BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043648
         (841 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TD7|A Chain A, Crysal Structure Of The Mimivirus Sulfhydryl Oxidase R596
          Length = 295

 Score = 30.8 bits (68), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/75 (20%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 354 FKTFLTAMNDCQPVSITTDQDKAI----QIAVAKVFPEVRHCISKWHVELYNCINLTETI 409
           +K +  ++ D  P  +  +  K      + A+       RH ++KW  +++N +N    +
Sbjct: 70  YKNYFISLGDVLPCRLCRESYKKFITTGKTALTNEVLRNRHTLTKWFYDVHNAVNNKLEV 129

Query: 410 EEFELSWNSILDKYD 424
            ++ LS+  +++KY+
Sbjct: 130 -DYGLSYEDVVNKYE 143


>pdb|3GWN|A Chain A, Crystal Structure Of The Fad Binding Domain From Mimivirus
           Sulfhydryl Oxidase R596
 pdb|3GWN|B Chain B, Crystal Structure Of The Fad Binding Domain From Mimivirus
           Sulfhydryl Oxidase R596
          Length = 114

 Score = 30.0 bits (66), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 354 FKTFLTAMNDCQPVSITTDQDKAI----QIAVAKVFPEVRHCISKWHVELYNCINLTETI 409
           +K +  ++ D  P  +  +  K      + A+       RH ++KW  +++N +N    +
Sbjct: 36  YKNYFISLGDVLPCRLCRESYKKFITTGKTALTNEVLRNRHTLTKWFYDVHNAVNNKLEV 95

Query: 410 EEFELSWNSILDKYD 424
            ++ LS+  +++KY+
Sbjct: 96  -DYGLSYEDVVNKYE 109


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,303,488
Number of Sequences: 62578
Number of extensions: 992979
Number of successful extensions: 1798
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1793
Number of HSP's gapped (non-prelim): 9
length of query: 841
length of database: 14,973,337
effective HSP length: 107
effective length of query: 734
effective length of database: 8,277,491
effective search space: 6075678394
effective search space used: 6075678394
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)