BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043649
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 246 bits (629), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 126/263 (47%), Positives = 183/263 (69%), Gaps = 15/263 (5%)
Query: 1 MALQDSEVPSSILNATAGN--RPTASYHPTLWGEKFLDYSSVDDSVAMDATID---QDEF 55
MA Q S++PSS ++ + RP A + P++WG+ FL+ D ID +
Sbjct: 1 MASQVSQMPSSSPLSSNKDEMRPKADFQPSIWGDLFLN--------CPDKNIDAETEKRH 52
Query: 56 EALKQKIKNMLISPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSPDEYDG-NDVH 114
+ LK++++ M+++P S QKL+ ID+VQRLGV+YHF +EIEDELE + + D ND++
Sbjct: 53 QQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLY 112
Query: 115 SVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILD 174
+ ++RFRLLR+ GY +SCD+F FKD++G FK S+ +DV G+L LY+A++LR+ GEDILD
Sbjct: 113 TTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILD 172
Query: 175 EALAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAVYYIDLYSRDDSKDKAIL 234
EA++FTT HL V + LS+E+ HAL + IRRGLPR+EA +Y+ +Y +S +KA L
Sbjct: 173 EAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKA-L 231
Query: 235 LKFAKLDFCMLQVIHRKELSIIT 257
L+FAK+DF MLQ +HRKELS I
Sbjct: 232 LEFAKIDFNMLQFLHRKELSEIC 254
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 220 bits (561), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 108/239 (45%), Positives = 171/239 (71%), Gaps = 6/239 (2%)
Query: 20 RPTASYHPTLWGEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSL 79
RP A + P+LWG++FL +S +D+ VA E EALK++ +NML++ K L+L
Sbjct: 15 RPVADFSPSLWGDQFLSFS-IDNQVAEKYA---KEIEALKEQTRNMLLATGMKLADTLNL 70
Query: 80 IDAVQRLGVAYHFEREIEDELEKLSPDEYDGNDVHSVALRFRLLRQQGYRISCDIFGGFK 139
ID ++RLG++YHFE+EI+D L+++ + ND+ + AL+FRLLRQ G+ IS +IF F+
Sbjct: 71 IDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQ 130
Query: 140 DDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVTQVSPQLSDEI 199
D+ GKFK SL +DV G+LNLYEA+H+R +DIL++ALAF+T HLES + L +++
Sbjct: 131 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQV 190
Query: 200 LHALNRPIRRGLPRLEAVYYI-DLYSRDDSKDKAILLKFAKLDFCMLQVIHRKELSIIT 257
HAL + + +G+PR+E ++I +Y ++ SK+ +LL+FAKLDF +LQ++H++EL+ ++
Sbjct: 191 THALEQCLHKGVPRVETRFFISSIYDKEQSKNN-VLLRFAKLDFNLLQMLHKQELAQVS 248
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 220 bits (561), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 108/239 (45%), Positives = 171/239 (71%), Gaps = 6/239 (2%)
Query: 20 RPTASYHPTLWGEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSL 79
RP A + P+LWG++FL +S +D+ VA E EALK++ +NML++ K L+L
Sbjct: 15 RPVADFSPSLWGDQFLSFS-IDNQVAEKYA---KEIEALKEQTRNMLLATGMKLADTLNL 70
Query: 80 IDAVQRLGVAYHFEREIEDELEKLSPDEYDGNDVHSVALRFRLLRQQGYRISCDIFGGFK 139
ID ++RLG++YHFE+EI+D L+++ + ND+ + AL+FRLLRQ G+ IS +IF F+
Sbjct: 71 IDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQ 130
Query: 140 DDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVTQVSPQLSDEI 199
D+ GKFK SL +DV G+LNLYEA+H+R +DIL++ALAF+T HLES + L +++
Sbjct: 131 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQV 190
Query: 200 LHALNRPIRRGLPRLEAVYYI-DLYSRDDSKDKAILLKFAKLDFCMLQVIHRKELSIIT 257
HAL + + +G+PR+E ++I +Y ++ SK+ +LL+FAKLDF +LQ++H++EL+ ++
Sbjct: 191 THALEQCLHKGVPRVETRFFISSIYDKEQSKNN-VLLRFAKLDFNLLQMLHKQELAQVS 248
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 220 bits (561), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 108/239 (45%), Positives = 171/239 (71%), Gaps = 6/239 (2%)
Query: 20 RPTASYHPTLWGEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSL 79
RP A + P+LWG++FL +S +D+ VA E EALK++ +NML++ K L+L
Sbjct: 15 RPVADFSPSLWGDQFLSFS-IDNQVAEKYA---KEIEALKEQTRNMLLATGMKLADTLNL 70
Query: 80 IDAVQRLGVAYHFEREIEDELEKLSPDEYDGNDVHSVALRFRLLRQQGYRISCDIFGGFK 139
ID ++RLG++YHFE+EI+D L+++ + ND+ + AL+FRLLRQ G+ IS +IF F+
Sbjct: 71 IDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQ 130
Query: 140 DDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVTQVSPQLSDEI 199
D+ GKFK SL +DV G+LNLYEA+H+R +DIL++ALAF+T HLES + L +++
Sbjct: 131 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQV 190
Query: 200 LHALNRPIRRGLPRLEAVYYI-DLYSRDDSKDKAILLKFAKLDFCMLQVIHRKELSIIT 257
HAL + + +G+PR+E ++I +Y ++ SK+ +LL+FAKLDF +LQ++H++EL+ ++
Sbjct: 191 THALEQCLHKGVPRVETRFFISSIYDKEQSKNN-VLLRFAKLDFNLLQMLHKQELAQVS 248
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 220 bits (561), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 108/239 (45%), Positives = 171/239 (71%), Gaps = 6/239 (2%)
Query: 20 RPTASYHPTLWGEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSL 79
RP A + P+LWG++FL +S +D+ VA E EALK++ +NML++ K L+L
Sbjct: 15 RPVADFSPSLWGDQFLSFS-IDNQVAEKYA---KEIEALKEQTRNMLLATGMKLADTLNL 70
Query: 80 IDAVQRLGVAYHFEREIEDELEKLSPDEYDGNDVHSVALRFRLLRQQGYRISCDIFGGFK 139
ID ++RLG++YHFE+EI+D L+++ + ND+ + AL+FRLLRQ G+ IS +IF F+
Sbjct: 71 IDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQ 130
Query: 140 DDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVTQVSPQLSDEI 199
D+ GKFK SL +DV G+LNLYEA+H+R +DIL++ALAF+T HLES + L +++
Sbjct: 131 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQV 190
Query: 200 LHALNRPIRRGLPRLEAVYYI-DLYSRDDSKDKAILLKFAKLDFCMLQVIHRKELSIIT 257
HAL + + +G+PR+E ++I +Y ++ SK+ +LL+FAKLDF +LQ++H++EL+ ++
Sbjct: 191 THALEQCLHKGVPRVETRFFISSIYDKEQSKNN-VLLRFAKLDFNLLQMLHKQELAQVS 248
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 218 bits (555), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 170/239 (71%), Gaps = 6/239 (2%)
Query: 20 RPTASYHPTLWGEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSL 79
RP A + P+LWG++FL +S + + VA E EALK++ +NML++ K L+L
Sbjct: 17 RPVADFSPSLWGDQFLSFS-IKNQVAEKYA---KEIEALKEQTRNMLLATGMKLADTLNL 72
Query: 80 IDAVQRLGVAYHFEREIEDELEKLSPDEYDGNDVHSVALRFRLLRQQGYRISCDIFGGFK 139
ID ++RLG++YHFE+EI+D L+++ + ND+ + AL+FRLLRQ G+ IS +IF F+
Sbjct: 73 IDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQ 132
Query: 140 DDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVTQVSPQLSDEI 199
D+ GKFK SL +DV G+LNLYEA+H+R +DIL++ALAF+T HLES + L +++
Sbjct: 133 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQV 192
Query: 200 LHALNRPIRRGLPRLEAVYYI-DLYSRDDSKDKAILLKFAKLDFCMLQVIHRKELSIIT 257
HAL + + +G+PR+E ++I +Y ++ SK+ +LL+FAKLDF +LQ++H++EL+ ++
Sbjct: 193 THALEQCLHKGVPRVETRFFISSIYDKEQSKNN-VLLRFAKLDFNLLQMLHKQELAQVS 250
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 218 bits (555), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 170/239 (71%), Gaps = 6/239 (2%)
Query: 20 RPTASYHPTLWGEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSL 79
RP A + P+LWG++FL +S + + VA E EALK++ +NML++ K L+L
Sbjct: 17 RPVADFSPSLWGDQFLSFS-IKNQVAEKYA---KEIEALKEQTRNMLLATGMKLADTLNL 72
Query: 80 IDAVQRLGVAYHFEREIEDELEKLSPDEYDGNDVHSVALRFRLLRQQGYRISCDIFGGFK 139
ID ++RLG++YHFE+EI+D L+++ + ND+ + AL+FRLLRQ G+ IS +IF F+
Sbjct: 73 IDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQ 132
Query: 140 DDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVTQVSPQLSDEI 199
D+ GKFK SL +DV G+LNLYEA+H+R +DIL++ALAF+T HLES + L +++
Sbjct: 133 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQV 192
Query: 200 LHALNRPIRRGLPRLEAVYYI-DLYSRDDSKDKAILLKFAKLDFCMLQVIHRKELSIIT 257
HAL + + +G+PR+E ++I +Y ++ SK+ +LL+FAKLDF +LQ++H++EL+ ++
Sbjct: 193 THALEQCLHKGVPRVETRFFISSIYDKEQSKNN-VLLRFAKLDFNLLQMLHKQELAQVS 250
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 218 bits (554), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 170/239 (71%), Gaps = 6/239 (2%)
Query: 20 RPTASYHPTLWGEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSL 79
RP A + P+LWG++FL +S + + VA E EALK++ +NML++ K L+L
Sbjct: 2 RPVADFSPSLWGDQFLSFS-IKNQVAEKYA---KEIEALKEQTRNMLLATGMKLADTLNL 57
Query: 80 IDAVQRLGVAYHFEREIEDELEKLSPDEYDGNDVHSVALRFRLLRQQGYRISCDIFGGFK 139
ID ++RLG++YHFE+EI+D L+++ + ND+ + AL+FRLLRQ G+ IS +IF F+
Sbjct: 58 IDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQ 117
Query: 140 DDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVTQVSPQLSDEI 199
D+ GKFK SL +DV G+LNLYEA+H+R +DIL++ALAF+T HLES + L +++
Sbjct: 118 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQV 177
Query: 200 LHALNRPIRRGLPRLEAVYYI-DLYSRDDSKDKAILLKFAKLDFCMLQVIHRKELSIIT 257
HAL + + +G+PR+E ++I +Y ++ SK+ +LL+FAKLDF +LQ++H++EL+ ++
Sbjct: 178 THALEQCLHKGVPRVETRFFISSIYDKEQSKNN-VLLRFAKLDFNLLQMLHKQELAQVS 235
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 217 bits (552), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 171/239 (71%), Gaps = 6/239 (2%)
Query: 20 RPTASYHPTLWGEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSL 79
RP A + P+LWG++FL +S +D+ VA E EALK++ ++ML++ K L+L
Sbjct: 15 RPVADFSPSLWGDQFLSFS-IDNQVAEKYA---QEIEALKEQTRSMLLATGRKLADTLNL 70
Query: 80 IDAVQRLGVAYHFEREIEDELEKLSPDEYDGNDVHSVALRFRLLRQQGYRISCDIFGGFK 139
ID ++RLG++YHFE+EI++ L+++ + ND+ + AL+FRLLRQ G+ IS +IF F+
Sbjct: 71 IDIIERLGISYHFEKEIDEILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQ 130
Query: 140 DDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVTQVSPQLSDEI 199
D+ GKFK SL +DV G+LNLYEA+H+R +DIL++ALAF+T HLES + L +++
Sbjct: 131 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQV 190
Query: 200 LHALNRPIRRGLPRLEAVYYI-DLYSRDDSKDKAILLKFAKLDFCMLQVIHRKELSIIT 257
HAL + + +G+PR+E ++I +Y ++ SK+ +LL+FAKLDF +LQ++H++EL+ ++
Sbjct: 191 THALEQCLHKGVPRVETRFFISSIYDKEQSKNN-VLLRFAKLDFNLLQMLHKQELAQVS 248
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 217 bits (552), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 171/239 (71%), Gaps = 6/239 (2%)
Query: 20 RPTASYHPTLWGEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSL 79
RP A + P+LWG++FL +S +D+ VA E EALK++ ++ML++ K L+L
Sbjct: 15 RPVADFSPSLWGDQFLSFS-IDNQVAEKYA---QEIEALKEQTRSMLLATGRKLADTLNL 70
Query: 80 IDAVQRLGVAYHFEREIEDELEKLSPDEYDGNDVHSVALRFRLLRQQGYRISCDIFGGFK 139
ID ++RLG++YHFE+EI++ L+++ + ND+ + AL+FRLLRQ G+ IS +IF F+
Sbjct: 71 IDIIERLGISYHFEKEIDEILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQ 130
Query: 140 DDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVTQVSPQLSDEI 199
D+ GKFK SL +DV G+LNLYEA+H+R +DIL++ALAF+T HLES + L +++
Sbjct: 131 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQV 190
Query: 200 LHALNRPIRRGLPRLEAVYYI-DLYSRDDSKDKAILLKFAKLDFCMLQVIHRKELSIIT 257
HAL + + +G+PR+E ++I +Y ++ SK+ +LL+FAKLDF +LQ++H++EL+ ++
Sbjct: 191 THALEQCLHKGVPRVETRFFISSIYDKEQSKNN-VLLRFAKLDFNLLQMLHKQELAQVS 248
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 143/239 (59%), Gaps = 10/239 (4%)
Query: 20 RPTASYHPTLWGEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSL 79
R +A Y P W FL S D+S+ + +D+ + L+ +++ + + + L L
Sbjct: 15 RRSADYEPNSWDYDFLLSSDTDESI----EVYKDKAKKLEAEVRREINNEKAEFLTLLEL 70
Query: 80 IDAVQRLGVAYHFEREIEDELEK-LSPDEYDG---NDVHSVALRFRLLRQQGYRISCDIF 135
ID VQRLG+ Y FE +I L++ +S +DG +H+ AL FRLLRQ G+ +S + F
Sbjct: 71 IDNVQRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQEAF 130
Query: 136 GGFKDDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVTQ-VSPQ 194
GFKD G F +L D +L+LYEA+ L + GE+ILDEA F SHL+ + + + +
Sbjct: 131 SGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEEKIGKE 190
Query: 195 LSDEILHALNRPIRRGLPRLEAVYYIDLYSRDDSKDKAILLKFAKLDFCMLQVIHRKEL 253
L++++ HAL P+ R RLEAV+ I+ Y + + ++ +LL+ A LD+ M+Q +++++L
Sbjct: 191 LAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQ-VLLELAILDYNMIQSVYQRDL 248
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 129/240 (53%), Gaps = 18/240 (7%)
Query: 22 TASYHPTLWGEKFLDYSSVDDSVAMDATIDQDEF----EALKQKIKNMLISPTDKSFQKL 77
T Y PTLW D+S++ + D+ +++ + ++K ML D S ++L
Sbjct: 37 TGGYQPTLW-----DFSTIQ---SFDSEYKEEKHLMRAAGMIDQVKMMLQEEVD-SIRRL 87
Query: 78 SLIDAVQRLGVAYHFEREIEDELEK--LSPDEYDGNDVHSVALRFRLLRQQGYRISCDIF 135
LID ++RLG++ HFEREI + L + +E D D++S ALRFRLLRQ + +S ++F
Sbjct: 88 ELIDDLRRLGISCHFEREIVEILNSKYYTNNEIDERDLYSTALRFRLLRQYDFSVSQEVF 147
Query: 136 GGFKDDRGK-FKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMV-TQVSP 193
FK+ +G FK SL++D G+L LYEA+ L +GE+ L A F T L+ V
Sbjct: 148 DCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDKDI 207
Query: 194 QLSDEILHALNRPIRRGLPRLEAVYYIDLYSRDDSKDKAILLKFAKLDFCMLQVIHRKEL 253
L I AL P + A +ID Y R + + L+ AKLDF M+Q ++EL
Sbjct: 208 NLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTV-LELAKLDFNMVQAQFQQEL 266
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 114 bits (284), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 135/246 (54%), Gaps = 18/246 (7%)
Query: 20 RPTASYHPTLWGEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSL 79
R + +Y P LW ++ S++ + +D+ ++ +I L+ + Q+L L
Sbjct: 6 RRSGNYQPALWDSNYI--QSLNTPYTEERHLDRKAELIVQVRI---LLKEKMEPVQQLEL 60
Query: 80 IDAVQRLGVAYHFEREIE-------DELEKLSPDEYDGNDVHSVALRFRLLRQQGYRISC 132
I ++ LG++ F+ EI+ +E + +E + D++ AL FRLLRQ G+ IS
Sbjct: 61 IHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQ 120
Query: 133 DIFGGFKDDRG-KFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVTQV 191
D+F FK+++G FK SL D GML LYEA+ L +GED L+ A F T L+ + +
Sbjct: 121 DVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEG 180
Query: 192 SPQLSDEIL----HALNRPIRRGLPRLEAVYYIDLYSRDDSKDKAILLKFAKLDFCMLQV 247
++ + +L H+L+ P+ + +EA ++ID Y+R + ++ + AKL+F ++Q
Sbjct: 181 GNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMN-PLIFELAKLNFNIIQA 239
Query: 248 IHRKEL 253
H++EL
Sbjct: 240 THQQEL 245
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 108/220 (49%), Gaps = 40/220 (18%)
Query: 74 FQKLSLIDAVQRLGVAYHFEREIEDELE--------------KLSPDEYDGNDVHSVALR 119
++L ++D + RLG+ HFE+EI++ L+ +L+P D+ + AL
Sbjct: 299 LERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIA----DLETTALG 354
Query: 120 FRLLRQQGYRISCDIFGGFKDDRGKFKVS---LINDVTGMLNLYEAAHLRIRGEDILDEA 176
FRLLR Y +S IF FKD GKF S DV MLNLY A+ L GE+ILDEA
Sbjct: 355 FRLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEA 414
Query: 177 LAFTTSHLE--------SMVTQVSPQLSDEILHALNRPIRRGLPRLEAVYYIDLYSRDDS 228
+F T +L S LS EI +AL +PR+EA Y +Y D +
Sbjct: 415 KSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYA 474
Query: 229 K-----------DKAILLKFAKLDFCMLQVIHRKELSIIT 257
+ + L+ KLDF ++Q IH++E+ +T
Sbjct: 475 RIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVT 514
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 129/244 (52%), Gaps = 16/244 (6%)
Query: 20 RPTASYHPTLWGEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSL 79
R + +Y+P+ W F+ S + D I E L +K L TD+ ++L L
Sbjct: 2 RRSGNYNPSRWDVNFIQ-SLLSDYKEDKHVIRASELVTL---VKMELEKETDQ-IRQLEL 56
Query: 80 IDAVQRLGVAYHFEREIEDELEKLSPDEY--------DGNDVHSVALRFRLLRQQGYRIS 131
ID +QR+G++ HF+ E ++ L + D + + D++S +L FRLLR+ G++++
Sbjct: 57 IDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVA 116
Query: 132 CDIFGGFKDDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVTQ- 190
++F FK++ G+FK SL +D G+L LYEA+ L GE L+ A F T LE V +
Sbjct: 117 QEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEG 176
Query: 191 -VSPQLSDEILHALNRPIRRGLPRLEAVYYIDLYSRDDSKDKAILLKFAKLDFCMLQVIH 249
V L I ++L+ P+ + R A +I+ Y R ++L+ A LD ++Q
Sbjct: 177 GVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWY-RKRPDMNPVVLELAILDLNIVQAQF 235
Query: 250 RKEL 253
++EL
Sbjct: 236 QEEL 239
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 104/214 (48%), Gaps = 36/214 (16%)
Query: 74 FQKLSLIDAVQRLGVAYHFEREIEDELEKLSPD----------EYDGNDVHSVALRFRLL 123
F++L +D V+RLG+ HF+ EI++ L+ + E D+ A+ R+L
Sbjct: 271 FERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRIL 330
Query: 124 RQQGYRISCDIFGGFKDDRGKFKVSLIN---DVTGMLNLYEAAHLRIRGEDILDEALAFT 180
R GY +S D+ F+D+ G+F L VT MLN+ +H+ GE I++EA T
Sbjct: 331 RLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCT 390
Query: 181 TSHLESMVTQV--------SPQLSDEILHALNRPIRRGLPRLEAVYYIDLYSRDD----- 227
+L + + V + E+ +AL P + +PRLEA YI+ Y DD
Sbjct: 391 ERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGK 450
Query: 228 --------SKDKAILLKFAKLDFCMLQVIHRKEL 253
S +K L+ AKLDF +Q IH+ EL
Sbjct: 451 TVYMMPYISNEK--YLELAKLDFNKVQSIHQTEL 482
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 110/210 (52%), Gaps = 27/210 (12%)
Query: 75 QKLSLIDAVQRLGVAYHFEREIEDELEKLSPDEYDGN----------DVHSVALRFRLLR 124
++LSL+D ++ LG+ HF++EI+ L+ + + D+++ AL R LR
Sbjct: 248 ERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLR 307
Query: 125 QQGYRISCDIFGGFKDDRGKFKVSLIN---DVTGMLNLYEAAHLRIRGEDILDEALAFTT 181
GY +S D+ FKD+ G+F S ++ ++NL+ A+ L E +D+A F
Sbjct: 308 MHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAE 367
Query: 182 SHL-ESMVTQVS--PQLSDEILHALNRPIRRGLPRLEAVYYIDLYS-----------RDD 227
+L E++ T++S +L EI + + P +PRLEA YID Y R
Sbjct: 368 PYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMP 427
Query: 228 SKDKAILLKFAKLDFCMLQVIHRKELSIIT 257
S + L+ AKLDF ++Q +H++EL ++T
Sbjct: 428 SLSNSKCLELAKLDFNIVQSLHQEELKLLT 457
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 134/297 (45%), Gaps = 56/297 (18%)
Query: 7 EVPSSILNATAGNRPTASYHPTLWGEKFLDYSSVDDSV---------AMDATIDQDEFEA 57
++P+++L++ G R W EK L S D S A T D + E
Sbjct: 173 KIPTTLLHSLEGMRDLD------W-EKLLKLQSQDGSFLFSPSSTAFAFMQTRDSNCLEY 225
Query: 58 LKQKIKNML-----ISPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSPDEYDGN- 111
L+ +K + P D F+ + ++D +QRLG++ +FE EI++ L+ + D
Sbjct: 226 LRNAVKRFNGGVPNVFPVD-LFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGI 284
Query: 112 ---------DVHSVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLIND---VTGMLNL 159
D+ A+ FRLLRQ GY++S D+F F+ + G+F + VTGM NL
Sbjct: 285 CWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFKNFEKE-GEFFCFVGQSNQAVTGMFNL 343
Query: 160 YEAAHLRIRGEDILDEALAFTTSHL------ESMVTQ--VSPQLSDEILHALNRPIRRGL 211
Y A+ L E+IL A F+ ++L E ++ + + L EI AL P L
Sbjct: 344 YRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASL 403
Query: 212 PRLEAVYYIDLYSRDDS------------KDKAILLKFAKLDFCMLQVIHRKELSII 256
PR+E +YID Y ++ + L+ AK D+ Q H+ E I
Sbjct: 404 PRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIF 460
>pdb|1VBG|A Chain A, Pyruvate Phosphate Dikinase From Maize
pdb|1VBH|A Chain A, Pyruvate Phosphate Dikinase With Bound Mg-Pep From Maize
Length = 876
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 123 LRQQGYRISCDIFGGFKDDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTS 182
LR + C +FG + G + N TG LY + +GED++ A T
Sbjct: 235 LRGTAVNVQCMVFGNMGNTSGTGVLFTRNPNTGEKKLYGEFLVNAQGEDVV--AGIRTPE 292
Query: 183 HLESMVTQVSPQLSDEILHALN 204
L++M + PQ DE++ N
Sbjct: 293 DLDAM-KNLMPQAYDELVENCN 313
>pdb|1K8I|A Chain A, Crystal Structure Of Mouse H2-Dm
Length = 191
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 176 ALAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLE 215
A+AF S E ++ +VSP+L +I P+ RGLP E
Sbjct: 68 AIAFDKSFCEMLMREVSPKLEGQI------PVSRGLPVAE 101
>pdb|1C5K|A Chain A, The Structure Of Tolb, An Essential Component Of The Tol-
Dependent Translocation System And Its Interactions With
The Translocation Domain Of Colicin E9
pdb|2IVZ|A Chain A, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|B Chain B, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|C Chain C, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|D Chain D, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
Length = 439
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 31 GEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGVAY 90
G + Y VD A + Q+ ++ KQ ++ + +D+ F+KL+ I R +AY
Sbjct: 111 GSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAY 170
Query: 91 HFEREIEDELEKLSPDEYDG 110
+ +L +YDG
Sbjct: 171 VVQTNGGQFPYELRVSDYDG 190
>pdb|3IAX|A Chain A, The Crystal Structure Of The Tolb Box Of Colicin A In
Complex With Tolb Reveals Important Differences In The
Recruitment Of The Common Tolb Translocation Portal Used
By Group A Colicins
Length = 438
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 31 GEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGVAY 90
G + Y VD A + Q+ ++ KQ ++ + +D+ F+KL+ I R +AY
Sbjct: 110 GSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAY 169
Query: 91 HFEREIEDELEKLSPDEYDG 110
+ +L +YDG
Sbjct: 170 VVQTNGGQFPYELRVSDYDG 189
>pdb|2HQS|A Chain A, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|B Chain B, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|D Chain D, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|F Chain F, Crystal Structure Of TolbPAL COMPLEX
Length = 415
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 31 GEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGVAY 90
G + Y VD A + Q+ ++ KQ ++ + +D+ F+KL+ I R +AY
Sbjct: 89 GSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAY 148
Query: 91 HFEREIEDELEKLSPDEYDG 110
+ +L +YDG
Sbjct: 149 VVQTNGGQFPYELRVSDYDG 168
>pdb|2W8B|B Chain B, Crystal Structure Of Processed Tolb In Complex With Pal
pdb|2W8B|D Chain D, Crystal Structure Of Processed Tolb In Complex With Pal
pdb|2W8B|F Chain F, Crystal Structure Of Processed Tolb In Complex With Pal
Length = 409
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 31 GEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGVAY 90
G + Y VD A + Q+ ++ KQ ++ + +D+ F+KL+ I R +AY
Sbjct: 89 GSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAY 148
Query: 91 HFEREIEDELEKLSPDEYDG 110
+ +L +YDG
Sbjct: 149 VVQTNGGQFPYELRVSDYDG 168
>pdb|2W8B|A Chain A, Crystal Structure Of Processed Tolb In Complex With Pal
Length = 409
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 31 GEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGVAY 90
G + Y VD A + Q+ ++ KQ ++ + +D+ F+KL+ I R +AY
Sbjct: 89 GSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAY 148
Query: 91 HFEREIEDELEKLSPDEYDG 110
+ +L +YDG
Sbjct: 149 VVQTNGGQFPYELRVSDYDG 168
>pdb|1CRZ|A Chain A, Crystal Structure Of The E. Coli Tolb Protein
Length = 403
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 31 GEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGVAY 90
G + Y VD A + Q+ ++ KQ ++ + +D+ F+KL+ I R +AY
Sbjct: 83 GSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAY 142
Query: 91 HFEREIEDELEKLSPDEYDG 110
+ +L +YDG
Sbjct: 143 VVQTNGGQFPYELRVSDYDG 162
>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana
pdb|1R9J|B Chain B, Transketolase From Leishmania Mexicana
Length = 673
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 106 DEYDGNDVHSVALRFRLLRQQGYRISCDIFGGFKDD 141
D + ++ H AL++ LL GY ++ D GF+ D
Sbjct: 60 DRFVMSNGHGCALQYALLHMAGYNLTMDDLKGFRQD 95
>pdb|1RWU|A Chain A, Solution Structure Of Conserved Protein Ybed From E. Coli
Length = 109
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 155 GMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVTQVSPQLSDEILHALNR 205
G NLY H++ + L+E L F T ++ Q P+L D+++ + R
Sbjct: 13 GRENLYFQGHMKTK----LNELLEFPTPFTYKVMGQALPELVDQVVEVVQR 59
>pdb|2CGJ|A Chain A, Crystal Structure Of L-Rhamnulose Kinase From Escherichia
Coli In Complex With L-Fructose And Adp.
pdb|2CGK|A Chain A, Crystal Structure Of L-Rhamnulose Kinase From Escherichia
Coli In An Open Uncomplexed Conformation.
pdb|2CGK|B Chain B, Crystal Structure Of L-Rhamnulose Kinase From Escherichia
Coli In An Open Uncomplexed Conformation.
pdb|2UYT|A Chain A, Structure Of L-Rhamnulose Kinase In Complex With Adp And
Beta-L-Rhamnulose
Length = 489
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 109 DGNDVHSVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDVTGMLNLYEAAHLRIR 168
D + + + F LL QQG R+ + ++D R ++ G ++Y+ + ++
Sbjct: 75 DSIGIDTWGVDFVLLDQQGQRVGLPV--AYRDSRTNGLMAQAQQQLGKRDIYQRSGIQF- 131
Query: 169 GEDILDEALAFTTSHLESMVTQVSPQLSDEILHALNRP 206
L F T + +T+ P+L I HAL P
Sbjct: 132 --------LPFNTLYQLRALTEQQPELIPHIAHALLMP 161
>pdb|2PLI|A Chain A, Crystal Structure Of Putative Mg2+ And Co2+
Transporter(Corc) Associated Region From Neisseria
Meningitidis Mc58
pdb|2PLI|B Chain B, Crystal Structure Of Putative Mg2+ And Co2+
Transporter(Corc) Associated Region From Neisseria
Meningitidis Mc58
pdb|2PLI|C Chain C, Crystal Structure Of Putative Mg2+ And Co2+
Transporter(Corc) Associated Region From Neisseria
Meningitidis Mc58
pdb|2PLI|D Chain D, Crystal Structure Of Putative Mg2+ And Co2+
Transporter(Corc) Associated Region From Neisseria
Meningitidis Mc58
Length = 91
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 152 DVTGMLNLYEAAHLRIRGEDILDEALAFTTS 182
D G L + E HL +RGE +L L FT +
Sbjct: 45 DTIGGLVIQELGHLPVRGEKVLIGGLQFTVA 75
>pdb|2CGL|A Chain A, Crystal Structure Of L-Rhamnulose Kinase From Escherichia
Coli In Complex With L-Fructose, Adp And A Modeled Atp
Gamma Phosphate
Length = 489
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 109 DGNDVHSVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDVTGMLNLYEAAHLRIR 168
D + + + F LL QQG R+ + ++D R + G ++Y+ + ++
Sbjct: 75 DSIGIDTWGVDFVLLDQQGQRVGLPV--AYRDSRTNGLXAQAQQQLGKRDIYQRSGIQF- 131
Query: 169 GEDILDEALAFTTSHLESMVTQVSPQLSDEILHALNRP 206
L F T + +T+ P+L I HAL P
Sbjct: 132 --------LPFNTLYQLRALTEQQPELIPHIAHALLXP 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,302,940
Number of Sequences: 62578
Number of extensions: 301366
Number of successful extensions: 831
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 770
Number of HSP's gapped (non-prelim): 38
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)