Q Consensus 250 ~~~~i~~~l~~~~~----~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 323 (1096)
.++.++..+..... ...+.+++...++..+.++ ||||||||||+. ..|+.+ .+|++||||||++.
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCCHH
Confidence 56777777765432 2356788889999999877 999999999975 455443 57899999999999
Q ss_pred hhhh-cCCcceeeCCC-CChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHHHHhccCCCHHHHHHH
Q 043647 324 VALT-VGTAEYYNLKL-LSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGGLLRCKQSDDEWDEI 401 (1096)
Q Consensus 324 v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~ 401 (1096)
++.. .+....+.+++ |+.+||++||...++.. .+...+++++|+++|+|+||||+++|++|+.+. ..|.+.
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~ 341 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYY 341 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHH
Confidence 9854 45567899996 99999999999988432 244567899999999999999999999998775 467777
Q ss_pred Hhhhcccccc---------CCChHHHHHHHHhcCchhhHHHhhhhcccCCCcccccc-----------------c-----
Q 043647 402 LNSKIWYLSE---------ESNILPVLRLSYHHLPSHLKRCFAYCAIFPKDYEFEEM-----------------E----- 450 (1096)
Q Consensus 402 ~~~~~~~~~~---------~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~~~~~-----------------e----- 450 (1096)
++........ ...+.+++.+||+.||+++|.||+|||+||+++.|+.. +
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~ 421 (1249)
T 3sfz_A 342 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNK 421 (1249)
T ss_dssp HHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 6654332211 13588999999999999999999999999999988721 0
Q ss_pred cccccCC-CCcceEEehhHHHHHHHHhhccc
Q 043647 451 SIFQPSS-NNSFKFIMHDLVNDLAQWISGET 480 (1096)
Q Consensus 451 ~~~~~~~-~~~~~~~mhdlv~d~~~~~~~~~ 480 (1096)
++++... +...+|+|||+||++++..+.++
T Consensus 422 sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 422 SLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp TSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred cceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 5565433 33456999999999999987765
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.98 E-value=1e-31 Score=327.49 Aligned_cols=464 Identities=14% Similarity=0.093 Sum_probs=274.6
Q ss_pred hhhhhcCCCCcceEEEecccccccC-CCCcCCCCccceeeccccccccc-ccccccCCCCcEEeccCcccCccc-Ccccc
Q 043647 547 VLSNLLPKFTKLRVLSLKKYYITEL-PHSIGDLKHLRYINLSETMIRCL-PESICSLCNLQFLILRGCYRLKKL-PSNLR 623 (1096)
Q Consensus 547 ~~~~~~~~~~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~ 623 (1096)
..+..|.++++|++|++++|.+..+ |..|+++++|++|+|++|.+..+ |..++++++|++|++++| .+..+ |..++
T Consensus 48 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~~ 126 (606)
T 3t6q_A 48 IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLH 126 (606)
T ss_dssp ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS-CCSCGGGSCCT
T ss_pred CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecccc-CcccCCcchhc
Confidence 3345566666666666666666655 55666666666666666666654 456666666666666664 34444 44566
Q ss_pred CCCCCceEEeccccccccCc-ccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHh
Q 043647 624 NLINLRHLVVTYVDLIREMP-LGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVL 702 (1096)
Q Consensus 624 ~l~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~ 702 (1096)
++++|++|++++|. +..++ +.+..+++|++|+....... . ...
T Consensus 127 ~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-~----------------------------------~~~ 170 (606)
T 3t6q_A 127 NQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIH-Y----------------------------------LSK 170 (606)
T ss_dssp TCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCC-E----------------------------------ECH
T ss_pred cCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCccc-c----------------------------------cCh
Confidence 66666666666665 33331 22333555555532111000 0 001
Q ss_pred hccCCCCCCC--eEEEeeeCCCCCCcccCCccccceeEEeecCCCCCC-------------------------CCC--CC
Q 043647 703 DMLQPHRSLK--ELTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCT-------------------------SLP--SL 753 (1096)
Q Consensus 703 ~~l~~~~~L~--~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~-------------------------~l~--~l 753 (1096)
..+..+++|+ .|+++++.....+..... ..+|+.|++++|.... .++ .+
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~ 248 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFD--SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCCEECTTTTT--TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGG
T ss_pred hhhhhhcccceeEEecCCCccCccChhHhh--hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHh
Confidence 1122334444 455555555444433222 3455555555543110 000 01
Q ss_pred CCcC--CcceeecccccceeEecccccCCCCCCCCCCCceecccCCCcCcccccCccCCcccccccccEEEEecCCCcCc
Q 043647 754 GLLG--SLKNLTIKGMRRLKSIGFEIYGEGCSKPFQALETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCG 831 (1096)
Q Consensus 754 ~~l~--~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 831 (1096)
..+. +|+.|+++++ .+..++.. .+..+++|+.|+++++. +..+. .....+++|++|++++|..- .
T Consensus 249 ~~l~~~~L~~L~l~~n-~l~~~~~~-----~~~~l~~L~~L~l~~n~-l~~lp-----~~l~~l~~L~~L~l~~n~l~-~ 315 (606)
T 3t6q_A 249 EGLCEMSVESINLQKH-YFFNISSN-----TFHCFSGLQELDLTATH-LSELP-----SGLVGLSTLKKLVLSANKFE-N 315 (606)
T ss_dssp GGGGGSEEEEEECTTC-CCSSCCTT-----TTTTCTTCSEEECTTSC-CSCCC-----SSCCSCTTCCEEECTTCCCS-B
T ss_pred chhhcCceeEEEeecC-ccCccCHH-----HhccccCCCEEeccCCc-cCCCC-----hhhcccccCCEEECccCCcC-c
Confidence 1111 4566666554 23333221 12336677777776643 22221 11455677777777776432 1
Q ss_pred cCC---CCCCCccEEEEecccCc----cccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCC
Q 043647 832 RLP---NHLPILEKLMIYECVQL----VVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPK 904 (1096)
Q Consensus 832 ~~p---~~l~~L~~L~l~~~~~l----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 904 (1096)
..| ..+++|+.|++.+|... ...+..+++|++|++++|...... .....+..+++|++|++++|..
T Consensus 316 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~~~~~~l~~L~~L~l~~n~l 388 (606)
T 3t6q_A 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD-------CCNLQLRNLSHLQSLNLSYNEP 388 (606)
T ss_dssp GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE-------ESTTTTTTCTTCCEEECCSCSC
T ss_pred CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc-------CcchhcccCCCCCEEECCCCcC
Confidence 222 34677777777776432 123667888888888887543211 0133567788888888888875
Q ss_pred cccchhhcCCCCCcCeEEEecCCCcCcCCC-CCCCCCCcCeEEEeCCCCCcccCCCC--CCCCcCeEEEccCcCCcC-CC
Q 043647 905 LESIAERFHNNTSLGCIWIWKCENLKSLPE-GLPNLNSLHNIYVWDCPSLVSFPEGG--LPNCSLSVTIGKCEKLKA-LP 980 (1096)
Q Consensus 905 l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~~l~~-l~ 980 (1096)
....+..+..+++|++|++++|......|. .+..+++|+.|++++|. +...+... -.++|++|++++|.--.. ++
T Consensus 389 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 467 (606)
T 3t6q_A 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467 (606)
T ss_dssp EEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTCBCGGGEEC
T ss_pred CcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-cCCcCHHHHhCCCCCCEEECCCCCCCccccc
Confidence 445566778888888998888654444443 47788888999888865 34333222 247888888888753221 11
Q ss_pred CCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCC
Q 043647 981 NLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCP 1060 (1096)
Q Consensus 981 ~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~ 1060 (1096)
....+..+++|++|++++| .+..++.. .+..+++|+.|++++| .++.++...+.++++| .|++++ +
T Consensus 468 --------~~~~~~~l~~L~~L~Ls~n-~l~~~~~~--~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~-N 533 (606)
T 3t6q_A 468 --------KTNSLQTLGRLEILVLSFC-DLSSIDQH--AFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLAS-N 533 (606)
T ss_dssp --------SSCGGGGCTTCCEEECTTS-CCCEECTT--TTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCS-S
T ss_pred --------cchhhccCCCccEEECCCC-ccCccChh--hhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcC-C
Confidence 1125778899999999999 66666433 2467889999999994 5776665788889999 999999 5
Q ss_pred CCCCCCCCCc--cccccceeeccCcc
Q 043647 1061 KLTSFPEAGL--PSSLLELYINDYPL 1084 (1096)
Q Consensus 1061 ~l~~l~~~~l--~~~L~~L~i~~c~~ 1084 (1096)
.++.+++..+ .++|+.|++++||-
T Consensus 534 ~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 534 HISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp CCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred cccccCHhhcccCCCCCEEeCCCCCc
Confidence 6777776543 46899999998873
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.98 E-value=3.5e-31 Score=327.23 Aligned_cols=517 Identities=17% Similarity=0.101 Sum_probs=327.1
Q ss_pred cceeeeeeecccCCcccccccccCcCceeecccchhhhhhhhccchhhhhhhhcCCCCcceEEEecccccccCC-CCcCC
Q 043647 499 RARHSSYTCGFYDGKSKFEVFHEVEHLRTFLPVLSYEIRLLTRYITDVVLSNLLPKFTKLRVLSLKKYYITELP-HSIGD 577 (1096)
Q Consensus 499 ~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~lp-~~i~~ 577 (1096)
..+++.+........ ....+..+++|+.+.... +....+++..|..+++|++|++++|.+..+| ..|++
T Consensus 50 ~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~---------n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 119 (680)
T 1ziw_A 50 QLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQH---------NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119 (680)
T ss_dssp TCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCS---------SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTT
T ss_pred cCcEEECCCCccCcc-CHHHHhcccCcCEEECCC---------CccCccChhhhccCCCCCEEECCCCccCccChhHccc
Confidence 445555544332221 123466788888887654 1122345567899999999999999999885 67999
Q ss_pred CCccceeeccccccccc-ccccccCCCCcEEeccCcccCcccCcc-c--cCCCCCceEEeccccccccCcccCCCCCCCC
Q 043647 578 LKHLRYINLSETMIRCL-PESICSLCNLQFLILRGCYRLKKLPSN-L--RNLINLRHLVVTYVDLIREMPLGIKELKCLQ 653 (1096)
Q Consensus 578 l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i--~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 653 (1096)
+++|++|++++|.+... |..++++++|++|++++| .+..++.. + ..+++|++|++++|......|..++.+.+|+
T Consensus 120 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 198 (680)
T 1ziw_A 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 198 (680)
T ss_dssp CTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEEC
T ss_pred cCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhh
Confidence 99999999999999866 567899999999999996 56666543 3 3568999999999973333344566666665
Q ss_pred cCCceEecccCCCCccccc---ccccccceEEEee------------------cCCCCCCcchHHHHHHhhccCCCCCCC
Q 043647 654 MLSNFIVGMVTGSRLKDLK---DFKLLRGELCISR------------------LDYFDDSRNEALEKNVLDMLQPHRSLK 712 (1096)
Q Consensus 654 ~L~~~~~~~~~~~~~~~L~---~l~~L~~~l~i~~------------------l~~~~~~~~~~~~~~~~~~l~~~~~L~ 712 (1096)
.|........ ......+. ..+.++ .+.+.. ++.++...+. ........+..+++|+
T Consensus 199 ~L~l~~~~l~-~~~~~~~~~~l~~~~L~-~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 275 (680)
T 1ziw_A 199 GLFLNNVQLG-PSLTEKLCLELANTSIR-NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLE 275 (680)
T ss_dssp EEECTTCCCH-HHHHHHHHHHHTTSCCC-EEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC-CCEECTTTTTTCTTCC
T ss_pred hhhccccccC-hhhHHHHHHHhhhcccc-EEEccCCcccccChhHhhccCcCCCCEEECCCCC-cCccCcccccCccccc
Confidence 5421110000 00000000 000010 000000 0000000000 0001112344455666
Q ss_pred eEEEeeeCCCCC-CcccCCccccceeEEeecCCCCCC-----CCC-----CCCCcCCcceeecccccceeEecccccCCC
Q 043647 713 ELTVKCYGGTVF-PSWMGDPLFSNIVLLRLEDCEKCT-----SLP-----SLGLLGSLKNLTIKGMRRLKSIGFEIYGEG 781 (1096)
Q Consensus 713 ~L~l~~~~~~~~-p~~~~~~~~~~L~~L~L~~~~~~~-----~l~-----~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 781 (1096)
.|+++++..... |.++.. +++|+.|++++|.... .+| .++.+++|+.|+++++. +..+...
T Consensus 276 ~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~----- 347 (680)
T 1ziw_A 276 YFFLEYNNIQHLFSHSLHG--LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSN----- 347 (680)
T ss_dssp EEECCSCCBSEECTTTTTT--CTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCCTT-----
T ss_pred EeeCCCCccCccChhhhcC--CCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCChh-----
Confidence 666665554432 223332 5566666666543211 222 34556666666666542 2222211
Q ss_pred CCCCCCCCceecccCCCc-CcccccCccCCcccccccccEEEEecCCCcCccCC---CCCCCccEEEEecccCc---c-c
Q 043647 782 CSKPFQALETLCFEDLPE-WEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLP---NHLPILEKLMIYECVQL---V-V 853 (1096)
Q Consensus 782 ~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p---~~l~~L~~L~l~~~~~l---~-~ 853 (1096)
.+..+++|+.|+++++.. ......... .....++|+.|++++|.. .+..| ..+++|+.|++.++... . .
T Consensus 348 ~~~~l~~L~~L~Ls~n~~~~~~l~~~~f--~~~~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 424 (680)
T 1ziw_A 348 MFTGLINLKYLSLSNSFTSLRTLTNETF--VSLAHSPLHILNLTKNKI-SKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424 (680)
T ss_dssp TTTTCTTCCEEECTTCBSCCCEECTTTT--GGGTTSCCCEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred HhccccCCcEEECCCCchhhhhcchhhh--cccccCcCceEECCCCCC-CeEChhhhhCCCCCCEEeCCCCcCccccCcc
Confidence 123366777777765431 111110000 011235788888888643 32334 35788999999987642 1 4
Q ss_pred cCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCC--cccchhhcCCCCCcCeEEEecCCCcCc
Q 043647 854 SFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPK--LESIAERFHNNTSLGCIWIWKCENLKS 931 (1096)
Q Consensus 854 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~--l~~l~~~~~~l~~L~~L~l~~c~~l~~ 931 (1096)
.+..+++|++|++++|... ......+..+++|+.|++++|.. +..+|..+..+++|+.|++++|. ++.
T Consensus 425 ~~~~l~~L~~L~Ls~n~l~---------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~ 494 (680)
T 1ziw_A 425 EWRGLENIFEIYLSYNKYL---------QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IAN 494 (680)
T ss_dssp GGTTCTTCCEEECCSCSEE---------ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCC
T ss_pred cccCcccccEEecCCCCcc---------eeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC-CCc
Confidence 6778999999999999632 33455677899999999999863 24568889999999999999964 556
Q ss_pred CC-CCCCCCCCcCeEEEeCCCCCcccCCCC----------CCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcc
Q 043647 932 LP-EGLPNLNSLHNIYVWDCPSLVSFPEGG----------LPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLK 1000 (1096)
Q Consensus 932 lp-~~l~~l~~L~~L~l~~c~~l~~l~~~~----------~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~ 1000 (1096)
+| ..+..+++|++|++++| .++.++... -.++|+.|+++++ .++.++. ..+.++++|+
T Consensus 495 i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~---------~~~~~l~~L~ 563 (680)
T 1ziw_A 495 INDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPV---------EVFKDLFELK 563 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCT---------TTTTTCTTCC
T ss_pred CChhhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCH---------HHcccccCcc
Confidence 65 45889999999999995 566554321 2278999999986 5556552 3588999999
Q ss_pred eEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCC-CCCCcCeEeeccCCCCCCC
Q 043647 1001 ILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFR-NLAFLEYLQIRDCPKLTSF 1065 (1096)
Q Consensus 1001 ~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~-~l~~L~~L~l~~c~~l~~l 1065 (1096)
.|++++| .++.+|... |..+++|+.|++++ +.++.++...+. .+++|+.|++++||..-+-
T Consensus 564 ~L~Ls~N-~l~~l~~~~--~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 564 IIDLGLN-NLNTLPASV--FNNQVSLKSLNLQK-NLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp EEECCSS-CCCCCCTTT--TTTCTTCCEEECTT-SCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred eeECCCC-CCCcCCHhH--hCCCCCCCEEECCC-CcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 9999999 888998763 46789999999999 579988865565 6889999999997764443
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=5.8e-31 Score=320.81 Aligned_cols=508 Identities=14% Similarity=0.063 Sum_probs=342.6
Q ss_pred ccCCcceeeeeeecccCCcccccccccCcCceeecccchhhhhhhhccchhhhhhhhcCCCCcceEEEecccccccC-CC
Q 043647 495 RRFRRARHSSYTCGFYDGKSKFEVFHEVEHLRTFLPVLSYEIRLLTRYITDVVLSNLLPKFTKLRVLSLKKYYITEL-PH 573 (1096)
Q Consensus 495 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~l-p~ 573 (1096)
..+...+++.+........ ....+..+++|+.+.... +......+..|.++++|++|++++|.++.+ |.
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~---------n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 98 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSR---------CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG 98 (606)
T ss_dssp TSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTT---------CCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT
T ss_pred CCCCCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCC---------CcccccCHHHhhchhhcCEeECCCCcccccChh
Confidence 3456677777765543322 123567788898887654 122344567789999999999999999988 88
Q ss_pred CcCCCCccceeecccccccccc-cccccCCCCcEEeccCcccCc--ccCccccCCCCCceEEeccccccccCcccCCCCC
Q 043647 574 SIGDLKHLRYINLSETMIRCLP-ESICSLCNLQFLILRGCYRLK--KLPSNLRNLINLRHLVVTYVDLIREMPLGIKELK 650 (1096)
Q Consensus 574 ~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~ 650 (1096)
.|+++++|++|++++|.+..+| ..++++++|++|++++| .+. .+|..++++++|++|++++|......|..++.++
T Consensus 99 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 99 SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177 (606)
T ss_dssp SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH
T ss_pred hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh
Confidence 9999999999999999999886 68999999999999997 455 5899999999999999999984333455677777
Q ss_pred CCCc-CCceEecccCCCCcc-cccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCCeEEEeeeCCCCCC---
Q 043647 651 CLQM-LSNFIVGMVTGSRLK-DLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKELTVKCYGGTVFP--- 725 (1096)
Q Consensus 651 ~L~~-L~~~~~~~~~~~~~~-~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p--- 725 (1096)
+|+. +............+. ..-...+|+ .+.+.. +..........+..++.|+.+.+.........
T Consensus 178 ~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~-~L~L~~--------n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~ 248 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLH-ELTLRG--------NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248 (606)
T ss_dssp HCTTCCCEEECTTCCCCEECTTTTTTCEEE-EEEEES--------CCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred ccccccceeeccCCCcceeCcccccCceee-eeeccC--------CccchhHHHHHhccccccccccccccccccCCccc
Confidence 7763 111111111100000 000001222 222221 11111233445667778888877654432211
Q ss_pred ----cccCCccccceeEEeecCCC-CCCCCCCCCCcCCcceeecccccceeEecccccCCCCCCCCCCCceecccCCCcC
Q 043647 726 ----SWMGDPLFSNIVLLRLEDCE-KCTSLPSLGLLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQALETLCFEDLPEW 800 (1096)
Q Consensus 726 ----~~~~~~~~~~L~~L~L~~~~-~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 800 (1096)
.++....--.++.+.+..+. ....+|.+..+++|+.|++.++. +..++ .+..+++|+.|.+.++..
T Consensus 249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~-------~l~~~~~L~~L~l~~n~l- 319 (606)
T 3vq2_A 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLE-------DVPKHFKWQSLSIIRCQL- 319 (606)
T ss_dssp CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCC-CCCCC-------CCCTTCCCSEEEEESCCC-
T ss_pred ccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCcc-chhhh-------hccccccCCEEEcccccC-
Confidence 11111111246667774433 33355667888888888888753 33333 123477888888887654
Q ss_pred cccccCccCCcccccccccEEEEecCCCcCccCCCCCCCccEEEEecccCc-----cccCCCCCCcceEEeccCCCcccc
Q 043647 801 EHWNSFKENDHVERFACLRQLSIVKCPRLCGRLPNHLPILEKLMIYECVQL-----VVSFSSLPLLCKLEIDRCKGVACR 875 (1096)
Q Consensus 801 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l-----~~~~~~l~~L~~L~l~~~~~~~~~ 875 (1096)
..+.. . .+++|+.|++++|..+.......+++|+.|++++|... ...+..+++|++|++++|....
T Consensus 320 ~~lp~------~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-- 390 (606)
T 3vq2_A 320 KQFPT------L-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-- 390 (606)
T ss_dssp SSCCC------C-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE--
T ss_pred ccccc------C-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc--
Confidence 33321 3 68889999998886554232346788999988877532 2345678899999999886332
Q ss_pred CCCCcccccCCCCCCCCCccEEEEccCCCcccch-hhcCCCCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCCCCc
Q 043647 876 SPADLMSINSDSFKYFRALQQLEILDCPKLESIA-ERFHNNTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCPSLV 954 (1096)
Q Consensus 876 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~ 954 (1096)
+. ..+..+++|+.|++++|......+ ..+..+++|++|++++|......|..+..+++|++|++++|....
T Consensus 391 -------~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 462 (606)
T 3vq2_A 391 -------MS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462 (606)
T ss_dssp -------EC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred -------ch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC
Confidence 12 456778899999999987444444 467889999999999987666678888899999999999865433
Q ss_pred c-cCCC-CCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCcccc-ccccccCcCCCCccEEEe
Q 043647 955 S-FPEG-GLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSF-PEEEIGMTFPSSLTELVI 1031 (1096)
Q Consensus 955 ~-l~~~-~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l-~~~~~~~~~~~sL~~L~l 1031 (1096)
. +|.. ...++|+.|++++|.-....+ ..+.++++|++|++++| .+..+ |.. +..+++|+.|++
T Consensus 463 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----------~~~~~l~~L~~L~Ls~N-~l~~~~~~~---~~~l~~L~~L~l 528 (606)
T 3vq2_A 463 NTLSNVFANTTNLTFLDLSKCQLEQISW----------GVFDTLHRLQLLNMSHN-NLLFLDSSH---YNQLYSLSTLDC 528 (606)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECT----------TTTTTCTTCCEEECCSS-CCSCEEGGG---TTTCTTCCEEEC
T ss_pred cchHHhhccCCCCCEEECCCCcCCccCh----------hhhcccccCCEEECCCC-cCCCcCHHH---ccCCCcCCEEEC
Confidence 2 3432 234889999999884333333 36788999999999999 56655 443 467889999999
Q ss_pred ccCCCCcccCcCCCCCCC-CcCeEeeccCCCCCC
Q 043647 1032 VRFPKLKYLSSNGFRNLA-FLEYLQIRDCPKLTS 1064 (1096)
Q Consensus 1032 ~~c~~l~~l~~~~l~~l~-~L~~L~l~~c~~l~~ 1064 (1096)
++| +++.+| ..+..++ +|++|++++|+..-.
T Consensus 529 ~~N-~l~~~p-~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 529 SFN-RIETSK-GILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp TTS-CCCCEE-SCGGGSCTTCCEEECCSCCCCCS
T ss_pred CCC-cCcccC-HhHhhhcccCcEEEccCCCcccC
Confidence 994 588998 4588887 599999999665433
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=4.4e-30 Score=313.02 Aligned_cols=460 Identities=16% Similarity=0.148 Sum_probs=329.8
Q ss_pred CcceEEEecccccccC-CCCcCCCCccceeeccccccccc-ccccccCCCCcEEeccCcccCcccCccccCCCCCceEEe
Q 043647 556 TKLRVLSLKKYYITEL-PHSIGDLKHLRYINLSETMIRCL-PESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLVV 633 (1096)
Q Consensus 556 ~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l 633 (1096)
+.+++|++++|.++.+ |..|+++++|++|+|++|.+..+ |..|.++++|++|+|++|......|..++++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 4789999999999988 77899999999999999999877 778999999999999997444445778999999999999
Q ss_pred ccccccccC-cccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCC
Q 043647 634 TYVDLIREM-PLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLK 712 (1096)
Q Consensus 634 ~~~~~~~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 712 (1096)
++|. +..+ |..++++++|++|...... +..+ ....+..+++|+
T Consensus 113 ~~n~-i~~l~~~~~~~l~~L~~L~L~~n~------l~~~-----------------------------~~~~~~~l~~L~ 156 (606)
T 3t6q_A 113 IQTG-ISSIDFIPLHNQKTLESLYLGSNH------ISSI-----------------------------KLPKGFPTEKLK 156 (606)
T ss_dssp TTSC-CSCGGGSCCTTCTTCCEEECCSSC------CCCC-----------------------------CCCTTCCCTTCC
T ss_pred cccC-cccCCcchhccCCcccEEECCCCc------cccc-----------------------------CcccccCCcccC
Confidence 9998 5555 5668888888888532111 1100 001223367899
Q ss_pred eEEEeeeCCCCCC-cccCCcccccee--EEeecCCCCCCCCCCCCCcCCcceeecccccceeEe------------cccc
Q 043647 713 ELTVKCYGGTVFP-SWMGDPLFSNIV--LLRLEDCEKCTSLPSLGLLGSLKNLTIKGMRRLKSI------------GFEI 777 (1096)
Q Consensus 713 ~L~l~~~~~~~~p-~~~~~~~~~~L~--~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~------------~~~~ 777 (1096)
.|++++|....++ .++.. +++|+ .|++++|......|.....++|+.|++.++..+... ....
T Consensus 157 ~L~L~~n~l~~~~~~~~~~--l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~ 234 (606)
T 3t6q_A 157 VLDFQNNAIHYLSKEDMSS--LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234 (606)
T ss_dssp EEECCSSCCCEECHHHHHT--TTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCC
T ss_pred EEEcccCcccccChhhhhh--hcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechh
Confidence 9999999877664 33433 77888 889999976666665566678999999876522111 0000
Q ss_pred cC--------CCCCCCC--CCCceecccCCCcCcccccCccCCcccccccccEEEEecCCCcCccCCC---CCCCccEEE
Q 043647 778 YG--------EGCSKPF--QALETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLPN---HLPILEKLM 844 (1096)
Q Consensus 778 ~~--------~~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~ 844 (1096)
.. ...+..+ .+|+.|++.+.. +..... ..+..+++|+.|++++|. +. .+|. .+++|+.|+
T Consensus 235 ~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~-l~~~~~----~~~~~l~~L~~L~l~~n~-l~-~lp~~l~~l~~L~~L~ 307 (606)
T 3t6q_A 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISS----NTFHCFSGLQELDLTATH-LS-ELPSGLVGLSTLKKLV 307 (606)
T ss_dssp CTTSCCCCCCGGGGGGGGGSEEEEEECTTCC-CSSCCT----TTTTTCTTCSEEECTTSC-CS-CCCSSCCSCTTCCEEE
T ss_pred hccccccccChhHhchhhcCceeEEEeecCc-cCccCH----HHhccccCCCEEeccCCc-cC-CCChhhcccccCCEEE
Confidence 00 0000111 156777776643 222211 115678999999999974 44 5664 457899999
Q ss_pred EecccCc---cccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccc--hhhcCCCCCcC
Q 043647 845 IYECVQL---VVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESI--AERFHNNTSLG 919 (1096)
Q Consensus 845 l~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l--~~~~~~l~~L~ 919 (1096)
+.+|... ...+..+++|+.|++++|.... .+....+..+++|++|++++|...... +..+..+++|+
T Consensus 308 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 379 (606)
T 3t6q_A 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRL--------ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379 (606)
T ss_dssp CTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC--------BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCC
T ss_pred CccCCcCcCchhhhhccCcCCEEECCCCCccc--------ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCC
Confidence 9887533 2357778999999999986432 223445778899999999998744333 56788999999
Q ss_pred eEEEecCCCcCcCCCCCCCCCCcCeEEEeCCCCCcccCCC--CCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCC
Q 043647 920 CIWIWKCENLKSLPEGLPNLNSLHNIYVWDCPSLVSFPEG--GLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLT 997 (1096)
Q Consensus 920 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~ 997 (1096)
+|++++|......|..+..+++|+.|++++|......+.. .-.++|+.|++++|..-...+ ..+.+++
T Consensus 380 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~~~~~l~ 449 (606)
T 3t6q_A 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE----------QLFDGLP 449 (606)
T ss_dssp EEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT----------TTTTTCT
T ss_pred EEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH----------HHHhCCC
Confidence 9999997655566788899999999999996543333332 234889999999975433333 3678899
Q ss_pred CcceEEEcCCCCccc--cccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCCCCCc--ccc
Q 043647 998 SLKILCVIGCPDAVS--FPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFPEAGL--PSS 1073 (1096)
Q Consensus 998 ~L~~L~l~~c~~l~~--l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~l--~~~ 1073 (1096)
+|++|++++| .+.. ++. ...+..+++|+.|++++| .++.++...+.++++|++|++++ +.++.++...+ .++
T Consensus 450 ~L~~L~L~~n-~l~~~~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~ 525 (606)
T 3t6q_A 450 ALQHLNLQGN-HFPKGNIQK-TNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSH-NRLTSSSIEALSHLKG 525 (606)
T ss_dssp TCCEEECTTC-BCGGGEECS-SCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCS-SCCCGGGGGGGTTCCS
T ss_pred CCCEEECCCC-CCCcccccc-chhhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCC-CccCcCChhHhCcccc
Confidence 9999999999 4443 221 123467899999999995 58888668899999999999999 46676655443 457
Q ss_pred ccceeeccCc
Q 043647 1074 LLELYINDYP 1083 (1096)
Q Consensus 1074 L~~L~i~~c~ 1083 (1096)
| .|++++|.
T Consensus 526 L-~L~L~~N~ 534 (606)
T 3t6q_A 526 I-YLNLASNH 534 (606)
T ss_dssp C-EEECCSSC
T ss_pred c-EEECcCCc
Confidence 8 89999884
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=5.1e-30 Score=308.61 Aligned_cols=444 Identities=20% Similarity=0.223 Sum_probs=266.3
Q ss_pred hcCCCCcceEEEecccccccCC-CCcCCCCccceeecccccccccccc-cccCCCCcEEeccCcccCc--ccCccccCCC
Q 043647 551 LLPKFTKLRVLSLKKYYITELP-HSIGDLKHLRYINLSETMIRCLPES-ICSLCNLQFLILRGCYRLK--KLPSNLRNLI 626 (1096)
Q Consensus 551 ~~~~~~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~--~lp~~i~~l~ 626 (1096)
.|..+++|++|++++|.++.++ ..|+++.+|++|++++|.+..+|+. ++++++|++|++++| .+. ..|..+++++
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLT 123 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCT
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC-cccccchhhhhhccC
Confidence 3444445555555544444432 3444444555555555444444332 444455555555443 233 2233444444
Q ss_pred CCceEEeccccccccCc-ccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhcc
Q 043647 627 NLRHLVVTYVDLIREMP-LGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDML 705 (1096)
Q Consensus 627 ~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l 705 (1096)
+|++|++++|..+..+| ..++++++|++|....... .......+
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l-----------------------------------~~~~~~~l 168 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL-----------------------------------RNYQSQSL 168 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC-----------------------------------CEECTTTT
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcc-----------------------------------cccChhhh
Confidence 55555554444333333 2344444444442211100 00122345
Q ss_pred CCCCCCCeEEEeeeCCCCCCcccCCccccceeEEeecCCCCCCC----CCCCCCcCCcceeecccccceeEecccccCCC
Q 043647 706 QPHRSLKELTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCTS----LPSLGLLGSLKNLTIKGMRRLKSIGFEIYGEG 781 (1096)
Q Consensus 706 ~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~----l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 781 (1096)
..+++|+.|+++++....+|.++.. .+++|+.|++++|...+. .+....+++|+.|++.++. +......... .
T Consensus 169 ~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~-~ 245 (549)
T 2z81_A 169 KSIRDIHHLTLHLSESAFLLEIFAD-ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV-LTDESFNELL-K 245 (549)
T ss_dssp TTCSEEEEEEEECSBSTTHHHHHHH-STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE-EEHHHHHHHH-G
T ss_pred hccccCceEecccCcccccchhhHh-hcccccEEEccCCccccccccccchhhhhhcccceeccccc-cchhHHHHHH-H
Confidence 5566777788877776666665432 267888888887754431 2234456778888887652 2211110000 0
Q ss_pred CCCCCCCCceecccCCCcC--cccccCccCCcccccccccEEEEecCCCcCc----cCC---CCCCCccEEEEecccCc-
Q 043647 782 CSKPFQALETLCFEDLPEW--EHWNSFKENDHVERFACLRQLSIVKCPRLCG----RLP---NHLPILEKLMIYECVQL- 851 (1096)
Q Consensus 782 ~~~~~~~L~~L~l~~~~~l--~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~----~~p---~~l~~L~~L~l~~~~~l- 851 (1096)
....+++|+.|.+.++... ..+.... ......+++|+.|.+.++..-.. .++ ...++|+.|.+.++...
T Consensus 246 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ 324 (549)
T 2z81_A 246 LLRYILELSEVEFDDCTLNGLGDFNPSE-SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL 324 (549)
T ss_dssp GGGGCTTCCEEEEESCEEECCSCCCCCT-TTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC
T ss_pred Hhhhhccccccccccccccccccccccc-hhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc
Confidence 1133667777777665421 1111000 01135677888888887642110 011 12467888888886532
Q ss_pred -cccC-CCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccch---hhcCCCCCcCeEEEecC
Q 043647 852 -VVSF-SSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIA---ERFHNNTSLGCIWIWKC 926 (1096)
Q Consensus 852 -~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~---~~~~~l~~L~~L~l~~c 926 (1096)
...+ ..+++|+.|++++|...... ......+..+++|++|++++|. ++.++ ..+..+++|++|++++|
T Consensus 325 ip~~~~~~l~~L~~L~Ls~N~l~~~~------~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 325 VPCSFSQHLKSLEFLDLSENLMVEEY------LKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp CCHHHHHHCTTCCEEECCSSCCCHHH------HHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred CCHHHHhcCccccEEEccCCcccccc------ccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCC
Confidence 1122 35889999999998643210 0002235678899999999986 55554 35788999999999996
Q ss_pred CCcCcCCCCCCCCCCcCeEEEeCCCCCcccCCCCCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcC
Q 043647 927 ENLKSLPEGLPNLNSLHNIYVWDCPSLVSFPEGGLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIG 1006 (1096)
Q Consensus 927 ~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~ 1006 (1096)
.++.+|..+..+++|++|++++|. ++.+|. ..+++|+.|++++| +++.+ ...+++|++|++++
T Consensus 398 -~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~-~~~~~L~~L~Ls~N-~l~~~-------------~~~l~~L~~L~Ls~ 460 (549)
T 2z81_A 398 -TFHPMPDSCQWPEKMRFLNLSSTG-IRVVKT-CIPQTLEVLDVSNN-NLDSF-------------SLFLPRLQELYISR 460 (549)
T ss_dssp -CCCCCCSCCCCCTTCCEEECTTSC-CSCCCT-TSCTTCSEEECCSS-CCSCC-------------CCCCTTCCEEECCS
T ss_pred -CCccCChhhcccccccEEECCCCC-cccccc-hhcCCceEEECCCC-Chhhh-------------cccCChhcEEECCC
Confidence 677899989999999999999954 777764 45689999999987 34442 34788999999999
Q ss_pred CCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCC
Q 043647 1007 CPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTS 1064 (1096)
Q Consensus 1007 c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~ 1064 (1096)
| .+..+|.. ..+++|+.|++++ ++++.++...+..+++|+.|++++|+....
T Consensus 461 N-~l~~ip~~----~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 461 N-KLKTLPDA----SLFPVLLVMKISR-NQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp S-CCSSCCCG----GGCTTCCEEECCS-SCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred C-ccCcCCCc----ccCccCCEEecCC-CccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 9 78888873 5688999999999 568888766788899999999999775433
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.1e-28 Score=310.31 Aligned_cols=464 Identities=19% Similarity=0.171 Sum_probs=266.3
Q ss_pred hhhhcCCCCcceEEEecccc-cccC-CCCcCCCCccceeeccccccccc-ccccccCCCCcEEeccCcccCcccCcc--c
Q 043647 548 LSNLLPKFTKLRVLSLKKYY-ITEL-PHSIGDLKHLRYINLSETMIRCL-PESICSLCNLQFLILRGCYRLKKLPSN--L 622 (1096)
Q Consensus 548 ~~~~~~~~~~Lr~L~L~~~~-~~~l-p~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~--i 622 (1096)
.+..|..+++|++|+|++|. +..+ |..|+++++|++|+|++|.+..+ |..++++++|++|+|++|.....+|.. +
T Consensus 40 ~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 40 TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence 34456666666666666663 3344 55666666666666666666655 556666666666666665332334443 5
Q ss_pred cCCCCCceEEeccccccccCc--ccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHH
Q 043647 623 RNLINLRHLVVTYVDLIREMP--LGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKN 700 (1096)
Q Consensus 623 ~~l~~L~~L~l~~~~~~~~~p--~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~ 700 (1096)
+++++|++|++++|. +..++ ..++++++|++|...... +. ..
T Consensus 120 ~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~------i~------------------~~----------- 163 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQ------IF------------------LV----------- 163 (844)
T ss_dssp SSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSC------CC------------------CC-----------
T ss_pred cccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCc------CC------------------ee-----------
Confidence 666666666666665 33332 345666666665321110 00 00
Q ss_pred HhhccCCC--CCCCeEEEeeeCCCC-CCcccCCcccc------ceeEEeecCCCCCCCCC-CC---CCcCCcceeecccc
Q 043647 701 VLDMLQPH--RSLKELTVKCYGGTV-FPSWMGDPLFS------NIVLLRLEDCEKCTSLP-SL---GLLGSLKNLTIKGM 767 (1096)
Q Consensus 701 ~~~~l~~~--~~L~~L~l~~~~~~~-~p~~~~~~~~~------~L~~L~L~~~~~~~~l~-~l---~~l~~L~~L~L~~~ 767 (1096)
....+.++ ++|+.|+++++.... .|..+.. ++ +|+.|++++|......+ .+ ...+.+..|.+.++
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~--~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK--CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS--SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred CHHHcccccCCccceEECCCCccccccccchhh--cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 00011111 578888888776543 2322221 22 48999999885544333 11 12245556655421
Q ss_pred cceeEeccc-c--cCCCCCC--CCCCCceecccCCCcCcccccCccCCcccccccccEEEEecCCCcCccCC---CCCCC
Q 043647 768 RRLKSIGFE-I--YGEGCSK--PFQALETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLP---NHLPI 839 (1096)
Q Consensus 768 ~~l~~~~~~-~--~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p---~~l~~ 839 (1096)
..-...... + .....+. ..++|+.|++++.... .... .....+++|+.|++++|.. .+..| ..+++
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~-~~~~----~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~ 315 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNS----RVFETLKDLKVLNLAYNKI-NKIADEAFYGLDN 315 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC-EECS----CCSSSCCCCCEEEEESCCC-CEECTTTTTTCSS
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCccc-ccCh----hhhhcCCCCCEEECCCCcC-CCCChHHhcCCCC
Confidence 100000000 0 0000111 1356777777654321 1111 1145677778888877543 22323 34667
Q ss_pred ccEEEEecccCc---cccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCC
Q 043647 840 LEKLMIYECVQL---VVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNT 916 (1096)
Q Consensus 840 L~~L~l~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~ 916 (1096)
|+.|++++|.-. ...+..+++|+.|++++|... .+....+..+++|+.|++++|. ++.++ .++
T Consensus 316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~---------~~~~~~~~~l~~L~~L~Ls~N~-l~~i~----~~~ 381 (844)
T 3j0a_A 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA---------IIQDQTFKFLEKLQTLDLRDNA-LTTIH----FIP 381 (844)
T ss_dssp CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC---------CCCSSCSCSCCCCCEEEEETCC-SCCCS----SCC
T ss_pred CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC---------ccChhhhcCCCCCCEEECCCCC-CCccc----CCC
Confidence 777777776421 235666777888888777432 2233445667777777777765 44333 266
Q ss_pred CcCeEEEecCCCcCcCCCC----------------------CCCCCCcCeEEEeCCCCCcccCCCC---CCCCcCeEEEc
Q 043647 917 SLGCIWIWKCENLKSLPEG----------------------LPNLNSLHNIYVWDCPSLVSFPEGG---LPNCSLSVTIG 971 (1096)
Q Consensus 917 ~L~~L~l~~c~~l~~lp~~----------------------l~~l~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~l~ 971 (1096)
+|+.|++++| .+..+|.. +..+++|+.|++++| .++.++... ..++|+.|+++
T Consensus 382 ~L~~L~l~~N-~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls 459 (844)
T 3j0a_A 382 SIPDIFLSGN-KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLG 459 (844)
T ss_dssp SCSEEEEESC-CCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEE
T ss_pred CcchhccCCC-CcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCC-cccccccccccccCCccccccCC
Confidence 6666666664 34444432 236778888888874 344443221 23778888888
Q ss_pred cCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCc
Q 043647 972 KCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFL 1051 (1096)
Q Consensus 972 ~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L 1051 (1096)
++. ++.++. .......+.++++|+.|++++| .+..+|... +..+++|+.|++++ |+++.+|...+. ++|
T Consensus 460 ~N~-l~~~~~----~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L~~L~Ls~-N~l~~l~~~~~~--~~L 528 (844)
T 3j0a_A 460 ENM-LQLAWE----TELCWDVFEGLSHLQVLYLNHN-YLNSLPPGV--FSHLTALRGLSLNS-NRLTVLSHNDLP--ANL 528 (844)
T ss_dssp SCC-CSSSCC----SCCCSSCSSCBCCEECCCCCHH-HHTTCCTTS--SSSCCSCSEEEEES-CCCSSCCCCCCC--SCC
T ss_pred CCc-cccccc----cccchhhhcCcccccEEECCCC-cccccChhH--ccchhhhheeECCC-CCCCccChhhhh--ccc
Confidence 753 322210 0111235788899999999999 788877653 46789999999999 678988865555 899
Q ss_pred CeEeeccCCCCCCCCCCCccccccceeeccCcc
Q 043647 1052 EYLQIRDCPKLTSFPEAGLPSSLLELYINDYPL 1084 (1096)
Q Consensus 1052 ~~L~l~~c~~l~~l~~~~l~~~L~~L~i~~c~~ 1084 (1096)
+.|++++ +.++.+++..+ ++|+.|++++||-
T Consensus 529 ~~L~Ls~-N~l~~~~~~~~-~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 529 EILDISR-NQLLAPNPDVF-VSLSVLDITHNKF 559 (844)
T ss_dssp CEEEEEE-ECCCCCCSCCC-SSCCEEEEEEECC
T ss_pred cEEECCC-CcCCCCChhHh-CCcCEEEecCCCc
Confidence 9999999 67787776554 4899999988663
No 14
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=4.3e-30 Score=310.88 Aligned_cols=281 Identities=22% Similarity=0.331 Sum_probs=210.4
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccc-c-cc-CcEEEEEecCccChHHHHHH
Q 043647 177 EPAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAV-E-MF-NLRSWVCVSDDFDILRITKS 253 (1096)
Q Consensus 177 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~-~f-~~~~wv~~~~~~~~~~~~~~ 253 (1096)
++.||||+.++++|.++|... ....++|+|+||||+||||||++++++... . +| +.++|++++.. +...++..
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL---KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS---TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcc---cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 456999999999999999643 234789999999999999999999988654 4 78 58999999875 33333333
Q ss_pred ---HHHhccCC----CCCCCcHHHHHHHHHHHhCC--CcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchhh
Q 043647 254 ---ILESITFS----PNSLKDLNQIQVQLREAVAG--KRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTDV 324 (1096)
Q Consensus 254 ---i~~~l~~~----~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 324 (1096)
++..++.. .....+.+.+...++..+.+ +++||||||||+. ..++. + .+|++||||||+..+
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~~----l---~~~~~ilvTsR~~~~ 269 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLKA----F---DSQCQILLTTRDKSV 269 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHHT----T---CSSCEEEEEESCGGG
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHHH----h---cCCCeEEEECCCcHH
Confidence 34444421 12345667777888888765 7999999999864 33332 2 468999999999998
Q ss_pred hhhcCCcceeeC---CCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHHHHhccCCCHHHHHHH
Q 043647 325 ALTVGTAEYYNL---KLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGGLLRCKQSDDEWDEI 401 (1096)
Q Consensus 325 ~~~~~~~~~~~l---~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~ 401 (1096)
+..+. ...+.+ ++|+.+|+++||...++.. .....+.+.+|+++|+|+||||.++|+.++... ..|..+
T Consensus 270 ~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~ 341 (591)
T 1z6t_A 270 TDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYY 341 (591)
T ss_dssp GTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHH
T ss_pred HHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHH
Confidence 76543 233443 6899999999999998542 123356789999999999999999999998763 368777
Q ss_pred Hhhhccccc---------cCCChHHHHHHHHhcCchhhHHHhhhhcccCCCccccc-------------c---------c
Q 043647 402 LNSKIWYLS---------EESNILPVLRLSYHHLPSHLKRCFAYCAIFPKDYEFEE-------------M---------E 450 (1096)
Q Consensus 402 ~~~~~~~~~---------~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~~~~-------------~---------e 450 (1096)
++....... ....+..++..||+.||++.|.||+++|+||+++.+.. . .
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~ 421 (591)
T 1z6t_A 342 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNK 421 (591)
T ss_dssp HHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhC
Confidence 665432211 12368899999999999999999999999999887761 0 0
Q ss_pred cccccCC-CCcceEEehhHHHHHHHHhhc
Q 043647 451 SIFQPSS-NNSFKFIMHDLVNDLAQWISG 478 (1096)
Q Consensus 451 ~~~~~~~-~~~~~~~mhdlv~d~~~~~~~ 478 (1096)
++++... +....|.||+++|++++....
T Consensus 422 ~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 422 SLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp TSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred cCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 4554322 344589999999999998743
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=5.5e-30 Score=311.17 Aligned_cols=390 Identities=13% Similarity=0.111 Sum_probs=217.3
Q ss_pred ccccccccccccCCCCcEEeccCcccCcc------------------cCcccc--CCCCCceEEeccccccccCcccCCC
Q 043647 589 TMIRCLPESICSLCNLQFLILRGCYRLKK------------------LPSNLR--NLINLRHLVVTYVDLIREMPLGIKE 648 (1096)
Q Consensus 589 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~------------------lp~~i~--~l~~L~~L~l~~~~~~~~~p~~i~~ 648 (1096)
|.++.+|..++++++|++|+|++|. +.. +|..++ ++++|++|++++|.....+|..+++
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred CCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 4566688888899999999999864 665 888888 8999999999988877778888888
Q ss_pred CCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCCeEEEeeeCCCCCCc--
Q 043647 649 LKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKELTVKCYGGTVFPS-- 726 (1096)
Q Consensus 649 L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-- 726 (1096)
+++|++|....... +.. ..-......+..+..+++|+.|+++++....+|.
T Consensus 272 l~~L~~L~Ls~n~~-----l~~----------------------~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~ 324 (636)
T 4eco_A 272 LPEMQLINVACNRG-----ISG----------------------EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324 (636)
T ss_dssp CSSCCEEECTTCTT-----SCH----------------------HHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred CCCCCEEECcCCCC-----Ccc----------------------ccchHHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence 88888874311110 000 0000001111123445789999999998888888
Q ss_pred ccCCccccceeEEeecCCCCCCCCCCCCCcCCcceeecccccceeEecccccCCCCCCCCCC-CceecccCCCcCccccc
Q 043647 727 WMGDPLFSNIVLLRLEDCEKCTSLPSLGLLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQA-LETLCFEDLPEWEHWNS 805 (1096)
Q Consensus 727 ~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~ 805 (1096)
++.. +++|+.|++++|.....+|.++.+++|+.|+++++ .+..++..+ ..+++ |+.|++++..- ..+..
T Consensus 325 ~l~~--l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N-~l~~lp~~l------~~l~~~L~~L~Ls~N~l-~~lp~ 394 (636)
T 4eco_A 325 SLQK--MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN-QITEIPANF------CGFTEQVENLSFAHNKL-KYIPN 394 (636)
T ss_dssp HHTT--CTTCCEEECCSCCCEEECCCCEEEEEESEEECCSS-EEEECCTTS------EEECTTCCEEECCSSCC-SSCCS
T ss_pred hhcc--CCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCC-ccccccHhh------hhhcccCcEEEccCCcC-cccch
Confidence 6765 88999999999876557888888999999999875 344443222 12344 44444443321 11110
Q ss_pred CccCCcccccccccEEEEecCCCcCccCCCCCCCccEEEEecccCccccCCCCCCcceEEeccCCCccccCCCCcccccC
Q 043647 806 FKENDHVERFACLRQLSIVKCPRLCGRLPNHLPILEKLMIYECVQLVVSFSSLPLLCKLEIDRCKGVACRSPADLMSINS 885 (1096)
Q Consensus 806 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 885 (1096)
.- ....+++|+.|++++|.. .+..|..++.. .
T Consensus 395 ~~---~~~~l~~L~~L~Ls~N~l-~~~~p~~l~~~--------------------------------------------~ 426 (636)
T 4eco_A 395 IF---DAKSVSVMSAIDFSYNEI-GSVDGKNFDPL--------------------------------------------D 426 (636)
T ss_dssp CC---CTTCSSCEEEEECCSSCT-TTTTTCSSCTT--------------------------------------------C
T ss_pred hh---hhcccCccCEEECcCCcC-CCcchhhhccc--------------------------------------------c
Confidence 00 001122344444443321 11222211100 0
Q ss_pred CCCCCCCCccEEEEccCCCcccchhh-cCCCCCcCeEEEecCCCcCcCCCCCCC--------CCCcCeEEEeCCCCCccc
Q 043647 886 DSFKYFRALQQLEILDCPKLESIAER-FHNNTSLGCIWIWKCENLKSLPEGLPN--------LNSLHNIYVWDCPSLVSF 956 (1096)
Q Consensus 886 ~~l~~l~~L~~L~L~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~lp~~l~~--------l~~L~~L~l~~c~~l~~l 956 (1096)
.....+++|++|++++|. ++.+|.. +..+++|++|++++| .++.+|..... +++|+.|++++| .++.+
T Consensus 427 ~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l 503 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKL 503 (636)
T ss_dssp SSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBC
T ss_pred cccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCC-cCCcc
Confidence 000023345555555543 2344332 234555555555553 23344433221 125555555553 33344
Q ss_pred CCCC---CCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcC------CCCccccccccccCcCCCCcc
Q 043647 957 PEGG---LPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIG------CPDAVSFPEEEIGMTFPSSLT 1027 (1096)
Q Consensus 957 ~~~~---~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~------c~~l~~l~~~~~~~~~~~sL~ 1027 (1096)
|... -.++|+.|++++|. ++.+|. .+.++++|+.|++++ |.....+|..+ ..+++|+
T Consensus 504 p~~~~~~~l~~L~~L~Ls~N~-l~~ip~----------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l---~~l~~L~ 569 (636)
T 4eco_A 504 SDDFRATTLPYLVGIDLSYNS-FSKFPT----------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI---TLCPSLT 569 (636)
T ss_dssp CGGGSTTTCTTCCEEECCSSC-CSSCCC----------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG---GGCSSCC
T ss_pred ChhhhhccCCCcCEEECCCCC-CCCcCh----------hhhcCCCCCEEECCCCcccccCcccccChHHH---hcCCCCC
Confidence 4322 22555555555532 222332 555677777777744 33345566543 5577777
Q ss_pred EEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCCCCCc----------cccccceeeccCcchh
Q 043647 1028 ELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFPEAGL----------PSSLLELYINDYPLMT 1086 (1096)
Q Consensus 1028 ~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~l----------~~~L~~L~i~~c~~L~ 1086 (1096)
.|++++ +.++.+| ..+. ++|+.|++++| .+..++..++ ....+..+|.+||.|+
T Consensus 570 ~L~Ls~-N~l~~ip-~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 570 QLQIGS-NDIRKVN-EKIT--PNISVLDIKDN-PNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp EEECCS-SCCCBCC-SCCC--TTCCEEECCSC-TTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred EEECCC-CcCCccC-HhHh--CcCCEEECcCC-CCccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 787777 3467777 3333 67888888874 4455443322 1234566888998874
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.4e-29 Score=303.19 Aligned_cols=461 Identities=18% Similarity=0.143 Sum_probs=251.9
Q ss_pred hhhhcCCCCcceEEEecccccccC-CCCcCCCCccceeecccccccccc-cccccCCCCcEEeccCcccCcccCc-cccC
Q 043647 548 LSNLLPKFTKLRVLSLKKYYITEL-PHSIGDLKHLRYINLSETMIRCLP-ESICSLCNLQFLILRGCYRLKKLPS-NLRN 624 (1096)
Q Consensus 548 ~~~~~~~~~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~ 624 (1096)
.+..|..+++|++|++++|.++.+ |..|+++++|++|+|++|.++.+| ..++++++|++|++++| .+..+|. .+++
T Consensus 44 ~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~ 122 (570)
T 2z63_A 44 GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGH 122 (570)
T ss_dssp CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTT
T ss_pred ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCCccccc
Confidence 445678888999999999988877 466888999999999999888775 57888999999999885 6777765 5788
Q ss_pred CCCCceEEeccccccc-cCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhh
Q 043647 625 LINLRHLVVTYVDLIR-EMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLD 703 (1096)
Q Consensus 625 l~~L~~L~l~~~~~~~-~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~ 703 (1096)
+++|++|++++|.... .+|..++++++|++|+...... .......+..+.++.
T Consensus 123 l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~------------------------- 176 (570)
T 2z63_A 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMP------------------------- 176 (570)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC-CEECGGGGHHHHTCT-------------------------
T ss_pred cccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc-ceecHHHccchhccc-------------------------
Confidence 9999999998887322 3678888888888875321110 000001111111110
Q ss_pred ccCCCCCCCeEEEeeeCCCCCCcccCCccccceeEEeecCCCCCC-CCC-CCCCcCCcceeeccc-----ccceeEeccc
Q 043647 704 MLQPHRSLKELTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCT-SLP-SLGLLGSLKNLTIKG-----MRRLKSIGFE 776 (1096)
Q Consensus 704 ~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~-~l~-~l~~l~~L~~L~L~~-----~~~l~~~~~~ 776 (1096)
.....|+++++....++..... ..+|+.|++++|.... .++ .++.+++++.+.+.- ...+..++..
T Consensus 177 -----~~~~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~ 249 (570)
T 2z63_A 177 -----LLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249 (570)
T ss_dssp -----TCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTT
T ss_pred -----hhhhhcccCCCCceecCHHHhc--cCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchh
Confidence 0114566666655544433222 2367777777653211 111 223344444333321 0011111100
Q ss_pred ccCCCCCCCCCC--CceecccCCCcCcccccCccCCcccccccccEEEEecCCCcCccCCC---CCCCccEEEEecccCc
Q 043647 777 IYGEGCSKPFQA--LETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLPN---HLPILEKLMIYECVQL 851 (1096)
Q Consensus 777 ~~~~~~~~~~~~--L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l 851 (1096)
.+..+++ ++.+.+.++..+..... .....+++|+.|++++|. +. .+|. .+ +|+.|++.+|...
T Consensus 250 -----~~~~l~~l~l~~l~l~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~-l~-~l~~~~~~~-~L~~L~l~~n~~~ 317 (570)
T 2z63_A 250 -----ALEGLCNLTIEEFRLAYLDYYLDDII----DLFNCLTNVSSFSLVSVT-IE-RVKDFSYNF-GWQHLELVNCKFG 317 (570)
T ss_dssp -----TTGGGGGSEEEEEEEEETTEEESCST----TTTGGGTTCSEEEEESCE-EC-SCCBCCSCC-CCSEEEEESCBCS
T ss_pred -----hhccccccchhhhhhhcchhhhhhch----hhhcCcCcccEEEecCcc-ch-hhhhhhccC-CccEEeeccCccc
Confidence 0011111 22222222211111110 113455666666666653 22 3332 23 5666666666543
Q ss_pred cccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccc---hhhcCCCCCcCeEEEecCCC
Q 043647 852 VVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESI---AERFHNNTSLGCIWIWKCEN 928 (1096)
Q Consensus 852 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l---~~~~~~l~~L~~L~l~~c~~ 928 (1096)
......+++|+.|++++|..... .....+++|++|++++|. ++.+ +..+..+++|++|++++|.
T Consensus 318 ~l~~~~l~~L~~L~l~~n~~~~~-----------~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~- 384 (570)
T 2z63_A 318 QFPTLKLKSLKRLTFTSNKGGNA-----------FSEVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG- 384 (570)
T ss_dssp SCCBCBCSSCCEEEEESCBSCCB-----------CCCCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-
T ss_pred ccCcccccccCEEeCcCCccccc-----------cccccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc-
Confidence 22334566667777766643220 011456667777776665 2322 4455666677777776643
Q ss_pred cCcCCCCCCCCCCcCeEEEeCCCCCcccCCC--CCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcC
Q 043647 929 LKSLPEGLPNLNSLHNIYVWDCPSLVSFPEG--GLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIG 1006 (1096)
Q Consensus 929 l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~ 1006 (1096)
+..+|..+..+++|+.|++++|......+.. .-.++|+.|++++|......+ ..+.++++|++|++++
T Consensus 385 l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------~~~~~l~~L~~L~l~~ 454 (570)
T 2z63_A 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN----------GIFNGLSSLEVLKMAG 454 (570)
T ss_dssp EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT----------TTTTTCTTCCEEECTT
T ss_pred cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch----------hhhhcCCcCcEEECcC
Confidence 4444444666667777777664322222211 122566667766664333332 2456667777777777
Q ss_pred CCCcc--ccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCCCCCc--cccccceeeccC
Q 043647 1007 CPDAV--SFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFPEAGL--PSSLLELYINDY 1082 (1096)
Q Consensus 1007 c~~l~--~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~l--~~~L~~L~i~~c 1082 (1096)
| .+. .+|.. +..+++|+.|++++| .++.++...+.++++|++|++++ +.++.++...+ .++|+.|++++|
T Consensus 455 n-~l~~~~~p~~---~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 455 N-SFQENFLPDI---FTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMAS-NQLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp C-EEGGGEECSC---CTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred C-cCccccchhh---hhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCC-CcCCCCCHHHhhcccCCcEEEecCC
Confidence 7 333 35543 355667777777774 45555335666677777777776 35666655433 456777777665
Q ss_pred c
Q 043647 1083 P 1083 (1096)
Q Consensus 1083 ~ 1083 (1096)
|
T Consensus 529 ~ 529 (570)
T 2z63_A 529 P 529 (570)
T ss_dssp C
T ss_pred c
Confidence 4
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.4e-29 Score=311.28 Aligned_cols=291 Identities=15% Similarity=0.103 Sum_probs=169.3
Q ss_pred ccccccccccccCCCCcEEeccCcccCcc------------------cCcccc--CCCCCceEEeccccccccCcccCCC
Q 043647 589 TMIRCLPESICSLCNLQFLILRGCYRLKK------------------LPSNLR--NLINLRHLVVTYVDLIREMPLGIKE 648 (1096)
Q Consensus 589 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~------------------lp~~i~--~l~~L~~L~l~~~~~~~~~p~~i~~ 648 (1096)
|.++.+|..+++|++|++|+|++| .+.. +|..++ ++++|++|++++|.....+|..+++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred CcccchhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 566668888888888888888886 3555 787777 8888888888888766777777888
Q ss_pred CCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHh-hccCCCCCCCeEEEeeeCCCCCCc-
Q 043647 649 LKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVL-DMLQPHRSLKELTVKCYGGTVFPS- 726 (1096)
Q Consensus 649 L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~p~- 726 (1096)
+++|+.|....... +.. ..-......+ ..+..+++|+.|++++|....+|.
T Consensus 514 L~~L~~L~Ls~N~~-----lsg----------------------~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~ 566 (876)
T 4ecn_A 514 LPELQSLNIACNRG-----ISA----------------------AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566 (876)
T ss_dssp CSSCCEEECTTCTT-----SCH----------------------HHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred CCCCCEEECcCCCC-----ccc----------------------ccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence 87777774211100 000 0000000111 145566789999999998888888
Q ss_pred -ccCCccccceeEEeecCCCCCCCCCCCCCcCCcceeecccccceeEecccccCCCCCCCCCC-CceecccCCCcCcccc
Q 043647 727 -WMGDPLFSNIVLLRLEDCEKCTSLPSLGLLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQA-LETLCFEDLPEWEHWN 804 (1096)
Q Consensus 727 -~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~ 804 (1096)
++.. +++|+.|+|++|... .+|.++.+++|+.|+++++. +..++..+ ..+++ |+.|+++++. +..+.
T Consensus 567 ~~l~~--L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~-l~~lp~~l------~~l~~~L~~L~Ls~N~-L~~lp 635 (876)
T 4ecn_A 567 ASLQK--MVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQ-IEEIPEDF------CAFTDQVEGLGFSHNK-LKYIP 635 (876)
T ss_dssp HHHTT--CTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSC-CSCCCTTS------CEECTTCCEEECCSSC-CCSCC
T ss_pred hhhhc--CCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCc-cccchHHH------hhccccCCEEECcCCC-CCcCc
Confidence 6665 889999999998654 88888999999999998764 33443222 23566 7777776654 22221
Q ss_pred cCccCCcccc--cccccEEEEecCCCcCccCCCCCCCccEEEEecccCccccCC--CCCCcceEEeccCCCccccCCCCc
Q 043647 805 SFKENDHVER--FACLRQLSIVKCPRLCGRLPNHLPILEKLMIYECVQLVVSFS--SLPLLCKLEIDRCKGVACRSPADL 880 (1096)
Q Consensus 805 ~~~~~~~~~~--~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~ 880 (1096)
. .... .++|+.|++++|.- .+.+|. ++ ..+. .+++|+.|++++|....
T Consensus 636 ~-----~~~~~~~~~L~~L~Ls~N~l-~g~ip~-l~--------------~~l~~~~~~~L~~L~Ls~N~L~~------- 687 (876)
T 4ecn_A 636 N-----IFNAKSVYVMGSVDFSYNKI-GSEGRN-IS--------------CSMDDYKGINASTVTLSYNEIQK------- 687 (876)
T ss_dssp S-----CCCTTCSSCEEEEECCSSCT-TTTSSS-CS--------------SCTTTCCCCCEEEEECCSSCCCS-------
T ss_pred h-----hhhccccCCCCEEECcCCcC-CCcccc-ch--------------hhhccccCCCcCEEEccCCcCCc-------
Confidence 1 0222 23477777777532 222221 00 0011 12355555555553221
Q ss_pred ccccCCCCCCCCCccEEEEccCCCcccchhhcCC--------CCCcCeEEEecCCCcCcCCCCCC--CCCCcCeEEEeCC
Q 043647 881 MSINSDSFKYFRALQQLEILDCPKLESIAERFHN--------NTSLGCIWIWKCENLKSLPEGLP--NLNSLHNIYVWDC 950 (1096)
Q Consensus 881 ~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~--------l~~L~~L~l~~c~~l~~lp~~l~--~l~~L~~L~l~~c 950 (1096)
+....+..+++|+.|+|++|. +..+|..+.. +++|+.|++++| .+..+|..+. .+++|+.|+|++|
T Consensus 688 --lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N 763 (876)
T 4ecn_A 688 --FPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN 763 (876)
T ss_dssp --CCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS
T ss_pred --cCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC
Confidence 111112244556666666653 3344443322 225666666664 3445555554 5666666666653
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=3.9e-28 Score=305.46 Aligned_cols=469 Identities=17% Similarity=0.125 Sum_probs=316.4
Q ss_pred CCCcceEEEecccccccC-CCCcCCCCccceeeccccc-cccc-ccccccCCCCcEEeccCcccCcc-cCccccCCCCCc
Q 043647 554 KFTKLRVLSLKKYYITEL-PHSIGDLKHLRYINLSETM-IRCL-PESICSLCNLQFLILRGCYRLKK-LPSNLRNLINLR 629 (1096)
Q Consensus 554 ~~~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~-i~~l-p~~i~~L~~L~~L~L~~~~~l~~-lp~~i~~l~~L~ 629 (1096)
-.++|++|+|++|.++.+ |..|.++.+|++|+|++|. +..+ |..+.++++|++|+|++|. +.. .|..++++++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccC
Confidence 457899999999999877 7889999999999999984 5566 7789999999999999974 555 478899999999
Q ss_pred eEEeccccccccCccc--CCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCC
Q 043647 630 HLVVTYVDLIREMPLG--IKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQP 707 (1096)
Q Consensus 630 ~L~l~~~~~~~~~p~~--i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~ 707 (1096)
+|++++|.....+|.. ++++++|++|+...... .. + .....+..
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l------~~------~----------------------~~~~~~~~ 146 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI------RS------L----------------------YLHPSFGK 146 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCC------CC------C----------------------CCCGGGGT
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcc------cc------c----------------------ccchhHhh
Confidence 9999999844445554 88888888885322110 00 0 01134678
Q ss_pred CCCCCeEEEeeeCCCCC-CcccCCccccceeEEeecCCCCCCCCC-CCCCcCC------cceeecccccceeEecccccC
Q 043647 708 HRSLKELTVKCYGGTVF-PSWMGDPLFSNIVLLRLEDCEKCTSLP-SLGLLGS------LKNLTIKGMRRLKSIGFEIYG 779 (1096)
Q Consensus 708 ~~~L~~L~l~~~~~~~~-p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~------L~~L~L~~~~~l~~~~~~~~~ 779 (1096)
+++|+.|++++|..... |..+.....++|+.|++++|......| .++.+++ |+.|+++++..-......+..
T Consensus 147 L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 226 (844)
T 3j0a_A 147 LNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226 (844)
T ss_dssp CSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGG
T ss_pred CCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHh
Confidence 89999999999876553 344332112789999999997666554 4555554 999999886322222222211
Q ss_pred CCCCCCCCCCceecccCCCcCcccccCc----cCCccc--ccccccEEEEecCCCcCccCC---CCCCCccEEEEecccC
Q 043647 780 EGCSKPFQALETLCFEDLPEWEHWNSFK----ENDHVE--RFACLRQLSIVKCPRLCGRLP---NHLPILEKLMIYECVQ 850 (1096)
Q Consensus 780 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~~~~~--~~~~L~~L~l~~c~~l~~~~p---~~l~~L~~L~l~~~~~ 850 (1096)
. ....+++.|.+.....-..+.... ....+. ..++|+.|++++|.. .+..| ..+++|+.|++.++..
T Consensus 227 ~---l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~i 302 (844)
T 3j0a_A 227 A---ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV-FSLNSRVFETLKDLKVLNLAYNKI 302 (844)
T ss_dssp T---SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC-CEECSCCSSSCCCCCEEEEESCCC
T ss_pred h---cCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcc-cccChhhhhcCCCCCEEECCCCcC
Confidence 1 113456666655211100000000 000011 247899999998753 32333 4578999999998764
Q ss_pred c---cccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccc-hhhcCCCCCcCeEEEecC
Q 043647 851 L---VVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESI-AERFHNNTSLGCIWIWKC 926 (1096)
Q Consensus 851 l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l-~~~~~~l~~L~~L~l~~c 926 (1096)
. ...+..+++|+.|++++|... ......+..+++|+.|++++|. +..+ +..+..+++|++|++++|
T Consensus 303 ~~~~~~~~~~l~~L~~L~Ls~N~l~---------~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 303 NKIADEAFYGLDNLQVLNLSYNLLG---------ELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp CEECTTTTTTCSSCCEEEEESCCCS---------CCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETC
T ss_pred CCCChHHhcCCCCCCEEECCCCCCC---------ccCHHHhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCC
Confidence 2 235778999999999999633 3345567889999999999996 5555 446788999999999996
Q ss_pred CCcCcCCCCCCCCCCcCeEEEeCCCCCcccCCCCCCCCcCeEEEccCcCCcCCC---------CC-------CCCCC-CC
Q 043647 927 ENLKSLPEGLPNLNSLHNIYVWDCPSLVSFPEGGLPNCSLSVTIGKCEKLKALP---------NL-------NAYES-PI 989 (1096)
Q Consensus 927 ~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~---------~l-------~~~~~-~~ 989 (1096)
.++.++ .+++|+.|++++| .++.+|.. ..+++.|+++++. ++.++ .+ +.+.. ..
T Consensus 373 -~l~~i~----~~~~L~~L~l~~N-~l~~l~~~--~~~l~~L~ls~N~-l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 443 (844)
T 3j0a_A 373 -ALTTIH----FIPSIPDIFLSGN-KLVTLPKI--NLTANLIHLSENR-LENLDILYFLLRVPHLQILILNQNRFSSCSG 443 (844)
T ss_dssp -CSCCCS----SCCSCSEEEEESC-CCCCCCCC--CTTCCEEECCSCC-CCSSTTHHHHTTCTTCCEEEEESCCCCCCCS
T ss_pred -CCCccc----CCCCcchhccCCC-Cccccccc--ccccceeecccCc-cccCchhhhhhcCCccceeeCCCCccccccc
Confidence 455554 3788999999984 45566542 2344444444321 11110 00 00000 00
Q ss_pred cccCCCCCCcceEEEcCCCCcccccccc---ccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCC
Q 043647 990 DWGLHKLTSLKILCVIGCPDAVSFPEEE---IGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFP 1066 (1096)
Q Consensus 990 ~~~l~~l~~L~~L~l~~c~~l~~l~~~~---~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~ 1066 (1096)
...+..+++|+.|++++| .+..++... ..+..+++|+.|++++ ++++.++...+.++++|+.|++++ ++++.+|
T Consensus 444 ~~~~~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~ 520 (844)
T 3j0a_A 444 DQTPSENPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNH-NYLNSLPPGVFSHLTALRGLSLNS-NRLTVLS 520 (844)
T ss_dssp SSSSCSCTTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCCCH-HHHTTCCTTSSSSCCSCSEEEEES-CCCSSCC
T ss_pred ccccccCCccccccCCCC-ccccccccccchhhhcCcccccEEECCC-CcccccChhHccchhhhheeECCC-CCCCccC
Confidence 113455788888888888 554333211 1246678999999999 468888877889999999999999 6899999
Q ss_pred CCCccccccceeeccCc
Q 043647 1067 EAGLPSSLLELYINDYP 1083 (1096)
Q Consensus 1067 ~~~l~~~L~~L~i~~c~ 1083 (1096)
...++++|+.|++++|.
T Consensus 521 ~~~~~~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 521 HNDLPANLEILDISRNQ 537 (844)
T ss_dssp CCCCCSCCCEEEEEEEC
T ss_pred hhhhhccccEEECCCCc
Confidence 98888999999999885
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=8.5e-28 Score=289.20 Aligned_cols=430 Identities=17% Similarity=0.162 Sum_probs=256.6
Q ss_pred CcceEEEecccccccC-CCCcCCCCccceeecccccccccc-cccccCCCCcEEeccCcccCcccCcc-ccCCCCCceEE
Q 043647 556 TKLRVLSLKKYYITEL-PHSIGDLKHLRYINLSETMIRCLP-ESICSLCNLQFLILRGCYRLKKLPSN-LRNLINLRHLV 632 (1096)
Q Consensus 556 ~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~ 632 (1096)
+.|++|++++|.++.+ |..|.++++|++|++++|.++.+| ..++++++|++|++++| .+..+|.. ++++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEE
Confidence 5677777777777765 566777777777777777777664 46777777777777775 45555544 67777777777
Q ss_pred ecccccccc--CcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCC
Q 043647 633 VTYVDLIRE--MPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRS 710 (1096)
Q Consensus 633 l~~~~~~~~--~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~ 710 (1096)
+++|. +.. .|..++ .+++
T Consensus 105 Ls~n~-l~~~~~~~~~~-----------------------------------------------------------~l~~ 124 (549)
T 2z81_A 105 LMGNP-YQTLGVTSLFP-----------------------------------------------------------NLTN 124 (549)
T ss_dssp CTTCC-CSSSCSSCSCT-----------------------------------------------------------TCTT
T ss_pred CCCCc-ccccchhhhhh-----------------------------------------------------------ccCC
Confidence 77775 332 222233 3445
Q ss_pred CCeEEEeeeC-CCCCC-cccCCccccceeEEeecCCCCCCCCC-CCCCcCCcceeecccccceeEecccccCCCCCCCCC
Q 043647 711 LKELTVKCYG-GTVFP-SWMGDPLFSNIVLLRLEDCEKCTSLP-SLGLLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQ 787 (1096)
Q Consensus 711 L~~L~l~~~~-~~~~p-~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 787 (1096)
|+.|+++++. ...+| ..+.. +++|+.|++++|......| .++.+++|+.|++.++. +..++..+. ..++
T Consensus 125 L~~L~L~~n~~~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~-----~~l~ 196 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRRIDFAG--LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFA-----DILS 196 (549)
T ss_dssp CCEEEEEESSSCCEECTTTTTT--CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHH-----HSTT
T ss_pred ccEEECCCCccccccCHhhhhc--ccccCeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhH-----hhcc
Confidence 6666666665 34444 34443 8999999999997665555 68899999999998753 222222221 2378
Q ss_pred CCceecccCCCcCcccccCccCCcccccccccEEEEecCCCcCc-------cCCCCCCCccEEEEecccCcc--------
Q 043647 788 ALETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCG-------RLPNHLPILEKLMIYECVQLV-------- 852 (1096)
Q Consensus 788 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-------~~p~~l~~L~~L~l~~~~~l~-------- 852 (1096)
+|+.|+++++.-- ...... ......+++|+.|++.++. +.+ .....+++|+.+.+.+|....
T Consensus 197 ~L~~L~L~~n~l~-~~~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 273 (549)
T 2z81_A 197 SVRYLELRDTNLA-RFQFSP-LPVDEVSSPMKKLAFRGSV-LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273 (549)
T ss_dssp TBSEEEEESCBCT-TCCCCC-CSSCCCCCCCCEEEEESCE-EEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCT
T ss_pred cccEEEccCCccc-cccccc-cchhhhhhcccceeccccc-cchhHHHHHHHHhhhhccccccccccccccccccccccc
Confidence 9999999875422 211000 0113457899999999864 221 112457889999999875321
Q ss_pred -ccCCCCCCcceEEeccCCCccccCCCC--------------------cccccCCCCCCCCCccEEEEccCCCcccchh-
Q 043647 853 -VSFSSLPLLCKLEIDRCKGVACRSPAD--------------------LMSINSDSFKYFRALQQLEILDCPKLESIAE- 910 (1096)
Q Consensus 853 -~~~~~l~~L~~L~l~~~~~~~~~~~~~--------------------~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~- 910 (1096)
..+..+++|+.|++.++.......... +..++...+..+++|++|++++|.....++.
T Consensus 274 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 353 (549)
T 2z81_A 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353 (549)
T ss_dssp TTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHH
T ss_pred hhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccc
Confidence 123456777777777764322110000 0000001112345555555555543333321
Q ss_pred --hcCCCCCcCeEEEecCCCcCcCC---CCCCCCCCcCeEEEeCCCCCcccCCC-CCCCCcCeEEEccCcCCcCCCCCCC
Q 043647 911 --RFHNNTSLGCIWIWKCENLKSLP---EGLPNLNSLHNIYVWDCPSLVSFPEG-GLPNCSLSVTIGKCEKLKALPNLNA 984 (1096)
Q Consensus 911 --~~~~l~~L~~L~l~~c~~l~~lp---~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~l~~l~~ 984 (1096)
.+..+++|++|++++| .++.+| ..+..+++|++|++++| .++.+|.. ...++|+.|++++|. ++.++.
T Consensus 354 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~--- 427 (549)
T 2z81_A 354 SACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTG-IRVVKT--- 427 (549)
T ss_dssp HTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSC-CSCCCT---
T ss_pred hhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCC-cccccc---
Confidence 2344555555555553 333332 12445555555555553 34444432 223555555555543 333321
Q ss_pred CCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCC
Q 043647 985 YESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTS 1064 (1096)
Q Consensus 985 ~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~ 1064 (1096)
.+ .++|++|++++| .+..++ ..+++|++|++++ ++++.+|. ...+++|+.|++++ +.++.
T Consensus 428 -------~~--~~~L~~L~Ls~N-~l~~~~------~~l~~L~~L~Ls~-N~l~~ip~--~~~l~~L~~L~Ls~-N~l~~ 487 (549)
T 2z81_A 428 -------CI--PQTLEVLDVSNN-NLDSFS------LFLPRLQELYISR-NKLKTLPD--ASLFPVLLVMKISR-NQLKS 487 (549)
T ss_dssp -------TS--CTTCSEEECCSS-CCSCCC------CCCTTCCEEECCS-SCCSSCCC--GGGCTTCCEEECCS-SCCCC
T ss_pred -------hh--cCCceEEECCCC-Chhhhc------ccCChhcEEECCC-CccCcCCC--cccCccCCEEecCC-CccCC
Confidence 11 246666777766 555544 3577899999998 46888873 45688999999998 57788
Q ss_pred CCCCCc--cccccceeeccCc
Q 043647 1065 FPEAGL--PSSLLELYINDYP 1083 (1096)
Q Consensus 1065 l~~~~l--~~~L~~L~i~~c~ 1083 (1096)
+++..+ .++|+.|++++||
T Consensus 488 ~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 488 VPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCTTGGGGCTTCCEEECCSSC
T ss_pred cCHHHHhcCcccCEEEecCCC
Confidence 776543 5689999998876
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=5.2e-28 Score=297.46 Aligned_cols=432 Identities=15% Similarity=0.107 Sum_probs=282.8
Q ss_pred CcceEEEecccccc-cCCCCcCCCCccceeec-cccccccc-ccc-----------------------------------
Q 043647 556 TKLRVLSLKKYYIT-ELPHSIGDLKHLRYINL-SETMIRCL-PES----------------------------------- 597 (1096)
Q Consensus 556 ~~Lr~L~L~~~~~~-~lp~~i~~l~~Lr~L~L-~~~~i~~l-p~~----------------------------------- 597 (1096)
.++..|+|+++.+. .+|..|++|++|++|+| ++|.+... |-.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57889999999987 67999999999999999 77654311 100
Q ss_pred --------------c--ccCCCCcEEeccC-cccCcccCccccCCCCCceEEecccccccc------------------C
Q 043647 598 --------------I--CSLCNLQFLILRG-CYRLKKLPSNLRNLINLRHLVVTYVDLIRE------------------M 642 (1096)
Q Consensus 598 --------------i--~~L~~L~~L~L~~-~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~------------------~ 642 (1096)
+ .....++.+.+.. ++.+..+|..++++++|++|++++|. +.. +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccC
Confidence 0 1122233333333 23566699999999999999999998 555 8
Q ss_pred cccCC--CCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCCeEEEeeeC
Q 043647 643 PLGIK--ELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKELTVKCYG 720 (1096)
Q Consensus 643 p~~i~--~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 720 (1096)
|..++ ++++|+.|......... .....+..+++|+.|++++|.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~-----------------------------------~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMT-----------------------------------QLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCC-----------------------------------SCCGGGGGCSSCCEEECTTCT
T ss_pred ChhhhhccCCCCCEEECcCCCCCc-----------------------------------cChHHHhCCCCCCEEECcCCC
Confidence 88887 88888887532211000 112334556778888888776
Q ss_pred -CCC--CCcccCC-----ccccceeEEeecCCCCCCCCCC---CCCcCCcceeecccccceeEecccccCCCCCCCCCCC
Q 043647 721 -GTV--FPSWMGD-----PLFSNIVLLRLEDCEKCTSLPS---LGLLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQAL 789 (1096)
Q Consensus 721 -~~~--~p~~~~~-----~~~~~L~~L~L~~~~~~~~l~~---l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L 789 (1096)
... +|..+.. ..+++|+.|+|++|... .+|. ++.+++|+.|+++++. +..++ . +..+++|
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~------~~~L~~L 597 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK-VRHLE-A------FGTNVKL 597 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC-CCBCC-C------CCTTSEE
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC-cccch-h------hcCCCcc
Confidence 543 5554332 12458888888888654 6775 7788888888887753 33333 1 1235566
Q ss_pred ceecccCCCcCcccccCccCCccccccc-ccEEEEecCCCcCccCCCCCCCccEEEEecccCccccCCC--CCCcceEEe
Q 043647 790 ETLCFEDLPEWEHWNSFKENDHVERFAC-LRQLSIVKCPRLCGRLPNHLPILEKLMIYECVQLVVSFSS--LPLLCKLEI 866 (1096)
Q Consensus 790 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~--l~~L~~L~l 866 (1096)
+.|.++++.-- .+. .....+++ |+.|++++|. +. .+|. .+.. .++|+.|++
T Consensus 598 ~~L~Ls~N~l~-~lp-----~~l~~l~~~L~~L~Ls~N~-L~-~lp~------------------~~~~~~~~~L~~L~L 651 (876)
T 4ecn_A 598 TDLKLDYNQIE-EIP-----EDFCAFTDQVEGLGFSHNK-LK-YIPN------------------IFNAKSVYVMGSVDF 651 (876)
T ss_dssp SEEECCSSCCS-CCC-----TTSCEECTTCCEEECCSSC-CC-SCCS------------------CCCTTCSSCEEEEEC
T ss_pred eEEECcCCccc-cch-----HHHhhccccCCEEECcCCC-CC-cCch------------------hhhccccCCCCEEEC
Confidence 66666554321 111 11344555 6666666543 22 3332 2333 345999999
Q ss_pred ccCCCccccCCCCcccccCCCCC--CCCCccEEEEccCCCcccchhhc-CCCCCcCeEEEecCCCcCcCCCCCCC-----
Q 043647 867 DRCKGVACRSPADLMSINSDSFK--YFRALQQLEILDCPKLESIAERF-HNNTSLGCIWIWKCENLKSLPEGLPN----- 938 (1096)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~l~--~l~~L~~L~L~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~lp~~l~~----- 938 (1096)
++|......+ .+. ..+. ..++|+.|++++|. +..+|..+ ..+++|+.|++++| .+..+|..+..
T Consensus 652 s~N~l~g~ip-----~l~-~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 652 SYNKIGSEGR-----NIS-CSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGN 723 (876)
T ss_dssp CSSCTTTTSS-----SCS-SCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSC
T ss_pred cCCcCCCccc-----cch-hhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCC-cCCccChHHhcccccc
Confidence 9997543110 001 1112 34589999999987 55777655 58999999999996 56688875543
Q ss_pred ---CCCcCeEEEeCCCCCcccCCCC---CCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcC------
Q 043647 939 ---LNSLHNIYVWDCPSLVSFPEGG---LPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIG------ 1006 (1096)
Q Consensus 939 ---l~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~------ 1006 (1096)
+++|+.|+|++| .++.+|... -.++|+.|++++| .++.+|. .+.++++|+.|+|++
T Consensus 724 l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~----------~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPT----------QPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp CTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCC----------GGGGCTTCCEEECCCCBCTTC
T ss_pred ccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccch----------hhhcCCCCCEEECCCCCCccc
Confidence 349999999996 566888543 3489999999986 4444553 677899999999987
Q ss_pred CCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCCCCCccc----------cccc
Q 043647 1007 CPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFPEAGLPS----------SLLE 1076 (1096)
Q Consensus 1007 c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~l~~----------~L~~ 1076 (1096)
|.....+|..+ ..+++|+.|++++| .++.||. .+. ++|+.|+|++|+ +.++....+.+ .-+.
T Consensus 792 N~l~~~ip~~l---~~L~~L~~L~Ls~N-~L~~Ip~-~l~--~~L~~LdLs~N~-l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 792 NRILRQWPTGI---TTCPSLIQLQIGSN-DIRKVDE-KLT--PQLYILDIADNP-NISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp CBCCCCCCTTG---GGCSSCCEEECCSS-CCCBCCS-CCC--SSSCEEECCSCT-TCEEECGGGHHHHHTTCCEEECCTT
T ss_pred ccccccChHHH---hcCCCCCEEECCCC-CCCccCH-hhc--CCCCEEECCCCC-CCccChHHccccccchheeecCCCc
Confidence 43355667653 67899999999995 5799984 444 699999999954 56655433321 2234
Q ss_pred eeeccCcchh
Q 043647 1077 LYINDYPLMT 1086 (1096)
Q Consensus 1077 L~i~~c~~L~ 1086 (1096)
.+|.+||.|.
T Consensus 864 ~~I~gC~~L~ 873 (876)
T 4ecn_A 864 QDIRGCDALG 873 (876)
T ss_dssp SEEESCGGGC
T ss_pred cccCCCCCcc
Confidence 5788998763
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=3e-27 Score=282.09 Aligned_cols=423 Identities=16% Similarity=0.139 Sum_probs=226.3
Q ss_pred CcceEEEecccccccCC-CCcCCCCccceeeccccccccc-ccccccCCCCcEEeccCcccCcccCccccCCCCCceEEe
Q 043647 556 TKLRVLSLKKYYITELP-HSIGDLKHLRYINLSETMIRCL-PESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLVV 633 (1096)
Q Consensus 556 ~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l 633 (1096)
++|++|++++|.++.++ ..|.++++|++|+|++|.++.+ |..++++++|++|+|++| .+..+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccEEec
Confidence 78999999999988875 6788899999999999998877 678899999999999986 67788876 8899999999
Q ss_pred ccccccc-cCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCC-
Q 043647 634 TYVDLIR-EMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSL- 711 (1096)
Q Consensus 634 ~~~~~~~-~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L- 711 (1096)
++|.... .+|..++++++|++|+....... . ..+..+++|
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~-~-------------------------------------~~~~~l~~L~ 139 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLE-K-------------------------------------SSVLPIAHLN 139 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCC-G-------------------------------------GGGGGGTTSC
T ss_pred cCCccccccchhhhccCCcceEEEecCcccc-h-------------------------------------hhccccccce
Confidence 9888333 35678888888888854322110 0 112223444
Q ss_pred -CeEEEeeeCC---CCCCcccCCcccc-ceeEEeecCCCCCCCCC--CCCCcCCcceeecccccc---eeEecccccCCC
Q 043647 712 -KELTVKCYGG---TVFPSWMGDPLFS-NIVLLRLEDCEKCTSLP--SLGLLGSLKNLTIKGMRR---LKSIGFEIYGEG 781 (1096)
Q Consensus 712 -~~L~l~~~~~---~~~p~~~~~~~~~-~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~---l~~~~~~~~~~~ 781 (1096)
+.|+++++.. ...|.++.. +. ....+++++|.....++ .+..+++|+.|+++++.. ...+.... .
T Consensus 140 L~~L~l~~n~l~~~~~~~~~l~~--l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~---~ 214 (520)
T 2z7x_B 140 ISKVLLVLGETYGEKEDPEGLQD--FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL---A 214 (520)
T ss_dssp EEEEEEEECTTTTSSCCTTTTTT--CCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH---H
T ss_pred eeEEEeecccccccccccccccc--cccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch---h
Confidence 8888888765 334554433 22 34456677776655555 466788888888876531 00000000 0
Q ss_pred CCCCCCCCceecccCCCcCcccccCccCCcccccccccEEEEecCCCcCccCCCCC-----C---CccEEEEecccCccc
Q 043647 782 CSKPFQALETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLPNHL-----P---ILEKLMIYECVQLVV 853 (1096)
Q Consensus 782 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l-----~---~L~~L~l~~~~~l~~ 853 (1096)
.+..+++|+.|.+.++.--.... ... ......++|+.|++++|. +.+.+|..+ . +|+.+++.++..
T Consensus 215 ~l~~l~~L~~L~l~~~~l~~~~~-~~~-~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--- 288 (520)
T 2z7x_B 215 KLQTNPKLSNLTLNNIETTWNSF-IRI-LQLVWHTTVWYFSISNVK-LQGQLDFRDFDYSGTSLKALSIHQVVSDVF--- 288 (520)
T ss_dssp GGGGCTTCCEEEEEEEEEEHHHH-HHH-HHHHHTSSCSEEEEEEEE-EESCCCCCCCCCCSCCCCEEEEEEEEECCC---
T ss_pred hhccccchhhccccccccCHHHH-HHH-HHHhhhCcccEEEeeccc-ccCccccchhhcccccCceeEeccccccce---
Confidence 12336677777765532110000 000 000123477777777763 233455433 3 333333333321
Q ss_pred cCC-----C---CCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEec
Q 043647 854 SFS-----S---LPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWK 925 (1096)
Q Consensus 854 ~~~-----~---l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~ 925 (1096)
.++ . -++|+.|++++|.... ...+..+++|++|++++|.....+|..+..+++|++|++++
T Consensus 289 ~~p~~~~~~~~~~~~L~~L~l~~n~l~~-----------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 357 (520)
T 2z7x_B 289 GFPQSYIYEIFSNMNIKNFTVSGTRMVH-----------MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357 (520)
T ss_dssp CSCTHHHHHHHHTCCCSEEEEESSCCCC-----------CCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCS
T ss_pred ecchhhhhcccccCceeEEEcCCCcccc-----------ccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccC
Confidence 111 0 1346666666654221 01113455666666666554333455555666666666666
Q ss_pred CCCcC--cCCCCCCCCCCcCeEEEeCCCCCcccCCCC--CCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcce
Q 043647 926 CENLK--SLPEGLPNLNSLHNIYVWDCPSLVSFPEGG--LPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKI 1001 (1096)
Q Consensus 926 c~~l~--~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~ 1001 (1096)
|.... .+|..+..+++|+.|++++|.....+|... ..++|+.|++++|.-...++. .+. ++|+.
T Consensus 358 N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~----------~l~--~~L~~ 425 (520)
T 2z7x_B 358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR----------CLP--PRIKV 425 (520)
T ss_dssp SCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG----------SCC--TTCCE
T ss_pred CccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhh----------hhc--ccCCE
Confidence 43221 233345556666666666543222244321 124444444444332221110 110 34444
Q ss_pred EEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeecc
Q 043647 1002 LCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRD 1058 (1096)
Q Consensus 1002 L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~ 1058 (1096)
|++++| .+..+|... ..+++|+.|++++ ++++.+|...+..+++|++|++++
T Consensus 426 L~Ls~N-~l~~ip~~~---~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 426 LDLHSN-KIKSIPKQV---VKLEALQELNVAS-NQLKSVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp EECCSS-CCCCCCGGG---GGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCC-cccccchhh---hcCCCCCEEECCC-CcCCccCHHHhccCCcccEEECcC
Confidence 555444 444444432 2344444454444 234444432344444444444444
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=6.5e-28 Score=291.91 Aligned_cols=491 Identities=15% Similarity=0.097 Sum_probs=297.6
Q ss_pred cCCcceeeeeeecccCCcccccccccCcCceeecccchhhhhhhhccchhhhhhhhcCCCCcceEEEecccccccCC-CC
Q 043647 496 RFRRARHSSYTCGFYDGKSKFEVFHEVEHLRTFLPVLSYEIRLLTRYITDVVLSNLLPKFTKLRVLSLKKYYITELP-HS 574 (1096)
Q Consensus 496 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~lp-~~ 574 (1096)
.+...+++.+......... ...|..+++|+.+.... +....+.+..|.++++|++|++++|.++.+| ..
T Consensus 26 l~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~---------n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSR---------CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (570)
T ss_dssp SCSSCCEEECCSCCCCEEC-TTTTTTCSSCCEEECTT---------CCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred ccccccEEEccCCccCccC-hhHhhCCCCceEEECCC---------CcCCccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence 4556777777655433221 23567788898887655 1123345667899999999999999999885 78
Q ss_pred cCCCCccceeeccccccccccc-ccccCCCCcEEeccCcccCcc--cCccccCCCCCceEEeccccccccCcccCCCCCC
Q 043647 575 IGDLKHLRYINLSETMIRCLPE-SICSLCNLQFLILRGCYRLKK--LPSNLRNLINLRHLVVTYVDLIREMPLGIKELKC 651 (1096)
Q Consensus 575 i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~ 651 (1096)
|+++.+|++|++++|.++.+|. .++++++|++|++++| .+.. +|..++++++|++|++++|......|..++.+++
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 174 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHT
T ss_pred hcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCccceecHHHccchhc
Confidence 9999999999999999999976 7999999999999997 4554 7999999999999999999843333456777777
Q ss_pred CCcCC-ceEecccC--CCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCCeEEEeeeCCC------
Q 043647 652 LQMLS-NFIVGMVT--GSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKELTVKCYGGT------ 722 (1096)
Q Consensus 652 L~~L~-~~~~~~~~--~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------ 722 (1096)
|+.+. ........ ......+... .|+ .+.+.+- . .... .....+..+.+++.+.+......
T Consensus 175 L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~-~L~l~~n--~--~~~~----~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 244 (570)
T 2z63_A 175 MPLLNLSLDLSLNPMNFIQPGAFKEI-RLH-KLTLRNN--F--DSLN----VMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244 (570)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTC-EEE-EEEEESC--C--SCTT----HHHHHHHTTTTCEEEEEEEEECCCCSSCE
T ss_pred cchhhhhcccCCCCceecCHHHhccC-cce-eEecccc--c--cccc----chhhhhcCccccceeeeccccccCchhhh
Confidence 73221 11111110 0000011111 122 2222210 0 0001 11223344555655555432211
Q ss_pred CCCcccCCc-cccceeEEeecCCCC-CCCCC-CCCCcCCcceeecccccceeEecccccCCCCCCCCCCCceecccCCCc
Q 043647 723 VFPSWMGDP-LFSNIVLLRLEDCEK-CTSLP-SLGLLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQALETLCFEDLPE 799 (1096)
Q Consensus 723 ~~p~~~~~~-~~~~L~~L~L~~~~~-~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 799 (1096)
.++.+.... .--.++.++++++.. ....| .++.+++|+.|++.++. +..++..+ ..+ +|+.|.+.++..
T Consensus 245 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~~~------~~~-~L~~L~l~~n~~ 316 (570)
T 2z63_A 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFS------YNF-GWQHLELVNCKF 316 (570)
T ss_dssp ECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECSCCBCC------SCC-CCSEEEEESCBC
T ss_pred hcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chhhhhhh------ccC-CccEEeeccCcc
Confidence 112111110 012466777777633 23333 57889999999998763 33332211 112 455555544321
Q ss_pred CcccccCccCCcccccccccEEEEecCCCcCccCCCCCCCccEEEEecccCccccCCCCCCcceEEeccCCCccccCCCC
Q 043647 800 WEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLPNHLPILEKLMIYECVQLVVSFSSLPLLCKLEIDRCKGVACRSPAD 879 (1096)
Q Consensus 800 l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 879 (1096)
- .+. ...+++|+.|++.+|.... .. ....+++|++|++++|......
T Consensus 317 ~-~l~-------~~~l~~L~~L~l~~n~~~~-~~--------------------~~~~~~~L~~L~l~~n~l~~~~---- 363 (570)
T 2z63_A 317 G-QFP-------TLKLKSLKRLTFTSNKGGN-AF--------------------SEVDLPSLEFLDLSRNGLSFKG---- 363 (570)
T ss_dssp S-SCC-------BCBCSSCCEEEEESCBSCC-BC--------------------CCCBCTTCCEEECCSSCCBEEE----
T ss_pred c-ccC-------cccccccCEEeCcCCcccc-cc--------------------ccccCCCCCEEeCcCCccCccc----
Confidence 1 110 1234445555555443221 11 1244667777777776432210
Q ss_pred cccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCC-CCCCCCCCcCeEEEeCCCCCcccCC
Q 043647 880 LMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLP-EGLPNLNSLHNIYVWDCPSLVSFPE 958 (1096)
Q Consensus 880 ~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~ 958 (1096)
.....+..+++|++|++++|. +..++..+..+++|++|++++|......| ..+..+++|++|++++|......|.
T Consensus 364 ---~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 439 (570)
T 2z63_A 364 ---CCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439 (570)
T ss_dssp ---EEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred ---cccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh
Confidence 001234456777888887775 44555557777888888888764333333 3567778888888887654333332
Q ss_pred C-CCCCCcCeEEEccCcCC-cCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCcccc-ccccccCcCCCCccEEEeccCC
Q 043647 959 G-GLPNCSLSVTIGKCEKL-KALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSF-PEEEIGMTFPSSLTELVIVRFP 1035 (1096)
Q Consensus 959 ~-~~~~~L~~L~l~~c~~l-~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l-~~~~~~~~~~~sL~~L~l~~c~ 1035 (1096)
. .-.++|+.|++++|... ..+| ..+..+++|++|++++| .+..+ |.. +..+++|+.|++++|
T Consensus 440 ~~~~l~~L~~L~l~~n~l~~~~~p----------~~~~~l~~L~~L~l~~n-~l~~~~~~~---~~~l~~L~~L~l~~n- 504 (570)
T 2z63_A 440 IFNGLSSLEVLKMAGNSFQENFLP----------DIFTELRNLTFLDLSQC-QLEQLSPTA---FNSLSSLQVLNMASN- 504 (570)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEEC----------SCCTTCTTCCEEECTTS-CCCEECTTT---TTTCTTCCEEECCSS-
T ss_pred hhhcCCcCcEEECcCCcCccccch----------hhhhcccCCCEEECCCC-ccccCChhh---hhcccCCCEEeCCCC-
Confidence 1 12367888888877533 2333 26888999999999999 66666 443 467899999999995
Q ss_pred CCcccCcCCCCCCCCcCeEeeccCCCCCCCCC
Q 043647 1036 KLKYLSSNGFRNLAFLEYLQIRDCPKLTSFPE 1067 (1096)
Q Consensus 1036 ~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~ 1067 (1096)
+++.++...+.++++|+.|++++|+.-.+.|.
T Consensus 505 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 505 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 68888877889999999999999765545543
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=1.5e-28 Score=298.51 Aligned_cols=395 Identities=17% Similarity=0.160 Sum_probs=248.7
Q ss_pred ccccCCCCcCCCCccceeecccccccc------------------cccccc--cCCCCcEEeccCcccCcccCccccCCC
Q 043647 567 YITELPHSIGDLKHLRYINLSETMIRC------------------LPESIC--SLCNLQFLILRGCYRLKKLPSNLRNLI 626 (1096)
Q Consensus 567 ~~~~lp~~i~~l~~Lr~L~L~~~~i~~------------------lp~~i~--~L~~L~~L~L~~~~~l~~lp~~i~~l~ 626 (1096)
.++.+|..++++++|++|+|++|.++. +|..++ ++++|++|++++|.....+|..+++++
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 273 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred CCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence 455577778888888888888888777 788877 888888888888766777887788888
Q ss_pred CCceEEecccc-ccc-cCcccCCCC------CCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHH
Q 043647 627 NLRHLVVTYVD-LIR-EMPLGIKEL------KCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALE 698 (1096)
Q Consensus 627 ~L~~L~l~~~~-~~~-~~p~~i~~L------~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~ 698 (1096)
+|++|++++|. ... .+|..++++ ++|++|..... .+..
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n------~l~~---------------------------- 319 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN------NLKT---------------------------- 319 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS------CCSS----------------------------
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC------cCCc----------------------------
Confidence 88888888776 333 477766665 66665532111 0000
Q ss_pred HHHhh--ccCCCCCCCeEEEeeeCCC-CCCcccCCccccceeEEeecCCCCCCCCC-CCCCcCC-cceeecccccceeEe
Q 043647 699 KNVLD--MLQPHRSLKELTVKCYGGT-VFPSWMGDPLFSNIVLLRLEDCEKCTSLP-SLGLLGS-LKNLTIKGMRRLKSI 773 (1096)
Q Consensus 699 ~~~~~--~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~-L~~L~L~~~~~l~~~ 773 (1096)
+.. .+..+++|+.|++++|... .+| .+.. +++|+.|++++|... .+| .++.+++ |+.|+++++. +..+
T Consensus 320 --ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~--l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-l~~l 392 (636)
T 4eco_A 320 --FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS--EIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK-LKYI 392 (636)
T ss_dssp --CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE--EEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC-CSSC
T ss_pred --cCchhhhccCCCCCEEeCcCCcCccchh-hhCC--CCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc-Cccc
Confidence 111 3455667788888877776 677 4433 678888888887544 555 5777888 8888888754 4444
Q ss_pred cccccCCCCCCCCCCCceecccCCCcCccccc-Cc-cCCcccccccccEEEEecCCCcCccCCCCCCCccEEEEecccCc
Q 043647 774 GFEIYGEGCSKPFQALETLCFEDLPEWEHWNS-FK-ENDHVERFACLRQLSIVKCPRLCGRLPNHLPILEKLMIYECVQL 851 (1096)
Q Consensus 774 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~-~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l 851 (1096)
+..+.. ..+++|+.|+++++..-..... +. .......+++|+.|++++|. +. .+|.
T Consensus 393 p~~~~~----~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~-~lp~---------------- 450 (636)
T 4eco_A 393 PNIFDA----KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-IS-KFPK---------------- 450 (636)
T ss_dssp CSCCCT----TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CC-SCCT----------------
T ss_pred chhhhh----cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cC-cCCH----------------
Confidence 432211 2245788888876543221100 00 00001145577888887753 32 3332
Q ss_pred cccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcC--CCCCcCeEEEecCCCc
Q 043647 852 VVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFH--NNTSLGCIWIWKCENL 929 (1096)
Q Consensus 852 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~--~l~~L~~L~l~~c~~l 929 (1096)
..+..+++|+.|++++|....+.... + ......+..+++|+.|++++|. ++.+|..+. .+++|+.|++++| .+
T Consensus 451 -~~~~~l~~L~~L~Ls~N~l~~i~~~~-~-~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N-~l 525 (636)
T 4eco_A 451 -ELFSTGSPLSSINLMGNMLTEIPKNS-L-KDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYN-SF 525 (636)
T ss_dssp -HHHHTTCCCSEEECCSSCCSBCCSSS-S-EETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSS-CC
T ss_pred -HHHccCCCCCEEECCCCCCCCcCHHH-h-ccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCC-CC
Confidence 12334667777777777543211000 0 0000112234489999999986 557888776 8999999999985 45
Q ss_pred CcCCCCCCCCCCcCeEEEeCCCCCcccCCCCCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCC
Q 043647 930 KSLPEGLPNLNSLHNIYVWDCPSLVSFPEGGLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPD 1009 (1096)
Q Consensus 930 ~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~ 1009 (1096)
+.+|..+..+++|+.|++++|..+ +++.....+| ..+.++++|++|++++| .
T Consensus 526 ~~ip~~~~~l~~L~~L~Ls~N~~l-----------------s~N~l~~~~p----------~~l~~l~~L~~L~Ls~N-~ 577 (636)
T 4eco_A 526 SKFPTQPLNSSTLKGFGIRNQRDA-----------------QGNRTLREWP----------EGITLCPSLTQLQIGSN-D 577 (636)
T ss_dssp SSCCCGGGGCSSCCEEECCSCBCT-----------------TCCBCCCCCC----------TTGGGCSSCCEEECCSS-C
T ss_pred CCcChhhhcCCCCCEEECCCCccc-----------------ccCcccccCh----------HHHhcCCCCCEEECCCC-c
Confidence 568888888999999999775411 1122222333 26778899999999999 6
Q ss_pred ccccccccccCcCCCCccEEEeccCCCCcccCcCC--------CCCCCCcCeEeeccCCCCC
Q 043647 1010 AVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNG--------FRNLAFLEYLQIRDCPKLT 1063 (1096)
Q Consensus 1010 l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~--------l~~l~~L~~L~l~~c~~l~ 1063 (1096)
++.+|.. ..++|+.|++++|+ +.+++... ...+...+..++.+|+.+.
T Consensus 578 l~~ip~~-----~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 578 IRKVNEK-----ITPNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp CCBCCSC-----CCTTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred CCccCHh-----HhCcCCEEECcCCC-CccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 7889874 34799999999954 66554211 2234455667788887654
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=3.4e-27 Score=289.97 Aligned_cols=492 Identities=16% Similarity=0.076 Sum_probs=293.3
Q ss_pred hhhhhhcCCCCcceEEEecccccccCC-CCcCCCCccceeeccccccccccc-ccccCCCCcEEeccCcccCcccCcc-c
Q 043647 546 VVLSNLLPKFTKLRVLSLKKYYITELP-HSIGDLKHLRYINLSETMIRCLPE-SICSLCNLQFLILRGCYRLKKLPSN-L 622 (1096)
Q Consensus 546 ~~~~~~~~~~~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i 622 (1096)
.+++..|.++++|++|+|++|.++.+| ..|.+|++|++|+|++|.|+.+|. .|.+|.+|++|+|++| .+..+|.. +
T Consensus 66 ~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~ 144 (635)
T 4g8a_A 66 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPI 144 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCC
T ss_pred CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhh
Confidence 344556777888888888888887774 457778888888888888887765 4677888888888875 56666653 6
Q ss_pred cCCCCCceEEeccccccc--cCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHH
Q 043647 623 RNLINLRHLVVTYVDLIR--EMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKN 700 (1096)
Q Consensus 623 ~~l~~L~~L~l~~~~~~~--~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~ 700 (1096)
+++++|++|++++|. +. .+|..++.+++|++|....... .......+..+.++........+..-....
T Consensus 145 ~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~------- 215 (635)
T 4g8a_A 145 GHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNF------- 215 (635)
T ss_dssp TTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCC-CEECGGGGHHHHTCTTCCCEEECTTCCCCE-------
T ss_pred hcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccc-cccccccccchhhhhhhhhhhhcccCcccc-------
Confidence 778888888888776 33 2456677777777764322111 111111122222211000000000000000
Q ss_pred HhhccCCCCCCCeEEEeeeCCCC--CCcccCCccccceeEEeec--CCCCCCCCC-----CCCCcCCcceeeccccccee
Q 043647 701 VLDMLQPHRSLKELTVKCYGGTV--FPSWMGDPLFSNIVLLRLE--DCEKCTSLP-----SLGLLGSLKNLTIKGMRRLK 771 (1096)
Q Consensus 701 ~~~~l~~~~~L~~L~l~~~~~~~--~p~~~~~~~~~~L~~L~L~--~~~~~~~l~-----~l~~l~~L~~L~L~~~~~l~ 771 (1096)
..........+..+.+.++.... .+..+.. +..++...+. .......+. .+..+..+..+.+.....-.
T Consensus 216 i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~--l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~ 293 (635)
T 4g8a_A 216 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG--LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 293 (635)
T ss_dssp ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHT--TTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCS
T ss_pred cCcccccchhhhhhhhhcccccccccchhhcC--Ccccccccccccccccccccccccccccccccchhhhhhhhhhhcc
Confidence 00001111223344444332110 0111111 2333333322 211111111 22333333333332211000
Q ss_pred EecccccCCCCCCCCCCCceecccCCCcCcccccCccCCcccccccccEEEEecCCCcCccCCCCCCCccEEEEecccCc
Q 043647 772 SIGFEIYGEGCSKPFQALETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLPNHLPILEKLMIYECVQL 851 (1096)
Q Consensus 772 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l 851 (1096)
.... . ...+..+.+++.+.+.+..... .. ....+.+|+.|++.+|..- ...+..++.|+.+.+.++...
T Consensus 294 ~~~~-~--~~~~~~~~~l~~l~~~~~~~~~-~~------~~~~~~~L~~L~l~~~~~~-~~~~~~l~~L~~l~l~~n~~~ 362 (635)
T 4g8a_A 294 YLDG-I--IDLFNCLTNVSSFSLVSVTIER-VK------DFSYNFGWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGG 362 (635)
T ss_dssp CEEE-C--TTTTGGGTTCSEEEEESCEEEE-CG------GGGSCCCCSEEEEESCEES-SCCCCBCTTCCEEEEESCCSC
T ss_pred cccc-h--hhhhhhhccccccccccccccc-cc------ccccchhhhhhhccccccc-CcCcccchhhhhcccccccCC
Confidence 0000 0 0112335566666655433211 10 1345678899999887533 244456788888888765432
Q ss_pred -cccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcC
Q 043647 852 -VVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLK 930 (1096)
Q Consensus 852 -~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 930 (1096)
......+++|+.|++++|...... .....+..+.+|+.|++..+. ...++..+..+++|+.+++.+++...
T Consensus 363 ~~~~~~~l~~L~~L~ls~n~l~~~~-------~~~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~ 434 (635)
T 4g8a_A 363 NAFSEVDLPSLEFLDLSRNGLSFKG-------CCSQSDFGTISLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQ 434 (635)
T ss_dssp CBCCCCBCTTCCEEECCSSCCBEEE-------ECCHHHHSCSCCCEEECCSCS-EEEECSCCTTCTTCCEEECTTSEEES
T ss_pred CCcccccccccccchhhcccccccc-------ccccchhhhhhhhhhhccccc-cccccccccccccccchhhhhccccc
Confidence 223456889999999988643211 011123356689999998876 44556677889999999999876665
Q ss_pred cCC-CCCCCCCCcCeEEEeCCCCCcccCCC--CCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCC
Q 043647 931 SLP-EGLPNLNSLHNIYVWDCPSLVSFPEG--GLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGC 1007 (1096)
Q Consensus 931 ~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c 1007 (1096)
..+ ..+..+++|+.++++++ .+..++.. ...++|+.|+++++.....+. +..+..+++|++|++++|
T Consensus 435 ~~~~~~~~~l~~l~~l~ls~n-~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~---------~~~~~~l~~L~~L~Ls~N 504 (635)
T 4g8a_A 435 MSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFL---------PDIFTELRNLTFLDLSQC 504 (635)
T ss_dssp TTSSCTTTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEE---------CSCCTTCTTCCEEECTTS
T ss_pred ccccccccccccccccccccc-ccccccccccccchhhhhhhhhhcccccccC---------chhhhhccccCEEECCCC
Confidence 554 45778999999999985 44444433 234889999999987655432 136889999999999999
Q ss_pred CCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCCCCC---ccccccceeeccCc
Q 043647 1008 PDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFPEAG---LPSSLLELYINDYP 1083 (1096)
Q Consensus 1008 ~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~---l~~~L~~L~i~~c~ 1083 (1096)
.+..+++.. |..+++|+.|++++ ++++.++...|.++++|+.|+|++ ++|+.+++.. ++++|+.|++++||
T Consensus 505 -~L~~l~~~~--f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 505 -QLEQLSPTA--FNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp -CCCEECTTT--TTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred -ccCCcChHH--HcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 788876542 57889999999999 679999877899999999999999 7888887754 35789999998865
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=285.33 Aligned_cols=434 Identities=14% Similarity=0.064 Sum_probs=297.0
Q ss_pred cCceeecccchhhhhhhhccchhhhhhhhcCCCCcceEEEecccccccC-CCCcCCCCccceeecccccccccccccccC
Q 043647 523 EHLRTFLPVLSYEIRLLTRYITDVVLSNLLPKFTKLRVLSLKKYYITEL-PHSIGDLKHLRYINLSETMIRCLPESICSL 601 (1096)
Q Consensus 523 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L 601 (1096)
++++.+.... +.....++..|..+++|++|++++|.++.+ |..|+++++|++|+|++|.++.+|.. .+
T Consensus 21 ~~L~~L~Ls~---------n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l 89 (520)
T 2z7x_B 21 QKTTILNISQ---------NYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PT 89 (520)
T ss_dssp TTCSEEECCS---------SCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CC
T ss_pred ccccEEECCC---------CcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--cc
Confidence 6777776554 122334556789999999999999999988 78999999999999999999999988 89
Q ss_pred CCCcEEeccCcccCcc--cCccccCCCCCceEEeccccccccCcccCCCCCCC--CcCCceEeccc-CCCCccccccccc
Q 043647 602 CNLQFLILRGCYRLKK--LPSNLRNLINLRHLVVTYVDLIREMPLGIKELKCL--QMLSNFIVGMV-TGSRLKDLKDFKL 676 (1096)
Q Consensus 602 ~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L--~~L~~~~~~~~-~~~~~~~L~~l~~ 676 (1096)
++|++|++++| .+.. +|..++++++|++|++++|. +.. ..++.+++| +.|........ .+.....+..+..
T Consensus 90 ~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~ 165 (520)
T 2z7x_B 90 VNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT 165 (520)
T ss_dssp CCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE
T ss_pred CCccEEeccCC-ccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccccccccccccccccccc
Confidence 99999999997 4554 67899999999999999987 443 346666666 66543222110 0111111111110
Q ss_pred ccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCCeEEEeeeCCC-CCCcccCCccccceeEEeecCCC-------CCC
Q 043647 677 LRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKELTVKCYGGT-VFPSWMGDPLFSNIVLLRLEDCE-------KCT 748 (1096)
Q Consensus 677 L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~L~~~~-------~~~ 748 (1096)
....+++.++... .++.... ..+++|+.|++++|. ...
T Consensus 166 ---------------------------------~~l~l~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~ 211 (520)
T 2z7x_B 166 ---------------------------------ESLHIVFPTNKEFHFILDVSV-KTVANLELSNIKCVLEDNKCSYFLS 211 (520)
T ss_dssp ---------------------------------EEEEEECCSSSCCCCCCCCCC-TTCSEEEECCEEECCSTTTTHHHHH
T ss_pred ---------------------------------ceEEEEeccCcchhhhhhhhh-hcccceeeccccccccccccceeec
Confidence 0112233333222 1222211 237888888888875 223
Q ss_pred CCCCCCCcCCcceeecccccceeEecccccCCCCCCCCCCCceecccCCCcCcccccCccCCcccccccccEEEEecCCC
Q 043647 749 SLPSLGLLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQALETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPR 828 (1096)
Q Consensus 749 ~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 828 (1096)
.+|.++.+++|+.|++.++. +.... +.+.......++|+.|.++++.--......-.....+.+++|+.+++.++..
T Consensus 212 ~~~~l~~l~~L~~L~l~~~~-l~~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~ 288 (520)
T 2z7x_B 212 ILAKLQTNPKLSNLTLNNIE-TTWNS--FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288 (520)
T ss_dssp HHHGGGGCTTCCEEEEEEEE-EEHHH--HHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC
T ss_pred chhhhccccchhhccccccc-cCHHH--HHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce
Confidence 44567888999999988653 21110 0000000114588888887764211111100000015688888888888653
Q ss_pred cCccCCC-C------CCCccEEEEecccCccccC-CCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEc
Q 043647 829 LCGRLPN-H------LPILEKLMIYECVQLVVSF-SSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEIL 900 (1096)
Q Consensus 829 l~~~~p~-~------l~~L~~L~l~~~~~l~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~ 900 (1096)
.+|. . -++|+.|.+.++......+ ..+++|++|++++|.... .....+..+++|++|+++
T Consensus 289 ---~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~L~ 356 (520)
T 2z7x_B 289 ---GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD---------TVFENCGHLTELETLILQ 356 (520)
T ss_dssp ---CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT---------TTTTTCCCCSSCCEEECC
T ss_pred ---ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccCh---------hhhhhhccCCCCCEEEcc
Confidence 3442 1 1569999999987654443 678999999999996432 223456789999999999
Q ss_pred cCCCcc--cchhhcCCCCCcCeEEEecCCCcCcCCCC-CCCCCCcCeEEEeCCCCCcccCCCCCCCCcCeEEEccCcCCc
Q 043647 901 DCPKLE--SIAERFHNNTSLGCIWIWKCENLKSLPEG-LPNLNSLHNIYVWDCPSLVSFPEGGLPNCSLSVTIGKCEKLK 977 (1096)
Q Consensus 901 ~~~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~ 977 (1096)
+|.... .+|..+..+++|++|++++|.....+|.. +..+++|+.|++++|..-..+| ..++++|+.|++++| +++
T Consensus 357 ~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~~L~~L~Ls~N-~l~ 434 (520)
T 2z7x_B 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF-RCLPPRIKVLDLHSN-KIK 434 (520)
T ss_dssp SSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG-GSCCTTCCEEECCSS-CCC
T ss_pred CCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchh-hhhcccCCEEECCCC-ccc
Confidence 997443 45677899999999999997654447754 7889999999999976545555 345689999999997 566
Q ss_pred CCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCC
Q 043647 978 ALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFP 1035 (1096)
Q Consensus 978 ~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~ 1035 (1096)
.+|. .+..+++|++|++++| .+..+|.. .+..+++|+.|++++++
T Consensus 435 ~ip~----------~~~~l~~L~~L~L~~N-~l~~l~~~--~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 435 SIPK----------QVVKLEALQELNVASN-QLKSVPDG--IFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCCG----------GGGGCTTCCEEECCSS-CCCCCCTT--TTTTCTTCCEEECCSSC
T ss_pred ccch----------hhhcCCCCCEEECCCC-cCCccCHH--HhccCCcccEEECcCCC
Confidence 7663 5668999999999999 88899976 24678999999999965
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.3e-26 Score=268.60 Aligned_cols=388 Identities=20% Similarity=0.189 Sum_probs=205.7
Q ss_pred CCCcceEEEecccccccCCCCcCCCCccceeeccccccc-ccccccccCCCC-------------cEEeccCcccCcccC
Q 043647 554 KFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIR-CLPESICSLCNL-------------QFLILRGCYRLKKLP 619 (1096)
Q Consensus 554 ~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L-------------~~L~L~~~~~l~~lp 619 (1096)
+.+.|++|++++|.+..+|.+|+++++|++|++++|.+. .+|.+++++.+| ++|++++| .+..+|
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCC
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCC
Confidence 358899999999999999999999999999999999987 789999999987 55555553 344444
Q ss_pred ccccCCCCCceEEeccccccccCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHH
Q 043647 620 SNLRNLINLRHLVVTYVDLIREMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEK 699 (1096)
Q Consensus 620 ~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~ 699 (1096)
.. .++|++|++++|. +..+|..+
T Consensus 88 ~~---~~~L~~L~l~~n~-l~~lp~~~----------------------------------------------------- 110 (454)
T 1jl5_A 88 EL---PPHLESLVASCNS-LTELPELP----------------------------------------------------- 110 (454)
T ss_dssp SC---CTTCSEEECCSSC-CSSCCCCC-----------------------------------------------------
T ss_pred CC---cCCCCEEEccCCc-CCcccccc-----------------------------------------------------
Confidence 31 2445555555444 33333221
Q ss_pred HHhhccCCCCCCCeEEEeeeCCCCCCcccCCccccceeEEeecCCCCCCCCCCCCCcCCcceeecccccceeEecccccC
Q 043647 700 NVLDMLQPHRSLKELTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCTSLPSLGLLGSLKNLTIKGMRRLKSIGFEIYG 779 (1096)
Q Consensus 700 ~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~ 779 (1096)
++|+.|++++|....+|.+ .++|++|++++|.. +.+|.++.+++|++|+++++ .++.++.
T Consensus 111 ---------~~L~~L~l~~n~l~~l~~~-----~~~L~~L~L~~n~l-~~lp~~~~l~~L~~L~l~~N-~l~~lp~---- 170 (454)
T 1jl5_A 111 ---------QSLKSLLVDNNNLKALSDL-----PPLLEYLGVSNNQL-EKLPELQNSSFLKIIDVDNN-SLKKLPD---- 170 (454)
T ss_dssp ---------TTCCEEECCSSCCSCCCSC-----CTTCCEEECCSSCC-SSCCCCTTCTTCCEEECCSS-CCSCCCC----
T ss_pred ---------CCCcEEECCCCccCcccCC-----CCCCCEEECcCCCC-CCCcccCCCCCCCEEECCCC-cCcccCC----
Confidence 3455555555555544432 24666666666633 34566666666666666654 2332221
Q ss_pred CCCCCCCCCCceecccCCCcCcccccCccCCcccccccccEEEEecCCCcCccCCCCCCCccEEEEecccCcc-ccCCCC
Q 043647 780 EGCSKPFQALETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLPNHLPILEKLMIYECVQLV-VSFSSL 858 (1096)
Q Consensus 780 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~-~~~~~l 858 (1096)
.+++|++|+++++. +.... ..+.+++|+.|++++|. +. .+|...++|+.|++.+|.-.. ..+..+
T Consensus 171 -----~~~~L~~L~L~~n~-l~~l~------~~~~l~~L~~L~l~~N~-l~-~l~~~~~~L~~L~l~~n~l~~lp~~~~l 236 (454)
T 1jl5_A 171 -----LPPSLEFIAAGNNQ-LEELP------ELQNLPFLTAIYADNNS-LK-KLPDLPLSLESIVAGNNILEELPELQNL 236 (454)
T ss_dssp -----CCTTCCEEECCSSC-CSSCC------CCTTCTTCCEEECCSSC-CS-SCCCCCTTCCEEECCSSCCSSCCCCTTC
T ss_pred -----CcccccEEECcCCc-CCcCc------cccCCCCCCEEECCCCc-CC-cCCCCcCcccEEECcCCcCCcccccCCC
Confidence 13466666666542 22221 14567778888887763 43 466666778888887764221 136677
Q ss_pred CCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCCCCCCC
Q 043647 859 PLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLPEGLPN 938 (1096)
Q Consensus 859 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~ 938 (1096)
++|+.|++++|....+ . ..+++|++|++++|. ++.+|.. +++|+.|++++| .+..+|..
T Consensus 237 ~~L~~L~l~~N~l~~l---------~----~~~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~N-~l~~l~~~--- 295 (454)
T 1jl5_A 237 PFLTTIYADNNLLKTL---------P----DLPPSLEALNVRDNY-LTDLPEL---PQSLTFLDVSEN-IFSGLSEL--- 295 (454)
T ss_dssp TTCCEEECCSSCCSSC---------C----SCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSEESCC---
T ss_pred CCCCEEECCCCcCCcc---------c----ccccccCEEECCCCc-ccccCcc---cCcCCEEECcCC-ccCcccCc---
Confidence 8888888888753321 1 123678888888876 5556543 478888888885 45555532
Q ss_pred CCCcCeEEEeCCCCCcccCCCCCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccc
Q 043647 939 LNSLHNIYVWDCPSLVSFPEGGLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEI 1018 (1096)
Q Consensus 939 l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~ 1018 (1096)
.++|+.|++++| .++.++. ++++|+.|+++++ +++.+|. .+++|+.|++++| .+..+|.
T Consensus 296 ~~~L~~L~l~~N-~l~~i~~--~~~~L~~L~Ls~N-~l~~lp~-------------~~~~L~~L~L~~N-~l~~lp~--- 354 (454)
T 1jl5_A 296 PPNLYYLNASSN-EIRSLCD--LPPSLEELNVSNN-KLIELPA-------------LPPRLERLIASFN-HLAEVPE--- 354 (454)
T ss_dssp CTTCCEEECCSS-CCSEECC--CCTTCCEEECCSS-CCSCCCC-------------CCTTCCEEECCSS-CCSCCCC---
T ss_pred CCcCCEEECcCC-cCCcccC--CcCcCCEEECCCC-ccccccc-------------cCCcCCEEECCCC-ccccccc---
Confidence 268888888874 4555653 5578888888875 4555542 2578888888888 7777775
Q ss_pred cCcCCCCccEEEeccCCCCcc---cCcCCCCCC-------------CCcCeEeeccCCCCCCCCCCCccccccceeeccC
Q 043647 1019 GMTFPSSLTELVIVRFPKLKY---LSSNGFRNL-------------AFLEYLQIRDCPKLTSFPEAGLPSSLLELYINDY 1082 (1096)
Q Consensus 1019 ~~~~~~sL~~L~l~~c~~l~~---l~~~~l~~l-------------~~L~~L~l~~c~~l~~l~~~~l~~~L~~L~i~~c 1082 (1096)
.+++|++|++++| .++. +| ..+..+ ++|+.|++++ +.++.+|. +|++|+.|.+.+|
T Consensus 355 ---~l~~L~~L~L~~N-~l~~l~~ip-~~l~~L~~n~~~~~i~~~~~~L~~L~ls~-N~l~~~~~--iP~sl~~L~~~~~ 426 (454)
T 1jl5_A 355 ---LPQNLKQLHVEYN-PLREFPDIP-ESVEDLRMNSHLAEVPELPQNLKQLHVET-NPLREFPD--IPESVEDLRMNSE 426 (454)
T ss_dssp ---CCTTCCEEECCSS-CCSSCCCCC-TTCCEEECCC-------------------------------------------
T ss_pred ---hhhhccEEECCCC-CCCcCCCCh-HHHHhhhhcccccccccccCcCCEEECCC-CcCCcccc--chhhHhheeCcCc
Confidence 3678888888884 4554 44 456555 8899999999 56776654 6788999998876
Q ss_pred c
Q 043647 1083 P 1083 (1096)
Q Consensus 1083 ~ 1083 (1096)
.
T Consensus 427 ~ 427 (454)
T 1jl5_A 427 R 427 (454)
T ss_dssp -
T ss_pred c
Confidence 4
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.1e-26 Score=279.23 Aligned_cols=425 Identities=19% Similarity=0.140 Sum_probs=248.5
Q ss_pred CcceEEEecccccccCC-CCcCCCCccceeeccccccccc-ccccccCCCCcEEeccCcccCcccCccccCCCCCceEEe
Q 043647 556 TKLRVLSLKKYYITELP-HSIGDLKHLRYINLSETMIRCL-PESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLVV 633 (1096)
Q Consensus 556 ~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l 633 (1096)
++|++|++++|.++.++ ..|+++++|++|+|++|.++.+ |..+.++++|++|+|++| .+..+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--ccccCCEEEC
Confidence 78889999999888885 6788899999999999988877 567888999999999985 67788876 8889999999
Q ss_pred ccccccccC--cccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCC
Q 043647 634 TYVDLIREM--PLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSL 711 (1096)
Q Consensus 634 ~~~~~~~~~--p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L 711 (1096)
++|. +..+ |..++++++|++|+...... ... .+..+..+ +|
T Consensus 129 s~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l-~~~----------------------------------~~~~l~~L-~L 171 (562)
T 3a79_B 129 SFND-FDVLPVCKEFGNLTKLTFLGLSAAKF-RQL----------------------------------DLLPVAHL-HL 171 (562)
T ss_dssp CSSC-CSBCCCCGGGGGCTTCCEEEEECSBC-CTT----------------------------------TTGGGTTS-CE
T ss_pred CCCC-ccccCchHhhcccCcccEEecCCCcc-ccC----------------------------------chhhhhhc-ee
Confidence 8887 5554 46788888888875322110 000 11112222 34
Q ss_pred CeEEEeeeCC--C-CCCcccCCccccceeEEeecCCCCCCCCC--CCCCcCCcceeeccccc----ceeEecccccCCCC
Q 043647 712 KELTVKCYGG--T-VFPSWMGDPLFSNIVLLRLEDCEKCTSLP--SLGLLGSLKNLTIKGMR----RLKSIGFEIYGEGC 782 (1096)
Q Consensus 712 ~~L~l~~~~~--~-~~p~~~~~~~~~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~----~l~~~~~~~~~~~~ 782 (1096)
+.|+++++.. . ..|.++.......+ .+++++|.....++ .+..+++|+.|+++++. .+......
T Consensus 172 ~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~------ 244 (562)
T 3a79_B 172 SCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE------ 244 (562)
T ss_dssp EEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHH------
T ss_pred eEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHH------
Confidence 8888888765 2 23444332111122 45666665555444 35677888888887642 11111111
Q ss_pred CCCCCCCceecccCCCcCcccccCccCCcccccccccEEEEecCCCcCccCCCCC-----CCccEEEEecccCccccCC-
Q 043647 783 SKPFQALETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLPNHL-----PILEKLMIYECVQLVVSFS- 856 (1096)
Q Consensus 783 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l-----~~L~~L~l~~~~~l~~~~~- 856 (1096)
+...++|+.|.+.++.--... .... ......++|++|++++|. +.+.+|..+ ++|+.|.+.+.......++
T Consensus 245 l~~l~~L~~L~L~~~~l~~~~-~~~~-~~~~~~~~L~~L~l~~n~-l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~ 321 (562)
T 3a79_B 245 LTRGPTLLNVTLQHIETTWKC-SVKL-FQFFWPRPVEYLNIYNLT-ITERIDREEFTYSETALKSLMIEHVKNQVFLFSK 321 (562)
T ss_dssp HHSCSSCEEEEEEEEEECHHH-HHHH-HHHHTTSSEEEEEEEEEE-ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCH
T ss_pred HhccCcceEEEecCCcCcHHH-HHHH-HHhhhcccccEEEEeccE-eeccccchhhhcccccchheehhhcccceeecCh
Confidence 123566777766543211000 0000 001123488999998874 344667655 7777777665432211111
Q ss_pred -------CCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCc
Q 043647 857 -------SLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENL 929 (1096)
Q Consensus 857 -------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 929 (1096)
..++|++|++++|.... ......+++|++|++++|.....+|..+..+++|+.|++++| .+
T Consensus 322 ~~~~~~~~~~~L~~L~l~~n~~~~-----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l 389 (562)
T 3a79_B 322 EALYSVFAEMNIKMLSISDTPFIH-----------MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GL 389 (562)
T ss_dssp HHHHHHHHTCCCSEEEEESSCCCC-----------CCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CC
T ss_pred hhhhhhhccCcceEEEccCCCccc-----------ccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-Cc
Confidence 12457888888775322 111246677888888887655546667777788888888774 45
Q ss_pred CcCC---CCCCCCCCcCeEEEeCCCCCcccCCCCC--CCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCC-CCcceEE
Q 043647 930 KSLP---EGLPNLNSLHNIYVWDCPSLVSFPEGGL--PNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKL-TSLKILC 1003 (1096)
Q Consensus 930 ~~lp---~~l~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l-~~L~~L~ 1003 (1096)
+.++ ..+..+++|+.|++++|..-..+|...+ .++|+.|++++|.--..+ +..+ ++|+.|+
T Consensus 390 ~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------~~~l~~~L~~L~ 456 (562)
T 3a79_B 390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV-------------FRCLPPKVKVLD 456 (562)
T ss_dssp CBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG-------------GSSCCTTCSEEE
T ss_pred CCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch-------------hhhhcCcCCEEE
Confidence 5443 4567777888888877543332554221 255555555554322211 1122 4555555
Q ss_pred EcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCC
Q 043647 1004 VIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCP 1060 (1096)
Q Consensus 1004 l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~ 1060 (1096)
+++| .++.+|... ..+++|+.|++++ ++++.+|...+..+++|+.|++++++
T Consensus 457 L~~N-~l~~ip~~~---~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 457 LHNN-RIMSIPKDV---THLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCSS-CCCCCCTTT---TSSCCCSEEECCS-SCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCC-cCcccChhh---cCCCCCCEEECCC-CCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 5555 555555432 2455555555555 34555553335555555555555543
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=2.1e-24 Score=265.15 Aligned_cols=505 Identities=14% Similarity=0.082 Sum_probs=316.3
Q ss_pred cccCCcceeeeeeecccCCcccccccccCcCceeecccchhhhhhhhccchhhhhhhhcCCCCcceEEEecccccccCCC
Q 043647 494 SRRFRRARHSSYTCGFYDGKSKFEVFHEVEHLRTFLPVLSYEIRLLTRYITDVVLSNLLPKFTKLRVLSLKKYYITELPH 573 (1096)
Q Consensus 494 ~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~lp~ 573 (1096)
...+..++++.+......... ...|..+++|+.|.... +....+++..|.++++|++|+|++|.++.+|.
T Consensus 48 ~~lp~~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~---------N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 48 DNLPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSR---------CEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp SSSCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTT---------CCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CCCCcCCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCC---------CcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 345667788877655443221 23577888999887654 22334566789999999999999999999974
Q ss_pred -CcCCCCccceeeccccccccccc-ccccCCCCcEEeccCcccCc--ccCccccCCCCCceEEeccccccccC-cccCCC
Q 043647 574 -SIGDLKHLRYINLSETMIRCLPE-SICSLCNLQFLILRGCYRLK--KLPSNLRNLINLRHLVVTYVDLIREM-PLGIKE 648 (1096)
Q Consensus 574 -~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~-p~~i~~ 648 (1096)
.|.++.+|++|+|++|.++.+|+ .++++++|++|++++| .+. .+|..++.+++|++|++++|. +..+ |..+..
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~ 195 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRV 195 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHH
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcc-ccccccccccc
Confidence 68999999999999999999976 5899999999999996 454 467888999999999999998 4444 455666
Q ss_pred CCCCCcCCceEecccCCCCccccc--cccccc-ceEEEeecCCCCCCcchHHHHHHhhccCCCCCCCeEEEeeeCCCC--
Q 043647 649 LKCLQMLSNFIVGMVTGSRLKDLK--DFKLLR-GELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKELTVKCYGGTV-- 723 (1096)
Q Consensus 649 L~~L~~L~~~~~~~~~~~~~~~L~--~l~~L~-~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-- 723 (1096)
+.+++.+.....-. ...+..+. ....+. ..+.+.. .. .... .....+..+..++...+.......
T Consensus 196 L~~l~~~~~~~~ls--~n~l~~i~~~~~~~~~~~~l~l~~--n~---~~~~---~~~~~~~~l~~l~~~~l~~~~~~~~~ 265 (635)
T 4g8a_A 196 LHQMPLLNLSLDLS--LNPMNFIQPGAFKEIRLHKLTLRN--NF---DSLN---VMKTCIQGLAGLEVHRLVLGEFRNEG 265 (635)
T ss_dssp HHTCTTCCCEEECT--TCCCCEECTTTTTTCEEEEEEEES--CC---SSHH---HHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred hhhhhhhhhhhhcc--cCcccccCcccccchhhhhhhhhc--cc---cccc---ccchhhcCCccccccccccccccccc
Confidence 66665442211100 00011000 000000 0111110 00 0011 111223344555555554332211
Q ss_pred -CCcccC--CccccceeEEeecCCCCCC----CCCCCCCcCCcceeecccccceeEecccccCCCCCCCCCCCceecccC
Q 043647 724 -FPSWMG--DPLFSNIVLLRLEDCEKCT----SLPSLGLLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQALETLCFED 796 (1096)
Q Consensus 724 -~p~~~~--~~~~~~L~~L~L~~~~~~~----~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 796 (1096)
+..... ......+....+..+.... ....+..+++++.+.+.++.. ..+.. ......|+.|.+.+
T Consensus 266 ~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~-------~~~~~~L~~L~l~~ 337 (635)
T 4g8a_A 266 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTI-ERVKD-------FSYNFGWQHLELVN 337 (635)
T ss_dssp CCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEE-EECGG-------GGSCCCCSEEEEES
T ss_pred ccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccc-ccccc-------cccchhhhhhhccc
Confidence 111100 0113445544444332111 122455667788887776432 22211 12256778887776
Q ss_pred CCcCcccccCccCCcccccccccEEEEecCCCcCccCCCCCCCccEEEEecccCcc-----ccCCCCCCcceEEeccCCC
Q 043647 797 LPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLPNHLPILEKLMIYECVQLV-----VSFSSLPLLCKLEIDRCKG 871 (1096)
Q Consensus 797 ~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~-----~~~~~l~~L~~L~l~~~~~ 871 (1096)
+..- ... ...++.|+.+.+..+......-...+++|+.|.+.++.... ..+..+++|+.|++..+..
T Consensus 338 ~~~~-~~~-------~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~ 409 (635)
T 4g8a_A 338 CKFG-QFP-------TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGV 409 (635)
T ss_dssp CEES-SCC-------CCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSE
T ss_pred cccc-CcC-------cccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccc
Confidence 5321 111 34577788888877543221112357788888887654321 1233467888888887753
Q ss_pred ccccCCCCcccccCCCCCCCCCccEEEEccCCCcccch-hhcCCCCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCC
Q 043647 872 VACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIA-ERFHNNTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDC 950 (1096)
Q Consensus 872 ~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 950 (1096)
.. ....+..+++|+.+++.++......+ ..+..+++|+.++++++......|..+..+++|+.|++++|
T Consensus 410 ~~----------~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N 479 (635)
T 4g8a_A 410 IT----------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 479 (635)
T ss_dssp EE----------ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred cc----------ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhc
Confidence 32 22345667888888888776544433 34677888888888886555555666778888888988887
Q ss_pred CCCcccCCCCC--CCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccE
Q 043647 951 PSLVSFPEGGL--PNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTE 1028 (1096)
Q Consensus 951 ~~l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~ 1028 (1096)
.....++...+ .++|+.|++++| +++.++. ..+.++++|++|+|++| .+..++... |..+++|+.
T Consensus 480 ~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~---------~~f~~l~~L~~L~Ls~N-~l~~l~~~~--~~~l~~L~~ 546 (635)
T 4g8a_A 480 SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP---------TAFNSLSSLQVLNMSHN-NFFSLDTFP--YKCLNSLQV 546 (635)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTS-CCCEECT---------TTTTTCTTCCEEECTTS-CCCBCCCGG--GTTCTTCCE
T ss_pred ccccccCchhhhhccccCEEECCCC-ccCCcCh---------HHHcCCCCCCEEECCCC-cCCCCChhH--HhCCCCCCE
Confidence 66665443333 378888888887 4554431 36888999999999999 788887642 467889999
Q ss_pred EEeccCCCCcccCcCCCCCC-CCcCeEeeccCC
Q 043647 1029 LVIVRFPKLKYLSSNGFRNL-AFLEYLQIRDCP 1060 (1096)
Q Consensus 1029 L~l~~c~~l~~l~~~~l~~l-~~L~~L~l~~c~ 1060 (1096)
|++++ |+++.++...+..+ ++|+.|+|+++|
T Consensus 547 L~Ls~-N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 547 LDYSL-NHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp EECTT-SCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred EECCC-CcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 99999 67888877788887 689999998754
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=9.6e-25 Score=255.74 Aligned_cols=347 Identities=16% Similarity=0.192 Sum_probs=207.9
Q ss_pred CCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceEEec
Q 043647 555 FTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLVVT 634 (1096)
Q Consensus 555 ~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~ 634 (1096)
+++|+.|+++++.+..+|. +..+++|++|++++|.++.+|+ +.++++|++|++++| .+..+|. +.++++|++|+++
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEECC
Confidence 4567788888887777764 7777888888888888887776 778888888888875 5666665 7788888888887
Q ss_pred cccccccCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCCeE
Q 043647 635 YVDLIREMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKEL 714 (1096)
Q Consensus 635 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 714 (1096)
+|. +..+|. ++++++|++|........ . ...+..+++|+.|
T Consensus 121 ~n~-l~~~~~-~~~l~~L~~L~l~~n~l~------~-------------------------------~~~~~~l~~L~~L 161 (466)
T 1o6v_A 121 NNQ-ITDIDP-LKNLTNLNRLELSSNTIS------D-------------------------------ISALSGLTSLQQL 161 (466)
T ss_dssp SSC-CCCCGG-GTTCTTCSEEEEEEEEEC------C-------------------------------CGGGTTCTTCSEE
T ss_pred CCC-CCCChH-HcCCCCCCEEECCCCccC------C-------------------------------ChhhccCCcccEe
Confidence 776 555543 555555555532211100 0 0012334455555
Q ss_pred EEeeeCCCCCCcccCCccccceeEEeecCCCCCCCCCCCCCcCCcceeecccccceeEecccccCCCCCCCCCCCceecc
Q 043647 715 TVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCTSLPSLGLLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQALETLCF 794 (1096)
Q Consensus 715 ~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l 794 (1096)
++.+ .....+. +. .+++|+.|++++|. +..++.+..+++|+.|+++++. +.
T Consensus 162 ~l~~-~~~~~~~-~~--~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~-l~----------------------- 212 (466)
T 1o6v_A 162 SFGN-QVTDLKP-LA--NLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQ-IS----------------------- 212 (466)
T ss_dssp EEEE-SCCCCGG-GT--TCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC-CC-----------------------
T ss_pred ecCC-cccCchh-hc--cCCCCCEEECcCCc-CCCChhhccCCCCCEEEecCCc-cc-----------------------
Confidence 5542 2222222 22 25556666666553 2333444455555555554431 10
Q ss_pred cCCCcCcccccCccCCcccccccccEEEEecCCCcCccCCCCCCCccEEEEecccCccccCCCCCCcceEEeccCCCccc
Q 043647 795 EDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLPNHLPILEKLMIYECVQLVVSFSSLPLLCKLEIDRCKGVAC 874 (1096)
Q Consensus 795 ~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~ 874 (1096)
.... .+.+++|+.|++++|. +. .+ ..+..+++|+.|++++|.....
T Consensus 213 -------~~~~------~~~l~~L~~L~l~~n~-l~-~~-------------------~~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 213 -------DITP------LGILTNLDELSLNGNQ-LK-DI-------------------GTLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp -------CCGG------GGGCTTCCEEECCSSC-CC-CC-------------------GGGGGCTTCSEEECCSSCCCCC
T ss_pred -------cccc------ccccCCCCEEECCCCC-cc-cc-------------------hhhhcCCCCCEEECCCCccccc
Confidence 0000 2345666666666653 21 11 1355678888888888854321
Q ss_pred cCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCCCCc
Q 043647 875 RSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCPSLV 954 (1096)
Q Consensus 875 ~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~ 954 (1096)
..+..+++|+.|++++|. +..++. +..+++|+.|++++| .++.++. +..+++|+.|++++|. ++
T Consensus 259 -----------~~~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n~-l~ 322 (466)
T 1o6v_A 259 -----------APLSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFNN-IS 322 (466)
T ss_dssp -----------GGGTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSSC-CS
T ss_pred -----------hhhhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCCc-CC
Confidence 125667888888888876 445544 777888888888885 4555544 6778888888888864 44
Q ss_pred ccCCCCCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccC
Q 043647 955 SFPEGGLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRF 1034 (1096)
Q Consensus 955 ~l~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c 1034 (1096)
.++.....++|+.|++++| .++.++ .+.++++|+.|++++| .+..++. +..+++|+.|++++|
T Consensus 323 ~~~~~~~l~~L~~L~l~~n-~l~~~~-----------~l~~l~~L~~L~l~~n-~l~~~~~----~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 323 DISPVSSLTKLQRLFFYNN-KVSDVS-----------SLANLTNINWLSAGHN-QISDLTP----LANLTRITQLGLNDQ 385 (466)
T ss_dssp CCGGGGGCTTCCEEECCSS-CCCCCG-----------GGTTCTTCCEEECCSS-CCCBCGG----GTTCTTCCEEECCCE
T ss_pred CchhhccCccCCEeECCCC-ccCCch-----------hhccCCCCCEEeCCCC-ccCccch----hhcCCCCCEEeccCC
Confidence 4433334467777777776 344433 4667777777777777 4444443 256677777777774
Q ss_pred CCCcccC
Q 043647 1035 PKLKYLS 1041 (1096)
Q Consensus 1035 ~~l~~l~ 1041 (1096)
.++.+|
T Consensus 386 -~~~~~p 391 (466)
T 1o6v_A 386 -AWTNAP 391 (466)
T ss_dssp -EEECCC
T ss_pred -cccCCc
Confidence 355444
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=1.3e-24 Score=261.27 Aligned_cols=433 Identities=15% Similarity=0.063 Sum_probs=280.5
Q ss_pred cCceeecccchhhhhhhhccchhhhhhhhcCCCCcceEEEecccccccC-CCCcCCCCccceeecccccccccccccccC
Q 043647 523 EHLRTFLPVLSYEIRLLTRYITDVVLSNLLPKFTKLRVLSLKKYYITEL-PHSIGDLKHLRYINLSETMIRCLPESICSL 601 (1096)
Q Consensus 523 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L 601 (1096)
++++.+.... +.....++..|..+++|++|++++|.++.+ |..|+++++|++|+|++|.++.+|.. .+
T Consensus 52 ~~L~~L~Ls~---------N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l 120 (562)
T 3a79_B 52 PRTKALSLSQ---------NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PM 120 (562)
T ss_dssp TTCCEEECCS---------SCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CC
T ss_pred CCcCEEECCC---------CCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--cc
Confidence 5666665544 122334556789999999999999999988 78899999999999999999999988 89
Q ss_pred CCCcEEeccCcccCccc--CccccCCCCCceEEeccccccccCcccCCCCCCC--CcCCceEeccc-CCCCccccccccc
Q 043647 602 CNLQFLILRGCYRLKKL--PSNLRNLINLRHLVVTYVDLIREMPLGIKELKCL--QMLSNFIVGMV-TGSRLKDLKDFKL 676 (1096)
Q Consensus 602 ~~L~~L~L~~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L--~~L~~~~~~~~-~~~~~~~L~~l~~ 676 (1096)
++|++|++++| .+..+ |..++++++|++|++++|. +.. ..++.+++| +.|........ .+.....+..+..
T Consensus 121 ~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~ 196 (562)
T 3a79_B 121 ASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT 196 (562)
T ss_dssp TTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE
T ss_pred ccCCEEECCCC-CccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccccccccCcccccccCc
Confidence 99999999996 56665 4789999999999999987 443 345556666 55543222110 1111111111110
Q ss_pred ccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCCeEEEeeeCCCC-CCcccCCccccceeEEeecCCCC-CC----CC
Q 043647 677 LRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKELTVKCYGGTV-FPSWMGDPLFSNIVLLRLEDCEK-CT----SL 750 (1096)
Q Consensus 677 L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~~~~L~~L~L~~~~~-~~----~l 750 (1096)
+ . + .+++..+.... .+.... ..+++|+.|++++|.. +. .+
T Consensus 197 -~-~------------------------------l-~l~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~l~~~~ 242 (562)
T 3a79_B 197 -T-V------------------------------L-HLVFHPNSLFSVQVNMSV-NALGHLQLSNIKLNDENCQRLMTFL 242 (562)
T ss_dssp -E-E------------------------------E-EEEECSSSCCCCCCEEEE-SSEEEEEEEEEECCSTTHHHHHHHH
T ss_pred -c-e------------------------------E-EEEecCccchhhhhhhcc-cccceEEEecccccccccchHHHHH
Confidence 0 0 0 12333332221 121111 1367788888887631 11 12
Q ss_pred CCCCCcCCcceeecccccceeEecccccCCCCCCCCCCCceecccCCCcCcccccCccCCcccccccccEEEEecCCCcC
Q 043647 751 PSLGLLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQALETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLC 830 (1096)
Q Consensus 751 ~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 830 (1096)
+.+..+++|+.|.+.++.- ... .+.+.......++|++|+++++.--........ ....++|+.|.+.++..-.
T Consensus 243 ~~l~~l~~L~~L~L~~~~l-~~~--~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~---~~~~~~L~~L~~~~~~~~~ 316 (562)
T 3a79_B 243 SELTRGPTLLNVTLQHIET-TWK--CSVKLFQFFWPRPVEYLNIYNLTITERIDREEF---TYSETALKSLMIEHVKNQV 316 (562)
T ss_dssp HHHHSCSSCEEEEEEEEEE-CHH--HHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCC---CCCSCSCCEEEEEEEEECC
T ss_pred HHHhccCcceEEEecCCcC-cHH--HHHHHHHhhhcccccEEEEeccEeeccccchhh---hcccccchheehhhcccce
Confidence 2455667777777765421 100 000000001134777887776542211110000 0012445555444432211
Q ss_pred ccCCC-------CCCCccEEEEecccCccccC-CCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccC
Q 043647 831 GRLPN-------HLPILEKLMIYECVQLVVSF-SSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDC 902 (1096)
Q Consensus 831 ~~~p~-------~l~~L~~L~l~~~~~l~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 902 (1096)
..+|. .-++|+.|.+.++......+ ..+++|+.|++++|.... .....+..+++|++|++++|
T Consensus 317 ~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~l~~L~~L~L~~N 387 (562)
T 3a79_B 317 FLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD---------SVFQGCSTLKRLQTLILQRN 387 (562)
T ss_dssp CSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT---------TTTTTCCSCSSCCEEECCSS
T ss_pred eecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcccc---------chhhhhcccCCCCEEECCCC
Confidence 12331 12468889998887554444 678999999999986432 23345678999999999998
Q ss_pred CCccc---chhhcCCCCCcCeEEEecCCCcCcCCCC-CCCCCCcCeEEEeCCCCCcccCCCCCCCCcCeEEEccCcCCcC
Q 043647 903 PKLES---IAERFHNNTSLGCIWIWKCENLKSLPEG-LPNLNSLHNIYVWDCPSLVSFPEGGLPNCSLSVTIGKCEKLKA 978 (1096)
Q Consensus 903 ~~l~~---l~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~ 978 (1096)
. ++. +|..+..+++|++|++++|.....+|.. +..+++|+.|++++|..-..+| ..++++|+.|++++| +++.
T Consensus 388 ~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~~L~~L~L~~N-~l~~ 464 (562)
T 3a79_B 388 G-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF-RCLPPKVKVLDLHNN-RIMS 464 (562)
T ss_dssp C-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG-SSCCTTCSEEECCSS-CCCC
T ss_pred C-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh-hhhcCcCCEEECCCC-cCcc
Confidence 6 554 3556889999999999997654447754 7889999999999976444444 355589999999997 6777
Q ss_pred CCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCC
Q 043647 979 LPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFP 1035 (1096)
Q Consensus 979 l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~ 1035 (1096)
+|. .+.++++|++|++++| .+..+|.. .+..+++|+.|++++++
T Consensus 465 ip~----------~~~~l~~L~~L~L~~N-~l~~l~~~--~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 465 IPK----------DVTHLQALQELNVASN-QLKSVPDG--VFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCT----------TTTSSCCCSEEECCSS-CCCCCCTT--STTTCTTCCCEECCSCC
T ss_pred cCh----------hhcCCCCCCEEECCCC-CCCCCCHH--HHhcCCCCCEEEecCCC
Confidence 764 5669999999999999 88899986 24678999999999965
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=2.4e-24 Score=252.48 Aligned_cols=138 Identities=17% Similarity=0.130 Sum_probs=94.3
Q ss_pred CCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCCCCcccCCCCCCCCcCeEEEc
Q 043647 892 RALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCPSLVSFPEGGLPNCSLSVTIG 971 (1096)
Q Consensus 892 ~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~ 971 (1096)
++|+.|++++|......+..+..+++|++|++++|......|..+..+++|++|++++| .++.++.
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~------------- 340 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDS------------- 340 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECG-------------
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-ccCCcCh-------------
Confidence 57888888887755555667778888888888886544444567777888888888875 3343321
Q ss_pred cCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCc
Q 043647 972 KCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFL 1051 (1096)
Q Consensus 972 ~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L 1051 (1096)
..+.++++|++|++++| .+..++.. .+..+++|++|++++ +.++.+|...+..+++|
T Consensus 341 -------------------~~~~~l~~L~~L~Ls~N-~l~~~~~~--~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 341 -------------------RMFENLDKLEVLDLSYN-HIRALGDQ--SFLGLPNLKELALDT-NQLKSVPDGIFDRLTSL 397 (455)
T ss_dssp -------------------GGGTTCTTCCEEECCSS-CCCEECTT--TTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTC
T ss_pred -------------------hHhcCcccCCEEECCCC-cccccChh--hccccccccEEECCC-CccccCCHhHhccCCcc
Confidence 14566778888888888 56655332 235677888888888 56777776667778888
Q ss_pred CeEeeccCCCCCCCC
Q 043647 1052 EYLQIRDCPKLTSFP 1066 (1096)
Q Consensus 1052 ~~L~l~~c~~l~~l~ 1066 (1096)
++|++++|+.-...|
T Consensus 398 ~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 398 QKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEEECCSSCBCCCTT
T ss_pred cEEEccCCCcccCCC
Confidence 888888855444444
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=9.6e-24 Score=244.64 Aligned_cols=96 Identities=20% Similarity=0.243 Sum_probs=79.9
Q ss_pred hcCCCCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCce
Q 043647 551 LLPKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRH 630 (1096)
Q Consensus 551 ~~~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 630 (1096)
.+.++++|++|++++|.++.+| .++.+++|++|++++|.++.+| ++.+++|++|++++| .+..+| ++.+++|++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTY 110 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCE
T ss_pred ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcCCE
Confidence 3556889999999999999887 6899999999999999999986 889999999999996 577776 889999999
Q ss_pred EEeccccccccCcccCCCCCCCCcC
Q 043647 631 LVVTYVDLIREMPLGIKELKCLQML 655 (1096)
Q Consensus 631 L~l~~~~~~~~~p~~i~~L~~L~~L 655 (1096)
|++++|. +..+| ++.+++|++|
T Consensus 111 L~L~~N~-l~~l~--~~~l~~L~~L 132 (457)
T 3bz5_A 111 LNCDTNK-LTKLD--VSQNPLLTYL 132 (457)
T ss_dssp EECCSSC-CSCCC--CTTCTTCCEE
T ss_pred EECCCCc-CCeec--CCCCCcCCEE
Confidence 9999987 55554 5555555554
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=1.9e-23 Score=244.72 Aligned_cols=330 Identities=20% Similarity=0.289 Sum_probs=253.0
Q ss_pred cCCCCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceE
Q 043647 552 LPKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHL 631 (1096)
Q Consensus 552 ~~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L 631 (1096)
+..+++|++|++++|.++.+|. ++++++|++|++++|.+..+|. +.++++|++|++++| .+..+|. +.++++|++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN-QITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEE
T ss_pred hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC-CCCCChH-HcCCCCCCEE
Confidence 5678999999999999999877 9999999999999999999987 999999999999996 6888876 9999999999
Q ss_pred EeccccccccCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCC
Q 043647 632 VVTYVDLIREMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSL 711 (1096)
Q Consensus 632 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L 711 (1096)
++++|. +..+| .++.+++|+.|... .. +.. ...+..+++|
T Consensus 140 ~l~~n~-l~~~~-~~~~l~~L~~L~l~-~~------~~~-------------------------------~~~~~~l~~L 179 (466)
T 1o6v_A 140 ELSSNT-ISDIS-ALSGLTSLQQLSFG-NQ------VTD-------------------------------LKPLANLTTL 179 (466)
T ss_dssp EEEEEE-ECCCG-GGTTCTTCSEEEEE-ES------CCC-------------------------------CGGGTTCTTC
T ss_pred ECCCCc-cCCCh-hhccCCcccEeecC-Cc------ccC-------------------------------chhhccCCCC
Confidence 999998 66665 47888888877531 00 000 1125567889
Q ss_pred CeEEEeeeCCCCCCcccCCccccceeEEeecCCCCCCCCCCCCCcCCcceeecccccceeEecccccCCCCCCCCCCCce
Q 043647 712 KELTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCTSLPSLGLLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQALET 791 (1096)
Q Consensus 712 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~ 791 (1096)
+.|+++++....++. +. .+++|+.|++++|.. ..++.++.+++|+.|+++++. ++.++
T Consensus 180 ~~L~l~~n~l~~~~~-l~--~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n~-l~~~~----------------- 237 (466)
T 1o6v_A 180 ERLDISSNKVSDISV-LA--KLTNLESLIATNNQI-SDITPLGILTNLDELSLNGNQ-LKDIG----------------- 237 (466)
T ss_dssp CEEECCSSCCCCCGG-GG--GCTTCSEEECCSSCC-CCCGGGGGCTTCCEEECCSSC-CCCCG-----------------
T ss_pred CEEECcCCcCCCChh-hc--cCCCCCEEEecCCcc-cccccccccCCCCEEECCCCC-cccch-----------------
Confidence 999999998777654 32 389999999999854 444557888899999998752 11110
Q ss_pred ecccCCCcCcccccCccCCcccccccccEEEEecCCCcCccCCCCCCCccEEEEecccCccccCCCCCCcceEEeccCCC
Q 043647 792 LCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLPNHLPILEKLMIYECVQLVVSFSSLPLLCKLEIDRCKG 871 (1096)
Q Consensus 792 L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~ 871 (1096)
....+++|+.|++++|.- . .++ .+..+++|+.|++++|..
T Consensus 238 -------------------~l~~l~~L~~L~l~~n~l-~-~~~-------------------~~~~l~~L~~L~l~~n~l 277 (466)
T 1o6v_A 238 -------------------TLASLTNLTDLDLANNQI-S-NLA-------------------PLSGLTKLTELKLGANQI 277 (466)
T ss_dssp -------------------GGGGCTTCSEEECCSSCC-C-CCG-------------------GGTTCTTCSEEECCSSCC
T ss_pred -------------------hhhcCCCCCEEECCCCcc-c-cch-------------------hhhcCCCCCEEECCCCcc
Confidence 034577888888888642 2 111 256788999999999864
Q ss_pred ccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCC
Q 043647 872 VACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCP 951 (1096)
Q Consensus 872 ~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 951 (1096)
... ..+..+++|+.|++++|. ++.++. +..+++|+.|++++|. +..++. +..+++|+.|++++|
T Consensus 278 ~~~-----------~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n- 341 (466)
T 1o6v_A 278 SNI-----------SPLAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNN- 341 (466)
T ss_dssp CCC-----------GGGTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSS-
T ss_pred Ccc-----------ccccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCCc-CCCchh-hccCccCCEeECCCC-
Confidence 331 126678999999999987 555554 7889999999999975 555543 778999999999996
Q ss_pred CCcccCCCCCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccc
Q 043647 952 SLVSFPEGGLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEE 1016 (1096)
Q Consensus 952 ~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~ 1016 (1096)
.++.++.....++|+.|++++|. ++.++ .+..+++|+.|++++| .+..+|..
T Consensus 342 ~l~~~~~l~~l~~L~~L~l~~n~-l~~~~-----------~~~~l~~L~~L~l~~n-~~~~~p~~ 393 (466)
T 1o6v_A 342 KVSDVSSLANLTNINWLSAGHNQ-ISDLT-----------PLANLTRITQLGLNDQ-AWTNAPVN 393 (466)
T ss_dssp CCCCCGGGTTCTTCCEEECCSSC-CCBCG-----------GGTTCTTCCEEECCCE-EEECCCBC
T ss_pred ccCCchhhccCCCCCEEeCCCCc-cCccc-----------hhhcCCCCCEEeccCC-cccCCchh
Confidence 56666654555899999999875 44433 3788999999999999 66666653
No 34
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=2.1e-23 Score=241.58 Aligned_cols=389 Identities=18% Similarity=0.158 Sum_probs=221.9
Q ss_pred hhhhcCCCCcceEEEecccccc-cCCCCcCCCCcc-------------ceeecccccccccccccccCCCCcEEeccCcc
Q 043647 548 LSNLLPKFTKLRVLSLKKYYIT-ELPHSIGDLKHL-------------RYINLSETMIRCLPESICSLCNLQFLILRGCY 613 (1096)
Q Consensus 548 ~~~~~~~~~~Lr~L~L~~~~~~-~lp~~i~~l~~L-------------r~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~ 613 (1096)
+|..+.++++|++|++++|.+. .+|..++++.+| ++|++++|.++.+|.. ..+|++|++++|
T Consensus 26 iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~---~~~L~~L~l~~n- 101 (454)
T 1jl5_A 26 MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL---PPHLESLVASCN- 101 (454)
T ss_dssp --------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC---CTTCSEEECCSS-
T ss_pred CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC---cCCCCEEEccCC-
Confidence 4556788899999999988876 678888888875 8899999888888773 468899999885
Q ss_pred cCcccCccccCCCCCceEEeccccccccCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCc
Q 043647 614 RLKKLPSNLRNLINLRHLVVTYVDLIREMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSR 693 (1096)
Q Consensus 614 ~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~ 693 (1096)
.+..+|.. +++|++|++++|. +..+|... ++|++|..... .+..
T Consensus 102 ~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~~---~~L~~L~L~~n------~l~~----------------------- 145 (454)
T 1jl5_A 102 SLTELPEL---PQSLKSLLVDNNN-LKALSDLP---PLLEYLGVSNN------QLEK----------------------- 145 (454)
T ss_dssp CCSSCCCC---CTTCCEEECCSSC-CSCCCSCC---TTCCEEECCSS------CCSS-----------------------
T ss_pred cCCccccc---cCCCcEEECCCCc-cCcccCCC---CCCCEEECcCC------CCCC-----------------------
Confidence 67778763 4788999998886 55554322 34555432110 0100
Q ss_pred chHHHHHHhhccCCCCCCCeEEEeeeCCCCCCcccCCccccceeEEeecCCCCCCCCCCCCCcCCcceeecccccceeEe
Q 043647 694 NEALEKNVLDMLQPHRSLKELTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCTSLPSLGLLGSLKNLTIKGMRRLKSI 773 (1096)
Q Consensus 694 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~ 773 (1096)
+..+..+++|+.|++++|....+|.+ ..+|+.|++++|. ++.+|.++.+++|+.|+++++. +..+
T Consensus 146 --------lp~~~~l~~L~~L~l~~N~l~~lp~~-----~~~L~~L~L~~n~-l~~l~~~~~l~~L~~L~l~~N~-l~~l 210 (454)
T 1jl5_A 146 --------LPELQNSSFLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQ-LEELPELQNLPFLTAIYADNNS-LKKL 210 (454)
T ss_dssp --------CCCCTTCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSC-CSSC
T ss_pred --------CcccCCCCCCCEEECCCCcCcccCCC-----cccccEEECcCCc-CCcCccccCCCCCCEEECCCCc-CCcC
Confidence 11255667888899988888877765 3589999999885 4557888899999999998763 3322
Q ss_pred cccccCCCCCCCCCCCceecccCCCcCcccccCccCCcccccccccEEEEecCCCcCccCCCCCCCccEEEEecccCccc
Q 043647 774 GFEIYGEGCSKPFQALETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLPNHLPILEKLMIYECVQLVV 853 (1096)
Q Consensus 774 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~ 853 (1096)
+ ...++|+.|+++++. +..+.. .+.+++|+.|++++| ++. .+|..+++|+.|++.+|.-..
T Consensus 211 ~---------~~~~~L~~L~l~~n~-l~~lp~------~~~l~~L~~L~l~~N-~l~-~l~~~~~~L~~L~l~~N~l~~- 271 (454)
T 1jl5_A 211 P---------DLPLSLESIVAGNNI-LEELPE------LQNLPFLTTIYADNN-LLK-TLPDLPPSLEALNVRDNYLTD- 271 (454)
T ss_dssp C---------CCCTTCCEEECCSSC-CSSCCC------CTTCTTCCEEECCSS-CCS-SCCSCCTTCCEEECCSSCCSC-
T ss_pred C---------CCcCcccEEECcCCc-CCcccc------cCCCCCCCEEECCCC-cCC-cccccccccCEEECCCCcccc-
Confidence 2 124588888888763 333321 567888999999886 444 577777888888888765321
Q ss_pred cCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCC
Q 043647 854 SFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLP 933 (1096)
Q Consensus 854 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp 933 (1096)
.-..+++|+.|++++|....+. ...++|+.|++++|. ++.++. -.++|++|++++| .++.+|
T Consensus 272 l~~~~~~L~~L~ls~N~l~~l~-------------~~~~~L~~L~l~~N~-l~~i~~---~~~~L~~L~Ls~N-~l~~lp 333 (454)
T 1jl5_A 272 LPELPQSLTFLDVSENIFSGLS-------------ELPPNLYYLNASSNE-IRSLCD---LPPSLEELNVSNN-KLIELP 333 (454)
T ss_dssp CCCCCTTCCEEECCSSCCSEES-------------CCCTTCCEEECCSSC-CSEECC---CCTTCCEEECCSS-CCSCCC
T ss_pred cCcccCcCCEEECcCCccCccc-------------CcCCcCCEEECcCCc-CCcccC---CcCcCCEEECCCC-cccccc
Confidence 1122467888888887533211 012578888888875 444431 1257888888884 456676
Q ss_pred CCCCCCCCcCeEEEeCCCCCcccCCCCCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCcccc
Q 043647 934 EGLPNLNSLHNIYVWDCPSLVSFPEGGLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSF 1013 (1096)
Q Consensus 934 ~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l 1013 (1096)
.. +++|+.|++++| .++.+|. .+++|+.|+++++. ++.++. .+ .++..| +.|.....+
T Consensus 334 ~~---~~~L~~L~L~~N-~l~~lp~--~l~~L~~L~L~~N~-l~~l~~-------ip------~~l~~L--~~n~~~~~i 391 (454)
T 1jl5_A 334 AL---PPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYNP-LREFPD-------IP------ESVEDL--RMNSHLAEV 391 (454)
T ss_dssp CC---CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CSSCCC-------CC------TTCCEE--ECCC-----
T ss_pred cc---CCcCCEEECCCC-ccccccc--hhhhccEEECCCCC-CCcCCC-------Ch------HHHHhh--hhccccccc
Confidence 54 477888888874 5667775 56778888887753 333221 00 112222 233344445
Q ss_pred ccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCC
Q 043647 1014 PEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPK 1061 (1096)
Q Consensus 1014 ~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~ 1061 (1096)
|. .+++|+.|++++ +.++.+| .+. ++|+.|.+.+|..
T Consensus 392 ~~------~~~~L~~L~ls~-N~l~~~~--~iP--~sl~~L~~~~~~~ 428 (454)
T 1jl5_A 392 PE------LPQNLKQLHVET-NPLREFP--DIP--ESVEDLRMNSERV 428 (454)
T ss_dssp ------------------------------------------------
T ss_pred cc------ccCcCCEEECCC-CcCCccc--cch--hhHhheeCcCccc
Confidence 53 357888888888 4455432 111 4567777777643
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=1.3e-22 Score=235.18 Aligned_cols=77 Identities=22% Similarity=0.228 Sum_probs=64.2
Q ss_pred CCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceEEeccccccccCcccCCCCCC
Q 043647 572 PHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLVVTYVDLIREMPLGIKELKC 651 (1096)
Q Consensus 572 p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~ 651 (1096)
+..++++++|++|++++|.++.+| .+..+++|++|++++| .+..+| ++.+++|++|++++|. +..+| ++.+++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~ 107 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTK 107 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTT
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCc
Confidence 346778999999999999999987 7999999999999996 688886 8999999999999987 55554 556665
Q ss_pred CCcC
Q 043647 652 LQML 655 (1096)
Q Consensus 652 L~~L 655 (1096)
|++|
T Consensus 108 L~~L 111 (457)
T 3bz5_A 108 LTYL 111 (457)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 5555
No 36
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=7.5e-23 Score=239.72 Aligned_cols=358 Identities=16% Similarity=0.131 Sum_probs=190.8
Q ss_pred CcceEEEecccccccC-CCCcCCCCccceeeccccccc-cc-ccccccCCCCcEEeccCcccCcccCccccCCCCCceEE
Q 043647 556 TKLRVLSLKKYYITEL-PHSIGDLKHLRYINLSETMIR-CL-PESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLV 632 (1096)
Q Consensus 556 ~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~-~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 632 (1096)
++|++|++++|.++.+ |..|+++++|++|++++|.+. .+ |..+.++++|++|+|++|......|..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 6788888888888766 677888888888888888775 44 45678888888888888643333466778888888888
Q ss_pred eccccccccCccc--CCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCC
Q 043647 633 VTYVDLIREMPLG--IKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRS 710 (1096)
Q Consensus 633 l~~~~~~~~~p~~--i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~ 710 (1096)
+++|.....+|.. ++.+++|++|...... +..+. ....+..+++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~------l~~~~----------------------------~~~~~~~l~~ 155 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN------IKKIQ----------------------------PASFFLNMRR 155 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSB------CCSCC----------------------------CCGGGGGCTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCc------cCccC----------------------------cccccCCCCc
Confidence 8887732223333 5556666555321110 00000 0001233455
Q ss_pred CCeEEEeeeCCCCC-CcccCCccccceeEEeecCCCCCCCCCC----------CCCcCCcceeecccccceeEecccccC
Q 043647 711 LKELTVKCYGGTVF-PSWMGDPLFSNIVLLRLEDCEKCTSLPS----------LGLLGSLKNLTIKGMRRLKSIGFEIYG 779 (1096)
Q Consensus 711 L~~L~l~~~~~~~~-p~~~~~~~~~~L~~L~L~~~~~~~~l~~----------l~~l~~L~~L~L~~~~~l~~~~~~~~~ 779 (1096)
|+.|++++|..... |.++......+|+.|++++|.... ++. +..+++|+.|+++++......+..+..
T Consensus 156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD-MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234 (455)
T ss_dssp CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTT-CSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred ccEEeCCCCcccccChhhhhccccccccccccccCcccc-cchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence 56666655554433 222222112456666666553321 111 123344555555543211111100000
Q ss_pred CCCCCCCCCCceecccCCCcCcccccCccCCcccccccccEEEEecCCCcCccCC-CCCCCccEEEEecccCccccCC--
Q 043647 780 EGCSKPFQALETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLP-NHLPILEKLMIYECVQLVVSFS-- 856 (1096)
Q Consensus 780 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p-~~l~~L~~L~l~~~~~l~~~~~-- 856 (1096)
....++|+.|++++|......+. ..++.+. . ..+.
T Consensus 235 --------------------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--------~--~~~~~~ 272 (455)
T 3v47_A 235 --------------------------------AIAGTKIQSLILSNSYNMGSSFGHTNFKDPD--------N--FTFKGL 272 (455)
T ss_dssp --------------------------------HTTTCCEEEEECTTCTTTSCCTTCCSSCCCC--------T--TTTGGG
T ss_pred --------------------------------cccccceeeEeeccccccccccchhhhccCc--------c--cccccc
Confidence 01124555555555433221000 0000000 0 0111
Q ss_pred CCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCCCCC
Q 043647 857 SLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLPEGL 936 (1096)
Q Consensus 857 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l 936 (1096)
..++|+.|++++|.... .....+..+++|++|++++|......+..+..+++|++|++++|......|..+
T Consensus 273 ~~~~L~~L~l~~n~l~~---------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 273 EASGVKTCDLSKSKIFA---------LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp TTSCCCEEECCSSCCCE---------ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred cccCceEEEecCccccc---------cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHh
Confidence 23567777777775332 234456677788888888876444445667778888888888864333335567
Q ss_pred CCCCCcCeEEEeCCCCCcccCCCCCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccc
Q 043647 937 PNLNSLHNIYVWDCPSLVSFPEGGLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEE 1016 (1096)
Q Consensus 937 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~ 1016 (1096)
..+++|++|++++|. ++.++.. .+.++++|++|++++| .+..+|..
T Consensus 344 ~~l~~L~~L~Ls~N~-l~~~~~~--------------------------------~~~~l~~L~~L~L~~N-~l~~~~~~ 389 (455)
T 3v47_A 344 ENLDKLEVLDLSYNH-IRALGDQ--------------------------------SFLGLPNLKELALDTN-QLKSVPDG 389 (455)
T ss_dssp TTCTTCCEEECCSSC-CCEECTT--------------------------------TTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred cCcccCCEEECCCCc-ccccChh--------------------------------hccccccccEEECCCC-ccccCCHh
Confidence 778888888888753 3433221 3445566666666665 55555543
Q ss_pred cccCcCCCCccEEEeccCC
Q 043647 1017 EIGMTFPSSLTELVIVRFP 1035 (1096)
Q Consensus 1017 ~~~~~~~~sL~~L~l~~c~ 1035 (1096)
. +..+++|+.|++++++
T Consensus 390 ~--~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 390 I--FDRLTSLQKIWLHTNP 406 (455)
T ss_dssp T--TTTCTTCCEEECCSSC
T ss_pred H--hccCCcccEEEccCCC
Confidence 2 2445566666666643
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.4e-21 Score=230.11 Aligned_cols=158 Identities=15% Similarity=0.111 Sum_probs=110.6
Q ss_pred CCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCCCCcccCCC--CCCCCc
Q 043647 888 FKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCPSLVSFPEG--GLPNCS 965 (1096)
Q Consensus 888 l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L 965 (1096)
+..+++|+.|++++|......+..+..+++|+.|++++|+.+..+|.......+|++|++++| .++.+|.. ...++|
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTC
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHhcCcccc
Confidence 456778999999998744434456788899999999998888888877777778999999885 46666532 223677
Q ss_pred CeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCC
Q 043647 966 LSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGF 1045 (1096)
Q Consensus 966 ~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l 1045 (1096)
+.|+++++. ++.++. ..+.++++|++|++++| .+..++.. .|..+++|+.|++++ +.++.++...|
T Consensus 251 ~~L~Ls~n~-l~~~~~---------~~~~~l~~L~~L~L~~n-~l~~~~~~--~~~~l~~L~~L~L~~-N~l~~~~~~~~ 316 (477)
T 2id5_A 251 RFLNLSYNP-ISTIEG---------SMLHELLRLQEIQLVGG-QLAVVEPY--AFRGLNYLRVLNVSG-NQLTTLEESVF 316 (477)
T ss_dssp CEEECCSSC-CCEECT---------TSCTTCTTCCEEECCSS-CCSEECTT--TBTTCTTCCEEECCS-SCCSCCCGGGB
T ss_pred CeeECCCCc-CCccCh---------hhccccccCCEEECCCC-ccceECHH--HhcCcccCCEEECCC-CcCceeCHhHc
Confidence 778877754 333321 24667777888888877 55555432 235677788888877 46777776667
Q ss_pred CCCCCcCeEeeccCC
Q 043647 1046 RNLAFLEYLQIRDCP 1060 (1096)
Q Consensus 1046 ~~l~~L~~L~l~~c~ 1060 (1096)
..+++|++|++++++
T Consensus 317 ~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 317 HSVGNLETLILDSNP 331 (477)
T ss_dssp SCGGGCCEEECCSSC
T ss_pred CCCcccCEEEccCCC
Confidence 777778888887744
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=1.8e-22 Score=227.03 Aligned_cols=304 Identities=17% Similarity=0.173 Sum_probs=182.4
Q ss_pred CCCCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceEE
Q 043647 553 PKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLV 632 (1096)
Q Consensus 553 ~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 632 (1096)
..+++|+.|+++++.+..+|. +..+++|++|++++|.++.+|. +.++++|++|++++| .+..+| .+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEE
Confidence 356788888888888888764 7888889999998888888877 888888999999886 677776 488888899999
Q ss_pred eccccccccCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCC
Q 043647 633 VTYVDLIREMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLK 712 (1096)
Q Consensus 633 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 712 (1096)
+++|. +..+|. +..+++|++|....... .. ....+..+++|+
T Consensus 117 l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~-----~~-------------------------------~~~~~~~l~~L~ 158 (347)
T 4fmz_A 117 LNEDN-ISDISP-LANLTKMYSLNLGANHN-----LS-------------------------------DLSPLSNMTGLN 158 (347)
T ss_dssp CTTSC-CCCCGG-GTTCTTCCEEECTTCTT-----CC-------------------------------CCGGGTTCTTCC
T ss_pred CcCCc-ccCchh-hccCCceeEEECCCCCC-----cc-------------------------------cccchhhCCCCc
Confidence 88887 555554 66666666653211100 00 011134455666
Q ss_pred eEEEeeeCCCCCCcccCCccccceeEEeecCCCCCCCCCCCCCcCCcceeecccccceeEecccccCCCCCCCCCCCcee
Q 043647 713 ELTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCTSLPSLGLLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQALETL 792 (1096)
Q Consensus 713 ~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L 792 (1096)
.|+++++.....+. +. .+++|+.|++++|. +..++.+..+++|+.|++.++ .+..+.. ...+++|+.|
T Consensus 159 ~L~l~~~~~~~~~~-~~--~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n-~l~~~~~-------~~~~~~L~~L 226 (347)
T 4fmz_A 159 YLTVTESKVKDVTP-IA--NLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVN-QITDITP-------VANMTRLNSL 226 (347)
T ss_dssp EEECCSSCCCCCGG-GG--GCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSS-CCCCCGG-------GGGCTTCCEE
T ss_pred EEEecCCCcCCchh-hc--cCCCCCEEEccCCc-ccccccccCCCccceeecccC-CCCCCch-------hhcCCcCCEE
Confidence 67776666555544 22 25667777777663 334444566666666666653 2221111 1123444444
Q ss_pred cccCCCcCcccccCccCCcccccccccEEEEecCCCcCccCCCCCCCccEEEEecccCccccCCCCCCcceEEeccCCCc
Q 043647 793 CFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLPNHLPILEKLMIYECVQLVVSFSSLPLLCKLEIDRCKGV 872 (1096)
Q Consensus 793 ~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~ 872 (1096)
+++++.- ..... ...+++|+.|++++|. +. . ...+..+++|+.|++++|...
T Consensus 227 ~l~~n~l-~~~~~------~~~l~~L~~L~l~~n~-l~-------------------~-~~~~~~l~~L~~L~l~~n~l~ 278 (347)
T 4fmz_A 227 KIGNNKI-TDLSP------LANLSQLTWLEIGTNQ-IS-------------------D-INAVKDLTKLKMLNVGSNQIS 278 (347)
T ss_dssp ECCSSCC-CCCGG------GTTCTTCCEEECCSSC-CC-------------------C-CGGGTTCTTCCEEECCSSCCC
T ss_pred EccCCcc-CCCcc------hhcCCCCCEEECCCCc-cC-------------------C-ChhHhcCCCcCEEEccCCccC
Confidence 4433221 11000 2233344444444331 11 0 123556677777777777432
Q ss_pred cccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCC
Q 043647 873 ACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCP 951 (1096)
Q Consensus 873 ~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 951 (1096)
. ...+..+++|+.|++++|......+..+..+++|++|++++|+ ++.++. +..+++|++|++++|+
T Consensus 279 ~-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 279 D-----------ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp C-----------CGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred C-----------ChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 2 1235567778888888776544555667777788888888765 444443 6677777777777754
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=3e-22 Score=225.23 Aligned_cols=126 Identities=20% Similarity=0.330 Sum_probs=88.9
Q ss_pred cCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceEEeccccccccCcccCCCCCCCCc
Q 043647 575 IGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLVVTYVDLIREMPLGIKELKCLQM 654 (1096)
Q Consensus 575 i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 654 (1096)
+..+++|++|+++++.+..+|. +..+++|++|++++| .+..+|. +..+++|++|++++|. +..+| .++.+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l----- 109 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNL----- 109 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTC-----
T ss_pred chhcccccEEEEeCCccccchh-hhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCC-----
Confidence 4578899999999999999875 889999999999996 6888887 9999999999999886 44432 23333
Q ss_pred CCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCCeEEEeeeCCCCCCcccCCcccc
Q 043647 655 LSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKELTVKCYGGTVFPSWMGDPLFS 734 (1096)
Q Consensus 655 L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~ 734 (1096)
++|+.|+++++....+|. +. .++
T Consensus 110 ------------------------------------------------------~~L~~L~l~~n~i~~~~~-~~--~l~ 132 (347)
T 4fmz_A 110 ------------------------------------------------------TNLRELYLNEDNISDISP-LA--NLT 132 (347)
T ss_dssp ------------------------------------------------------TTCSEEECTTSCCCCCGG-GT--TCT
T ss_pred ------------------------------------------------------CcCCEEECcCCcccCchh-hc--cCC
Confidence 344445555554444443 22 266
Q ss_pred ceeEEeecCCCCCCCCCCCCCcCCcceeecccc
Q 043647 735 NIVLLRLEDCEKCTSLPSLGLLGSLKNLTIKGM 767 (1096)
Q Consensus 735 ~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~ 767 (1096)
+|+.|++++|.....++.+..+++|+.|+++++
T Consensus 133 ~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 133 KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES 165 (347)
T ss_dssp TCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS
T ss_pred ceeEEECCCCCCcccccchhhCCCCcEEEecCC
Confidence 777777777765555556666666666666654
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=8.6e-22 Score=225.21 Aligned_cols=89 Identities=19% Similarity=0.372 Sum_probs=67.5
Q ss_pred CCcceEEEecccccccCCCC-cCCCCccceeeccccccccccc-ccccCCCCcEEeccCcccCcccC-ccccCCCCCceE
Q 043647 555 FTKLRVLSLKKYYITELPHS-IGDLKHLRYINLSETMIRCLPE-SICSLCNLQFLILRGCYRLKKLP-SNLRNLINLRHL 631 (1096)
Q Consensus 555 ~~~Lr~L~L~~~~~~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L 631 (1096)
++++++|+++++.++.+|.. +..+++|++|++++|.+..+|. .+..+++|++|++++| .+..+| ..++++++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEE
Confidence 56788888888888888765 4778888888888888887754 7888888888888886 455554 446888888888
Q ss_pred EeccccccccCccc
Q 043647 632 VVTYVDLIREMPLG 645 (1096)
Q Consensus 632 ~l~~~~~~~~~p~~ 645 (1096)
++++|. +..+|.+
T Consensus 123 ~L~~n~-l~~l~~~ 135 (390)
T 3o6n_A 123 VLERND-LSSLPRG 135 (390)
T ss_dssp ECCSSC-CCCCCTT
T ss_pred ECCCCc-cCcCCHH
Confidence 888876 5555544
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=3e-21 Score=233.04 Aligned_cols=301 Identities=15% Similarity=0.152 Sum_probs=176.9
Q ss_pred CCcceEEEecccccccCCCC-cCCCCccceeeccccccccccc-ccccCCCCcEEeccCcccCcccCcc-ccCCCCCceE
Q 043647 555 FTKLRVLSLKKYYITELPHS-IGDLKHLRYINLSETMIRCLPE-SICSLCNLQFLILRGCYRLKKLPSN-LRNLINLRHL 631 (1096)
Q Consensus 555 ~~~Lr~L~L~~~~~~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L 631 (1096)
+.++++|+++++.+..+|.. +.++++|++|+|++|.+..+|+ .++.+.+|++|+|++| .+..+|.. ++++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEE
Confidence 56788888888888888765 4778888888888888887754 7888888888888886 46665544 5888888888
Q ss_pred EeccccccccCcccC-CCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCC
Q 043647 632 VVTYVDLIREMPLGI-KELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRS 710 (1096)
Q Consensus 632 ~l~~~~~~~~~p~~i-~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~ 710 (1096)
++++|. +..+|..+ +.+++
T Consensus 129 ~L~~n~-l~~l~~~~~~~l~~----------------------------------------------------------- 148 (597)
T 3oja_B 129 VLERND-LSSLPRGIFHNTPK----------------------------------------------------------- 148 (597)
T ss_dssp ECCSSC-CCCCCTTTTTTCTT-----------------------------------------------------------
T ss_pred EeeCCC-CCCCCHHHhccCCC-----------------------------------------------------------
Confidence 888876 55555442 33333
Q ss_pred CCeEEEeeeCCCCCCc-ccCCccccceeEEeecCCCCCCCCCCCCCcCCcceeecccccceeEecccccCCCCCCCCCCC
Q 043647 711 LKELTVKCYGGTVFPS-WMGDPLFSNIVLLRLEDCEKCTSLPSLGLLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQAL 789 (1096)
Q Consensus 711 L~~L~l~~~~~~~~p~-~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L 789 (1096)
|+.|++++|....++. ++.. +++|+.|++++|.. ..+ .++.+++|+.|+++++ .+..
T Consensus 149 L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~N~l-~~~-~~~~l~~L~~L~l~~n-~l~~----------------- 206 (597)
T 3oja_B 149 LTTLSMSNNNLERIEDDTFQA--TTSLQNLQLSSNRL-THV-DLSLIPSLFHANVSYN-LLST----------------- 206 (597)
T ss_dssp CCEEECCSSCCCBCCTTTTTT--CTTCCEEECTTSCC-SBC-CGGGCTTCSEEECCSS-CCSE-----------------
T ss_pred CCEEEeeCCcCCCCChhhhhc--CCcCcEEECcCCCC-CCc-ChhhhhhhhhhhcccC-cccc-----------------
Confidence 3333344333333222 2222 45556666655532 222 2334445555554432 1110
Q ss_pred ceecccCCCcCcccccCccCCcccccccccEEEEecCCCcCccCCCCCCCccEEEEecccCccccCCCCCCcceEEeccC
Q 043647 790 ETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLPNHLPILEKLMIYECVQLVVSFSSLPLLCKLEIDRC 869 (1096)
Q Consensus 790 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~ 869 (1096)
....++|+.|++++|. +. .+| ....++|+.|++++|
T Consensus 207 ----------------------l~~~~~L~~L~ls~n~-l~-~~~--------------------~~~~~~L~~L~L~~n 242 (597)
T 3oja_B 207 ----------------------LAIPIAVEELDASHNS-IN-VVR--------------------GPVNVELTILKLQHN 242 (597)
T ss_dssp ----------------------EECCTTCSEEECCSSC-CC-EEE--------------------CSCCSCCCEEECCSS
T ss_pred ----------------------ccCCchhheeeccCCc-cc-ccc--------------------cccCCCCCEEECCCC
Confidence 1223445566655542 11 111 111246666777666
Q ss_pred CCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeC
Q 043647 870 KGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWD 949 (1096)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 949 (1096)
.... ...+..+++|+.|+|++|......|..+..+++|+.|++++| .+..+|..+..+++|+.|+|++
T Consensus 243 ~l~~-----------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 243 NLTD-----------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSH 310 (597)
T ss_dssp CCCC-----------CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCS
T ss_pred CCCC-----------ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCC
Confidence 4322 134556777888888877654445667777888888888774 5666776666777888888877
Q ss_pred CCCCcccCCC-CCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCC
Q 043647 950 CPSLVSFPEG-GLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCP 1008 (1096)
Q Consensus 950 c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~ 1008 (1096)
| .+..+|.. ...++|+.|++++|. +..+ .+..+++|+.|++++|+
T Consensus 311 N-~l~~i~~~~~~l~~L~~L~L~~N~-l~~~------------~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 311 N-HLLHVERNQPQFDRLENLYLDHNS-IVTL------------KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp S-CCCCCGGGHHHHTTCSEEECCSSC-CCCC------------CCCTTCCCSEEECCSSC
T ss_pred C-CCCccCcccccCCCCCEEECCCCC-CCCc------------ChhhcCCCCEEEeeCCC
Confidence 5 34455431 112555555555543 2222 24455666666666663
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=7.4e-21 Score=223.93 Aligned_cols=294 Identities=22% Similarity=0.247 Sum_probs=174.4
Q ss_pred CcceEEEecccccccC-CCCcCCCCccceeeccccccccc-ccccccCCCCcEEeccCcccCcccCcc-ccCCCCCceEE
Q 043647 556 TKLRVLSLKKYYITEL-PHSIGDLKHLRYINLSETMIRCL-PESICSLCNLQFLILRGCYRLKKLPSN-LRNLINLRHLV 632 (1096)
Q Consensus 556 ~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~ 632 (1096)
+++++|+|++|.++.+ |..|.++++|++|+|++|.+..+ |..+.++++|++|+|++| .+..+|.. +.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEE
Confidence 5788889998888877 56788888999999998888877 678888889999999885 67777765 57888899999
Q ss_pred eccccccccCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCC
Q 043647 633 VTYVDLIREMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLK 712 (1096)
Q Consensus 633 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 712 (1096)
+++|......|..+..+++|++|..... .+.. .....+..+++|+
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n------~l~~-----------------------------~~~~~~~~l~~L~ 155 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDN------DLVY-----------------------------ISHRAFSGLNSLE 155 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCT------TCCE-----------------------------ECTTSSTTCTTCC
T ss_pred CCCCccccCChhHccccccCCEEECCCC------ccce-----------------------------eChhhccCCCCCC
Confidence 8888743334455666666666532110 0000 0011233345555
Q ss_pred eEEEeeeCCCCCCcc-cCCccccceeEEeecCCCCCCCCC-CCCCcCCcceeecccccceeEecccccCCCCCCCCCCCc
Q 043647 713 ELTVKCYGGTVFPSW-MGDPLFSNIVLLRLEDCEKCTSLP-SLGLLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQALE 790 (1096)
Q Consensus 713 ~L~l~~~~~~~~p~~-~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~ 790 (1096)
.|+++++....+|.. +.. +++|+.|++++|......+ .+..+++|+.|+++++..+..++..
T Consensus 156 ~L~l~~n~l~~~~~~~l~~--l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------- 219 (477)
T 2id5_A 156 QLTLEKCNLTSIPTEALSH--LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN-------------- 219 (477)
T ss_dssp EEEEESCCCSSCCHHHHTT--CTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT--------------
T ss_pred EEECCCCcCcccChhHhcc--cCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc--------------
Confidence 555555555444432 221 4455555555543222111 2344444444444443322222110
Q ss_pred eecccCCCcCcccccCccCCcccccccccEEEEecCCCcCccCCCCCCCccEEEEecccCccccCCCCCCcceEEeccCC
Q 043647 791 TLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLPNHLPILEKLMIYECVQLVVSFSSLPLLCKLEIDRCK 870 (1096)
Q Consensus 791 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~ 870 (1096)
.....+|+.|++++|. +. .+| ...+..+++|+.|++++|.
T Consensus 220 ---------------------~~~~~~L~~L~l~~n~-l~-~~~-----------------~~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 220 ---------------------CLYGLNLTSLSITHCN-LT-AVP-----------------YLAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp ---------------------TTTTCCCSEEEEESSC-CC-SCC-----------------HHHHTTCTTCCEEECCSSC
T ss_pred ---------------------cccCccccEEECcCCc-cc-ccC-----------------HHHhcCccccCeeECCCCc
Confidence 1112245555555542 22 122 0135566777777777774
Q ss_pred CccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCCC-CCCCCCCcCeEEEeC
Q 043647 871 GVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLPE-GLPNLNSLHNIYVWD 949 (1096)
Q Consensus 871 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~ 949 (1096)
.. .+....+..+++|+.|+|++|......+..+..+++|+.|++++| .++.+|. .+..+++|+.|++++
T Consensus 260 l~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 260 IS---------TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp CC---------EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCS
T ss_pred CC---------ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccC
Confidence 32 233445667778888888887644444667778888888888885 4555553 456778888888887
Q ss_pred CC
Q 043647 950 CP 951 (1096)
Q Consensus 950 c~ 951 (1096)
++
T Consensus 330 N~ 331 (477)
T 2id5_A 330 NP 331 (477)
T ss_dssp SC
T ss_pred CC
Confidence 55
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=1.5e-20 Score=214.92 Aligned_cols=303 Identities=15% Similarity=0.134 Sum_probs=180.6
Q ss_pred CcCceeecccchhhhhhhhccchhhhhhhhcCCCCcceEEEecccccccCC-CCcCCCCccceeecccccccccc-cccc
Q 043647 522 VEHLRTFLPVLSYEIRLLTRYITDVVLSNLLPKFTKLRVLSLKKYYITELP-HSIGDLKHLRYINLSETMIRCLP-ESIC 599 (1096)
Q Consensus 522 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~ 599 (1096)
+.+++.+.... +....+++..|..+++|++|++++|.++.++ ..|..+++|++|++++|.+..+| ..+.
T Consensus 44 l~~l~~l~l~~---------~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 44 LNNQKIVTFKN---------STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp GCCCSEEEEES---------CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCceEEEecC---------CchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence 45666665443 1223345566788999999999999999885 58999999999999999999885 4689
Q ss_pred cCCCCcEEeccCcccCcccCccc-cCCCCCceEEeccccccccCc-ccCCCCCCCCcCCceEecccCCCCcccccccccc
Q 043647 600 SLCNLQFLILRGCYRLKKLPSNL-RNLINLRHLVVTYVDLIREMP-LGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLL 677 (1096)
Q Consensus 600 ~L~~L~~L~L~~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L 677 (1096)
++++|++|++++| .+..+|..+ .++++|++|++++|. +..++ ..++.+++|++|.
T Consensus 115 ~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~--------------------- 171 (390)
T 3o6n_A 115 NVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQ--------------------- 171 (390)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEE---------------------
T ss_pred CCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEE---------------------
Confidence 9999999999996 788999875 899999999999998 45543 3466666655553
Q ss_pred cceEEEeecCCCCCCcchHHHHHHhhccCCCCCCCeEEEeeeCCCCCCcccCCccccceeEEeecCCCCCCCCCCCCCcC
Q 043647 678 RGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKELTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCTSLPSLGLLG 757 (1096)
Q Consensus 678 ~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~ 757 (1096)
++++....++. ..+++|+.|++++|.. ..+...+
T Consensus 172 --------------------------------------l~~n~l~~~~~----~~l~~L~~L~l~~n~l----~~~~~~~ 205 (390)
T 3o6n_A 172 --------------------------------------LSSNRLTHVDL----SLIPSLFHANVSYNLL----STLAIPI 205 (390)
T ss_dssp --------------------------------------CCSSCCSBCCG----GGCTTCSEEECCSSCC----SEEECCS
T ss_pred --------------------------------------CCCCcCCcccc----ccccccceeecccccc----cccCCCC
Confidence 33222222211 1144555555554421 1122234
Q ss_pred CcceeecccccceeEecccccCCCCCCCCCCCceecccCCCcCcccccCccCCcccccccccEEEEecCCCcCccCCCCC
Q 043647 758 SLKNLTIKGMRRLKSIGFEIYGEGCSKPFQALETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLPNHL 837 (1096)
Q Consensus 758 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l 837 (1096)
+|+.|+++++ .+..++. ..+++|+.|.+.++.- .... ....+++|+.|++++|. +.+..|
T Consensus 206 ~L~~L~l~~n-~l~~~~~--------~~~~~L~~L~l~~n~l-~~~~------~l~~l~~L~~L~Ls~n~-l~~~~~--- 265 (390)
T 3o6n_A 206 AVEELDASHN-SINVVRG--------PVNVELTILKLQHNNL-TDTA------WLLNYPGLVEVDLSYNE-LEKIMY--- 265 (390)
T ss_dssp SCSEEECCSS-CCCEEEC--------CCCSSCCEEECCSSCC-CCCG------GGGGCTTCSEEECCSSC-CCEEES---
T ss_pred cceEEECCCC-eeeeccc--------cccccccEEECCCCCC-cccH------HHcCCCCccEEECCCCc-CCCcCh---
Confidence 5555555543 2222211 1134444444443321 1110 13345556666665542 211111
Q ss_pred CCccEEEEecccCccccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCC
Q 043647 838 PILEKLMIYECVQLVVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTS 917 (1096)
Q Consensus 838 ~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~ 917 (1096)
..+..+++|+.|++++|..... ...+..+++|++|++++|. ++.+|..+..+++
T Consensus 266 ---------------~~~~~l~~L~~L~L~~n~l~~~----------~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~ 319 (390)
T 3o6n_A 266 ---------------HPFVKMQRLERLYISNNRLVAL----------NLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDR 319 (390)
T ss_dssp ---------------GGGTTCSSCCEEECCSSCCCEE----------ECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTT
T ss_pred ---------------hHccccccCCEEECCCCcCccc----------CcccCCCCCCCEEECCCCc-ceecCccccccCc
Confidence 2345566666666666643221 1122456667777777764 4556655666667
Q ss_pred cCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCC
Q 043647 918 LGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCP 951 (1096)
Q Consensus 918 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 951 (1096)
|+.|++++|+ ++.+| +..+++|+.|++++++
T Consensus 320 L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 320 LENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred CCEEECCCCc-cceeC--chhhccCCEEEcCCCC
Confidence 7777777643 44443 5566667777766643
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=8e-21 Score=210.42 Aligned_cols=139 Identities=19% Similarity=0.309 Sum_probs=111.6
Q ss_pred CCCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceEEe
Q 043647 554 KFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLVV 633 (1096)
Q Consensus 554 ~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l 633 (1096)
....++.|++++|.++.+|..++++++|++|+|++|.+..+|..++++.+|++|+|++| .+..+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 45789999999999999999999999999999999999999999999999999999996 67799999999999999999
Q ss_pred ccccccccCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCCe
Q 043647 634 TYVDLIREMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKE 713 (1096)
Q Consensus 634 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 713 (1096)
++|.....+|..++... ....+..+++|+.
T Consensus 158 ~~n~~~~~~p~~~~~~~--------------------------------------------------~~~~~~~l~~L~~ 187 (328)
T 4fcg_A 158 RACPELTELPEPLASTD--------------------------------------------------ASGEHQGLVNLQS 187 (328)
T ss_dssp EEETTCCCCCSCSEEEC---------------------------------------------------CCCEEESTTCCE
T ss_pred CCCCCccccChhHhhcc--------------------------------------------------chhhhccCCCCCE
Confidence 99887777776554310 0011233567778
Q ss_pred EEEeeeCCCCCCcccCCccccceeEEeecCCC
Q 043647 714 LTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCE 745 (1096)
Q Consensus 714 L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~ 745 (1096)
|++++|....+|.++.. +++|+.|++++|.
T Consensus 188 L~L~~n~l~~lp~~l~~--l~~L~~L~L~~N~ 217 (328)
T 4fcg_A 188 LRLEWTGIRSLPASIAN--LQNLKSLKIRNSP 217 (328)
T ss_dssp EEEEEECCCCCCGGGGG--CTTCCEEEEESSC
T ss_pred EECcCCCcCcchHhhcC--CCCCCEEEccCCC
Confidence 88888877777766543 5666666666653
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=3.9e-20 Score=223.36 Aligned_cols=289 Identities=16% Similarity=0.149 Sum_probs=185.4
Q ss_pred hhhhhhhcCCCCcceEEEecccccccCC-CCcCCCCccceeeccccccccccc-ccccCCCCcEEeccCcccCcccCccc
Q 043647 545 DVVLSNLLPKFTKLRVLSLKKYYITELP-HSIGDLKHLRYINLSETMIRCLPE-SICSLCNLQFLILRGCYRLKKLPSNL 622 (1096)
Q Consensus 545 ~~~~~~~~~~~~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i 622 (1096)
..+++..|..+++|++|+|++|.+..+| ..|+.+++|++|+|++|.+..+|+ .++++++|++|+|++| .+..+|..+
T Consensus 64 ~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~ 142 (597)
T 3oja_B 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGI 142 (597)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHH
Confidence 3456667888999999999999999885 589999999999999999998865 5799999999999996 788888875
Q ss_pred -cCCCCCceEEeccccccccCc-ccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHH
Q 043647 623 -RNLINLRHLVVTYVDLIREMP-LGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKN 700 (1096)
Q Consensus 623 -~~l~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~ 700 (1096)
+++++|++|++++|. +..++ ..++.+++|++|.
T Consensus 143 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~-------------------------------------------- 177 (597)
T 3oja_B 143 FHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQ-------------------------------------------- 177 (597)
T ss_dssp TTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEE--------------------------------------------
T ss_pred hccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEE--------------------------------------------
Confidence 899999999999998 45544 3567776666663
Q ss_pred HhhccCCCCCCCeEEEeeeCCCCCCcccCCccccceeEEeecCCCCCCCCCCCCCcCCcceeecccccceeEecccccCC
Q 043647 701 VLDMLQPHRSLKELTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCTSLPSLGLLGSLKNLTIKGMRRLKSIGFEIYGE 780 (1096)
Q Consensus 701 ~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 780 (1096)
+++|....++. ..+++|+.|++++|.. ..++..++|+.|+++++. +..++.
T Consensus 178 ---------------L~~N~l~~~~~----~~l~~L~~L~l~~n~l----~~l~~~~~L~~L~ls~n~-l~~~~~----- 228 (597)
T 3oja_B 178 ---------------LSSNRLTHVDL----SLIPSLFHANVSYNLL----STLAIPIAVEELDASHNS-INVVRG----- 228 (597)
T ss_dssp ---------------CTTSCCSBCCG----GGCTTCSEEECCSSCC----SEEECCTTCSEEECCSSC-CCEEEC-----
T ss_pred ---------------CcCCCCCCcCh----hhhhhhhhhhcccCcc----ccccCCchhheeeccCCc-cccccc-----
Confidence 22222222211 1144555555554421 112233455666665532 222221
Q ss_pred CCCCCCCCCceecccCCCcCcccccCccCCcccccccccEEEEecCCCcCccCCCCCCCccEEEEecccCccccCCCCCC
Q 043647 781 GCSKPFQALETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLPNHLPILEKLMIYECVQLVVSFSSLPL 860 (1096)
Q Consensus 781 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~ 860 (1096)
..+++|+.|.+.++.- ... .....+++|+.|++++|. +.+..| ..+..+++
T Consensus 229 ---~~~~~L~~L~L~~n~l-~~~------~~l~~l~~L~~L~Ls~N~-l~~~~~------------------~~~~~l~~ 279 (597)
T 3oja_B 229 ---PVNVELTILKLQHNNL-TDT------AWLLNYPGLVEVDLSYNE-LEKIMY------------------HPFVKMQR 279 (597)
T ss_dssp ---SCCSCCCEEECCSSCC-CCC------GGGGGCTTCSEEECCSSC-CCEEES------------------GGGTTCSS
T ss_pred ---ccCCCCCEEECCCCCC-CCC------hhhccCCCCCEEECCCCc-cCCCCH------------------HHhcCccC
Confidence 1134455555544321 111 113456666666666643 221212 24556777
Q ss_pred cceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCCCCCCCCC
Q 043647 861 LCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLPEGLPNLN 940 (1096)
Q Consensus 861 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~ 940 (1096)
|+.|+|++|....+ ...+..+++|+.|+|++|. +..+|..+..+++|+.|++++|+ +..+| +..++
T Consensus 280 L~~L~Ls~N~l~~l----------~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~ 345 (597)
T 3oja_B 280 LERLYISNNRLVAL----------NLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHH 345 (597)
T ss_dssp CCEEECTTSCCCEE----------ECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTC
T ss_pred CCEEECCCCCCCCC----------CcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC-CCCcC--hhhcC
Confidence 77777777753321 1223457788888888875 55677777777888888888854 45554 56677
Q ss_pred CcCeEEEeCCC
Q 043647 941 SLHNIYVWDCP 951 (1096)
Q Consensus 941 ~L~~L~l~~c~ 951 (1096)
+|+.|++++|+
T Consensus 346 ~L~~L~l~~N~ 356 (597)
T 3oja_B 346 TLKNLTLSHND 356 (597)
T ss_dssp CCSEEECCSSC
T ss_pred CCCEEEeeCCC
Confidence 88888888765
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=9.4e-19 Score=194.91 Aligned_cols=292 Identities=16% Similarity=0.231 Sum_probs=177.1
Q ss_pred CcceEEEecccccccCCCCcCCCCccceeeccccccccccc-ccccCCCCcEEeccCcccCccc-CccccCCCCCceEEe
Q 043647 556 TKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPE-SICSLCNLQFLILRGCYRLKKL-PSNLRNLINLRHLVV 633 (1096)
Q Consensus 556 ~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l 633 (1096)
.++++++++++.++.+|..+. ++|++|++++|.++.+|. .+.++++|++|++++| .+..+ |..+..+++|++|++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEEC
Confidence 468899999999999988765 689999999999998876 7889999999999986 45555 778899999999999
Q ss_pred ccccccccCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCCe
Q 043647 634 TYVDLIREMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKE 713 (1096)
Q Consensus 634 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 713 (1096)
++|. +..+|..+. ++|+.
T Consensus 108 s~n~-l~~l~~~~~-------------------------------------------------------------~~L~~ 125 (330)
T 1xku_A 108 SKNQ-LKELPEKMP-------------------------------------------------------------KTLQE 125 (330)
T ss_dssp CSSC-CSBCCSSCC-------------------------------------------------------------TTCCE
T ss_pred CCCc-CCccChhhc-------------------------------------------------------------ccccE
Confidence 8886 555553321 12334
Q ss_pred EEEeeeCCCCCCcc-cCCccccceeEEeecCCCCCC--CCC-CCCCcCCcceeecccccceeEecccccCCCCCCCCCCC
Q 043647 714 LTVKCYGGTVFPSW-MGDPLFSNIVLLRLEDCEKCT--SLP-SLGLLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQAL 789 (1096)
Q Consensus 714 L~l~~~~~~~~p~~-~~~~~~~~L~~L~L~~~~~~~--~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L 789 (1096)
|+++++....++.. +.. +++|+.|++++|.... ..+ .
T Consensus 126 L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~------------------------------------- 166 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNG--LNQMIVVELGTNPLKSSGIENGA------------------------------------- 166 (330)
T ss_dssp EECCSSCCCBBCHHHHTT--CTTCCEEECCSSCCCGGGBCTTG-------------------------------------
T ss_pred EECCCCcccccCHhHhcC--CccccEEECCCCcCCccCcChhh-------------------------------------
Confidence 44444433333221 111 3444444444432210 000 1
Q ss_pred ceecccCCCcCcccccCccCCcccccccccEEEEecCCCcCccCCCCCCCccEEEEecccCccccCCCCCCcceEEeccC
Q 043647 790 ETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLPNHLPILEKLMIYECVQLVVSFSSLPLLCKLEIDRC 869 (1096)
Q Consensus 790 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~ 869 (1096)
...+++|+.|++++|. +. .+|..+ .++|++|++++|
T Consensus 167 ----------------------~~~l~~L~~L~l~~n~-l~-~l~~~~--------------------~~~L~~L~l~~n 202 (330)
T 1xku_A 167 ----------------------FQGMKKLSYIRIADTN-IT-TIPQGL--------------------PPSLTELHLDGN 202 (330)
T ss_dssp ----------------------GGGCTTCCEEECCSSC-CC-SCCSSC--------------------CTTCSEEECTTS
T ss_pred ----------------------ccCCCCcCEEECCCCc-cc-cCCccc--------------------cccCCEEECCCC
Confidence 2334455555555532 21 222110 145555666555
Q ss_pred CCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeC
Q 043647 870 KGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWD 949 (1096)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 949 (1096)
... ......+..+++|++|++++|......+..+..+++|++|++++| .++.+|.++..+++|++|++++
T Consensus 203 ~l~---------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 203 KIT---------KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp CCC---------EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCS
T ss_pred cCC---------ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCC
Confidence 322 122334556777888888887633333446778888999999885 5778888888889999999998
Q ss_pred CCCCcccCCCCCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCcc-ccccccccCcCCCCccE
Q 043647 950 CPSLVSFPEGGLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAV-SFPEEEIGMTFPSSLTE 1028 (1096)
Q Consensus 950 c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~-~l~~~~~~~~~~~sL~~ 1028 (1096)
| .++.++...+... ......++|+.|++++|+... .++.. .|..+.+|+.
T Consensus 273 N-~i~~~~~~~f~~~--------------------------~~~~~~~~l~~l~l~~N~~~~~~i~~~--~f~~~~~l~~ 323 (330)
T 1xku_A 273 N-NISAIGSNDFCPP--------------------------GYNTKKASYSGVSLFSNPVQYWEIQPS--TFRCVYVRAA 323 (330)
T ss_dssp S-CCCCCCTTSSSCS--------------------------SCCTTSCCCSEEECCSSSSCGGGSCGG--GGTTCCCGGG
T ss_pred C-cCCccChhhcCCc--------------------------ccccccccccceEeecCcccccccCcc--ccccccceeE
Confidence 4 5666664322100 011234677788888885321 23222 3466778888
Q ss_pred EEeccC
Q 043647 1029 LVIVRF 1034 (1096)
Q Consensus 1029 L~l~~c 1034 (1096)
++++++
T Consensus 324 l~L~~N 329 (330)
T 1xku_A 324 VQLGNY 329 (330)
T ss_dssp EEC---
T ss_pred EEeccc
Confidence 887764
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=1e-18 Score=194.64 Aligned_cols=86 Identities=21% Similarity=0.332 Sum_probs=70.7
Q ss_pred CcceEEEecccccccCCCCcCCCCccceeecccccccccc-cccccCCCCcEEeccCcccCccc-CccccCCCCCceEEe
Q 043647 556 TKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLP-ESICSLCNLQFLILRGCYRLKKL-PSNLRNLINLRHLVV 633 (1096)
Q Consensus 556 ~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l 633 (1096)
.++++++++++.++.+|..+. ++|++|++++|.+..+| ..+.++++|++|++++| .+..+ |..+.++++|++|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEEC
Confidence 368899999999999988774 68999999999999885 47899999999999996 46665 677899999999999
Q ss_pred ccccccccCccc
Q 043647 634 TYVDLIREMPLG 645 (1096)
Q Consensus 634 ~~~~~~~~~p~~ 645 (1096)
++|. +..+|..
T Consensus 110 ~~n~-l~~l~~~ 120 (332)
T 2ft3_A 110 SKNH-LVEIPPN 120 (332)
T ss_dssp CSSC-CCSCCSS
T ss_pred CCCc-CCccCcc
Confidence 8887 5555543
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=3.3e-18 Score=190.57 Aligned_cols=73 Identities=25% Similarity=0.380 Sum_probs=55.8
Q ss_pred CccceeecccccccccccccccCCCCcEEeccCcccCcccC-ccccCCCCCceEEeccccccccC-cccCCCCCCCCcC
Q 043647 579 KHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLP-SNLRNLINLRHLVVTYVDLIREM-PLGIKELKCLQML 655 (1096)
Q Consensus 579 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~-p~~i~~L~~L~~L 655 (1096)
.+|++++++++.++.+|..+. .+|++|++++| .+..+| ..+.++++|++|++++|. +..+ |..++++++|++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEE
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEE
Confidence 479999999999999998774 68999999996 577765 478999999999999987 4443 4445444444433
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=1.5e-20 Score=228.30 Aligned_cols=397 Identities=16% Similarity=0.125 Sum_probs=204.0
Q ss_pred hhcCCCCcceEEEeccccc----ccCCCCcC------------CCCccceeecccccccc-cccccccC--CCCcEEecc
Q 043647 550 NLLPKFTKLRVLSLKKYYI----TELPHSIG------------DLKHLRYINLSETMIRC-LPESICSL--CNLQFLILR 610 (1096)
Q Consensus 550 ~~~~~~~~Lr~L~L~~~~~----~~lp~~i~------------~l~~Lr~L~L~~~~i~~-lp~~i~~L--~~L~~L~L~ 610 (1096)
..+..+++|+.|+++++.. ..+|..++ .+++|++|+|++|.+.. .+..+..+ .+|++|+++
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~ 146 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD 146 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEE
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECc
Confidence 4455677788888877542 22343333 67888888888887763 34455553 448888888
Q ss_pred CcccCc--ccCccccCCCCCceEEecccccccc----CcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEe
Q 043647 611 GCYRLK--KLPSNLRNLINLRHLVVTYVDLIRE----MPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCIS 684 (1096)
Q Consensus 611 ~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~----~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~ 684 (1096)
+|..+. .++..+..+++|++|++++|..... ++.....+++|++|...... +..
T Consensus 147 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~------~~~-------------- 206 (592)
T 3ogk_B 147 KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE------FAK-------------- 206 (592)
T ss_dssp SCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC------CSS--------------
T ss_pred CCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC------CCc--------------
Confidence 875332 2333345788888888888762111 11112233444444210000 000
Q ss_pred ecCCCCCCcchHHHHHHhhccCCCCCCCeEEEeeeCCCCCCcccCCccccceeEEeecCCCCCC----CCCCCCCcCCcc
Q 043647 685 RLDYFDDSRNEALEKNVLDMLQPHRSLKELTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCT----SLPSLGLLGSLK 760 (1096)
Q Consensus 685 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~----~l~~l~~l~~L~ 760 (1096)
.. .......+..+++|+.|++.++....+|..+.. +++|+.|+++.+.... ....++.+++|+
T Consensus 207 -------~~----~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~ 273 (592)
T 3ogk_B 207 -------IS----PKDLETIARNCRSLVSVKVGDFEILELVGFFKA--AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC 273 (592)
T ss_dssp -------CC----HHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH--CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCC
T ss_pred -------cC----HHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh--hhHHHhhcccccccccchHHHHHHhhcccccc
Confidence 00 001111223345666666666555555544433 5666666665432211 111344445555
Q ss_pred eeecccccceeEecccccCCCCCCCCCCCceecccCCCcCcccccCccCCcccccccccEEEEecCCCcCcc-C---CCC
Q 043647 761 NLTIKGMRRLKSIGFEIYGEGCSKPFQALETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGR-L---PNH 836 (1096)
Q Consensus 761 ~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-~---p~~ 836 (1096)
.|.+.++ .. .... .....+++|++|++++|. +... + ...
T Consensus 274 ~L~l~~~------------------------------~~-~~l~-----~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~ 316 (592)
T 3ogk_B 274 RLGLSYM------------------------------GP-NEMP-----ILFPFAAQIRKLDLLYAL-LETEDHCTLIQK 316 (592)
T ss_dssp EEEETTC------------------------------CT-TTGG-----GGGGGGGGCCEEEETTCC-CCHHHHHHHHTT
T ss_pred ccCcccc------------------------------ch-hHHH-----HHHhhcCCCcEEecCCCc-CCHHHHHHHHHh
Confidence 5554432 10 0000 003446677777777765 3211 1 145
Q ss_pred CCCccEEEEecccC---ccccCCCCCCcceEEecc----------CCCccccCCCCcccccCCCCCCCCCccEEEEccCC
Q 043647 837 LPILEKLMIYECVQ---LVVSFSSLPLLCKLEIDR----------CKGVACRSPADLMSINSDSFKYFRALQQLEILDCP 903 (1096)
Q Consensus 837 l~~L~~L~l~~~~~---l~~~~~~l~~L~~L~l~~----------~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 903 (1096)
+++|+.|++.++.. +...+..+++|++|++++ |..+..... ......+++|++|+++.+.
T Consensus 317 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~-------~~l~~~~~~L~~L~l~~~~ 389 (592)
T 3ogk_B 317 CPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL-------IALAQGCQELEYMAVYVSD 389 (592)
T ss_dssp CTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH-------HHHHHHCTTCSEEEEEESC
T ss_pred CcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH-------HHHHhhCccCeEEEeecCC
Confidence 67777777764321 111223467788888874 443321100 0012346788888884443
Q ss_pred Cccc-chhhc-CCCCCcCeEEEec---CCCcCcCCC------CCCCCCCcCeEEEeCCCC-CcccCC---CCCCCCcCeE
Q 043647 904 KLES-IAERF-HNNTSLGCIWIWK---CENLKSLPE------GLPNLNSLHNIYVWDCPS-LVSFPE---GGLPNCSLSV 968 (1096)
Q Consensus 904 ~l~~-l~~~~-~~l~~L~~L~l~~---c~~l~~lp~------~l~~l~~L~~L~l~~c~~-l~~l~~---~~~~~~L~~L 968 (1096)
++. ....+ ..+++|++|++++ |+.++..|. .+.++++|+.|++++|.. ++.... ....++|+.|
T Consensus 390 -l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L 468 (592)
T 3ogk_B 390 -ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM 468 (592)
T ss_dssp -CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEE
T ss_pred -ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEe
Confidence 332 23333 3477888888874 556665432 144577888888877653 221100 0123667777
Q ss_pred EEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccc--cccccccCcCCCCccEEEeccCCCCc
Q 043647 969 TIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVS--FPEEEIGMTFPSSLTELVIVRFPKLK 1038 (1096)
Q Consensus 969 ~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~--l~~~~~~~~~~~sL~~L~l~~c~~l~ 1038 (1096)
++++|. ++.. .....+.++++|++|+|++|+ +.. ++.. ...+++|+.|++++|+ ++
T Consensus 469 ~L~~n~-l~~~--------~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~---~~~l~~L~~L~ls~n~-it 526 (592)
T 3ogk_B 469 LLGYVG-ESDE--------GLMEFSRGCPNLQKLEMRGCC-FSERAIAAA---VTKLPSLRYLWVQGYR-AS 526 (592)
T ss_dssp EECSCC-SSHH--------HHHHHHTCCTTCCEEEEESCC-CBHHHHHHH---HHHCSSCCEEEEESCB-CC
T ss_pred eccCCC-CCHH--------HHHHHHhcCcccCeeeccCCC-CcHHHHHHH---HHhcCccCeeECcCCc-CC
Confidence 777664 3220 001134567788888888885 432 2221 1346778888888865 44
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=1.1e-17 Score=199.35 Aligned_cols=257 Identities=22% Similarity=0.204 Sum_probs=158.1
Q ss_pred CcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceEEecc
Q 043647 556 TKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLVVTY 635 (1096)
Q Consensus 556 ~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~ 635 (1096)
.++++|+++++.++.+|..+. ++|++|++++|.|+.+|. .+++|++|+|++| .+..+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcC
Confidence 458999999999999998886 799999999999999998 6799999999996 6888987 789999999999
Q ss_pred ccccccCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCCeEE
Q 043647 636 VDLIREMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKELT 715 (1096)
Q Consensus 636 ~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 715 (1096)
|. +..+|. .+++ |+.|+
T Consensus 111 N~-l~~l~~---~l~~-----------------------------------------------------------L~~L~ 127 (622)
T 3g06_A 111 NP-LTHLPA---LPSG-----------------------------------------------------------LCKLW 127 (622)
T ss_dssp CC-CCCCCC---CCTT-----------------------------------------------------------CCEEE
T ss_pred Cc-CCCCCC---CCCC-----------------------------------------------------------cCEEE
Confidence 87 565554 2223 33344
Q ss_pred EeeeCCCCCCcccCCccccceeEEeecCCCCCCCCCCCCCcCCcceeecccccceeEecccccCCCCCCCCCCCceeccc
Q 043647 716 VKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCTSLPSLGLLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQALETLCFE 795 (1096)
Q Consensus 716 l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 795 (1096)
+++|....+|.. +++|++|++++|. ++.+|. .+++|+.|+++++ .++.++
T Consensus 128 L~~N~l~~lp~~-----l~~L~~L~Ls~N~-l~~l~~--~~~~L~~L~L~~N-~l~~l~--------------------- 177 (622)
T 3g06_A 128 IFGNQLTSLPVL-----PPGLQELSVSDNQ-LASLPA--LPSELCKLWAYNN-QLTSLP--------------------- 177 (622)
T ss_dssp CCSSCCSCCCCC-----CTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSS-CCSCCC---------------------
T ss_pred CCCCCCCcCCCC-----CCCCCEEECcCCc-CCCcCC--ccCCCCEEECCCC-CCCCCc---------------------
Confidence 444444444432 2455555555552 223332 2244555555442 111111
Q ss_pred CCCcCcccccCccCCcccccccccEEEEecCCCcCccCCCCCCCccEEEEecccCccccCCCCCCcceEEeccCCCcccc
Q 043647 796 DLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLPNHLPILEKLMIYECVQLVVSFSSLPLLCKLEIDRCKGVACR 875 (1096)
Q Consensus 796 ~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~ 875 (1096)
..+++|+.|++++|. ++ .+|..+++|+.|.+.+|... ..-..+++|+.|++++|....
T Consensus 178 -----------------~~~~~L~~L~Ls~N~-l~-~l~~~~~~L~~L~L~~N~l~-~l~~~~~~L~~L~Ls~N~L~~-- 235 (622)
T 3g06_A 178 -----------------MLPSGLQELSVSDNQ-LA-SLPTLPSELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLTS-- 235 (622)
T ss_dssp -----------------CCCTTCCEEECCSSC-CS-CCCCCCTTCCEEECCSSCCS-SCCCCCTTCCEEECCSSCCSC--
T ss_pred -----------------ccCCCCcEEECCCCC-CC-CCCCccchhhEEECcCCccc-ccCCCCCCCCEEEccCCccCc--
Confidence 012233333333321 22 23333333444443333211 001123567777777664221
Q ss_pred CCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCCC
Q 043647 876 SPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCPS 952 (1096)
Q Consensus 876 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 952 (1096)
++ ..+++|+.|++++|. ++.+|. .+++|+.|++++| .++.+|..+.++++|+.|+|++|+.
T Consensus 236 -------lp----~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 236 -------LP----VLPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp -------CC----CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred -------CC----CCCCcCcEEECCCCC-CCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 11 345678888888874 666665 5678888888885 5667887788888888888888654
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=4e-19 Score=195.57 Aligned_cols=100 Identities=21% Similarity=0.352 Sum_probs=77.7
Q ss_pred CcceEEEecccccc---cCCCCcCCCCccceeeccc-cccc-ccccccccCCCCcEEeccCcccCcccCccccCCCCCce
Q 043647 556 TKLRVLSLKKYYIT---ELPHSIGDLKHLRYINLSE-TMIR-CLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRH 630 (1096)
Q Consensus 556 ~~Lr~L~L~~~~~~---~lp~~i~~l~~Lr~L~L~~-~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 630 (1096)
.+++.|+++++.+. .+|..++++++|++|++++ |.+. .+|..++++++|++|++++|.....+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57889999999887 5788899999999999985 7776 67888999999999999986433478888899999999
Q ss_pred EEeccccccccCcccCCCCCCCCcC
Q 043647 631 LVVTYVDLIREMPLGIKELKCLQML 655 (1096)
Q Consensus 631 L~l~~~~~~~~~p~~i~~L~~L~~L 655 (1096)
|++++|.....+|..++.+++|++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeE
Confidence 9998887333555555444444433
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.76 E-value=2.5e-18 Score=190.37 Aligned_cols=161 Identities=26% Similarity=0.445 Sum_probs=123.3
Q ss_pred hcCCCCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccC------
Q 043647 551 LLPKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRN------ 624 (1096)
Q Consensus 551 ~~~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~------ 624 (1096)
.+.++++|++|++++|.+..+|..++++.+|++|+|++|.+..+|..++++++|++|++++|..+..+|..+..
T Consensus 99 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp CGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 35568999999999999999999999999999999999999999999999999999999999889999988765
Q ss_pred ---CCCCceEEeccccccccCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHH
Q 043647 625 ---LINLRHLVVTYVDLIREMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNV 701 (1096)
Q Consensus 625 ---l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~ 701 (1096)
+++|++|++++|. +..+|..++++++|++
T Consensus 179 ~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~----------------------------------------------- 210 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTG-IRSLPASIANLQNLKS----------------------------------------------- 210 (328)
T ss_dssp EEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCE-----------------------------------------------
T ss_pred hccCCCCCEEECcCCC-cCcchHhhcCCCCCCE-----------------------------------------------
Confidence 9999999999987 5577766655554444
Q ss_pred hhccCCCCCCCeEEEeeeCCCCCCcccCCccccceeEEeecCCCCCCCCC-CCCCcCCcceeecccccceeEe
Q 043647 702 LDMLQPHRSLKELTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCTSLP-SLGLLGSLKNLTIKGMRRLKSI 773 (1096)
Q Consensus 702 ~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~ 773 (1096)
|++++|....+|..+.. +++|+.|++++|...+.+| .++.+++|+.|+|++|.....+
T Consensus 211 ------------L~L~~N~l~~l~~~l~~--l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~ 269 (328)
T 4fcg_A 211 ------------LKIRNSPLSALGPAIHH--LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269 (328)
T ss_dssp ------------EEEESSCCCCCCGGGGG--CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBC
T ss_pred ------------EEccCCCCCcCchhhcc--CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhc
Confidence 44555555555554433 5666666666666555555 4566666666666665444433
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.74 E-value=4.5e-17 Score=181.29 Aligned_cols=171 Identities=22% Similarity=0.210 Sum_probs=120.8
Q ss_pred CcceEEEecccccccCCC-CcCCCCccceeeccccccccc-ccccccCCCCcEEeccCcccCcccCccccCCCCCceEEe
Q 043647 556 TKLRVLSLKKYYITELPH-SIGDLKHLRYINLSETMIRCL-PESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLVV 633 (1096)
Q Consensus 556 ~~Lr~L~L~~~~~~~lp~-~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l 633 (1096)
+.|++|++++|.++.++. .|+++++|++|++++|.++.+ |..+.++++|++|++++| .+..+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEEC
Confidence 689999999999998865 789999999999999999987 788999999999999996 6888988765 79999999
Q ss_pred ccccccccCcc-cCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCC
Q 043647 634 TYVDLIREMPL-GIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLK 712 (1096)
Q Consensus 634 ~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 712 (1096)
++|. +..++. .++++++|++|...... +...+ .....+..+++|+
T Consensus 129 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~------l~~~~---------------------------~~~~~~~~l~~L~ 174 (330)
T 1xku_A 129 HENE-ITKVRKSVFNGLNQMIVVELGTNP------LKSSG---------------------------IENGAFQGMKKLS 174 (330)
T ss_dssp CSSC-CCBBCHHHHTTCTTCCEEECCSSC------CCGGG---------------------------BCTTGGGGCTTCC
T ss_pred CCCc-ccccCHhHhcCCccccEEECCCCc------CCccC---------------------------cChhhccCCCCcC
Confidence 9988 555553 46777777776421110 00000 0112344456777
Q ss_pred eEEEeeeCCCCCCcccCCccccceeEEeecCCCCCCCCC-CCCCcCCcceeecccc
Q 043647 713 ELTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCTSLP-SLGLLGSLKNLTIKGM 767 (1096)
Q Consensus 713 ~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~ 767 (1096)
.|+++++....+|..+ +++|+.|++++|......+ .++.+++|+.|+++++
T Consensus 175 ~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 175 YIRIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp EEECCSSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred EEECCCCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 7777777777666554 3567777777764333222 4566666666666653
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.72 E-value=3e-16 Score=186.92 Aligned_cols=112 Identities=28% Similarity=0.283 Sum_probs=72.4
Q ss_pred CCCCeEEEeeeCCCCCCcccCCccccceeEEeecCCCCCCCCCCCCCcCCcceeecccccceeEecccccCCCCCCCCCC
Q 043647 709 RSLKELTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCTSLPSLGLLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQA 788 (1096)
Q Consensus 709 ~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 788 (1096)
.+++.|+++++....+|..+ .++|+.|++++|. ++.+|. .+++|+.|+|+++. ++.++. .+++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l----~~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~-l~~lp~---------~l~~ 102 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCL----PAHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQ-LTSLPV---------LPPG 102 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCC----CTTCSEEEECSCC-CSCCCC--CCTTCCEEEECSCC-CSCCCC---------CCTT
T ss_pred CCCcEEEecCCCcCccChhh----CCCCcEEEecCCC-CCCCCC--cCCCCCEEEcCCCc-CCcCCC---------CCCC
Confidence 46889999999998888765 3789999999985 556776 57899999998763 443331 2566
Q ss_pred CceecccCCCcCcccccCccCCcccccccccEEEEecCCCcCccCCCCCCCccEEEEecc
Q 043647 789 LETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLPNHLPILEKLMIYEC 848 (1096)
Q Consensus 789 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~ 848 (1096)
|++|+++++. +..+ ...+++|+.|++++| +++ .+|..+++|+.|++++|
T Consensus 103 L~~L~Ls~N~-l~~l--------~~~l~~L~~L~L~~N-~l~-~lp~~l~~L~~L~Ls~N 151 (622)
T 3g06_A 103 LLELSIFSNP-LTHL--------PALPSGLCKLWIFGN-QLT-SLPVLPPGLQELSVSDN 151 (622)
T ss_dssp CCEEEECSCC-CCCC--------CCCCTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSS
T ss_pred CCEEECcCCc-CCCC--------CCCCCCcCEEECCCC-CCC-cCCCCCCCCCEEECcCC
Confidence 6776666542 1111 113556666666664 343 45555555555555554
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=2.5e-16 Score=182.72 Aligned_cols=217 Identities=22% Similarity=0.310 Sum_probs=138.5
Q ss_pred CccEEEEecccCc---cccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchh-hcCC
Q 043647 839 ILEKLMIYECVQL---VVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAE-RFHN 914 (1096)
Q Consensus 839 ~L~~L~l~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~-~~~~ 914 (1096)
+++.|++.++... ...|..+++|+.|+|++|... .+....+..+++|++|+|++|. ++.++. .+..
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~---------~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 134 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR---------TIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVY 134 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC---------EECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCS
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC---------ccChhhccCCccCCEEECCCCc-CCeeCHhHhhc
Confidence 3455555444321 124566677777777776422 2233445667777777777764 445543 4667
Q ss_pred CCCcCeEEEecCCCcCcCC-CCCCCCCCcCeEEEeCCCCCcccCCCCC--CCCcCeEEEccCcCCcCCCCCCCCCCCCcc
Q 043647 915 NTSLGCIWIWKCENLKSLP-EGLPNLNSLHNIYVWDCPSLVSFPEGGL--PNCSLSVTIGKCEKLKALPNLNAYESPIDW 991 (1096)
Q Consensus 915 l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~ 991 (1096)
+++|++|++++|. ++.+| ..+..+++|+.|++++|+.+..++...+ .++|+.|++++| +++.++
T Consensus 135 l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~----------- 201 (440)
T 3zyj_A 135 LSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP----------- 201 (440)
T ss_dssp CSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC-----------
T ss_pred cccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc-----------
Confidence 7777777777743 44444 3566777777777777777777665433 267777777775 455554
Q ss_pred cCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCCCCCc-
Q 043647 992 GLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFPEAGL- 1070 (1096)
Q Consensus 992 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~l- 1070 (1096)
.+..+++|++|++++| .+..++.. .|..+++|+.|++++ +.++.++...|.++++|+.|+|++ ++++.+|...+
T Consensus 202 ~~~~l~~L~~L~Ls~N-~l~~~~~~--~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~ 276 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGN-HLSAIRPG--SFQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAH-NNLTLLPHDLFT 276 (440)
T ss_dssp CCTTCSSCCEEECTTS-CCCEECTT--TTTTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTT-SCCCCCCTTTTS
T ss_pred ccCCCcccCEEECCCC-ccCccChh--hhccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCC-CCCCccChhHhc
Confidence 4667777788888877 56665433 245677788888777 557777666777777888888877 56777776443
Q ss_pred -cccccceeeccCc
Q 043647 1071 -PSSLLELYINDYP 1083 (1096)
Q Consensus 1071 -~~~L~~L~i~~c~ 1083 (1096)
.++|+.|++++||
T Consensus 277 ~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 277 PLHHLERIHLHHNP 290 (440)
T ss_dssp SCTTCCEEECCSSC
T ss_pred cccCCCEEEcCCCC
Confidence 4577777777765
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.72 E-value=4.9e-17 Score=182.81 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=46.3
Q ss_pred CCCccEEEEccCCC----cccchhhcCCCCCcCeEEEecCCCcCcCCCCC-CCCCCcCeEEEeCCCCC
Q 043647 891 FRALQQLEILDCPK----LESIAERFHNNTSLGCIWIWKCENLKSLPEGL-PNLNSLHNIYVWDCPSL 953 (1096)
Q Consensus 891 l~~L~~L~L~~~~~----l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~~l 953 (1096)
.+.++.++++++.. +..+|..+..+++|+.|++++| .++.+|..+ ..+++|++|++++|+..
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 34566666666542 2246777889999999999995 677888774 88999999999997643
No 57
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=1.3e-19 Score=219.93 Aligned_cols=392 Identities=10% Similarity=0.056 Sum_probs=179.2
Q ss_pred cCCCCcceEEEecccccccC-CCCcCCC--Cccceeeccccc-cc--ccccccccCCCCcEEeccCcccCcc----cCcc
Q 043647 552 LPKFTKLRVLSLKKYYITEL-PHSIGDL--KHLRYINLSETM-IR--CLPESICSLCNLQFLILRGCYRLKK----LPSN 621 (1096)
Q Consensus 552 ~~~~~~Lr~L~L~~~~~~~l-p~~i~~l--~~Lr~L~L~~~~-i~--~lp~~i~~L~~L~~L~L~~~~~l~~----lp~~ 621 (1096)
+..+++|++|+|++|.++.. +..+..+ .+|++|+|++|. +. .++..+.++++|++|+|++|..... ++..
T Consensus 108 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 108 SNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred HhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 34566677777776655421 2333332 237777776654 22 2333444666777777776632111 2333
Q ss_pred ccCCCCCceEEecccccc----ccCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHH
Q 043647 622 LRNLINLRHLVVTYVDLI----REMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEAL 697 (1096)
Q Consensus 622 i~~l~~L~~L~l~~~~~~----~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~ 697 (1096)
+..+++|++|++++|... ..++..+.++++|++|...... +..
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~------~~~--------------------------- 234 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE------ILE--------------------------- 234 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB------GGG---------------------------
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc------HHH---------------------------
Confidence 355666777777666521 1222223445555555321100 000
Q ss_pred HHHHhhccCCCCCCCeEEEeeeCCC----CCCcccCCccccceeEEeecCCCCCCCCC-CCCCcCCcceeecccccceeE
Q 043647 698 EKNVLDMLQPHRSLKELTVKCYGGT----VFPSWMGDPLFSNIVLLRLEDCEKCTSLP-SLGLLGSLKNLTIKGMRRLKS 772 (1096)
Q Consensus 698 ~~~~~~~l~~~~~L~~L~l~~~~~~----~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~ 772 (1096)
....+..+++|+.|.+..+... ..+..+. .+++|+.|.++++. ...+| .+..+++|+.|++++|. +..
T Consensus 235 ---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~-l~~ 307 (592)
T 3ogk_B 235 ---LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV--FPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYAL-LET 307 (592)
T ss_dssp ---GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC--CCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCC-CCH
T ss_pred ---HHHHHhhhhHHHhhcccccccccchHHHHHHhh--ccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCc-CCH
Confidence 0011222344445554432211 0111111 14455555554431 12222 23345555555555543 211
Q ss_pred ecccccCCCCCCCCCCCceecccCCCcCcccccCccCCcccccccccEEEEec----------CCCcCcc----CCCCCC
Q 043647 773 IGFEIYGEGCSKPFQALETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVK----------CPRLCGR----LPNHLP 838 (1096)
Q Consensus 773 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~----------c~~l~~~----~p~~l~ 838 (1096)
..... ....+++|+.|++.+...-..+. . ....+++|++|++.+ |..+... +...++
T Consensus 308 ~~~~~----~~~~~~~L~~L~L~~~~~~~~l~--~---~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (592)
T 3ogk_B 308 EDHCT----LIQKCPNLEVLETRNVIGDRGLE--V---LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378 (592)
T ss_dssp HHHHH----HHTTCTTCCEEEEEGGGHHHHHH--H---HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT
T ss_pred HHHHH----HHHhCcCCCEEeccCccCHHHHH--H---HHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc
Confidence 11100 00224555555554211000000 0 023456666666664 5554421 112356
Q ss_pred CccEEEEecccCccc----cCC-CCCCcceEEeccCC---CccccCCCCcccccCCCCCCCCCccEEEEccCCC-ccc--
Q 043647 839 ILEKLMIYECVQLVV----SFS-SLPLLCKLEIDRCK---GVACRSPADLMSINSDSFKYFRALQQLEILDCPK-LES-- 907 (1096)
Q Consensus 839 ~L~~L~l~~~~~l~~----~~~-~l~~L~~L~l~~~~---~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~-l~~-- 907 (1096)
+|++|.+ .|..+.. .+. .+++|+.|++++|. .+...+.. ......+..+++|++|++++|.. ++.
T Consensus 379 ~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~---~~~~~~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 379 ELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD---NGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp TCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH---HHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred cCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH---HHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence 6777776 3333321 122 26677777776432 22100000 00001134567788888876553 221
Q ss_pred chhhcCCCCCcCeEEEecCCCcCc--CCCCCCCCCCcCeEEEeCCCCCcc--cCCC-CCCCCcCeEEEccCcCCcCCCCC
Q 043647 908 IAERFHNNTSLGCIWIWKCENLKS--LPEGLPNLNSLHNIYVWDCPSLVS--FPEG-GLPNCSLSVTIGKCEKLKALPNL 982 (1096)
Q Consensus 908 l~~~~~~l~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~c~~l~~--l~~~-~~~~~L~~L~l~~c~~l~~l~~l 982 (1096)
+......+++|++|++++|. ++. ++..+..+++|++|+|++|+ ++. ++.. ...++|+.|++++|. ++...
T Consensus 455 ~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~-- 529 (592)
T 3ogk_B 455 LSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTG-- 529 (592)
T ss_dssp HHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTC--
T ss_pred HHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHH--
Confidence 12222457788888888764 322 33344567888888888877 432 1110 123678888888876 44311
Q ss_pred CCCCCCCcccCCCCCCcceEEEcCC
Q 043647 983 NAYESPIDWGLHKLTSLKILCVIGC 1007 (1096)
Q Consensus 983 ~~~~~~~~~~l~~l~~L~~L~l~~c 1007 (1096)
.......++.|+...+..+
T Consensus 530 ------~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 530 ------QDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp ------TTGGGGCCTTEEEEEECCC
T ss_pred ------HHHHHHhCCCcEEEEecCc
Confidence 1112335677777666654
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=2.4e-16 Score=183.45 Aligned_cols=217 Identities=24% Similarity=0.312 Sum_probs=155.9
Q ss_pred CccEEEEecccCc---cccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchh-hcCC
Q 043647 839 ILEKLMIYECVQL---VVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAE-RFHN 914 (1096)
Q Consensus 839 ~L~~L~l~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~-~~~~ 914 (1096)
+++.|++.++... ...|..+++|+.|++++|... .+....+..+++|++|+|++|. ++.++. .+..
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~---------~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 145 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR---------QIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEY 145 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC---------EECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSS
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC---------CcChhhccCcccCCEEECCCCc-CCccChhhhcc
Confidence 4555555544321 124667788888888887432 3344566778888888888876 555544 4677
Q ss_pred CCCcCeEEEecCCCcCcCC-CCCCCCCCcCeEEEeCCCCCcccCCCCC--CCCcCeEEEccCcCCcCCCCCCCCCCCCcc
Q 043647 915 NTSLGCIWIWKCENLKSLP-EGLPNLNSLHNIYVWDCPSLVSFPEGGL--PNCSLSVTIGKCEKLKALPNLNAYESPIDW 991 (1096)
Q Consensus 915 l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~ 991 (1096)
+++|++|++++| .++.+| ..+..+++|+.|++++|+.+..++...+ .++|+.|++++| +++.++
T Consensus 146 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~----------- 212 (452)
T 3zyi_A 146 LSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP----------- 212 (452)
T ss_dssp CTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCC-----------
T ss_pred cCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccc-----------
Confidence 888888888885 455555 3677888888888888888888876443 378888888876 455554
Q ss_pred cCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCCCCCc-
Q 043647 992 GLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFPEAGL- 1070 (1096)
Q Consensus 992 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~l- 1070 (1096)
.+..+++|++|++++| .+..++.. .|..+++|+.|++++ +.++.++...|.++++|+.|+|++ ++++.+|...+
T Consensus 213 ~~~~l~~L~~L~Ls~N-~l~~~~~~--~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~ 287 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGN-HFPEIRPG--SFHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAH-NNLSSLPHDLFT 287 (452)
T ss_dssp CCTTCTTCCEEECTTS-CCSEECGG--GGTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCS-SCCSCCCTTSST
T ss_pred cccccccccEEECcCC-cCcccCcc--cccCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCC-CcCCccChHHhc
Confidence 4778888999999988 66666443 246788899999988 567877667788888999999988 57888887544
Q ss_pred -cccccceeeccCc
Q 043647 1071 -PSSLLELYINDYP 1083 (1096)
Q Consensus 1071 -~~~L~~L~i~~c~ 1083 (1096)
.++|+.|++++||
T Consensus 288 ~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 288 PLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cccCCCEEEccCCC
Confidence 5688889888876
No 59
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.70 E-value=3.6e-19 Score=216.26 Aligned_cols=398 Identities=16% Similarity=0.138 Sum_probs=198.6
Q ss_pred hcCCCCcceEEEecccc-ccc---CCCC------------cCCCCccceeecccccccc-cccccc-cCCCCcEEeccCc
Q 043647 551 LLPKFTKLRVLSLKKYY-ITE---LPHS------------IGDLKHLRYINLSETMIRC-LPESIC-SLCNLQFLILRGC 612 (1096)
Q Consensus 551 ~~~~~~~Lr~L~L~~~~-~~~---lp~~------------i~~l~~Lr~L~L~~~~i~~-lp~~i~-~L~~L~~L~L~~~ 612 (1096)
.+.++++|+.|+++++. +.. .|.. ...+++|++|+|++|.+.. .+..+. .+++|++|+|++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 34567778888888865 221 1211 2356788999999888763 344554 6889999999888
Q ss_pred ccCcc--cCccccCCCCCceEEeccccccccC-ccc----CCCCCCCCcCCceEecccCCCCcccccccccccceEEEee
Q 043647 613 YRLKK--LPSNLRNLINLRHLVVTYVDLIREM-PLG----IKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISR 685 (1096)
Q Consensus 613 ~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~-p~~----i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~ 685 (1096)
..+.. ++..+.++++|++|++++|. +... +.. ...+++|++|
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L------------------------------ 189 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSL------------------------------ 189 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEE------------------------------
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEE------------------------------
Confidence 66555 55555688899999998886 3321 111 1223333333
Q ss_pred cCCCCCCcchHHHHHHhhccCCCCCCCeEEEeeeCCCCCCc-ccCC--ccccceeEEeecCCCCCCCCC-CCCCcCCcce
Q 043647 686 LDYFDDSRNEALEKNVLDMLQPHRSLKELTVKCYGGTVFPS-WMGD--PLFSNIVLLRLEDCEKCTSLP-SLGLLGSLKN 761 (1096)
Q Consensus 686 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~--~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~ 761 (1096)
+++++. ..++. .+.. ..+++|+.|++++|...+.++ .+..+++|+.
T Consensus 190 -----------------------------~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~ 239 (594)
T 2p1m_B 190 -----------------------------NISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEE 239 (594)
T ss_dssp -----------------------------ECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSE
T ss_pred -----------------------------EecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceE
Confidence 222221 00000 0000 013444555554443222222 2334455555
Q ss_pred eecccccc------eeEecccccCCCCCCCCCCCcee-cccCCCcCcccccCccCCcccccccccEEEEecCCCcCcc--
Q 043647 762 LTIKGMRR------LKSIGFEIYGEGCSKPFQALETL-CFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGR-- 832 (1096)
Q Consensus 762 L~L~~~~~------l~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-- 832 (1096)
|.+.++.. +..+...+ ..+++|+.| .+.+... ..+. .....+++|++|++++|. +...
T Consensus 240 L~l~~~~~~~~~~~~~~l~~~l------~~~~~L~~Ls~~~~~~~-~~l~-----~~~~~~~~L~~L~L~~~~-l~~~~l 306 (594)
T 2p1m_B 240 LGTGGYTAEVRPDVYSGLSVAL------SGCKELRCLSGFWDAVP-AYLP-----AVYSVCSRLTTLNLSYAT-VQSYDL 306 (594)
T ss_dssp EECSBCCCCCCHHHHHHHHHHH------HTCTTCCEEECCBTCCG-GGGG-----GGHHHHTTCCEEECTTCC-CCHHHH
T ss_pred cccccccCccchhhHHHHHHHH------hcCCCcccccCCcccch-hhHH-----HHHHhhCCCCEEEccCCC-CCHHHH
Confidence 55443321 00000011 124455554 2221110 0000 002356778888888876 4321
Q ss_pred --CCCCCCCccEEEEecccCc---cccCCCCCCcceEEeccCCCccccCCCCcccccCCCC-CCCCCccEEEEccCCCcc
Q 043647 833 --LPNHLPILEKLMIYECVQL---VVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSF-KYFRALQQLEILDCPKLE 906 (1096)
Q Consensus 833 --~p~~l~~L~~L~l~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~l~ 906 (1096)
+...+++|+.|.+.+|... ......+++|++|++.+|..........+.......+ ..+++|+.|.+..+. ++
T Consensus 307 ~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~-l~ 385 (594)
T 2p1m_B 307 VKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ-MT 385 (594)
T ss_dssp HHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC-CC
T ss_pred HHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC-cC
Confidence 1235678888888877211 1112247788888885542110000000100000011 236788888665443 43
Q ss_pred cc-hhhc-CCCCCcCeEEEe-----cCCCcCcCCC------CCCCCCCcCeEEEeCCCCCcccCCC---CCCCCcCeEEE
Q 043647 907 SI-AERF-HNNTSLGCIWIW-----KCENLKSLPE------GLPNLNSLHNIYVWDCPSLVSFPEG---GLPNCSLSVTI 970 (1096)
Q Consensus 907 ~l-~~~~-~~l~~L~~L~l~-----~c~~l~~lp~------~l~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~l 970 (1096)
.. ...+ ..+++|+.|+++ +|+.++..|. .+..+++|+.|++++ .++..... ...++|+.|++
T Consensus 386 ~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L 463 (594)
T 2p1m_B 386 NAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSV 463 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeec
Confidence 32 2222 357888888888 5667765442 145577888888865 33321110 12466778888
Q ss_pred ccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCC
Q 043647 971 GKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPK 1036 (1096)
Q Consensus 971 ~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~ 1036 (1096)
++|. ++... ......++++|++|+|++|+. ....... ....+++|+.|++++|+.
T Consensus 464 ~~~~-i~~~~--------~~~l~~~~~~L~~L~L~~n~~-~~~~~~~-~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 464 AFAG-DSDLG--------MHHVLSGCDSLRKLEIRDCPF-GDKALLA-NASKLETMRSLWMSSCSV 518 (594)
T ss_dssp ESCC-SSHHH--------HHHHHHHCTTCCEEEEESCSC-CHHHHHH-TGGGGGGSSEEEEESSCC
T ss_pred cCCC-CcHHH--------HHHHHhcCCCcCEEECcCCCC-cHHHHHH-HHHhCCCCCEEeeeCCCC
Confidence 7765 22200 000114567788888888743 2211100 013456788888887764
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=4.5e-16 Score=181.24 Aligned_cols=84 Identities=20% Similarity=0.341 Sum_probs=63.6
Q ss_pred cceEEEecccccccCCCCcCCCCccceeeccccccccc-ccccccCCCCcEEeccCcccCcccC-ccccCCCCCceEEec
Q 043647 557 KLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCL-PESICSLCNLQFLILRGCYRLKKLP-SNLRNLINLRHLVVT 634 (1096)
Q Consensus 557 ~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~ 634 (1096)
..+.+++++..++.+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++| .+..++ ..+.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECC
Confidence 34567888888888887665 5888888888888877 567888888888888886 555554 567888888888888
Q ss_pred cccccccCcc
Q 043647 635 YVDLIREMPL 644 (1096)
Q Consensus 635 ~~~~~~~~p~ 644 (1096)
+|. +..+|.
T Consensus 132 ~n~-l~~~~~ 140 (452)
T 3zyi_A 132 DNW-LTVIPS 140 (452)
T ss_dssp SSC-CSBCCT
T ss_pred CCc-CCccCh
Confidence 876 555443
No 61
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=3.6e-16 Score=164.87 Aligned_cols=183 Identities=15% Similarity=0.176 Sum_probs=119.2
Q ss_pred CCCCCCCccEEEEccCCCcccchh-hcCCCCCcCeEEEecCCCcCcCC-CCCCCCCCcCeEEEeCCCCCcccCCCCCCCC
Q 043647 887 SFKYFRALQQLEILDCPKLESIAE-RFHNNTSLGCIWIWKCENLKSLP-EGLPNLNSLHNIYVWDCPSLVSFPEGGLPNC 964 (1096)
Q Consensus 887 ~l~~l~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 964 (1096)
.+..+++|++|++++|..++.++. .+..+++|++|++++|+.++.+| ..+.++++|++|++++| .++.+|.....++
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~~~~l~~ 128 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPDLTKVYS 128 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCCCTTCCB
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccccccccc
Confidence 344455555555555543444433 34555555555555544455544 23445555555555553 2444443222244
Q ss_pred cC---eEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcc-eEEEcCCCCccccccccccCcCCCCccEEEeccCCCCccc
Q 043647 965 SL---SVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLK-ILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYL 1040 (1096)
Q Consensus 965 L~---~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~-~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l 1040 (1096)
|+ .|++++++.++.++. ..+.++++|+ +|++++| .+..+|... +.. ++|+.|++++|..++.+
T Consensus 129 L~~L~~L~l~~N~~l~~i~~---------~~~~~l~~L~~~L~l~~n-~l~~i~~~~--~~~-~~L~~L~L~~n~~l~~i 195 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIPV---------NAFQGLCNETLTLKLYNN-GFTSVQGYA--FNG-TKLDAVYLNKNKYLTVI 195 (239)
T ss_dssp CCSEEEEEEESCTTCCEECT---------TTTTTTBSSEEEEECCSC-CCCEECTTT--TTT-CEEEEEECTTCTTCCEE
T ss_pred cccccEEECCCCcchhhcCc---------ccccchhcceeEEEcCCC-CCcccCHhh--cCC-CCCCEEEcCCCCCcccC
Confidence 44 555655544554432 2578899999 9999999 788888753 233 79999999996579999
Q ss_pred CcCCCCCC-CCcCeEeeccCCCCCCCCCCCccccccceeeccCcch
Q 043647 1041 SSNGFRNL-AFLEYLQIRDCPKLTSFPEAGLPSSLLELYINDYPLM 1085 (1096)
Q Consensus 1041 ~~~~l~~l-~~L~~L~l~~c~~l~~l~~~~l~~~L~~L~i~~c~~L 1085 (1096)
+...+..+ ++|+.|++++ +.++.+|.. .+++|+.|++.+|+.|
T Consensus 196 ~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 196 DKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp CTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC---
T ss_pred CHHHhhccccCCcEEECCC-CccccCChh-HhccCceeeccCccCC
Confidence 87889999 9999999999 788999976 4568999999999865
No 62
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.69 E-value=2.2e-17 Score=181.73 Aligned_cols=232 Identities=12% Similarity=0.053 Sum_probs=143.3
Q ss_pred ccccccccEEEEecCCCcCccCCCCCCCccEEEEecccCccccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCC
Q 043647 812 VERFACLRQLSIVKCPRLCGRLPNHLPILEKLMIYECVQLVVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYF 891 (1096)
Q Consensus 812 ~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l 891 (1096)
...+++|++|++++++.+.+.+|. .+..+++|++|++++|.... .....+..+
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~~p~------------------~l~~l~~L~~L~Ls~n~l~~---------~~p~~~~~l 124 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGPIPP------------------AIAKLTQLHYLYITHTNVSG---------AIPDFLSQI 124 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESCCCG------------------GGGGCTTCSEEEEEEECCEE---------ECCGGGGGC
T ss_pred HhCCCCCCeeeCCCCCcccccCCh------------------hHhcCCCCCEEECcCCeeCC---------cCCHHHhCC
Confidence 445667777777754455444442 34445566666666554221 122234556
Q ss_pred CCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCCCCCCCCC-CcCeEEEeCCCCCcccCCCCCCCCcCeEEE
Q 043647 892 RALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLPEGLPNLN-SLHNIYVWDCPSLVSFPEGGLPNCSLSVTI 970 (1096)
Q Consensus 892 ~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l 970 (1096)
++|++|++++|.....+|..+..+++|++|++++|.....+|..+..++ +|+.|++++|..-..+|......+|+.|++
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~L 204 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL 204 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEEC
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEEC
Confidence 6666666666653335566666667777777766543335666666665 677777766433223332211123677777
Q ss_pred ccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCc-ccCcCCCCCCC
Q 043647 971 GKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLK-YLSSNGFRNLA 1049 (1096)
Q Consensus 971 ~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~-~l~~~~l~~l~ 1049 (1096)
+++.--...+ ..+..+++|+.|++++| .+...+.. +..+++|++|++++| .++ .+| ..+..++
T Consensus 205 s~N~l~~~~~----------~~~~~l~~L~~L~L~~N-~l~~~~~~---~~~l~~L~~L~Ls~N-~l~~~~p-~~l~~l~ 268 (313)
T 1ogq_A 205 SRNMLEGDAS----------VLFGSDKNTQKIHLAKN-SLAFDLGK---VGLSKNLNGLDLRNN-RIYGTLP-QGLTQLK 268 (313)
T ss_dssp CSSEEEECCG----------GGCCTTSCCSEEECCSS-EECCBGGG---CCCCTTCCEEECCSS-CCEECCC-GGGGGCT
T ss_pred cCCcccCcCC----------HHHhcCCCCCEEECCCC-ceeeecCc---ccccCCCCEEECcCC-cccCcCC-hHHhcCc
Confidence 6653322222 36778889999999998 55543332 366788999999984 466 556 6788889
Q ss_pred CcCeEeeccCCCCCCCCCCCccccccceeeccCcchh
Q 043647 1050 FLEYLQIRDCPKLTSFPEAGLPSSLLELYINDYPLMT 1086 (1096)
Q Consensus 1050 ~L~~L~l~~c~~l~~l~~~~l~~~L~~L~i~~c~~L~ 1086 (1096)
+|++|++++|+--..+|..+-.++|+.|++.+||.+.
T Consensus 269 ~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 269 FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp TCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred CCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 9999999985443377776666789999999888653
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=3.2e-16 Score=172.37 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=51.0
Q ss_pred EEEecccccccCCCCcCCCCccceeecccccccccccc-cccCCCCcEEeccCcccCccc---CccccCCCCCceEEecc
Q 043647 560 VLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPES-ICSLCNLQFLILRGCYRLKKL---PSNLRNLINLRHLVVTY 635 (1096)
Q Consensus 560 ~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~l---p~~i~~l~~L~~L~l~~ 635 (1096)
.++++++.++.+|..+. .+|++|++++|.++.+|.. +.++++|++|++++| .+..+ |..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCC
Confidence 45666666666665443 4666777777666666654 466666777777664 34433 44555666666666666
Q ss_pred ccccccCcccCCCCC
Q 043647 636 VDLIREMPLGIKELK 650 (1096)
Q Consensus 636 ~~~~~~~p~~i~~L~ 650 (1096)
|. +..+|..+..++
T Consensus 88 n~-i~~l~~~~~~l~ 101 (306)
T 2z66_A 88 NG-VITMSSNFLGLE 101 (306)
T ss_dssp CS-EEEEEEEEETCT
T ss_pred Cc-cccChhhcCCCC
Confidence 65 444443333333
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.68 E-value=1.8e-15 Score=175.37 Aligned_cols=158 Identities=23% Similarity=0.316 Sum_probs=89.6
Q ss_pred CCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchh-hcCCCCCcCeEEEecCCCcCcCC
Q 043647 855 FSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAE-RFHNNTSLGCIWIWKCENLKSLP 933 (1096)
Q Consensus 855 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp 933 (1096)
+..+++|++|++++|... .+....+..+++|++|++++|..+..++. .+..+++|++|++++| .++.+|
T Consensus 132 ~~~l~~L~~L~L~~N~i~---------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~ 201 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIE---------SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP 201 (440)
T ss_dssp SCSCSSCCEEECCSCCCC---------EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC
T ss_pred hhccccCceeeCCCCccc---------ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc
Confidence 444555566666555321 22233444555555555555555555443 3455555555555553 344444
Q ss_pred CCCCCCCCcCeEEEeCCCCCcccCCCCCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCcccc
Q 043647 934 EGLPNLNSLHNIYVWDCPSLVSFPEGGLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSF 1013 (1096)
Q Consensus 934 ~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l 1013 (1096)
. +..+++|+.|++++| .++.++. ..+.++++|+.|++++| .+..+
T Consensus 202 ~-~~~l~~L~~L~Ls~N-~l~~~~~--------------------------------~~~~~l~~L~~L~L~~n-~l~~~ 246 (440)
T 3zyj_A 202 N-LTPLIKLDELDLSGN-HLSAIRP--------------------------------GSFQGLMHLQKLWMIQS-QIQVI 246 (440)
T ss_dssp C-CTTCSSCCEEECTTS-CCCEECT--------------------------------TTTTTCTTCCEEECTTC-CCCEE
T ss_pred c-cCCCcccCEEECCCC-ccCccCh--------------------------------hhhccCccCCEEECCCC-ceeEE
Confidence 2 445555555555553 2333321 25666777777777777 56665
Q ss_pred ccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCC
Q 043647 1014 PEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCP 1060 (1096)
Q Consensus 1014 ~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~ 1060 (1096)
+.. .|..+++|+.|++++ ++++.++...+..+++|+.|+|++++
T Consensus 247 ~~~--~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 247 ERN--AFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTT--SSTTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred Chh--hhcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence 543 245667777777777 46777776667777777777777754
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.65 E-value=1.1e-16 Score=176.69 Aligned_cols=85 Identities=18% Similarity=0.208 Sum_probs=63.7
Q ss_pred hhhhhcCCCCcceEEEecccccccCC-CCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCC
Q 043647 547 VLSNLLPKFTKLRVLSLKKYYITELP-HSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNL 625 (1096)
Q Consensus 547 ~~~~~~~~~~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l 625 (1096)
.+...+..+++|++|++++|.++.++ ..|+++++|++|+|++|.+...++ +..+++|++|++++| .+..+| ..
T Consensus 25 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~----~~ 98 (317)
T 3o53_A 25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL----VG 98 (317)
T ss_dssp HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEE----EC
T ss_pred hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-cccccc----CC
Confidence 34455667778888888888888774 577888888888888888877665 788888888888885 455554 33
Q ss_pred CCCceEEecccc
Q 043647 626 INLRHLVVTYVD 637 (1096)
Q Consensus 626 ~~L~~L~l~~~~ 637 (1096)
++|++|++++|.
T Consensus 99 ~~L~~L~l~~n~ 110 (317)
T 3o53_A 99 PSIETLHAANNN 110 (317)
T ss_dssp TTCCEEECCSSC
T ss_pred CCcCEEECCCCc
Confidence 778888887775
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=2.1e-18 Score=209.40 Aligned_cols=182 Identities=16% Similarity=0.129 Sum_probs=96.5
Q ss_pred CCCcceEEEeccc-cccc--CCCCcCCCCccceeecccccccc-----cccccccCCCCcEEeccCcc-cC--cccCccc
Q 043647 554 KFTKLRVLSLKKY-YITE--LPHSIGDLKHLRYINLSETMIRC-----LPESICSLCNLQFLILRGCY-RL--KKLPSNL 622 (1096)
Q Consensus 554 ~~~~Lr~L~L~~~-~~~~--lp~~i~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~-~l--~~lp~~i 622 (1096)
.+++|++|++++| .+.. ++..+.++++|++|++++|.++. ++.....+++|++|++++|. .+ ..++.-+
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 4567777777766 3332 33334456677777777766543 22333355677777777653 11 1122223
Q ss_pred cCCCCCceEEeccccccccCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHh
Q 043647 623 RNLINLRHLVVTYVDLIREMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVL 702 (1096)
Q Consensus 623 ~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~ 702 (1096)
..+++|++|++++|..+..+|..+.++++|+.|....... ....... ....
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~----------------------------~~~~~~~-~~l~ 258 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA----------------------------EVRPDVY-SGLS 258 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCC----------------------------CCCHHHH-HHHH
T ss_pred HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccC----------------------------ccchhhH-HHHH
Confidence 4457777777776644555555555566665553110000 0001111 1223
Q ss_pred hccCCCCCCCeE-EEeeeCCCCCCcccCCccccceeEEeecCCCCCCC--CC-CCCCcCCcceeecccc
Q 043647 703 DMLQPHRSLKEL-TVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCTS--LP-SLGLLGSLKNLTIKGM 767 (1096)
Q Consensus 703 ~~l~~~~~L~~L-~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~--l~-~l~~l~~L~~L~L~~~ 767 (1096)
..+..+++|+.| .+.......+|..+. .+++|++|++++|. ++. ++ .+..+++|+.|++.+|
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAVPAYLPAVYS--VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHHTCTTCCEEECCBTCCGGGGGGGHH--HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHHhcCCCcccccCCcccchhhHHHHHH--hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 355667788877 333332223333322 26888888888886 332 11 2457788888888876
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.64 E-value=3.4e-19 Score=208.99 Aligned_cols=88 Identities=25% Similarity=0.333 Sum_probs=56.0
Q ss_pred hhhcCCCCcceEEEecccccc-----cCCCCcCCCCccceeeccccccccc-cccc-ccCC----CCcEEeccCcccCc-
Q 043647 549 SNLLPKFTKLRVLSLKKYYIT-----ELPHSIGDLKHLRYINLSETMIRCL-PESI-CSLC----NLQFLILRGCYRLK- 616 (1096)
Q Consensus 549 ~~~~~~~~~Lr~L~L~~~~~~-----~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i-~~L~----~L~~L~L~~~~~l~- 616 (1096)
...+..+++|++|++++|.++ .++..+..+++|++|++++|.+... +..+ ..+. +|++|++++|. +.
T Consensus 21 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~ 99 (461)
T 1z7x_W 21 AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTG 99 (461)
T ss_dssp HHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBG
T ss_pred HHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC-CCH
Confidence 334556677777777777765 3456666677777777777776542 2222 2344 57777777763 43
Q ss_pred ----ccCccccCCCCCceEEecccc
Q 043647 617 ----KLPSNLRNLINLRHLVVTYVD 637 (1096)
Q Consensus 617 ----~lp~~i~~l~~L~~L~l~~~~ 637 (1096)
.+|..+..+++|++|++++|.
T Consensus 100 ~~~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 100 AGCGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp GGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHHHHHHHccCCceeEEECCCCc
Confidence 456666777777777777766
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=4.6e-15 Score=161.14 Aligned_cols=203 Identities=19% Similarity=0.255 Sum_probs=95.6
Q ss_pred cCCCC-CCCccEEEEecccCcc---ccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCccc
Q 043647 832 RLPNH-LPILEKLMIYECVQLV---VSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLES 907 (1096)
Q Consensus 832 ~~p~~-l~~L~~L~l~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~ 907 (1096)
.+|.. .++|+.|++.++.... ..+..+++|++|++++|... .+....+..+++|++|++++|..++.
T Consensus 25 ~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~~l~~ 95 (285)
T 1ozn_A 25 AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA---------RIDAAAFTGLALLEQLDLSDNAQLRS 95 (285)
T ss_dssp SCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC---------EECTTTTTTCTTCCEEECCSCTTCCC
T ss_pred cCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc---------eeCHhhcCCccCCCEEeCCCCCCccc
Confidence 45543 3456666666554221 13455566666666665322 22233445556666666666654444
Q ss_pred c-hhhcCCCCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCCCCcccCCCCC--CCCcCeEEEccCcCCcCCCCCCC
Q 043647 908 I-AERFHNNTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCPSLVSFPEGGL--PNCSLSVTIGKCEKLKALPNLNA 984 (1096)
Q Consensus 908 l-~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~l~~ 984 (1096)
+ +..+..+++|++|++++|......|..+..+++|++|++++| .++.++...+ .++|+.|+++++ +++.++.
T Consensus 96 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~--- 170 (285)
T 1ozn_A 96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPE--- 170 (285)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECT---
T ss_pred cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCC-cccccCH---
Confidence 4 444556666666666664333223445555666666666653 3344443211 244555555443 2222221
Q ss_pred CCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeecc
Q 043647 985 YESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRD 1058 (1096)
Q Consensus 985 ~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~ 1058 (1096)
..+.++++|++|++++| .+..++.. .+..+++|+.|++++ +.++.++...+..+++|++|++++
T Consensus 171 ------~~~~~l~~L~~L~l~~n-~l~~~~~~--~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 171 ------RAFRGLHSLDRLLLHQN-RVAHVHPH--AFRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp ------TTTTTCTTCCEEECCSS-CCCEECTT--TTTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCS
T ss_pred ------HHhcCccccCEEECCCC-cccccCHh--HccCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccC
Confidence 12444445555555554 33333111 123344455555554 234444433344444555555544
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.63 E-value=4.4e-15 Score=163.25 Aligned_cols=245 Identities=19% Similarity=0.185 Sum_probs=137.9
Q ss_pred CeEEEeeeCCCCCCcccCCccccceeEEeecCCCCCCCCCC--CCCcCCcceeecccccceeEecccccCCCCCCCCCCC
Q 043647 712 KELTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCTSLPS--LGLLGSLKNLTIKGMRRLKSIGFEIYGEGCSKPFQAL 789 (1096)
Q Consensus 712 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L 789 (1096)
+.++.++.....+|..+ .++|+.|++++|. ++.+|. ++.+++|+.|+++++ .+..++....
T Consensus 10 ~~l~c~~~~l~~ip~~~----~~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~----------- 72 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI----PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQ----------- 72 (306)
T ss_dssp TEEECCSSCCSSCCSCC----CTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEH-----------
T ss_pred CEEEcCCCCcccCCCCC----CCCCCEEECCCCc-cCccCHhHhhccccCCEEECCCC-ccCcccCccc-----------
Confidence 34566666667777643 4678888888875 345553 677888888888764 2222210000
Q ss_pred ceecccCCCcCcccccCccCCcccccccccEEEEecCCCcCccCCCCCCCccEEEEecccCccccCCCCCCcceEEeccC
Q 043647 790 ETLCFEDLPEWEHWNSFKENDHVERFACLRQLSIVKCPRLCGRLPNHLPILEKLMIYECVQLVVSFSSLPLLCKLEIDRC 869 (1096)
Q Consensus 790 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~ 869 (1096)
....+++|+.|++++|. +. .+| ..+..+++|++|++++|
T Consensus 73 ---------------------~~~~~~~L~~L~Ls~n~-i~-~l~------------------~~~~~l~~L~~L~l~~n 111 (306)
T 2z66_A 73 ---------------------SDFGTTSLKYLDLSFNG-VI-TMS------------------SNFLGLEQLEHLDFQHS 111 (306)
T ss_dssp ---------------------HHHSCSCCCEEECCSCS-EE-EEE------------------EEEETCTTCCEEECTTS
T ss_pred ---------------------ccccccccCEEECCCCc-cc-cCh------------------hhcCCCCCCCEEECCCC
Confidence 01234556666665542 11 111 12445666777777666
Q ss_pred CCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcC-cCCCCCCCCCCcCeEEEe
Q 043647 870 KGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLK-SLPEGLPNLNSLHNIYVW 948 (1096)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~ 948 (1096)
...... ....+..+++|++|++++|......+..+..+++|++|++++|.... .+|..+..+++|+.|+++
T Consensus 112 ~l~~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 112 NLKQMS--------EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp EEESST--------TTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred cccccc--------cchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence 422211 11345566777777777776444455566777778888877754332 366777777777777777
Q ss_pred CCCCCcccCCCCCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccE
Q 043647 949 DCPSLVSFPEGGLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTE 1028 (1096)
Q Consensus 949 ~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~ 1028 (1096)
+| .++.++.. .+..+++|++|++++| .+..++... +..+++|+.
T Consensus 184 ~n-~l~~~~~~--------------------------------~~~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~ 227 (306)
T 2z66_A 184 QC-QLEQLSPT--------------------------------AFNSLSSLQVLNMSHN-NFFSLDTFP--YKCLNSLQV 227 (306)
T ss_dssp TS-CCCEECTT--------------------------------TTTTCTTCCEEECTTS-CCSBCCSGG--GTTCTTCCE
T ss_pred CC-CcCCcCHH--------------------------------HhcCCCCCCEEECCCC-ccCccChhh--ccCcccCCE
Confidence 74 34433221 3445566666666666 455544321 244566666
Q ss_pred EEeccCCCCcccCcCCCCCCC-CcCeEeeccC
Q 043647 1029 LVIVRFPKLKYLSSNGFRNLA-FLEYLQIRDC 1059 (1096)
Q Consensus 1029 L~l~~c~~l~~l~~~~l~~l~-~L~~L~l~~c 1059 (1096)
|++++| .++..+...+..++ +|++|+++++
T Consensus 228 L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 228 LDYSLN-HIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp EECTTS-CCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred eECCCC-CCcccCHHHHHhhhccCCEEEccCC
Confidence 666663 34444334555553 6666666663
No 70
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.63 E-value=1e-18 Score=204.86 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=74.1
Q ss_pred CcceEEEecccccccCC--CCcCCCCccceeeccccccc-----ccccccccCCCCcEEeccCcccCcc-cCccc-cCCC
Q 043647 556 TKLRVLSLKKYYITELP--HSIGDLKHLRYINLSETMIR-----CLPESICSLCNLQFLILRGCYRLKK-LPSNL-RNLI 626 (1096)
Q Consensus 556 ~~Lr~L~L~~~~~~~lp--~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~-lp~~i-~~l~ 626 (1096)
++|++|+++++.++..+ ..+..+++|++|++++|.+. .+|..+..+++|++|++++|. +.. .+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHh
Confidence 57899999999987542 33678899999999999987 567888899999999999964 543 23333 3455
Q ss_pred ----CCceEEeccccccc----cCcccCCCCCCCCcCC
Q 043647 627 ----NLRHLVVTYVDLIR----EMPLGIKELKCLQMLS 656 (1096)
Q Consensus 627 ----~L~~L~l~~~~~~~----~~p~~i~~L~~L~~L~ 656 (1096)
+|++|++++|.... .+|..+..+++|++|+
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 119 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEE
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEE
Confidence 79999999987321 3456667777777664
No 71
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.62 E-value=5.5e-15 Score=165.99 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=31.2
Q ss_pred CCCCCCCcCeEeeccCCCCCCCCCCC--ccccccceeeccCc
Q 043647 1044 GFRNLAFLEYLQIRDCPKLTSFPEAG--LPSSLLELYINDYP 1083 (1096)
Q Consensus 1044 ~l~~l~~L~~L~l~~c~~l~~l~~~~--l~~~L~~L~i~~c~ 1083 (1096)
.+..+++|++|++++ ++++.+|... -.++|++|++++||
T Consensus 272 ~l~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 272 LLNQISGLLELEFSR-NQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred HHhcccCCCEEECCC-CCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 356778999999999 5788888753 35789999999886
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=5.8e-16 Score=181.03 Aligned_cols=80 Identities=16% Similarity=0.183 Sum_probs=62.5
Q ss_pred cCCCCcceEEEecccccccC-CCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCce
Q 043647 552 LPKFTKLRVLSLKKYYITEL-PHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRH 630 (1096)
Q Consensus 552 ~~~~~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 630 (1096)
...+++|++|+|++|.+..+ |..|+.+++|++|+|++|.++..++ ++.+++|++|+|++| .+..+|. .++|++
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~ 103 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIET 103 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCE
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCE
Confidence 34556888999999888877 4678888889999998888887665 888888888888886 5666553 378888
Q ss_pred EEecccc
Q 043647 631 LVVTYVD 637 (1096)
Q Consensus 631 L~l~~~~ 637 (1096)
|++++|.
T Consensus 104 L~L~~N~ 110 (487)
T 3oja_A 104 LHAANNN 110 (487)
T ss_dssp EECCSSC
T ss_pred EECcCCc
Confidence 8888776
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.60 E-value=1.6e-14 Score=156.45 Aligned_cols=154 Identities=21% Similarity=0.213 Sum_probs=76.0
Q ss_pred CCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCCCCcccCCCCC--CCC
Q 043647 887 SFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCPSLVSFPEGGL--PNC 964 (1096)
Q Consensus 887 ~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~--~~~ 964 (1096)
.+..+++|++|++++|. ++.++.. ..+++|++|+++++ .++.+|..+..+++|+.|++++ +.++.++...+ .++
T Consensus 50 ~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~ 125 (290)
T 1p9a_G 50 TLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGE 125 (290)
T ss_dssp GGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTT
T ss_pred HhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCC
Confidence 34455566666666654 4444332 55666666666663 4556666566666666666665 34444443211 133
Q ss_pred cCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCC
Q 043647 965 SLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNG 1044 (1096)
Q Consensus 965 L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~ 1044 (1096)
|+.|+++++ +++.++. ..+..+++|+.|++++| .+..+|... |..+++|+.|++++ +.++.+| .+
T Consensus 126 L~~L~L~~N-~l~~~~~---------~~~~~l~~L~~L~L~~N-~l~~l~~~~--~~~l~~L~~L~L~~-N~l~~ip-~~ 190 (290)
T 1p9a_G 126 LQELYLKGN-ELKTLPP---------GLLTPTPKLEKLSLANN-NLTELPAGL--LNGLENLDTLLLQE-NSLYTIP-KG 190 (290)
T ss_dssp CCEEECTTS-CCCCCCT---------TTTTTCTTCCEEECTTS-CCSCCCTTT--TTTCTTCCEEECCS-SCCCCCC-TT
T ss_pred CCEEECCCC-CCCccCh---------hhcccccCCCEEECCCC-cCCccCHHH--hcCcCCCCEEECCC-CcCCccC-hh
Confidence 333333332 1222211 13445555555555555 455555432 23445555555555 3455555 33
Q ss_pred CCCCCCcCeEeeccC
Q 043647 1045 FRNLAFLEYLQIRDC 1059 (1096)
Q Consensus 1045 l~~l~~L~~L~l~~c 1059 (1096)
+..+++|+.|+++++
T Consensus 191 ~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 191 FFGSHLLPFAFLHGN 205 (290)
T ss_dssp TTTTCCCSEEECCSC
T ss_pred hcccccCCeEEeCCC
Confidence 444455555555553
No 74
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.59 E-value=1.7e-15 Score=135.73 Aligned_cols=80 Identities=25% Similarity=0.408 Sum_probs=73.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc--ccCCHHHHHHHHHHHHhHHhHHHHHHHHHHH
Q 043647 11 FLQMLFDRLMSREVLNFARREGVISKLEKWKKTLLMIQAVFSDAEEK--QLTDKAVKMWLDDLQDLAYDVEDILDEFATE 88 (1096)
Q Consensus 11 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~lr~~~yd~ed~ld~~~~~ 88 (1096)
+++.+++||.+.+..++....||++++++|+++|++|++||.+|+.+ +..++.++.|+++||++|||+||+||+|.++
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888999999999999999999999999999999987 5679999999999999999999999999988
Q ss_pred HH
Q 043647 89 AL 90 (1096)
Q Consensus 89 ~~ 90 (1096)
..
T Consensus 82 ~~ 83 (115)
T 3qfl_A 82 VD 83 (115)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 75
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.58 E-value=3.8e-16 Score=172.31 Aligned_cols=178 Identities=9% Similarity=-0.037 Sum_probs=98.8
Q ss_pred CCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhc-CCCCCcCeEEEecCCCcCcCCCCC
Q 043647 858 LPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERF-HNNTSLGCIWIWKCENLKSLPEGL 936 (1096)
Q Consensus 858 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~lp~~l 936 (1096)
+++|++|++++|.... +....+..+++|++|++++|......+..+ ..+++|++|++++| .++.+|. .
T Consensus 119 ~~~L~~L~l~~N~l~~---------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~ 187 (317)
T 3o53_A 119 GQGKKNIYLANNKITM---------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKG-Q 187 (317)
T ss_dssp CSSCEEEECCSSCCCS---------GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEEC-C
T ss_pred cCCCCEEECCCCCCCC---------ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCccccc-c
Confidence 4455566665553221 122234455666666666665332223333 35566666666664 3444432 2
Q ss_pred CCCCCcCeEEEeCCCCCcccCCCCCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccc
Q 043647 937 PNLNSLHNIYVWDCPSLVSFPEGGLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEE 1016 (1096)
Q Consensus 937 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~ 1016 (1096)
..+++|++|++++| .++.+|. .+..+++|++|++++| .+..+|..
T Consensus 188 ~~l~~L~~L~Ls~N-~l~~l~~---------------------------------~~~~l~~L~~L~L~~N-~l~~l~~~ 232 (317)
T 3o53_A 188 VVFAKLKTLDLSSN-KLAFMGP---------------------------------EFQSAAGVTWISLRNN-KLVLIEKA 232 (317)
T ss_dssp CCCTTCCEEECCSS-CCCEECG---------------------------------GGGGGTTCSEEECTTS-CCCEECTT
T ss_pred cccccCCEEECCCC-cCCcchh---------------------------------hhcccCcccEEECcCC-cccchhhH
Confidence 23556666666653 3333322 3556778888888888 67777764
Q ss_pred cccCcCCCCccEEEeccCCCCc--ccCcCCCCCCCCcCeEeeccCCCCCCCCCCCc-cccccceeeccCcchh
Q 043647 1017 EIGMTFPSSLTELVIVRFPKLK--YLSSNGFRNLAFLEYLQIRDCPKLTSFPEAGL-PSSLLELYINDYPLMT 1086 (1096)
Q Consensus 1017 ~~~~~~~~sL~~L~l~~c~~l~--~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~l-~~~L~~L~i~~c~~L~ 1086 (1096)
+ ..+++|+.|++++++ +. .++ ..+..+++|+.|++++|+.++..+.... .+.+....-..|+.+.
T Consensus 233 ~---~~l~~L~~L~l~~N~-~~~~~~~-~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 233 L---RFSQNLEHFDLRGNG-FHCGTLR-DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300 (317)
T ss_dssp C---CCCTTCCEEECTTCC-CBHHHHH-HHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCT
T ss_pred h---hcCCCCCEEEccCCC-ccCcCHH-HHHhccccceEEECCCchhccCCchhccCCCceecccceeeccCC
Confidence 3 567788888888844 44 444 5566778888888887666655433221 2223333334455554
No 76
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.58 E-value=1.1e-14 Score=158.22 Aligned_cols=196 Identities=17% Similarity=0.238 Sum_probs=95.3
Q ss_pred cccccEEEEecCCCcCccCC---CCCCCccEEEEecccCc---cccCCCCCCcceEEeccCCCccccCCCCcccccCCCC
Q 043647 815 FACLRQLSIVKCPRLCGRLP---NHLPILEKLMIYECVQL---VVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSF 888 (1096)
Q Consensus 815 ~~~L~~L~l~~c~~l~~~~p---~~l~~L~~L~l~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 888 (1096)
.++|+.|+++++. +....+ ..+++|+.|++.++... ...+..+++|++|++++|..+. .+....+
T Consensus 31 ~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~--------~~~~~~~ 101 (285)
T 1ozn_A 31 PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR--------SVDPATF 101 (285)
T ss_dssp CTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC--------CCCTTTT
T ss_pred CCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc--------ccCHHHh
Confidence 4456666665543 221111 23455666666554321 1234455666666666654221 1123334
Q ss_pred CCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCC-CCCCCCCCcCeEEEeCCCCCcccCCCCC--CCCc
Q 043647 889 KYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLP-EGLPNLNSLHNIYVWDCPSLVSFPEGGL--PNCS 965 (1096)
Q Consensus 889 ~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L 965 (1096)
..+++|++|++++|......+..+..+++|++|++++| .++.+| ..+..+++|+.|++++| .++.++...+ .++|
T Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSL 179 (285)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTC
T ss_pred cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCC-cccccCHHHhcCcccc
Confidence 45556666666665533223444555666666666654 233333 23555666666666653 4444443222 2556
Q ss_pred CeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccC
Q 043647 966 LSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRF 1034 (1096)
Q Consensus 966 ~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c 1034 (1096)
+.|+++++.--...+ ..+.++++|++|++++| .+..++... +..+++|+.|+++++
T Consensus 180 ~~L~l~~n~l~~~~~----------~~~~~l~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 180 DRLLLHQNRVAHVHP----------HAFRDLGRLMTLYLFAN-NLSALPTEA--LAPLRALQYLRLNDN 235 (285)
T ss_dssp CEEECCSSCCCEECT----------TTTTTCTTCCEEECCSS-CCSCCCHHH--HTTCTTCCEEECCSS
T ss_pred CEEECCCCcccccCH----------hHccCcccccEeeCCCC-cCCcCCHHH--cccCcccCEEeccCC
Confidence 666666543221112 24555566666666666 455554321 244556666666653
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.58 E-value=1.8e-16 Score=174.47 Aligned_cols=88 Identities=18% Similarity=0.121 Sum_probs=64.3
Q ss_pred cCCCCcceEEEecccccccCCCCcCCCCccceeeccccccc--ccccccc-------cCCCCcEEeccCcccCcccCccc
Q 043647 552 LPKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIR--CLPESIC-------SLCNLQFLILRGCYRLKKLPSNL 622 (1096)
Q Consensus 552 ~~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~--~lp~~i~-------~L~~L~~L~L~~~~~l~~lp~~i 622 (1096)
+...++|+.|++++|.+ .+|..+... |++|+|++|.+. .+|..+. ++.+|++|++++|.....+|..+
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 44566788888888888 777766554 888888888885 3566655 68888888888864444677776
Q ss_pred --cCCCCCceEEeccccccccCc
Q 043647 623 --RNLINLRHLVVTYVDLIREMP 643 (1096)
Q Consensus 623 --~~l~~L~~L~l~~~~~~~~~p 643 (1096)
..+++|++|++++|. +..+|
T Consensus 116 ~~~~l~~L~~L~Ls~N~-l~~~~ 137 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVS-WATRD 137 (312)
T ss_dssp SSCCSCCCSEEEEESCB-CSSSS
T ss_pred HHhcCCCccEEEccCCC-Ccchh
Confidence 788888888888876 44434
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.58 E-value=3.6e-14 Score=149.46 Aligned_cols=203 Identities=18% Similarity=0.249 Sum_probs=149.0
Q ss_pred cCCCCCCCccEEEEecccCcc---ccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccc
Q 043647 832 RLPNHLPILEKLMIYECVQLV---VSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESI 908 (1096)
Q Consensus 832 ~~p~~l~~L~~L~l~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l 908 (1096)
.+|...++|+.|++.++.-.. ..+..+++|+.|++++|..+. .+....+..+++|++|++++|..++.+
T Consensus 25 ~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~--------~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 25 RIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ--------QLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp SCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC--------EECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred ccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc--------eeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 455523356666666654211 246678899999999885222 234445678889999999985557777
Q ss_pred h-hhcCCCCCcCeEEEecCCCcCcCCCCCCCCCCcC---eEEEeCCCCCcccCCCCCC--CCcC-eEEEccCcCCcCCCC
Q 043647 909 A-ERFHNNTSLGCIWIWKCENLKSLPEGLPNLNSLH---NIYVWDCPSLVSFPEGGLP--NCSL-SVTIGKCEKLKALPN 981 (1096)
Q Consensus 909 ~-~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~---~L~l~~c~~l~~l~~~~~~--~~L~-~L~l~~c~~l~~l~~ 981 (1096)
+ ..+..+++|++|++++| .++.+|. +..+++|+ .|++++|+.++.++...+. ++|+ .|+++++ +++.++.
T Consensus 97 ~~~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~ 173 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQG 173 (239)
T ss_dssp CTTSEECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECT
T ss_pred CHHHhCCCCCCCEEeCCCC-CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCH
Confidence 5 46788999999999996 5677886 78888888 9999997688888865443 7888 9999875 4555552
Q ss_pred CCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCC-CCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCC
Q 043647 982 LNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFP-SSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCP 1060 (1096)
Q Consensus 982 l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~-~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~ 1060 (1096)
..+.. ++|++|++++|+.+..+|... |..+ ++|+.|++++ +.++.+|.. .+++|+.|+++++.
T Consensus 174 ---------~~~~~-~~L~~L~L~~n~~l~~i~~~~--~~~l~~~L~~L~l~~-N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 174 ---------YAFNG-TKLDAVYLNKNKYLTVIDKDA--FGGVYSGPSLLDVSQ-TSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp ---------TTTTT-CEEEEEECTTCTTCCEECTTT--TTTCSBCCSEEECTT-CCCCCCCCT---TCTTCSEEECTTC-
T ss_pred ---------hhcCC-CCCCEEEcCCCCCcccCCHHH--hhccccCCcEEECCC-CccccCChh---HhccCceeeccCcc
Confidence 23444 899999999996688887653 4567 8999999999 779999843 67899999999875
Q ss_pred C
Q 043647 1061 K 1061 (1096)
Q Consensus 1061 ~ 1061 (1096)
.
T Consensus 238 ~ 238 (239)
T 2xwt_C 238 T 238 (239)
T ss_dssp -
T ss_pred C
Confidence 4
No 79
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=5.5e-14 Score=157.24 Aligned_cols=125 Identities=15% Similarity=0.091 Sum_probs=74.3
Q ss_pred CCcCeEEEecCCCcCcCCC-CCCCC-CCcCeEEEeCCCCCcccCCCCCC-CCcCeEEEccCcCCcCCCCCCCCCCCCccc
Q 043647 916 TSLGCIWIWKCENLKSLPE-GLPNL-NSLHNIYVWDCPSLVSFPEGGLP-NCSLSVTIGKCEKLKALPNLNAYESPIDWG 992 (1096)
Q Consensus 916 ~~L~~L~l~~c~~l~~lp~-~l~~l-~~L~~L~l~~c~~l~~l~~~~~~-~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~ 992 (1096)
.++..|++.+++.+..+|. .+..+ ..|+.|++++ +.++.++...+. .+|+.|.+.+++.++.++. ..
T Consensus 128 ~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~---------~~ 197 (350)
T 4ay9_X 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFNGTQLDELNLSDNNNLEELPN---------DV 197 (350)
T ss_dssp SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSSTTEEEEEEECTTCTTCCCCCT---------TT
T ss_pred chhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhhccccchhHHhhccCCcccCCCH---------HH
Confidence 3344444444444444432 22222 2344444444 334444433222 3445555555555555442 25
Q ss_pred CCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeecc
Q 043647 993 LHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRD 1058 (1096)
Q Consensus 993 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~ 1058 (1096)
+.++++|++|++++| .++.+|. ..+.+|+.|.+.+|++++.+| .+.+|++|+.+++.+
T Consensus 198 f~~l~~L~~LdLs~N-~l~~lp~-----~~~~~L~~L~~l~~~~l~~lP--~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 198 FHGASGPVILDISRT-RIHSLPS-----YGLENLKKLRARSTYNLKKLP--TLEKLVALMEASLTY 255 (350)
T ss_dssp TTTEECCSEEECTTS-CCCCCCS-----SSCTTCCEEECTTCTTCCCCC--CTTTCCSCCEEECSC
T ss_pred hccCcccchhhcCCC-CcCccCh-----hhhccchHhhhccCCCcCcCC--CchhCcChhhCcCCC
Confidence 678888888888888 7888886 346778888888888888887 477888888888765
No 80
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.56 E-value=7e-14 Score=156.42 Aligned_cols=234 Identities=20% Similarity=0.215 Sum_probs=176.3
Q ss_pred EEEEecCCCcCccCCCCC-CCccEEEEecccC--cc-ccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCcc
Q 043647 820 QLSIVKCPRLCGRLPNHL-PILEKLMIYECVQ--LV-VSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQ 895 (1096)
Q Consensus 820 ~L~l~~c~~l~~~~p~~l-~~L~~L~l~~~~~--l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 895 (1096)
.++.++ .+++ .+|..+ +++++|+++++.- +. ..|.++++|++|+|++|.... .+....|.++++|.
T Consensus 13 ~v~C~~-~~Lt-~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~--------~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 13 VFLCQE-SKVT-EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE--------VIEADVFSNLPKLH 82 (350)
T ss_dssp EEEEES-TTCC-SCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC--------EECTTSBCSCTTCC
T ss_pred EEEecC-CCCC-ccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC--------ccChhHhhcchhhh
Confidence 344333 3566 788766 5799999998753 22 257889999999999997543 22445677888888
Q ss_pred EEEEccCCCcccc-hhhcCCCCCcCeEEEecCCCcCcCCC-CCCCCCCcCeEEEeCCCCCcccCCCCC---CCCcCeEEE
Q 043647 896 QLEILDCPKLESI-AERFHNNTSLGCIWIWKCENLKSLPE-GLPNLNSLHNIYVWDCPSLVSFPEGGL---PNCSLSVTI 970 (1096)
Q Consensus 896 ~L~L~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~l 970 (1096)
++.+.++..++.+ +..+..+++|++|++++| .++.+|. .+....++..|++.+++.+..++...+ ...++.|++
T Consensus 83 ~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 83 EIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161 (350)
T ss_dssp EEEEEEETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred hhhcccCCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence 7766666667777 556799999999999995 5666654 455677888999999999999886543 356888888
Q ss_pred ccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCC
Q 043647 971 GKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAF 1050 (1096)
Q Consensus 971 ~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~ 1050 (1096)
+++ +++.++. .....++|++|++++|..++.+|.+. |..+++|+.|++++ ++|+++|..+ +.+
T Consensus 162 ~~N-~i~~i~~----------~~f~~~~L~~l~l~~~n~l~~i~~~~--f~~l~~L~~LdLs~-N~l~~lp~~~---~~~ 224 (350)
T 4ay9_X 162 NKN-GIQEIHN----------SAFNGTQLDELNLSDNNNLEELPNDV--FHGASGPVILDISR-TRIHSLPSYG---LEN 224 (350)
T ss_dssp CSS-CCCEECT----------TSSTTEEEEEEECTTCTTCCCCCTTT--TTTEECCSEEECTT-SCCCCCCSSS---CTT
T ss_pred ccc-cccCCCh----------hhccccchhHHhhccCCcccCCCHHH--hccCcccchhhcCC-CCcCccChhh---hcc
Confidence 874 5666653 34456789999999887999999753 57789999999999 6799998544 457
Q ss_pred cCeEeeccCCCCCCCCCCCccccccceeecc
Q 043647 1051 LEYLQIRDCPKLTSFPEAGLPSSLLELYIND 1081 (1096)
Q Consensus 1051 L~~L~l~~c~~l~~l~~~~l~~~L~~L~i~~ 1081 (1096)
|+.|.+.+|+.++.+|...-.++|+.+++.+
T Consensus 225 L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 225 LKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp CCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred chHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 7788888888999999755567899998854
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.55 E-value=1.6e-13 Score=147.33 Aligned_cols=157 Identities=25% Similarity=0.354 Sum_probs=96.5
Q ss_pred CCCCCCCccEEEEccCCCcccchh-hcCCCCCcCeEEEecCCCcCcCC-CCCCCCCCcCeEEEeCCCCCcccCCCCC--C
Q 043647 887 SFKYFRALQQLEILDCPKLESIAE-RFHNNTSLGCIWIWKCENLKSLP-EGLPNLNSLHNIYVWDCPSLVSFPEGGL--P 962 (1096)
Q Consensus 887 ~l~~l~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~~~--~ 962 (1096)
.+..+++|++|++++|. ++.++. .+..+++|++|++++| .++.+| ..+..+++|++|++++ +.++.++...+ .
T Consensus 56 ~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l 132 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSL 132 (270)
T ss_dssp SSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTC
T ss_pred HhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCC-CccCeeCHHHhCcC
Confidence 44555666666666654 334433 2355666666666664 344444 3345666666666666 33444443222 2
Q ss_pred CCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCc
Q 043647 963 NCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSS 1042 (1096)
Q Consensus 963 ~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~ 1042 (1096)
++|+.|+++++ .++.++. ..+..+++|++|++++| .+..++... |..+++|+.|++++ +.++.++.
T Consensus 133 ~~L~~L~Ls~n-~l~~~~~---------~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~-N~l~~~~~ 198 (270)
T 2o6q_A 133 TKLTYLSLGYN-ELQSLPK---------GVFDKLTSLKELRLYNN-QLKRVPEGA--FDKLTELKTLKLDN-NQLKRVPE 198 (270)
T ss_dssp TTCCEEECCSS-CCCCCCT---------TTTTTCTTCCEEECCSS-CCSCCCTTT--TTTCTTCCEEECCS-SCCSCCCT
T ss_pred cCCCEEECCCC-cCCccCH---------hHccCCcccceeEecCC-cCcEeChhH--hccCCCcCEEECCC-CcCCcCCH
Confidence 55555555554 2333331 24677888888888888 677777542 35678888888888 46788876
Q ss_pred CCCCCCCCcCeEeeccCC
Q 043647 1043 NGFRNLAFLEYLQIRDCP 1060 (1096)
Q Consensus 1043 ~~l~~l~~L~~L~l~~c~ 1060 (1096)
..+..+++|+.|++++++
T Consensus 199 ~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 199 GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred HHhccccCCCEEEecCCC
Confidence 667788888888888855
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.53 E-value=6e-15 Score=172.40 Aligned_cols=129 Identities=8% Similarity=-0.030 Sum_probs=69.7
Q ss_pred CCCCCCccEEEEccCCCcccchhhcC-CCCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCCCCcccCCCCCCCCcC
Q 043647 888 FKYFRALQQLEILDCPKLESIAERFH-NNTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCPSLVSFPEGGLPNCSL 966 (1096)
Q Consensus 888 l~~l~~L~~L~L~~~~~l~~l~~~~~-~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~ 966 (1096)
+..+++|+.|++++|......|..+. .+++|++|++++|. ++.+|. ...+++|+.|++++| .++.+|.
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~-------- 208 (487)
T 3oja_A 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSN-KLAFMGP-------- 208 (487)
T ss_dssp GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSS-CCCEECG--------
T ss_pred hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccc-cccCCCCCEEECCCC-CCCCCCH--------
Confidence 44555666666666653333444443 55666666666643 444432 224556666666653 3333332
Q ss_pred eEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCC-cccCcCCC
Q 043647 967 SVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKL-KYLSSNGF 1045 (1096)
Q Consensus 967 ~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l-~~l~~~~l 1045 (1096)
.+..+++|+.|++++| .+..+|... ..+++|+.|++++|+-. ..+| ..+
T Consensus 209 -------------------------~~~~l~~L~~L~Ls~N-~l~~lp~~l---~~l~~L~~L~l~~N~l~c~~~~-~~~ 258 (487)
T 3oja_A 209 -------------------------EFQSAAGVTWISLRNN-KLVLIEKAL---RFSQNLEHFDLRGNGFHCGTLR-DFF 258 (487)
T ss_dssp -------------------------GGGGGTTCSEEECTTS-CCCEECTTC---CCCTTCCEEECTTCCBCHHHHH-HHH
T ss_pred -------------------------hHcCCCCccEEEecCC-cCcccchhh---ccCCCCCEEEcCCCCCcCcchH-HHH
Confidence 3455666777777776 566666542 45666777777764422 1333 345
Q ss_pred CCCCCcCeEeec
Q 043647 1046 RNLAFLEYLQIR 1057 (1096)
Q Consensus 1046 ~~l~~L~~L~l~ 1057 (1096)
..+++|+.|+++
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 556666666664
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.52 E-value=4.2e-13 Score=144.14 Aligned_cols=191 Identities=22% Similarity=0.251 Sum_probs=135.0
Q ss_pred ccEEEEecCCCcCccCCCCC-CCccEEEEecccCc--c-ccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCC
Q 043647 818 LRQLSIVKCPRLCGRLPNHL-PILEKLMIYECVQL--V-VSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRA 893 (1096)
Q Consensus 818 L~~L~l~~c~~l~~~~p~~l-~~L~~L~l~~~~~l--~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~ 893 (1096)
.+.+++++. .++ .+|..+ ++++.|++.++... . ..+..+++|++|++++|... .+....+..+++
T Consensus 18 ~~~l~~~~~-~l~-~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------~i~~~~~~~l~~ 86 (270)
T 2o6q_A 18 KNSVDCSSK-KLT-AIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ---------TLPAGIFKELKN 86 (270)
T ss_dssp TTEEECTTS-CCS-SCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS---------CCCTTTTSSCTT
T ss_pred CCEEEccCC-CCC-ccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC---------eeChhhhcCCCC
Confidence 445555442 333 445433 34666666665321 1 24677889999999888532 334445677889
Q ss_pred ccEEEEccCCCcccch-hhcCCCCCcCeEEEecCCCcCcCC-CCCCCCCCcCeEEEeCCCCCcccCCCCC--CCCcCeEE
Q 043647 894 LQQLEILDCPKLESIA-ERFHNNTSLGCIWIWKCENLKSLP-EGLPNLNSLHNIYVWDCPSLVSFPEGGL--PNCSLSVT 969 (1096)
Q Consensus 894 L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~ 969 (1096)
|++|++++|. ++.++ ..+..+++|++|++++|. ++.+| ..+..+++|++|++++| .++.++...+ .++|+.|+
T Consensus 87 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 87 LETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELR 163 (270)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCc-CCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeE
Confidence 9999999986 45554 456889999999999964 55554 55788999999999985 5777775433 48899999
Q ss_pred EccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCC
Q 043647 970 IGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFP 1035 (1096)
Q Consensus 970 l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~ 1035 (1096)
++++ .++.++. ..+.++++|++|++++| .+..+|... +..+++|+.|++++++
T Consensus 164 L~~n-~l~~~~~---------~~~~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 164 LYNN-QLKRVPE---------GAFDKLTELKTLKLDNN-QLKRVPEGA--FDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCSS-CCSCCCT---------TTTTTCTTCCEEECCSS-CCSCCCTTT--TTTCTTCCEEECCSSC
T ss_pred ecCC-cCcEeCh---------hHhccCCCcCEEECCCC-cCCcCCHHH--hccccCCCEEEecCCC
Confidence 9886 4444432 35788999999999999 888888753 4678999999999965
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.51 E-value=7.2e-14 Score=153.55 Aligned_cols=204 Identities=13% Similarity=0.049 Sum_probs=123.1
Q ss_pred CCcceEEeccCCCccccCCCCcccccCCCC--CCCCCccEEEEccCCCcccch----hhcCCCCCcCeEEEecCCCcCcC
Q 043647 859 PLLCKLEIDRCKGVACRSPADLMSINSDSF--KYFRALQQLEILDCPKLESIA----ERFHNNTSLGCIWIWKCENLKSL 932 (1096)
Q Consensus 859 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~L~~~~~l~~l~----~~~~~l~~L~~L~l~~c~~l~~l 932 (1096)
++|++|++++|.... .....+ ..+++|++|++++|......+ ..+..+++|++|++++|......
T Consensus 91 ~~L~~L~l~~n~l~~---------~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 161 (310)
T 4glp_A 91 SRLKELTLEDLKITG---------TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFS 161 (310)
T ss_dssp SCCCEEEEESCCCBS---------CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCC
T ss_pred CceeEEEeeCCEecc---------chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhh
Confidence 456666666664322 112222 556677777777766433222 23346777777777776543334
Q ss_pred CCCCCCCCCcCeEEEeCCCCCcc--cCCC---CCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCC
Q 043647 933 PEGLPNLNSLHNIYVWDCPSLVS--FPEG---GLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGC 1007 (1096)
Q Consensus 933 p~~l~~l~~L~~L~l~~c~~l~~--l~~~---~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c 1007 (1096)
|..+..+++|++|++++|+.... ++.. .-.++|++|++++| +++.++. .....+.++++|++|++++|
T Consensus 162 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~------~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 162 CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTG------VCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHH------HHHHHHHHTCCCSSEECTTS
T ss_pred HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHH------HHHHHHhcCCCCCEEECCCC
Confidence 45667777777777777543321 2211 12356777777775 3333221 00001356788888888888
Q ss_pred CCcccc-ccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCCCCCccccccceeeccCcc
Q 043647 1008 PDAVSF-PEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFPEAGLPSSLLELYINDYPL 1084 (1096)
Q Consensus 1008 ~~l~~l-~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~l~~~L~~L~i~~c~~ 1084 (1096)
.+..+ |.....+..+++|++|++++ +.++.+| ..+. ++|+.|++++ +.++.+|.....++|+.|++++++-
T Consensus 235 -~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp-~~~~--~~L~~L~Ls~-N~l~~~~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 235 -SLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVP-KGLP--AKLRVLDLSS-NRLNRAPQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp -CCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCC-SCCC--SCCSCEECCS-CCCCSCCCTTSCCCCSCEECSSTTT
T ss_pred -CCCccchhhHHhccCcCcCCEEECCC-CCCCchh-hhhc--CCCCEEECCC-CcCCCCchhhhCCCccEEECcCCCC
Confidence 56655 65443333357888888888 5688887 3443 7888888888 6778776644567888888888763
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.50 E-value=7e-14 Score=153.12 Aligned_cols=195 Identities=15% Similarity=0.183 Sum_probs=150.3
Q ss_pred CCCCccEEEEecccCc-cccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCC
Q 043647 836 HLPILEKLMIYECVQL-VVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHN 914 (1096)
Q Consensus 836 ~l~~L~~L~l~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~ 914 (1096)
.+++|+.|.+.+|.-. ...+..+++|+.|++++|.... +. .+..+++|++|++++|. ++.++ .+..
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~---------~~--~~~~l~~L~~L~L~~n~-l~~~~-~~~~ 105 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD---------LA--PLKNLTKITELELSGNP-LKNVS-AIAG 105 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC---------CG--GGTTCCSCCEEECCSCC-CSCCG-GGTT
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCC---------Ch--hHccCCCCCEEEccCCc-CCCch-hhcC
Confidence 3678899999887532 1256678999999999986432 11 16788899999999987 66665 5888
Q ss_pred CCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCCCCcccCCCCCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCC
Q 043647 915 NTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCPSLVSFPEGGLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLH 994 (1096)
Q Consensus 915 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~ 994 (1096)
+++|++|++++| .++.+|. +..+++|++|++++| .++.++...-.++|+.|++++| .++.++ .+.
T Consensus 106 l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n-~l~~~~-----------~l~ 170 (308)
T 1h6u_A 106 LQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNA-QVSDLT-----------PLA 170 (308)
T ss_dssp CTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSS-CCCCCG-----------GGT
T ss_pred CCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCC-cCCCCh-----------hhc
Confidence 999999999996 4666664 888999999999985 5666665444588999999987 455554 477
Q ss_pred CCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCCC
Q 043647 995 KLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFPE 1067 (1096)
Q Consensus 995 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~ 1067 (1096)
.+++|++|++++| .+..++. +..+++|+.|++++ +.++.++ .+..+++|+.|++++| .++..|.
T Consensus 171 ~l~~L~~L~l~~n-~l~~~~~----l~~l~~L~~L~L~~-N~l~~~~--~l~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 171 NLSKLTTLKADDN-KISDISP----LASLPNLIEVHLKN-NQISDVS--PLANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp TCTTCCEEECCSS-CCCCCGG----GGGCTTCCEEECTT-SCCCBCG--GGTTCTTCCEEEEEEE-EEECCCE
T ss_pred CCCCCCEEECCCC-ccCcChh----hcCCCCCCEEEccC-CccCccc--cccCCCCCCEEEccCC-eeecCCe
Confidence 8899999999999 7777775 36788999999999 4688886 3788999999999994 4566553
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.50 E-value=1.6e-13 Score=148.04 Aligned_cols=201 Identities=19% Similarity=0.193 Sum_probs=105.6
Q ss_pred cCCCCCC-CccEEEEecccCcc---ccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCccc
Q 043647 832 RLPNHLP-ILEKLMIYECVQLV---VSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLES 907 (1096)
Q Consensus 832 ~~p~~l~-~L~~L~l~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~ 907 (1096)
.+|..++ +|+.|+++++.-.. ..+..+++|++|++++|... .+....+..+++|++|++++|.....
T Consensus 21 ~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 21 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---------TIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp SCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC---------EECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred ccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC---------ccCHHHccCCcCCCEEECCCCccCcc
Confidence 4555443 47777777664321 14556777777777776422 22333456667777777777653333
Q ss_pred chhhcCCCCCcCeEEEecCCCcCcCC-CCCCCCCCcCeEEEeCCCCCcc--cCCC-CCCCCcCeEEEccCcCCcCCCCCC
Q 043647 908 IAERFHNNTSLGCIWIWKCENLKSLP-EGLPNLNSLHNIYVWDCPSLVS--FPEG-GLPNCSLSVTIGKCEKLKALPNLN 983 (1096)
Q Consensus 908 l~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~--l~~~-~~~~~L~~L~l~~c~~l~~l~~l~ 983 (1096)
.+..+..+++|++|++++|. +..++ ..+..+++|++|++++|. ++. +|.. .-.++|+.|++++|. ++.++.
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~-- 166 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYC-- 166 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC-CCEECG--
T ss_pred ChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCC-CCcCCH--
Confidence 33556677777777777753 33333 356677777777777643 333 2211 112555556555542 222110
Q ss_pred CCCCCCcccCCCCCCcc----eEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeecc
Q 043647 984 AYESPIDWGLHKLTSLK----ILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRD 1058 (1096)
Q Consensus 984 ~~~~~~~~~l~~l~~L~----~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~ 1058 (1096)
..+..+++|+ +|++++| .+..++... ....+|+.|++++ +.++.+|...+..+++|+.|++++
T Consensus 167 -------~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~---~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 167 -------TDLRVLHQMPLLNLSLDLSLN-PMNFIQPGA---FKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp -------GGGHHHHTCTTCCEEEECCSS-CCCEECTTS---SCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCS
T ss_pred -------HHhhhhhhccccceeeecCCC-cccccCccc---cCCCcccEEECCC-CceeecCHhHhcccccccEEEccC
Confidence 1222233333 5555555 445544432 1223556666655 335555544455555666666655
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.48 E-value=3.1e-13 Score=145.29 Aligned_cols=174 Identities=24% Similarity=0.295 Sum_probs=80.9
Q ss_pred CCCccEEEEecccCc-cccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccch-hhcCC
Q 043647 837 LPILEKLMIYECVQL-VVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIA-ERFHN 914 (1096)
Q Consensus 837 l~~L~~L~l~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~-~~~~~ 914 (1096)
+++|+.|.+.++... ...+..+++|+.|++++|.... ...+..+++|++|++++|. ++.++ ..+..
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-----------~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~ 107 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-----------ISALKELTNLTYLILTGNQ-LQSLPNGVFDK 107 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-----------CGGGTTCTTCCEEECTTSC-CCCCCTTTTTT
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-----------chhhcCCCCCCEEECCCCc-cCccChhHhcC
Confidence 445555555554321 1124445555555555553221 1123444555555555553 22322 22345
Q ss_pred CCCcCeEEEecCCCcCcCC-CCCCCCCCcCeEEEeCCCCCcccCCCCCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccC
Q 043647 915 NTSLGCIWIWKCENLKSLP-EGLPNLNSLHNIYVWDCPSLVSFPEGGLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGL 993 (1096)
Q Consensus 915 l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l 993 (1096)
+++|++|++++|. ++.+| ..+..+++|+.|++++| .++.++.. .+
T Consensus 108 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~--------------------------------~~ 153 (272)
T 3rfs_A 108 LTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKG--------------------------------VF 153 (272)
T ss_dssp CTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT--------------------------------TT
T ss_pred CcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHH--------------------------------Hh
Confidence 5555555555532 33332 22445555555555553 33333322 24
Q ss_pred CCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCC
Q 043647 994 HKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCP 1060 (1096)
Q Consensus 994 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~ 1060 (1096)
.++++|+.|++++| .+..++... +..+++|+.|++++ +.++.++...+..+++|+.|++++|+
T Consensus 154 ~~l~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 154 DKLTNLTELDLSYN-QLQSLPEGV--FDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCccCCEEECCCC-CcCccCHHH--hcCCccCCEEECCC-CcCCccCHHHHhCCcCCCEEEccCCC
Confidence 45555555555555 444444421 23455555555555 33555544445555555555555543
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.48 E-value=4.1e-14 Score=155.02 Aligned_cols=95 Identities=23% Similarity=0.296 Sum_probs=48.5
Q ss_pred CCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceEEec
Q 043647 555 FTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLVVT 634 (1096)
Q Consensus 555 ~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~ 634 (1096)
+++|+.|+++++.+..+| .+..+++|++|++++|.+..+|. +..+++|++|++++| .+..+| .+..+++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECT
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECC
Confidence 444555555555555544 35555555555555555555544 555555555555553 344443 35555555555555
Q ss_pred cccccccCcccCCCCCCCCcC
Q 043647 635 YVDLIREMPLGIKELKCLQML 655 (1096)
Q Consensus 635 ~~~~~~~~p~~i~~L~~L~~L 655 (1096)
+|. +..+|. ++.+++|++|
T Consensus 116 ~n~-l~~~~~-l~~l~~L~~L 134 (308)
T 1h6u_A 116 STQ-ITDVTP-LAGLSNLQVL 134 (308)
T ss_dssp TSC-CCCCGG-GTTCTTCCEE
T ss_pred CCC-CCCchh-hcCCCCCCEE
Confidence 554 344432 4444444444
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.47 E-value=7.8e-13 Score=143.19 Aligned_cols=193 Identities=20% Similarity=0.186 Sum_probs=144.5
Q ss_pred cccccccEEEEecCCCcCccCCCC-CCCccEEEEecccCc---cccCCCCCCcceEEeccCCCccccCCCCcccccCCCC
Q 043647 813 ERFACLRQLSIVKCPRLCGRLPNH-LPILEKLMIYECVQL---VVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSF 888 (1096)
Q Consensus 813 ~~~~~L~~L~l~~c~~l~~~~p~~-l~~L~~L~l~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 888 (1096)
+.+++++.+++.++ .++ .+|.. .++++.|++.++... ...+..+++|+.|++++|..... . ..
T Consensus 7 ~~l~~l~~l~~~~~-~l~-~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---------~--~~ 73 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL---------Q--VD 73 (290)
T ss_dssp ECSTTCCEEECTTS-CCS-SCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE---------E--CC
T ss_pred cccCCccEEECCCC-CCC-cCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc---------c--CC
Confidence 34555666666553 343 45433 345777777665432 23577889999999999864431 1 12
Q ss_pred CCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCC-CCCCCCCCcCeEEEeCCCCCcccCCCCC--CCCc
Q 043647 889 KYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLP-EGLPNLNSLHNIYVWDCPSLVSFPEGGL--PNCS 965 (1096)
Q Consensus 889 ~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L 965 (1096)
..+++|++|++++|. ++.+|..+..+++|++|++++| .++.+| ..+..+++|+.|++++ +.++.+|...+ .++|
T Consensus 74 ~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKL 150 (290)
T ss_dssp SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTC
T ss_pred CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCC
Confidence 578899999999986 6788888899999999999995 566666 5689999999999999 46777876544 3889
Q ss_pred CeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCC
Q 043647 966 LSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFP 1035 (1096)
Q Consensus 966 ~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~ 1035 (1096)
+.|+++++ +++.++. ..+.++++|+.|++++| .+..+|... ...++|+.|++++++
T Consensus 151 ~~L~L~~N-~l~~l~~---------~~~~~l~~L~~L~L~~N-~l~~ip~~~---~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 151 EKLSLANN-NLTELPA---------GLLNGLENLDTLLLQEN-SLYTIPKGF---FGSHLLPFAFLHGNP 206 (290)
T ss_dssp CEEECTTS-CCSCCCT---------TTTTTCTTCCEEECCSS-CCCCCCTTT---TTTCCCSEEECCSCC
T ss_pred CEEECCCC-cCCccCH---------HHhcCcCCCCEEECCCC-cCCccChhh---cccccCCeEEeCCCC
Confidence 99999986 5666553 35788999999999999 889999864 456799999999855
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.47 E-value=4.2e-13 Score=144.84 Aligned_cols=195 Identities=16% Similarity=0.205 Sum_probs=131.2
Q ss_pred CCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccch-hhcCCCCCcCeEEEecCCCcCcCCCCCC
Q 043647 859 PLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIA-ERFHNNTSLGCIWIWKCENLKSLPEGLP 937 (1096)
Q Consensus 859 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~l~ 937 (1096)
++|++|++++|... .+....+..+++|++|++++|. ++.++ ..+..+++|++|++++|......|..+.
T Consensus 28 ~~l~~L~ls~n~l~---------~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 28 FSTKNLDLSFNPLR---------HLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp TTCCEEECTTCCCC---------EECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred CCccEEECCCCccc---------ccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence 46888888888533 2334456778888888888885 44543 4677888888888888643333346678
Q ss_pred CCCCcCeEEEeCCCCCcccCCCC--CCCCcCeEEEccCcCCcC--CCCCCCCCCCCcccCCCCCCcceEEEcCCCCcccc
Q 043647 938 NLNSLHNIYVWDCPSLVSFPEGG--LPNCSLSVTIGKCEKLKA--LPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSF 1013 (1096)
Q Consensus 938 ~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~~l~~--l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l 1013 (1096)
.+++|++|++++| .+..++... -.++|++|+++++. ++. ++ ..+.++++|++|++++| .+..+
T Consensus 98 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~----------~~~~~l~~L~~L~Ls~N-~l~~~ 164 (276)
T 2z62_A 98 GLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLP----------EYFSNLTNLEHLDLSSN-KIQSI 164 (276)
T ss_dssp TCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCC----------GGGGGCTTCCEEECCSS-CCCEE
T ss_pred CCccccEEECCCC-CccccCchhcccCCCCCEEECcCCc-cceecCc----------hhhccCCCCCEEECCCC-CCCcC
Confidence 8888888888874 455554422 23788888888754 332 23 36777888888888888 66666
Q ss_pred ccccccCcCCCCcc----EEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCCCCCc--cccccceeecc
Q 043647 1014 PEEEIGMTFPSSLT----ELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFPEAGL--PSSLLELYIND 1081 (1096)
Q Consensus 1014 ~~~~~~~~~~~sL~----~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~l--~~~L~~L~i~~ 1081 (1096)
+... +..+++|+ .|++++ +.++.++...+ ...+|++|++++ +.++.+|...+ .++|+.|++++
T Consensus 165 ~~~~--~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~-~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 165 YCTD--LRVLHQMPLLNLSLDLSL-NPMNFIQPGAF-KEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp CGGG--GHHHHTCTTCCEEEECCS-SCCCEECTTSS-CSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCS
T ss_pred CHHH--hhhhhhccccceeeecCC-CcccccCcccc-CCCcccEEECCC-CceeecCHhHhcccccccEEEccC
Confidence 5432 23334444 788888 56787774444 345788888888 56788876433 56788888884
No 91
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.45 E-value=8.4e-13 Score=148.20 Aligned_cols=236 Identities=14% Similarity=0.161 Sum_probs=147.5
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCcc------ChHH
Q 043647 176 TEPAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDF------DILR 249 (1096)
Q Consensus 176 ~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~------~~~~ 249 (1096)
.+..|+||+++++++.+++... +++.|+|++|+|||||++.+++.. + .+|+++.... +...
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~-------~~v~i~G~~G~GKT~Ll~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~ 76 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY-------PLTLLLGIRRVGKSSLLRAFLNER-----P-GILIDCRELYAERGHITREE 76 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC-------SEEEEECCTTSSHHHHHHHHHHHS-----S-EEEEEHHHHHHTTTCBCHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC-------CeEEEECCCcCCHHHHHHHHHHHc-----C-cEEEEeecccccccCCCHHH
Confidence 3567999999999999988431 689999999999999999998753 2 6777765432 5566
Q ss_pred HHHHHHHhccC----------------CCC--CCCcHHHHHHHHHHHhCC-CcEEEEEecCCCCCh-------hhHHHhh
Q 043647 250 ITKSILESITF----------------SPN--SLKDLNQIQVQLREAVAG-KRFLIVLDDVWSKNY-------SLWNTLK 303 (1096)
Q Consensus 250 ~~~~i~~~l~~----------------~~~--~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~-------~~~~~l~ 303 (1096)
+++.+...+.. ... ...+..++...+.+..+. ++++|||||++..+. ..+..+.
T Consensus 77 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~ 156 (350)
T 2qen_A 77 LIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFA 156 (350)
T ss_dssp HHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHH
Confidence 66666665532 000 123455666666665542 389999999976421 2233333
Q ss_pred cccCCCCCCcEEEEEcCchhhhhhc-----------CC-cceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHH
Q 043647 304 SPFRAGASGSKILVTTCSTDVALTV-----------GT-AEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKV 371 (1096)
Q Consensus 304 ~~l~~~~~gs~iivTtR~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i 371 (1096)
..+.. ..+.++|+|++.......+ +. ...+.+.+|+.+|+.+++.......+ . ....+.+.+|
T Consensus 157 ~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~-~---~~~~~~~~~i 231 (350)
T 2qen_A 157 YAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN-L---DVPENEIEEA 231 (350)
T ss_dssp HHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT-C---CCCHHHHHHH
T ss_pred HHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHH
Confidence 22222 2467899998875431111 11 23789999999999999987542111 1 1123567899
Q ss_pred HHHhCCCchhHHHHHHHhccCCCHHHHH-HHHhhhccccccCCChHHHHHHHHhcC---chhhHHHhhhhcc
Q 043647 372 VQKCRGLPLAAETLGGLLRCKQSDDEWD-EILNSKIWYLSEESNILPVLRLSYHHL---PSHLKRCFAYCAI 439 (1096)
Q Consensus 372 ~~~~~g~PLai~~~~~~l~~~~~~~~w~-~~~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~~f~~~a~ 439 (1096)
++.++|+|+++..++..+....+...+. .+.+. +...+.-.+..+ ++..+..+..+|.
T Consensus 232 ~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~l~~~~~~~~~~l~~la~ 293 (350)
T 2qen_A 232 VELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV----------AKGLIMGELEELRRRSPRYVDILRAIAL 293 (350)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHCHHHHHHHHHHHT
T ss_pred HHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH----------HHHHHHHHHHHHHhCChhHHHHHHHHHh
Confidence 9999999999999887653222222221 11111 111111112222 7788888888887
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.44 E-value=6.7e-15 Score=164.29 Aligned_cols=202 Identities=15% Similarity=0.114 Sum_probs=138.6
Q ss_pred CcceEEEecccccccCCCCcCCCCccceeecccccccc--cccccccCCCCcEEeccCcccCcccCccccCCCCCceEEe
Q 043647 556 TKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRC--LPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLVV 633 (1096)
Q Consensus 556 ~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l 633 (1096)
+++++|+++++.+...+..+..+++|++|++++|.+.. +|..+..+++|++|++++|......|..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 67899999999988877778889999999999998873 7888899999999999998544467777888999999999
Q ss_pred ccccccc--cCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCC-C
Q 043647 634 TYVDLIR--EMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHR-S 710 (1096)
Q Consensus 634 ~~~~~~~--~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~-~ 710 (1096)
++|..+. .+|..++.+++|++|....... + ........+..++ +
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~--------------l-------------------~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFD--------------F-------------------TEKHVQVAVAHVSET 196 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTT--------------C-------------------CHHHHHHHHHHSCTT
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC--------------c-------------------ChHHHHHHHHhcccC
Confidence 9984344 2555566677777764211100 0 0011222344456 8
Q ss_pred CCeEEEeeeCC----CCCCcccCCccccceeEEeecCCCCCC--CCCCCCCcCCcceeecccccceeEecccccCCCCCC
Q 043647 711 LKELTVKCYGG----TVFPSWMGDPLFSNIVLLRLEDCEKCT--SLPSLGLLGSLKNLTIKGMRRLKSIGFEIYGEGCSK 784 (1096)
Q Consensus 711 L~~L~l~~~~~----~~~p~~~~~~~~~~L~~L~L~~~~~~~--~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 784 (1096)
|+.|+++++.. ..+|..+.. +++|+.|++++|..++ .++.++.+++|+.|++++|..+...... .+.
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~--~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~l~ 269 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRR--CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL-----ELG 269 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHH--CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG-----GGG
T ss_pred CCEEEeCCCcccCCHHHHHHHHhh--CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHH-----HHh
Confidence 88888887742 223444332 7888999998887433 3446778888999988887643322211 123
Q ss_pred CCCCCceecccCC
Q 043647 785 PFQALETLCFEDL 797 (1096)
Q Consensus 785 ~~~~L~~L~l~~~ 797 (1096)
.+++|+.|++.++
T Consensus 270 ~~~~L~~L~l~~~ 282 (336)
T 2ast_B 270 EIPTLKTLQVFGI 282 (336)
T ss_dssp GCTTCCEEECTTS
T ss_pred cCCCCCEEeccCc
Confidence 3777888888776
No 93
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.43 E-value=3.8e-13 Score=147.78 Aligned_cols=179 Identities=15% Similarity=0.070 Sum_probs=101.2
Q ss_pred CCCCCccEEEEccCCCcccchhhcCCC-----CCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCCCCccc--C-CC-
Q 043647 889 KYFRALQQLEILDCPKLESIAERFHNN-----TSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCPSLVSF--P-EG- 959 (1096)
Q Consensus 889 ~~l~~L~~L~L~~~~~l~~l~~~~~~l-----~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l--~-~~- 959 (1096)
..+++|++|++++|. ++.+|..+..+ ++|++|++++|......|..+..+++|++|++++|.....+ + ..
T Consensus 118 ~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 456666666666664 33334444333 66777777665432223356666677777777665433221 1 11
Q ss_pred -CCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccc-cccccCcCCCCccEEEeccCCCC
Q 043647 960 -GLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFP-EEEIGMTFPSSLTELVIVRFPKL 1037 (1096)
Q Consensus 960 -~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~~~sL~~L~l~~c~~l 1037 (1096)
.-.++|++|++++|. ++.++. .....+.++++|++|++++| .+...+ .. .+..+++|+.|++++ +.+
T Consensus 197 ~~~l~~L~~L~L~~N~-l~~~~~------~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~~l~~L~~L~Ls~-N~l 265 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAG-METPSG------VCSALAAARVQLQGLDLSHN-SLRDAAGAP--SCDWPSQLNSLNLSF-TGL 265 (312)
T ss_dssp TTSCTTCCEEECTTSC-CCCHHH------HHHHHHHTTCCCSEEECTTS-CCCSSCCCS--CCCCCTTCCEEECTT-SCC
T ss_pred hccCCCCCEEECCCCc-CcchHH------HHHHHHhcCCCCCEEECCCC-cCCcccchh--hhhhcCCCCEEECCC-Ccc
Confidence 223566667766652 332110 00012345677777888777 555533 11 124467778888777 457
Q ss_pred cccCcCCCCCCCCcCeEeeccCCCCCCCCCCCccccccceeeccCc
Q 043647 1038 KYLSSNGFRNLAFLEYLQIRDCPKLTSFPEAGLPSSLLELYINDYP 1083 (1096)
Q Consensus 1038 ~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~l~~~L~~L~i~~c~ 1083 (1096)
+.+| ..+. ++|++|++++ ++++.+|...-.++|++|++++++
T Consensus 266 ~~ip-~~~~--~~L~~L~Ls~-N~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 266 KQVP-KGLP--AKLSVLDLSY-NRLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp SSCC-SSCC--SEEEEEECCS-SCCCSCCCTTTSCEEEEEECTTCT
T ss_pred Chhh-hhcc--CCceEEECCC-CCCCCChhHhhCCCCCEEeccCCC
Confidence 7777 3333 6778888877 567777664445677777777775
No 94
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.42 E-value=5.1e-13 Score=153.68 Aligned_cols=255 Identities=13% Similarity=0.044 Sum_probs=157.1
Q ss_pred CCccccchHHHHHHHHHH-hcCCCC-CCCceEEEE--EcCCCCcHHHHHHHHhcccccc----ccC-cEEEEEecCccCh
Q 043647 177 EPAVFGRDEDKAKILEMV-LRDEPT-DANFSLIPI--VGMAGVGKTTLARVAFDDKAVE----MFN-LRSWVCVSDDFDI 247 (1096)
Q Consensus 177 ~~~~vgr~~~~~~l~~~L-~~~~~~-~~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~----~f~-~~~wv~~~~~~~~ 247 (1096)
+..++||+++++++.+++ .....+ ....+.+.| +|++|+||||||+.+++..... .++ .++|+.+....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999988 421111 012356666 9999999999999999764321 122 3567777677788
Q ss_pred HHHHHHHHHhccCCCCC-CCcHHHHHHHHHHHhC--CCcEEEEEecCCCCC------hhhHHHhhcccCCC---C--CCc
Q 043647 248 LRITKSILESITFSPNS-LKDLNQIQVQLREAVA--GKRFLIVLDDVWSKN------YSLWNTLKSPFRAG---A--SGS 313 (1096)
Q Consensus 248 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~~~l~~~l~~~---~--~gs 313 (1096)
..++..++.+++..... ..+...+...+.+.+. +++++|||||+|... ...+..+...+... + ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 89999999988754321 2334555666666664 789999999997631 23344333333221 2 344
Q ss_pred EEEEEcCchhhhhhcC---------CcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhC------CC
Q 043647 314 KILVTTCSTDVALTVG---------TAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCR------GL 378 (1096)
Q Consensus 314 ~iivTtR~~~v~~~~~---------~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~------g~ 378 (1096)
.||+||+...+...+. ....+.+++++.++++++|...+..... ...-..+....|++.++ |.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR--DTVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC--TTSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCC--CCCCChHHHHHHHHHHHHhccCCCc
Confidence 5888887665332111 1123999999999999999765421100 01122456788999999 99
Q ss_pred chhHHHHHHHh---c---cC--CCHHHHHHHHhhhccccccCCChHHHHHHHHhcCchhhHHHhhhhcccC
Q 043647 379 PLAAETLGGLL---R---CK--QSDDEWDEILNSKIWYLSEESNILPVLRLSYHHLPSHLKRCFAYCAIFP 441 (1096)
Q Consensus 379 PLai~~~~~~l---~---~~--~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp 441 (1096)
|..+..+.... . .. -+.+.+..+...... ...+.-++..||++.+.++..+|.+.
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~--------~~~~~~~l~~l~~~~~~~l~aia~l~ 321 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA--------ASIQTHELEALSIHELIILRLIAEAT 321 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC--------------CCSSSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc--------cchHHHHHHcCCHHHHHHHHHHHHHH
Confidence 97655444321 1 11 123444444432110 22334456789999999998888653
No 95
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.40 E-value=2.5e-12 Score=138.09 Aligned_cols=177 Identities=23% Similarity=0.305 Sum_probs=128.8
Q ss_pred CCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCC-
Q 043647 855 FSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLP- 933 (1096)
Q Consensus 855 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp- 933 (1096)
...+++|+.|++++|.... ...+..+++|++|++++|. ++.++ .+..+++|++|++++| .++.+|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-----------~~~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~ 102 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-----------VQGIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGN-QLQSLPN 102 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-----------CTTGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTS-CCCCCCT
T ss_pred cccccceeeeeeCCCCccc-----------ccccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCC-ccCccCh
Confidence 3446778888888775322 2235567778888888775 44443 5677777888888775 344444
Q ss_pred CCCCCCCCcCeEEEeCCCCCcccCCCCCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCcccc
Q 043647 934 EGLPNLNSLHNIYVWDCPSLVSFPEGGLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSF 1013 (1096)
Q Consensus 934 ~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l 1013 (1096)
..+..+++|++|++++|. ++.++. ..+.++++|++|++++| .+..+
T Consensus 103 ~~~~~l~~L~~L~L~~n~-l~~~~~--------------------------------~~~~~l~~L~~L~L~~n-~l~~~ 148 (272)
T 3rfs_A 103 GVFDKLTNLKELVLVENQ-LQSLPD--------------------------------GVFDKLTNLTYLNLAHN-QLQSL 148 (272)
T ss_dssp TTTTTCTTCCEEECTTSC-CCCCCT--------------------------------TTTTTCTTCCEEECCSS-CCCCC
T ss_pred hHhcCCcCCCEEECCCCc-CCccCH--------------------------------HHhccCCCCCEEECCCC-ccCcc
Confidence 345677777777777743 333332 14678899999999999 78888
Q ss_pred ccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCCCCCc--cccccceeeccCc
Q 043647 1014 PEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFPEAGL--PSSLLELYINDYP 1083 (1096)
Q Consensus 1014 ~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~l--~~~L~~L~i~~c~ 1083 (1096)
|... +..+++|+.|++++| +++.++...+..+++|+.|++++ +.++.++...+ .++|+.|++++|+
T Consensus 149 ~~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 149 PKGV--FDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CTTT--TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CHHH--hccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCC-CcCCccCHHHHhCCcCCCEEEccCCC
Confidence 8643 467899999999995 68888867789999999999999 56888887443 6799999998864
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.40 E-value=3.7e-12 Score=135.06 Aligned_cols=174 Identities=18% Similarity=0.164 Sum_probs=116.4
Q ss_pred CCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcC-CCCCC
Q 043647 859 PLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSL-PEGLP 937 (1096)
Q Consensus 859 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~ 937 (1096)
++.++++++++.... ++.. -.++|+.|++++|......+..+..+++|++|++++|. ++.+ |..+.
T Consensus 14 ~~~~~l~~~~~~l~~---------~p~~---~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 80 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS---------VPSG---IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFD 80 (251)
T ss_dssp GGGTEEECTTCCCSS---------CCSC---CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTT
T ss_pred CCCeEEecCCCCccc---------cCCC---CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhc
Confidence 456677777764332 1111 12578999999887444445567888999999999864 4444 45578
Q ss_pred CCCCcCeEEEeCCCCCcccCCCCC--CCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCcccccc
Q 043647 938 NLNSLHNIYVWDCPSLVSFPEGGL--PNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPE 1015 (1096)
Q Consensus 938 ~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~ 1015 (1096)
.+++|+.|++++ +.++.++...+ .++|++|+++++ .++.++. ..+.++++|++|++++| .+..+|.
T Consensus 81 ~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~---------~~~~~l~~L~~L~Ls~N-~l~~~~~ 148 (251)
T 3m19_A 81 DLTELGTLGLAN-NQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPS---------GVFDRLTKLKELRLNTN-QLQSIPA 148 (251)
T ss_dssp TCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT---------TTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred cCCcCCEEECCC-CcccccChhHhcccCCCCEEEcCCC-cCCCcCh---------hHhccCCcccEEECcCC-cCCccCH
Confidence 889999999988 45666664432 367777777775 4444442 23567777888888777 6777665
Q ss_pred ccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCC
Q 043647 1016 EEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCP 1060 (1096)
Q Consensus 1016 ~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~ 1060 (1096)
.. +..+++|+.|++++ +.++.++...+..+++|+.|++++++
T Consensus 149 ~~--~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 149 GA--FDKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TT--TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred HH--cCcCcCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 32 35667777887777 56777765667777777777777743
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.39 E-value=1.7e-12 Score=142.62 Aligned_cols=185 Identities=12% Similarity=0.036 Sum_probs=119.7
Q ss_pred CCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCc--C-
Q 043647 856 SSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKS--L- 932 (1096)
Q Consensus 856 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~--l- 932 (1096)
..+++|++|++++|....... ......+..+++|++|++++|......+..+..+++|++|++++|+.... +
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~-----~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 188 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRS-----WLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLM 188 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTS-----SHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHH
T ss_pred ccCCCCCEEEeecccccchhh-----hhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhh
Confidence 456677777777775332100 00011223567788888888765444455677788888888888654321 2
Q ss_pred -CCCCCCCCCcCeEEEeCCCCCcccCCC-----CCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcC
Q 043647 933 -PEGLPNLNSLHNIYVWDCPSLVSFPEG-----GLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIG 1006 (1096)
Q Consensus 933 -p~~l~~l~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~ 1006 (1096)
+..+..+++|++|++++| .++.++.. ...++|++|+++++.--...|. ....+..+++|++|++++
T Consensus 189 ~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~-------~~~~~~~~~~L~~L~Ls~ 260 (310)
T 4glp_A 189 AALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP-------SAPRCMWSSALNSLNLSF 260 (310)
T ss_dssp TTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS-------CCSSCCCCTTCCCEECCS
T ss_pred HHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh-------hHHhccCcCcCCEEECCC
Confidence 233467788888888875 45544431 1236788888887643222231 001233347999999999
Q ss_pred CCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCC
Q 043647 1007 CPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLT 1063 (1096)
Q Consensus 1007 c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~ 1063 (1096)
| .++.+|.. .+++|+.|++++ |+++.+| .+..+++|+.|++++ +.++
T Consensus 261 N-~l~~lp~~-----~~~~L~~L~Ls~-N~l~~~~--~~~~l~~L~~L~L~~-N~l~ 307 (310)
T 4glp_A 261 A-GLEQVPKG-----LPAKLRVLDLSS-NRLNRAP--QPDELPEVDNLTLDG-NPFL 307 (310)
T ss_dssp S-CCCSCCSC-----CCSCCSCEECCS-CCCCSCC--CTTSCCCCSCEECSS-TTTS
T ss_pred C-CCCchhhh-----hcCCCCEEECCC-CcCCCCc--hhhhCCCccEEECcC-CCCC
Confidence 9 78899874 358999999999 6789887 378899999999999 4444
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.39 E-value=7.9e-13 Score=143.33 Aligned_cols=168 Identities=19% Similarity=0.242 Sum_probs=125.1
Q ss_pred CCCCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceEE
Q 043647 553 PKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLV 632 (1096)
Q Consensus 553 ~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 632 (1096)
..+++|+.|++++|.+..++ .+..+++|++|++++|.++.+|. +.++++|++|++++| .+..+|. +..+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEE
Confidence 35677899999999888885 48888999999999999988877 889999999999986 5777765 88899999999
Q ss_pred eccccccccCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCC
Q 043647 633 VTYVDLIREMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLK 712 (1096)
Q Consensus 633 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 712 (1096)
+++|. +..+ ..++.+++|+.|..... .+..+ ..+..+++|+
T Consensus 119 L~~n~-i~~~-~~l~~l~~L~~L~l~~n------~l~~~-------------------------------~~l~~l~~L~ 159 (291)
T 1h6t_A 119 LEHNG-ISDI-NGLVHLPQLESLYLGNN------KITDI-------------------------------TVLSRLTKLD 159 (291)
T ss_dssp CTTSC-CCCC-GGGGGCTTCCEEECCSS------CCCCC-------------------------------GGGGGCTTCS
T ss_pred CCCCc-CCCC-hhhcCCCCCCEEEccCC------cCCcc-------------------------------hhhccCCCCC
Confidence 99887 5555 35666777766642111 11110 1244467788
Q ss_pred eEEEeeeCCCCCCcccCCccccceeEEeecCCCCCCCCCCCCCcCCcceeecccc
Q 043647 713 ELTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCTSLPSLGLLGSLKNLTIKGM 767 (1096)
Q Consensus 713 ~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~ 767 (1096)
.|++++|....++. +.. +++|+.|++++|. ++.++.+..+++|+.|+++++
T Consensus 160 ~L~L~~N~l~~~~~-l~~--l~~L~~L~L~~N~-i~~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 160 TLSLEDNQISDIVP-LAG--LTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp EEECCSSCCCCCGG-GTT--CTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEEE
T ss_pred EEEccCCccccchh-hcC--CCccCEEECCCCc-CCCChhhccCCCCCEEECcCC
Confidence 88888888777765 333 7888888888884 456777888888888888875
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.38 E-value=5.9e-12 Score=133.45 Aligned_cols=153 Identities=20% Similarity=0.247 Sum_probs=97.6
Q ss_pred CCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCC-CCCC
Q 043647 859 PLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLP-EGLP 937 (1096)
Q Consensus 859 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~ 937 (1096)
++|+.|++++|... .+....+..+++|++|++++|......+..+..+++|++|++++| .++.+| ..+.
T Consensus 35 ~~l~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 104 (251)
T 3m19_A 35 ADTEKLDLQSTGLA---------TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFD 104 (251)
T ss_dssp TTCCEEECTTSCCC---------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTT
T ss_pred CCCCEEEccCCCcC---------ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHhc
Confidence 34556666655422 222334556667777777776533333444566777777777774 344444 4456
Q ss_pred CCCCcCeEEEeCCCCCcccCCCCC--CCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCcccccc
Q 043647 938 NLNSLHNIYVWDCPSLVSFPEGGL--PNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPE 1015 (1096)
Q Consensus 938 ~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~ 1015 (1096)
.+++|++|+++++ .++.++...+ .++|+.|+++++ +++.++. ..+.++++|++|++++| .+..++.
T Consensus 105 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~---------~~~~~l~~L~~L~L~~N-~l~~~~~ 172 (251)
T 3m19_A 105 HLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPA---------GAFDKLTNLQTLSLSTN-QLQSVPH 172 (251)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT---------TTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred ccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCH---------HHcCcCcCCCEEECCCC-cCCccCH
Confidence 6777777777763 5556654332 366777777765 4444432 25788999999999999 7888886
Q ss_pred ccccCcCCCCccEEEeccCC
Q 043647 1016 EEIGMTFPSSLTELVIVRFP 1035 (1096)
Q Consensus 1016 ~~~~~~~~~sL~~L~l~~c~ 1035 (1096)
.. +..+++|+.|++++++
T Consensus 173 ~~--~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 173 GA--FDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TT--TTTCTTCCEEECCSCC
T ss_pred HH--HhCCCCCCEEEeeCCc
Confidence 42 4678999999999954
No 100
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.38 E-value=5.1e-12 Score=142.21 Aligned_cols=238 Identities=12% Similarity=0.113 Sum_probs=142.8
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCc-----cChHHH
Q 043647 176 TEPAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDD-----FDILRI 250 (1096)
Q Consensus 176 ~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~-----~~~~~~ 250 (1096)
.+..|+||+++++++.+ +.. +++.|+|++|+|||||++.+.+.... ..+|+.+... .+....
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~--------~~v~i~G~~G~GKT~L~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 77 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA--------PITLVLGLRRTGKSSIIKIGINELNL----PYIYLDLRKFEERNYISYKDF 77 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS--------SEEEEEESTTSSHHHHHHHHHHHHTC----CEEEEEGGGGTTCSCCCHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC--------CcEEEECCCCCCHHHHHHHHHHhcCC----CEEEEEchhhccccCCCHHHH
Confidence 34679999999999999 621 58999999999999999999875321 2578887642 234444
Q ss_pred HHHHHHhccC--------------------CCC---------CCCcHHHHHHHHHHHhCCCcEEEEEecCCCCCh---hh
Q 043647 251 TKSILESITF--------------------SPN---------SLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNY---SL 298 (1096)
Q Consensus 251 ~~~i~~~l~~--------------------~~~---------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~ 298 (1096)
+..+...+.. ... .......+...+.+..+ ++++|||||++..+. ..
T Consensus 78 ~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 78 LLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchh
Confidence 4444433210 000 12234555555554333 499999999965321 12
Q ss_pred HHHhhcccCCCCCCcEEEEEcCchhhhhh----------c-CC-cceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhH
Q 043647 299 WNTLKSPFRAGASGSKILVTTCSTDVALT----------V-GT-AEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGS 366 (1096)
Q Consensus 299 ~~~l~~~l~~~~~gs~iivTtR~~~v~~~----------~-~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~ 366 (1096)
|..+...+.....+.++|+|++....... . +. ...+.+.+|+.+|+.+++...+...+ ... ..
T Consensus 157 ~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~-~~--- 231 (357)
T 2fna_A 157 LLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEAD-IDF-KD--- 231 (357)
T ss_dssp CHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHT-CCC-CC---
T ss_pred HHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcC-CCC-Cc---
Confidence 22222222222246789999997653221 1 11 24789999999999999987542111 111 11
Q ss_pred HHHHHHHHhCCCchhHHHHHHHhccCCCHHHHHH-HHhhhccccccCCChHHHHH-HHHh--cCchhhHHHhhhhcc
Q 043647 367 IRKKVVQKCRGLPLAAETLGGLLRCKQSDDEWDE-ILNSKIWYLSEESNILPVLR-LSYH--HLPSHLKRCFAYCAI 439 (1096)
Q Consensus 367 ~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~-~~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~k~~f~~~a~ 439 (1096)
. .+|++.++|+|+++..++..+....+...|.. +.+... ..+...+. +.++ .+++..+..+..+|.
T Consensus 232 ~-~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 232 Y-EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK------KLILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp H-HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH------HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred H-HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH------HHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 1 78999999999999999887654333333322 111100 00111122 2221 688889999999887
No 101
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.35 E-value=3.5e-14 Score=158.49 Aligned_cols=245 Identities=14% Similarity=0.081 Sum_probs=169.9
Q ss_pred cccEEEEecCCCcCccCCCCC--CCccEEEEeccc--CccccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCC
Q 043647 817 CLRQLSIVKCPRLCGRLPNHL--PILEKLMIYECV--QLVVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFR 892 (1096)
Q Consensus 817 ~L~~L~l~~c~~l~~~~p~~l--~~L~~L~l~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~ 892 (1096)
.++.++++++..- ......+ ++++.|.+.++. .....+..+++|++|++++|.... ......+..++
T Consensus 48 ~~~~l~l~~~~~~-~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~--------~~~~~~~~~~~ 118 (336)
T 2ast_B 48 LWQTLDLTGKNLH-PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV--------STLHGILSQCS 118 (336)
T ss_dssp TSSEEECTTCBCC-HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECH--------HHHHHHHTTBC
T ss_pred hheeeccccccCC-HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCH--------HHHHHHHhhCC
Confidence 4778888875321 1111223 678889887753 222235568999999999985221 00112356788
Q ss_pred CccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCc--CCCCCCCCCCcCeEEEeCCCCCcc--cCC-CCCCC-CcC
Q 043647 893 ALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKS--LPEGLPNLNSLHNIYVWDCPSLVS--FPE-GGLPN-CSL 966 (1096)
Q Consensus 893 ~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~c~~l~~--l~~-~~~~~-~L~ 966 (1096)
+|++|++++|......+..+..+++|++|++++|..++. ++..+..+++|++|++++|+.++. ++. ....+ +|+
T Consensus 119 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 999999999975446677888899999999999976763 566677899999999999867764 222 11225 999
Q ss_pred eEEEccCc-CCcC--CCCCCCCCCCCcccCCCCCCcceEEEcCCCCcc-ccccccccCcCCCCccEEEeccCCCCcccCc
Q 043647 967 SVTIGKCE-KLKA--LPNLNAYESPIDWGLHKLTSLKILCVIGCPDAV-SFPEEEIGMTFPSSLTELVIVRFPKLKYLSS 1042 (1096)
Q Consensus 967 ~L~l~~c~-~l~~--l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~-~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~ 1042 (1096)
+|++++|. .++. ++ ..+.++++|++|++++|..++ ..+.. +..+++|+.|++++|..+..-..
T Consensus 199 ~L~l~~~~~~~~~~~l~----------~~~~~~~~L~~L~l~~~~~l~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~ 265 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLS----------TLVRRCPNLVHLDLSDSVMLKNDCFQE---FFQLNYLQHLSLSRCYDIIPETL 265 (336)
T ss_dssp EEECCSCGGGSCHHHHH----------HHHHHCTTCSEEECTTCTTCCGGGGGG---GGGCTTCCEEECTTCTTCCGGGG
T ss_pred EEEeCCCcccCCHHHHH----------HHHhhCCCCCEEeCCCCCcCCHHHHHH---HhCCCCCCEeeCCCCCCCCHHHH
Confidence 99999986 4542 22 245678999999999996454 33433 35679999999999975543322
Q ss_pred CCCCCCCCcCeEeeccCCCCCCCCCCCc---cccccceeeccCcchhhhh
Q 043647 1043 NGFRNLAFLEYLQIRDCPKLTSFPEAGL---PSSLLELYINDYPLMTKQC 1089 (1096)
Q Consensus 1043 ~~l~~l~~L~~L~l~~c~~l~~l~~~~l---~~~L~~L~i~~c~~L~~~~ 1089 (1096)
..+.++++|+.|++++| ++..++ ..+|+.|+++ |..++...
T Consensus 266 ~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~-~n~l~~~~ 309 (336)
T 2ast_B 266 LELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQIN-CSHFTTIA 309 (336)
T ss_dssp GGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEES-CCCSCCTT
T ss_pred HHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEe-cccCcccc
Confidence 24678999999999998 555443 3468899986 44454433
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.35 E-value=2.2e-12 Score=139.77 Aligned_cols=175 Identities=16% Similarity=0.194 Sum_probs=138.8
Q ss_pred CCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCCC
Q 043647 855 FSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLPE 934 (1096)
Q Consensus 855 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~ 934 (1096)
+..+++|+.|++++|.... ...+..+++|++|++++|. ++.++. +..+++|++|++++| .++.+|.
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-----------~~~~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~ 107 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-----------VQGIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDEN-KVKDLSS 107 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-----------CTTGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCGGG
T ss_pred hhhcCcccEEEccCCCccc-----------ChhHhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCC-cCCCChh
Confidence 4458899999999986432 2346778999999999986 566665 889999999999996 5676664
Q ss_pred CCCCCCCcCeEEEeCCCCCcccCCCCCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccc
Q 043647 935 GLPNLNSLHNIYVWDCPSLVSFPEGGLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFP 1014 (1096)
Q Consensus 935 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~ 1014 (1096)
+..+++|+.|++++| .++.++.....++|+.|++++| .++.++ .+..+++|++|++++| .+..++
T Consensus 108 -l~~l~~L~~L~L~~n-~i~~~~~l~~l~~L~~L~l~~n-~l~~~~-----------~l~~l~~L~~L~L~~N-~l~~~~ 172 (291)
T 1h6t_A 108 -LKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNN-KITDIT-----------VLSRLTKLDTLSLEDN-QISDIV 172 (291)
T ss_dssp -GTTCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSS-CCCCCG-----------GGGGCTTCSEEECCSS-CCCCCG
T ss_pred -hccCCCCCEEECCCC-cCCCChhhcCCCCCCEEEccCC-cCCcch-----------hhccCCCCCEEEccCC-ccccch
Confidence 889999999999995 5666665445588999999986 445443 6788999999999999 787777
Q ss_pred cccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCC
Q 043647 1015 EEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFP 1066 (1096)
Q Consensus 1015 ~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~ 1066 (1096)
. +..+++|+.|++++ +.++.++ .+..+++|+.|++++| .+...|
T Consensus 173 ~----l~~l~~L~~L~L~~-N~i~~l~--~l~~l~~L~~L~l~~n-~i~~~~ 216 (291)
T 1h6t_A 173 P----LAGLTKLQNLYLSK-NHISDLR--ALAGLKNLDVLELFSQ-ECLNKP 216 (291)
T ss_dssp G----GTTCTTCCEEECCS-SCCCBCG--GGTTCTTCSEEEEEEE-EEECCC
T ss_pred h----hcCCCccCEEECCC-CcCCCCh--hhccCCCCCEEECcCC-cccCCc
Confidence 5 36789999999999 5688886 4888999999999994 455544
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.33 E-value=2e-12 Score=131.25 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=101.7
Q ss_pred CCCCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceEE
Q 043647 553 PKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLV 632 (1096)
Q Consensus 553 ~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 632 (1096)
..+++|+.|++++|.+..+| .+..+++|++|++++|.+..++ .+..+++|++|++++|..-...|..+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 34667888888888888887 6888888888888888776664 677888888888888643334677788888888888
Q ss_pred eccccccccCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCC
Q 043647 633 VTYVDLIREMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLK 712 (1096)
Q Consensus 633 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 712 (1096)
+++|......|..++.+ ++|+
T Consensus 119 Ls~n~i~~~~~~~l~~l-----------------------------------------------------------~~L~ 139 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTL-----------------------------------------------------------PKVN 139 (197)
T ss_dssp CCSSBCBGGGHHHHTTC-----------------------------------------------------------SSCC
T ss_pred ecCCccCcHhHHHHhhC-----------------------------------------------------------CCCC
Confidence 88876322233334433 3444
Q ss_pred eEEEeeeC-CCCCCcccCCccccceeEEeecCCCCCCCCCCCCCcCCcceeecccc
Q 043647 713 ELTVKCYG-GTVFPSWMGDPLFSNIVLLRLEDCEKCTSLPSLGLLGSLKNLTIKGM 767 (1096)
Q Consensus 713 ~L~l~~~~-~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~ 767 (1096)
.|++++|. ...+| .+. .+++|+.|++++|. +..++.+..+++|+.|+++++
T Consensus 140 ~L~L~~n~~i~~~~-~l~--~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 140 SIDLSYNGAITDIM-PLK--TLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSCTBCCCCG-GGG--GCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC
T ss_pred EEEccCCCCccccH-hhc--CCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCc
Confidence 45555554 44444 222 26677777777764 344556677777777777764
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.32 E-value=3.6e-12 Score=151.66 Aligned_cols=169 Identities=18% Similarity=0.243 Sum_probs=126.8
Q ss_pred CCCCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceEE
Q 043647 553 PKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLV 632 (1096)
Q Consensus 553 ~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 632 (1096)
..+++|+.|++++|.+..+| .+..+++|++|+|++|.+..+|+ +..+++|++|+|++| .+..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEE
Confidence 45677888888888888876 58888899999999988888876 888889999999886 677766 588888999999
Q ss_pred eccccccccCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCC
Q 043647 633 VTYVDLIREMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLK 712 (1096)
Q Consensus 633 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 712 (1096)
+++|. +..+| .+..+++|+.|..... .+.. +..+..+++|+
T Consensus 116 Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N------~l~~-------------------------------l~~l~~l~~L~ 156 (605)
T 1m9s_A 116 LEHNG-ISDIN-GLVHLPQLESLYLGNN------KITD-------------------------------ITVLSRLTKLD 156 (605)
T ss_dssp CTTSC-CCCCG-GGGGCTTCSEEECCSS------CCCC-------------------------------CGGGGSCTTCS
T ss_pred ecCCC-CCCCc-cccCCCccCEEECCCC------ccCC-------------------------------chhhcccCCCC
Confidence 98887 55553 4667777776642111 1110 02345567888
Q ss_pred eEEEeeeCCCCCCcccCCccccceeEEeecCCCCCCCCCCCCCcCCcceeeccccc
Q 043647 713 ELTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCTSLPSLGLLGSLKNLTIKGMR 768 (1096)
Q Consensus 713 ~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 768 (1096)
.|++++|....++. +.. +++|+.|+|++|. +..+|.+..+++|+.|+|+++.
T Consensus 157 ~L~Ls~N~l~~~~~-l~~--l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 157 TLSLEDNQISDIVP-LAG--LTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp EEECCSSCCCCCGG-GTT--CTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCSEE
T ss_pred EEECcCCcCCCchh-hcc--CCCCCEEECcCCC-CCCChHHccCCCCCEEEccCCc
Confidence 89998888877766 433 7899999999884 4567788889999999998763
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.27 E-value=4.3e-11 Score=140.62 Aligned_cols=175 Identities=21% Similarity=0.206 Sum_probs=104.1
Q ss_pred CccEEEEecccCccccCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCc
Q 043647 839 ILEKLMIYECVQLVVSFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSL 918 (1096)
Q Consensus 839 ~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L 918 (1096)
+|+.|++.++.-...+-.-+++|+.|++++|.... ++ ..+++|+.|++++|. ++.+|. +.. +|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~---------ip----~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALIS---------LP----ELPASLEYLDACDNR-LSTLPE-LPA--SL 122 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSC---------CC----CCCTTCCEEECCSSC-CSCCCC-CCT--TC
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcc---------cc----cccCCCCEEEccCCC-CCCcch-hhc--CC
Confidence 56777776654211111124667777777774321 11 235677777777764 455665 433 77
Q ss_pred CeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCCCCcccCCCCCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCC
Q 043647 919 GCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCPSLVSFPEGGLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTS 998 (1096)
Q Consensus 919 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~ 998 (1096)
++|++++| .++.+|. .+++|+.|++++ +.++.+|. .+++|+.|++++| .++.+| .+. ++
T Consensus 123 ~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~-N~l~~lp~--~l~~L~~L~Ls~N-~L~~lp-----------~l~--~~ 181 (571)
T 3cvr_A 123 KHLDVDNN-QLTMLPE---LPALLEYINADN-NQLTMLPE--LPTSLEVLSVRNN-QLTFLP-----------ELP--ES 181 (571)
T ss_dssp CEEECCSS-CCSCCCC---CCTTCCEEECCS-SCCSCCCC--CCTTCCEEECCSS-CCSCCC-----------CCC--TT
T ss_pred CEEECCCC-cCCCCCC---cCccccEEeCCC-CccCcCCC--cCCCcCEEECCCC-CCCCcc-----------hhh--CC
Confidence 77777774 4555665 567777777776 34556665 4567777777765 344444 122 67
Q ss_pred cceEEEcCCCCccccccccccCcCCCCc-------cEEEeccCCCCcccCcCCCCCCCCcCeEeeccCC
Q 043647 999 LKILCVIGCPDAVSFPEEEIGMTFPSSL-------TELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCP 1060 (1096)
Q Consensus 999 L~~L~l~~c~~l~~l~~~~~~~~~~~sL-------~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~ 1060 (1096)
|+.|++++| .+..+|. + ..+| +.|++++ |.|+.|| ..+..+++|+.|+|++|+
T Consensus 182 L~~L~Ls~N-~L~~lp~-~-----~~~L~~~~~~L~~L~Ls~-N~l~~lp-~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 182 LEALDVSTN-LLESLPA-V-----PVRNHHSEETEIFFRCRE-NRITHIP-ENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CCEEECCSS-CCSSCCC-C-----C--------CCEEEECCS-SCCCCCC-GGGGGSCTTEEEECCSSS
T ss_pred CCEEECcCC-CCCchhh-H-----HHhhhcccccceEEecCC-CcceecC-HHHhcCCCCCEEEeeCCc
Confidence 777777777 6666665 2 1145 7777777 4577776 345557777777777743
No 106
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.26 E-value=1.3e-10 Score=132.00 Aligned_cols=249 Identities=12% Similarity=-0.007 Sum_probs=160.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-----c--cCcEEEEEecCcc-ChHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-----M--FNLRSWVCVSDDF-DILR 249 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~--f~~~~wv~~~~~~-~~~~ 249 (1096)
..++||+++++++.+++..... ....+.+.|+|++|+||||+|+.+++..... . ....+|+++.... +...
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~-~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK-NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT-TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc-CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 6799999999999987754211 1235689999999999999999999864221 1 3356788877766 8888
Q ss_pred HHHHHHHhccCCCC--CCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHh-hcccCCCCCCcEEEEEcCchhhhh
Q 043647 250 ITKSILESITFSPN--SLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTL-KSPFRAGASGSKILVTTCSTDVAL 326 (1096)
Q Consensus 250 ~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l-~~~l~~~~~gs~iivTtR~~~v~~ 326 (1096)
++..++.++..... ...+...+...+.+.++.++.+|||||++......+... ...+.....+..||+||+......
T Consensus 99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 99 VLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTT
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHh
Confidence 88998888743321 123345666777778877777999999965321111112 222222116778999998753211
Q ss_pred hc------CCcceeeCCCCChHhHHHHHHHhhcC-CCCCCCCcchhHHHHHHHHHhC---CCch-hHHHHHHHh--cc--
Q 043647 327 TV------GTAEYYNLKLLSDDDCWSVFVKHAFE-KRDVGLHRHMGSIRKKVVQKCR---GLPL-AAETLGGLL--RC-- 391 (1096)
Q Consensus 327 ~~------~~~~~~~l~~L~~~~~~~lf~~~a~~-~~~~~~~~~~~~~~~~i~~~~~---g~PL-ai~~~~~~l--~~-- 391 (1096)
.+ .....+.+++++.++..+++...+.. ..... -..+..+.|++.++ |.|. |+.++-... ..
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~ 255 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGT---YDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGG 255 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTS---CCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSS
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCC---cCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 11 11237999999999999999987531 11111 12345667888887 8886 433333222 21
Q ss_pred -CCCHHHHHHHHhhhccccccCCChHHHHHHHHhcCchhhHHHhhhhcc
Q 043647 392 -KQSDDEWDEILNSKIWYLSEESNILPVLRLSYHHLPSHLKRCFAYCAI 439 (1096)
Q Consensus 392 -~~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~ 439 (1096)
.-+.+.+..++.... ...+..++..|+++.+..+..++.
T Consensus 256 ~~i~~~~v~~~~~~~~---------~~~~~~~~~~l~~~~~~~l~al~~ 295 (384)
T 2qby_B 256 GIIRKEHVDKAIVDYE---------QERLIEAVKALPFHYKLALRSLIE 295 (384)
T ss_dssp SCCCHHHHHHHHHHHH---------HHHHHHHHHSSCHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHh---------cchHHHHHHcCCHHHHHHHHHHHH
Confidence 225667777665421 245677889999988888777765
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.25 E-value=9.8e-12 Score=147.93 Aligned_cols=175 Identities=16% Similarity=0.193 Sum_probs=140.4
Q ss_pred CCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCCC
Q 043647 855 FSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLPE 934 (1096)
Q Consensus 855 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~ 934 (1096)
+..+++|+.|++++|.... ...+..+++|+.|+|++|. +..++. +..+++|+.|++++| .+..+|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-----------l~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~- 103 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-----------VQGIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDEN-KIKDLS- 103 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-----------CTTGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCT-
T ss_pred hhcCCCCCEEECcCCCCCC-----------ChHHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCC-CCCCCh-
Confidence 4458899999999986432 2346788999999999986 566655 889999999999996 567766
Q ss_pred CCCCCCCcCeEEEeCCCCCcccCCCCCCCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccc
Q 043647 935 GLPNLNSLHNIYVWDCPSLVSFPEGGLPNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFP 1014 (1096)
Q Consensus 935 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~ 1014 (1096)
.+..+++|+.|+|++| .+..++.....++|+.|++++| .++.++ .+..+++|+.|+|++| .+..++
T Consensus 104 ~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N-~l~~l~-----------~l~~l~~L~~L~Ls~N-~l~~~~ 169 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNN-KITDIT-----------VLSRLTKLDTLSLEDN-QISDIV 169 (605)
T ss_dssp TSTTCTTCCEEECTTS-CCCCCGGGGGCTTCSEEECCSS-CCCCCG-----------GGGSCTTCSEEECCSS-CCCCCG
T ss_pred hhccCCCCCEEEecCC-CCCCCccccCCCccCEEECCCC-ccCCch-----------hhcccCCCCEEECcCC-cCCCch
Confidence 6889999999999995 4666665555689999999987 445443 6888999999999999 777776
Q ss_pred cccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCC
Q 043647 1015 EEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFP 1066 (1096)
Q Consensus 1015 ~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~ 1066 (1096)
. +..+++|+.|+|++| .++.++ .+..+++|+.|+|++| .+...|
T Consensus 170 ~----l~~l~~L~~L~Ls~N-~i~~l~--~l~~l~~L~~L~L~~N-~l~~~p 213 (605)
T 1m9s_A 170 P----LAGLTKLQNLYLSKN-HISDLR--ALAGLKNLDVLELFSQ-ECLNKP 213 (605)
T ss_dssp G----GTTCTTCCEEECCSS-CCCBCG--GGTTCTTCSEEECCSE-EEECCC
T ss_pred h----hccCCCCCEEECcCC-CCCCCh--HHccCCCCCEEEccCC-cCcCCc
Confidence 5 378899999999995 688886 5888999999999995 445444
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.24 E-value=2.1e-11 Score=123.74 Aligned_cols=150 Identities=12% Similarity=0.116 Sum_probs=89.0
Q ss_pred CCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCCCCcc-cCCCCCCCCcCe
Q 043647 889 KYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCPSLVS-FPEGGLPNCSLS 967 (1096)
Q Consensus 889 ~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~-l~~~~~~~~L~~ 967 (1096)
..+++|+.|++++|. ++.++ .+..+++|++|++++| .++.++ .+..+++|++|++++|. ++. .+.
T Consensus 41 ~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~--------- 106 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKD-VTSDKIP--------- 106 (197)
T ss_dssp HHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTT-CBGGGSC---------
T ss_pred hhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCc-cCcccCh---------
Confidence 456678888888875 55666 5777888888888886 555554 56777888888888743 332 221
Q ss_pred EEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccc-cccccccCcCCCCccEEEeccCCCCcccCcCCCC
Q 043647 968 VTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVS-FPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFR 1046 (1096)
Q Consensus 968 L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~-l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~ 1046 (1096)
.+..+++|++|++++| .+.. .|.. +..+++|+.|++++|..++.++ .+.
T Consensus 107 ------------------------~l~~l~~L~~L~Ls~n-~i~~~~~~~---l~~l~~L~~L~L~~n~~i~~~~--~l~ 156 (197)
T 4ezg_A 107 ------------------------NLSGLTSLTLLDISHS-AHDDSILTK---INTLPKVNSIDLSYNGAITDIM--PLK 156 (197)
T ss_dssp ------------------------CCTTCTTCCEEECCSS-BCBGGGHHH---HTTCSSCCEEECCSCTBCCCCG--GGG
T ss_pred ------------------------hhcCCCCCCEEEecCC-ccCcHhHHH---HhhCCCCCEEEccCCCCccccH--hhc
Confidence 3445566666666666 3332 2322 2445566666666644455554 355
Q ss_pred CCCCcCeEeeccCCCCCCCCCCCccccccceeeccCc
Q 043647 1047 NLAFLEYLQIRDCPKLTSFPEAGLPSSLLELYINDYP 1083 (1096)
Q Consensus 1047 ~l~~L~~L~l~~c~~l~~l~~~~l~~~L~~L~i~~c~ 1083 (1096)
.+++|+.|++++ +.++.++...-.++|+.|++++++
T Consensus 157 ~l~~L~~L~l~~-n~i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 157 TLPELKSLNIQF-DGVHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp GCSSCCEEECTT-BCCCCCTTGGGCSSCCEEEECBC-
T ss_pred CCCCCCEEECCC-CCCcChHHhccCCCCCEEEeeCcc
Confidence 566666666666 345555432234556666666554
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.24 E-value=5.5e-11 Score=139.66 Aligned_cols=87 Identities=22% Similarity=0.395 Sum_probs=71.8
Q ss_pred CcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceEEecc
Q 043647 556 TKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLVVTY 635 (1096)
Q Consensus 556 ~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~ 635 (1096)
.+|++|++++|.++.+|..+. ++|++|+|++|.|+.+| ..+.+|++|++++| .+..+|. +.+ +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence 379999999999999988774 78999999999999998 56899999999996 6777888 665 999999999
Q ss_pred ccccccCcccCCCCCCCCcC
Q 043647 636 VDLIREMPLGIKELKCLQML 655 (1096)
Q Consensus 636 ~~~~~~~p~~i~~L~~L~~L 655 (1096)
|. +..+|. .+++|+.|
T Consensus 130 N~-l~~lp~---~l~~L~~L 145 (571)
T 3cvr_A 130 NQ-LTMLPE---LPALLEYI 145 (571)
T ss_dssp SC-CSCCCC---CCTTCCEE
T ss_pred Cc-CCCCCC---cCccccEE
Confidence 87 666776 45555555
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.22 E-value=7e-12 Score=133.49 Aligned_cols=146 Identities=20% Similarity=0.250 Sum_probs=86.6
Q ss_pred cCCCCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceE
Q 043647 552 LPKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHL 631 (1096)
Q Consensus 552 ~~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L 631 (1096)
+..+++|++|++++|.++.+| .++.+++|++|++++|.++.+|. +.++++|++|++++| .+..+|.... ++|++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCcccc--CcccEE
Confidence 344556666666666666555 45556666666666666665555 566666666666664 4555554222 566666
Q ss_pred EeccccccccCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCC
Q 043647 632 VVTYVDLIREMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSL 711 (1096)
Q Consensus 632 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L 711 (1096)
++++|. +..++ . +..+++|
T Consensus 112 ~L~~N~-l~~~~-~-----------------------------------------------------------l~~l~~L 130 (263)
T 1xeu_A 112 FLDNNE-LRDTD-S-----------------------------------------------------------LIHLKNL 130 (263)
T ss_dssp ECCSSC-CSBSG-G-----------------------------------------------------------GTTCTTC
T ss_pred EccCCc-cCCCh-h-----------------------------------------------------------hcCcccc
Confidence 666554 33322 1 2234556
Q ss_pred CeEEEeeeCCCCCCcccCCccccceeEEeecCCCCCCCCCCCCCcCCcceeecccc
Q 043647 712 KELTVKCYGGTVFPSWMGDPLFSNIVLLRLEDCEKCTSLPSLGLLGSLKNLTIKGM 767 (1096)
Q Consensus 712 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~ 767 (1096)
+.|++++|....+| .+. .+++|+.|++++|.. ..++.+..+++|+.|+++++
T Consensus 131 ~~L~Ls~N~i~~~~-~l~--~l~~L~~L~L~~N~i-~~~~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 131 EILSIRNNKLKSIV-MLG--FLSKLEVLDLHGNEI-TNTGGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CEEECTTSCCCBCG-GGG--GCTTCCEEECTTSCC-CBCTTSTTCCCCCEEEEEEE
T ss_pred cEEECCCCcCCCCh-HHc--cCCCCCEEECCCCcC-cchHHhccCCCCCEEeCCCC
Confidence 66666666666554 232 267888888888753 34467788888888888875
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.20 E-value=1.2e-10 Score=120.18 Aligned_cols=82 Identities=22% Similarity=0.399 Sum_probs=50.2
Q ss_pred eEEEecccccccCCCCcCCCCccceeeccccccccccc-ccccCCCCcEEeccCcccCccc-CccccCCCCCceEEeccc
Q 043647 559 RVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPE-SICSLCNLQFLILRGCYRLKKL-PSNLRNLINLRHLVVTYV 636 (1096)
Q Consensus 559 r~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~ 636 (1096)
+.++++++.++.+|..+. .+|++|++++|.|+.+|. .+..+.+|++|+|++| .+..+ |..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC
Confidence 356666666666666554 466666666666666654 5666666666666664 34444 555666666666666666
Q ss_pred cccccCcc
Q 043647 637 DLIREMPL 644 (1096)
Q Consensus 637 ~~~~~~p~ 644 (1096)
. +..+|.
T Consensus 91 ~-l~~l~~ 97 (220)
T 2v9t_B 91 K-ITELPK 97 (220)
T ss_dssp C-CCCCCT
T ss_pred c-CCccCH
Confidence 5 444443
No 112
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.20 E-value=4.7e-10 Score=127.61 Aligned_cols=248 Identities=13% Similarity=0.028 Sum_probs=155.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc----c-cCcEEEEEecCccChHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE----M-FNLRSWVCVSDDFDILRITK 252 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~-f~~~~wv~~~~~~~~~~~~~ 252 (1096)
..++||+++++++..++...- .....+.+.|+|++|+||||+|+.+++..... . -...+|+++....+...++.
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~-~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL-RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT-SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH-cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 679999999999999884321 11235688999999999999999999754221 0 12456788878888889999
Q ss_pred HHHHhccCCCCC-CCcHHHHHHHHHHHh--CCCcEEEEEecCCCCChh--hHHHh---hcccCCC--CCCcEEEEEcCch
Q 043647 253 SILESITFSPNS-LKDLNQIQVQLREAV--AGKRFLIVLDDVWSKNYS--LWNTL---KSPFRAG--ASGSKILVTTCST 322 (1096)
Q Consensus 253 ~i~~~l~~~~~~-~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~--~~~~l---~~~l~~~--~~gs~iivTtR~~ 322 (1096)
.++.+++..... ..+..++...+.+.+ .+++.+||||+++..... ..+.+ ....... ..+..+|.||+..
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 999988654322 233555566666666 456899999999653211 11222 2222111 3456788888765
Q ss_pred hhhhhc-----CC--cceeeCCCCChHhHHHHHHHhhcCC-CCCCCCcchhHHHHHHHHHhC---CCch-hHHHHHHHh-
Q 043647 323 DVALTV-----GT--AEYYNLKLLSDDDCWSVFVKHAFEK-RDVGLHRHMGSIRKKVVQKCR---GLPL-AAETLGGLL- 389 (1096)
Q Consensus 323 ~v~~~~-----~~--~~~~~l~~L~~~~~~~lf~~~a~~~-~~~~~~~~~~~~~~~i~~~~~---g~PL-ai~~~~~~l- 389 (1096)
.....+ .. ...+.+++++.++..+++...+... .... -..++.+.|++.++ |.|- |+.++....
T Consensus 178 ~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 178 GFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGV---LDPDVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp TTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTT---BCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCC---CCHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 321111 11 1478999999999999998875210 1111 12345667888887 9993 333332222
Q ss_pred -c---c--CCCHHHHHHHHhhhccccccCCChHHHHHHHHhcCchhhHHHhhhhc
Q 043647 390 -R---C--KQSDDEWDEILNSKIWYLSEESNILPVLRLSYHHLPSHLKRCFAYCA 438 (1096)
Q Consensus 390 -~---~--~~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a 438 (1096)
. . .-+.+.+..++.... ...+.-++..|+.+.+..+..++
T Consensus 255 ~a~~~~~~~i~~~~v~~a~~~~~---------~~~~~~~~~~l~~~~~~~l~a~~ 300 (387)
T 2v1u_A 255 IAERRREERVRREHVYSARAEIE---------RDRVSEVVRTLPLHAKLVLLSIM 300 (387)
T ss_dssp HHHHTTCSCBCHHHHHHHHHHHH---------HHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHHh---------hchHHHHHHcCCHHHHHHHHHHH
Confidence 1 1 114566666655421 23456678899999888777666
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.19 E-value=4.4e-11 Score=127.30 Aligned_cols=144 Identities=17% Similarity=0.216 Sum_probs=77.4
Q ss_pred CCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCCCCcccCCCCCCCCcCeEE
Q 043647 890 YFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCPSLVSFPEGGLPNCSLSVT 969 (1096)
Q Consensus 890 ~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~ 969 (1096)
.+++|+.|++++|. ++.++ .+..+++|++|++++| .++.+|. +..+++|+.|++++| .++.++.... ++|+.|+
T Consensus 39 ~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~-~~L~~L~ 112 (263)
T 1xeu_A 39 ELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS-ACLSRLF 112 (263)
T ss_dssp HHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC-SSCCEEE
T ss_pred hcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC-ccCCcCcccc-CcccEEE
Confidence 34445555555442 33443 3444555555555553 3444433 445555555555552 3444443222 5555555
Q ss_pred EccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCC
Q 043647 970 IGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLA 1049 (1096)
Q Consensus 970 l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~ 1049 (1096)
+++| .++.++ .+.++++|+.|++++| .+..++. +..+++|+.|++++ +.++.+ ..+..++
T Consensus 113 L~~N-~l~~~~-----------~l~~l~~L~~L~Ls~N-~i~~~~~----l~~l~~L~~L~L~~-N~i~~~--~~l~~l~ 172 (263)
T 1xeu_A 113 LDNN-ELRDTD-----------SLIHLKNLEILSIRNN-KLKSIVM----LGFLSKLEVLDLHG-NEITNT--GGLTRLK 172 (263)
T ss_dssp CCSS-CCSBSG-----------GGTTCTTCCEEECTTS-CCCBCGG----GGGCTTCCEEECTT-SCCCBC--TTSTTCC
T ss_pred ccCC-ccCCCh-----------hhcCcccccEEECCCC-cCCCChH----HccCCCCCEEECCC-CcCcch--HHhccCC
Confidence 5554 333332 4566677777777777 5666652 35566777777777 446665 3566677
Q ss_pred CcCeEeeccC
Q 043647 1050 FLEYLQIRDC 1059 (1096)
Q Consensus 1050 ~L~~L~l~~c 1059 (1096)
+|+.|+++++
T Consensus 173 ~L~~L~l~~N 182 (263)
T 1xeu_A 173 KVNWIDLTGQ 182 (263)
T ss_dssp CCCEEEEEEE
T ss_pred CCCEEeCCCC
Confidence 7777777763
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.19 E-value=1.5e-10 Score=119.41 Aligned_cols=131 Identities=15% Similarity=0.248 Sum_probs=83.7
Q ss_pred CCccEEEEccCCCcccch-hhcCCCCCcCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCCCCcccCCCCCCCCcCeEEE
Q 043647 892 RALQQLEILDCPKLESIA-ERFHNNTSLGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCPSLVSFPEGGLPNCSLSVTI 970 (1096)
Q Consensus 892 ~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l 970 (1096)
++|+.|++++|. ++.++ ..+..+++|+.|++++|..-...|..|.++++|++|++++ +.++.+|.
T Consensus 32 ~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~------------ 97 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-NKITELPK------------ 97 (220)
T ss_dssp TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-SCCCCCCT------------
T ss_pred cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-CcCCccCH------------
Confidence 356666666664 33443 2456666666666666432222355566666666666666 33443332
Q ss_pred ccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCC
Q 043647 971 GKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAF 1050 (1096)
Q Consensus 971 ~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~ 1050 (1096)
..+.++++|+.|++++| .+..++.. .|..+++|+.|++++ +.++.++...+..+++
T Consensus 98 --------------------~~f~~l~~L~~L~L~~N-~l~~~~~~--~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~ 153 (220)
T 2v9t_B 98 --------------------SLFEGLFSLQLLLLNAN-KINCLRVD--AFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRA 153 (220)
T ss_dssp --------------------TTTTTCTTCCEEECCSS-CCCCCCTT--TTTTCTTCCEEECCS-SCCSCCCTTTTTTCTT
T ss_pred --------------------hHccCCCCCCEEECCCC-CCCEeCHH--HcCCCCCCCEEECCC-CcCCEECHHHHhCCCC
Confidence 14567788888888888 67766543 246678888888888 5688887666778888
Q ss_pred cCeEeeccCC
Q 043647 1051 LEYLQIRDCP 1060 (1096)
Q Consensus 1051 L~~L~l~~c~ 1060 (1096)
|+.|++++++
T Consensus 154 L~~L~L~~N~ 163 (220)
T 2v9t_B 154 IQTMHLAQNP 163 (220)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEeCCCC
Confidence 8888888744
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.18 E-value=1.6e-10 Score=120.22 Aligned_cols=75 Identities=24% Similarity=0.286 Sum_probs=44.3
Q ss_pred EEEecccccccCCCCcCCCCccceeeccccccccc-ccccccCCCCcEEeccCcccCcccCcc-ccCCCCCceEEecccc
Q 043647 560 VLSLKKYYITELPHSIGDLKHLRYINLSETMIRCL-PESICSLCNLQFLILRGCYRLKKLPSN-LRNLINLRHLVVTYVD 637 (1096)
Q Consensus 560 ~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 637 (1096)
.++++++.+..+|..+. .+|++|+|++|.|..+ |..+.++.+|++|+|++| .+..+|.. +..+++|++|++++|.
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCc
Confidence 45566666666665443 5666666666666655 445566666666666664 45555543 3566666666666655
No 116
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.18 E-value=4.9e-10 Score=118.49 Aligned_cols=197 Identities=16% Similarity=0.147 Sum_probs=120.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.+++||+..++.+..++.... ..+.+.|+|++|+||||+|+.+++..... .+... .+. .... ...+..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~---~~~---~~~~-~~~~~~ 91 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT---PCG---VCDN-CREIEQ 91 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS---CCS---CSHH-HHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---CCc---ccHH-HHHHhc
Confidence 468999999999999986532 23588999999999999999998754321 11000 000 0000 001110
Q ss_pred hcc-----CCCCCCCcHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchhhh-h
Q 043647 257 SIT-----FSPNSLKDLNQIQVQLREA----VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTDVA-L 326 (1096)
Q Consensus 257 ~l~-----~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~-~ 326 (1096)
... .........+.+...+... ..+++.+||+||++..+...++.+...+.....+..+|+||+..... .
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~ 171 (250)
T 1njg_A 92 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 171 (250)
T ss_dssp TCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred cCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCH
Confidence 000 0000001111111111111 13568999999998766667777777666555678888888765422 1
Q ss_pred h-cCCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHHHHh
Q 043647 327 T-VGTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGGLL 389 (1096)
Q Consensus 327 ~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 389 (1096)
. ......+.+++++.++..+++...+...+ . .-..+....|++.++|.|..+..+...+
T Consensus 172 ~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~-~---~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 172 TILSRCLQFHLKALDVEQIRHQLEHILNEEH-I---AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHTT-C---CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCCCHHHHHHHHHHHHHhcC-C---CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 12235799999999999999988774322 1 1223567789999999999888766443
No 117
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.17 E-value=1.1e-12 Score=149.34 Aligned_cols=84 Identities=19% Similarity=0.190 Sum_probs=38.9
Q ss_pred CCCCcceEEEeccccccc-----CCCCcCCCCccceeeccccccc----cccccc-------ccCCCCcEEeccCcccCc
Q 043647 553 PKFTKLRVLSLKKYYITE-----LPHSIGDLKHLRYINLSETMIR----CLPESI-------CSLCNLQFLILRGCYRLK 616 (1096)
Q Consensus 553 ~~~~~Lr~L~L~~~~~~~-----lp~~i~~l~~Lr~L~L~~~~i~----~lp~~i-------~~L~~L~~L~L~~~~~l~ 616 (1096)
..+++|++|+|++|.+.. ++..+..+++|++|+|++|.+. .+|..+ .++++|++|+|++|. +.
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~ 107 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FG 107 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CC
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-CC
Confidence 344455555555554432 2233444555555555554332 122222 345555555555542 22
Q ss_pred c-----cCccccCCCCCceEEecccc
Q 043647 617 K-----LPSNLRNLINLRHLVVTYVD 637 (1096)
Q Consensus 617 ~-----lp~~i~~l~~L~~L~l~~~~ 637 (1096)
. +|..+..+++|++|++++|.
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 2 44445555555555555554
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.17 E-value=2.5e-10 Score=118.75 Aligned_cols=130 Identities=20% Similarity=0.198 Sum_probs=82.0
Q ss_pred CCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCCC-CCCCCCCcCeEEEeCCCCCcccCCCCCCCCcCeEEE
Q 043647 892 RALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLPE-GLPNLNSLHNIYVWDCPSLVSFPEGGLPNCSLSVTI 970 (1096)
Q Consensus 892 ~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l 970 (1096)
++|++|+|++|......+..+..+++|++|++++| .+..+|. .+..+++|+.|++++| .++.++.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~------------ 105 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN-QLTVLPS------------ 105 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT------------
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC-cCCccCh------------
Confidence 45566666655433323444555556666666553 3444442 3455555555555552 3333332
Q ss_pred ccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCC
Q 043647 971 GKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAF 1050 (1096)
Q Consensus 971 ~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~ 1050 (1096)
..+..+++|++|++++| .+..+|... ..+++|+.|++++ +.++.++...+..+++
T Consensus 106 --------------------~~~~~l~~L~~L~Ls~N-~l~~lp~~~---~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~ 160 (229)
T 3e6j_A 106 --------------------AVFDRLVHLKELFMCCN-KLTELPRGI---ERLTHLTHLALDQ-NQLKSIPHGAFDRLSS 160 (229)
T ss_dssp --------------------TTTTTCTTCCEEECCSS-CCCSCCTTG---GGCTTCSEEECCS-SCCCCCCTTTTTTCTT
T ss_pred --------------------hHhCcchhhCeEeccCC-cccccCccc---ccCCCCCEEECCC-CcCCccCHHHHhCCCC
Confidence 24667788888888888 777887653 5678888888888 5688887667888888
Q ss_pred cCeEeeccCC
Q 043647 1051 LEYLQIRDCP 1060 (1096)
Q Consensus 1051 L~~L~l~~c~ 1060 (1096)
|+.|++++++
T Consensus 161 L~~L~l~~N~ 170 (229)
T 3e6j_A 161 LTHAYLFGNP 170 (229)
T ss_dssp CCEEECTTSC
T ss_pred CCEEEeeCCC
Confidence 8888888854
No 119
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.15 E-value=6.3e-10 Score=126.53 Aligned_cols=251 Identities=15% Similarity=0.065 Sum_probs=156.0
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccc--cCcEEEEEecCccChHHHHHHH
Q 043647 177 EPAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEM--FNLRSWVCVSDDFDILRITKSI 254 (1096)
Q Consensus 177 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i 254 (1096)
+..++||+++++++.+++..... ....+.+.|+|++|+||||||+.+++...... -...+|+.+....+...++..+
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~-~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR-EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG-TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc-CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 36799999999999998854210 12356899999999999999999997543211 2346788877777788888888
Q ss_pred HHhccCCCC-CCCcHHHHHHHHHHHhC--CCcEEEEEecCCCCC----hhhHHHhhcccCC-CCCCcEEEEEcCchhhhh
Q 043647 255 LESITFSPN-SLKDLNQIQVQLREAVA--GKRFLIVLDDVWSKN----YSLWNTLKSPFRA-GASGSKILVTTCSTDVAL 326 (1096)
Q Consensus 255 ~~~l~~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~iivTtR~~~v~~ 326 (1096)
+.+++.... ...+..+....+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+......
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 98 LESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp TTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 888865432 12234555555555553 458999999996421 2233344333321 223557788887664432
Q ss_pred hcCC-------cceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhC---CCchhHHH-HHHHh--c---
Q 043647 327 TVGT-------AEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCR---GLPLAAET-LGGLL--R--- 390 (1096)
Q Consensus 327 ~~~~-------~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~---g~PLai~~-~~~~l--~--- 390 (1096)
.+.. ...+.+++++.++..+++...+..... ...-..++.+.|++.++ |.|..+.. +.... .
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~ 255 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERM 255 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 2211 147999999999999999886521110 11223455667777777 99984433 32221 1
Q ss_pred c--CCCHHHHHHHHhhhccccccCCChHHHHHHHHhcCchhhHHHhhhhcc
Q 043647 391 C--KQSDDEWDEILNSKIWYLSEESNILPVLRLSYHHLPSHLKRCFAYCAI 439 (1096)
Q Consensus 391 ~--~~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~ 439 (1096)
. .-+.+.+..++.... ...+.-++..+|...+..+..++.
T Consensus 256 ~~~~i~~~~v~~a~~~~~---------~~~~~~~~~~l~~~~~~il~ai~~ 297 (386)
T 2qby_A 256 KDTKVKEEYVYMAKEEIE---------RDRVRDIILTLPFHSKLVLMAVVS 297 (386)
T ss_dssp TCSSCCHHHHHHHHHHHH---------HHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHh---------hchHHHHHHcCCHHHHHHHHHHHH
Confidence 1 114555555554321 234666778899888887776664
No 120
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.13 E-value=1.2e-11 Score=139.08 Aligned_cols=93 Identities=14% Similarity=0.231 Sum_probs=68.4
Q ss_pred hhhhcCCCCcceEEEecccccccCC-----CCcCCCC-ccceeeccccccccc-ccccccC-----CCCcEEeccCcccC
Q 043647 548 LSNLLPKFTKLRVLSLKKYYITELP-----HSIGDLK-HLRYINLSETMIRCL-PESICSL-----CNLQFLILRGCYRL 615 (1096)
Q Consensus 548 ~~~~~~~~~~Lr~L~L~~~~~~~lp-----~~i~~l~-~Lr~L~L~~~~i~~l-p~~i~~L-----~~L~~L~L~~~~~l 615 (1096)
++.++...++|++|++++|.++..+ ..+..++ +|++|+|++|.+... +..+..+ .+|++|+|++|. +
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l 92 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-L 92 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-G
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-C
Confidence 4455666677999999999988775 5677787 899999999988865 5566665 889999999874 5
Q ss_pred cccC-cc----ccCC-CCCceEEeccccccccC
Q 043647 616 KKLP-SN----LRNL-INLRHLVVTYVDLIREM 642 (1096)
Q Consensus 616 ~~lp-~~----i~~l-~~L~~L~l~~~~~~~~~ 642 (1096)
...+ .. +..+ ++|++|++++|. +...
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~ 124 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWND-FSSK 124 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGS
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCc-CCcH
Confidence 5443 32 4444 789999998887 4433
No 121
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.13 E-value=2.1e-12 Score=146.76 Aligned_cols=237 Identities=17% Similarity=0.178 Sum_probs=146.5
Q ss_pred ccccCcCceeecccchhhhhhhhccchhhhhhhhcCCCCcceEEEeccccccc----CCCCc-------CCCCccceeec
Q 043647 518 VFHEVEHLRTFLPVLSYEIRLLTRYITDVVLSNLLPKFTKLRVLSLKKYYITE----LPHSI-------GDLKHLRYINL 586 (1096)
Q Consensus 518 ~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~----lp~~i-------~~l~~Lr~L~L 586 (1096)
.+..+++|+.+.... ... .......+...+..+++|++|+|++|.+.. +|..+ ..+++|++|+|
T Consensus 27 ~l~~~~~L~~L~L~~-n~i----~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSG-NTI----GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HHHHCSCCCEEECTT-SEE----CHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHhcCCCccEEECCC-CCC----CHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 345567777776554 110 001112244567889999999999986553 34333 78899999999
Q ss_pred ccccccc-----cccccccCCCCcEEeccCcccCc-----ccCccccCC---------CCCceEEecccccc-ccCc---
Q 043647 587 SETMIRC-----LPESICSLCNLQFLILRGCYRLK-----KLPSNLRNL---------INLRHLVVTYVDLI-REMP--- 643 (1096)
Q Consensus 587 ~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~-----~lp~~i~~l---------~~L~~L~l~~~~~~-~~~p--- 643 (1096)
++|.+.. +|..+.++++|++|+|++|. +. .++..+..+ ++|++|++++|... ..+|
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 9999886 78899999999999999974 43 234444445 89999999998732 2334
Q ss_pred ccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCCeEEEeeeCC--
Q 043647 644 LGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKELTVKCYGG-- 721 (1096)
Q Consensus 644 ~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-- 721 (1096)
..+..+++|++|...... +. ...........+..+++|+.|++++|..
T Consensus 181 ~~l~~~~~L~~L~L~~n~------l~------------------------~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~ 230 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNG------IR------------------------PEGIEHLLLEGLAYCQELKVLDLQDNTFTH 230 (386)
T ss_dssp HHHHHCTTCCEEECCSSC------CC------------------------HHHHHHHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred HHHHhCCCcCEEECcCCC------CC------------------------HhHHHHHHHHHhhcCCCccEEECcCCCCCc
Confidence 345566677666421110 00 0001111122566677788888887765
Q ss_pred ---CCCCcccCCccccceeEEeecCCCCCCC----CC-CC--CCcCCcceeecccccceeE-----ecccccCCCCCCCC
Q 043647 722 ---TVFPSWMGDPLFSNIVLLRLEDCEKCTS----LP-SL--GLLGSLKNLTIKGMRRLKS-----IGFEIYGEGCSKPF 786 (1096)
Q Consensus 722 ---~~~p~~~~~~~~~~L~~L~L~~~~~~~~----l~-~l--~~l~~L~~L~L~~~~~l~~-----~~~~~~~~~~~~~~ 786 (1096)
..+|.++.. +++|+.|+|++|..... ++ .+ +.+++|+.|+|++|. +.. ++..+. ..+
T Consensus 231 ~g~~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~-----~~l 302 (386)
T 2ca6_A 231 LGSSALAIALKS--WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVID-----EKM 302 (386)
T ss_dssp HHHHHHHHHGGG--CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHH-----HHC
T ss_pred HHHHHHHHHHcc--CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHH-----hcC
Confidence 334555543 67888888888753322 22 23 447888888887753 332 221111 226
Q ss_pred CCCceecccCCC
Q 043647 787 QALETLCFEDLP 798 (1096)
Q Consensus 787 ~~L~~L~l~~~~ 798 (1096)
++|+.|++.+++
T Consensus 303 ~~L~~L~l~~N~ 314 (386)
T 2ca6_A 303 PDLLFLELNGNR 314 (386)
T ss_dssp TTCCEEECTTSB
T ss_pred CCceEEEccCCc
Confidence 788888887754
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.12 E-value=3.6e-10 Score=116.61 Aligned_cols=93 Identities=12% Similarity=0.209 Sum_probs=65.8
Q ss_pred eEEEecccccccCCCCcCCCCccceeeccccccccccc--ccccCCCCcEEeccCcccCcccCc-cccCCCCCceEEecc
Q 043647 559 RVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPE--SICSLCNLQFLILRGCYRLKKLPS-NLRNLINLRHLVVTY 635 (1096)
Q Consensus 559 r~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~ 635 (1096)
+.++++++.++.+|..+. ..+++|+|++|.++.++. .+.++++|++|+|++| .+..+|. .+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCC
Confidence 478888888888887664 356788888888887743 4788888888888885 5666665 578888888888888
Q ss_pred ccccccCccc-CCCCCCCCcC
Q 043647 636 VDLIREMPLG-IKELKCLQML 655 (1096)
Q Consensus 636 ~~~~~~~p~~-i~~L~~L~~L 655 (1096)
|. +..+|.. ++.+++|++|
T Consensus 91 N~-l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 91 NR-LENVQHKMFKGLESLKTL 110 (220)
T ss_dssp SC-CCCCCGGGGTTCSSCCEE
T ss_pred Cc-cCccCHhHhcCCcCCCEE
Confidence 87 4544432 4444444433
No 123
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.12 E-value=3.6e-10 Score=116.61 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=81.5
Q ss_pred CccEEEEccCCCcccc-h-hhcCCCCCcCeEEEecCCCcCcCC-CCCCCCCCcCeEEEeCCCCCcccCCCCCCCCcCeEE
Q 043647 893 ALQQLEILDCPKLESI-A-ERFHNNTSLGCIWIWKCENLKSLP-EGLPNLNSLHNIYVWDCPSLVSFPEGGLPNCSLSVT 969 (1096)
Q Consensus 893 ~L~~L~L~~~~~l~~l-~-~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~ 969 (1096)
.+++|++++|. ++.+ + ..+..+++|++|+++++ .++.++ ..+..+++|++|+++++ .++.++.
T Consensus 33 ~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~----------- 98 (220)
T 2v70_A 33 YTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN-RLENVQH----------- 98 (220)
T ss_dssp TCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCG-----------
T ss_pred CCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC-ccCccCH-----------
Confidence 45566666654 3333 2 22455666666666653 344433 24555666666666652 2333221
Q ss_pred EccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCC
Q 043647 970 IGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLA 1049 (1096)
Q Consensus 970 l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~ 1049 (1096)
..+.++++|++|++++| .+..++.. .+..+++|+.|++++ +.++.++...+..++
T Consensus 99 ---------------------~~~~~l~~L~~L~Ls~N-~l~~~~~~--~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~ 153 (220)
T 2v70_A 99 ---------------------KMFKGLESLKTLMLRSN-RITCVGND--SFIGLSSVRLLSLYD-NQITTVAPGAFDTLH 153 (220)
T ss_dssp ---------------------GGGTTCSSCCEEECTTS-CCCCBCTT--SSTTCTTCSEEECTT-SCCCCBCTTTTTTCT
T ss_pred ---------------------hHhcCCcCCCEEECCCC-cCCeECHh--HcCCCccCCEEECCC-CcCCEECHHHhcCCC
Confidence 24677888899999988 67766543 246778889999888 668888657888888
Q ss_pred CcCeEeeccCC
Q 043647 1050 FLEYLQIRDCP 1060 (1096)
Q Consensus 1050 ~L~~L~l~~c~ 1060 (1096)
+|+.|++++++
T Consensus 154 ~L~~L~L~~N~ 164 (220)
T 2v70_A 154 SLSTLNLLANP 164 (220)
T ss_dssp TCCEEECCSCC
T ss_pred CCCEEEecCcC
Confidence 89999888854
No 124
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.11 E-value=4.6e-12 Score=142.41 Aligned_cols=77 Identities=13% Similarity=0.023 Sum_probs=53.8
Q ss_pred EEEecccccccC-CCCcCCCCccceeecccccccccc-----cccccCC-CCcEEeccCcccCccc-CccccCC-----C
Q 043647 560 VLSLKKYYITEL-PHSIGDLKHLRYINLSETMIRCLP-----ESICSLC-NLQFLILRGCYRLKKL-PSNLRNL-----I 626 (1096)
Q Consensus 560 ~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp-----~~i~~L~-~L~~L~L~~~~~l~~l-p~~i~~l-----~ 626 (1096)
.+.++++.++.. |..+....+|++|+|++|.+...+ ..+.+++ +|++|+|++| .+... +..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCC
Confidence 356777777754 444455566888888888888765 5667777 8888888886 44443 4445554 8
Q ss_pred CCceEEecccc
Q 043647 627 NLRHLVVTYVD 637 (1096)
Q Consensus 627 ~L~~L~l~~~~ 637 (1096)
+|++|++++|.
T Consensus 81 ~L~~L~Ls~n~ 91 (362)
T 3goz_A 81 NVTSLNLSGNF 91 (362)
T ss_dssp TCCEEECCSSC
T ss_pred CccEEECcCCc
Confidence 88888888876
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.10 E-value=7.6e-11 Score=116.19 Aligned_cols=99 Identities=21% Similarity=0.295 Sum_probs=78.7
Q ss_pred CCCcceEEEecccccc--cCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcc-cCccccCCCCCce
Q 043647 554 KFTKLRVLSLKKYYIT--ELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKK-LPSNLRNLINLRH 630 (1096)
Q Consensus 554 ~~~~Lr~L~L~~~~~~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~-lp~~i~~l~~L~~ 630 (1096)
..++|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++| .+.. +|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCE
Confidence 4578999999999988 8888888999999999999998888 78888999999999996 4555 7776777999999
Q ss_pred EEeccccccccCc--ccCCCCCCCCcC
Q 043647 631 LVVTYVDLIREMP--LGIKELKCLQML 655 (1096)
Q Consensus 631 L~l~~~~~~~~~p--~~i~~L~~L~~L 655 (1096)
|++++|. +..+| ..++.+++|++|
T Consensus 100 L~Ls~N~-l~~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 100 LNLSGNK-LKDISTLEPLKKLECLKSL 125 (168)
T ss_dssp EECBSSS-CCSSGGGGGGSSCSCCCEE
T ss_pred EeccCCc-cCcchhHHHHhcCCCCCEE
Confidence 9999887 56554 345555544444
No 126
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.08 E-value=4.8e-10 Score=114.88 Aligned_cols=65 Identities=20% Similarity=0.063 Sum_probs=43.1
Q ss_pred cCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCCC
Q 043647 992 GLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFPE 1067 (1096)
Q Consensus 992 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~ 1067 (1096)
.+.++++|++|++++| .+..++... +..+++|+.|++++++- ...+++|+.|+++.+..-..+|.
T Consensus 119 ~~~~l~~L~~L~l~~N-~l~~~~~~~--~~~l~~L~~L~l~~N~~--------~~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 119 VFDKLTQLKDLRLYQN-QLKSVPDGV--FDRLTSLQYIWLHDNPW--------DCTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp TTTTCTTCCEEECCSS-CCSCCCTTT--TTTCTTCCEEECCSCCB--------CCCTTTTHHHHHHHHHCTTTBBC
T ss_pred HhccCCcCCEEECCCC-ccceeCHHH--hccCCCccEEEecCCCe--------ecCCCCHHHHHHHHHhCCceeec
Confidence 4667788888888888 677776642 35677888888888531 23456778888777544445553
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.08 E-value=1.5e-10 Score=114.00 Aligned_cols=110 Identities=26% Similarity=0.308 Sum_probs=93.7
Q ss_pred hhhhcCCCCcceEEEecccccccCCCCcCCCCccceeecccccccc-cccccccCCCCcEEeccCcccCcccC--ccccC
Q 043647 548 LSNLLPKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRC-LPESICSLCNLQFLILRGCYRLKKLP--SNLRN 624 (1096)
Q Consensus 548 ~~~~~~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~ 624 (1096)
++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+.++++|++|++++| .+..+| ..+..
T Consensus 41 i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~ 118 (168)
T 2ell_A 41 IEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKK 118 (168)
T ss_dssp CSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSS
T ss_pred HHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhc
Confidence 344567889999999999999888 788999999999999999997 7777888999999999996 688876 67899
Q ss_pred CCCCceEEeccccccccCcc----cCCCCCCCCcCCceEe
Q 043647 625 LINLRHLVVTYVDLIREMPL----GIKELKCLQMLSNFIV 660 (1096)
Q Consensus 625 l~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~ 660 (1096)
+++|++|++++|. +..+|. .+..+++|+.|+...+
T Consensus 119 l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 119 LECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence 9999999999998 677776 6888999998875544
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.07 E-value=1.1e-10 Score=112.44 Aligned_cols=105 Identities=26% Similarity=0.316 Sum_probs=84.1
Q ss_pred hhhcCCCCcceEEEecccccccCCCCcCCCCccceeecccccccc-cccccccCCCCcEEeccCcccCcccC--ccccCC
Q 043647 549 SNLLPKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRC-LPESICSLCNLQFLILRGCYRLKKLP--SNLRNL 625 (1096)
Q Consensus 549 ~~~~~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~l 625 (1096)
+..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+..+++|++|++++| .+..+| ..++.+
T Consensus 35 ~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l 112 (149)
T 2je0_A 35 EGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKL 112 (149)
T ss_dssp CSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGC
T ss_pred HHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhC
Confidence 44567788899999998888877 778888899999999988887 7777778889999999886 577655 678888
Q ss_pred CCCceEEeccccccccCcc----cCCCCCCCCcCC
Q 043647 626 INLRHLVVTYVDLIREMPL----GIKELKCLQMLS 656 (1096)
Q Consensus 626 ~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~ 656 (1096)
++|++|++++|. +..+|. .++.+++|+.|+
T Consensus 113 ~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 113 ENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp TTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEET
T ss_pred CCCCEEeCcCCc-ccchHHHHHHHHHHCCCccccc
Confidence 899999998887 666665 477777777765
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.05 E-value=4.5e-10 Score=125.94 Aligned_cols=54 Identities=13% Similarity=0.131 Sum_probs=24.8
Q ss_pred ccEEEEccCCCcccchh-hcC-CCCCcCeEEEecCCCcCcCC-CCCCCCCCcCeEEEeC
Q 043647 894 LQQLEILDCPKLESIAE-RFH-NNTSLGCIWIWKCENLKSLP-EGLPNLNSLHNIYVWD 949 (1096)
Q Consensus 894 L~~L~L~~~~~l~~l~~-~~~-~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~ 949 (1096)
++.|+|++|. ++.++. .+. .+++|+.|++++| .+..++ ..|.++++|++|+|++
T Consensus 41 l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 41 TALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp CSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCC-CCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCC
Confidence 4455555543 333322 233 4555555555553 333333 3355555555555555
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.05 E-value=5e-10 Score=125.50 Aligned_cols=85 Identities=15% Similarity=0.184 Sum_probs=50.3
Q ss_pred CcceEEeccCCCccccCCCCcccccCCCCC-CCCCccEEEEccCCCcccch-hhcCCCCCcCeEEEecCCCcCcCC-CCC
Q 043647 860 LLCKLEIDRCKGVACRSPADLMSINSDSFK-YFRALQQLEILDCPKLESIA-ERFHNNTSLGCIWIWKCENLKSLP-EGL 936 (1096)
Q Consensus 860 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp-~~l 936 (1096)
.++.|++++|... .+....+. .+++|+.|+|++|. ++.++ ..+..+++|++|++++| .++.+| ..+
T Consensus 40 ~l~~L~Ls~N~l~---------~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~ 108 (361)
T 2xot_A 40 YTALLDLSHNNLS---------RLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLF 108 (361)
T ss_dssp TCSEEECCSSCCC---------EECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTT
T ss_pred CCCEEECCCCCCC---------ccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCC-cCCcCCHHHh
Confidence 3556666666422 22333344 66777777777765 44443 45677777777777774 355554 346
Q ss_pred CCCCCcCeEEEeCCCCCccc
Q 043647 937 PNLNSLHNIYVWDCPSLVSF 956 (1096)
Q Consensus 937 ~~l~~L~~L~l~~c~~l~~l 956 (1096)
..+++|+.|+|++| .+..+
T Consensus 109 ~~l~~L~~L~L~~N-~i~~~ 127 (361)
T 2xot_A 109 SDLQALEVLLLYNN-HIVVV 127 (361)
T ss_dssp TTCTTCCEEECCSS-CCCEE
T ss_pred CCCcCCCEEECCCC-cccEE
Confidence 67777777777763 34444
No 131
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.04 E-value=3.7e-09 Score=109.83 Aligned_cols=179 Identities=14% Similarity=0.082 Sum_probs=116.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccC-cEEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFN-LRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.+++|+++.++++.+++.... .+.+.|+|++|+|||++|+.+++......+. ..+.+..+.......+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~-----~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 85 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN-----IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVV------ 85 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC-----CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHH------
T ss_pred HHHcCcHHHHHHHHHHHhCCC-----CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHH------
Confidence 468999999999999985432 2348999999999999999998754222222 2333443333222222
Q ss_pred hccCCCCCCCcHHHHHHHHHHHh------CCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchhhh-hh-c
Q 043647 257 SITFSPNSLKDLNQIQVQLREAV------AGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTDVA-LT-V 328 (1096)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~l~~~l------~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~-~~-~ 328 (1096)
...+.... .+++.+||+||++......++.+...+.....+.++|+||+..... .. .
T Consensus 86 ---------------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~ 150 (226)
T 2chg_A 86 ---------------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (226)
T ss_dssp ---------------HHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred ---------------HHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHH
Confidence 22222221 3678999999998766555666666655555677888888765321 11 1
Q ss_pred CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHH
Q 043647 329 GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLG 386 (1096)
Q Consensus 329 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 386 (1096)
.....+.+.+++.++..+++.+.+...+. .-..+....|++.++|.|..+..+.
T Consensus 151 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGV----KITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTC----CBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCceeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22347899999999999999887642211 1123566788999999998655443
No 132
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.03 E-value=1.3e-09 Score=111.63 Aligned_cols=165 Identities=21% Similarity=0.221 Sum_probs=102.5
Q ss_pred CCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchh-hcCCCCCcCeEEEecCCCcCcCCC-CC
Q 043647 859 PLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAE-RFHNNTSLGCIWIWKCENLKSLPE-GL 936 (1096)
Q Consensus 859 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~-~l 936 (1096)
++|+.|++++|... .+....+..+++|++|++++|. ++.++. .+..+++|++|++++| .++.+|. .+
T Consensus 28 ~~l~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ 96 (208)
T 2o6s_A 28 AQTTYLDLETNSLK---------SLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVF 96 (208)
T ss_dssp TTCSEEECCSSCCC---------CCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred CCCcEEEcCCCccC---------cCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCC-cCCccCHhHh
Confidence 45666666666422 2233345567777777777764 444443 3567777777777775 4555543 35
Q ss_pred CCCCCcCeEEEeCCCCCcccCCCCC--CCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccc
Q 043647 937 PNLNSLHNIYVWDCPSLVSFPEGGL--PNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFP 1014 (1096)
Q Consensus 937 ~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~ 1014 (1096)
..+++|++|+++++ .++.++...+ .++|+.|+++++ .++.++. ..+..+++|++|++++|+-.
T Consensus 97 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~---------~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 97 DKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPD---------GVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT---------TTTTTCTTCCEEECCSCCBC----
T ss_pred cCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeCH---------HHhccCCCccEEEecCCCee----
Confidence 67777777777773 4566655332 367777777775 3444432 24778899999999999432
Q ss_pred cccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCC
Q 043647 1015 EEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCP 1060 (1096)
Q Consensus 1015 ~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~ 1060 (1096)
..+++|+.|+++.+..-..+| ..+..++. ++..|.
T Consensus 162 ------~~~~~l~~L~~~~n~~~g~ip-~~~~~l~~----~~~~C~ 196 (208)
T 2o6s_A 162 ------CTCPGIRYLSEWINKHSGVVR-NSAGSVAP----DSAKCS 196 (208)
T ss_dssp ------CCTTTTHHHHHHHHHCTTTBB-CTTSSBCT----TCSBBT
T ss_pred ------cCCCCHHHHHHHHHhCCceee-ccCccccC----Cccccc
Confidence 345578888888855445666 45555543 444554
No 133
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.03 E-value=4e-09 Score=119.91 Aligned_cols=253 Identities=11% Similarity=0.024 Sum_probs=158.2
Q ss_pred CccccchHHHHHHHHHHhcCCC-CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEP-TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
+.++||+++++++..++..... .....+.+.|+|++|+||||+|+.+++......-..++|++++...+...+...++.
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 96 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIAR 96 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHH
Confidence 5799999999999998854210 111234899999999999999999987543221124667777777788899999999
Q ss_pred hccCCCCC-CCcHHHHHHHHHHHh--CCCcEEEEEecCCCCChhhHHHhhcccCCCC----CCcEEEEEcCchhhhhhcC
Q 043647 257 SITFSPNS-LKDLNQIQVQLREAV--AGKRFLIVLDDVWSKNYSLWNTLKSPFRAGA----SGSKILVTTCSTDVALTVG 329 (1096)
Q Consensus 257 ~l~~~~~~-~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~iivTtR~~~v~~~~~ 329 (1096)
.++..... ..+...+...+.+.+ .+++.+||||+++..+......+...+.... .+..||++|+.......+.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 97 SLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp HTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred HhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 88654321 224455555555555 3678999999998765555666655543211 3667888887764433322
Q ss_pred -------CcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHh---------CCCchhHHHHHHH-h--c
Q 043647 330 -------TAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKC---------RGLPLAAETLGGL-L--R 390 (1096)
Q Consensus 330 -------~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~---------~g~PLai~~~~~~-l--~ 390 (1096)
....+.+++++.++..+++...+..... ...-..+....|++.+ +|.|-.+..+... . .
T Consensus 177 ~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 177 PSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA--EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp HHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC--TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHH
Confidence 1136999999999999999887532100 0112245677888998 7887544433222 1 1
Q ss_pred ---cC--CCHHHHHHHHhhhccccccCCChHHHHHHHHhcCchhhHHHhhhhcccC
Q 043647 391 ---CK--QSDDEWDEILNSKIWYLSEESNILPVLRLSYHHLPSHLKRCFAYCAIFP 441 (1096)
Q Consensus 391 ---~~--~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp 441 (1096)
.. -+.+....+..... ... +.-.+..|+.+.+.++..++.+.
T Consensus 255 ~~~~~~~i~~~~v~~~~~~~~-----~~~----~~~~l~~l~~~~~~~L~~l~~~~ 301 (389)
T 1fnn_A 255 QQNGRKHIAPEDVRKSSKEVL-----FGI----SEEVLIGLPLHEKLFLLAIVRSL 301 (389)
T ss_dssp HHTTCSSCCHHHHHHHHHHHS-----CCC----CHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHhCCCCcCHHHHHHHHHHHh-----hhh----HHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 12333333333211 111 23346678888888877776553
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.03 E-value=1.6e-10 Score=114.78 Aligned_cols=88 Identities=24% Similarity=0.370 Sum_probs=72.0
Q ss_pred cCCCCcceEEEecccccccCCCCcCCCC-ccceeecccccccccccccccCCCCcEEeccCcccCcccCccc-cCCCCCc
Q 043647 552 LPKFTKLRVLSLKKYYITELPHSIGDLK-HLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNL-RNLINLR 629 (1096)
Q Consensus 552 ~~~~~~Lr~L~L~~~~~~~lp~~i~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~l~~L~ 629 (1096)
+..+.+|++|++++|.++.+|. +..+. +|++|++++|.++.+ +.+..+++|++|++++| .+..+|..+ ..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCC
Confidence 5678889999999999888864 55555 899999999999888 67888999999999986 678888766 8899999
Q ss_pred eEEeccccccccCc
Q 043647 630 HLVVTYVDLIREMP 643 (1096)
Q Consensus 630 ~L~l~~~~~~~~~p 643 (1096)
+|++++|. +..+|
T Consensus 92 ~L~L~~N~-i~~~~ 104 (176)
T 1a9n_A 92 ELILTNNS-LVELG 104 (176)
T ss_dssp EEECCSCC-CCCGG
T ss_pred EEECCCCc-CCcch
Confidence 99998887 45444
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.01 E-value=3e-10 Score=138.96 Aligned_cols=109 Identities=23% Similarity=0.247 Sum_probs=96.2
Q ss_pred hhhhhcCCCCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCC
Q 043647 547 VLSNLLPKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLI 626 (1096)
Q Consensus 547 ~~~~~~~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~ 626 (1096)
.++..|..++.|++|+|++|.+..+|..+.++.+|++|+|++|.|+.+|..+++|.+|++|+|++| .+..+|..+++|+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCF 293 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGT
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCC
Confidence 456778899999999999999999999999999999999999999999999999999999999996 6789999999999
Q ss_pred CCceEEeccccccccCcccCCCCCCCCcCCc
Q 043647 627 NLRHLVVTYVDLIREMPLGIKELKCLQMLSN 657 (1096)
Q Consensus 627 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 657 (1096)
+|++|+|++|. +..+|.++++|++|++|..
T Consensus 294 ~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 294 QLKYFYFFDNM-VTTLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp TCSEEECCSSC-CCCCCSSTTSCTTCCCEEC
T ss_pred CCCEEECCCCC-CCccChhhhcCCCccEEeC
Confidence 99999999997 7899999999999998853
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.00 E-value=4.3e-10 Score=111.66 Aligned_cols=104 Identities=19% Similarity=0.208 Sum_probs=90.7
Q ss_pred CCCcceEEEecccccccCCCCcCCCCccceeeccccccccccccc-ccCCCCcEEeccCcccCcccCc--cccCCCCCce
Q 043647 554 KFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESI-CSLCNLQFLILRGCYRLKKLPS--NLRNLINLRH 630 (1096)
Q Consensus 554 ~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~ 630 (1096)
..++|++|++++|.++.+ ..++.+++|++|++++|.|+.+|+.+ ..+++|++|++++| .+..+|. .+..+++|++
T Consensus 40 ~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~ 117 (176)
T 1a9n_A 40 TLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTY 117 (176)
T ss_dssp GTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCE
T ss_pred cCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCE
Confidence 345999999999999988 68999999999999999999998765 89999999999996 6888887 7899999999
Q ss_pred EEeccccccccCccc----CCCCCCCCcCCceEe
Q 043647 631 LVVTYVDLIREMPLG----IKELKCLQMLSNFIV 660 (1096)
Q Consensus 631 L~l~~~~~~~~~p~~----i~~L~~L~~L~~~~~ 660 (1096)
|++++|. +..+|.. ++.+++|+.|+...+
T Consensus 118 L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 118 LCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp EECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred EEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 9999998 6777765 788888888875443
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.95 E-value=4.5e-10 Score=108.09 Aligned_cols=102 Identities=19% Similarity=0.233 Sum_probs=89.2
Q ss_pred CCCCcceEEEecccccc--cCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcc-cCccccCCCCCc
Q 043647 553 PKFTKLRVLSLKKYYIT--ELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKK-LPSNLRNLINLR 629 (1096)
Q Consensus 553 ~~~~~Lr~L~L~~~~~~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~-lp~~i~~l~~L~ 629 (1096)
...++|+.|++++|.++ .+|..++.+++|++|++++|.++.+ ..++++++|++|++++| .+.. +|..+..+++|+
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCC
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCC
Confidence 34578999999999998 8899999999999999999999988 88999999999999997 5665 888778899999
Q ss_pred eEEeccccccccCc--ccCCCCCCCCcCCc
Q 043647 630 HLVVTYVDLIREMP--LGIKELKCLQMLSN 657 (1096)
Q Consensus 630 ~L~l~~~~~~~~~p--~~i~~L~~L~~L~~ 657 (1096)
+|++++|. +..+| ..++.+++|++|..
T Consensus 92 ~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 92 HLNLSGNK-IKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp EEECTTSC-CCSHHHHGGGGGCTTCCEEEC
T ss_pred EEECCCCc-CCChHHHHHHhhCCCCCEEeC
Confidence 99999998 66654 67888888888753
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.94 E-value=4.2e-09 Score=105.90 Aligned_cols=81 Identities=20% Similarity=0.390 Sum_probs=64.0
Q ss_pred eEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCc-cccCCCCCceEEecccc
Q 043647 559 RVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPS-NLRNLINLRHLVVTYVD 637 (1096)
Q Consensus 559 r~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 637 (1096)
++++++++.++.+|..+. .+|++|++++|.|+.+|..+.++.+|++|+|++| .+..+|. .+..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence 478888888888887664 5788888888888888888888888888888885 5666654 47888888888888887
Q ss_pred ccccCc
Q 043647 638 LIREMP 643 (1096)
Q Consensus 638 ~~~~~p 643 (1096)
+..+|
T Consensus 90 -l~~i~ 94 (193)
T 2wfh_A 90 -LRCIP 94 (193)
T ss_dssp -CCBCC
T ss_pred -cCEeC
Confidence 55544
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.92 E-value=7.4e-09 Score=114.42 Aligned_cols=99 Identities=13% Similarity=0.149 Sum_probs=74.1
Q ss_pred CCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCcc-EEEeccCCCCcccC
Q 043647 963 NCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLT-ELVIVRFPKLKYLS 1041 (1096)
Q Consensus 963 ~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~-~L~l~~c~~l~~l~ 1041 (1096)
++|+.+++.++ +++.++. ..|.++++|++|++.++ +..++.. +|..+++|+ .|++.+ +++.|+
T Consensus 226 ~~L~~l~L~~n-~i~~I~~---------~aF~~~~~L~~l~l~~n--i~~I~~~--aF~~~~~L~~~l~l~~--~l~~I~ 289 (329)
T 3sb4_A 226 PNLVSLDISKT-NATTIPD---------FTFAQKKYLLKIKLPHN--LKTIGQR--VFSNCGRLAGTLELPA--SVTAIE 289 (329)
T ss_dssp TTCCEEECTTB-CCCEECT---------TTTTTCTTCCEEECCTT--CCEECTT--TTTTCTTCCEEEEECT--TCCEEC
T ss_pred CCCeEEECCCC-CcceecH---------hhhhCCCCCCEEECCcc--cceehHH--HhhCChhccEEEEEcc--cceEEc
Confidence 56666666653 2444442 46888899999999886 7788765 467888898 898887 688888
Q ss_pred cCCCCCCCCcCeEeeccCCCCCCCCCCCc--ccccccee
Q 043647 1042 SNGFRNLAFLEYLQIRDCPKLTSFPEAGL--PSSLLELY 1078 (1096)
Q Consensus 1042 ~~~l~~l~~L~~L~l~~c~~l~~l~~~~l--~~~L~~L~ 1078 (1096)
...|.++++|+.|++++ +.++.++...+ .++|+.++
T Consensus 290 ~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 290 FGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred hhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 78899999999999877 77888887665 34566654
No 140
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.92 E-value=1.1e-09 Score=129.47 Aligned_cols=95 Identities=24% Similarity=0.330 Sum_probs=76.1
Q ss_pred cceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceEEeccc
Q 043647 557 KLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLVVTYV 636 (1096)
Q Consensus 557 ~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~ 636 (1096)
.|++|++++|.++.+|. ++.+++|++|+|++|.|+.+|..++++++|++|+|++| .+..+| .++.+++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 47888888888888886 88888888888888888888888888888888888885 677788 7888888888888888
Q ss_pred cccccC--cccCCCCCCCCcC
Q 043647 637 DLIREM--PLGIKELKCLQML 655 (1096)
Q Consensus 637 ~~~~~~--p~~i~~L~~L~~L 655 (1096)
. +..+ |..++.+++|+.|
T Consensus 519 ~-l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 519 R-LQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp C-CCSSSTTGGGGGCTTCCEE
T ss_pred C-CCCCCCcHHHhcCCCCCEE
Confidence 7 5555 6666666655555
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.90 E-value=4e-09 Score=106.14 Aligned_cols=81 Identities=17% Similarity=0.248 Sum_probs=63.0
Q ss_pred eEEEecccccccCCCCcCCCCccceeecccccccccccc--cccCCCCcEEeccCcccCccc-CccccCCCCCceEEecc
Q 043647 559 RVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPES--ICSLCNLQFLILRGCYRLKKL-PSNLRNLINLRHLVVTY 635 (1096)
Q Consensus 559 r~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~--i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~ 635 (1096)
++++++++.++.+|..+.. +|++|++++|.+..+|.. +.++++|++|+|++| .+..+ |..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCC
Confidence 5788888888888877654 888888888888888763 788888888888886 45555 66788888888888888
Q ss_pred ccccccCc
Q 043647 636 VDLIREMP 643 (1096)
Q Consensus 636 ~~~~~~~p 643 (1096)
|. +..++
T Consensus 88 N~-l~~~~ 94 (192)
T 1w8a_A 88 NK-IKEIS 94 (192)
T ss_dssp CC-CCEEC
T ss_pred Cc-CCccC
Confidence 87 44443
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.90 E-value=2e-09 Score=108.31 Aligned_cols=99 Identities=31% Similarity=0.449 Sum_probs=83.7
Q ss_pred CcceEEEecccccccCCCCcCCCCccceeecccccccccc-cccccCCCCcEEeccCcccCcccCc-cccCCCCCceEEe
Q 043647 556 TKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLP-ESICSLCNLQFLILRGCYRLKKLPS-NLRNLINLRHLVV 633 (1096)
Q Consensus 556 ~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l 633 (1096)
++|++|++++|.++.+|..|.++.+|++|+|++|.|+.+| ..+.++.+|++|+|++| .+..+|. .+..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEEC
Confidence 5789999999999999989999999999999999999886 46889999999999996 5777665 5789999999999
Q ss_pred ccccccccCccc-CCCCCCCCcCC
Q 043647 634 TYVDLIREMPLG-IKELKCLQMLS 656 (1096)
Q Consensus 634 ~~~~~~~~~p~~-i~~L~~L~~L~ 656 (1096)
++|. +..+|.+ +..+++|+.|.
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 110 HGND-ISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CSSC-CCBCCTTTTTTCTTCCEEE
T ss_pred CCCC-CCeeChhhhhcCccccEEE
Confidence 9988 6777764 77788887774
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.86 E-value=1.5e-09 Score=132.61 Aligned_cols=162 Identities=19% Similarity=0.111 Sum_probs=100.9
Q ss_pred EEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceEEeccccccc
Q 043647 561 LSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLVVTYVDLIR 640 (1096)
Q Consensus 561 L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~ 640 (1096)
++++.+.+...|..+..+.+|++|+|++|.+..+|..+.++.+|++|+|++| .+..+|..+++|++|++|+|++|. +.
T Consensus 206 ~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~ 283 (727)
T 4b8c_D 206 DDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CS
T ss_pred ccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CC
Confidence 3444455555678899999999999999999999999999999999999996 678999999999999999999998 67
Q ss_pred cCcccCCCCCCCCcCCceEecccCCCCcccccccccccceEEEeecCCCCCCcchHHHHHHhhccCCCCCCCeEEEeeeC
Q 043647 641 EMPLGIKELKCLQMLSNFIVGMVTGSRLKDLKDFKLLRGELCISRLDYFDDSRNEALEKNVLDMLQPHRSLKELTVKCYG 720 (1096)
Q Consensus 641 ~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 720 (1096)
.+|..++.|++|+.|..... .+.. +...+..+++|+.|+|++|.
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N------~l~~------------------------------lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDN------MVTT------------------------------LPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSS------CCCC------------------------------CCSSTTSCTTCCCEECTTSC
T ss_pred ccChhhcCCCCCCEEECCCC------CCCc------------------------------cChhhhcCCCccEEeCCCCc
Confidence 89999999988888753211 1111 11235566788888888887
Q ss_pred CCCC-CcccCCccccceeEEeecCCCCCCCCCCCCCcCCcceeeccc
Q 043647 721 GTVF-PSWMGDPLFSNIVLLRLEDCEKCTSLPSLGLLGSLKNLTIKG 766 (1096)
Q Consensus 721 ~~~~-p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~ 766 (1096)
+... |.++... -..+..|+|++|.....+| ..|+.|++.+
T Consensus 328 l~~~~p~~~~~~-~~~~~~l~l~~N~l~~~~p-----~~l~~l~l~~ 368 (727)
T 4b8c_D 328 LEKQFLKILTEK-SVTGLIFYLRDNRPEIPLP-----HERRFIEINT 368 (727)
T ss_dssp CCSHHHHHHHHH-HHHHHHHHHHHCCCCCCCC-----CC--------
T ss_pred cCCCChHHHhhc-chhhhHHhhccCcccCcCc-----cccceeEeec
Confidence 7643 3333221 0112235677765544443 3455555554
No 144
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.85 E-value=1.7e-08 Score=111.32 Aligned_cols=180 Identities=16% Similarity=0.193 Sum_probs=115.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccC-cEEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFN-LRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.+++|++..++.+.+++.... .+.+.|+|++|+||||+|+.+++......+. ..+++..+.....
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~-----~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~--------- 86 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN-----MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGI--------- 86 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC-----CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSH---------
T ss_pred HHHHCCHHHHHHHHHHHHcCC-----CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccCh---------
Confidence 468999999999999985432 2338999999999999999998764222111 2334433332221
Q ss_pred hccCCCCCCCcHHHHHHHHHHHh-------CCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchhh-hhh-
Q 043647 257 SITFSPNSLKDLNQIQVQLREAV-------AGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTDV-ALT- 327 (1096)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~l~~~l-------~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~~- 327 (1096)
+.+...+.... .+++.++|+||++.-....++.+...+.....++.+|+||+...- ...
T Consensus 87 ------------~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l 154 (323)
T 1sxj_B 87 ------------DVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPL 154 (323)
T ss_dssp ------------HHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred ------------HHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHH
Confidence 22222222221 456899999999876656666666666555567788888866432 111
Q ss_pred cCCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchh-HHHHHH
Q 043647 328 VGTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLA-AETLGG 387 (1096)
Q Consensus 328 ~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLa-i~~~~~ 387 (1096)
......+.+.+++.++..+++...+...+ . .-..+....|++.++|.|.. +..+..
T Consensus 155 ~sr~~~i~~~~~~~~~~~~~l~~~~~~~~-~---~~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 155 QSQCAILRYSKLSDEDVLKRLLQIIKLED-V---KYTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHT-C---CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhhceEEeecCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 12235799999999999999988763211 1 11235667899999999954 444433
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=1.8e-08 Score=111.27 Aligned_cols=101 Identities=12% Similarity=0.095 Sum_probs=80.7
Q ss_pred CCCcCeEEEeCCCCCcccCCCCCC--CCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcc-eEEEcCCCCcccccc
Q 043647 939 LNSLHNIYVWDCPSLVSFPEGGLP--NCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLK-ILCVIGCPDAVSFPE 1015 (1096)
Q Consensus 939 l~~L~~L~l~~c~~l~~l~~~~~~--~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~-~L~l~~c~~l~~l~~ 1015 (1096)
+++|+.|++.+ +.++.++...+. ++|+.+++.+. ++.++. ..|.++++|+ .|++.+ .+..++.
T Consensus 225 ~~~L~~l~L~~-n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~---------~aF~~~~~L~~~l~l~~--~l~~I~~ 290 (329)
T 3sb4_A 225 MPNLVSLDISK-TNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQ---------RVFSNCGRLAGTLELPA--SVTAIEF 290 (329)
T ss_dssp CTTCCEEECTT-BCCCEECTTTTTTCTTCCEEECCTT--CCEECT---------TTTTTCTTCCEEEEECT--TCCEECT
T ss_pred cCCCeEEECCC-CCcceecHhhhhCCCCCCEEECCcc--cceehH---------HHhhCChhccEEEEEcc--cceEEch
Confidence 67888888887 347778766554 67888888763 655543 4789999999 999998 6888876
Q ss_pred ccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEee
Q 043647 1016 EEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQI 1056 (1096)
Q Consensus 1016 ~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l 1056 (1096)
. +|..+++|+.|++.+ ++++.|+...|.++++|+.++.
T Consensus 291 ~--aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 291 G--AFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp T--TTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred h--hhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 5 478899999999988 7899999889999999999863
No 146
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.84 E-value=3.1e-09 Score=125.64 Aligned_cols=101 Identities=19% Similarity=0.205 Sum_probs=89.6
Q ss_pred cCCCCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCccc--CccccCCCCCc
Q 043647 552 LPKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKL--PSNLRNLINLR 629 (1096)
Q Consensus 552 ~~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l--p~~i~~l~~L~ 629 (1096)
|..+++|++|+|++|.++.+|..|+.+++|++|+|++|.|+.+| .++++++|++|+|++| .+..+ |..++.+++|+
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCC
T ss_pred ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCC
Confidence 67889999999999999999999999999999999999999998 8999999999999996 67777 89999999999
Q ss_pred eEEeccccccccCcccCCC----CCCCCcC
Q 043647 630 HLVVTYVDLIREMPLGIKE----LKCLQML 655 (1096)
Q Consensus 630 ~L~l~~~~~~~~~p~~i~~----L~~L~~L 655 (1096)
+|++++|. +..+|+.+.. +++|+.|
T Consensus 537 ~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 537 LLNLQGNS-LCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp EEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred EEEecCCc-CCCCccHHHHHHHHCcccCcc
Confidence 99999998 7777665433 5566554
No 147
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.82 E-value=7.3e-09 Score=104.23 Aligned_cols=99 Identities=20% Similarity=0.295 Sum_probs=79.5
Q ss_pred cceEEEecccccccCCCC--cCCCCccceeeccccccccc-ccccccCCCCcEEeccCcccCcccCcc-ccCCCCCceEE
Q 043647 557 KLRVLSLKKYYITELPHS--IGDLKHLRYINLSETMIRCL-PESICSLCNLQFLILRGCYRLKKLPSN-LRNLINLRHLV 632 (1096)
Q Consensus 557 ~Lr~L~L~~~~~~~lp~~--i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~ 632 (1096)
+|++|++++|.+..++.. ++.+++|++|+|++|.|+.+ |..+.++.+|++|+|++| .+..+|.. +..+++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEE
Confidence 788899999998888653 78899999999999998877 678888999999999986 56666554 78889999999
Q ss_pred eccccccccCcccCCCCCCCCcCC
Q 043647 633 VTYVDLIREMPLGIKELKCLQMLS 656 (1096)
Q Consensus 633 l~~~~~~~~~p~~i~~L~~L~~L~ 656 (1096)
+++|......|..++.+++|++|.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEE
Confidence 998884444466788888887774
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.81 E-value=4.3e-11 Score=121.56 Aligned_cols=66 Identities=23% Similarity=0.282 Sum_probs=38.1
Q ss_pred cCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCceEEecccc
Q 043647 570 ELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRHLVVTYVD 637 (1096)
Q Consensus 570 ~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~ 637 (1096)
.+|..++.+++|++|++++|.++.+| .+.++++|++|++++| .+..+|..+..+++|++|++++|.
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQ 104 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEE
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCc
Confidence 33345555666666666666666555 5556666666666654 455555555555566666665554
No 149
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.78 E-value=4.5e-08 Score=97.08 Aligned_cols=124 Identities=23% Similarity=0.272 Sum_probs=64.9
Q ss_pred cCeEEEecCCCcCcCCCCCCCCCCcCeEEEeCCCCCcccCCCCC--CCCcCeEEEccCcCCcCCCCCCCCCCCCcccCCC
Q 043647 918 LGCIWIWKCENLKSLPEGLPNLNSLHNIYVWDCPSLVSFPEGGL--PNCSLSVTIGKCEKLKALPNLNAYESPIDWGLHK 995 (1096)
Q Consensus 918 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~ 995 (1096)
.+.+++++ +.++.+|..+ .++|+.|+++++ .++.++...+ .++|++|+++++ .++.++. ..+.+
T Consensus 9 ~~~l~~~~-~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~---------~~~~~ 74 (177)
T 2o6r_A 9 GTEIRCNS-KGLTSVPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPD---------GVFDK 74 (177)
T ss_dssp TTEEECCS-SCCSSCCTTC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCT---------TTTTT
T ss_pred CCEEEecC-CCCccCCCCC--CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC-cceEeCh---------hHccC
Confidence 34566655 3566666443 367777777773 3555554322 255556665554 3333321 13455
Q ss_pred CCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccC
Q 043647 996 LTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDC 1059 (1096)
Q Consensus 996 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c 1059 (1096)
+++|++|++++| .+..+|... +..+++|+.|++++ +.++.+|...+..+++|++|+++++
T Consensus 75 l~~L~~L~l~~N-~l~~~~~~~--~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 75 LTKLTILYLHEN-KLQSLPNGV--FDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCEEECCCC-CccccCHHH--hhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCC
Confidence 556666666655 455554431 23455566666655 3455555444455555666666553
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.76 E-value=1.6e-08 Score=99.74 Aligned_cols=93 Identities=23% Similarity=0.392 Sum_probs=45.7
Q ss_pred eEEEecccccccCCCCcCCCCccceeeccccccccc-ccccccCCCCcEEeccCcccCcccCccc-cCCCCCceEEeccc
Q 043647 559 RVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCL-PESICSLCNLQFLILRGCYRLKKLPSNL-RNLINLRHLVVTYV 636 (1096)
Q Consensus 559 r~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~l~~L~~L~l~~~ 636 (1096)
+.++++++.+..+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++| .+..+|..+ .++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 345555555555554443 4555555555555544 334455555555555553 444444432 45555555555555
Q ss_pred cccccCccc-CCCCCCCCcC
Q 043647 637 DLIREMPLG-IKELKCLQML 655 (1096)
Q Consensus 637 ~~~~~~p~~-i~~L~~L~~L 655 (1096)
. +..+|.. ++.+++|++|
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEE
T ss_pred c-cceeCHHHhccccCCCEE
Confidence 4 4444433 4444444444
No 151
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.74 E-value=6.5e-08 Score=95.91 Aligned_cols=106 Identities=25% Similarity=0.326 Sum_probs=65.9
Q ss_pred CCccEEEEccCCCcccchh-hcCCCCCcCeEEEecCCCcCcCCC-CCCCCCCcCeEEEeCCCCCcccCCCCCCCCcCeEE
Q 043647 892 RALQQLEILDCPKLESIAE-RFHNNTSLGCIWIWKCENLKSLPE-GLPNLNSLHNIYVWDCPSLVSFPEGGLPNCSLSVT 969 (1096)
Q Consensus 892 ~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~ 969 (1096)
++|+.|++++|. ++.++. .+..+++|++|++++| .++.+|. .+..+++|+.|+++++ .++.++.
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~----------- 93 (177)
T 2o6r_A 28 SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPN----------- 93 (177)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-----------
T ss_pred CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCH-----------
Confidence 456666666654 333332 3455566666666653 3444443 2455555666655552 2333321
Q ss_pred EccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCC
Q 043647 970 IGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFP 1035 (1096)
Q Consensus 970 l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~ 1035 (1096)
..+..+++|++|++++| .+..+|... +..+++|+.|++++++
T Consensus 94 ---------------------~~~~~l~~L~~L~l~~N-~l~~~~~~~--~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 94 ---------------------GVFDKLTQLKELALDTN-QLKSVPDGI--FDRLTSLQKIWLHTNP 135 (177)
T ss_dssp ---------------------TTTTTCTTCCEEECCSS-CCSCCCTTT--TTTCTTCCEEECCSSC
T ss_pred ---------------------HHhhCCcccCEEECcCC-cceEeCHHH--hcCCcccCEEEecCCC
Confidence 24678899999999999 888888753 3568999999999964
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.74 E-value=1.2e-08 Score=100.59 Aligned_cols=90 Identities=24% Similarity=0.287 Sum_probs=78.9
Q ss_pred CcceEEEecccccccC-CCCcCCCCccceeecccccccccccc-cccCCCCcEEeccCcccCcccCcc-ccCCCCCceEE
Q 043647 556 TKLRVLSLKKYYITEL-PHSIGDLKHLRYINLSETMIRCLPES-ICSLCNLQFLILRGCYRLKKLPSN-LRNLINLRHLV 632 (1096)
Q Consensus 556 ~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~ 632 (1096)
++|++|+|++|.++.+ |..|.++++|++|+|++|.|+.+|.. +.++.+|++|+|++| .+..+|.. +..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEEE
Confidence 7899999999999988 67899999999999999999999876 589999999999995 78888876 89999999999
Q ss_pred eccccccccCcccCC
Q 043647 633 VTYVDLIREMPLGIK 647 (1096)
Q Consensus 633 l~~~~~~~~~p~~i~ 647 (1096)
+++|. +...+..+.
T Consensus 112 L~~N~-~~c~~~~~~ 125 (174)
T 2r9u_A 112 LYNNP-WDCECRDIM 125 (174)
T ss_dssp CCSSC-BCTTBGGGH
T ss_pred eCCCC-cccccccHH
Confidence 99997 555554443
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.73 E-value=2e-08 Score=98.59 Aligned_cols=95 Identities=22% Similarity=0.314 Sum_probs=60.8
Q ss_pred ceEEEecccccccCCCCcCCCCccceeeccccccccc-ccccccCCCCcEEeccCcccCcccCcc-ccCCCCCceEEecc
Q 043647 558 LRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCL-PESICSLCNLQFLILRGCYRLKKLPSN-LRNLINLRHLVVTY 635 (1096)
Q Consensus 558 Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~ 635 (1096)
.++|+++++.++.+|..+. .+|++|+|++|.|+.+ |..+.++.+|++|+|++| .+..+|.. +..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence 3466777777776666553 6677777777777666 445666777777777764 56666654 36677777777776
Q ss_pred ccccccCccc-CCCCCCCCcCC
Q 043647 636 VDLIREMPLG-IKELKCLQMLS 656 (1096)
Q Consensus 636 ~~~~~~~p~~-i~~L~~L~~L~ 656 (1096)
|. +..+|.+ ++.+++|+.|.
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEE
T ss_pred Cc-cCEeCHHHhcCCCCCCEEE
Confidence 66 5555543 56666666653
No 154
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.69 E-value=4.7e-10 Score=113.83 Aligned_cols=102 Identities=21% Similarity=0.287 Sum_probs=83.3
Q ss_pred hcCCCCcceEEEecccccccCCCCcCCCCccceeecccccccccccccccCCCCcEEeccCcccCcccCccccCCCCCce
Q 043647 551 LLPKFTKLRVLSLKKYYITELPHSIGDLKHLRYINLSETMIRCLPESICSLCNLQFLILRGCYRLKKLPSNLRNLINLRH 630 (1096)
Q Consensus 551 ~~~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 630 (1096)
.|..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+..+++|++|++++| .+..+| .+..+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCCE
Confidence 5667888999999999888888 888889999999999999888888888889999999986 677777 5888899999
Q ss_pred EEeccccccccCcc--cCCCCCCCCcCC
Q 043647 631 LVVTYVDLIREMPL--GIKELKCLQMLS 656 (1096)
Q Consensus 631 L~l~~~~~~~~~p~--~i~~L~~L~~L~ 656 (1096)
|++++|. +..+|. .+..+++|++|.
T Consensus 120 L~l~~N~-i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 120 LYMSNNK-ITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp EEESEEE-CCCHHHHHHHTTTTTCSEEE
T ss_pred EECCCCc-CCchhHHHHHhcCCCCCEEE
Confidence 9998887 555543 566677776664
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.68 E-value=1.6e-06 Score=97.59 Aligned_cols=82 Identities=11% Similarity=0.097 Sum_probs=61.0
Q ss_pred cCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCCCCC--
Q 043647 992 GLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFPEAG-- 1069 (1096)
Q Consensus 992 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~-- 1069 (1096)
.|.++++|+.+.+.+ .+..++.. +|..+++|+.+.|.. +++.|+...|.++ +|+.+.+.+ +.+..++...
T Consensus 295 aF~~c~~L~~l~l~~--~i~~I~~~--aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~-n~~~~l~~~~F~ 366 (401)
T 4fdw_A 295 CLEGCPKLARFEIPE--SIRILGQG--LLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG-TTPPQVFEKVWY 366 (401)
T ss_dssp TTTTCTTCCEECCCT--TCCEECTT--TTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC-SSCCBCCCSSCC
T ss_pred HhhCCccCCeEEeCC--ceEEEhhh--hhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC-CCCccccccccc
Confidence 677888888888874 47777764 467788888888854 4888887788888 899999988 5666666543
Q ss_pred -ccccccceeecc
Q 043647 1070 -LPSSLLELYIND 1081 (1096)
Q Consensus 1070 -l~~~L~~L~i~~ 1081 (1096)
++.++..|++-.
T Consensus 367 ~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 367 GFPDDITVIRVPA 379 (401)
T ss_dssp CSCTTCCEEEECG
T ss_pred CCCCCccEEEeCH
Confidence 355777887754
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.65 E-value=5.4e-07 Score=101.53 Aligned_cols=190 Identities=10% Similarity=0.125 Sum_probs=139.1
Q ss_pred CcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCC-CCCCC
Q 043647 860 LLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLP-EGLPN 938 (1096)
Q Consensus 860 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~ 938 (1096)
+|+.+.+.+. +..+....|.++++|+.+++.++. ++.++...-.+.+|+.+.+.+ .++.++ ..|.+
T Consensus 158 ~L~~i~lp~~----------l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~ 224 (401)
T 4fdw_A 158 TVQEIVFPST----------LEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLK 224 (401)
T ss_dssp CCCEEECCTT----------CCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCT--TCCEECTTTTTT
T ss_pred CceEEEeCCC----------ccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCC--chheehhhHhhC
Confidence 5666666542 233455667788888888888764 667766544468888888874 466665 45778
Q ss_pred CCCcCeEEEeCCCCCcccCCCCCC-CCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCcc-----c
Q 043647 939 LNSLHNIYVWDCPSLVSFPEGGLP-NCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDAV-----S 1012 (1096)
Q Consensus 939 l~~L~~L~l~~c~~l~~l~~~~~~-~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l~-----~ 1012 (1096)
+++|+.+++.+ +++.++...+. .+|+.+.+.+ +++.++. ..|.++++|+.+.+.++ .+. .
T Consensus 225 ~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp~--~i~~I~~---------~aF~~c~~L~~l~l~~~-~~~~~~~~~ 290 (401)
T 4fdw_A 225 TSQLKTIEIPE--NVSTIGQEAFRESGITTVKLPN--GVTNIAS---------RAFYYCPELAEVTTYGS-TFNDDPEAM 290 (401)
T ss_dssp CTTCCCEECCT--TCCEECTTTTTTCCCSEEEEET--TCCEECT---------TTTTTCTTCCEEEEESS-CCCCCTTCE
T ss_pred CCCCCEEecCC--CccCccccccccCCccEEEeCC--CccEECh---------hHhhCCCCCCEEEeCCc-cccCCcccE
Confidence 88888888875 46777655443 6788888853 4555432 47899999999999987 332 4
Q ss_pred cccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCCCCCccc-cccceeeccC
Q 043647 1013 FPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFPEAGLPS-SLLELYINDY 1082 (1096)
Q Consensus 1013 l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~l~~-~L~~L~i~~c 1082 (1096)
++.. +|..+++|+.+.+.+ +++.|+...|.++++|+.+.|.+ .+++++...+.. +|+.|++.++
T Consensus 291 I~~~--aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~~L~~l~l~~n 355 (401)
T 4fdw_A 291 IHPY--CLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNTGIKEVKVEGT 355 (401)
T ss_dssp ECTT--TTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSSCCCEEEECCS
T ss_pred ECHH--HhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCCCCCEEEEcCC
Confidence 5554 468899999999984 59999988999999999999965 588888766521 8999999875
No 157
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.62 E-value=2.1e-07 Score=102.78 Aligned_cols=181 Identities=15% Similarity=0.121 Sum_probs=115.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccccc-CcEEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMF-NLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.+++|+++.++.+..++... ..+.+.|+|++|+||||+|+.+++......+ ...+.+..+......
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~-------- 91 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG-----SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGIN-------- 91 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT-----CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHH--------
T ss_pred HHhhCCHHHHHHHHHHHHcC-----CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchH--------
Confidence 45899999999999988653 2334899999999999999999875322111 112333322211110
Q ss_pred hccCCCCCCCcHHHHHHHHHHH-----h-CCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchhhh-hhc-
Q 043647 257 SITFSPNSLKDLNQIQVQLREA-----V-AGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTDVA-LTV- 328 (1096)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~l~~~-----l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~-~~~- 328 (1096)
.+...+.+. + .+++.++|+||++......++.+...+.....++++|+||...... ..+
T Consensus 92 -------------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 92 -------------VIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp -------------TTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred -------------HHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH
Confidence 011111111 1 2678899999998766566777766665555677888888765321 111
Q ss_pred CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHHHH
Q 043647 329 GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGGL 388 (1096)
Q Consensus 329 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 388 (1096)
.....+.+.+++.++..+++...+...+ . .-..+....|++.++|.|..+..+...
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~~~~-~---~~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAENEG-L---ELTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHHTTT-C---EECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHHhcC-C---CCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 1224789999999999999988764322 1 122456778999999999866544433
No 158
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.61 E-value=6.9e-08 Score=94.75 Aligned_cols=82 Identities=29% Similarity=0.389 Sum_probs=74.4
Q ss_pred CCcceEEEecccccccC-CCCcCCCCccceeecccccccccccc-cccCCCCcEEeccCcccCcccCcc-ccCCCCCceE
Q 043647 555 FTKLRVLSLKKYYITEL-PHSIGDLKHLRYINLSETMIRCLPES-ICSLCNLQFLILRGCYRLKKLPSN-LRNLINLRHL 631 (1096)
Q Consensus 555 ~~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L 631 (1096)
.++|++|+|++|.++.+ |..|..+.+|++|+|++|.|+.+|.. +.++.+|++|+|++| .+..+|.. +..+++|++|
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEE
Confidence 37899999999999988 67799999999999999999999875 589999999999996 78888875 7899999999
Q ss_pred Eecccc
Q 043647 632 VVTYVD 637 (1096)
Q Consensus 632 ~l~~~~ 637 (1096)
++++|.
T Consensus 108 ~L~~N~ 113 (170)
T 3g39_A 108 WLLNNP 113 (170)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 999997
No 159
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.52 E-value=1.2e-06 Score=98.55 Aligned_cols=194 Identities=16% Similarity=0.183 Sum_probs=114.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.+++|+++.++.+..++.... ..+.+.|+|++|+||||+|+.+.+..... .+.. .+.........+..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------~~~~~~~~~~~~~~ 84 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIEQ 84 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-------SCCSSSHHHHHHHT
T ss_pred hhccCcHHHHHHHHHHHHhCC----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCcccHHHHHHhc
Confidence 358999999999999886532 23578899999999999999988754321 1100 00000001111111
Q ss_pred hc-------cCCC-CCCCcHHHHHHHHHHH-hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchh-hhh
Q 043647 257 SI-------TFSP-NSLKDLNQIQVQLREA-VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTD-VAL 326 (1096)
Q Consensus 257 ~l-------~~~~-~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~ 326 (1096)
.- .... ....+..++...+... ..+++.++|+||++.-+...++.+...+.....+..+|++|.... +..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 164 (373)
T 1jr3_A 85 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (373)
T ss_dssp SCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCH
T ss_pred cCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcH
Confidence 00 0000 1112222222222111 135678999999977665667777666655445667777776443 111
Q ss_pred h-cCCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHH
Q 043647 327 T-VGTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLG 386 (1096)
Q Consensus 327 ~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 386 (1096)
. ......+.+.+++.++..+++...+-..+ . .-..+....|++.++|.|..+..+.
T Consensus 165 ~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~-~---~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 165 TILSRCLQFHLKALDVEQIRHQLEHILNEEH-I---AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-C---CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHhheeEeeCCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1 12236789999999999999987663211 1 1123556789999999998776554
No 160
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.50 E-value=6.8e-07 Score=95.52 Aligned_cols=170 Identities=11% Similarity=0.035 Sum_probs=104.1
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-c---c-C-cEEEEEecCccChHHHHH
Q 043647 179 AVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-M---F-N-LRSWVCVSDDFDILRITK 252 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~---f-~-~~~wv~~~~~~~~~~~~~ 252 (1096)
.+.||+++.++|...|...- ..+..+.+.|+|++|+|||++|+.|+++.... . . + ..++|++....+...++.
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i-~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSL-MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 37899999999988775421 12346788999999999999999999875432 1 1 1 355677667778889999
Q ss_pred HHHHhccCCCCCC-CcHHHHHHHHHHH--hCCCcEEEEEecCCCCChhhHHHhhcccCC-CCCCc--EEEEEcCchhh--
Q 043647 253 SILESITFSPNSL-KDLNQIQVQLREA--VAGKRFLIVLDDVWSKNYSLWNTLKSPFRA-GASGS--KILVTTCSTDV-- 324 (1096)
Q Consensus 253 ~i~~~l~~~~~~~-~~~~~~~~~l~~~--l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs--~iivTtR~~~v-- 324 (1096)
.|++++.+..... ...+.+...+... -++++++++||+++.-. .-+.+...+.+ ....+ .||.++...+.
T Consensus 100 ~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 100 KIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 9999997653222 2233333333332 24678999999996642 11222222211 01122 33333433221
Q ss_pred -------hhhcCCcceeeCCCCChHhHHHHHHHhh
Q 043647 325 -------ALTVGTAEYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 325 -------~~~~~~~~~~~l~~L~~~~~~~lf~~~a 352 (1096)
...++ ...+.+.+++.++-.+++.+++
T Consensus 178 ~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 178 EQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred hhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 11111 2468999999999999998876
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.49 E-value=7.4e-06 Score=92.69 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=27.6
Q ss_pred cCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeec
Q 043647 992 GLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIR 1057 (1096)
Q Consensus 992 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~ 1057 (1096)
.|.++++|+.++|.+ .++.++.. +|..+++|+.+.+.. +++.|+...|.++++|+++++.
T Consensus 315 aF~~c~~L~~i~lp~--~v~~I~~~--aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 315 AFESCTSLVSIDLPY--LVEEIGKR--SFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTTCTTCCEECCCT--TCCEECTT--TTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred hhcCCCCCCEEEeCC--cccEEhHH--hccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence 344555555555432 24444332 234445555554433 2445544455555555555543
No 162
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.47 E-value=9.8e-07 Score=96.93 Aligned_cols=182 Identities=14% Similarity=0.100 Sum_probs=112.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccC-cEEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFN-LRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.+++|++..++.+.+++... ..+.+.|+|++|+|||++|+.+++......+. ..+.++.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~---------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK-----NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG---------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT-----CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC----------
T ss_pred HHHhCCHHHHHHHHHHHhCC-----CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC----------
Confidence 45899999999998887432 23348999999999999999998753221111 122333332111
Q ss_pred hccCCCCCCCcHHHHHHHHHHH--h-CCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchh-hhhh-cCCc
Q 043647 257 SITFSPNSLKDLNQIQVQLREA--V-AGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTD-VALT-VGTA 331 (1096)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~ 331 (1096)
.............. + .+++.++|+|+++.-.....+.+...+.....+.++|+||.... +... ....
T Consensus 82 --------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 82 --------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp --------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred --------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhC
Confidence 11111111111111 1 26688999999977665666677766665556778888876543 1111 1223
Q ss_pred ceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHH
Q 043647 332 EYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLG 386 (1096)
Q Consensus 332 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 386 (1096)
..+.+.+++.++..+++...+...+ . .-..+....+++.++|.+..+....
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~-~---~i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEG-V---KITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTC-C---CBCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5799999999999999887763322 1 1224566788899999987655433
No 163
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.38 E-value=1.3e-06 Score=96.19 Aligned_cols=182 Identities=14% Similarity=0.097 Sum_probs=107.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
.+++|++..++++..++............+.|+|++|+|||++|+.+++.... ...++.++......++
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~----~~~~~~~~~~~~~~~l------- 80 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV----NLRVTSGPAIEKPGDL------- 80 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC----CEEEECTTTCCSHHHH-------
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC----CEEEEeccccCChHHH-------
Confidence 46999999999888877431100112356889999999999999999874321 1234433322221111
Q ss_pred ccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCC------------------CCCcEEEEEc
Q 043647 258 ITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAG------------------ASGSKILVTT 319 (1096)
Q Consensus 258 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------------------~~gs~iivTt 319 (1096)
...+... ..++.+|+||++........+.+...+... ..+..+|.||
T Consensus 81 --------------~~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t 145 (324)
T 1hqc_A 81 --------------AAILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT 145 (324)
T ss_dssp --------------HHHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEE
T ss_pred --------------HHHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeC
Confidence 1111110 135678999999776544444443322211 0234566666
Q ss_pred Cchh-hhhhc-CC-cceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHHHHHh
Q 043647 320 CSTD-VALTV-GT-AEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETLGGLL 389 (1096)
Q Consensus 320 R~~~-v~~~~-~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 389 (1096)
.... +...+ .. ...+.+.+++.++..+++...+...+ . .-..+....+++.++|.|-.+..+...+
T Consensus 146 ~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~-~---~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 146 TRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG-V---RITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp SCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTT-C---CCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcC-C---CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 5432 11111 11 24789999999999999988774322 1 1224567889999999998776655443
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.38 E-value=3.9e-07 Score=101.49 Aligned_cols=82 Identities=13% Similarity=0.221 Sum_probs=43.5
Q ss_pred EEeccc-ccccCCCCcCCCCccceeeccc-ccccccc-cccccCCCCcEEeccCcccCcccCc-cccCCCCCceEEeccc
Q 043647 561 LSLKKY-YITELPHSIGDLKHLRYINLSE-TMIRCLP-ESICSLCNLQFLILRGCYRLKKLPS-NLRNLINLRHLVVTYV 636 (1096)
Q Consensus 561 L~L~~~-~~~~lp~~i~~l~~Lr~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~ 636 (1096)
++++++ .++.+|. |..+.+|++|+|++ |.|..+| ..|.+|.+|++|+|++| .+..+|. .+.+|++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence 355554 5555555 55555555555554 5555554 34555555555555554 3444433 3455555555555555
Q ss_pred cccccCccc
Q 043647 637 DLIREMPLG 645 (1096)
Q Consensus 637 ~~~~~~p~~ 645 (1096)
. +..+|..
T Consensus 91 ~-l~~~~~~ 98 (347)
T 2ifg_A 91 A-LESLSWK 98 (347)
T ss_dssp C-CSCCCST
T ss_pred c-cceeCHH
Confidence 5 4445443
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.31 E-value=3e-05 Score=87.69 Aligned_cols=191 Identities=16% Similarity=0.135 Sum_probs=119.7
Q ss_pred cCCCCCCcceEEeccCCCccccCCCCcccccCCCCCCCCCccEEEEccCCCcccchhhcCCCCCcCeEEEecCCCcCcCC
Q 043647 854 SFSSLPLLCKLEIDRCKGVACRSPADLMSINSDSFKYFRALQQLEILDCPKLESIAERFHNNTSLGCIWIWKCENLKSLP 933 (1096)
Q Consensus 854 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp 933 (1096)
.|..+++|+.+.+..+ +..+....+...+.|+.+.+.+. ...+........+|+.+.+.. .++.+.
T Consensus 180 ~F~~c~~L~~i~l~~~----------~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~ip~--~~~~i~ 245 (394)
T 4fs7_A 180 LFSGCGKLKSIKLPRN----------LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNIIIPD--SFTELG 245 (394)
T ss_dssp TTTTCTTCCBCCCCTT----------CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEECT--TCCEEC
T ss_pred cccCCCCceEEEcCCC----------ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceEEECC--Cceecc
Confidence 4556667776666543 12233445556666666665543 233444445566777777754 233333
Q ss_pred -CCCCCCCCcCeEEEeCCCCCcccCCCCCC--CCcCeEEEccCcCCcCCCCCCCCCCCCcccCCCCCCcceEEEcCCCCc
Q 043647 934 -EGLPNLNSLHNIYVWDCPSLVSFPEGGLP--NCSLSVTIGKCEKLKALPNLNAYESPIDWGLHKLTSLKILCVIGCPDA 1010 (1096)
Q Consensus 934 -~~l~~l~~L~~L~l~~c~~l~~l~~~~~~--~~L~~L~l~~c~~l~~l~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~l 1010 (1096)
..+..+.+|+.+.+.. .+..+....+. ..++.+...... ++ ...+..+.+|+.+.+.++ +
T Consensus 246 ~~~f~~~~~l~~~~~~~--~~~~i~~~~F~~~~~l~~~~~~~~~----i~---------~~~F~~~~~L~~i~l~~~--i 308 (394)
T 4fs7_A 246 KSVFYGCTDLESISIQN--NKLRIGGSLFYNCSGLKKVIYGSVI----VP---------EKTFYGCSSLTEVKLLDS--V 308 (394)
T ss_dssp SSTTTTCSSCCEEEECC--TTCEECSCTTTTCTTCCEEEECSSE----EC---------TTTTTTCTTCCEEEECTT--C
T ss_pred cccccccccceeEEcCC--CcceeeccccccccccceeccCcee----ec---------cccccccccccccccccc--c
Confidence 3456677777777764 23344433222 344444433211 11 125778899999999754 7
Q ss_pred cccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCCCCCc--cccccceeecc
Q 043647 1011 VSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFPEAGL--PSSLLELYIND 1081 (1096)
Q Consensus 1011 ~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~l--~~~L~~L~i~~ 1081 (1096)
..++.. +|..+++|+.++|.+ .++.|+...|.++++|+.+.+.. .+++++...+ ..+|+.+++..
T Consensus 309 ~~I~~~--aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 309 KFIGEE--AFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CEECTT--TTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred ceechh--hhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 777764 467889999999864 58999888999999999999975 3788887666 35788887754
No 166
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.28 E-value=9.8e-07 Score=98.18 Aligned_cols=85 Identities=20% Similarity=0.208 Sum_probs=75.3
Q ss_pred cCCCCcceEEEecc-cccccCC-CCcCCCCccceeeccccccccccc-ccccCCCCcEEeccCcccCcccCccccCCCCC
Q 043647 552 LPKFTKLRVLSLKK-YYITELP-HSIGDLKHLRYINLSETMIRCLPE-SICSLCNLQFLILRGCYRLKKLPSNLRNLINL 628 (1096)
Q Consensus 552 ~~~~~~Lr~L~L~~-~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L 628 (1096)
+..+++|+.|+|++ |.+..+| ..|++|.+|++|+|++|.|+.+|+ .|.+|.+|++|+|++| .+..+|..+....+|
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSL 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCCc
Confidence 78899999999996 9999986 679999999999999999998865 6899999999999995 788998876555559
Q ss_pred ceEEecccc
Q 043647 629 RHLVVTYVD 637 (1096)
Q Consensus 629 ~~L~l~~~~ 637 (1096)
++|++.+|.
T Consensus 106 ~~l~l~~N~ 114 (347)
T 2ifg_A 106 QELVLSGNP 114 (347)
T ss_dssp CEEECCSSC
T ss_pred eEEEeeCCC
Confidence 999999887
No 167
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.24 E-value=2.9e-06 Score=85.29 Aligned_cols=46 Identities=26% Similarity=0.406 Sum_probs=38.5
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
..++||+++++++.+++... ..+.+.|+|++|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR-----TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS-----SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC-----CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35899999999999998542 24568899999999999999998754
No 168
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.19 E-value=9.4e-06 Score=90.44 Aligned_cols=193 Identities=11% Similarity=0.091 Sum_probs=111.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccC-cEEEEEecCccChHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFN-LRSWVCVSDDFDILRITKSIL 255 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~-~~~wv~~~~~~~~~~~~~~i~ 255 (1096)
.+++|+++.++.+..++.... .+.+.|+|++|+||||+|+.+.+..... .+. .+..+..+.......+ ++..
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~-----~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 110 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN-----LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKV 110 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT-----CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHH
T ss_pred HHhhCCHHHHHHHHHHHhcCC-----CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHH
Confidence 468999999999999884432 2338999999999999999998764221 111 2333333332222222 1111
Q ss_pred HhccCC-CCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchh-hhhhc-CCcc
Q 043647 256 ESITFS-PNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTD-VALTV-GTAE 332 (1096)
Q Consensus 256 ~~l~~~-~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~ 332 (1096)
...... ....... .....-.+++-+|++|++........+.+...+.......++|++|.... +...+ ....
T Consensus 111 ~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 111 KNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS 185 (353)
T ss_dssp HHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred HHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCc
Confidence 111100 0000000 00111124567999999976655555666655554445567777775442 11111 1124
Q ss_pred eeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHH
Q 043647 333 YYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETL 385 (1096)
Q Consensus 333 ~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 385 (1096)
.+.+.+++.++....+...+...+ . .-..+....|++.++|.|-.+..+
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~~-~---~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQEN-V---KCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTT-C---CCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhC-C---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 788999999999998887763221 1 122456788999999998765443
No 169
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.16 E-value=6.6e-07 Score=86.07 Aligned_cols=70 Identities=16% Similarity=0.206 Sum_probs=45.3
Q ss_pred CCCCCCcceEEEcCCCCccccccccccCcC----CCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCC
Q 043647 993 LHKLTSLKILCVIGCPDAVSFPEEEIGMTF----PSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTS 1064 (1096)
Q Consensus 993 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~----~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~ 1064 (1096)
+.++++|++|+|++|..+++-.-.. +.. .++|++|+|++|+++++-....+..+++|++|+|++|+.++.
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~--L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLER--LSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHH--HHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHH--HHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 4566777778888876665522111 111 246888888888777753223455678888888888888776
No 170
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.15 E-value=1.9e-06 Score=90.18 Aligned_cols=173 Identities=13% Similarity=0.094 Sum_probs=98.4
Q ss_pred Cccccc---hHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHH
Q 043647 178 PAVFGR---DEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSI 254 (1096)
Q Consensus 178 ~~~vgr---~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 254 (1096)
.+++|. +..++.+..+.... ..+.+.|+|++|+||||+|+.+++..... ...+.|+.++.-.+. +
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~ll~G~~G~GKT~la~~l~~~~~~~-~~~~~~~~~~~~~~~------~ 95 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD-----GVQAIYLWGPVKSGRTHLIHAACARANEL-ERRSFYIPLGIHASI------S 95 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC-----SCSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEGGGGGGS------C
T ss_pred hhccCCCCCHHHHHHHHHHHhCC-----CCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEHHHHHHH------H
Confidence 356663 34555555555322 24678999999999999999998754332 234566665432110 0
Q ss_pred HHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhh--HHHhhcccCCC-CCC-cEEEEEcCchh-------
Q 043647 255 LESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSL--WNTLKSPFRAG-ASG-SKILVTTCSTD------- 323 (1096)
Q Consensus 255 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~iivTtR~~~------- 323 (1096)
.. .+ +.+ .++.+||+||++...... .+.+...+... ..+ .++|+||+...
T Consensus 96 ~~-----------------~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~ 156 (242)
T 3bos_A 96 TA-----------------LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVL 156 (242)
T ss_dssp GG-----------------GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCC
T ss_pred HH-----------------HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhh
Confidence 00 00 011 346789999997543222 23333322111 112 24777776322
Q ss_pred --hhhhcCCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHH
Q 043647 324 --VALTVGTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETL 385 (1096)
Q Consensus 324 --v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 385 (1096)
+...+.....+.+.+++.++..+++...+...+ . .-..++...|++.++|.+-.+..+
T Consensus 157 ~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~-~---~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 157 PDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRG-L---QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTT-C---CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred hhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHccCCHHHHHHH
Confidence 111112225789999999999999988763211 1 122456678889999988665543
No 171
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.13 E-value=1.8e-05 Score=87.43 Aligned_cols=177 Identities=14% Similarity=0.153 Sum_probs=104.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
.+++|++..++++..++............|.|+|++|+|||++|+.+++.... . .+.++++....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~-~---~~~~~~~~~~~----------- 93 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSA-N---IKTTAAPMIEK----------- 93 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTC-C---EEEEEGGGCCS-----------
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-C---eEEecchhccc-----------
Confidence 46899999999998888542111123456899999999999999999764321 1 22233221111
Q ss_pred ccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCCC------------------CCcEEEEEc
Q 043647 258 ITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGA------------------SGSKILVTT 319 (1096)
Q Consensus 258 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~iivTt 319 (1096)
.......+.. ..+..+|+||++..........+...+.... ++..+|.+|
T Consensus 94 ----------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~at 161 (338)
T 3pfi_A 94 ----------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGAT 161 (338)
T ss_dssp ----------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEE
T ss_pred ----------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeC
Confidence 1111111111 2456789999997765444444444332211 124566555
Q ss_pred Cchhh-hhhc--CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHH
Q 043647 320 CSTDV-ALTV--GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETL 385 (1096)
Q Consensus 320 R~~~v-~~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 385 (1096)
..... ...+ .....+.+.+++.++..+++.+.+-... ..-..+....|++.+.|.|-.+..+
T Consensus 162 n~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~----~~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 162 TRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN----KTCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp SCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT----CEECHHHHHHHHHTTTTCHHHHHHH
T ss_pred CCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHCcCHHHHHHH
Confidence 54321 1111 1225799999999999999987763221 1223456678888899998554433
No 172
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.10 E-value=1.8e-05 Score=92.48 Aligned_cols=196 Identities=15% Similarity=0.121 Sum_probs=107.4
Q ss_pred CccccchHHHHHHHHHHhcCC------------CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCcc
Q 043647 178 PAVFGRDEDKAKILEMVLRDE------------PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDF 245 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~------------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~ 245 (1096)
.+++|+++.++++.+++.... .+....+.+.|+|++|+||||+|+.+++... + .++.++++...
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~---~-~~i~in~s~~~ 114 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG---Y-DILEQNASDVR 114 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT---C-EEEEECTTSCC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC---C-CEEEEeCCCcc
Confidence 468999999999999986410 0011346899999999999999999987541 1 13344444433
Q ss_pred ChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCCh---hhHHHhhcccCCCCCCcEEEEEcCch
Q 043647 246 DILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNY---SLWNTLKSPFRAGASGSKILVTTCST 322 (1096)
Q Consensus 246 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~~~l~~~l~~~~~gs~iivTtR~~ 322 (1096)
.. .+....+........-..-...... .....+++.+||+|+++.-.. ..+..+...+... +..||+++.+.
T Consensus 115 ~~-~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 115 SK-TLLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp CH-HHHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred hH-HHHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 33 2333333222111000000000000 001236788999999965422 1233343333222 33455555432
Q ss_pred h---hhhhcCCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCc-hhHHHHH
Q 043647 323 D---VALTVGTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLP-LAAETLG 386 (1096)
Q Consensus 323 ~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~ 386 (1096)
. +.........+.+++++.++..+.+...+...+. .. ..+....|++.++|.+ -|+..+.
T Consensus 190 ~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~-~i---~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 190 NLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKF-KL---DPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp TSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CC---CTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred CCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 2 2211122356899999999999988877643221 11 1245678899999954 4455443
No 173
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.10 E-value=1.5e-05 Score=89.26 Aligned_cols=194 Identities=13% Similarity=0.091 Sum_probs=105.7
Q ss_pred CccccchHHHHH---HHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEec----CccChHHH
Q 043647 178 PAVFGRDEDKAK---ILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVS----DDFDILRI 250 (1096)
Q Consensus 178 ~~~vgr~~~~~~---l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~----~~~~~~~~ 250 (1096)
.+++|++..++. +.+.+.... ...+.+.|+|++|+|||++|+.+++..... . ..+.+... ......+.
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~---~~~~~vLl~GppGtGKT~la~~la~~l~~~-~-~~~~~~~~~~~~~~~~~~~~ 118 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK---IAGRAVLIAGQPGTGKTAIAMGMAQALGPD-T-PFTAIAGSEIFSLEMSKTEA 118 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC---CTTCEEEEEESTTSSHHHHHHHHHHHHCSS-C-CEEEEEGGGGSCSSSCHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC---CCCCEEEEECCCCCCHHHHHHHHHHHhccc-C-CcccccchhhhhcccchhHH
Confidence 469999988766 445443322 123688999999999999999999764321 0 11122211 12233344
Q ss_pred HHHHHHhccCC------------------------------CCCCCcHHHHHHHHHHHh-----CCC----cEEEEEecC
Q 043647 251 TKSILESITFS------------------------------PNSLKDLNQIQVQLREAV-----AGK----RFLIVLDDV 291 (1096)
Q Consensus 251 ~~~i~~~l~~~------------------------------~~~~~~~~~~~~~l~~~l-----~~k----r~LlVlDdv 291 (1096)
..+.+...... .........+...+.+.. .++ +.+|+||++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi 198 (368)
T 3uk6_A 119 LTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEV 198 (368)
T ss_dssp HHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESG
T ss_pred HHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhc
Confidence 44433331110 000000122222222211 233 359999999
Q ss_pred CCCChhhHHHhhcccCCCCCCcEEEEEcCc-----------------hhhhhhcCCcceeeCCCCChHhHHHHHHHhhcC
Q 043647 292 WSKNYSLWNTLKSPFRAGASGSKILVTTCS-----------------TDVALTVGTAEYYNLKLLSDDDCWSVFVKHAFE 354 (1096)
Q Consensus 292 ~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-----------------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~ 354 (1096)
..-.....+.+...+...... .++++|.. +.+.. ....+.+.+++.++..+++...+-.
T Consensus 199 ~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s---R~~~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 199 HMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD---RLLIVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp GGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT---TEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHh---hccEEEecCCCHHHHHHHHHHHHHH
Confidence 876656666666555443333 34444421 12222 2245799999999999999877633
Q ss_pred CCCCCCCcchhHHHHHHHHHhC-CCchhHHH
Q 043647 355 KRDVGLHRHMGSIRKKVVQKCR-GLPLAAET 384 (1096)
Q Consensus 355 ~~~~~~~~~~~~~~~~i~~~~~-g~PLai~~ 384 (1096)
.. . .-..+....|++.+. |.|-.+..
T Consensus 275 ~~-~---~~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 275 ED-V---EMSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp TT-C---CBCHHHHHHHHHHHHHSCHHHHHH
T ss_pred cC-C---CCCHHHHHHHHHHhcCCCHHHHHH
Confidence 22 1 122456677888887 77755443
No 174
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.09 E-value=9.5e-05 Score=83.88 Aligned_cols=176 Identities=19% Similarity=0.166 Sum_probs=100.8
Q ss_pred CccccchHHH---HHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCcc-ChHHHHHH
Q 043647 178 PAVFGRDEDK---AKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDF-DILRITKS 253 (1096)
Q Consensus 178 ~~~vgr~~~~---~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~ 253 (1096)
.+++|.+..+ ..+...+... ..+.+.|+|++|+||||+|+.+.+.... . ++.++... .... .+.
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~-----~~~~vLL~GppGtGKTtlAr~ia~~~~~-~-----f~~l~a~~~~~~~-ir~ 93 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG-----HLHSMILWGPPGTGKTTLAEVIARYANA-D-----VERISAVTSGVKE-IRE 93 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT-----CCCEEEEECSTTSSHHHHHHHHHHHTTC-E-----EEEEETTTCCHHH-HHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC-----CCcEEEEECCCCCcHHHHHHHHHHHhCC-C-----eEEEEeccCCHHH-HHH
Confidence 4688998887 6677777443 2467899999999999999999975322 1 22222211 1111 111
Q ss_pred HHHhccCCCCCCCcHHHHHHHHH-HHhCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEE-EEcCchhh--h-hhc
Q 043647 254 ILESITFSPNSLKDLNQIQVQLR-EAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKIL-VTTCSTDV--A-LTV 328 (1096)
Q Consensus 254 i~~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii-vTtR~~~v--~-~~~ 328 (1096)
...... ....+++.+|++|+++.-.....+.+...+..+ ...+| .||.+... . ...
T Consensus 94 -----------------~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 94 -----------------AIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSALL 154 (447)
T ss_dssp -----------------HHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHHH
T ss_pred -----------------HHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHHh
Confidence 111111 122577899999999776544555555555432 22333 35555431 1 111
Q ss_pred CCcceeeCCCCChHhHHHHHHHhhcCCCCC---CCCcchhHHHHHHHHHhCCCchhHHH
Q 043647 329 GTAEYYNLKLLSDDDCWSVFVKHAFEKRDV---GLHRHMGSIRKKVVQKCRGLPLAAET 384 (1096)
Q Consensus 329 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~---~~~~~~~~~~~~i~~~~~g~PLai~~ 384 (1096)
....++.+++++.++..+++.+.+-..... ....-..+....|++.++|.+-.+..
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALN 213 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHH
Confidence 233578899999999999998876431100 11122345667888889998765543
No 175
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.08 E-value=3.4e-05 Score=81.72 Aligned_cols=181 Identities=15% Similarity=0.141 Sum_probs=95.9
Q ss_pred CccccchHHHHHHHHHH---hcCCC----CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHH
Q 043647 178 PAVFGRDEDKAKILEMV---LRDEP----TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L---~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 250 (1096)
.+++|.++.++++.+++ ...+. +....+.+.|+|++|+|||++|+.+++.... ..+.+.++.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~----~~~~~~~~~~~~~--- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV----PFLAMAGAEFVEV--- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC----CEEEEETTTTSSS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC----CEEEechHHHHhh---
Confidence 45889988777776544 22111 1123456889999999999999999875322 1233333321110
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCC------------h---hhHHHhhcccCC--CCCCc
Q 043647 251 TKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKN------------Y---SLWNTLKSPFRA--GASGS 313 (1096)
Q Consensus 251 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~---~~~~~l~~~l~~--~~~gs 313 (1096)
........+...+.......+.+|+||+++.-. . .....+...+.. ...+.
T Consensus 79 ------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 146 (262)
T 2qz4_A 79 ------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHV 146 (262)
T ss_dssp ------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCE
T ss_pred ------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCE
Confidence 000111222233333334567899999996531 0 112223322222 12345
Q ss_pred EEEEEcCchhhh-hhc-C---CcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCch
Q 043647 314 KILVTTCSTDVA-LTV-G---TAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPL 380 (1096)
Q Consensus 314 ~iivTtR~~~v~-~~~-~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL 380 (1096)
.||.||...... ... . -...+.++..+.++..+++...+.... . ..........+++.+.|.+-
T Consensus 147 ~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~-~--~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 147 IVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK-L--TQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp EEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT-C--CBTHHHHHHHHHHTCTTCCH
T ss_pred EEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC-C--CcchhhHHHHHHHHCCCCCH
Confidence 677777654321 111 1 124678899999999999988763221 1 11122234678888888754
No 176
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.06 E-value=0.00029 Score=79.50 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=30.2
Q ss_pred cCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeecc
Q 043647 992 GLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRD 1058 (1096)
Q Consensus 992 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~ 1058 (1096)
.|.++++|+++.|..+ ++.+... +|..+++|+++.|-. +++.|....|.++++|+.+++.+
T Consensus 306 aF~~c~~L~~i~lp~~--v~~I~~~--aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEG--ITQILDD--AFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTT--TTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred eecCCCCcCEEEeCCc--ccEehHh--HhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 4555555555555432 4444432 244455555555532 25555544555555555555543
No 177
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.04 E-value=5.3e-05 Score=81.30 Aligned_cols=182 Identities=13% Similarity=0.073 Sum_probs=99.0
Q ss_pred CccccchHHHHHHHHHHhcCCC--------CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEP--------TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILR 249 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~--------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~ 249 (1096)
.+++|.++.++++.+.+..... +....+.+.|+|++|+|||++|+++++..... .+.+..+.-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~----~~~v~~~~~~~--- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT----FIRVVGSELVK--- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE----EEEEEGGGGCC---
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC----EEEEehHHHHH---
Confidence 4689999999999887743100 01234568999999999999999998753221 12222211100
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCC-----------Chh---hHHHhhcccC--CCCCCc
Q 043647 250 ITKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSK-----------NYS---LWNTLKSPFR--AGASGS 313 (1096)
Q Consensus 250 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~---~~~~l~~~l~--~~~~gs 313 (1096)
. ........+...+......++.+|+||+++.. ... .+..+...+. ....+.
T Consensus 90 -----------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 157 (285)
T 3h4m_A 90 -----------K-FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDV 157 (285)
T ss_dssp -----------C-STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSE
T ss_pred -----------h-ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCE
Confidence 0 00011112222233333456789999999531 101 1122222221 122356
Q ss_pred EEEEEcCchhhhhh-c----CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCC-chhHH
Q 043647 314 KILVTTCSTDVALT-V----GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGL-PLAAE 383 (1096)
Q Consensus 314 ~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~ 383 (1096)
.||.||........ . .-...+.++..+.++..+++...+.... ..... ....+++.+.|. |-.+.
T Consensus 158 ~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~-~~~~~----~~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 158 KIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN-LAEDV----NLEEIAKMTEGCVGAELK 228 (285)
T ss_dssp EEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSC-BCTTC----CHHHHHHHCTTCCHHHHH
T ss_pred EEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCC-CCCcC----CHHHHHHHcCCCCHHHHH
Confidence 77888875532211 0 1124688999999999999988874322 11111 235667777764 43333
No 178
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.03 E-value=0.00011 Score=80.55 Aligned_cols=182 Identities=11% Similarity=0.068 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh------
Q 043647 184 DEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES------ 257 (1096)
Q Consensus 184 ~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~------ 257 (1096)
++..+.+...+..+. -.+.+.++|+.|+|||++|+.+.+......... + .+...-...+.+...
T Consensus 8 ~~~~~~l~~~i~~~~----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~--~----~~c~~c~~c~~~~~~~~~d~~ 77 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR----GHHALLIQALPGMGDDALIYALSRYLLCQQPQG--H----KSCGHCRGCQLMQAGTHPDYY 77 (334)
T ss_dssp HHHHHHHHHHHHTTC----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT--T----BCCSCSHHHHHHHHTCCTTEE
T ss_pred HHHHHHHHHHHHcCC----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCC--C----CCCCCCHHHHHHhcCCCCCEE
Confidence 455666777664332 245789999999999999998876532211000 0 000000001111110
Q ss_pred -ccCCC-CCCCcHHHHHHHHHHHh-----CCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchh-hhhhc-
Q 043647 258 -ITFSP-NSLKDLNQIQVQLREAV-----AGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTD-VALTV- 328 (1096)
Q Consensus 258 -l~~~~-~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~- 328 (1096)
+.... ......+++.. +.+.+ .+++-++|+|+++.-.....+.+...+.....++.+|++|.+++ +...+
T Consensus 78 ~~~~~~~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~ 156 (334)
T 1a5t_A 78 TLAPEKGKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLR 156 (334)
T ss_dssp EECCCTTCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHH
T ss_pred EEeccccCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHh
Confidence 00000 01122333332 22222 35678999999987665666667666655555677777776553 22211
Q ss_pred CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHHH
Q 043647 329 GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAETL 385 (1096)
Q Consensus 329 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 385 (1096)
.....+.+.+++.++..+.+.... . -..+.+..+++.++|.|..+..+
T Consensus 157 SRc~~~~~~~~~~~~~~~~L~~~~----~-----~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 157 SRCRLHYLAPPPEQYAVTWLSREV----T-----MSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHC----C-----CCHHHHHHHHHHTTTCHHHHHHT
T ss_pred hcceeeeCCCCCHHHHHHHHHHhc----C-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 233579999999999999887765 1 11245577899999999766543
No 179
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.02 E-value=1.4e-05 Score=90.97 Aligned_cols=161 Identities=16% Similarity=0.104 Sum_probs=95.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccc-cCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCC
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEM-FNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGK 282 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 282 (1096)
...+.|+|++|+||||||+.+++.....+ -..++++++. .+..++...+... .. ..+.+.++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~~~ 194 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KL----NEFREKYRKK 194 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----CH----HHHHHHHTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----cH----HHHHHHhcCC
Confidence 56789999999999999999998542221 1124455432 3334444443321 11 1233444446
Q ss_pred cEEEEEecCCCCCh--hhHHHhhcccCC-CCCCcEEEEEcCch---------hhhhhcCCcceeeCCCCChHhHHHHHHH
Q 043647 283 RFLIVLDDVWSKNY--SLWNTLKSPFRA-GASGSKILVTTCST---------DVALTVGTAEYYNLKLLSDDDCWSVFVK 350 (1096)
Q Consensus 283 r~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 350 (1096)
.-+|++||++.... ...+.+...+.. ...|..||+||... .+...+.....+.+++++.++..+++.+
T Consensus 195 ~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~ 274 (440)
T 2z4s_A 195 VDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARK 274 (440)
T ss_dssp CSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHH
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 77999999965432 222333333221 23467888888753 2222233345788999999999999988
Q ss_pred hhcCCCCCCCCcchhHHHHHHHHHhCCCchhHH
Q 043647 351 HAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAE 383 (1096)
Q Consensus 351 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 383 (1096)
.+...+ ... ..++...|++.+.|.+-.+.
T Consensus 275 ~~~~~~-~~i---~~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 275 MLEIEH-GEL---PEEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHT-CCC---CTTHHHHHHHHCCSCHHHHH
T ss_pred HHHHcC-CCC---CHHHHHHHHHhcCCCHHHHH
Confidence 773211 111 12456678888888875544
No 180
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.99 E-value=1.1e-05 Score=89.99 Aligned_cols=195 Identities=11% Similarity=0.109 Sum_probs=104.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccc----c-ccCcEEE--------------
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAV----E-MFNLRSW-------------- 238 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~-~f~~~~w-------------- 238 (1096)
.+++|.++.++.+.+++.... .... +.|+|+.|+||||+|+.++..... . .++...|
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~---~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 89 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR---DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVS 89 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT---CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEE
T ss_pred HHhcCCHHHHHHHHHHHhhCC---CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeec
Confidence 458899998888887762221 1223 899999999999999888763211 0 1111111
Q ss_pred ----EEec--Ccc-ChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCCCC
Q 043647 239 ----VCVS--DDF-DILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGAS 311 (1096)
Q Consensus 239 ----v~~~--~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 311 (1096)
+.+. ... ......++++..+..... ..... .+. .+.+++-++|+|++..-+....+.+...+.....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~ 163 (354)
T 1sxj_E 90 SPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKYSK 163 (354)
T ss_dssp CSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTT
T ss_pred ccceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcC
Confidence 1110 000 000011112211110000 00000 000 0134677999999987665556666665544445
Q ss_pred CcEEEEEcCchh-hhhhc-CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcch-hHHHHHHHHHhCCCchhHHHHH
Q 043647 312 GSKILVTTCSTD-VALTV-GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHM-GSIRKKVVQKCRGLPLAAETLG 386 (1096)
Q Consensus 312 gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~-~~~~~~i~~~~~g~PLai~~~~ 386 (1096)
+..+|++|.... +...+ .....+++.+++.++..+.+...+...+ . .-. .+....|++.++|.+-.+..+.
T Consensus 164 ~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~-~---~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 164 NIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNER-I---QLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-C---EECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcC-C---CCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 677888776542 21111 2236789999999999999887763211 1 111 3566789999999886655443
No 181
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.97 E-value=2.2e-06 Score=82.38 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=12.0
Q ss_pred CCCCCCcceEEEcCCCCccc
Q 043647 993 LHKLTSLKILCVIGCPDAVS 1012 (1096)
Q Consensus 993 l~~l~~L~~L~l~~c~~l~~ 1012 (1096)
+.++++|++|+|++|+.+++
T Consensus 135 L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGGCTTCCEEEEESCTTCCC
T ss_pred HhcCCCCCEEECCCCCCCCc
Confidence 34556666666666665554
No 182
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.94 E-value=0.00018 Score=76.52 Aligned_cols=172 Identities=13% Similarity=0.162 Sum_probs=91.5
Q ss_pred CccccchHHHHHHHH-------HHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHH
Q 043647 178 PAVFGRDEDKAKILE-------MVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~-------~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 250 (1096)
..++|.....++++. .+... .....+.+.|+|++|+|||++|+++++.... . .+.+..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~--~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~---~-~~~i~~~~~------ 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNS--DRTPLVSVLLEGPPHSGKTALAAKIAEESNF---P-FIKICSPDK------ 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHC--SSCSEEEEEEECSTTSSHHHHHHHHHHHHTC---S-EEEEECGGG------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhcc--CCCCCeEEEEECCCCCcHHHHHHHHHHHhCC---C-EEEEeCHHH------
Confidence 357788777666665 23211 1234678999999999999999999875321 1 122222211
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCC----------ChhhHHHhhcccCC---CCCCcEEEE
Q 043647 251 TKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSK----------NYSLWNTLKSPFRA---GASGSKILV 317 (1096)
Q Consensus 251 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------~~~~~~~l~~~l~~---~~~gs~iiv 317 (1096)
+.+. ........+...+......+..+|+||+++.- .....+.+...+.. ......||.
T Consensus 101 -------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ 172 (272)
T 1d2n_A 101 -------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIG 172 (272)
T ss_dssp -------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEE
T ss_pred -------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEE
Confidence 1100 00001122233334444567899999998531 11112223332221 223345677
Q ss_pred EcCchhhhhhc---CC-cceeeCCCCCh-HhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCC
Q 043647 318 TTCSTDVALTV---GT-AEYYNLKLLSD-DDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGL 378 (1096)
Q Consensus 318 TtR~~~v~~~~---~~-~~~~~l~~L~~-~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 378 (1096)
||......... .. ...+.+++++. ++..+++.... .. ..+....|++.+.|.
T Consensus 173 ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~~-----~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 173 TTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----NF-----KDKERTTIAQQVKGK 229 (272)
T ss_dssp EESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----CS-----CHHHHHHHHHHHTTS
T ss_pred ecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----CC-----CHHHHHHHHHHhcCC
Confidence 77766543321 11 34688899988 55555554421 11 134567788888884
No 183
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.93 E-value=5.4e-05 Score=82.35 Aligned_cols=159 Identities=13% Similarity=0.070 Sum_probs=89.6
Q ss_pred ccccchHHHHHHHHHHhcC----------CCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccCh
Q 043647 179 AVFGRDEDKAKILEMVLRD----------EPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDI 247 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~----------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~ 247 (1096)
+++|.+..++.+.+++... -........+.|+|++|+|||++|+.+++..... .....-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 4788888887777655311 0011234578999999999999999888754322 1111123333211
Q ss_pred HHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCC---------ChhhHHHhhcccCCCCCCcEEEEE
Q 043647 248 LRITKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSK---------NYSLWNTLKSPFRAGASGSKILVT 318 (1096)
Q Consensus 248 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivT 318 (1096)
.+... ............+... +..+|++|+++.- .......+...+.....+..||.|
T Consensus 109 ---------~l~~~-~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQ-YIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCS-STTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhh-cccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 11100 0011112222222222 3459999999733 334455566555555556788888
Q ss_pred cCchhhhhh--cC------CcceeeCCCCChHhHHHHHHHhhc
Q 043647 319 TCSTDVALT--VG------TAEYYNLKLLSDDDCWSVFVKHAF 353 (1096)
Q Consensus 319 tR~~~v~~~--~~------~~~~~~l~~L~~~~~~~lf~~~a~ 353 (1096)
|........ .. ....+.+++++.++-.+++...+-
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 865432111 01 125788999999999999987763
No 184
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.90 E-value=0.00011 Score=80.49 Aligned_cols=173 Identities=17% Similarity=0.131 Sum_probs=100.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
.+++|.++.++.+.+++.... ...++.+.|++|+|||++|+.+.+.... ..+.++.+.. ..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~----~~~~~L~~G~~G~GKT~la~~la~~l~~----~~~~i~~~~~-~~---------- 86 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK----IPHIILHSPSPGTGKTTVAKALCHDVNA----DMMFVNGSDC-KI---------- 86 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC----CCSEEEECSSTTSSHHHHHHHHHHHTTE----EEEEEETTTC-CH----------
T ss_pred HHHhCcHHHHHHHHHHHHcCC----CCeEEEeeCcCCCCHHHHHHHHHHHhCC----CEEEEccccc-CH----------
Confidence 468999999999999986432 2457788888999999999999875421 1233443221 11
Q ss_pred ccCCCCCCCcHHHHHHHHHHHh-----CCCcEEEEEecCCCCC-hhhHHHhhcccCCCCCCcEEEEEcCchhh-hhhc-C
Q 043647 258 ITFSPNSLKDLNQIQVQLREAV-----AGKRFLIVLDDVWSKN-YSLWNTLKSPFRAGASGSKILVTTCSTDV-ALTV-G 329 (1096)
Q Consensus 258 l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~~~-~ 329 (1096)
+.+...+.+.. .+++.++++|+++.-. ....+.+...+.....+.++|+||....- ...+ .
T Consensus 87 -----------~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s 155 (324)
T 3u61_B 87 -----------DFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS 155 (324)
T ss_dssp -----------HHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH
T ss_pred -----------HHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh
Confidence 11122222211 2478899999997654 34455555444333345678888765431 1100 1
Q ss_pred CcceeeCCCCChHhHHHH-------HHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHH
Q 043647 330 TAEYYNLKLLSDDDCWSV-------FVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAE 383 (1096)
Q Consensus 330 ~~~~~~l~~L~~~~~~~l-------f~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 383 (1096)
....+.+++++.++-.++ +...+... ....++ .+....|++.++|.+-.+.
T Consensus 156 R~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~-~~~~~~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 156 RCRVITFGQPTDEDKIEMMKQMIRRLTEICKHE-GIAIAD--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH-TCCBSC--HHHHHHHHHHTCSCTTHHH
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHc-CCCCCc--HHHHHHHHHhCCCCHHHHH
Confidence 124689999998874333 22222111 111111 2667788888988776444
No 185
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.90 E-value=1.1e-05 Score=89.13 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=38.6
Q ss_pred CCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcc-----cCcCCCCCCCCcCeEeeccC
Q 043647 995 KLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKY-----LSSNGFRNLAFLEYLQIRDC 1059 (1096)
Q Consensus 995 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~-----l~~~~l~~l~~L~~L~l~~c 1059 (1096)
.+++|+.|++++|......+........+++|++|+|+. +.++. ++ .++..+++|+.|+|++|
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~-~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLL-DHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHH-TTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHH-hhcccCCcceEEECCCC
Confidence 578888888888833221221111113467888888876 55665 33 34456788888888875
No 186
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.89 E-value=1e-05 Score=89.33 Aligned_cols=135 Identities=21% Similarity=0.083 Sum_probs=75.8
Q ss_pred ccccccccEEEEecCCCcCccCCCCCCCccEEEEecccCcccc-----CCCCCCcceEEeccCCCc--cccCCCCccccc
Q 043647 812 VERFACLRQLSIVKCPRLCGRLPNHLPILEKLMIYECVQLVVS-----FSSLPLLCKLEIDRCKGV--ACRSPADLMSIN 884 (1096)
Q Consensus 812 ~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~-----~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~ 884 (1096)
...+|+|+.|.|++|..+. ..+-..++|+.|.+..|...... ...+|+|+.|+|+.+... .......+...
T Consensus 168 l~~~P~L~~L~L~g~~~l~-l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~- 245 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLS-IGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL- 245 (362)
T ss_dssp HHTCTTCCEEEEECCBTCB-CCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG-
T ss_pred HhcCCCCcEEEEeCCCCce-eccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH-
Confidence 3467888888888774432 22223678888888766532221 235788888888642111 00000011110
Q ss_pred CCCCCCCCCccEEEEccCCCcccchhhc---CCCCCcCeEEEecCCCcCc-----CCCCCCCCCCcCeEEEeCC
Q 043647 885 SDSFKYFRALQQLEILDCPKLESIAERF---HNNTSLGCIWIWKCENLKS-----LPEGLPNLNSLHNIYVWDC 950 (1096)
Q Consensus 885 ~~~l~~l~~L~~L~L~~~~~l~~l~~~~---~~l~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~c 950 (1096)
-....||+|+.|.+.+|......+..+ ..+++|++|+++.| .++. ++.++.++++|+.|++++|
T Consensus 246 -l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 246 -FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp -SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred -HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC
Confidence 111357888888888876443222222 35677888888764 4443 3445556777777777765
No 187
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.88 E-value=0.0016 Score=73.22 Aligned_cols=104 Identities=14% Similarity=0.195 Sum_probs=52.9
Q ss_pred hcCCCCCcCeEEEecCCCcCcCC-CCCCCCCCcCeEEEeCCCCCcccCCCCCC--CCcCeEEEccCcCCcCCCCCCCCCC
Q 043647 911 RFHNNTSLGCIWIWKCENLKSLP-EGLPNLNSLHNIYVWDCPSLVSFPEGGLP--NCSLSVTIGKCEKLKALPNLNAYES 987 (1096)
Q Consensus 911 ~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~--~~L~~L~l~~c~~l~~l~~l~~~~~ 987 (1096)
.|.+++.|+.+.+.+ .+..++ ..+.++++|+.+.+. ..++.++...+. .+|+.+.|.+ +++.+.
T Consensus 260 aF~~c~~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~------- 326 (394)
T 4gt6_A 260 AFDSCAYLASVKMPD--SVVSIGTGAFMNCPALQDIEFS--SRITELPESVFAGCISLKSIDIPE--GITQIL------- 326 (394)
T ss_dssp TTTTCSSCCEEECCT--TCCEECTTTTTTCTTCCEEECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEEC-------
T ss_pred eeeecccccEEeccc--ccceecCcccccccccccccCC--CcccccCceeecCCCCcCEEEeCC--cccEeh-------
Confidence 345566666666543 222332 334556666666654 345555544443 4555555542 233322
Q ss_pred CCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEecc
Q 043647 988 PIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVR 1033 (1096)
Q Consensus 988 ~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~ 1033 (1096)
...|.++++|+++.|..+ +..+... +|..+++|+.+++.+
T Consensus 327 --~~aF~~C~~L~~i~ip~s--v~~I~~~--aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 327 --DDAFAGCEQLERIAIPSS--VTKIPES--AFSNCTALNNIEYSG 366 (394)
T ss_dssp --TTTTTTCTTCCEEEECTT--CCBCCGG--GGTTCTTCCEEEESS
T ss_pred --HhHhhCCCCCCEEEECcc--cCEEhHh--HhhCCCCCCEEEECC
Confidence 135666666666666432 5555543 345566666666655
No 188
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.85 E-value=3.2e-05 Score=73.15 Aligned_cols=114 Identities=13% Similarity=-0.041 Sum_probs=68.5
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhc
Q 043647 179 AVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESI 258 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 258 (1096)
+++|+...+.++.+.+..-.. ...-|.|+|.+|+|||++|+.+++.........+ +.++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~---~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v--~~~~~~~~~----------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE---TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV--YRELTPDNA----------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT---CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE--EEECCTTTS-----------
T ss_pred CceeCCHHHHHHHHHHHHHhC---CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE--EECCCCCcc-----------
Confidence 578999999999887743221 1234789999999999999999875332222222 555443221
Q ss_pred cCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCc
Q 043647 259 TFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCS 321 (1096)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 321 (1096)
.... ..+... +.-.|+||+++.-.......+...+.......+||.||..
T Consensus 66 -------~~~~---~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 -------PQLN---DFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp -------SCHH---HHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred -------hhhh---cHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 1111 111111 2346899999877665566666655444445677777754
No 189
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.84 E-value=0.00068 Score=73.61 Aligned_cols=186 Identities=15% Similarity=0.078 Sum_probs=99.0
Q ss_pred CccccchHHHHHHHHHHhcC----C---CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRD----E---PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~----~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 250 (1096)
.+++|.++.++.+.+.+... + ......+-|.++|++|+|||++|+++++...... .+.+..+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~---~~~i~~~~l~----- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNST---FFSISSSDLV----- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCE---EEEEECCSSC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCc---EEEEEhHHHH-----
Confidence 46889998888887766310 0 0112346789999999999999999998541111 1223322111
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCC-------hhh----HHHhhcccCC---CCCCcEEE
Q 043647 251 TKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKN-------YSL----WNTLKSPFRA---GASGSKIL 316 (1096)
Q Consensus 251 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------~~~----~~~l~~~l~~---~~~gs~ii 316 (1096)
.. ........+...+...-..++.+|+||+++... ... ...+...+.. ...+..||
T Consensus 84 ---------~~-~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI 153 (322)
T 1xwi_A 84 ---------SK-WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVL 153 (322)
T ss_dssp ---------CS-SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEE
T ss_pred ---------hh-hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEE
Confidence 00 011112222222222334678899999996420 011 1122222221 12344566
Q ss_pred EEcCchhhhh-hc--CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCc-hhHHHH
Q 043647 317 VTTCSTDVAL-TV--GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLP-LAAETL 385 (1096)
Q Consensus 317 vTtR~~~v~~-~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~ 385 (1096)
.||..+.... .+ .-...+.++..+.++..+++..++.... . .-.......|++.+.|.. -.|..+
T Consensus 154 ~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-~---~l~~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 154 GATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQ-N---SLTEADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp EEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCC-B---CCCHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCC-C---CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 5665432111 00 2234678888899998999988763211 1 112345577888888874 334433
No 190
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.80 E-value=0.0003 Score=76.71 Aligned_cols=182 Identities=15% Similarity=0.056 Sum_probs=99.8
Q ss_pred CccccchHHHHHHHHHHhcC-------CCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRD-------EPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~-------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 250 (1096)
.+++|.++.++++.+.+... .......+-|.++|++|+|||++|+++++.... . .+.|+++ ++
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-~---~~~v~~~------~l 87 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS-T---FFSVSSS------DL 87 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC-E---EEEEEHH------HH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC-C---EEEEchH------HH
Confidence 46899999999988877210 111223467899999999999999999875322 1 1223221 11
Q ss_pred HHHHHHhccCCCCCCCcHHHHH-HHHHHHhCCCcEEEEEecCCCCCh-----------hhHHHhhcccC---CCCCCcEE
Q 043647 251 TKSILESITFSPNSLKDLNQIQ-VQLREAVAGKRFLIVLDDVWSKNY-----------SLWNTLKSPFR---AGASGSKI 315 (1096)
Q Consensus 251 ~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~---~~~~gs~i 315 (1096)
..... ...+... ..+...-..++.+|+||+++.-.. .....+...+. ....+..|
T Consensus 88 ----~~~~~------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 157 (322)
T 3eie_A 88 ----VSKWM------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 157 (322)
T ss_dssp ----HTTTG------GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEE
T ss_pred ----hhccc------chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEE
Confidence 11100 1112222 222222345678999999964211 11223332222 22345566
Q ss_pred EEEcCchhhhhh-c--CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCC-chhHH
Q 043647 316 LVTTCSTDVALT-V--GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGL-PLAAE 383 (1096)
Q Consensus 316 ivTtR~~~v~~~-~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~ 383 (1096)
|.||..+..... + .-...+.+...+.++-.+++..++..... .........|++.+.|. +-.|.
T Consensus 158 i~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~----~~~~~~l~~la~~t~g~sg~di~ 225 (322)
T 3eie_A 158 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC----VLTKEDYRTLGAMTEGYSGSDIA 225 (322)
T ss_dssp EEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC----CCCHHHHHHHHHTTTTCCHHHHH
T ss_pred EEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC----CCCHHHHHHHHHHcCCCCHHHHH
Confidence 667765432110 0 12246778889999999999888743211 11123456788888774 43343
No 191
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.78 E-value=0.00017 Score=79.55 Aligned_cols=176 Identities=13% Similarity=0.161 Sum_probs=103.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccC-cEEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFN-LRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.+++|.+..++.+..++... +.+.+.++|+.|+||||+|+.++.......+. .+..++.+....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g-----~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~---------- 89 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG-----KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRG---------- 89 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT-----CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCS----------
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccccc----------
Confidence 35789888888888887543 22338999999999999999988753221111 111222221111
Q ss_pred hccCCCCCCCcHHHHHHHHHHHh------CCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchh-hhhhc-
Q 043647 257 SITFSPNSLKDLNQIQVQLREAV------AGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTD-VALTV- 328 (1096)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~l~~~l------~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~- 328 (1096)
.+.+...+.... .+.+-++|+|+++.-.....+.+...+......+++|++|.... +...+
T Consensus 90 -----------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~ 158 (340)
T 1sxj_C 90 -----------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALL 158 (340)
T ss_dssp -----------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred -----------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHH
Confidence 222222222221 23477899999976555555556555544445567777765432 11111
Q ss_pred CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHH
Q 043647 329 GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAE 383 (1096)
Q Consensus 329 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 383 (1096)
.....+.+.+++.++..+.+...+-..+ .. -..+..+.|++.++|.+--+.
T Consensus 159 sR~~~~~~~~l~~~~~~~~l~~~~~~~~-~~---i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 159 SQCTRFRFQPLPQEAIERRIANVLVHEK-LK---LSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHTTT-CC---BCHHHHHHHHHHHTTCHHHHH
T ss_pred hhceeEeccCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHH
Confidence 2224688999999998888876652211 11 123456788899999876443
No 192
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.74 E-value=0.00068 Score=74.73 Aligned_cols=185 Identities=15% Similarity=0.052 Sum_probs=98.6
Q ss_pred CccccchHHHHHHHHHHhcC----C---CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRD----E---PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~----~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 250 (1096)
.+++|.++.++.+.+.+... . ......+-|.|+|++|+|||++|+++++..... .+.+.++ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~v~~~------~- 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST----FFSVSSS------D- 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE----EEEEEHH------H-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC----EEEeeHH------H-
Confidence 46899999998888776311 0 011223458899999999999999999854221 1222221 1
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChh-----------hHHHhhcccC---CCCCCcEEE
Q 043647 251 TKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYS-----------LWNTLKSPFR---AGASGSKIL 316 (1096)
Q Consensus 251 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-----------~~~~l~~~l~---~~~~gs~ii 316 (1096)
+..... ......+...+...-..++.+|+||+++..... ....+...+. ....+..||
T Consensus 120 ---l~~~~~-----g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI 191 (355)
T 2qp9_X 120 ---LVSKWM-----GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVL 191 (355)
T ss_dssp ---HHSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEE
T ss_pred ---Hhhhhc-----chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEE
Confidence 111111 011122222222233467899999999643210 1222322222 112345666
Q ss_pred EEcCchhhhh-hc--CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCC-chhHHHH
Q 043647 317 VTTCSTDVAL-TV--GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGL-PLAAETL 385 (1096)
Q Consensus 317 vTtR~~~v~~-~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~ 385 (1096)
.||....... .+ .-...+.+...+.++-.+++..++.... .. --......|++.+.|. +-.|..+
T Consensus 192 ~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-~~---~~~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 192 GATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP-SV---LTKEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp EEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSC-BC---CCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred eecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCC-CC---CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 6666442111 00 2235678888999999999988773221 11 1133456788888884 4334433
No 193
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.73 E-value=0.0031 Score=70.56 Aligned_cols=138 Identities=14% Similarity=0.133 Sum_probs=88.5
Q ss_pred hcCCCCCcCeEEEecCCCcCcCC-CCCCCCCCcCeEEEeCCCCCcccCCCCCC--CCcCeEEEccCcCCcCCCCCCCCCC
Q 043647 911 RFHNNTSLGCIWIWKCENLKSLP-EGLPNLNSLHNIYVWDCPSLVSFPEGGLP--NCSLSVTIGKCEKLKALPNLNAYES 987 (1096)
Q Consensus 911 ~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~--~~L~~L~l~~c~~l~~l~~l~~~~~ 987 (1096)
.+..+.+|+.+.+.. .+..++ ..+.++.+|+.+.+.. .++.+....+. .+|+.+.+.. +++.++.
T Consensus 212 ~f~~~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~------ 279 (379)
T 4h09_A 212 GFSYGKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYA--KVKTVPY------ 279 (379)
T ss_dssp TTTTCSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECC--CCSEECT------
T ss_pred ccccccccceeeecc--ceeEEccccccCCccceEEEcCC--CccEeCccccceeehhccccccc--cceeccc------
Confidence 345566666666643 234443 3455667777777754 35555544333 4566666543 3333321
Q ss_pred CCcccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCCC
Q 043647 988 PIDWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFPE 1067 (1096)
Q Consensus 988 ~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~ 1067 (1096)
..+.++++|+.+.+.++ .++.++.. +|..+++|+.+.|.. +++.|....|.++++|+++.+.. .++.+..
T Consensus 280 ---~aF~~c~~L~~i~l~~~-~i~~I~~~--aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~ 349 (379)
T 4h09_A 280 ---LLCSGCSNLTKVVMDNS-AIETLEPR--VFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIES 349 (379)
T ss_dssp ---TTTTTCTTCCEEEECCT-TCCEECTT--TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECT
T ss_pred ---ccccccccccccccccc-ccceehhh--hhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEch
Confidence 36788889999988876 67777764 467788899998864 48888878888888999888854 3566555
Q ss_pred CCc
Q 043647 1068 AGL 1070 (1096)
Q Consensus 1068 ~~l 1070 (1096)
..+
T Consensus 350 ~aF 352 (379)
T 4h09_A 350 GAF 352 (379)
T ss_dssp TTT
T ss_pred hHh
Confidence 433
No 194
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.73 E-value=2.6e-05 Score=77.65 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=38.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
..++||+++++++.+.+... ..+.+.|+|++|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~-----~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR-----TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS-----SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC-----CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35899999999999998542 24567899999999999999988754
No 195
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.67 E-value=5.6e-05 Score=74.67 Aligned_cols=120 Identities=18% Similarity=0.156 Sum_probs=62.7
Q ss_pred chHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHHHHHhccCC
Q 043647 183 RDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKSILESITFS 261 (1096)
Q Consensus 183 r~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 261 (1096)
+.+.++.+.+++..-.. .....+.|+|+.|+||||||+.+++..... .+ .+++++ ..++...+.......
T Consensus 19 ~~~~~~~~~~~~~~~~~--~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~~ 89 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP--EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDEG 89 (180)
T ss_dssp HHHHHHHHHHHHHSCCG--GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccc--cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcCc
Confidence 34444555555532211 124689999999999999999998765322 22 223333 344444444333221
Q ss_pred CCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHH--HhhcccCC-CCCCcEEEEEcCc
Q 043647 262 PNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWN--TLKSPFRA-GASGSKILVTTCS 321 (1096)
Q Consensus 262 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~iivTtR~ 321 (1096)
... .... .+. +.-+|||||++......|. .+...+.. ...|..||+||..
T Consensus 90 ~~~-----~~~~----~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 90 KDT-----KFLK----TVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp CCS-----HHHH----HHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred hHH-----HHHH----Hhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 111 1111 121 4568999999743223333 22222221 1246788888864
No 196
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.66 E-value=0.00054 Score=75.75 Aligned_cols=184 Identities=12% Similarity=0.076 Sum_probs=99.4
Q ss_pred CccccchHHHHHHHHHHhc----CCC---CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHH
Q 043647 178 PAVFGRDEDKAKILEMVLR----DEP---TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~----~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 250 (1096)
.+++|.+..++++.+.+.. .+. .....+.|.|+|++|+|||++|+++++.... ..+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~----~~~~i~~~~l~~---- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA----TFFSISASSLTS---- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC----EEEEEEGGGGCC----
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC----eEEEEehHHhhc----
Confidence 4689999999998887642 100 0123567899999999999999999875321 123344332111
Q ss_pred HHHHHHhccCCCCCCCcHHHHH-HHHHHHhCCCcEEEEEecCCCCC-----------hhhHHHhhcccCC----CCCCcE
Q 043647 251 TKSILESITFSPNSLKDLNQIQ-VQLREAVAGKRFLIVLDDVWSKN-----------YSLWNTLKSPFRA----GASGSK 314 (1096)
Q Consensus 251 ~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~----~~~gs~ 314 (1096)
. . ........ ..+...-..++.+|+||+++.-. ......+...+.. ...+..
T Consensus 156 ----------~-~-~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 156 ----------K-W-VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp ----------S-S-TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred ----------c-c-cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 0 0 01111111 22222223567899999994210 0112233333321 122345
Q ss_pred EEEEcCchh-hhhhc--CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCC-chhHHHH
Q 043647 315 ILVTTCSTD-VALTV--GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGL-PLAAETL 385 (1096)
Q Consensus 315 iivTtR~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~ 385 (1096)
||.||.... +...+ .-...+.+...+.++..+++...+-... . .-..+....|++.+.|. +-.|..+
T Consensus 224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~-~---~l~~~~l~~la~~t~G~s~~dl~~l 294 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQ-C---CLSEEEIEQIVQQSDAFSGADMTQL 294 (357)
T ss_dssp EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSC-B---CCCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcC-C---CccHHHHHHHHHHcCCCCHHHHHHH
Confidence 565665432 11111 1224678888899998888887763211 1 11234567788888884 4445444
No 197
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.64 E-value=0.00034 Score=76.51 Aligned_cols=154 Identities=14% Similarity=0.120 Sum_probs=85.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGKR 283 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 283 (1096)
...+.|+|++|+||||||+.+++...... ..++++++ .++...+...+... .... +.+.. .+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~-~~~~~i~~------~~~~~~~~~~~~~~-----~~~~----~~~~~-~~~ 99 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRG-YRVIYSSA------DDFAQAMVEHLKKG-----TINE----FRNMY-KSV 99 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTT-CCEEEEEH------HHHHHHHHHHHHHT-----CHHH----HHHHH-HTC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCC-CEEEEEEH------HHHHHHHHHHHHcC-----cHHH----HHHHh-cCC
Confidence 45689999999999999999997542211 12345543 22333333333211 1111 22222 236
Q ss_pred EEEEEecCCCCCh--hhHHHhhcccCC-CCCCcEEEEEcCchh---------hhhhcCCcceeeCCCCChHhHHHHHHHh
Q 043647 284 FLIVLDDVWSKNY--SLWNTLKSPFRA-GASGSKILVTTCSTD---------VALTVGTAEYYNLKLLSDDDCWSVFVKH 351 (1096)
Q Consensus 284 ~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 351 (1096)
.+|++||+..... ...+.+...+.. ...|..||+||.... +...+.....+.+++ +.++..+++...
T Consensus 100 ~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~ 178 (324)
T 1l8q_A 100 DLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEK 178 (324)
T ss_dssp SEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHH
T ss_pred CEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHH
Confidence 7999999965432 122233333221 123557888775331 222223335689999 999999999887
Q ss_pred hcCCCCCCCCcchhHHHHHHHHHhCCCch
Q 043647 352 AFEKRDVGLHRHMGSIRKKVVQKCRGLPL 380 (1096)
Q Consensus 352 a~~~~~~~~~~~~~~~~~~i~~~~~g~PL 380 (1096)
+...+ .. -..++...|++.+ |..-
T Consensus 179 ~~~~~-~~---l~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 179 LKEFN-LE---LRKEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHTT-CC---CCHHHHHHHHHHC-SSHH
T ss_pred HHhcC-CC---CCHHHHHHHHHhC-CCHH
Confidence 74221 11 1235566778888 7654
No 198
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.64 E-value=0.00094 Score=76.06 Aligned_cols=180 Identities=16% Similarity=0.150 Sum_probs=96.9
Q ss_pred CccccchHHHHHHHHHHhcC----CC---CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRD----EP---TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~----~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 250 (1096)
.+++|.++.++.+.+.+... .. .....+-|.|+|++|+|||++|+++++... ..-++.++.. ++
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-----~~~~~~v~~~----~l 204 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-----NSTFFSISSS----DL 204 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-----SSEEEEECCC------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-----CCCEEEEeHH----HH
Confidence 46899999998888776311 00 012346789999999999999999998541 1123333322 11
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCCh-------h----hHHHhhcccCC---CCCCcEEE
Q 043647 251 TKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNY-------S----LWNTLKSPFRA---GASGSKIL 316 (1096)
Q Consensus 251 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------~----~~~~l~~~l~~---~~~gs~ii 316 (1096)
.... .+ . .......+ +...-..++.+|+||+++.... . ....+...+.. ...+..||
T Consensus 205 ~~~~---~g-~--~~~~~~~~---f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI 275 (444)
T 2zan_A 205 VSKW---LG-E--SEKLVKNL---FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVL 275 (444)
T ss_dssp -------------CCCTHHHH---HHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEE
T ss_pred Hhhh---cc-h--HHHHHHHH---HHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEE
Confidence 1110 01 0 11112222 2222235778999999974310 1 12223333322 12455677
Q ss_pred EEcCchhhhhh-c--CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCc
Q 043647 317 VTTCSTDVALT-V--GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLP 379 (1096)
Q Consensus 317 vTtR~~~v~~~-~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 379 (1096)
.||..+..... + .-...+.+...+.++..++|..++.... . .-.......|++.+.|..
T Consensus 276 ~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-~---~l~~~~l~~la~~t~G~s 337 (444)
T 2zan_A 276 GATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQ-N---SLTEADFQELGRKTDGYS 337 (444)
T ss_dssp EEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC-E---ECCHHHHHHHHHHTTTCC
T ss_pred ecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCC-C---CCCHHHHHHHHHHcCCCC
Confidence 67765432111 0 1224677888888888889888773221 1 111244567888888853
No 199
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.64 E-value=0.0011 Score=71.40 Aligned_cols=181 Identities=15% Similarity=0.090 Sum_probs=97.5
Q ss_pred CccccchHHHHHHHHHHhcCC-------CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDE-------PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 250 (1096)
.+++|.+..++.+.+++.... ......+.+.|+|++|+||||+|+++++.... ..+.++++.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~----~~~~i~~~~l~~---- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA----TFLNISAASLTS---- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC----EEEEEESTTTSS----
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC----CeEEeeHHHHhh----
Confidence 468999999999888763210 00112467899999999999999999875321 122333322110
Q ss_pred HHHHHHhccCCCCCCCcHHHHH-HHHHHHhCCCcEEEEEecCCCCCh-----------hhHHHhhccc---CCC--CCCc
Q 043647 251 TKSILESITFSPNSLKDLNQIQ-VQLREAVAGKRFLIVLDDVWSKNY-----------SLWNTLKSPF---RAG--ASGS 313 (1096)
Q Consensus 251 ~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l---~~~--~~gs 313 (1096)
. . ..+..... ..+......++.+|++|+++.... .....+...+ +.. +.+.
T Consensus 93 ----------~-~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 93 ----------K-Y-VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp ----------S-S-CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CE
T ss_pred ----------c-c-cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcE
Confidence 0 0 01122222 222223345678999999954310 1111122111 111 1345
Q ss_pred EEEEEcCchh-----hhhhcCCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCch-hHHH
Q 043647 314 KILVTTCSTD-----VALTVGTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPL-AAET 384 (1096)
Q Consensus 314 ~iivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~ 384 (1096)
.||.||.... +... -...+.+...+.++..+++...+-.... .-..+....|++.+.|.+- ++..
T Consensus 161 ~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~----~~~~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGS----PLDTEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp EEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSC----CSCHHHHHHHHHHTTTCCHHHHHH
T ss_pred EEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCCHHHHHH
Confidence 5666776543 2221 1245777777888888888776632111 1123456778888988875 4433
No 200
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.63 E-value=3e-06 Score=94.39 Aligned_cols=82 Identities=18% Similarity=0.158 Sum_probs=51.5
Q ss_pred CCcceEEEecccccccC-----CCCcC-CCCccceeecccccccc--cccccccCCCCcEEeccCcccCccc-----Ccc
Q 043647 555 FTKLRVLSLKKYYITEL-----PHSIG-DLKHLRYINLSETMIRC--LPESICSLCNLQFLILRGCYRLKKL-----PSN 621 (1096)
Q Consensus 555 ~~~Lr~L~L~~~~~~~l-----p~~i~-~l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~l-----p~~ 621 (1096)
++.|+.|++++|.++.. ...+. ...+|++|+|++|.+.. +..-...+.+|++|+|++| .+... ...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHH
Confidence 35677888888887632 22222 23688888888888763 2223345677888888886 44332 122
Q ss_pred c-cCCCCCceEEecccc
Q 043647 622 L-RNLINLRHLVVTYVD 637 (1096)
Q Consensus 622 i-~~l~~L~~L~l~~~~ 637 (1096)
+ ...++|++|++++|.
T Consensus 150 L~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNP 166 (372)
T ss_dssp HHSTTCCCCEEECCSSC
T ss_pred HHhcCCccceeeCCCCC
Confidence 2 245778888888876
No 201
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.59 E-value=0.015 Score=64.87 Aligned_cols=145 Identities=16% Similarity=0.160 Sum_probs=95.1
Q ss_pred CCCCCcCeEEEecCCCcCcC-CCCCCCCCCcCeEEEeCCCCCcccCCCCCC--CCcCeEEEccCcCCcCCCCCCCCCCCC
Q 043647 913 HNNTSLGCIWIWKCENLKSL-PEGLPNLNSLHNIYVWDCPSLVSFPEGGLP--NCSLSVTIGKCEKLKALPNLNAYESPI 989 (1096)
Q Consensus 913 ~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~~~~~--~~L~~L~l~~c~~l~~l~~l~~~~~~~ 989 (1096)
..+..+..+.+... ...+ ...+....+|+.+.+.. .+..+....+. ..|+.+.+.. +++.+..
T Consensus 191 ~~~~~~~~~~~~~~--~~~i~~~~f~~~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~-------- 256 (379)
T 4h09_A 191 PAAKTGTEFTIPST--VKTVTAYGFSYGKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPK--NVTSIGS-------- 256 (379)
T ss_dssp CTTCCCSEEECCTT--CCEECTTTTTTCSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECT--TCCEECT--------
T ss_pred cccccccccccccc--eeEEeecccccccccceeeecc--ceeEEccccccCCccceEEEcCC--CccEeCc--------
Confidence 34445555544431 2222 23456677888887753 45566544433 5677777754 2444332
Q ss_pred cccCCCCCCcceEEEcCCCCccccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCCCCCCCCCCC
Q 043647 990 DWGLHKLTSLKILCVIGCPDAVSFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCPKLTSFPEAG 1069 (1096)
Q Consensus 990 ~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~ 1069 (1096)
..+.++.+|+.+.+.. .+..++.. +|..+++|+.+.+.+ +.++.|+...|.++++|+.+.|.. .+++++...
T Consensus 257 -~aF~~~~~l~~i~l~~--~i~~i~~~--aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~a 328 (379)
T 4h09_A 257 -FLLQNCTALKTLNFYA--KVKTVPYL--LCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYA 328 (379)
T ss_dssp -TTTTTCTTCCEEEECC--CCSEECTT--TTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTT
T ss_pred -cccceeehhccccccc--cceecccc--ccccccccccccccc-cccceehhhhhcCCCCCCEEEcCc--cccEEHHHH
Confidence 4688899999999975 47777764 367889999999987 669999888999999999999964 466666554
Q ss_pred c--cccccceee
Q 043647 1070 L--PSSLLELYI 1079 (1096)
Q Consensus 1070 l--~~~L~~L~i 1079 (1096)
+ ..+|+.+.+
T Consensus 329 F~~C~~L~~i~i 340 (379)
T 4h09_A 329 FKNCKALSTISY 340 (379)
T ss_dssp TTTCTTCCCCCC
T ss_pred hhCCCCCCEEEE
Confidence 4 234555554
No 202
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.53 E-value=0.00038 Score=74.54 Aligned_cols=147 Identities=10% Similarity=0.048 Sum_probs=89.9
Q ss_pred cchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccc-c--cccCcEEEEEecC-ccChHHHHHHHHHh
Q 043647 182 GRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKA-V--EMFNLRSWVCVSD-DFDILRITKSILES 257 (1096)
Q Consensus 182 gr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~--~~f~~~~wv~~~~-~~~~~~~~~~i~~~ 257 (1096)
|-++.++.+.+.+... +.+...++|+.|+||||+|+.+.+... . .+.+ ..++..+. ...+++ .+++.+.
T Consensus 1 g~~~~~~~L~~~i~~~-----~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----EGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC-----SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCC-----CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHHHH
Confidence 3455566677766432 257899999999999999999876411 1 1223 23443322 122211 1222222
Q ss_pred ccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCch-hhhhhcCCcceeeC
Q 043647 258 ITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCST-DVALTVGTAEYYNL 336 (1096)
Q Consensus 258 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~l 336 (1096)
+...+ ..+++-++|+|+++.-.....+.+...+......+.+|++|.++ .+...+... .+++
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 22111 13567799999998776677777777776555667777776544 333333333 8999
Q ss_pred CCCChHhHHHHHHHhh
Q 043647 337 KLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 337 ~~L~~~~~~~lf~~~a 352 (1096)
.+++.++..+.+.+.+
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999887765
No 203
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.51 E-value=0.0004 Score=79.75 Aligned_cols=146 Identities=15% Similarity=0.155 Sum_probs=79.4
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc----c-cCc-EEEEEecCccChHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE----M-FNL-RSWVCVSDDFDILRIT 251 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~-f~~-~~wv~~~~~~~~~~~~ 251 (1096)
+.++||+.+++.++..+.... ..-+.|+|++|+|||++|+.++...... . .+. .+.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~-----~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT-----KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS-----SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCccCcHHHHHHHHHHHhccC-----CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---------
Confidence 358999999999999986532 2456899999999999999988753211 0 011 1222222
Q ss_pred HHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchhhhhhc---
Q 043647 252 KSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTDVALTV--- 328 (1096)
Q Consensus 252 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~--- 328 (1096)
....+ ...... ...+...-..++.+|++|. .......+...+..+ ..++|.+|.........
T Consensus 246 ----~~~~g--~~e~~~---~~~~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~~g--~v~vI~at~~~e~~~~~~~~ 310 (468)
T 3pxg_A 246 ----TKYRG--EFEDRL---KKVMDEIRQAGNIILFIDA----AIDASNILKPSLARG--ELQCIGATTLDEYRKYIEKD 310 (468)
T ss_dssp -------------CTTH---HHHHHHHHTCCCCEEEECC------------CCCTTSS--SCEEEEECCTTTTHHHHTTC
T ss_pred ----ccccc--hHHHHH---HHHHHHHHhcCCeEEEEeC----chhHHHHHHHhhcCC--CEEEEecCCHHHHHHHhhcC
Confidence 00000 001112 2223333346788999991 112223343333322 34666666544321111
Q ss_pred ----CCcceeeCCCCChHhHHHHHHHhh
Q 043647 329 ----GTAEYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 329 ----~~~~~~~l~~L~~~~~~~lf~~~a 352 (1096)
.....+.++..+.++..+++...+
T Consensus 311 ~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 112468999999999999998765
No 204
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.48 E-value=0.00082 Score=72.33 Aligned_cols=179 Identities=12% Similarity=0.118 Sum_probs=97.3
Q ss_pred CccccchHHHHHHHHHHhcC--------CCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHH
Q 043647 178 PAVFGRDEDKAKILEMVLRD--------EPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILR 249 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~--------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~ 249 (1096)
.+++|.++.++++.+++... ..+-...+.|.|+|++|+|||++|+++++.... -++.+. ..+
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~------~~i~v~----~~~ 84 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA------NFISIK----GPE 84 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC------EEEEEC----HHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC------CEEEEE----hHH
Confidence 35889998888888776421 001123467899999999999999999975421 122222 223
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCC--------------hhhHHHhhcccCC--CCCCc
Q 043647 250 ITKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKN--------------YSLWNTLKSPFRA--GASGS 313 (1096)
Q Consensus 250 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------------~~~~~~l~~~l~~--~~~gs 313 (1096)
+..... +.. ...+...+.......+.+|++|+++.-. ......+...+.. ...+.
T Consensus 85 l~~~~~----g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v 155 (301)
T 3cf0_A 85 LLTMWF----GES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNV 155 (301)
T ss_dssp HHHHHH----TTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSE
T ss_pred HHhhhc----Cch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCE
Confidence 332221 111 1122233333334668999999995310 0112333333321 12345
Q ss_pred EEEEEcCchhhh-hh-cC---CcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCch
Q 043647 314 KILVTTCSTDVA-LT-VG---TAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPL 380 (1096)
Q Consensus 314 ~iivTtR~~~v~-~~-~~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL 380 (1096)
.||.||...... .. .. -...+.+...+.++-.+++....-... ....... ..+++.+.|.|=
T Consensus 156 ~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~-~~~~~~~----~~la~~~~g~sg 222 (301)
T 3cf0_A 156 FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP-VAKDVDL----EFLAKMTNGFSG 222 (301)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCSSCCH----HHHHHTCSSCCH
T ss_pred EEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC-CCccchH----HHHHHHcCCCCH
Confidence 677777655322 11 11 224688999999998888877763221 1111122 345566667663
No 205
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.48 E-value=8e-05 Score=75.16 Aligned_cols=118 Identities=18% Similarity=0.151 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCC
Q 043647 186 DKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSL 265 (1096)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 265 (1096)
.++.+.+++..... ....+.+.|+|++|+|||+||+++++..... ...++|+++. .+...+......
T Consensus 37 ~~~~~~~~~~~~~~-~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~----- 103 (202)
T 2w58_A 37 AIRFAERFVAEYEP-GKKMKGLYLHGSFGVGKTYLLAAIANELAKR-NVSSLIVYVP------ELFRELKHSLQD----- 103 (202)
T ss_dssp HHHHHHHHHHHCCS-SCCCCEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEEEHH------HHHHHHHHC--------
T ss_pred HHHHHHHHHHHhhh-ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEhH------HHHHHHHHHhcc-----
Confidence 44555566543321 1122678999999999999999999864332 2345666543 444444433321
Q ss_pred CcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHH--hhc-ccCCC-CCCcEEEEEcCc
Q 043647 266 KDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNT--LKS-PFRAG-ASGSKILVTTCS 321 (1096)
Q Consensus 266 ~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~iivTtR~ 321 (1096)
.........+. . .-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 104 ~~~~~~~~~~~----~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 QTMNEKLDYIK----K-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp CCCHHHHHHHH----H-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred chHHHHHHHhc----C-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 11222222222 2 2399999997643333322 221 11111 235578888764
No 206
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.47 E-value=5.2e-05 Score=78.96 Aligned_cols=79 Identities=18% Similarity=0.190 Sum_probs=57.9
Q ss_pred CCCCcceEEEecccccccC---CCCcCCCCccceeecccccccccccccccCC--CCcEEeccCcccCcccCc-------
Q 043647 553 PKFTKLRVLSLKKYYITEL---PHSIGDLKHLRYINLSETMIRCLPESICSLC--NLQFLILRGCYRLKKLPS------- 620 (1096)
Q Consensus 553 ~~~~~Lr~L~L~~~~~~~l---p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~~~l~~lp~------- 620 (1096)
.++++|+.|+|++|.++.+ |..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.-...+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4678899999999998765 45667889999999999988877 3355555 888888888643333442
Q ss_pred cccCCCCCceEE
Q 043647 621 NLRNLINLRHLV 632 (1096)
Q Consensus 621 ~i~~l~~L~~L~ 632 (1096)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 256777888775
No 207
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.46 E-value=0.00014 Score=68.55 Aligned_cols=111 Identities=12% Similarity=0.135 Sum_probs=61.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
-.++|++..++++.+.+..-.. ...-|.|+|.+|+|||++|+.+++... -++.+....-....
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~---~~~~vll~G~~GtGKt~lA~~i~~~~~-------~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK---RTSPVFLTGEAGSPFETVARYFHKNGT-------PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT---CSSCEEEEEETTCCHHHHHGGGCCTTS-------CEECCSSTTHHHHC-------
T ss_pred cCceeCCHHHHHHHHHHHHHhC---CCCcEEEECCCCccHHHHHHHHHHhCC-------CeEEechhhCChHh-------
Confidence 3578999988888887643211 123477999999999999999887432 22222211000000
Q ss_pred ccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCC-CCCcEEEEEcCc
Q 043647 258 ITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAG-ASGSKILVTTCS 321 (1096)
Q Consensus 258 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtR~ 321 (1096)
...+.+. .+.-.++||+++.........+...+... ..+.+||.||..
T Consensus 67 --------------~~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 --------------PMELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp --------------HHHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred --------------hhhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 1111111 12347899999876655555555444332 245678887753
No 208
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.42 E-value=0.00021 Score=88.84 Aligned_cols=153 Identities=14% Similarity=0.179 Sum_probs=79.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc----cc-C-cEEEEEecCccChHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE----MF-N-LRSWVCVSDDFDILRIT 251 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~f-~-~~~wv~~~~~~~~~~~~ 251 (1096)
+.++||++++.+++..|.... .+.+.++|++|+||||+|+.+++..... .. + .+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~-----~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~----- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT-----KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA----- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS-----CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------
T ss_pred cccCCcHHHHHHHHHHHhcCC-----CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-----
Confidence 458999999999999986532 2346899999999999999998753211 11 1 123333211100
Q ss_pred HHHHHhccCCCCCCCcHHH-HHHHHHHHhC-CCcEEEEEecCCCCC--------hhhHHHhhcccCCCCCCcEEEEEcCc
Q 043647 252 KSILESITFSPNSLKDLNQ-IQVQLREAVA-GKRFLIVLDDVWSKN--------YSLWNTLKSPFRAGASGSKILVTTCS 321 (1096)
Q Consensus 252 ~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~-~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTtR~ 321 (1096)
+... ..+... +...+...-. +++.+|++|++..-. ......+...+.. .+..+|.+|..
T Consensus 240 --------g~~~-~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~ 308 (854)
T 1qvr_A 240 --------GAKY-RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTL 308 (854)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECH
T ss_pred --------cCcc-chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCc
Confidence 0000 112222 2222333223 468999999996532 1111122222222 23345555544
Q ss_pred hhhh-----hhc-CCcceeeCCCCChHhHHHHHHHh
Q 043647 322 TDVA-----LTV-GTAEYYNLKLLSDDDCWSVFVKH 351 (1096)
Q Consensus 322 ~~v~-----~~~-~~~~~~~l~~L~~~~~~~lf~~~ 351 (1096)
.... ..+ .....+.+++++.++..+++...
T Consensus 309 ~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 309 DEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred hHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 3321 111 11245889999999999988654
No 209
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.42 E-value=0.004 Score=69.73 Aligned_cols=185 Identities=15% Similarity=0.079 Sum_probs=96.7
Q ss_pred CccccchHHHHHHHHHHhcC----CC---CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRD----EP---TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~----~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 250 (1096)
.+++|.+..++.+.+++... +. .....+-|.|+|++|+|||++|+++++.... ..+.++++.-... .
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~----~~~~v~~~~l~~~--~ 188 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA----TFFNISAASLTSK--Y 188 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC----EEEEECSCCC------
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC----cEEEeeHHHhhcc--c
Confidence 46899999999998877321 00 0112467899999999999999999875321 1222322221110 0
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCC-----------hhhHHHhhcccC---C-CCCCcEE
Q 043647 251 TKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKN-----------YSLWNTLKSPFR---A-GASGSKI 315 (1096)
Q Consensus 251 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~---~-~~~gs~i 315 (1096)
.......+...+...-.....+|+||+++... ......+...+. . ......|
T Consensus 189 -------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~v 255 (389)
T 3vfd_A 189 -------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLV 255 (389)
T ss_dssp ----------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEE
T ss_pred -------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEE
Confidence 00111112222222223456899999995320 011112222221 1 1123455
Q ss_pred EEEcCchhhh-hhc--CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCch-hHHHH
Q 043647 316 LVTTCSTDVA-LTV--GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPL-AAETL 385 (1096)
Q Consensus 316 ivTtR~~~v~-~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 385 (1096)
|.||...... ..+ .-...+.+...+.++..+++...+-.... .-..+....|++.+.|..- +|..+
T Consensus 256 I~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~----~l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 256 MGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS----PLTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC----CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 5566543211 111 11245788889999999999887733211 1123456788888888653 44333
No 210
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.38 E-value=0.00084 Score=72.90 Aligned_cols=120 Identities=17% Similarity=0.223 Sum_probs=66.0
Q ss_pred ccccchHHHHHHHHHHhcCC----CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHH
Q 043647 179 AVFGRDEDKAKILEMVLRDE----PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSI 254 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 254 (1096)
.++|.+..++.+...+.... ........+.|+|++|+|||++|+.++...... -...+.+.++...... ....+
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~-~~~~~~~~~~~~~~~~-~~~~l 95 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-EEAMIRIDMTEYMEKH-AVSRL 95 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC-GGGEEEEEGGGCCSTT-HHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC-CcceEEeecccccccc-cHHHh
Confidence 46799888888887775421 111224589999999999999999998753221 1124455554432221 11222
Q ss_pred HHhccCCCC--CCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhccc
Q 043647 255 LESITFSPN--SLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPF 306 (1096)
Q Consensus 255 ~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l 306 (1096)
. +.... .......+...+. ....-+++||+++.........+...+
T Consensus 96 ~---g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~l 143 (311)
T 4fcw_A 96 I---GAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQML 143 (311)
T ss_dssp H---CCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHH
T ss_pred c---CCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHH
Confidence 1 11111 0111112222222 234579999999776655556555444
No 211
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.0031 Score=69.03 Aligned_cols=178 Identities=17% Similarity=0.088 Sum_probs=96.3
Q ss_pred CccccchHHHHHHHHHHhc----CC----CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHH
Q 043647 178 PAVFGRDEDKAKILEMVLR----DE----PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILR 249 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~----~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~ 249 (1096)
.++.|-++.+++|.+.+.- ++ .+-...+-|.++|++|.|||.||+++++..... .+.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~----f~~v~~s~l~s--- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK----FIRVSGAELVQ--- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE----EEEEEGGGGSC---
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC----ceEEEhHHhhc---
Confidence 3577888888777665432 10 012234668899999999999999999864332 22333322111
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCCh--------h------hHHHhhcccCC--CCCCc
Q 043647 250 ITKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNY--------S------LWNTLKSPFRA--GASGS 313 (1096)
Q Consensus 250 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------~------~~~~l~~~l~~--~~~gs 313 (1096)
..-......+.......-+..+++|++|+++..-. . ....+...+.. ...+-
T Consensus 221 ------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 288 (405)
T 4b4t_J 221 ------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNI 288 (405)
T ss_dssp ------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCE
T ss_pred ------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCe
Confidence 00011112222222223346789999999974210 0 11223222222 22344
Q ss_pred EEEEEcCchhhhhh-c----CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCc
Q 043647 314 KILVTTCSTDVALT-V----GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLP 379 (1096)
Q Consensus 314 ~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 379 (1096)
.||.||..++.... + .-...+.++.-+.++-.++|..+.-+ .......+ ..+|++.+.|.-
T Consensus 289 ~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~-~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 289 KIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK-MNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp EEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT-SBCCSSCC----HHHHHHHCCSCC
T ss_pred EEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC-CCCCccCC----HHHHHHHCCCCC
Confidence 56667765543211 1 23357889888988889999877622 11111122 346777787754
No 212
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.29 E-value=0.0023 Score=78.76 Aligned_cols=155 Identities=12% Similarity=0.153 Sum_probs=87.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-----ccCcEEEE-EecCccChHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-----MFNLRSWV-CVSDDFDILRIT 251 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~f~~~~wv-~~~~~~~~~~~~ 251 (1096)
..++||+++++++++.|... ...-+.|+|.+|+|||++|+.+++..... ..+..+|. .++. +
T Consensus 186 d~~iGr~~~i~~l~~~l~~~-----~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~------l- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR-----RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS------L- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS-----SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---------
T ss_pred CCccCCHHHHHHHHHHHhcc-----CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH------H-
Confidence 45899999999999998543 23457899999999999999988753211 12333332 1110 0
Q ss_pred HHHHHhccCCCCCCCcHHHHHHHHHHHh-CCCcEEEEEecCCCC--------ChhhHHHhhcccCCCCCCcEEEEEcCch
Q 043647 252 KSILESITFSPNSLKDLNQIQVQLREAV-AGKRFLIVLDDVWSK--------NYSLWNTLKSPFRAGASGSKILVTTCST 322 (1096)
Q Consensus 252 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~iivTtR~~ 322 (1096)
+... ....+.+.....+.+.+ +.++.+|++|++..- ...+...+...+... .+..+|.+|...
T Consensus 254 ------~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at~~~ 325 (758)
T 1r6b_X 254 ------LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ 325 (758)
T ss_dssp -------CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEECHH
T ss_pred ------hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEeCch
Confidence 0001 11122333333333333 456789999999643 111222222222222 245666666654
Q ss_pred hhhhhc-------CCcceeeCCCCChHhHHHHHHHhh
Q 043647 323 DVALTV-------GTAEYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 323 ~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 352 (1096)
...... .....+.++..+.++..+++...+
T Consensus 326 ~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 432111 111368899999999888887654
No 213
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.27 E-value=0.0024 Score=69.80 Aligned_cols=176 Identities=15% Similarity=0.152 Sum_probs=92.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
..++|.+..++.+...+............+.|+|++|+||||||+.++...... +.. .+....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~-----~~~-~sg~~~----------- 87 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN-----IHV-TSGPVL----------- 87 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC-----EEE-EETTTC-----------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEE-EechHh-----------
Confidence 457888877777665553210001224578999999999999999998754221 111 111100
Q ss_pred ccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCCC--------C----------CcEEE-EE
Q 043647 258 ITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGA--------S----------GSKIL-VT 318 (1096)
Q Consensus 258 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~--------~----------gs~ii-vT 318 (1096)
....++... ...+ .++.++++|++..-.....+.+...+.... . ...++ .|
T Consensus 88 --------~~~~~l~~~-~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at 157 (334)
T 1in4_A 88 --------VKQGDMAAI-LTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGAT 157 (334)
T ss_dssp --------CSHHHHHHH-HHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEE
T ss_pred --------cCHHHHHHH-HHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEec
Confidence 001111111 1122 234577889886543323333322211110 0 11222 34
Q ss_pred cCchhhhhhc--CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCchhHHH
Q 043647 319 TCSTDVALTV--GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLPLAAET 384 (1096)
Q Consensus 319 tR~~~v~~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 384 (1096)
++...+.... .....+.+++.+.++-.+++.+.+-... . .-..+.+..|++.+.|.|-.+..
T Consensus 158 ~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~-~---~~~~~~~~~ia~~~~G~~R~a~~ 221 (334)
T 1in4_A 158 TRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD-V---EIEDAAAEMIAKRSRGTPRIAIR 221 (334)
T ss_dssp SCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-C---CBCHHHHHHHHHTSTTCHHHHHH
T ss_pred CCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC-C---CcCHHHHHHHHHhcCCChHHHHH
Confidence 4433221111 1113578999999999999988763211 1 22346678899999999965443
No 214
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.27 E-value=0.001 Score=76.25 Aligned_cols=177 Identities=14% Similarity=0.126 Sum_probs=96.3
Q ss_pred CccccchHHHHHHHHHHhcCC--------CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDE--------PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILR 249 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~--------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~ 249 (1096)
.+++|.+..++++.+++...- .+....+-|.|+|++|+|||++|+++++.... . .+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~-~---fv~vn~~------- 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-F---FFLINGP------- 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS-E---EEEEEHH-------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC-C---EEEEEch-------
Confidence 358999999999888764310 00122456899999999999999999875321 1 2233321
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCC--------C---hhhHHHhhcccCC--CCCCcEEE
Q 043647 250 ITKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSK--------N---YSLWNTLKSPFRA--GASGSKIL 316 (1096)
Q Consensus 250 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--------~---~~~~~~l~~~l~~--~~~gs~ii 316 (1096)
.+...+. ......+...+.....+++.+|+||+++.- . ......+...+.. ...+..||
T Consensus 273 ---~l~~~~~-----g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vI 344 (489)
T 3hu3_A 273 ---EIMSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (489)
T ss_dssp ---HHHTSCT-----THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEE
T ss_pred ---Hhhhhhc-----chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEE
Confidence 1111111 111222333344444577889999999321 0 0112223333321 22344666
Q ss_pred EEcCchhh-hhhc----CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCC
Q 043647 317 VTTCSTDV-ALTV----GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGL 378 (1096)
Q Consensus 317 vTtR~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 378 (1096)
.||..... ...+ .-...+.+...+.++-.+++..++-... ...... ..++++.+.|.
T Consensus 345 aaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~-l~~~~~----l~~la~~t~g~ 406 (489)
T 3hu3_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVD----LEQVANETHGH 406 (489)
T ss_dssp EEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSC-BCTTCC----HHHHHHTCTTC
T ss_pred EecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCC-Ccchhh----HHHHHHHccCC
Confidence 67665432 1111 1224688999999999999988763211 111112 24566667664
No 215
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.26 E-value=0.0014 Score=75.12 Aligned_cols=97 Identities=6% Similarity=0.047 Sum_probs=58.9
Q ss_pred EEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEc---------Cc----h-hhh-hhcCCcceeeCCCCChHhHHHHH
Q 043647 284 FLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTT---------CS----T-DVA-LTVGTAEYYNLKLLSDDDCWSVF 348 (1096)
Q Consensus 284 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt---------R~----~-~v~-~~~~~~~~~~l~~L~~~~~~~lf 348 (1096)
-++++|++..-+.+.++.+...+...... -+|+.| .+ + .+. ........+.+.+++.++..+.+
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 38999999887777788887776654334 344344 11 1 000 01122245799999999999999
Q ss_pred HHhhcCCCCCCCCcchhHHHHHHHHHh-CCCchhHHHH
Q 043647 349 VKHAFEKRDVGLHRHMGSIRKKVVQKC-RGLPLAAETL 385 (1096)
Q Consensus 349 ~~~a~~~~~~~~~~~~~~~~~~i~~~~-~g~PLai~~~ 385 (1096)
...+-..+ . .-..+....|++.+ +|.|-.+..+
T Consensus 376 ~~~~~~~~-~---~~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEG-I---NISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHT-C---CBCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhC-C---CCCHHHHHHHHHHccCCCHHHHHHH
Confidence 87762111 1 12234566788888 7887655443
No 216
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.24 E-value=0.00015 Score=68.66 Aligned_cols=38 Identities=16% Similarity=0.130 Sum_probs=27.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEec
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVS 242 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~ 242 (1096)
-..++|+|+.|+|||||++.++.......+ .++++...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~-~~~~~~~~ 73 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGK-NAAYIDAA 73 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTC-CEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCC-cEEEEcHH
Confidence 358999999999999999999975432211 14555543
No 217
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.19 E-value=4.9e-05 Score=84.59 Aligned_cols=81 Identities=21% Similarity=0.212 Sum_probs=37.5
Q ss_pred CcceEEEecccccccC-----CCCc-CCCCccceeecccccccc-----cccccccCCCCcEEeccCcccCcc-----cC
Q 043647 556 TKLRVLSLKKYYITEL-----PHSI-GDLKHLRYINLSETMIRC-----LPESICSLCNLQFLILRGCYRLKK-----LP 619 (1096)
Q Consensus 556 ~~Lr~L~L~~~~~~~l-----p~~i-~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~-----lp 619 (1096)
++|+.|+|++|.++.. ...+ ....+|++|+|++|.|+. ++..+..+++|++|+|++|. +.. ++
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~ 204 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLA 204 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHH
Confidence 3455555555554321 1111 123455555555555542 33344455555555555542 322 23
Q ss_pred ccccCCCCCceEEecccc
Q 043647 620 SNLRNLINLRHLVVTYVD 637 (1096)
Q Consensus 620 ~~i~~l~~L~~L~l~~~~ 637 (1096)
..+...++|++|++++|.
T Consensus 205 ~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHGGGCSCCCEEECCSSC
T ss_pred HHHhcCCCcCeEECCCCC
Confidence 334444555555555554
No 218
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.18 E-value=0.0017 Score=79.71 Aligned_cols=147 Identities=14% Similarity=0.157 Sum_probs=80.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-----ccCcEEEEEecCccChHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-----MFNLRSWVCVSDDFDILRITK 252 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~f~~~~wv~~~~~~~~~~~~~ 252 (1096)
+.++||+++++++...|.... ..-+.++|++|+|||++|+.+++..... ..+..+ +.+..
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~-----~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~-~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT-----KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV-MTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS-----SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE-ECC-----------
T ss_pred CCccCchHHHHHHHHHHhCCC-----CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeE-EEecc---------
Confidence 458999999999999986532 2347899999999999999988753111 011111 11111
Q ss_pred HHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchhhhhhc----
Q 043647 253 SILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTDVALTV---- 328 (1096)
Q Consensus 253 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~---- 328 (1096)
+.. ....-...+...+......++.+|++|.. . .....+...+.. ...++|.||.........
T Consensus 245 ------g~~-~~G~~e~~l~~~~~~~~~~~~~iLfiD~~--~--~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 245 ------GTK-YRGEFEDRLKKVMDEIRQAGNIILFIDAA--I--DASNILKPSLAR--GELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp ---------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTCS
T ss_pred ------ccc-ccchHHHHHHHHHHHHHhcCCEEEEEcCc--h--hHHHHHHHHHhc--CCEEEEeCCChHHHHHHhhccH
Confidence 000 00000112223333344567889999921 1 222233333322 235666666554421111
Q ss_pred ---CCcceeeCCCCChHhHHHHHHHhh
Q 043647 329 ---GTAEYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 329 ---~~~~~~~l~~L~~~~~~~lf~~~a 352 (1096)
.....+.++..+.++..+++....
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 112468999999999999998655
No 219
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.12 E-value=0.00012 Score=72.53 Aligned_cols=89 Identities=15% Similarity=0.100 Sum_probs=59.2
Q ss_pred hhhhcCCCCcceEEEeccc-ccc-----cCCCCcCCCCccceeecccccccc-----cccccccCCCCcEEeccCcccCc
Q 043647 548 LSNLLPKFTKLRVLSLKKY-YIT-----ELPHSIGDLKHLRYINLSETMIRC-----LPESICSLCNLQFLILRGCYRLK 616 (1096)
Q Consensus 548 ~~~~~~~~~~Lr~L~L~~~-~~~-----~lp~~i~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~ 616 (1096)
+...+...+.|++|+|++| .+. .+...+....+|++|+|++|.|.. +...+...++|++|+|++| .+.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FIS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCC
Confidence 4455667777888888877 654 234455666778888888877752 4455566677888888875 344
Q ss_pred c-----cCccccCCCCCceEEe--cccc
Q 043647 617 K-----LPSNLRNLINLRHLVV--TYVD 637 (1096)
Q Consensus 617 ~-----lp~~i~~l~~L~~L~l--~~~~ 637 (1096)
. +...+...++|++|++ ++|.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 3 4555666777888888 6565
No 220
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.0038 Score=69.48 Aligned_cols=178 Identities=17% Similarity=0.124 Sum_probs=90.8
Q ss_pred CccccchHHHHHHHHHHhcC----C----CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHH
Q 043647 178 PAVFGRDEDKAKILEMVLRD----E----PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILR 249 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~----~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~ 249 (1096)
.++.|-++.+++|.+.+.-. + .+-...+-|.++|++|+|||++|+++++..... .+.|..+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~----~~~v~~~~l~~--- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA----FIRVNGSEFVH--- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE----EEEEEGGGTCC---
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----eEEEecchhhc---
Confidence 46789998888887655321 0 022345678999999999999999999864331 22333322111
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCC----------Chh----hHHHhhcccCC--CCCCc
Q 043647 250 ITKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSK----------NYS----LWNTLKSPFRA--GASGS 313 (1096)
Q Consensus 250 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------~~~----~~~~l~~~l~~--~~~gs 313 (1096)
..-......+.......-+..++++++|+++.. ... ....+...+.. ...+-
T Consensus 245 ------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v 312 (428)
T 4b4t_K 245 ------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNV 312 (428)
T ss_dssp ------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSE
T ss_pred ------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCE
Confidence 001111122222223333467899999998521 000 12223222221 22345
Q ss_pred EEEEEcCchhhhh-hc-CC---cceeeCCCCCh-HhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCc
Q 043647 314 KILVTTCSTDVAL-TV-GT---AEYYNLKLLSD-DDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLP 379 (1096)
Q Consensus 314 ~iivTtR~~~v~~-~~-~~---~~~~~l~~L~~-~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 379 (1096)
.||.||..++... .+ .. ...+.+..++. ++-.++|..+.-+ .......++ ..|++.+.|+-
T Consensus 313 ~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~-~~l~~~~dl----~~lA~~t~G~s 379 (428)
T 4b4t_K 313 KVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASK-MSLAPEADL----DSLIIRNDSLS 379 (428)
T ss_dssp EEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHS-SCBCTTCCH----HHHHHHTTTCC
T ss_pred EEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcC-CCCCcccCH----HHHHHHCCCCC
Confidence 6777776543221 11 11 24577766654 4445566655522 111111222 45677777753
No 221
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.06 E-value=0.0083 Score=62.78 Aligned_cols=182 Identities=16% Similarity=0.124 Sum_probs=91.7
Q ss_pred CccccchHHHHHHHHHH---hcCCC----CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHH
Q 043647 178 PAVFGRDEDKAKILEMV---LRDEP----TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L---~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 250 (1096)
.+++|.+..++++.+.+ ..... +....+-+.|+|++|+||||+|+.+++.... . .+.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~-~---~~~i~~~~~~~---- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV-P---FFTISGSDFVE---- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC-C---EEEECSCSSTT----
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC-C---EEEEeHHHHHH----
Confidence 46889988777665543 22110 0112345889999999999999999875321 1 22332221100
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCC----------h----hhHHHhhcccCC--CCCCcE
Q 043647 251 TKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKN----------Y----SLWNTLKSPFRA--GASGSK 314 (1096)
Q Consensus 251 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~----~~~~~l~~~l~~--~~~gs~ 314 (1096)
.. .......+...+.......+.++++|+++.-. . .....+...+.. ...+..
T Consensus 84 ------~~-----~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 152 (257)
T 1lv7_A 84 ------MF-----VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 152 (257)
T ss_dssp ------SC-----CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEE
T ss_pred ------Hh-----hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEE
Confidence 00 01112233333444445667899999983210 0 111222222211 123456
Q ss_pred EEEEcCchhhh-hhc-C---CcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCC-CchhHH
Q 043647 315 ILVTTCSTDVA-LTV-G---TAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRG-LPLAAE 383 (1096)
Q Consensus 315 iivTtR~~~v~-~~~-~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~ 383 (1096)
||.||...+.. ... . -...+.++..+.++-.+++..++-. .... ++ .....++....| .+--+.
T Consensus 153 vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~-~~l~--~~--~~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 153 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR-VPLA--PD--IDAAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT-SCBC--TT--CCHHHHHHTCTTCCHHHHH
T ss_pred EEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc-CCCC--cc--ccHHHHHHHcCCCCHHHHH
Confidence 77777655321 111 1 1246778888888888888776522 1111 11 112346667777 553333
No 222
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.0064 Score=67.75 Aligned_cols=178 Identities=16% Similarity=0.115 Sum_probs=96.5
Q ss_pred CccccchHHHHHHHHHHhc----CC----CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHH
Q 043647 178 PAVFGRDEDKAKILEMVLR----DE----PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILR 249 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~----~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~ 249 (1096)
.++.|-++.+++|.+.+.- ++ .+-...+-|.++|++|.|||++|+++++..... .+.|..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~----~~~v~~s~l~s--- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN----FIFSPASGIVD--- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE----EEEEEGGGTCC---
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC----EEEEehhhhcc---
Confidence 4578888888877665532 10 022345778999999999999999999864332 22333322111
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCC----------hh----hHHHhhcccCC--CCCCc
Q 043647 250 ITKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKN----------YS----LWNTLKSPFRA--GASGS 313 (1096)
Q Consensus 250 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~----~~~~l~~~l~~--~~~gs 313 (1096)
.........+.......-...+++|++|+++..- .. ....+...+.. ...+.
T Consensus 254 ------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~v 321 (437)
T 4b4t_L 254 ------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQT 321 (437)
T ss_dssp ------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSS
T ss_pred ------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCe
Confidence 0011111122222222334678999999996420 00 12223333322 22345
Q ss_pred EEEEEcCchhhhhh-c-CC---cceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCc
Q 043647 314 KILVTTCSTDVALT-V-GT---AEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLP 379 (1096)
Q Consensus 314 ~iivTtR~~~v~~~-~-~~---~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 379 (1096)
.||.||-.++.... + .. ...+.++..+.++-.++|..+.-+-. .....++ ..|++.+.|+-
T Consensus 322 ivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 322 KIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVK-KTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp EEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSC-BCSCCCH----HHHHHTCCSCC
T ss_pred EEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCC-CCcccCH----HHHHHhCCCCC
Confidence 67777765543321 1 11 24678888888888888887763211 1111222 45677777754
No 223
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.04 E-value=0.0025 Score=69.08 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=37.1
Q ss_pred CccccchHHHHHHHHHHhcC--CC-------CCCCceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 178 PAVFGRDEDKAKILEMVLRD--EP-------TDANFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~--~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
..++|.++.++.+...+... .. .......+.|+|++|+|||++|+.+.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35889999999988777541 00 00123467899999999999999998753
No 224
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.03 E-value=0.0066 Score=68.80 Aligned_cols=178 Identities=16% Similarity=0.128 Sum_probs=95.5
Q ss_pred CccccchHHHHHHHHHHh---cCC----CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHH
Q 043647 178 PAVFGRDEDKAKILEMVL---RDE----PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~---~~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 250 (1096)
.+++|.++.++++.+.+. ... -+..-.+-|.|+|++|+|||+||++++...... .+.++++.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~----f~~is~~~~~~~--- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP----FFHISGSDFVEL--- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC----EEEEEGGGTTTC---
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC----eeeCCHHHHHHH---
Confidence 468899887776665432 110 011122348899999999999999999754321 123333221110
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCCh--------------hhHHHhhcccCC--CCCCcE
Q 043647 251 TKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNY--------------SLWNTLKSPFRA--GASGSK 314 (1096)
Q Consensus 251 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~gs~ 314 (1096)
. ...........+.....+.+.+|+||+++.-.. .....+...+.. ...+..
T Consensus 89 -------~-----~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~vi 156 (476)
T 2ce7_A 89 -------F-----VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGII 156 (476)
T ss_dssp -------C-----TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEE
T ss_pred -------H-----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEE
Confidence 0 000112223334444456789999999954210 112233322221 123556
Q ss_pred EEEEcCchhhhhh--cC---CcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCc
Q 043647 315 ILVTTCSTDVALT--VG---TAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLP 379 (1096)
Q Consensus 315 iivTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 379 (1096)
||.||..++.... .. -...+.++..+.++-.+++..++-.. ....... ...|++.+.|..
T Consensus 157 VIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~-~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 157 VMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK-PLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCC
T ss_pred EEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC-CCcchhh----HHHHHHhcCCCc
Confidence 7777776644321 11 12367888888888888887766321 1111111 244777888876
No 225
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.01 E-value=0.0016 Score=68.80 Aligned_cols=47 Identities=23% Similarity=0.255 Sum_probs=33.6
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 179 AVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
.++|.+..+.++.+.+..-.. ....|.|+|.+|+|||++|+.+++..
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~---~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAP---LDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTT---SCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred cceeCCHHHHHHHHHHHHHhC---CCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 578999998888776643211 12457899999999999999998753
No 226
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.98 E-value=0.00041 Score=72.14 Aligned_cols=82 Identities=22% Similarity=0.173 Sum_probs=62.8
Q ss_pred CCCCccceeecccccccccc---cccccCCCCcEEeccCcccCcccCccccCCC--CCceEEeccccccccCcc------
Q 043647 576 GDLKHLRYINLSETMIRCLP---ESICSLCNLQFLILRGCYRLKKLPSNLRNLI--NLRHLVVTYVDLIREMPL------ 644 (1096)
Q Consensus 576 ~~l~~Lr~L~L~~~~i~~lp---~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~~p~------ 644 (1096)
.++++|++|+|++|.|..++ ..+..+++|++|+|++| .+..+. .+..+. +|++|++.+|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 46789999999999998654 66789999999999995 677663 355555 999999999985444542
Q ss_pred -cCCCCCCCCcCCceE
Q 043647 645 -GIKELKCLQMLSNFI 659 (1096)
Q Consensus 645 -~i~~L~~L~~L~~~~ 659 (1096)
.+..+++|+.|+...
T Consensus 245 ~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 245 AIRERFPKLLRLDGHE 260 (267)
T ss_dssp HHHHHCTTCCEESSCB
T ss_pred HHHHHCcccCeECCcC
Confidence 256778888876543
No 227
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.97 E-value=0.00094 Score=82.08 Aligned_cols=155 Identities=17% Similarity=0.194 Sum_probs=86.7
Q ss_pred CccccchHHHHHHHHHHhcCCC----CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEP----TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKS 253 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 253 (1096)
..++|.+..++.+...+..... .......+.++|++|+|||++|+.+++..... -...+.++++.-.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~-~~~~i~i~~s~~~~~~----- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD-EESMIRIDMSEYMEKH----- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC-TTCEEEEEGGGGCSSC-----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC-CcceEEEechhccccc-----
Confidence 4589999999888887754321 11223479999999999999999998753211 1223445443321100
Q ss_pred HHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCC-----------CCCcEEEEEcCch
Q 043647 254 ILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAG-----------ASGSKILVTTCST 322 (1096)
Q Consensus 254 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtR~~ 322 (1096)
. .....+...++ +....+|+||++..........+...+..+ ....+||.||...
T Consensus 565 ---------~--~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 565 ---------S--TSGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp ---------C--CC---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred ---------c--cccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence 0 00111111222 133458999999877666666655544331 1245888888621
Q ss_pred -----h----hhhhc------CCcceeeCCCCChHhHHHHHHHhh
Q 043647 323 -----D----VALTV------GTAEYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 323 -----~----v~~~~------~~~~~~~l~~L~~~~~~~lf~~~a 352 (1096)
. +...+ .-...+.+.+++.++-.+++...+
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 0 11111 112467888888888777776544
No 228
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.97 E-value=0.0018 Score=69.57 Aligned_cols=47 Identities=21% Similarity=0.291 Sum_probs=36.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..++|+...+.++.+.+..-.. ....|.|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~---~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP---SDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS---TTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC---CCCcEEEECCCCchHHHHHHHHHHh
Confidence 3588999999998887754221 1235779999999999999999874
No 229
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.013 Score=65.16 Aligned_cols=177 Identities=16% Similarity=0.085 Sum_probs=95.0
Q ss_pred ccccchHHHHHHHHHHhc----CC----CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHH
Q 043647 179 AVFGRDEDKAKILEMVLR----DE----PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~----~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 250 (1096)
++.|-++.+++|.+.+.- ++ .+-...+-|.++|++|.|||.+|+++++..... .+.|..+.-.+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~----fi~vs~s~L~s---- 281 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT----FIRVIGSELVQ---- 281 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE----EEEEEGGGGCC----
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC----eEEEEhHHhhc----
Confidence 578888888887765421 10 022346778999999999999999999864331 22333221110
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCCh------h--------hHHHhhcccCC--CCCCcE
Q 043647 251 TKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNY------S--------LWNTLKSPFRA--GASGSK 314 (1096)
Q Consensus 251 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------~--------~~~~l~~~l~~--~~~gs~ 314 (1096)
..-......+.......-...+++|++|+++..-. . ....+...+.. ...+..
T Consensus 282 -----------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~Vi 350 (467)
T 4b4t_H 282 -----------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIK 350 (467)
T ss_dssp -----------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEE
T ss_pred -----------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEE
Confidence 00011112222222333346789999999964210 0 11122222222 123445
Q ss_pred EEEEcCchhhhhh-c----CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCc
Q 043647 315 ILVTTCSTDVALT-V----GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLP 379 (1096)
Q Consensus 315 iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 379 (1096)
||.||-.++.... + .-...+.++..+.++-.++|..+.-. ......-+ ...|++.+.|+-
T Consensus 351 VIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~-~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 351 VMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS-MSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp EEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT-SCBCSSCC----HHHHHHHCCSCC
T ss_pred EEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcC-CCCCCCCC----HHHHHHHCCCCC
Confidence 6667754432211 1 22357888888888888999877632 11111122 245677787753
No 230
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.0027 Score=70.72 Aligned_cols=176 Identities=14% Similarity=0.090 Sum_probs=93.6
Q ss_pred CccccchHHHHHHHHHHhc----CC----CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHH
Q 043647 178 PAVFGRDEDKAKILEMVLR----DE----PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILR 249 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~----~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~ 249 (1096)
.++.|-++.+++|.+.+.. ++ .+-...+-|.++|++|.|||.+|+++++..... .+.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~----f~~v~~s~l~~--- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT----FLKLAAPQLVQ--- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE----EEEEEGGGGCS---
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC----EEEEehhhhhh---
Confidence 4578998888888765421 11 022345778999999999999999999864331 22333222110
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHH-HHHhCCCcEEEEEecCCCC-----Ch-----hh----HHHhhcccCCC--CCC
Q 043647 250 ITKSILESITFSPNSLKDLNQIQVQL-REAVAGKRFLIVLDDVWSK-----NY-----SL----WNTLKSPFRAG--ASG 312 (1096)
Q Consensus 250 ~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~~-----~~-----~~----~~~l~~~l~~~--~~g 312 (1096)
. . ..+.+...+.+ ...-+..+++|++|+++.. .. .. ...+...+... ..+
T Consensus 254 -----------~-~-vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 320 (434)
T 4b4t_M 254 -----------M-Y-IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDR 320 (434)
T ss_dssp -----------S-C-SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCS
T ss_pred -----------c-c-cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCC
Confidence 0 0 01111222222 2222356899999998521 00 01 11233333322 234
Q ss_pred cEEEEEcCchhhhhh-c-C---CcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCC
Q 043647 313 SKILVTTCSTDVALT-V-G---TAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGL 378 (1096)
Q Consensus 313 s~iivTtR~~~v~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 378 (1096)
-.||.||..++.... + . -...+.++..+.++-.++|..+.-.- .....-+ ..+|++.+.|+
T Consensus 321 ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~-~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 321 VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKM-TTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp SEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHS-CBCSCCC----HHHHHHHCSSC
T ss_pred EEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCC-CCCCcCC----HHHHHHhCCCC
Confidence 456667765543321 1 1 12468888888888888887665221 1111112 24567777775
No 231
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.0092 Score=65.52 Aligned_cols=177 Identities=14% Similarity=0.088 Sum_probs=93.9
Q ss_pred CccccchHHHHHHHHHHhc----CC----CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHH
Q 043647 178 PAVFGRDEDKAKILEMVLR----DE----PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILR 249 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~----~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~ 249 (1096)
.++.|-++.+++|.+.+.- ++ .+-...+-|.++|++|.|||.||+++++..... .+.++.+.-.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~----fi~v~~s~l~s--- 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT----FLRIVGSELIQ--- 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE----EEEEESGGGCC---
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC----EEEEEHHHhhh---
Confidence 3577888888877665422 11 022345779999999999999999999864332 12232221100
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHH-HHHHhCCCcEEEEEecCCCCCh--------------hhHHHhhcccCC--CCCC
Q 043647 250 ITKSILESITFSPNSLKDLNQIQVQ-LREAVAGKRFLIVLDDVWSKNY--------------SLWNTLKSPFRA--GASG 312 (1096)
Q Consensus 250 ~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~g 312 (1096)
.. ..+.+...+. ....-+..+++|++|+++.... .....+...+.. ...+
T Consensus 255 ------------k~-vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ 321 (437)
T 4b4t_I 255 ------------KY-LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGD 321 (437)
T ss_dssp ------------SS-SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSS
T ss_pred ------------cc-CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCC
Confidence 00 1112222222 2222346789999999864200 011122222221 2234
Q ss_pred cEEEEEcCchhhhhh-c-CC---cceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCc
Q 043647 313 SKILVTTCSTDVALT-V-GT---AEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLP 379 (1096)
Q Consensus 313 s~iivTtR~~~v~~~-~-~~---~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 379 (1096)
..||.||-.++.... + .. ...+.++.-+.++-.++|..+.-. .....+.++ ..|++.+.|+-
T Consensus 322 ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~-~~l~~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK-MNLSEDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT-SCBCSCCCH----HHHHHHCCSCC
T ss_pred EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC-CCCCCcCCH----HHHHHhCCCCC
Confidence 466677765544322 1 11 245778888888888888877632 111111222 45677777653
No 232
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.78 E-value=0.0016 Score=68.85 Aligned_cols=156 Identities=17% Similarity=0.135 Sum_probs=79.2
Q ss_pred CccccchHHHHHHHHHHhc---CCC----CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHH
Q 043647 178 PAVFGRDEDKAKILEMVLR---DEP----TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~---~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 250 (1096)
.+++|.++.++++.+.+.. .+. +....+-+.|+|++|+|||++|+++++......+ .+..+.-.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~----~v~~~~~~----- 81 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFF----SMGGSSFI----- 81 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCC----CCCSCTTT-----
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE----EechHHHH-----
Confidence 4688998877777765531 000 0011233779999999999999999875432211 11111100
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCCh---------------hhHHHhhcccCCC---CCC
Q 043647 251 TKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNY---------------SLWNTLKSPFRAG---ASG 312 (1096)
Q Consensus 251 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---------------~~~~~l~~~l~~~---~~g 312 (1096)
....+. .......+ +......+..+|+||+++.-.. .....+...+... ...
T Consensus 82 -----~~~~~~--~~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (268)
T 2r62_A 82 -----EMFVGL--GASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAP 151 (268)
T ss_dssp -----TSCSSS--CSSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSC
T ss_pred -----Hhhcch--HHHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCC
Confidence 001111 01111111 2222234668999999954211 0122233322211 122
Q ss_pred cEEEEEcCchhhhh-h-cC---CcceeeCCCCChHhHHHHHHHhh
Q 043647 313 SKILVTTCSTDVAL-T-VG---TAEYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 313 s~iivTtR~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~a 352 (1096)
..||.||....... . .. -...+.++..+.++-.+++...+
T Consensus 152 v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 152 VIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred EEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 45666776553211 1 11 12457888888888888887765
No 233
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.77 E-value=0.00047 Score=68.16 Aligned_cols=114 Identities=16% Similarity=0.087 Sum_probs=80.4
Q ss_pred cccCcCceeecccchhhhhhhhccchhhhhhhhcCCCCcceEEEeccccccc-----CCCCcCCCCccceeecccccccc
Q 043647 519 FHEVEHLRTFLPVLSYEIRLLTRYITDVVLSNLLPKFTKLRVLSLKKYYITE-----LPHSIGDLKHLRYINLSETMIRC 593 (1096)
Q Consensus 519 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~-----lp~~i~~l~~Lr~L~L~~~~i~~ 593 (1096)
+...+.++.+........ .......+...+...+.|++|+|++|.+.. +...+.....|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i----~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNI----PVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HTTCTTCCEEECTTCTTC----CHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HhcCCCCCEEEecCCCCC----CHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 344566666655431010 001122345567788999999999999763 44555667889999999999874
Q ss_pred -----cccccccCCCCcEEec--cCcccCcc-----cCccccCCCCCceEEecccc
Q 043647 594 -----LPESICSLCNLQFLIL--RGCYRLKK-----LPSNLRNLINLRHLVVTYVD 637 (1096)
Q Consensus 594 -----lp~~i~~L~~L~~L~L--~~~~~l~~-----lp~~i~~l~~L~~L~l~~~~ 637 (1096)
+...+...++|++|+| ++| .+.. +...+...++|++|++++|.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 5778888899999999 665 4543 44556777999999999886
No 234
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.65 E-value=0.0056 Score=66.91 Aligned_cols=151 Identities=13% Similarity=0.121 Sum_probs=82.5
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhc
Q 043647 179 AVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESI 258 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 258 (1096)
.++|+++.++.+...+... .-+.++|++|+|||++|+.+.+.... . ...+.+.......++.. ..
T Consensus 28 ~i~g~~~~~~~l~~~l~~~-------~~vll~G~pGtGKT~la~~la~~~~~-~---~~~i~~~~~~~~~~l~g----~~ 92 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG-------GHILLEGVPGLAKTLSVNTLAKTMDL-D---FHRIQFTPDLLPSDLIG----TM 92 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT-------CCEEEESCCCHHHHHHHHHHHHHTTC-C---EEEEECCTTCCHHHHHE----EE
T ss_pred ceeCcHHHHHHHHHHHHcC-------CeEEEECCCCCcHHHHHHHHHHHhCC-C---eEEEecCCCCChhhcCC----ce
Confidence 5789999999988888653 24889999999999999999874321 1 22233333333332211 11
Q ss_pred cCCCCCCCcHHHHHHHHHHHhCC--CcEEEEEecCCCCChhhHHHhhcccCC-----------CCCCcEEEEEcCchh--
Q 043647 259 TFSPNSLKDLNQIQVQLREAVAG--KRFLIVLDDVWSKNYSLWNTLKSPFRA-----------GASGSKILVTTCSTD-- 323 (1096)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~-----------~~~gs~iivTtR~~~-- 323 (1096)
...... .... .-.+ ...++++|++..........+...+.. ......|+.|+....
T Consensus 93 ~~~~~~-~~~~--------~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~ 163 (331)
T 2r44_A 93 IYNQHK-GNFE--------VKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQE 163 (331)
T ss_dssp EEETTT-TEEE--------EEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCS
T ss_pred eecCCC-CceE--------eccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCccc
Confidence 000000 0000 0001 135899999977655544444333221 122345555554221
Q ss_pred ----hhhh-cCCcc-eeeCCCCChHhHHHHHHHhhc
Q 043647 324 ----VALT-VGTAE-YYNLKLLSDDDCWSVFVKHAF 353 (1096)
Q Consensus 324 ----v~~~-~~~~~-~~~l~~L~~~~~~~lf~~~a~ 353 (1096)
+... ..... .+.++..+.++-.+++.+.+.
T Consensus 164 ~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 164 GTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred CcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 1111 11112 478888999999998888763
No 235
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.59 E-value=0.0048 Score=75.95 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=64.3
Q ss_pred CccccchHHHHHHHHHHhcCC----CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDE----PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKS 253 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 253 (1096)
..++|.++.++.+...+.... ........+.++|++|+|||++|+.+.+... ...+.++++.-.+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~----~~~~~i~~s~~~~~~~---- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG----IELLRFDMSEYMERHT---- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT----CEEEEEEGGGCSSSSC----
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc----CCEEEEechhhcchhh----
Confidence 358899998888877764321 1122345789999999999999999987531 1223344433211100
Q ss_pred HHHhccCCCCCCCcH---HHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccC
Q 043647 254 ILESITFSPNSLKDL---NQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFR 307 (1096)
Q Consensus 254 i~~~l~~~~~~~~~~---~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 307 (1096)
...+.+........ ..+...++ +....+|+||++........+.+...+.
T Consensus 530 -~~~l~g~~~g~~g~~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le 582 (758)
T 1r6b_X 530 -VSRLIGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNILLQVMD 582 (758)
T ss_dssp -CSSSCCCCSCSHHHHHTTHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred -HhhhcCCCCCCcCccccchHHHHHH---hCCCcEEEEeCccccCHHHHHHHHHHhc
Confidence 00111111111000 11222222 2446799999998776665665555443
No 236
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.58 E-value=0.0014 Score=69.20 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=45.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEe--cCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCC
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCV--SDDFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAG 281 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 281 (1096)
-+++.|+|++|+||||||.++... .-..++|+++ .+..+. . ..+.++....+.+.+..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~----~G~~VlyIs~~~eE~v~~-------------~---~~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA----LGGKDKYATVRFGEPLSG-------------Y---NTDFNVFVDDIARAMLQ 182 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH----HHTTSCCEEEEBSCSSTT-------------C---BCCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh----CCCCEEEEEecchhhhhh-------------h---hcCHHHHHHHHHHHHhh
Confidence 367889999999999999998864 1123556666 222110 0 03456666666666655
Q ss_pred CcEEEEEecCCC
Q 043647 282 KRFLIVLDDVWS 293 (1096)
Q Consensus 282 kr~LlVlDdv~~ 293 (1096)
.+ +||+|++..
T Consensus 183 ~~-LLVIDsI~a 193 (331)
T 2vhj_A 183 HR-VIVIDSLKN 193 (331)
T ss_dssp CS-EEEEECCTT
T ss_pred CC-EEEEecccc
Confidence 56 999999943
No 237
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.47 E-value=0.026 Score=60.14 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
...+.+.++|++|+|||+||+++++..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345688899999999999999999864
No 238
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.38 E-value=0.02 Score=68.94 Aligned_cols=177 Identities=14% Similarity=0.099 Sum_probs=96.0
Q ss_pred ccccchHHHHHHHHHHh----cCC----CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHH
Q 043647 179 AVFGRDEDKAKILEMVL----RDE----PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~----~~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 250 (1096)
++.|-++.+++|.+++. .++ -+-...+-|.++|++|+|||+||++++++.... .+.|+.+
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~----~~~v~~~-------- 272 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGP-------- 272 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE----EEEEEHH--------
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe----EEEEEhH--------
Confidence 46788887777766542 211 122346779999999999999999999864331 2333321
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCCh-------h----hHHHhhcccCCC--CCCcEEEE
Q 043647 251 TKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNY-------S----LWNTLKSPFRAG--ASGSKILV 317 (1096)
Q Consensus 251 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------~----~~~~l~~~l~~~--~~gs~iiv 317 (1096)
++... ........+........+..+.+|+||+++.--. . ....+...+... ..+--||.
T Consensus 273 --~l~sk-----~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIa 345 (806)
T 3cf2_A 273 --EIMSK-----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA 345 (806)
T ss_dssp --HHHSS-----CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEE
T ss_pred --Hhhcc-----cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEE
Confidence 11111 1111222333344444567799999999964210 1 112222222111 12344566
Q ss_pred EcCchhhh-hhcC----CcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCc
Q 043647 318 TTCSTDVA-LTVG----TAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLP 379 (1096)
Q Consensus 318 TtR~~~v~-~~~~----~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 379 (1096)
||...+.. ..+. -...+.+...+.++-.++|..+.-+ .....+.+ ..+|++++.|.-
T Consensus 346 aTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~-~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN-MKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp ECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSS-SEECTTCC----HHHHHHHCCSCC
T ss_pred ecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcC-CCCCcccC----HHHHHHhcCCCC
Confidence 66554322 1111 2246888888888888888776522 11111122 346777887764
No 239
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.26 E-value=0.016 Score=58.95 Aligned_cols=85 Identities=21% Similarity=0.194 Sum_probs=51.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccC-----------CC-CCCCcHHHH
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITF-----------SP-NSLKDLNQI 271 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----------~~-~~~~~~~~~ 271 (1096)
-.++.|+|.+|+||||+|..+.. ..-..++|++.....+..++.+ +....+. .. ....+..+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRRV 94 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHHH
Confidence 46899999999999999998886 2224577887766555554443 3333221 11 111222334
Q ss_pred HHHHHHHhCCCcEEEEEecCCC
Q 043647 272 QVQLREAVAGKRFLIVLDDVWS 293 (1096)
Q Consensus 272 ~~~l~~~l~~kr~LlVlDdv~~ 293 (1096)
...++...+.+.-+||+|.+..
T Consensus 95 ~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 95 IGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHhhcCCCEEEEcCcHH
Confidence 4445555544567889998743
No 240
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.20 E-value=0.014 Score=72.42 Aligned_cols=134 Identities=17% Similarity=0.240 Sum_probs=71.7
Q ss_pred ccccchHHHHHHHHHHhcCC----CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHH
Q 043647 179 AVFGRDEDKAKILEMVLRDE----PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSI 254 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 254 (1096)
.++|.+..++.+...+.... ........+.|+|+.|+|||++|+.+.+...... ...+.++++.-.... .
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~-~~~i~i~~~~~~~~~-----~ 632 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE-EAMIRIDMTEYMEKH-----A 632 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG-GGEEEECTTTCCSSG-----G
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC-CcEEEEechhccchh-----H
Confidence 57899998888887775321 1122346889999999999999999987532211 123334443322110 0
Q ss_pred HHhccCCCC---CCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCCC-----------CCcEEEEEcC
Q 043647 255 LESITFSPN---SLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGA-----------SGSKILVTTC 320 (1096)
Q Consensus 255 ~~~l~~~~~---~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR 320 (1096)
...+.+... .......+...++. ...-+|+||++..........+...+..+. .+..||+||.
T Consensus 633 ~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn 709 (854)
T 1qvr_A 633 VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSN 709 (854)
T ss_dssp GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECC
T ss_pred HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecC
Confidence 011111100 00001112222222 334689999998776666666666555331 2344777776
Q ss_pred c
Q 043647 321 S 321 (1096)
Q Consensus 321 ~ 321 (1096)
.
T Consensus 710 ~ 710 (854)
T 1qvr_A 710 L 710 (854)
T ss_dssp T
T ss_pred c
Confidence 4
No 241
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.19 E-value=0.012 Score=68.67 Aligned_cols=164 Identities=15% Similarity=0.130 Sum_probs=76.6
Q ss_pred CccccchHHHHHHHHHHhcCC-CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDE-PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
.+++|.++-...+.+.+.-.. .......++.++|++|+||||+|+.++..... .| .-+.++...+...+......
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~---~~i~~~~~~~~~~~~g~~~~ 156 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR-KF---VRISLGGVRDESEIRGHRRT 156 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC-EE---EEECCCC-------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC-Ce---EEEEecccchhhhhhhHHHH
Confidence 357888877776655432110 01113568999999999999999999875322 11 12222221111111111000
Q ss_pred hccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCChh----hHHHhhcccCCCC---------------CCcEEEE
Q 043647 257 SITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKNYS----LWNTLKSPFRAGA---------------SGSKILV 317 (1096)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~iiv 317 (1096)
.++. ....+...+.. .....-+++||+++..... ....+...+.... ....||.
T Consensus 157 ~ig~------~~~~~~~~~~~-a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ 229 (543)
T 3m6a_A 157 YVGA------MPGRIIQGMKK-AGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIA 229 (543)
T ss_dssp -------------CHHHHHHT-TCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEE
T ss_pred Hhcc------CchHHHHHHHH-hhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEe
Confidence 1110 00111111221 1223348889999764322 1233333332111 2345666
Q ss_pred EcCchhhhh-h-cCCcceeeCCCCChHhHHHHHHHhh
Q 043647 318 TTCSTDVAL-T-VGTAEYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 318 TtR~~~v~~-~-~~~~~~~~l~~L~~~~~~~lf~~~a 352 (1096)
||....... . ......+.+.+++.++-.+++..+.
T Consensus 230 ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 230 TANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp ECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred ccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 665433110 0 0111468899999998888887654
No 242
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.17 E-value=0.06 Score=56.51 Aligned_cols=153 Identities=13% Similarity=0.089 Sum_probs=79.7
Q ss_pred ccccchHHHHHHHHHHhcC---------CCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHH
Q 043647 179 AVFGRDEDKAKILEMVLRD---------EPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILR 249 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~---------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~ 249 (1096)
++.|-++.++++.+.+... -.-..... +.|+|++|+||||||+.++..... ..+++....-.+.
T Consensus 11 di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~-- 83 (274)
T 2x8a_A 11 DIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNM-- 83 (274)
T ss_dssp -CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSS--
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhh--
Confidence 5778877777776644211 00011122 999999999999999999875322 1233332211100
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHH-hCCCcEEEEEecCCCCCh-----------hhHHHhhcccCCC--CCCcEE
Q 043647 250 ITKSILESITFSPNSLKDLNQIQVQLREA-VAGKRFLIVLDDVWSKNY-----------SLWNTLKSPFRAG--ASGSKI 315 (1096)
Q Consensus 250 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~~--~~gs~i 315 (1096)
...+.......+.+. -...+.++++|+++.... .....+...+..+ ....-+
T Consensus 84 --------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ 149 (274)
T 2x8a_A 84 --------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFI 149 (274)
T ss_dssp --------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEE
T ss_pred --------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEE
Confidence 000011111122222 134578999999964210 1112222223222 123456
Q ss_pred EEEcCchhhhhhc-----CCcceeeCCCCChHhHHHHHHHhh
Q 043647 316 LVTTCSTDVALTV-----GTAEYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 316 ivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a 352 (1096)
+.+|..+++.... .-...+.++..+.++-.+++....
T Consensus 150 ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 150 MAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 6677666543221 223567888888888888887765
No 243
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.05 E-value=0.0051 Score=66.01 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccc-ccccCcEEEEEe
Q 043647 184 DEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKA-VEMFNLRSWVCV 241 (1096)
Q Consensus 184 ~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~f~~~~wv~~ 241 (1096)
....+.+.+++..... .....+.|+|++|+|||+||+++++... ...+ .+.++++
T Consensus 134 ~~~~~~~~~~i~~~~~--~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~-~v~~~~~ 189 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPS--AEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGV-STTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHCSC--SSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCC-CEEEEEH
T ss_pred HHHHHHHHHHHHhccc--cCCceEEEECCCCCCHHHHHHHHHHHHHHhcCC-cEEEEEH
Confidence 3344455566643221 1236788999999999999999998654 3222 3445544
No 244
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.03 E-value=0.15 Score=58.22 Aligned_cols=174 Identities=16% Similarity=0.118 Sum_probs=90.5
Q ss_pred CccccchHHHHHHHHHH---hcCCC----CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHH
Q 043647 178 PAVFGRDEDKAKILEMV---LRDEP----TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L---~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 250 (1096)
.+++|.++.+.++.+.. ..... +..-.+-+.|+|++|+||||||++++..... ..+.++.+.-.+
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~----~~i~i~g~~~~~---- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV----PFITASGSDFVE---- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC----CEEEEEGGGGTS----
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC----CEEEEehhHHHH----
Confidence 46889987766665543 22110 0111233899999999999999999975432 123333221100
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHhCC----CcEEEEEecCCCCC----------hhh----HHHhhcccCCC--C
Q 043647 251 TKSILESITFSPNSLKDLNQIQVQLREAVAG----KRFLIVLDDVWSKN----------YSL----WNTLKSPFRAG--A 310 (1096)
Q Consensus 251 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~----kr~LlVlDdv~~~~----------~~~----~~~l~~~l~~~--~ 310 (1096)
. -.......++..++. ...++++|+++... ... ...+...+..+ .
T Consensus 103 ----------~-----~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~ 167 (499)
T 2dhr_A 103 ----------M-----FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 167 (499)
T ss_dssp ----------S-----CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS
T ss_pred ----------h-----hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC
Confidence 0 001112233333332 35799999995321 111 22333333322 2
Q ss_pred CCcEEEEEcCchhhhhh-c----CCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCc
Q 043647 311 SGSKILVTTCSTDVALT-V----GTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLP 379 (1096)
Q Consensus 311 ~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 379 (1096)
.+..|+.||..+++... + .-...+.++..+.++-.+++..++-+ ....... ....|+..+.|..
T Consensus 168 ~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~-~~l~~dv----~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG-KPLAEDV----DLALLAKRTPGFV 236 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSS-SCCCCSS----TTHHHHTTSCSCC
T ss_pred ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhc-CCCChHH----HHHHHHHhcCCCC
Confidence 33456666766654321 1 12246788888888888888776522 1111111 1235677777765
No 245
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.80 E-value=0.054 Score=56.33 Aligned_cols=156 Identities=17% Similarity=0.106 Sum_probs=77.7
Q ss_pred CccccchHHHHHHHHHHhcCCC-------CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEP-------TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 250 (1096)
.+++|.++.+.++.+....-.. +-.-.+-+.|+|+.|+||||||+.++..... ..+.+.. .+
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~----~~i~~~~------~~- 84 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV----PFITASG------SD- 84 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC----CEEEEEH------HH-
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEEeeH------HH-
Confidence 4678887666655443321000 0001122899999999999999999975431 1222221 11
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCC----------Chhh----HHHhhcccCCCC--CCcE
Q 043647 251 TKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSK----------NYSL----WNTLKSPFRAGA--SGSK 314 (1096)
Q Consensus 251 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------~~~~----~~~l~~~l~~~~--~gs~ 314 (1096)
+..... ......+...++..-.....++++|+++.. .... ...+...+..+. ...-
T Consensus 85 ---~~~~~~-----~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i 156 (254)
T 1ixz_A 85 ---FVEMFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIV 156 (254)
T ss_dssp ---HHHSCT-----THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEE
T ss_pred ---HHHHHh-----hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEE
Confidence 111100 000111222222222345689999999321 0011 122332332222 2234
Q ss_pred EEEEcCchhhhhhc-----CCcceeeCCCCChHhHHHHHHHhh
Q 043647 315 ILVTTCSTDVALTV-----GTAEYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 315 iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a 352 (1096)
++.||..++..... .-...+.++..+.++-.+++...+
T Consensus 157 ~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 157 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp EEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred EEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 55566665543211 123467888888888888887665
No 246
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.79 E-value=0.043 Score=60.97 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
..+.++|++|+|||++|+.+++..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998753
No 247
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.63 E-value=0.061 Score=56.78 Aligned_cols=178 Identities=16% Similarity=0.089 Sum_probs=87.1
Q ss_pred CccccchHHHHHHHHHHhcCCC-------CCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDEP-------TDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRI 250 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 250 (1096)
.+++|.++.+.++.+....-.. +-.-.+-+.|+|+.|+||||||+.++..... ..+.+... .+
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~----~~i~~~~~------~~ 109 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV----PFITASGS------DF 109 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC----CEEEEEHH------HH
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC----CEEEecHH------HH
Confidence 4688988766665543321000 0001122899999999999999999875431 22233211 11
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCC----------ChhhH----HHhhcccCCCCC--CcE
Q 043647 251 TKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSK----------NYSLW----NTLKSPFRAGAS--GSK 314 (1096)
Q Consensus 251 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------~~~~~----~~l~~~l~~~~~--gs~ 314 (1096)
..... ......+....+..-.....++|+|++... ....+ ..+...+..+.. ...
T Consensus 110 ----~~~~~-----~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i 180 (278)
T 1iy2_A 110 ----VEMFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIV 180 (278)
T ss_dssp ----HHSTT-----THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEE
T ss_pred ----HHHHh-----hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEE
Confidence 11100 000111222222222345689999999421 00111 223323332222 234
Q ss_pred EEEEcCchhhhhh-----cCCcceeeCCCCChHhHHHHHHHhhcCCCCCCCCcchhHHHHHHHHHhCCCc
Q 043647 315 ILVTTCSTDVALT-----VGTAEYYNLKLLSDDDCWSVFVKHAFEKRDVGLHRHMGSIRKKVVQKCRGLP 379 (1096)
Q Consensus 315 iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 379 (1096)
++.||..+++... ..-...+.++..+.++-.+++..++-+ ....... ....++..+.|..
T Consensus 181 ~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~-~~~~~~~----~~~~la~~~~G~~ 245 (278)
T 1iy2_A 181 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG-KPLAEDV----DLALLAKRTPGFV 245 (278)
T ss_dssp EEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT-SCBCTTC----CHHHHHHTCTTCC
T ss_pred EEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc-CCCCccc----CHHHHHHHcCCCC
Confidence 4556665543221 122356888888888888888776622 1111111 1235667777654
No 248
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.53 E-value=0.043 Score=67.20 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=83.2
Q ss_pred CccccchHHHHHHHHHHhc----CC----CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHH
Q 043647 178 PAVFGRDEDKAKILEMVLR----DE----PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILR 249 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~----~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~ 249 (1096)
.+++|.++.++++.+++.. .+ -.-.....|.|+|++|+||||||+.+...... .| +.++...
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~-~~---i~v~~~~------ 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-FF---FLINGPE------ 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC-EE---EEEEHHH------
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC-cE---EEEEchH------
Confidence 4588999988888877742 00 01123457999999999999999999875321 11 2332211
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCCCC-------hh----hHHHhhcccCCC--CCCcEEE
Q 043647 250 ITKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWSKN-------YS----LWNTLKSPFRAG--ASGSKIL 316 (1096)
Q Consensus 250 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------~~----~~~~l~~~l~~~--~~gs~ii 316 (1096)
+. .. ........+...+.........++++|++.... .+ ....+...+... ..+..+|
T Consensus 274 ----l~----~~-~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI 344 (806)
T 1ypw_A 274 ----IM----SK-LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (806)
T ss_dssp ----HS----SS-STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEE
T ss_pred ----hh----hh-hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEe
Confidence 10 00 000111222233333334567899999994321 00 112222222211 1234566
Q ss_pred EEcCchhhh-hhcC----CcceeeCCCCChHhHHHHHHHhh
Q 043647 317 VTTCSTDVA-LTVG----TAEYYNLKLLSDDDCWSVFVKHA 352 (1096)
Q Consensus 317 vTtR~~~v~-~~~~----~~~~~~l~~L~~~~~~~lf~~~a 352 (1096)
.||..+... ..+. -...+.+...+.++-.+++...+
T Consensus 345 ~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred cccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 666554322 1111 12356788888888888887665
No 249
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.43 E-value=0.033 Score=58.37 Aligned_cols=84 Identities=12% Similarity=0.179 Sum_probs=54.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccc-cCcEEEEEecCccChHHHHHHHHHhccCCCC-----CCCcHHHH-HHHHHH
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEM-FNLRSWVCVSDDFDILRITKSILESITFSPN-----SLKDLNQI-QVQLRE 277 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-~~~l~~ 277 (1096)
.++-|.|++|+||||||.++........ -..++||+....++.. .+++++.... ...+.++. ...+..
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 3789999999999999988776533221 2468899887777653 2566665422 12345554 333333
Q ss_pred H--h-CCCcEEEEEecCCC
Q 043647 278 A--V-AGKRFLIVLDDVWS 293 (1096)
Q Consensus 278 ~--l-~~kr~LlVlDdv~~ 293 (1096)
. + +++.-+||+|-+..
T Consensus 104 l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHTCCTTCCEEEEEECSTT
T ss_pred HHHhhccCceEEEEecccc
Confidence 2 2 45678999999854
No 250
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.42 E-value=0.081 Score=51.21 Aligned_cols=20 Identities=40% Similarity=0.722 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 043647 205 SLIPIVGMAGVGKTTLARVA 224 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v 224 (1096)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 251
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.40 E-value=0.092 Score=57.42 Aligned_cols=157 Identities=10% Similarity=-0.048 Sum_probs=98.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHH-hCCC
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLREA-VAGK 282 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k 282 (1096)
.++..++|..|.||++.|+.+.+......|+....+.+... .+..++...+... +-+.
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~plf~~ 76 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN---------------------TDWNAIFSLCQAMSLFAS 76 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT---------------------CCHHHHHHHHHHHHHCCS
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC---------------------CCHHHHHHHhcCcCCccC
Confidence 56899999999999999988876432223332111222211 2344444444322 3567
Q ss_pred cEEEEEecCCC-CChhhHHHhhcccCCCCCCcEEEEEcCc-------hhhhhhc-CCcceeeCCCCChHhHHHHHHHhhc
Q 043647 283 RFLIVLDDVWS-KNYSLWNTLKSPFRAGASGSKILVTTCS-------TDVALTV-GTAEYYNLKLLSDDDCWSVFVKHAF 353 (1096)
Q Consensus 283 r~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtR~-------~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~ 353 (1096)
+-++|+|++.. -....++.+...+.....++.+|++|.. ..+...+ .....++..+++.++....+.+.+-
T Consensus 77 ~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~ 156 (343)
T 1jr3_D 77 RQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAK 156 (343)
T ss_dssp CEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHH
Confidence 78889999966 4446677777766655557777766643 2333332 2346788999999998888877663
Q ss_pred CCCCCCCCcchhHHHHHHHHHhCCCchhHHHH
Q 043647 354 EKRDVGLHRHMGSIRKKVVQKCRGLPLAAETL 385 (1096)
Q Consensus 354 ~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 385 (1096)
..+ . .-..+.+..+++.++|.+.++...
T Consensus 157 ~~g-~---~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 157 QLN-L---ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HTT-C---EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HcC-C---CCCHHHHHHHHHHhchHHHHHHHH
Confidence 211 1 122466778999999988776643
No 252
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.35 E-value=0.031 Score=60.62 Aligned_cols=85 Identities=24% Similarity=0.232 Sum_probs=54.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCC-----CCCcHHHHHHHHHH
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPN-----SLKDLNQIQVQLRE 277 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 277 (1096)
.-.++.|+|++|+||||||..+...... .-..++|++....++.. .+++++.... ...+.++....+..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~-~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK-MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 3579999999999999999988865332 12347788776666543 3444443211 22445555555555
Q ss_pred HhC-CCcEEEEEecCCC
Q 043647 278 AVA-GKRFLIVLDDVWS 293 (1096)
Q Consensus 278 ~l~-~kr~LlVlDdv~~ 293 (1096)
.++ .+.-++|+|.+..
T Consensus 134 l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHTSCCSEEEEECTTT
T ss_pred HhhhcCCCeEEehHhhh
Confidence 543 4566899999843
No 253
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.28 E-value=0.013 Score=58.98 Aligned_cols=113 Identities=12% Similarity=-0.016 Sum_probs=62.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCC--CCCcHHHHHHHHHHHhCC
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPN--SLKDLNQIQVQLREAVAG 281 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~ 281 (1096)
-.++.|+|..|+||||++..+......... .++.+....+ .. ....++..++.... ......++...+.+.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~-kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~ 87 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADV-KYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFN 87 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC-CEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCC-EEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhC
Confidence 468999999999999999877765433222 2333332222 11 22234444443221 122334455555554544
Q ss_pred CcE-EEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchh
Q 043647 282 KRF-LIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTD 323 (1096)
Q Consensus 282 kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 323 (1096)
.++ +||+|.+..-..+..+.+. .+.+ .|-.||+|-+..+
T Consensus 88 ~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 88 DETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp TTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSBC
T ss_pred CCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEecccc
Confidence 444 9999999654333334332 2222 2678999987544
No 254
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.28 E-value=0.032 Score=57.57 Aligned_cols=88 Identities=14% Similarity=0.131 Sum_probs=50.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccc-----ccCcEEEEEecCccChHHHHHHHHHhccCCCC---------CCCcHH
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVE-----MFNLRSWVCVSDDFDILRITKSILESITFSPN---------SLKDLN 269 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 269 (1096)
-.++.|+|++|+||||||+.+....... .-..++|+.....+...++. +++..++.... ...+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 4689999999999999999888642221 12467888776654544432 33444432210 111222
Q ss_pred H---HHHHHHHHhC-CCcEEEEEecCC
Q 043647 270 Q---IQVQLREAVA-GKRFLIVLDDVW 292 (1096)
Q Consensus 270 ~---~~~~l~~~l~-~kr~LlVlDdv~ 292 (1096)
+ ....+.+.+. .+.-+||+|.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 2 2223444442 456788888874
No 255
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.16 E-value=0.06 Score=58.66 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=39.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcccccc-----ccCcEEEEEecCccChHHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVE-----MFNLRSWVCVSDDFDILRITKSILESIT 259 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 259 (1096)
.-.++.|+|.+|+||||+|..++...... .-..++|++....++..++.+ ++..++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 45799999999999999998887653221 124688998887777666543 344443
No 256
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.97 E-value=0.053 Score=59.27 Aligned_cols=83 Identities=18% Similarity=0.137 Sum_probs=54.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCC-----CCCcHHHHHHHHHHH
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPN-----SLKDLNQIQVQLREA 278 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~ 278 (1096)
-.++.|.|.+|+||||+|..+...... .-..++|++....++.. .+..++.... ...+.+++...+...
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~-~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l 147 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQK-AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELL 147 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHH-CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHH
Confidence 468899999999999999888765322 22468899887766643 2344443211 223556666666665
Q ss_pred hC-CCcEEEEEecCC
Q 043647 279 VA-GKRFLIVLDDVW 292 (1096)
Q Consensus 279 l~-~kr~LlVlDdv~ 292 (1096)
.+ ++.-+||+|.+.
T Consensus 148 ~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 148 VRSGAIDVVVVDSVA 162 (366)
T ss_dssp HTTTCCSEEEEECTT
T ss_pred HhcCCCCEEEEeChH
Confidence 54 345689999984
No 257
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.96 E-value=0.039 Score=56.52 Aligned_cols=114 Identities=13% Similarity=0.074 Sum_probs=60.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCC---------------------
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPN--------------------- 263 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--------------------- 263 (1096)
.+++|+|++|+|||||++.+...... .-..+.|+.... ...++...+. .++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~-~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLR-DGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQW 99 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHH-HTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH-CCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCcee
Confidence 58999999999999999988854322 112456665433 3444433332 3221100
Q ss_pred --CCCcHHHHHHHHHHHhC---CCcEEEEEecCCCC---ChhhHHHhhcccCC--CCCCcEEEEEcCch
Q 043647 264 --SLKDLNQIQVQLREAVA---GKRFLIVLDDVWSK---NYSLWNTLKSPFRA--GASGSKILVTTCST 322 (1096)
Q Consensus 264 --~~~~~~~~~~~l~~~l~---~kr~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~iivTtR~~ 322 (1096)
...+..++...+.+.+. -++.++|+|..... +......+...+.. ...|..||++|...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 100 SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 01144555555544432 23349999998521 22222333332221 12467888888764
No 258
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.88 E-value=0.041 Score=59.52 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=39.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccc-c----cCcEEEEEecCccChHHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVE-M----FNLRSWVCVSDDFDILRITKSILESIT 259 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~----f~~~~wv~~~~~~~~~~~~~~i~~~l~ 259 (1096)
-.++.|+|.+|+||||+|..+....... . -..++|++....++..++.+ ++..++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g 166 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALG 166 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhC
Confidence 4689999999999999998887653221 1 24688998887777666553 345554
No 259
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.86 E-value=0.027 Score=56.22 Aligned_cols=44 Identities=23% Similarity=0.200 Sum_probs=34.2
Q ss_pred cchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 182 GRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 182 gr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.|++.++++.+.+.... .....+|+|.|+.|+||||+++.+...
T Consensus 2 ~~~~~~~~l~~~~~~~~--~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK--TAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CHHHHHHHHHHHHHTSC--CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc--cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35667788888886542 234579999999999999999988763
No 260
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.81 E-value=0.058 Score=57.22 Aligned_cols=86 Identities=14% Similarity=0.094 Sum_probs=46.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecC-ccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCC
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSD-DFDILRITKSILESITFSPNSLKDLNQIQVQLREAVAGK 282 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 282 (1096)
..+++|+|.+|+||||++..+........=..+..+.... .....+.+....+..+.......+...+...+.. + .+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~-~~ 182 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F-SE 182 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-GG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-cC
Confidence 5699999999999999998887644321111344444322 1223333444444443322222233444444443 3 34
Q ss_pred cEEEEEecC
Q 043647 283 RFLIVLDDV 291 (1096)
Q Consensus 283 r~LlVlDdv 291 (1096)
.=++|+|-.
T Consensus 183 ~dlvIiDT~ 191 (296)
T 2px0_A 183 YDHVFVDTA 191 (296)
T ss_dssp SSEEEEECC
T ss_pred CCEEEEeCC
Confidence 457888944
No 261
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.68 E-value=0.039 Score=50.30 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=37.1
Q ss_pred EEEecccccc--cCCCCcCCCCccceeeccccccccccc-ccccCCCCcEEeccCc
Q 043647 560 VLSLKKYYIT--ELPHSIGDLKHLRYINLSETMIRCLPE-SICSLCNLQFLILRGC 612 (1096)
Q Consensus 560 ~L~L~~~~~~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~ 612 (1096)
+++.+++.++ .+|..+. .+|++|+|++|.|+.+|. .+..+.+|++|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 6777787777 7776543 367888888888888865 4566777777777775
No 262
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.62 E-value=0.063 Score=52.23 Aligned_cols=118 Identities=14% Similarity=0.026 Sum_probs=57.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecC---ccChHHHHHHHHHhcc--CCCC--CCCc----H---HH
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSD---DFDILRITKSILESIT--FSPN--SLKD----L---NQ 270 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~--~~~~--~~~~----~---~~ 270 (1096)
..|-|++..|.||||.|-...-......+ .+.++..-. ......++..+.-.+. +... ...+ . ..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~-rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGK-NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTC-CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 45667777779999999555543221111 233333222 2233344433310000 0011 1111 1 11
Q ss_pred HHHHHHHHhCCCc-EEEEEecCCC---CChhhHHHhhcccCCCCCCcEEEEEcCchh
Q 043647 271 IQVQLREAVAGKR-FLIVLDDVWS---KNYSLWNTLKSPFRAGASGSKILVTTCSTD 323 (1096)
Q Consensus 271 ~~~~l~~~l~~kr-~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 323 (1096)
.-...++.+.+.+ =|||||++-. ......+.+...+........||+|+|...
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 2233445555444 4999999822 122334455555555556779999999864
No 263
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.48 E-value=0.078 Score=57.70 Aligned_cols=84 Identities=20% Similarity=0.161 Sum_probs=54.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCC-----CCCcHHHHHHHHHHH
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPN-----SLKDLNQIQVQLREA 278 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~ 278 (1096)
-+++.|+|.+|+||||||..+...... .-..++|++....++.. .++.++.... ...+.++....+...
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~-~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l 134 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQA-AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADML 134 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 468999999999999999888764322 22457888887766543 2344443211 223455555555555
Q ss_pred hC-CCcEEEEEecCCC
Q 043647 279 VA-GKRFLIVLDDVWS 293 (1096)
Q Consensus 279 l~-~kr~LlVlDdv~~ 293 (1096)
.+ .+.-+||+|.+..
T Consensus 135 ~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 135 VRSGALDIIVIDSVAA 150 (349)
T ss_dssp HTTTCCSEEEEECGGG
T ss_pred HhcCCCCEEEEcChHh
Confidence 43 4566999999843
No 264
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.47 E-value=0.033 Score=59.95 Aligned_cols=97 Identities=14% Similarity=0.091 Sum_probs=52.7
Q ss_pred HHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCc-EEEEEecCccChHHHHHHHHHhccC----CC
Q 043647 188 AKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNL-RSWVCVSDDFDILRITKSILESITF----SP 262 (1096)
Q Consensus 188 ~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~----~~ 262 (1096)
-++++.+..-. .-..++|+|..|+|||||++.+.+.....+-+. ++++-+++.... ..++.+.+.. ..
T Consensus 162 iraID~~~pi~----rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~E---v~~~~~~~~~~vV~at 234 (422)
T 3ice_A 162 ARVLDLASPIG----RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEE---VTEMQRLVKGEVVAST 234 (422)
T ss_dssp HHHHHHHSCCB----TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHH---HHHHHTTCSSEEEEEC
T ss_pred ceeeeeeeeec----CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHH---HHHHHHHhCeEEEEeC
Confidence 35566664432 235799999999999999998876433222232 345666655322 1223333321 11
Q ss_pred CCCCcHHH-----HHHHHHHHh--CCCcEEEEEecC
Q 043647 263 NSLKDLNQ-----IQVQLREAV--AGKRFLIVLDDV 291 (1096)
Q Consensus 263 ~~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv 291 (1096)
.+...... ..-.+.+++ +|+.+||++||+
T Consensus 235 adep~~~r~~~a~~alt~AEyfrd~G~dVLil~Dsl 270 (422)
T 3ice_A 235 FDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSI 270 (422)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCc
Confidence 11111111 111122333 689999999998
No 265
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.46 E-value=0.36 Score=48.94 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
.+++|+|+.|.|||||.+.+..-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998643
No 266
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.45 E-value=0.17 Score=53.44 Aligned_cols=80 Identities=13% Similarity=0.061 Sum_probs=44.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccc--cCcEEEEEecCccChHHHHHHHHHhc------cCC-CCCCCcHHHHH
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAVEM--FNLRSWVCVSDDFDILRITKSILESI------TFS-PNSLKDLNQIQ 272 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~~l------~~~-~~~~~~~~~~~ 272 (1096)
....+|+|+|..|+||||||+.+........ ...+..|+...-+-.......+.... ... .....+.+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 4568999999999999999988876433211 22344434443333334444443321 111 13345566666
Q ss_pred HHHHHHhCC
Q 043647 273 VQLREAVAG 281 (1096)
Q Consensus 273 ~~l~~~l~~ 281 (1096)
..+.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 666665544
No 267
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.38 E-value=0.13 Score=54.89 Aligned_cols=99 Identities=13% Similarity=0.004 Sum_probs=53.0
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-ccCcEEEEEecCccChHHHHHH--HHHh
Q 043647 181 FGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVE-MFNLRSWVCVSDDFDILRITKS--ILES 257 (1096)
Q Consensus 181 vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~--i~~~ 257 (1096)
+|....+..+...+.... ......+|+|.|+.|+||||+|+.+..-.... .-..+..+....-+-....+.. +...
T Consensus 70 ~~~~~~l~~~~~~~l~~~-~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~ 148 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKP-EPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKR 148 (321)
T ss_dssp HHHHHHHHHHHHHHHTCC-CCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGG
T ss_pred hcchHHHHHHHHHHhccC-CCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhh
Confidence 455555666655554443 23457899999999999999998886532211 1112444444332222222221 0111
Q ss_pred ccCCCCCCCcHHHHHHHHHHHhCCC
Q 043647 258 ITFSPNSLKDLNQIQVQLREAVAGK 282 (1096)
Q Consensus 258 l~~~~~~~~~~~~~~~~l~~~l~~k 282 (1096)
.+ .....+.+.+...+.....++
T Consensus 149 ~g--~P~~~D~~~l~~~L~~L~~g~ 171 (321)
T 3tqc_A 149 KG--FPESYDMPSLLRVLNAIKSGQ 171 (321)
T ss_dssp TT--SGGGBCHHHHHHHHHHHHTTC
T ss_pred cc--CcccccHHHHHHHHHhhhccc
Confidence 11 123455666667776666665
No 268
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.33 E-value=0.037 Score=58.58 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 185 EDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 185 ~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..+++++..++..........+|.|.|++|+||||+|+.+...
T Consensus 14 ~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 14 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445555555544333445689999999999999999998763
No 269
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.31 E-value=0.083 Score=58.93 Aligned_cols=87 Identities=21% Similarity=0.214 Sum_probs=51.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCcc-ChHHHHHHHHHhcc--------CCCCCCCcHHH----H
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDF-DILRITKSILESIT--------FSPNSLKDLNQ----I 271 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~--------~~~~~~~~~~~----~ 271 (1096)
+.++|+|..|+||||||+.+..+....+-+..+++-+++.. +..++++++...=. ....+...... .
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~ 231 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALT 231 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHH
Confidence 36899999999999999988876443333456667676654 34455555543200 01111111111 0
Q ss_pred HHHHHHHh---CCCcEEEEEecC
Q 043647 272 QVQLREAV---AGKRFLIVLDDV 291 (1096)
Q Consensus 272 ~~~l~~~l---~~kr~LlVlDdv 291 (1096)
...+.+++ +++++|+++||+
T Consensus 232 ~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 232 GLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHHHHSCCEEEEEEECT
T ss_pred HHHHHHHHHHhcCCcEEEEeccH
Confidence 11233333 689999999999
No 270
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.30 E-value=0.077 Score=57.76 Aligned_cols=83 Identities=18% Similarity=0.132 Sum_probs=51.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCC-----CCCcHHHHHHHHHHH
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPN-----SLKDLNQIQVQLREA 278 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~ 278 (1096)
-+++.|.|.+|+||||||..+....... -..++|++....++... +..++.... ...+.+++...++..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~-g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~l 136 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 136 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHHH
Confidence 4689999999999999998887653322 23688998877666432 344433211 122344554444443
Q ss_pred h-CCCcEEEEEecCC
Q 043647 279 V-AGKRFLIVLDDVW 292 (1096)
Q Consensus 279 l-~~kr~LlVlDdv~ 292 (1096)
. +.+.-+||+|.+.
T Consensus 137 ~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 137 ARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHTCCSEEEEECGG
T ss_pred HhccCCCEEEEcCHH
Confidence 3 2445588999873
No 271
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.21 E-value=0.065 Score=57.99 Aligned_cols=56 Identities=18% Similarity=0.161 Sum_probs=38.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcccccc----------cc-----CcEEEEEecCccChHHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVE----------MF-----NLRSWVCVSDDFDILRITKSILESIT 259 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----------~f-----~~~~wv~~~~~~~~~~~~~~i~~~l~ 259 (1096)
.-.++.|+|.+|+||||+|..++...... .. ..++|++....++..++.+. +..++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g 167 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAG 167 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcC
Confidence 34799999999999999998877542110 11 46889988877777666543 44443
No 272
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.18 E-value=0.032 Score=55.99 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 186 DKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
-+++|.+.+... .....+|+|+|+.|.|||||++.+..-
T Consensus 7 ~~~~~~~~~~~~---~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPR---QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTT---CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445555655432 234579999999999999999988764
No 273
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.13 E-value=0.05 Score=49.59 Aligned_cols=53 Identities=25% Similarity=0.308 Sum_probs=34.5
Q ss_pred eEEEcCCCCcc--ccccccccCcCCCCccEEEeccCCCCcccCcCCCCCCCCcCeEeeccCC
Q 043647 1001 ILCVIGCPDAV--SFPEEEIGMTFPSSLTELVIVRFPKLKYLSSNGFRNLAFLEYLQIRDCP 1060 (1096)
Q Consensus 1001 ~L~l~~c~~l~--~l~~~~~~~~~~~sL~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~ 1060 (1096)
.++-++. .++ .+|. ..+++|+.|+|++ |+|+.|+...|..+++|+.|+|+++|
T Consensus 12 ~v~Cs~~-~L~~~~vP~-----~lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPT-----AFPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSS-CCCTTTSCS-----CCCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCC-CCccccCCC-----CCCcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 3444444 555 6665 3466777777777 66777776667777777777777654
No 274
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.11 E-value=0.3 Score=49.79 Aligned_cols=24 Identities=29% Similarity=0.620 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
.+++|+|+.|.|||||++.+..-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998643
No 275
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.11 E-value=0.099 Score=55.75 Aligned_cols=38 Identities=18% Similarity=0.131 Sum_probs=26.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEe
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCV 241 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~ 241 (1096)
-.+++|+|.+|+|||||++.++.......=..++|+..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 35899999999999999998886533221114556654
No 276
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.72 E-value=0.045 Score=56.87 Aligned_cols=43 Identities=26% Similarity=0.343 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 185 EDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 185 ~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
...++++..++..........+|.|+|++|+||||+|+.+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 13 HALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3445555555554434455689999999999999999998764
No 277
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.67 E-value=0.18 Score=54.91 Aligned_cols=90 Identities=19% Similarity=0.223 Sum_probs=51.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcccccc-cc----CcEEEEEecCccChHHHHHHHHHhccCCC------------CCC
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVE-MF----NLRSWVCVSDDFDILRITKSILESITFSP------------NSL 265 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~ 265 (1096)
.-.++.|+|+.|+|||||+..+....... .. ..++|++....+...++ ..+++..+... ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 35799999999999999999888654211 12 23588877655443333 33444433211 001
Q ss_pred CcHHHHHHHHHHHhC------CCcEEEEEecCCC
Q 043647 266 KDLNQIQVQLREAVA------GKRFLIVLDDVWS 293 (1096)
Q Consensus 266 ~~~~~~~~~l~~~l~------~kr~LlVlDdv~~ 293 (1096)
....++...+...++ .+.-+||+|.+-.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 112233333444443 4667888898743
No 278
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.65 E-value=0.047 Score=62.37 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=36.0
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 179 AVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
.++|+++.++.+...+... .-|.|+|++|+|||+||+.+++..
T Consensus 23 ~ivGq~~~i~~l~~al~~~-------~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG-------ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT-------CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcC-------CeeEeecCchHHHHHHHHHHHHHH
Confidence 4789999998888877553 358899999999999999999854
No 279
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.65 E-value=0.26 Score=54.79 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
...+|.++|.+|+||||++..++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46899999999999999998877543
No 280
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.60 E-value=0.25 Score=54.97 Aligned_cols=65 Identities=22% Similarity=0.240 Sum_probs=45.2
Q ss_pred HHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCcc-ChHHHHHHHHHh
Q 043647 189 KILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDF-DILRITKSILES 257 (1096)
Q Consensus 189 ~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 257 (1096)
++++.|..-. +-.-++|+|..|+|||+|+..+.++....+-+.++++-+++.. ...++.+++...
T Consensus 142 r~ID~l~pig----kGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA----KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE----TTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc----cCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4566664322 2356899999999999999988876433345667788787764 456777777654
No 281
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.56 E-value=0.031 Score=54.41 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+|.|.|++|+||||+|+.+.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 282
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.47 E-value=0.042 Score=54.24 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
-.+++|+|+.|+||||+++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999874
No 283
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.41 E-value=0.17 Score=56.57 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=62.2
Q ss_pred HHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCcc-ChHHHHHHHHHhccCC------
Q 043647 189 KILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDF-DILRITKSILESITFS------ 261 (1096)
Q Consensus 189 ~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------ 261 (1096)
++++.|..-. +-.-++|+|..|+|||+|+..+.++....+-+.++++-+++.. ...++.+++...=...
T Consensus 154 rvID~l~pig----kGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~ 229 (498)
T 1fx0_B 154 KVVNLLAPYR----RGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAE 229 (498)
T ss_dssp TTHHHHSCCC----TTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCC
T ss_pred eEeeeecccc----cCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccc
Confidence 3456664322 2346899999999999999988876433355788888888765 4667777776542111
Q ss_pred -CC-----CCCc-------HHHHHHHHHHHh---CCCcEEEEEecC
Q 043647 262 -PN-----SLKD-------LNQIQVQLREAV---AGKRFLIVLDDV 291 (1096)
Q Consensus 262 -~~-----~~~~-------~~~~~~~l~~~l---~~kr~LlVlDdv 291 (1096)
.. ..++ .......+.+++ +++.+|+++||+
T Consensus 230 ~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 230 SKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp CCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 00 0111 111223345555 468999999998
No 284
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.39 E-value=0.034 Score=53.75 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+|.|.|+.|+||||+|+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998864
No 285
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.35 E-value=0.24 Score=51.28 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
....+|+|.|+.|+||||+|+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999988764
No 286
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.34 E-value=0.36 Score=51.81 Aligned_cols=26 Identities=31% Similarity=0.235 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
...+++|+|+.|+||||+++.+....
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999888643
No 287
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.31 E-value=0.038 Score=54.99 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..+|.|+|+.|+||||+|+.+...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 288
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.15 E-value=0.043 Score=53.49 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFD 226 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (1096)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999886
No 289
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.11 E-value=0.072 Score=58.81 Aligned_cols=50 Identities=26% Similarity=0.279 Sum_probs=35.7
Q ss_pred ccccchHHHHHHHHHHhcC----------CCCCCCceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 179 AVFGRDEDKAKILEMVLRD----------EPTDANFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 179 ~~vgr~~~~~~l~~~L~~~----------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
.++|.+..++.+...+... .......+.|.++|++|+|||++|+++++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3688888888887777210 0011124568999999999999999998753
No 290
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.05 E-value=0.22 Score=52.89 Aligned_cols=88 Identities=19% Similarity=0.109 Sum_probs=46.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChH--HHHHHHHHhccCC---CCCCCcHHHH-HHHHH
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDIL--RITKSILESITFS---PNSLKDLNQI-QVQLR 276 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~---~~~~~~~~~~-~~~l~ 276 (1096)
...+|+|+|.+|+||||++..++...... -..+.++.. +.+... +-+...++..+.. .....+...+ ...+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 45799999999999999998888654322 123445543 222221 1223334433321 1111222222 23344
Q ss_pred HHhCCCcEEEEEecCC
Q 043647 277 EAVAGKRFLIVLDDVW 292 (1096)
Q Consensus 277 ~~l~~kr~LlVlDdv~ 292 (1096)
..+....-++|+|-.-
T Consensus 181 ~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 181 HALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 4444555578889764
No 291
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.98 E-value=0.21 Score=55.65 Aligned_cols=26 Identities=35% Similarity=0.193 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
..++|.++|.+|+||||++..++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35899999999999999998887654
No 292
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.95 E-value=0.053 Score=52.88 Aligned_cols=24 Identities=17% Similarity=0.391 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
-++++|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999998764
No 293
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.91 E-value=0.058 Score=53.71 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
..+|+|+|+.|.||||+|+.+....
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999988754
No 294
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.85 E-value=0.042 Score=53.15 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+|+|+|+.|+||||+++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998864
No 295
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.83 E-value=0.047 Score=53.51 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+.|.|+|+.|+||||+|+.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999864
No 296
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.79 E-value=0.37 Score=53.87 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcccc
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKA 229 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 229 (1096)
...++|.++|.+|+||||+|..++....
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999988876443
No 297
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.74 E-value=0.043 Score=53.43 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
|.|.|+|+.|+|||||++.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35889999999999999998764
No 298
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.73 E-value=0.23 Score=54.95 Aligned_cols=56 Identities=16% Similarity=0.142 Sum_probs=36.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccc-----ccCcEEEEEecCccChHHHHHHHHHhccC
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVE-----MFNLRSWVCVSDDFDILRITKSILESITF 260 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 260 (1096)
-.++.|+|.+|+|||||+..++-..... .-..++|++....+...++ +.+++.++.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl 238 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGL 238 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCC
Confidence 4689999999999999998664221111 1235788877665555443 335555543
No 299
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.73 E-value=0.46 Score=50.93 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=36.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
-.++.|.|.+|+||||+|..++.+...+. ..++|++.. .+..++...++..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g-~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND-DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT-CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEECC--CCHHHHHHHHHHH
Confidence 46899999999999999988876533322 457777654 5566777776654
No 300
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.71 E-value=0.14 Score=50.89 Aligned_cols=74 Identities=18% Similarity=0.177 Sum_probs=42.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccC---------CCCCCCcHHHHHHHHH
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITF---------SPNSLKDLNQIQVQLR 276 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~---------~~~~~~~~~~~~~~l~ 276 (1096)
+|.|.|++|+||+|.|+.+.... . ...++ ..+++++-+..-.. .....-..+-+...+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-----g-~~~is------tGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~ 69 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-----G-FVHIS------TGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIE 69 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----C-CEEEE------HHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----C-CeEEc------HHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHH
Confidence 57899999999999999998743 2 12333 23344332221000 0111222344556677
Q ss_pred HHhCCCcEEEEEecCC
Q 043647 277 EAVAGKRFLIVLDDVW 292 (1096)
Q Consensus 277 ~~l~~kr~LlVlDdv~ 292 (1096)
+.+..... +|||..-
T Consensus 70 ~~l~~~~~-~ilDGfP 84 (206)
T 3sr0_A 70 EVFPKHGN-VIFDGFP 84 (206)
T ss_dssp HHCCSSSC-EEEESCC
T ss_pred HhhccCCc-eEecCCc
Confidence 77765544 6789884
No 301
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.69 E-value=0.47 Score=53.96 Aligned_cols=27 Identities=30% Similarity=0.287 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
...++|+|+|.+|+||||++..+....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999998888543
No 302
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.61 E-value=0.013 Score=57.51 Aligned_cols=23 Identities=30% Similarity=0.125 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.++.|+|+.|+||||+|..+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999666554
No 303
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.60 E-value=0.31 Score=58.72 Aligned_cols=97 Identities=15% Similarity=0.175 Sum_probs=56.6
Q ss_pred CccccchHHHHHHHHHHhcCC--------CCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHH
Q 043647 178 PAVFGRDEDKAKILEMVLRDE--------PTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILR 249 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~--------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~ 249 (1096)
.++.|.++.++++.+.+.-.- .+....+-|.++|++|.|||.+|+++++..... ++.++.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~------f~~v~~------ 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN------FISIKG------ 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE------EEECCH------
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc------eEEecc------
Confidence 456788877777766553211 112234557899999999999999999864321 222321
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCcEEEEEecCCC
Q 043647 250 ITKSILESITFSPNSLKDLNQIQVQLREAVAGKRFLIVLDDVWS 293 (1096)
Q Consensus 250 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 293 (1096)
.+++.... ......+.......-+..+++|++|+++.
T Consensus 545 --~~l~s~~v-----Gese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 545 --PELLTMWF-----GESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp --HHHHTTTC-----SSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred --chhhcccc-----chHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 12222111 12223333333333456789999999964
No 304
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.57 E-value=0.067 Score=52.81 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..+|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999998764
No 305
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.54 E-value=0.064 Score=57.37 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=26.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEec
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVS 242 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~ 242 (1096)
...+||+|.|-|||||||.|..+..-..... ..+.-|.+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~G-kkVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG-KRVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCC-CeEEEEecC
Confidence 3579999999999999999866655332211 135555554
No 306
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.48 E-value=0.066 Score=51.64 Aligned_cols=23 Identities=39% Similarity=0.771 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFD 226 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (1096)
-.+++|+|+.|+|||||++..+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997554
No 307
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.47 E-value=0.08 Score=51.26 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..+|+|+|+.|+||||+|+.+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 468999999999999999988763
No 308
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.45 E-value=0.064 Score=53.38 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..+|+|+|+.|+||||+|+.+...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998864
No 309
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.45 E-value=0.12 Score=55.47 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=32.5
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 181 FGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 181 vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
|+.+.-++++++.+...- ..+....|.|+|+.|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i-~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRI-EDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTT-TTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh-ccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 344555666666663221 12345679999999999999999888753
No 310
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.45 E-value=0.05 Score=54.26 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..+|+|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999988764
No 311
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.33 E-value=0.062 Score=53.04 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
.+|.|.|+.|+||||+|+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998753
No 312
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.30 E-value=0.71 Score=48.49 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
-.+++|+|+.|.|||||++.+..-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 358999999999999999999864
No 313
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.30 E-value=0.071 Score=53.39 Aligned_cols=25 Identities=40% Similarity=0.542 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
..+|+|+|+.|+|||||++.+....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998653
No 314
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.30 E-value=0.072 Score=52.42 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFD 226 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (1096)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 315
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.24 E-value=0.074 Score=50.65 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
..++++|+|..|+||||++..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 36799999999999999999888754
No 316
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.21 E-value=0.056 Score=52.70 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.++|.|.|++|+||||+|+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 467899999999999999998864
No 317
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.16 E-value=0.26 Score=54.75 Aligned_cols=26 Identities=35% Similarity=0.231 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKA 229 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 229 (1096)
..+|+|+|.+|+||||++..++....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999988886543
No 318
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.14 E-value=0.066 Score=51.48 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
...+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999998874
No 319
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.12 E-value=0.065 Score=52.80 Aligned_cols=24 Identities=33% Similarity=0.661 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999988743
No 320
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.09 E-value=0.07 Score=53.26 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999988764
No 321
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.07 E-value=0.085 Score=52.80 Aligned_cols=25 Identities=36% Similarity=0.415 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
...+|+|+|+.|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999998874
No 322
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.06 E-value=0.071 Score=55.24 Aligned_cols=23 Identities=30% Similarity=0.237 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+|.|.|+.|+||||+|+.++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 57899999999999999998864
No 323
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.05 E-value=0.077 Score=51.48 Aligned_cols=23 Identities=43% Similarity=0.547 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
.++|+|+.|+|||||++.+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999888654
No 324
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.04 E-value=0.061 Score=58.56 Aligned_cols=110 Identities=16% Similarity=0.205 Sum_probs=60.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHH-HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILR-ITKSILESITFSPNSLKDLNQIQVQLREAVAGKR 283 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 283 (1096)
.+++|+|+.|.||||+.+.+...... .....+ +.+.++..... -...+..+... ..+.......+...|...+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~-~~~~~i-~t~ed~~e~~~~~~~~~v~q~~~----~~~~~~~~~~La~aL~~~P 197 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNN-TKYHHI-LTIEDPIEFVHESKKCLVNQREV----HRDTLGFSEALRSALREDP 197 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHH-HCCCEE-EEEESSCCSCCCCSSSEEEEEEB----TTTBSCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccC-CCCcEE-EEccCcHHhhhhccccceeeeee----ccccCCHHHHHHHHhhhCc
Confidence 59999999999999999988763221 111222 22222211100 00000000000 0111223447888888899
Q ss_pred EEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchhhh
Q 043647 284 FLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTDVA 325 (1096)
Q Consensus 284 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 325 (1096)
=+|++|.+.+ .+.++.+.... ..|-.||+||...+.+
T Consensus 198 dvillDEp~d--~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 198 DIILVGEMRD--LETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred CEEecCCCCC--HHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 9999999954 35555544432 2366789998776654
No 325
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.01 E-value=0.28 Score=52.61 Aligned_cols=52 Identities=15% Similarity=0.041 Sum_probs=36.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESI 258 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 258 (1096)
-.++.|.|.+|+||||+|..++..... .=..++|++. ..+..++...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 358999999999999999888765432 1234566554 556677777776544
No 326
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.99 E-value=0.089 Score=52.44 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
...+|+|.|+.|+||||+|+.+...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999998864
No 327
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.99 E-value=0.062 Score=52.73 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999988643
No 328
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.96 E-value=0.077 Score=51.92 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..+|+|+|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999988864
No 329
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.96 E-value=0.059 Score=52.24 Aligned_cols=23 Identities=43% Similarity=0.627 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
+.|.|.|++|+||||+|+.+...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
No 330
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.95 E-value=0.21 Score=56.91 Aligned_cols=105 Identities=16% Similarity=0.093 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHHH-------
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLRE------- 277 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~------- 277 (1096)
+.+.|.|.+|+||||++..+...........++.+. ...... ..+.+.++.. ..+... .+..
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a-~T~~Aa----~~l~~~~~~~---~~T~h~---~~~~~~~~~~~ 114 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGETGIILAA-PTHAAK----KILSKLSGKE---ASTIHS---ILKINPVTYEE 114 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEE-SSHHHH----HHHHHHHSSC---EEEHHH---HHTEEEEECSS
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEec-CcHHHH----HHHHhhhccc---hhhHHH---HhccCcccccc
Confidence 389999999999999998888754433222333332 222111 1222222111 011110 0000
Q ss_pred ---------HhCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchh
Q 043647 278 ---------AVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTD 323 (1096)
Q Consensus 278 ---------~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 323 (1096)
....+.-++|+|++...+...+..+...+. .+.++++.--..+
T Consensus 115 ~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 115 NVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp CEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEECTTS
T ss_pred cchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEECCHHH
Confidence 001233588999997776666766666554 4567777654433
No 331
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.93 E-value=0.078 Score=53.03 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+.++|.|.|++|+||+|.|+.+...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998874
No 332
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.91 E-value=0.082 Score=52.66 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
+..+|+|.|+.|+||||+|+.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4679999999999999999998864
No 333
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.90 E-value=0.084 Score=53.00 Aligned_cols=25 Identities=36% Similarity=0.331 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
...+|+|+|+.|+|||||++.+..-
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999988763
No 334
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.86 E-value=0.064 Score=53.55 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
..++|.|+|+.|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999987643
No 335
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.80 E-value=0.076 Score=52.99 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999874
No 336
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.78 E-value=0.078 Score=52.47 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..+|+|.|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998864
No 337
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.76 E-value=0.083 Score=52.21 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..+|+|.|+.|+||||+|+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999988764
No 338
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.71 E-value=0.086 Score=54.94 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998864
No 339
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.70 E-value=0.092 Score=52.48 Aligned_cols=24 Identities=42% Similarity=0.594 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..+|+|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999998764
No 340
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.66 E-value=0.095 Score=52.37 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFD 226 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (1096)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 341
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.59 E-value=0.073 Score=52.79 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
++++|+|+.|+|||||++.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999988763
No 342
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.58 E-value=0.097 Score=51.28 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
...+|.|.|++|+||||+|+.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999988754
No 343
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.49 E-value=0.066 Score=52.38 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998864
No 344
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.46 E-value=0.083 Score=52.70 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFD 226 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (1096)
.+|+|+|+.|+||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 345
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.43 E-value=0.094 Score=54.14 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..+|+|+|+.|+||||+++.+...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999853
No 346
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.40 E-value=0.093 Score=53.37 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999988763
No 347
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.38 E-value=0.1 Score=51.83 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..+|.|.|++|+||||+|+.+...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998864
No 348
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.37 E-value=0.1 Score=51.17 Aligned_cols=25 Identities=16% Similarity=0.473 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..++|+|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3478999999999999999998864
No 349
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.36 E-value=0.72 Score=49.27 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
...++|+|+|.+|+||||++..++...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346899999999999999998887643
No 350
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.31 E-value=0.099 Score=51.19 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..+|+|.|+.|+||||+|+.+...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998763
No 351
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.26 E-value=0.14 Score=51.37 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=24.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNL 235 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~ 235 (1096)
..+|+|.|+.|+||||+|+.+.......+++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 46899999999999999999987543324443
No 352
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.23 E-value=0.12 Score=50.96 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 353
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.17 E-value=0.12 Score=55.29 Aligned_cols=25 Identities=36% Similarity=0.318 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
...+|+|+|+.|+|||||++.+..-
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 4579999999999999999988764
No 354
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.17 E-value=0.08 Score=51.11 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998874
No 355
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.16 E-value=0.37 Score=50.91 Aligned_cols=89 Identities=21% Similarity=0.056 Sum_probs=46.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCc-cChHHHHHHHHHhccCC---CCCCCcHHHHHHHHHHHh
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDD-FDILRITKSILESITFS---PNSLKDLNQIQVQLREAV 279 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~l~~~l 279 (1096)
..+++++|.+|+||||++..++...... -..+.++..... ....+.++...+..+.. .....+...+.....+.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~-g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~ 176 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK-GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKF 176 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT-TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998887643322 123555554322 12222233334433321 111223334333333333
Q ss_pred C-CCcEEEEEecCCC
Q 043647 280 A-GKRFLIVLDDVWS 293 (1096)
Q Consensus 280 ~-~kr~LlVlDdv~~ 293 (1096)
+ ..-=++++|-.-.
T Consensus 177 ~~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 177 LSEKMEIIIVDTAGR 191 (297)
T ss_dssp HHTTCSEEEEECCCS
T ss_pred HhCCCCEEEEeCCCC
Confidence 3 3333788887643
No 356
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.16 E-value=0.11 Score=52.22 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
.+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998743
No 357
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.11 E-value=0.093 Score=52.06 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+|+|.|+.|+||||+|+.+...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998874
No 358
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.07 E-value=0.12 Score=48.74 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
-.+++|+|+.|.|||||++.+..-
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999988764
No 359
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.94 E-value=0.11 Score=49.90 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998874
No 360
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.91 E-value=0.11 Score=51.89 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
-.+++|+|+.|+|||||++.+..-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999988764
No 361
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.83 E-value=0.13 Score=52.91 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..+|+|.|+.|+||||+++.+...
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988763
No 362
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.80 E-value=0.076 Score=51.86 Aligned_cols=24 Identities=38% Similarity=0.389 Sum_probs=17.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998764
No 363
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.76 E-value=0.14 Score=50.34 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
...+|+|.|+.|+||||+|+.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999999999999888763
No 364
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.76 E-value=0.13 Score=54.67 Aligned_cols=26 Identities=31% Similarity=0.273 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
...+++|+|+.|+||||+++.++.-.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35699999999999999999888643
No 365
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=90.74 E-value=0.11 Score=56.99 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=33.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
.+++|.+..+..+...+.... ..-+.|+|++|+|||++|+.+.+..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~-----~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG-----IGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG-----GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCC-----CceEEEECCCCccHHHHHHHHHHhC
Confidence 458999886666554443221 2238899999999999999998753
No 366
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.74 E-value=0.46 Score=53.77 Aligned_cols=52 Identities=19% Similarity=0.084 Sum_probs=36.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
-.++.|.|.+|+||||+|..++.+.....-..++|++.. .+..++...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC--CCHHHHHHHHHHH
Confidence 468999999999999999888875433222357776654 4566777776543
No 367
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.70 E-value=0.13 Score=49.96 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..+|+|.|+.|+||||+++.+...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988764
No 368
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.69 E-value=0.12 Score=52.37 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
...|.|.|++|+||||+|+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998874
No 369
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.64 E-value=0.13 Score=53.28 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..+|+|+|+.|+||||+++.+...
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999853
No 370
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.63 E-value=0.1 Score=52.62 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|+|||||++.+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999988764
No 371
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.58 E-value=0.099 Score=52.99 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
...|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998874
No 372
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.58 E-value=0.36 Score=51.10 Aligned_cols=25 Identities=36% Similarity=0.246 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
..+++|+|.+|+||||++..++...
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999998888654
No 373
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.54 E-value=0.12 Score=50.96 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998743
No 374
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.53 E-value=0.5 Score=53.67 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=34.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHH
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSIL 255 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 255 (1096)
-.++.|.|.+|+||||+|..++.......-..++|++.. .+..++...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E--~s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE--MSAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS--SCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC--CCHHHHHHHHH
Confidence 358999999999999999888875433222257777644 34456666654
No 375
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.41 E-value=0.26 Score=57.54 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=54.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCCCCCcHHHHHHHHH-HHh----
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPNSLKDLNQIQVQLR-EAV---- 279 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l---- 279 (1096)
+++.|.|.+|+||||++..+....... ...+.+..........+ .+.++.. ..+...+..... ...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~--g~~Vl~~ApT~~Aa~~L----~e~~~~~---a~Tih~ll~~~~~~~~~~~~ 275 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL--GLEVGLCAPTGKAARRL----GEVTGRT---ASTVHRLLGYGPQGFRHNHL 275 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHHH----HHHHTSC---EEEHHHHTTEETTEESCSSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEecCcHHHHHHh----Hhhhccc---HHHHHHHHcCCcchhhhhhc
Confidence 588999999999999998887643322 23344444333222222 2222211 111111000000 000
Q ss_pred -CCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEc
Q 043647 280 -AGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTT 319 (1096)
Q Consensus 280 -~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 319 (1096)
..+--+||+|.+...+...+..+...++ .|.++|+.-
T Consensus 276 ~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvG 313 (574)
T 3e1s_A 276 EPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVG 313 (574)
T ss_dssp SCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEE
T ss_pred ccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEe
Confidence 0123489999997776666777766654 456777654
No 376
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.38 E-value=0.12 Score=52.65 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
...|.|.|+.|+||||+|+.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998864
No 377
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.38 E-value=0.2 Score=55.89 Aligned_cols=51 Identities=22% Similarity=0.285 Sum_probs=36.1
Q ss_pred CccccchHHHHHHHHHHhcC--------C-CCCCCceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 178 PAVFGRDEDKAKILEMVLRD--------E-PTDANFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~--------~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
..++|.++.++.+...+... . ......+-|.++|++|+||||+|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 35789888888877666321 0 001124568999999999999999998754
No 378
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.33 E-value=0.14 Score=51.60 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
-.+++|+|+.|+|||||++.+....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4689999999999999999987643
No 379
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.32 E-value=0.3 Score=49.63 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=29.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccc-----ccCcEEEEEecCc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVE-----MFNLRSWVCVSDD 244 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~f~~~~wv~~~~~ 244 (1096)
-.+++|+|+.|+|||||++.+....... .-..++|+.-...
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 4799999999999999999987532221 1234777765443
No 380
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.25 E-value=0.72 Score=51.09 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=23.6
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhc
Q 043647 200 TDANFSLIPIVGMAGVGKTTLARVAFD 226 (1096)
Q Consensus 200 ~~~~~~vi~I~G~gGiGKTtLa~~v~~ 226 (1096)
.....++..|.|.+|.||||+.+..++
T Consensus 157 ~~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 157 HVSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccccEEEEEcCCCCCHHHHHHHHhc
Confidence 345689999999999999999988875
No 381
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.24 E-value=0.13 Score=51.61 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=24.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNL 235 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~ 235 (1096)
..+|+|.|+.|+||||+|+.+.......+++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 46899999999999999999987543334444
No 382
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.19 E-value=0.16 Score=53.47 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAF 225 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~ 225 (1096)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999887
No 383
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=90.11 E-value=0.47 Score=51.02 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCc-EEEEEecCc
Q 043647 187 KAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNL-RSWVCVSDD 244 (1096)
Q Consensus 187 ~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~-~~wv~~~~~ 244 (1096)
--++++.+..-. +-..++|+|.+|+|||+|++.+.+.....+-+. ++++-+++.
T Consensus 162 GiraID~l~Pig----rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 162 STRLIDLFAPIG----KGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHHHSCCB----TTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCC
T ss_pred cchhhhhccccc----CCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccC
Confidence 346677775432 235689999999999999988887543322332 245556554
No 384
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.05 E-value=0.19 Score=49.00 Aligned_cols=38 Identities=11% Similarity=0.064 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 187 KAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 187 ~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
+..+..++.. - ++...+.|+|++|+||||+|.++++..
T Consensus 45 ~~~l~~~~~~-i---Pkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKG-T---PKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHT-C---TTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-C---CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4555555532 1 223569999999999999998888753
No 385
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.94 E-value=0.13 Score=51.70 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 386
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.92 E-value=0.17 Score=50.80 Aligned_cols=25 Identities=28% Similarity=0.183 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
..+|.|.|+.|+||||+|+.+....
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999988643
No 387
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.90 E-value=0.15 Score=50.46 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999988753
No 388
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.89 E-value=0.32 Score=50.10 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=32.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHH
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSIL 255 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 255 (1096)
-.++.|.|.+|+|||++|.+++.+...+.-..+++++.. .+..++.+.+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E--~~~~~~~~~~~ 79 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE--ERARDLRREMA 79 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS--SCHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc--CCHHHHHHHHH
Confidence 468999999999999999876644222223456666543 34555555543
No 389
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.89 E-value=0.58 Score=52.58 Aligned_cols=42 Identities=26% Similarity=0.243 Sum_probs=28.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccC
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFD 246 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~ 246 (1096)
...+++|+|..|+|||||++.+...... ....+++...+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccc
Confidence 4679999999999999999988864322 23444444334433
No 390
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.84 E-value=0.16 Score=50.56 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
..+|+|.|+.|+||||+|+.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998753
No 391
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.77 E-value=0.79 Score=52.89 Aligned_cols=53 Identities=9% Similarity=0.002 Sum_probs=37.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESI 258 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 258 (1096)
-.++.|.|.+|+||||+|..++.+....+=..++|++.. .+..++...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E--~s~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE--ESVEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc--CCHHHHHHHHHHHH
Confidence 468899999999999999888865433222357777653 35667777765443
No 392
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.76 E-value=0.1 Score=50.09 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
++++|+|..|+|||||++.+..-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999998888643
No 393
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.74 E-value=0.24 Score=50.15 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
...+|+|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4688999999999999999888765
No 394
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.71 E-value=0.15 Score=51.41 Aligned_cols=22 Identities=32% Similarity=0.521 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 395
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.67 E-value=0.085 Score=53.07 Aligned_cols=23 Identities=39% Similarity=0.471 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 78999999999999999987643
No 396
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.67 E-value=0.14 Score=50.00 Aligned_cols=23 Identities=39% Similarity=0.420 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
+++|+|+.|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999998887643
No 397
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.64 E-value=0.2 Score=50.54 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFD 226 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (1096)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998865
No 398
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.56 E-value=0.13 Score=52.79 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+|+|+|+.|+||||+++.+...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999863
No 399
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.55 E-value=0.18 Score=51.59 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|.|||||.+.+..-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998863
No 400
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=89.51 E-value=0.29 Score=54.45 Aligned_cols=87 Identities=11% Similarity=0.148 Sum_probs=52.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcccccccc---CcEEEEEecCcc-ChHHHHHHHHHhccCC-------CCCCCcHH----
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMF---NLRSWVCVSDDF-DILRITKSILESITFS-------PNSLKDLN---- 269 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f---~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 269 (1096)
.-++|+|.+|+|||+|+..++++....+. +.++++-+++.. .+.++.+++...=... ..+.....
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 45788999999999999999886554221 356667676654 4566666666431111 01111111
Q ss_pred -HHHHHHHHHh---CCCcEEEEEecC
Q 043647 270 -QIQVQLREAV---AGKRFLIVLDDV 291 (1096)
Q Consensus 270 -~~~~~l~~~l---~~kr~LlVlDdv 291 (1096)
.....+.+++ +|+.+|+++||+
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1122244444 479999999997
No 401
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.49 E-value=0.19 Score=51.70 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
...+|.|.|++|+||||+|+.+.+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998764
No 402
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.42 E-value=0.2 Score=53.24 Aligned_cols=24 Identities=38% Similarity=0.344 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..+++|+|+.|+||||+++.++..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 479999999999999999888864
No 403
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.39 E-value=0.22 Score=53.09 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.++|.|+|+.|+||||||..++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999974
No 404
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.34 E-value=0.18 Score=51.31 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|+|||||++.+..-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999998863
No 405
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.30 E-value=0.18 Score=53.93 Aligned_cols=23 Identities=39% Similarity=0.391 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+|+|.|+.|+||||||+.++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999998874
No 406
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.29 E-value=0.18 Score=50.97 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|+|||||++.+..-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998863
No 407
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.20 E-value=0.36 Score=48.99 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=27.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEE
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWV 239 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv 239 (1096)
..+|.|.|+.|+||||+++.+.......++..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 368999999999999999999876544455534443
No 408
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.19 E-value=0.15 Score=51.46 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..|.|.|++|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998874
No 409
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.11 E-value=0.21 Score=47.96 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..++++|+|..|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3679999999999999999888865
No 410
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.07 E-value=0.19 Score=51.91 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFD 226 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (1096)
-.+++|+|+.|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999998874
No 411
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.03 E-value=0.13 Score=52.34 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=15.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 043647 205 SLIPIVGMAGVGKTTLARVAF 225 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~ 225 (1096)
.+++|+|+.|+|||||++.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999988
No 412
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=88.96 E-value=0.55 Score=52.55 Aligned_cols=96 Identities=21% Similarity=0.257 Sum_probs=55.4
Q ss_pred HHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHH-HHHhccccccccCc-EEEEEecCcc-ChHHHHHHHHHhccC-----
Q 043647 189 KILEMVLRDEPTDANFSLIPIVGMAGVGKTTLA-RVAFDDKAVEMFNL-RSWVCVSDDF-DILRITKSILESITF----- 260 (1096)
Q Consensus 189 ~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~----- 260 (1096)
+.++.+..-. +-..++|+|..|+|||+|| ..+.+.. ..+. ++++-+++.. .+.++.+.+...=..
T Consensus 164 raID~l~Pig----rGQR~~I~g~~g~GKT~Lal~~I~~~~---~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvv 236 (515)
T 2r9v_A 164 KAIDSMIPIG----RGQRELIIGDRQTGKTAIAIDTIINQK---GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTV 236 (515)
T ss_dssp HHHHHHSCEE----TTCBEEEEEETTSSHHHHHHHHHHTTT---TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEE
T ss_pred cccccccccc----cCCEEEEEcCCCCCccHHHHHHHHHhh---cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEE
Confidence 4566664322 2346899999999999996 4666643 3453 4677777654 455666666542111
Q ss_pred ---CCCCCCcHHH----HHHHHHHHh--CCCcEEEEEecC
Q 043647 261 ---SPNSLKDLNQ----IQVQLREAV--AGKRFLIVLDDV 291 (1096)
Q Consensus 261 ---~~~~~~~~~~----~~~~l~~~l--~~kr~LlVlDdv 291 (1096)
..++...... ....+.+++ +|+.+|+++||+
T Consensus 237 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 237 VVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 1111111111 112234444 589999999998
No 413
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.92 E-value=0.21 Score=50.49 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..+|+|.|+.|+||||+|+.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998864
No 414
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.91 E-value=1.6 Score=51.19 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
-.+++|+|+.|.|||||++.+..-
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998763
No 415
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=88.91 E-value=0.22 Score=53.27 Aligned_cols=25 Identities=40% Similarity=0.360 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
...+|+|+|+.|+|||||++.+..-
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999988763
No 416
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.89 E-value=0.3 Score=49.18 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=29.3
Q ss_pred cchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 182 GRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 182 gr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
+.++..+.+.+.+.. ...++|+|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~-----~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRE-----SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH-----HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcc-----cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 334455555554422 24689999999999999999888765
No 417
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=88.85 E-value=0.68 Score=51.78 Aligned_cols=96 Identities=19% Similarity=0.231 Sum_probs=55.3
Q ss_pred HHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHH-HHHhccccccccCc-EEEEEecCcc-ChHHHHHHHHHhccCCCC--
Q 043647 189 KILEMVLRDEPTDANFSLIPIVGMAGVGKTTLA-RVAFDDKAVEMFNL-RSWVCVSDDF-DILRITKSILESITFSPN-- 263 (1096)
Q Consensus 189 ~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-- 263 (1096)
+.++.+..-. +-.-++|+|..|+|||+|| ..+.+.. ..+. ++++-+++.. .+.++.+.+...=.....
T Consensus 151 raID~l~Pig----rGQR~~Ifg~~g~GKT~Lal~~I~~~~---~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvv 223 (502)
T 2qe7_A 151 KAIDSMIPIG----RGQRELIIGDRQTGKTTIAIDTIINQK---GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIV 223 (502)
T ss_dssp HHHHHSSCCB----TTCBCEEEECSSSCHHHHHHHHHHGGG---SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEE
T ss_pred eecccccccc----cCCEEEEECCCCCCchHHHHHHHHHhh---cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEE
Confidence 4456554322 2345799999999999996 4666643 3453 4677777654 455666666542211110
Q ss_pred ---CCCc--HHH-----HHHHHHHHh--CCCcEEEEEecC
Q 043647 264 ---SLKD--LNQ-----IQVQLREAV--AGKRFLIVLDDV 291 (1096)
Q Consensus 264 ---~~~~--~~~-----~~~~l~~~l--~~kr~LlVlDdv 291 (1096)
..++ ... ....+.+++ +|+.+|+++||+
T Consensus 224 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 224 VTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 1111 111 112234444 589999999998
No 418
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.80 E-value=0.22 Score=52.24 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.++|.|+|+.|+||||||..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 368999999999999999999864
No 419
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.80 E-value=0.3 Score=50.85 Aligned_cols=26 Identities=35% Similarity=0.299 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
....++.+.|.||+||||++..+...
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 35688999999999999999888743
No 420
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.73 E-value=0.4 Score=47.77 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=32.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHH
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILE 256 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 256 (1096)
..|.|-|+.|+||||+++.+........+..+.+..-.......+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 5899999999999999999987654444533333322222223344555544
No 421
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.71 E-value=0.2 Score=49.97 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
+|+|.|+.|+||||+|+.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999998764
No 422
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.70 E-value=0.45 Score=47.70 Aligned_cols=34 Identities=24% Similarity=0.185 Sum_probs=26.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccc-cccCcE
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAV-EMFNLR 236 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~f~~~ 236 (1096)
...+|.|.|+.|+||||+++.+.+.... ..+...
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~ 54 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNV 54 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceee
Confidence 4578999999999999999999876554 344433
No 423
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.70 E-value=0.21 Score=52.06 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFD 226 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (1096)
.+++|+|+.|+|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999875
No 424
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.63 E-value=0.63 Score=61.39 Aligned_cols=84 Identities=17% Similarity=0.100 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCC-----CCCcHHHHHHHHHH
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPN-----SLKDLNQIQVQLRE 277 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 277 (1096)
..++|.|+|++|+|||+||.++...... .=..++|+++...++... ++.++..-. .....++....+++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~-~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~ 1499 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1499 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHH
Confidence 4579999999999999999888765332 223577888777766655 334432111 12334455555555
Q ss_pred Hh-CCCcEEEEEecCC
Q 043647 278 AV-AGKRFLIVLDDVW 292 (1096)
Q Consensus 278 ~l-~~kr~LlVlDdv~ 292 (1096)
.. +.+.-+||+|.+.
T Consensus 1500 lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1500 LARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHTCCSEEEESCGG
T ss_pred HHhcCCCCEEEEcChh
Confidence 54 3567799999994
No 425
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.53 E-value=0.22 Score=51.66 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|+|||||++.+..-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998863
No 426
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.51 E-value=0.17 Score=50.43 Aligned_cols=23 Identities=35% Similarity=0.343 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|.|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999988754
No 427
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=88.50 E-value=0.4 Score=53.02 Aligned_cols=86 Identities=12% Similarity=0.216 Sum_probs=51.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccC----cEEEEEecCcc-ChHHHHHHHHHhccC-------CCCCCCcHHH--
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFN----LRSWVCVSDDF-DILRITKSILESITF-------SPNSLKDLNQ-- 270 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~----~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~-- 270 (1096)
.-++|.|..|+|||+|+.++.+.... +-+ .++++-+++.. .+.++.+++...=.. ...+......
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~-~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV-LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC-SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh-ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence 34789999999999999988876443 223 56666676653 456666665542100 0011111111
Q ss_pred ---HHHHHHHHh---CCCcEEEEEecC
Q 043647 271 ---IQVQLREAV---AGKRFLIVLDDV 291 (1096)
Q Consensus 271 ---~~~~l~~~l---~~kr~LlVlDdv 291 (1096)
....+.+++ +++.+|+++||+
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 122344554 389999999998
No 428
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.44 E-value=0.2 Score=50.12 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|.|||||++.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998864
No 429
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.40 E-value=0.23 Score=50.76 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|.|||||.+.++.-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998864
No 430
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.37 E-value=0.23 Score=52.76 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
++|.|+|+.|+||||||+.++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 431
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.36 E-value=0.22 Score=50.42 Aligned_cols=22 Identities=36% Similarity=0.403 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 432
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=88.33 E-value=0.45 Score=51.99 Aligned_cols=39 Identities=28% Similarity=0.350 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 186 DKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
...++.+.+.... ....+|+|+|.+|+||||++..+...
T Consensus 64 ~~~~~~~~~~~~~---~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 64 QAQQLLLRLLPDS---GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHHGGGC---CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhc---CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 3445555554322 35689999999999999999887654
No 433
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.31 E-value=0.23 Score=51.55 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|.|||||++.+..-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999999863
No 434
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.30 E-value=0.24 Score=51.37 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|+|||||++.+..-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 58999999999999999998863
No 435
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.30 E-value=0.23 Score=50.59 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
...|.|.|+.|+||||+|+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999874
No 436
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.23 E-value=0.24 Score=51.28 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|+|||||.+.+..-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998863
No 437
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.21 E-value=0.26 Score=50.56 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
-.+++|+|+.|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999998863
No 438
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.14 E-value=0.3 Score=48.63 Aligned_cols=105 Identities=16% Similarity=0.183 Sum_probs=54.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCC----------CCCcHHHHHHH
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPN----------SLKDLNQIQVQ 274 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~~~~~~~~ 274 (1096)
-.|.+.|.||+||||+|..+......+.++ +..+.+........ ...+..+...+. ...+.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~-V~v~d~D~q~~~~~--~al~~gl~~~~~~~~~~~~~~~~e~~l~~~--- 80 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVR-VMAGVVETHGRAET--EALLNGLPQQPLLRTEYRGMTLEEMDLDAL--- 80 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCC-EEEEECCCTTCHHH--HHHHTTSCBCCCEEEEETTEEEEECCHHHH---
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCC-EEEEEeCCCCChhH--HHHhcCccccCcceeecCCcccccccHHHH---
Confidence 347889999999999998877654433443 33444433222221 122232222110 01222221
Q ss_pred HHHHhCCCcEEEEEecCCCC------ChhhHHHhhcccCCCCCCcEEEEEcCch
Q 043647 275 LREAVAGKRFLIVLDDVWSK------NYSLWNTLKSPFRAGASGSKILVTTCST 322 (1096)
Q Consensus 275 l~~~l~~kr~LlVlDdv~~~------~~~~~~~l~~~l~~~~~gs~iivTtR~~ 322 (1096)
+ +.+.=++|+|+.-.. ....|+.+...++ .|-.|++|+.-.
T Consensus 81 L----~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nlq 127 (228)
T 2r8r_A 81 L----KAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNVQ 127 (228)
T ss_dssp H----HHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEGG
T ss_pred H----hcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEcccc
Confidence 2 234569999987532 1124666655332 355788887644
No 439
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.12 E-value=0.22 Score=49.97 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998864
No 440
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=88.10 E-value=0.27 Score=53.34 Aligned_cols=26 Identities=35% Similarity=0.302 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
...+++|+|+.|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45799999999999999998888643
No 441
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=88.09 E-value=1.3 Score=45.04 Aligned_cols=89 Identities=16% Similarity=0.213 Sum_probs=47.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccc-ccc-cc-CcEEEEEecCccChHHHHHHHHHhccCCCC---------------C--
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDK-AVE-MF-NLRSWVCVSDDFDILRITKSILESITFSPN---------------S-- 264 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~-~~~-~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------------~-- 264 (1096)
+.+.|.|..|.||||++....-+. ... .. ...+.+......-..++.+.+...++.... .
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 478999999999998765544322 111 11 223434333333344555555544432210 0
Q ss_pred ---CCcHHHHHHHHHHHhCCCcEEEEEecCCCC
Q 043647 265 ---LKDLNQIQVQLREAVAGKRFLIVLDDVWSK 294 (1096)
Q Consensus 265 ---~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 294 (1096)
..+...+.+.+...+++- -+||+|.++..
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~~ 188 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHER 188 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTTC-CEEEECCTTSC
T ss_pred eEEEECHHHHHHHHHhhhcCC-cEEEEECCccC
Confidence 023344555555544333 47899999763
No 442
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.07 E-value=0.25 Score=50.72 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|.|||||++.+..-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 443
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.00 E-value=0.25 Score=50.93 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|+|||||.+.++.-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998864
No 444
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.98 E-value=0.25 Score=50.84 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|.|||||++.+..-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 445
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=87.98 E-value=0.37 Score=57.03 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=35.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
..++|.+..++.+...+... ..+.|+|+.|+||||||+.+....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g-------~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK-------RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC-------CEEEEEeCCCCCHHHHHHHHhccC
Confidence 46899988888887777432 378999999999999999998743
No 446
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=87.90 E-value=0.43 Score=52.69 Aligned_cols=87 Identities=10% Similarity=0.139 Sum_probs=51.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcccccc---------ccC-cEEEEEecCcc-ChHHHHHHHHHhccC--------CCCCC
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVE---------MFN-LRSWVCVSDDF-DILRITKSILESITF--------SPNSL 265 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~---------~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~--------~~~~~ 265 (1096)
.-++|.|..|+|||+|+..+.+..... +-+ .++++-+++.. .+.++.+++...=.. ..++.
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 457899999999999999888764431 111 56666676653 455666665442100 01111
Q ss_pred CcHH----HHHHHHHHHh---CCCcEEEEEecC
Q 043647 266 KDLN----QIQVQLREAV---AGKRFLIVLDDV 291 (1096)
Q Consensus 266 ~~~~----~~~~~l~~~l---~~kr~LlVlDdv 291 (1096)
.-.. .....+.+++ +++.+|+++||+
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1111 1122344554 379999999998
No 447
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.87 E-value=0.3 Score=51.18 Aligned_cols=25 Identities=28% Similarity=0.113 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..++|.|+|+.|+||||||..++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3578999999999999999999874
No 448
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=87.84 E-value=0.28 Score=52.51 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=28.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecC
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSD 243 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~ 243 (1096)
...++|+|+|-||+||||+|..++....... ..++-|.+..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G-~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG-KRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCC-CeEEEEeCCC
Confidence 4578999999999999999977776433221 2355565543
No 449
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.84 E-value=0.33 Score=46.28 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998764
No 450
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.74 E-value=0.27 Score=50.96 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|.|||||++.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999998864
No 451
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.73 E-value=0.27 Score=50.47 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|.|||||.+.+..-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998864
No 452
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.71 E-value=0.27 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|.|||||++.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998874
No 453
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=87.68 E-value=0.91 Score=51.20 Aligned_cols=59 Identities=12% Similarity=0.153 Sum_probs=40.8
Q ss_pred HHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccC-hHHHHHHH
Q 043647 189 KILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFD-ILRITKSI 254 (1096)
Q Consensus 189 ~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 254 (1096)
++++.|..-. +-..++|.|..|+|||+|+..+.+.. +-+.++++-+++... +.++.+++
T Consensus 216 rvID~l~Pig----kGqr~~I~g~~g~GKT~L~~~ia~~~---~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA----KGGTAAIPGPAGSGKTVTQHQLAKWS---DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE----TTCEEEECSCCSHHHHHHHHHHHHHS---SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc----cCCeEEeecCCCCCHHHHHHHHHhcc---CCCEEEEEEecccHHHHHHHHHHH
Confidence 4566664322 23578999999999999999987642 345677888887654 45555554
No 454
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.68 E-value=0.27 Score=51.26 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
-.+++|+|+.|.|||||++.++.-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998864
No 455
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.66 E-value=1.7 Score=48.94 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=34.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHh
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILES 257 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 257 (1096)
-.++.|.|.+|+||||+|..++.+...+ =..++|++. ..+..++...++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSl--Ems~~ql~~R~~~~ 247 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSL--EMGKKENIKRLIVT 247 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECS--SSCTTHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEEC--CCCHHHHHHHHHHH
Confidence 4689999999999999998888754332 124666544 34455666665543
No 456
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=87.61 E-value=0.29 Score=54.81 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34689999999999999999998874
No 457
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.61 E-value=0.3 Score=49.94 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 202 ANFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 202 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
....+|+|.|+.|+||||+++.+...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999988763
No 458
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.59 E-value=0.27 Score=47.86 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998874
No 459
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.43 E-value=0.3 Score=49.68 Aligned_cols=25 Identities=28% Similarity=0.113 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
...+|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999988764
No 460
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.41 E-value=0.37 Score=47.05 Aligned_cols=88 Identities=18% Similarity=0.165 Sum_probs=58.2
Q ss_pred hhhhcCCCCcceEEEeccc-ccc-----cCCCCcCCCCccceeeccccccc-----ccccccccCCCCcEEeccCcccCc
Q 043647 548 LSNLLPKFTKLRVLSLKKY-YIT-----ELPHSIGDLKHLRYINLSETMIR-----CLPESICSLCNLQFLILRGCYRLK 616 (1096)
Q Consensus 548 ~~~~~~~~~~Lr~L~L~~~-~~~-----~lp~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~ 616 (1096)
+...+..-+.|+.|+|+++ .|. .+-+.+..-..|+.|+|++|.|. .+-+.+..-+.|++|+|++| .+.
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig 111 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLT 111 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCC
Confidence 4445566778888888875 554 23445556678888888888876 34455566677888888885 343
Q ss_pred c-----cCccccCCCCCceEEeccc
Q 043647 617 K-----LPSNLRNLINLRHLVVTYV 636 (1096)
Q Consensus 617 ~-----lp~~i~~l~~L~~L~l~~~ 636 (1096)
. +-..+..-+.|++|+++++
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCC
Confidence 2 3334445566888888754
No 461
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.40 E-value=0.28 Score=50.50 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|+|||||.+.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998864
No 462
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.38 E-value=0.29 Score=50.94 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|.|||||++.++.-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998863
No 463
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.37 E-value=0.29 Score=48.10 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
.-.|+|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999887643
No 464
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.36 E-value=0.29 Score=51.26 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|.|||||++.++.-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998864
No 465
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.25 E-value=0.32 Score=50.37 Aligned_cols=107 Identities=18% Similarity=0.186 Sum_probs=55.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHH---HHHH--hccCCCCCCCcHHHHHHHHHHH
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITK---SILE--SITFSPNSLKDLNQIQVQLREA 278 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~---~i~~--~l~~~~~~~~~~~~~~~~l~~~ 278 (1096)
-.+++|+|+.|+||||+++.+..-... .+...+++.- .+... +.+ .+.. .++. +. ..+...+...
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~-~~~G~I~~~g-~~i~~--~~~~~~~~v~q~~~gl---~~---~~l~~~la~a 94 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQ-TKSYHIITIE-DPIEY--VFKHKKSIVNQREVGE---DT---KSFADALRAA 94 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHH-HCCCEEEEEE-SSCCS--CCCCSSSEEEEEEBTT---TB---SCHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCC-CCCCEEEEcC-Cccee--ecCCcceeeeHHHhCC---CH---HHHHHHHHHH
Confidence 469999999999999999888763211 1123333221 11000 000 0000 0110 11 1234456666
Q ss_pred hCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEcCchhhh
Q 043647 279 VAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTTCSTDVA 325 (1096)
Q Consensus 279 l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 325 (1096)
+..++=++++|..- +.+....+.... ..|.-|++||.+.++.
T Consensus 95 L~~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 95 LREDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHHCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred HhhCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 65567788899985 223333333222 2466788888776543
No 466
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.20 E-value=0.15 Score=53.79 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=18.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
+..+|+|.|+.|+||||+|+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999988763
No 467
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.15 E-value=0.32 Score=45.86 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
+-|.|+|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999998887653
No 468
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.11 E-value=0.29 Score=52.21 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFD 226 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~ 226 (1096)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999886
No 469
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.01 E-value=0.31 Score=51.44 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
-.+++|+|+.|.|||||++.+..-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 368999999999999999888753
No 470
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.95 E-value=0.66 Score=46.26 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=25.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNL 235 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~ 235 (1096)
..+|.|-|+.|+||||+++.+........+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc
Confidence 36899999999999999999987654434443
No 471
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=86.90 E-value=1.1 Score=50.75 Aligned_cols=59 Identities=12% Similarity=0.174 Sum_probs=40.3
Q ss_pred HHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCcc-ChHHHHHHH
Q 043647 189 KILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDF-DILRITKSI 254 (1096)
Q Consensus 189 ~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i 254 (1096)
++++.|..-. +-..++|.|..|+|||+|+..+.+.. +-+.++++-+++.. ...++++++
T Consensus 221 rvID~l~Pig----rGqr~~Ifgg~g~GKT~L~~~ia~~~---~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 221 RVIDTFFPVT----KGGAAAVPGPFGAGKTVVQHQIAKWS---DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHHSCCB----TTCEEEEECCTTSCHHHHHHHHHHHS---SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhhccCCcc----CCCEEeeecCCCccHHHHHHHHHhcc---CCCEEEEEEecccHHHHHHHHHHH
Confidence 4566664332 23578999999999999999988743 34567777777663 445555444
No 472
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.84 E-value=0.34 Score=47.00 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
+.|.|.|+.|+||||||.++....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999988753
No 473
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=86.58 E-value=0.38 Score=48.79 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcccc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKA 229 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 229 (1096)
...+|+|.|+.|+||||+++.+.....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 347899999999999999999987544
No 474
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.43 E-value=0.36 Score=52.83 Aligned_cols=24 Identities=29% Similarity=0.202 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..+++|+|+.|.|||||++.+...
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999863
No 475
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=86.42 E-value=0.36 Score=47.71 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999988865
No 476
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=86.36 E-value=0.38 Score=53.79 Aligned_cols=26 Identities=35% Similarity=0.363 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
..++|+|+|.+|+||||+|..+....
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999998887654
No 477
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=86.32 E-value=0.96 Score=44.44 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDDKAVE 231 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~~~~~ 231 (1096)
.|+|=|..|+||||.++.+++.....
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~ 27 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 47889999999999999998765443
No 478
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=86.23 E-value=1.3 Score=52.02 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
-.+++|+|+.|.|||||++.+..-
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 368999999999999999888763
No 479
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.15 E-value=0.44 Score=46.39 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998864
No 480
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=86.12 E-value=0.37 Score=49.86 Aligned_cols=23 Identities=39% Similarity=0.419 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.+++|+|+.|.|||||.+.++.-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998864
No 481
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=86.10 E-value=2.8 Score=42.49 Aligned_cols=103 Identities=15% Similarity=0.062 Sum_probs=52.8
Q ss_pred EEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCC--------CCC-----CCcHHHHHH
Q 043647 207 IPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFS--------PNS-----LKDLNQIQV 273 (1096)
Q Consensus 207 i~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~--------~~~-----~~~~~~~~~ 273 (1096)
+.|+|+.|.|||.+|..+.... -..++++ +....-..+..+.+.. ++.. ... ..+.+.+..
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~----~~~~liv-~P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~~~l~~ 184 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL----STPTLIV-VPTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTYDSAYV 184 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS----CSCEEEE-ESSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc----CCCEEEE-eCCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeHHHHHh
Confidence 7789999999999998776542 1223444 3222112233333322 2111 000 012233333
Q ss_pred HHHHHhCCCcEEEEEecCCCCChhhHHHhhcccCCCCCCcEEEEEc
Q 043647 274 QLREAVAGKRFLIVLDDVWSKNYSLWNTLKSPFRAGASGSKILVTT 319 (1096)
Q Consensus 274 ~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 319 (1096)
... .+.++--+||+|++.......+..+...+. ...++.+|.
T Consensus 185 ~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSA 226 (237)
T 2fz4_A 185 NAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTA 226 (237)
T ss_dssp THH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEE
T ss_pred hHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEec
Confidence 332 334455699999998765556666655543 233444453
No 482
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.03 E-value=0.37 Score=49.34 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
...|+|.|..|+||||+++.+....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999988753
No 483
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=85.96 E-value=0.64 Score=52.06 Aligned_cols=84 Identities=20% Similarity=0.280 Sum_probs=48.6
Q ss_pred eEEEEEcCCCCcHHHHH-HHHhccccccccCc-EEEEEecCcc-ChHHHHHHHHHhccC--------CCCCCCcH----H
Q 043647 205 SLIPIVGMAGVGKTTLA-RVAFDDKAVEMFNL-RSWVCVSDDF-DILRITKSILESITF--------SPNSLKDL----N 269 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~--------~~~~~~~~----~ 269 (1096)
.-++|+|..|+|||+|| ..+.+.. ..+. ++++-+++.. .+.++.+.+...=.. ..++.... .
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~---~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~ 240 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ---GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAP 240 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC---TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh---cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHH
Confidence 45799999999999996 5666643 2453 4677777664 344555555432100 11111111 1
Q ss_pred HHHHHHHHHh--CCCcEEEEEecC
Q 043647 270 QIQVQLREAV--AGKRFLIVLDDV 291 (1096)
Q Consensus 270 ~~~~~l~~~l--~~kr~LlVlDdv 291 (1096)
.....+.+++ +|+.+|+++||+
T Consensus 241 ~~a~tiAEyfrd~G~dVLli~Dsl 264 (507)
T 1fx0_A 241 YTGAALAEYFMYRERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHcCCcEEEEEecH
Confidence 1122233333 689999999998
No 484
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.86 E-value=0.34 Score=50.93 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFD 226 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~ 226 (1096)
-.++.|+|++|+||||||..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999988775
No 485
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=85.86 E-value=1 Score=50.31 Aligned_cols=96 Identities=19% Similarity=0.245 Sum_probs=54.8
Q ss_pred HHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHH-HHHhccccccccCc-EEEEEecCcc-ChHHHHHHHHHhccCCC---
Q 043647 189 KILEMVLRDEPTDANFSLIPIVGMAGVGKTTLA-RVAFDDKAVEMFNL-RSWVCVSDDF-DILRITKSILESITFSP--- 262 (1096)
Q Consensus 189 ~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~--- 262 (1096)
+.++.|..-. +-..++|.|..|+|||+|| ..+.+.. ..+. ++++-+++.. .+.++.+.+.+.=....
T Consensus 151 kaID~l~Pig----rGQR~~Ifg~~g~GKT~l~l~~I~n~~---~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvv 223 (513)
T 3oaa_A 151 KAVDSMIPIG----RGQRELIIGDRQTGKTALAIDAIINQR---DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIV 223 (513)
T ss_dssp HHHHHHSCCB----TTCBCEEEESSSSSHHHHHHHHHHTTS---SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEE
T ss_pred eeeccccccc----cCCEEEeecCCCCCcchHHHHHHHhhc---cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEE
Confidence 3556664332 2245799999999999996 5666532 3343 5678788764 45566666554311110
Q ss_pred --CCCCc--HHH-----HHHHHHHHh--CCCcEEEEEecC
Q 043647 263 --NSLKD--LNQ-----IQVQLREAV--AGKRFLIVLDDV 291 (1096)
Q Consensus 263 --~~~~~--~~~-----~~~~l~~~l--~~kr~LlVlDdv 291 (1096)
...++ ... ....+.+++ +|+.+||++||+
T Consensus 224 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 224 VVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred EEECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 01111 111 111233333 689999999998
No 486
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.83 E-value=1.1 Score=59.31 Aligned_cols=86 Identities=17% Similarity=0.115 Sum_probs=57.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecCccChHHHHHHHHHhccCCCC-----CCCcHHHHHHHHHH
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSDDFDILRITKSILESITFSPN-----SLKDLNQIQVQLRE 277 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 277 (1096)
.-+++.|+|++|+||||||.++....... -..++|++.....+... ++.++.... +..+.+++...++.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~-G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 34699999999999999999888754322 23678888777666432 445554321 23456666666655
Q ss_pred Hh-CCCcEEEEEecCCCC
Q 043647 278 AV-AGKRFLIVLDDVWSK 294 (1096)
Q Consensus 278 ~l-~~kr~LlVlDdv~~~ 294 (1096)
.. +.+.-+||+|-+...
T Consensus 456 lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHTCCSEEEESCGGGC
T ss_pred HHHhcCCcEEEECCHHHh
Confidence 44 345669999998543
No 487
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=85.80 E-value=0.31 Score=51.60 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
-.+++|+|+.|.|||||++.+..-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 358999999999999999998763
No 488
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=85.78 E-value=0.37 Score=50.17 Aligned_cols=22 Identities=41% Similarity=0.685 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.++|+|+.|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988864
No 489
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=85.63 E-value=0.4 Score=50.07 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEec
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVS 242 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~ 242 (1096)
++|+|.|-||+||||+|..+........ ..+.-|...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G-~~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMG-KTIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTT-CCEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCC-CcEEEEcCC
Confidence 5788899999999999977776433222 235555554
No 490
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=85.44 E-value=0.37 Score=45.59 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 043647 206 LIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 206 vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988764
No 491
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=85.40 E-value=0.77 Score=47.08 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 188 AKILEMVLRDEPTDANFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 188 ~~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..+..|+... .++...|.++|++|+|||.+|.++++.
T Consensus 91 ~~l~~~l~~~---~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 91 SVFLGWATKK---FGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHTTC---STTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCC---CCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3466666332 123457999999999999999999873
No 492
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=85.38 E-value=0.43 Score=45.77 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
.--|+|+|.+|+|||||+..+....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3568999999999999999887653
No 493
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=85.26 E-value=0.45 Score=50.35 Aligned_cols=39 Identities=21% Similarity=0.136 Sum_probs=26.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccCcEEEEEecC
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDDKAVEMFNLRSWVCVSD 243 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~ 243 (1096)
.++|+|.|-||+||||+|..++....... ..+.-|.+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G-~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMG-KKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTT-CCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCC-CeEEEEecCC
Confidence 46888999999999999987776433221 1355555543
No 494
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=85.21 E-value=0.96 Score=50.70 Aligned_cols=99 Identities=20% Similarity=0.235 Sum_probs=55.6
Q ss_pred HHHHHHhcCCCCCCCceEEEEEcCCCCcHHHHH-HHHhccccc-----cccC-cEEEEEecCcc-ChHHHHHHHHHhccC
Q 043647 189 KILEMVLRDEPTDANFSLIPIVGMAGVGKTTLA-RVAFDDKAV-----EMFN-LRSWVCVSDDF-DILRITKSILESITF 260 (1096)
Q Consensus 189 ~l~~~L~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~-----~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~ 260 (1096)
+.++.+..-. +-.-++|+|..|+|||+|| ..+.+.... .+.+ .++++-+++.. .+.++.+.+...=..
T Consensus 151 raID~l~Pig----rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m 226 (510)
T 2ck3_A 151 KAVDSLVPIG----RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAM 226 (510)
T ss_dssp HHHHHHSCCB----TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCG
T ss_pred eeeccccccc----cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCc
Confidence 4566664332 2345799999999999995 455554321 1245 36777777764 455666666542111
Q ss_pred C-------CCCCCcHHH-----HHHHHHHHh--CCCcEEEEEecC
Q 043647 261 S-------PNSLKDLNQ-----IQVQLREAV--AGKRFLIVLDDV 291 (1096)
Q Consensus 261 ~-------~~~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv 291 (1096)
. ..+...... ....+.+++ +|+.+|+++||+
T Consensus 227 ~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 227 KYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp GGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred ccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 0 111111111 112234444 589999999998
No 495
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=85.20 E-value=0.35 Score=50.40 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
+...|+|.|..|+||||+|+.+...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3579999999999999999888764
No 496
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=85.07 E-value=0.43 Score=47.19 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcccc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDDKA 229 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~~~ 229 (1096)
.+|+|.|+.|+||||+|+.+.....
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999988543
No 497
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=85.07 E-value=0.5 Score=44.87 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 204 FSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 204 ~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
.--|.|+|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 446789999999999999988764
No 498
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=85.04 E-value=0.56 Score=45.12 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 043647 203 NFSLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 203 ~~~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
+...|+|+|.+|+|||||+..+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999988764
No 499
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=85.00 E-value=0.36 Score=56.73 Aligned_cols=51 Identities=22% Similarity=0.295 Sum_probs=31.6
Q ss_pred CccccchHHHHHHHHHHhcCCCC---C---CCceEEEEEcCCCCcHHHHHHHHhccc
Q 043647 178 PAVFGRDEDKAKILEMVLRDEPT---D---ANFSLIPIVGMAGVGKTTLARVAFDDK 228 (1096)
Q Consensus 178 ~~~vgr~~~~~~l~~~L~~~~~~---~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 228 (1096)
+.++|.+..+..+.-.+...... + ..-.-|.++|++|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 34677776555554444322100 0 001148899999999999999998753
No 500
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=84.94 E-value=0.45 Score=45.71 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 043647 205 SLIPIVGMAGVGKTTLARVAFDD 227 (1096)
Q Consensus 205 ~vi~I~G~gGiGKTtLa~~v~~~ 227 (1096)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998865
Done!