Query 043648
Match_columns 841
No_of_seqs 333 out of 1120
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 11:49:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043648.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043648hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 91.6 0.48 1.7E-05 39.9 7.0 56 73-137 17-73 (76)
2 1wj2_A Probable WRKY transcrip 89.1 0.45 1.5E-05 40.2 4.8 56 73-137 20-76 (78)
3 2rpr_A Flywch-type zinc finger 74.4 3.3 0.00011 35.5 4.6 34 94-138 41-74 (87)
4 3kks_A Integrase, IN; beta-str 70.4 9.1 0.00031 35.0 7.1 67 304-380 2-68 (152)
5 3hph_A Integrase, IN; protein- 45.9 34 0.0012 33.6 6.8 66 305-380 61-126 (219)
6 1c0m_A Protein (integrase); HI 41.5 57 0.0019 32.7 7.7 71 304-379 10-80 (238)
7 1cxq_A Avian sarcoma virus int 40.1 80 0.0027 29.2 8.1 71 304-379 11-81 (162)
8 3l3u_A POL polyprotein; DNA in 40.0 49 0.0017 30.6 6.5 64 304-377 9-72 (163)
9 3pyi_B Spindle assembly abnorm 37.6 16 0.00054 33.7 2.4 26 787-812 36-61 (170)
10 2x78_A Integrase; viral protei 34.9 87 0.003 29.9 7.6 69 305-379 14-83 (200)
11 2lju_A Putative oxidoreductase 30.2 51 0.0017 29.5 4.4 28 49-80 60-87 (108)
12 3av9_A Integrase, IN; protein- 26.9 98 0.0034 29.3 6.3 66 304-379 29-94 (183)
13 2jya_A AGR_C_3324P, uncharacte 25.4 35 0.0012 30.4 2.4 27 50-80 53-79 (106)
14 1bco_A MUA domain II, bacterio 22.8 1.3E+02 0.0043 31.8 6.8 71 304-377 16-94 (327)
15 1c6v_A Protein (SIV integrase) 21.9 1.6E+02 0.0054 26.6 6.5 62 305-376 10-71 (164)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=91.57 E-value=0.48 Score=39.89 Aligned_cols=56 Identities=18% Similarity=0.382 Sum_probs=41.1
Q ss_pred CcEEEEeeeccCCCCCCeEEEEeeccccccccccccCCccceEEEEeC-cceEEEEEEecCCCCCC
Q 043648 73 GFSSKVCHFSRPRPDEPIVFREFVCGREGLKRRHGESCDAMLRIELKG-QNKWVVTKFVKEHSHPM 137 (841)
Q Consensus 73 GF~vr~~~s~rsk~~g~i~~~~fvCsreG~~Rk~r~gC~a~i~v~~~~-~~~W~V~~~~~eHNH~l 137 (841)
||..|+--.+-.+ +...-+..|.|+ -.||||+=.|.+.. +..-.++.+..+|||++
T Consensus 17 Gy~WRKYGQK~ik-gs~~PRsYYrCt--------~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~ 73 (76)
T 2ayd_A 17 GYRWRKYGQKSVK-GSPYPRSYYRCS--------SPGCPVKKHVERSSHDTKLLITTYEGKHDHDM 73 (76)
T ss_dssp SSCEEEEEEECCT-TCSSCEEEEEEC--------STTCCCEEEEEECSSSTTEEEEEEESCCSSCC
T ss_pred CchhhhCcccccC-CCCCceeEeEcC--------CCCCCceeeEEEECCCCCEEEEEEccCcCCCC
Confidence 7777764332222 222335678998 46999999999975 77888999999999996
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=89.14 E-value=0.45 Score=40.24 Aligned_cols=56 Identities=20% Similarity=0.339 Sum_probs=39.8
Q ss_pred CcEEEEeeeccCCCCCCeEEEEeeccccccccccccCCccceEEEEeC-cceEEEEEEecCCCCCC
Q 043648 73 GFSSKVCHFSRPRPDEPIVFREFVCGREGLKRRHGESCDAMLRIELKG-QNKWVVTKFVKEHSHPM 137 (841)
Q Consensus 73 GF~vr~~~s~rsk~~g~i~~~~fvCsreG~~Rk~r~gC~a~i~v~~~~-~~~W~V~~~~~eHNH~l 137 (841)
||..|+--.+-.+ +...-+..|.|+ ..||+|+=.|.+.. +..-.++.+..+|||++
T Consensus 20 Gy~WRKYGQK~ik-gs~~PRsYYrCt--------~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~ 76 (78)
T 1wj2_A 20 GYRWRKYGQKVVK-GNPYPRSYYKCT--------TPGCGVRKHVERAATDPKAVVTTYEGKHNHDL 76 (78)
T ss_dssp SSCBCCCEEECCT-TCSSCEEEEEEE--------CSSCEEEEEEEEETTTTSEEEEEEESCCSSCC
T ss_pred CchhhhCcccccC-CCcCeeEEeecC--------cCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCC
Confidence 6666653222222 122345678998 46999999999975 77788899999999986
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=74.41 E-value=3.3 Score=35.51 Aligned_cols=34 Identities=12% Similarity=0.281 Sum_probs=22.6
Q ss_pred EeeccccccccccccCCccceEEEEeCcceEEEEEEecCCCCCCC
Q 043648 94 EFVCGREGLKRRHGESCDAMLRIELKGQNKWVVTKFVKEHSHPMV 138 (841)
Q Consensus 94 ~fvCsreG~~Rk~r~gC~a~i~v~~~~~~~W~V~~~~~eHNH~l~ 138 (841)
...|++. ++.+|+|++..... + |. ....||||+.
T Consensus 41 yWrC~~~-----~~~kCrARi~T~~~--~---~~-~~~~HnH~p~ 74 (87)
T 2rpr_A 41 YWMCRDQ-----ARLGCRSRAITQGH--R---IM-VMRSHCHQPD 74 (87)
T ss_dssp EEEEGGG-----TTSCCCCEEEEETT--E---EE-ECSCCSSCCC
T ss_pred EEEecCC-----CCCCCCEEEEEcCC--C---EE-CCCCcCCCCc
Confidence 5777743 14589999887642 2 32 5678999863
No 4
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=70.36 E-value=9.1 Score=35.03 Aligned_cols=67 Identities=3% Similarity=0.093 Sum_probs=49.2
Q ss_pred CCeeeecccccccccCcceeeEEEEecCCcEEEEEEeeccCCChhhHHHHHHHHHhhhcCCCCeEecccccHHHHHH
Q 043648 304 GDAVTLDTRYRVYQYNVPFAPFTGINHHGQMILFGCALLLDDSEASFVWLFKTFLTAMNDCQPVSITTDQDKAIQIA 380 (841)
Q Consensus 304 ~dVv~~D~Ty~tnky~~pL~~~~gvn~~~q~~~~g~alv~~Et~es~~Wl~~~f~~~m~~~~P~~IiTD~d~al~~A 380 (841)
++++.+|.|+..++ +.++.+|...+.+ +++.+ .+++.+...-++..+....+ |++|.||+.....+.
T Consensus 2 n~~w~~D~t~~~~~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~f~s~ 68 (152)
T 3kks_A 2 SHLWQMDNTHWNKT-----IIWVAVETNSGLV-EAQVI-PEETALQVALCILQLIQRYT---VLHLHSDNGPCFTAH 68 (152)
T ss_dssp CCEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSSCHHHHHHHHHHHHHHSC---CSEEEECSCHHHHSH
T ss_pred CcEEEEeeeeeCCE-----EEEEEEEcCCCcE-EEEEe-CCcCHHHHHHHHHHHHHHhC---CcEEecCCchHhhHH
Confidence 46788999988543 5777888888766 45544 57787777777766666554 999999999887643
No 5
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=45.94 E-value=34 Score=33.57 Aligned_cols=66 Identities=12% Similarity=0.153 Sum_probs=46.7
Q ss_pred CeeeecccccccccCcceeeEEEEecCCcEEEEEEeeccCCChhhHHHHHHHHHhhhcCCCCeEecccccHHHHHH
Q 043648 305 DAVTLDTRYRVYQYNVPFAPFTGINHHGQMILFGCALLLDDSEASFVWLFKTFLTAMNDCQPVSITTDQDKAIQIA 380 (841)
Q Consensus 305 dVv~~D~Ty~tnky~~pL~~~~gvn~~~q~~~~g~alv~~Et~es~~Wl~~~f~~~m~~~~P~~IiTD~d~al~~A 380 (841)
+++.+|.|+..++ +.++.+|...+.+ +++. +.+.+.+...-++..+....+ |.+|.||+.....++
T Consensus 61 ~~w~~D~t~~~~~-----y~~~~iD~~Sr~~-~~~~-~~~~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~F~s~ 126 (219)
T 3hph_A 61 DHWQVDYTHYEDK-----IILVWVETNSGLI-YAER-VKGETGQEFRVQTMKWYAMFA---PKSLQSDNGPAFVAE 126 (219)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEE-ESCCCHHHHHHHHHHHHHHHC---CCEEEECCCHHHHSH
T ss_pred ceEEEEEecCCCE-----EEEEEEeCCCCcE-EEEE-eCCCCHHHHHHHHHHHHHHhC---CcEEEeCCCchhhhH
Confidence 5666888776543 5678888888877 4444 566777776666666555554 999999999887644
No 6
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=41.49 E-value=57 Score=32.68 Aligned_cols=71 Identities=10% Similarity=-0.004 Sum_probs=50.1
Q ss_pred CCeeeecccccccccCcceeeEEEEecCCcEEEEEEeeccCCChhhHHHHHHHHHhhhcCCCCeEecccccHHHHH
Q 043648 304 GDAVTLDTRYRVYQYNVPFAPFTGINHHGQMILFGCALLLDDSEASFVWLFKTFLTAMNDCQPVSITTDQDKAIQI 379 (841)
Q Consensus 304 ~dVv~~D~Ty~tnky~~pL~~~~gvn~~~q~~~~g~alv~~Et~es~~Wl~~~f~~~m~~~~P~~IiTD~d~al~~ 379 (841)
.+++.+|.||..... +-.+.++.+|...+.++ |+.+- .++.+...-+|+......+ .|.+|.||+.....+
T Consensus 10 ~~~w~~D~~~~~~~~-g~~yl~~~iD~~Sr~i~-~~~~~-~~~~~~v~~~l~~~~~~~g--~p~~i~sDnG~~f~s 80 (238)
T 1c0m_A 10 LQIWQTDFTLEPRMA-PRSWLAVTVDTASSAIV-VTQHG-RVTSVAVQHHWATAIAVLG--RPKAIKTDNGSCFTS 80 (238)
T ss_dssp TSEEEEEEEECGGGC-SSCEEEEEEETTTCCEE-EEEES-SCCHHHHHHHHHHHHHHHC--CCSEEEECSCHHHHS
T ss_pred CCEEEEeeccccccC-CCEEEEEEEECCCCCEE-EEEcc-CCCHHHHHHHHHHHHHHhC--CCcEEEECCCCcccc
Confidence 367889999865433 33667778888876654 55554 7787777776666655554 489999999988754
No 7
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=40.08 E-value=80 Score=29.16 Aligned_cols=71 Identities=10% Similarity=-0.023 Sum_probs=47.8
Q ss_pred CCeeeecccccccccCcceeeEEEEecCCcEEEEEEeeccCCChhhHHHHHHHHHhhhcCCCCeEecccccHHHHH
Q 043648 304 GDAVTLDTRYRVYQYNVPFAPFTGINHHGQMILFGCALLLDDSEASFVWLFKTFLTAMNDCQPVSITTDQDKAIQI 379 (841)
Q Consensus 304 ~dVv~~D~Ty~tnky~~pL~~~~gvn~~~q~~~~g~alv~~Et~es~~Wl~~~f~~~m~~~~P~~IiTD~d~al~~ 379 (841)
.+++.+|.||..... +-.+.++.+|...+.+ +|+.+- +.+.+...-+|+.+....+ .|.+|.||+.....+
T Consensus 11 ~~~~~~D~~~~~~~~-g~~yl~~~iD~~Sr~i-~~~~~~-~~~~~~v~~~l~~~~~~~g--~p~~i~sDnG~~f~s 81 (162)
T 1cxq_A 11 LQIWQTDFTLEPRMA-PRSWLAVTVDTASSAI-VVTQHG-RVTSVAAQHHWATAIAVLG--RPKAIKTDNGSCFTS 81 (162)
T ss_dssp CCEEEEEEEECGGGT-TSCEEEEEEETTTCCE-EEEEES-SCCHHHHHHHHHHHHHHHC--CCSEEECCSCHHHHS
T ss_pred CCEEEeeeeecccCC-CCEEEEEEEEcCCCeE-EEEECC-CccHHHHHHHHHHHHHHHC--CCeEEEeCCchhhhh
Confidence 367888888865433 3456778888887766 455554 6777766555555554443 488999999987754
No 8
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=40.02 E-value=49 Score=30.58 Aligned_cols=64 Identities=8% Similarity=0.039 Sum_probs=45.8
Q ss_pred CCeeeecccccccccCcceeeEEEEecCCcEEEEEEeeccCCChhhHHHHHHHHHhhhcCCCCeEecccccHHH
Q 043648 304 GDAVTLDTRYRVYQYNVPFAPFTGINHHGQMILFGCALLLDDSEASFVWLFKTFLTAMNDCQPVSITTDQDKAI 377 (841)
Q Consensus 304 ~dVv~~D~Ty~tnky~~pL~~~~gvn~~~q~~~~g~alv~~Et~es~~Wl~~~f~~~m~~~~P~~IiTD~d~al 377 (841)
.+++.+|.||..++ +.++.+|...+.+ +++.+ .+++.+...-++..+...++ +.+|.||+....
T Consensus 9 ~~~w~~D~t~~~g~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~~---~~~i~sD~G~~f 72 (163)
T 3l3u_A 9 PGIWQLDCTHLEGK-----VILVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRWP---VKTVHTDNGSNF 72 (163)
T ss_dssp TTEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSCCHHHHHHHHHHHHHHSC---CCEEEECCCGGG
T ss_pred CCEEEEEecccCCc-----EEEEEEecCCCcE-EEEEe-CCCcHHHHHHHHHHHHHHcC---CcEEeecChHhh
Confidence 36788999998653 5778888888766 55555 56677777776666555554 589999997754
No 9
>3pyi_B Spindle assembly abnormal protein 6; beta-sandwich, dimer, alpha-beta protein, structural protein cytoplasmic, centriolar; HET: PG4 MES; 2.10A {Caenorhabditis elegans}
Probab=37.64 E-value=16 Score=33.67 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=23.0
Q ss_pred EEeecccCCCCCCCceEEEEEeehhc
Q 043648 787 INLKLHDYSKTPSAELEVKFQLSKVT 812 (841)
Q Consensus 787 ~~~k~~~~~~~~~~~~~~~~~l~~~t 812 (841)
++|||-+-....+|++|++|+||++.
T Consensus 36 v~LKI~E~rne~~geKeL~feLSrdd 61 (170)
T 3pyi_B 36 VKLKISEQRNETSGEKELKFEISRSD 61 (170)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEECTT
T ss_pred heeeehhhhccccCCceeEEEeccCC
Confidence 78999887777789999999999985
No 10
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=34.93 E-value=87 Score=29.88 Aligned_cols=69 Identities=13% Similarity=-0.011 Sum_probs=45.9
Q ss_pred Ceeeecc-cccccccCcceeeEEEEecCCcEEEEEEeeccCCChhhHHHHHHHHHhhhcCCCCeEecccccHHHHH
Q 043648 305 DAVTLDT-RYRVYQYNVPFAPFTGINHHGQMILFGCALLLDDSEASFVWLFKTFLTAMNDCQPVSITTDQDKAIQI 379 (841)
Q Consensus 305 dVv~~D~-Ty~tnky~~pL~~~~gvn~~~q~~~~g~alv~~Et~es~~Wl~~~f~~~m~~~~P~~IiTD~d~al~~ 379 (841)
+++.+|. ++.... ++..+.++.+|...+.+. ++.+ .+.+.+...-+|+.+. ....|.+|.||+.....+
T Consensus 14 ~~~~~D~~~~~~~~-~g~~y~~~~iD~~Sr~~~-~~~~-~~~~~~~~~~~l~~~~---~~g~p~~i~sDnG~~f~s 83 (200)
T 2x78_A 14 DKFFIDYIGPLPPS-QGYLYVLVVVDGMTGFTW-LYPT-KAPSTSATVKSLNVLT---SIAIPRVIHSDQGAAFTS 83 (200)
T ss_dssp SEEEEEEECCCSCB-TTBCEEEEEEETTTCCEE-EEEE-SSSCHHHHHHHHHHHT---TTCCCSEEEECSCHHHHS
T ss_pred cEEEEEEeCCCccC-CCCeEEEEEEeCCCCcEE-EEEC-CCCCHHHHHHHHHHHH---HhCCCcEEEecCCcceeh
Confidence 6777786 554433 446778888888877664 5555 6666666554444433 335789999999887654
No 11
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=30.24 E-value=51 Score=29.49 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=23.3
Q ss_pred CCCCCeeCCHHHHHHHHHHHHHhcCcEEEEee
Q 043648 49 PYVGMEFHTEDAAKTFYDEYARRVGFSSKVCH 80 (841)
Q Consensus 49 P~~Gm~F~S~eeA~~fy~~YA~~~GF~vr~~~ 80 (841)
-.+.+.|+|.|+|- +||.++|....+..
T Consensus 60 ~qv~L~F~skE~Ai----ayAek~G~~y~V~e 87 (108)
T 2lju_A 60 QQVCLSFTTRELAI----AYAVAHKIDYTVLQ 87 (108)
T ss_dssp CCSCEEESSHHHHH----HHHHHTTCEEEEEC
T ss_pred ccceEecCCHHHHH----HHHHHcCCEEEEec
Confidence 34678999999997 57999999988764
No 12
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=26.93 E-value=98 Score=29.32 Aligned_cols=66 Identities=8% Similarity=0.027 Sum_probs=40.5
Q ss_pred CCeeeecccccccccCcceeeEEEEecCCcEEEEEEeeccCCChhhHHHHHHHHHhhhcCCCCeEecccccHHHHH
Q 043648 304 GDAVTLDTRYRVYQYNVPFAPFTGINHHGQMILFGCALLLDDSEASFVWLFKTFLTAMNDCQPVSITTDQDKAIQI 379 (841)
Q Consensus 304 ~dVv~~D~Ty~tnky~~pL~~~~gvn~~~q~~~~g~alv~~Et~es~~Wl~~~f~~~m~~~~P~~IiTD~d~al~~ 379 (841)
.+++.+|.|+..++| .++.+|...+.+ +|+. +.+++.+...-++..+.... .+++|.||+.....+
T Consensus 29 ~~~w~~D~~~~~g~~-----~l~~vD~~Sr~~-~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~i~sDnG~ef~s 94 (183)
T 3av9_A 29 PGIWQLDCTHLEGKV-----ILVAVHVASGYI-EAEV-IPAETGQETAYFLLKLAGRW---PVKTVHTDNGSNFTS 94 (183)
T ss_dssp TTEEEEEEEEETTEE-----EEEEEETTTTEE-EEEE-ESSCCHHHHHHHHHHHHHHS---CCCEEECSSHHHHHC
T ss_pred CCEEEEeccccCCcE-----EEEEEECCCCCE-EEEE-eCCccchHHHHHHHHHHHHc---CCcEEEecCchhcch
Confidence 356777777763332 455668777766 5554 45566655554444444333 349999999887753
No 13
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=25.36 E-value=35 Score=30.45 Aligned_cols=27 Identities=33% Similarity=0.553 Sum_probs=22.5
Q ss_pred CCCCeeCCHHHHHHHHHHHHHhcCcEEEEee
Q 043648 50 YVGMEFHTEDAAKTFYDEYARRVGFSSKVCH 80 (841)
Q Consensus 50 ~~Gm~F~S~eeA~~fy~~YA~~~GF~vr~~~ 80 (841)
.+.+.|+|.|+|- +||.++|....+..
T Consensus 53 qv~L~F~skE~Ai----ayAek~G~~y~V~e 79 (106)
T 2jya_A 53 QVKLTFETQEQAE----AYAQRKGIEYRVIL 79 (106)
T ss_dssp EEEEEESSHHHHH----HHHHHHTCEEEECC
T ss_pred cceEecCCHHHHH----HHHHHcCCEEEEeC
Confidence 3568999999997 57999999988864
No 14
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=22.80 E-value=1.3e+02 Score=31.77 Aligned_cols=71 Identities=14% Similarity=0.047 Sum_probs=48.9
Q ss_pred CCeeeecccccccc----cCc--ceeeEEEEecCCcEEEEEEeeccCCChhhHHHHHHHHHhhhcCCCCe--EecccccH
Q 043648 304 GDAVTLDTRYRVYQ----YNV--PFAPFTGINHHGQMILFGCALLLDDSEASFVWLFKTFLTAMNDCQPV--SITTDQDK 375 (841)
Q Consensus 304 ~dVv~~D~Ty~tnk----y~~--pL~~~~gvn~~~q~~~~g~alv~~Et~es~~Wl~~~f~~~m~~~~P~--~IiTD~d~ 375 (841)
++++.+|.|+..-. .+. .....+.+|...+.+ +|+.+...++.++..-+|.......+ .|. .|.+|+..
T Consensus 16 ~~~w~~D~t~~d~~~~~~~g~~~r~~l~~~iD~~SR~i-vg~~~~~~~~~~~v~~aL~~a~~~~G--~P~~~~i~sDnG~ 92 (327)
T 1bco_A 16 MQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTRKI-LGWRCDVSENIDSIRLSFMDVVTRYG--IPEDFHITIDNTR 92 (327)
T ss_dssp TTEEEEEEEECSBCEECTTSCEECCEEEEEEETTTCCE-EEEEEESSCCHHHHHHHHHHHHHHHC--EESSCEEECCCTT
T ss_pred CcEEEecCCEEEEEEECCCCccceeEEEEEEECCCCcE-EEEEEECCCCHHHHHHHHHHHHHhcC--CCCCcEEEeeCch
Confidence 47888888865432 121 345667788877655 78888888888887777666555443 577 99999876
Q ss_pred HH
Q 043648 376 AI 377 (841)
Q Consensus 376 al 377 (841)
..
T Consensus 93 ~f 94 (327)
T 1bco_A 93 GA 94 (327)
T ss_dssp ST
T ss_pred hh
Confidence 54
No 15
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Probab=21.86 E-value=1.6e+02 Score=26.62 Aligned_cols=62 Identities=6% Similarity=0.020 Sum_probs=38.7
Q ss_pred CeeeecccccccccCcceeeEEEEecCCcEEEEEEeeccCCChhhHHHHHHHHHhhhcCCCCeEecccccHH
Q 043648 305 DAVTLDTRYRVYQYNVPFAPFTGINHHGQMILFGCALLLDDSEASFVWLFKTFLTAMNDCQPVSITTDQDKA 376 (841)
Q Consensus 305 dVv~~D~Ty~tnky~~pL~~~~gvn~~~q~~~~g~alv~~Et~es~~Wl~~~f~~~m~~~~P~~IiTD~d~a 376 (841)
+++.+|.|+..+ . +.++.+|...+.+ +++ .+.+.+.+.+.-++..+.... .|.+|.+|+...
T Consensus 10 ~~w~~D~~~~~g----~-~~l~~iD~~Sr~~-~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~i~sDnG~~ 71 (164)
T 1c6v_A 10 GTWQMDCTHLEG----K-IVIVAVHVASGFI-EAE-VIPQETGRQTALFLLKLAGRW---PITHLHTDNGAN 71 (164)
T ss_dssp TEEEEEEEEETT----E-EEEEEECTTSCCE-EEE-ECSSCSHHHHHHHHHHHHTTS---CCCEEECCCCSS
T ss_pred CEEEEeecccCC----E-EEEEEEEccCCEE-EEE-EcCCCchHHHHHHHHHHHHhc---CCCEEEeCCchh
Confidence 567888888722 2 3455588887755 444 445566666554444433333 379999998654
Done!