Query 043649
Match_columns 258
No_of_seqs 146 out of 736
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 07:00:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 9.9E-81 2.1E-85 613.5 19.9 234 20-258 1-245 (542)
2 PF01397 Terpene_synth: Terpen 100.0 2.1E-61 4.6E-66 419.1 12.5 174 30-203 1-183 (183)
3 PLN02279 ent-kaur-16-ene synth 100.0 1.2E-60 2.7E-65 486.2 18.4 204 52-258 245-479 (784)
4 PLN02592 ent-copalyl diphospha 100.0 1E-59 2.3E-64 478.9 16.9 205 52-258 285-527 (800)
5 COG3063 PilF Tfp pilus assembl 44.5 1.8E+02 0.0039 27.0 8.9 141 58-232 54-208 (250)
6 KOG3951 Uncharacterized conser 36.8 53 0.0011 30.9 4.3 57 140-204 264-320 (321)
7 PF11848 DUF3368: Domain of un 32.6 15 0.00032 25.1 0.0 22 118-139 23-44 (48)
8 PF08373 RAP: RAP domain; Int 24.7 56 0.0012 22.3 1.8 27 113-139 17-43 (58)
9 PF14164 YqzH: YqzH-like prote 23.4 36 0.00078 25.2 0.7 20 119-138 10-29 (64)
10 PF11000 DUF2840: Protein of u 18.6 60 0.0013 27.8 1.1 15 76-90 97-111 (149)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=9.9e-81 Score=613.55 Aligned_cols=234 Identities=48% Similarity=0.822 Sum_probs=218.9
Q ss_pred CCCCCCCCCCCcc-cccccCCccchhccchhhHHHHHHHHHHHHHHHhcCC--CccccccchhHHHHHHhCcccccHHHH
Q 043649 20 RPTASYHPTLWGE-KFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISP--TDKSFQKLSLIDAVQRLGVAYHFEREI 96 (258)
Q Consensus 20 R~~a~y~psiW~d-~fl~~~~~~~~~~~~~~~~~~~~~~Lk~eVr~~l~~~--~~d~~~~L~lID~lqRLGI~yhFe~EI 96 (258)
||++||+||+||| .|+++++++.. ...+.+++++||++||+|+... +.|++++|+|||+||||||+|||++||
T Consensus 1 r~~~~~~~~~w~~~~~~s~~~~~~~----~~~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI 76 (542)
T cd00684 1 RPSANFPPSLWGDDHFLSLSSDYSE----EDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEI 76 (542)
T ss_pred CCCCCCCCCcCCCcceeecCCCcch----hHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHH
Confidence 7899999999999 67777665542 2267899999999999999864 679999999999999999999999999
Q ss_pred HHHHHHhcCCCC-----CCCChhhHHHHHHHhhhcCeeeccccccceecCCCccccccchhhHHHHHHHHhhhcCCCCch
Q 043649 97 EDELEKLSPDEY-----DGNDVHSVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDVTGMLNLYEAAHLRIRGED 171 (258)
Q Consensus 97 ~~~L~~i~~~~~-----~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~G~Fk~~l~~Dv~glLsLYeAS~l~~~gE~ 171 (258)
+++|+++|+.+. ...|||+|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||+++||+
T Consensus 77 ~~~L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~ 156 (542)
T cd00684 77 KEILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGED 156 (542)
T ss_pred HHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcH
Confidence 999999998752 247999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhc---cCCChHHHHHHhcCCccccCchhhHHhhhhhhcccCCCCChHHHHHHHHhhhhHHHHH
Q 043649 172 ILDEALAFTTSHLESMVTQ---VSPQLSDEILHALNRPIRRGLPRLEAVYYIDLYSRDDSKDKAILLKFAKLDFCMLQVI 248 (258)
Q Consensus 172 iLdeA~~Fs~~~L~~~~~~---~~~~l~~~V~~aL~~P~h~~l~RleaR~yI~~Y~~~~~~n~~~LLelAklDFn~~Qs~ 248 (258)
|||+|+.||++||++.+++ ++++|+++|.+||++||||++||+|||+||+.|++++++|++ ||||||+|||+||++
T Consensus 157 iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~-lLelAkldfn~~Q~~ 235 (542)
T cd00684 157 ILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNET-LLELAKLDFNILQAL 235 (542)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHH-HHHHHHHHHHHHhHh
Confidence 9999999999999999986 788999999999999999999999999999999999999999 999999999999999
Q ss_pred hHHHHHHHhC
Q 043649 249 HRKELSIITE 258 (258)
Q Consensus 249 hq~EL~~isr 258 (258)
||+||++++|
T Consensus 236 hq~El~~~~r 245 (542)
T cd00684 236 HQEELKILSR 245 (542)
T ss_pred HHHHHHHHhH
Confidence 9999999975
No 2
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=2.1e-61 Score=419.07 Aligned_cols=174 Identities=48% Similarity=0.794 Sum_probs=147.0
Q ss_pred Ccccccc-cCCccchh-ccchhhHHHHHHHHHHHHHHHhcCCCccccccchhHHHHHHhCcccccHHHHHHHHHHhcCCC
Q 043649 30 WGEKFLD-YSSVDDSV-AMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSPDE 107 (258)
Q Consensus 30 W~d~fl~-~~~~~~~~-~~~~~~~~~~~~~Lk~eVr~~l~~~~~d~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i~~~~ 107 (258)
|||+|++ .+|.+... ....+.+.+++++||++||.|+.....|++++|+|||+||||||+|||++||+++|+++|+.+
T Consensus 1 W~d~fl~s~s~~~~~~~~~~~~~~~~~~~~Lk~~v~~~l~~~~~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~ 80 (183)
T PF01397_consen 1 WGDDFLQSLSPSYTACMQSEDEKCKERAEELKEEVRNMLPASYPDPLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSW 80 (183)
T ss_dssp TTHHHHHHTBHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTT
T ss_pred CCCceecCCCCcchhccchhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhc
Confidence 9999994 23322210 012467899999999999999987445899999999999999999999999999999999875
Q ss_pred C----CCCChhhHHHHHHHhhhcCeeeccccccceecCCCccccccchhhHHHHHHHHhhhcCCCCchHHHHHHHHHHHH
Q 043649 108 Y----DGNDVHSVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSH 183 (258)
Q Consensus 108 ~----~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~G~Fk~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Fs~~~ 183 (258)
. ...|||+|||+|||||||||+||||||++|+|++|+|+.++++||+|||+|||||||+++||+|||+|+.||++|
T Consensus 81 ~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~ 160 (183)
T PF01397_consen 81 DEDNEEIDDLYTTALRFRLLRQHGYYVSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHGEDILDEARAFTTKH 160 (183)
T ss_dssp TTTSHTSSCHHHHHHHHHHHHHTT----GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT-HHHHHHHHHHHHH
T ss_pred cccccccCchhHHHHHHHHHHHcCCcccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 3 235999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCC---ChHHHHHHhc
Q 043649 184 LESMVTQVSP---QLSDEILHAL 203 (258)
Q Consensus 184 L~~~~~~~~~---~l~~~V~~aL 203 (258)
|++++++..+ +|+++|+|||
T Consensus 161 L~~~~~~~~~~~~~L~~~V~~AL 183 (183)
T PF01397_consen 161 LKSLLSNLSIPDPHLAKEVKHAL 183 (183)
T ss_dssp HHHHHTTTCTTSCHHHHHHHHHH
T ss_pred HHHHhccCCCCcHHHHHHHHHhC
Confidence 9999986543 4999999997
No 3
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=1.2e-60 Score=486.23 Aligned_cols=204 Identities=29% Similarity=0.463 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHHHhcCC----CccccccchhHHHHHHhCcccccHHHHHHHHHHhcCCCC-----CCCChhhHHHHHHH
Q 043649 52 QDEFEALKQKIKNMLISP----TDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSPDEY-----DGNDVHSVALRFRL 122 (258)
Q Consensus 52 ~~~~~~Lk~eVr~~l~~~----~~d~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i~~~~~-----~~~dL~~~AL~FRL 122 (258)
.+-...|..-|++.-... |.++++++++||+||||||+|||++||+++|+.+|+.+. ...||++|||+|||
T Consensus 245 ~~~~~yL~~~~~~~~g~vP~~yp~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FRL 324 (784)
T PLN02279 245 AGCLRYLRSLLQKFGNAVPTVYPLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEEEIFLDLATCALAFRI 324 (784)
T ss_pred hHHHHHHHHHHHhcCCCCCCCCcccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHH
Confidence 345567777777754432 578999999999999999999999999999999998652 13699999999999
Q ss_pred hhhcCeeeccccccceecCCCcccccc---chhhHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHhhc-------cC
Q 043649 123 LRQQGYRISCDIFGGFKDDRGKFKVSL---INDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVTQ-------VS 192 (258)
Q Consensus 123 LRqhGy~VS~DvF~~F~d~~G~Fk~~l---~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~-------~~ 192 (258)
||||||+||||||++|+|++ |++++ .+||+|||+||||||+++|||+|||||+.||++||++.++. ++
T Consensus 325 LR~hGy~VS~dvf~~F~~~~--F~~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~ 402 (784)
T PLN02279 325 LRLNGYDVSSDPLKQFAEDH--FSDSLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLR 402 (784)
T ss_pred HHHcCCCCChhHHhhcCCCc--ccchhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhcccccccccC
Confidence 99999999999999999654 99988 59999999999999999999999999999999999998774 46
Q ss_pred CChHHHHHHhcCCccccCchhhHHhhhhhhcccCCC------------CChHHHHHHHHhhhhHHHHHhHHHHHHHhC
Q 043649 193 PQLSDEILHALNRPIRRGLPRLEAVYYIDLYSRDDS------------KDKAILLKFAKLDFCMLQVIHRKELSIITE 258 (258)
Q Consensus 193 ~~l~~~V~~aL~~P~h~~l~RleaR~yI~~Y~~~~~------------~n~~~LLelAklDFn~~Qs~hq~EL~~isr 258 (258)
++|+++|.|||++|||++|||+|||+||+.|++++. +|+. ||||||+|||+||++||+||++|+|
T Consensus 403 ~~L~~eV~~AL~~P~~~~l~RlEaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~-lLeLAklDFN~~Qs~hq~EL~~l~r 479 (784)
T PLN02279 403 KYIKKEVEDALNFPYYANLERLANRRSIENYAVDDTRILKTSYRCSNICNQD-FLKLAVEDFNFCQSIHREELKQLER 479 (784)
T ss_pred ccHHHHHHHHhcCchhcCccHHHHHHHHHHhccccchhccccccccccccHH-HHHHHHHHHHHHHHHHHHHHHHhCe
Confidence 789999999999999999999999999999998875 7999 9999999999999999999999986
No 4
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=1e-59 Score=478.94 Aligned_cols=205 Identities=30% Similarity=0.504 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHHHhcCC----CccccccchhHHHHHHhCcccccHHHHHHHHHHhcCCCC--------C--CCChhhHH
Q 043649 52 QDEFEALKQKIKNMLISP----TDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSPDEY--------D--GNDVHSVA 117 (258)
Q Consensus 52 ~~~~~~Lk~eVr~~l~~~----~~d~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i~~~~~--------~--~~dL~~~A 117 (258)
.+-.+.|...|++.-... |.+++++|+|||+||||||+|||++||+++|+.+|+.+. . ..|+++||
T Consensus 285 ~~cl~YL~~~~~k~~GgVP~vyP~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TA 364 (800)
T PLN02592 285 ENCLEYLNKAVQRFNGGVPNVYPVDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTA 364 (800)
T ss_pred hHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHH
Confidence 455677888887764332 578999999999999999999999999999999998421 1 26999999
Q ss_pred HHHHHhhhcCeeeccccccceecCCCcccccc---chhhHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHhh--c--
Q 043649 118 LRFRLLRQQGYRISCDIFGGFKDDRGKFKVSL---INDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVT--Q-- 190 (258)
Q Consensus 118 L~FRLLRqhGy~VS~DvF~~F~d~~G~Fk~~l---~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~--~-- 190 (258)
|+|||||||||+||||||++|++ +|+|++.+ .+|++|||+|||||||+++||+|||+|+.||+++|++.+. +
T Consensus 365 LaFRLLRqhGy~VS~DvF~~F~~-~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~ 443 (800)
T PLN02592 365 MGFRLLRLHGHQVSADVFKHFEK-GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREKQEANELL 443 (800)
T ss_pred HHHHHHHHcCCCCChHHHHhhcC-CCCccccccccccchHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999997 89998655 7999999999999999999999999999999999999753 1
Q ss_pred ----cCCChHHHHHHhcCCccccCchhhHHhhhhhhcccCCCC-------------ChHHHHHHHHhhhhHHHHHhHHHH
Q 043649 191 ----VSPQLSDEILHALNRPIRRGLPRLEAVYYIDLYSRDDSK-------------DKAILLKFAKLDFCMLQVIHRKEL 253 (258)
Q Consensus 191 ----~~~~l~~~V~~aL~~P~h~~l~RleaR~yI~~Y~~~~~~-------------n~~~LLelAklDFn~~Qs~hq~EL 253 (258)
++++|+++|.|||++||||+|||+||||||+.|++++++ |+. ||||||+|||+||++||+||
T Consensus 444 d~~~~~~~L~~eV~~AL~~P~~~~l~RlEaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~-lLeLAklDFn~~Qs~hq~EL 522 (800)
T PLN02592 444 DKWIIMKDLPGEVGFALEIPWYASLPRVETRFYIEQYGGEDDVWIGKTLYRMPYVNNNE-YLELAKLDYNNCQALHQLEW 522 (800)
T ss_pred cccccCccHHHHHHHhccChhhcCcchHHHHHHHHHhcCCcccchhhhhccccccCCHH-HHHHHHHHHHHHHHHhHHHH
Confidence 367899999999999999999999999999999987765 999 99999999999999999999
Q ss_pred HHHhC
Q 043649 254 SIITE 258 (258)
Q Consensus 254 ~~isr 258 (258)
++++|
T Consensus 523 ~~lsr 527 (800)
T PLN02592 523 DNFQK 527 (800)
T ss_pred HHHhH
Confidence 99986
No 5
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=44.53 E-value=1.8e+02 Score=26.97 Aligned_cols=141 Identities=17% Similarity=0.183 Sum_probs=89.6
Q ss_pred HHHHHHHHhcCCCccccccchhHHHHHHhCcccccHHHHHHHHHHhcCCCCCCCChhhHHHHHHHhhhcCeeeccccccc
Q 043649 58 LKQKIKNMLISPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSPDEYDGNDVHSVALRFRLLRQQGYRISCDIFGG 137 (258)
Q Consensus 58 Lk~eVr~~l~~~~~d~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DvF~~ 137 (258)
-|..+++.|...|......+.+--.-|++|.--+=.++-..+|.---+. -||.|+
T Consensus 54 A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~-------------------------GdVLNN 108 (250)
T COG3063 54 AKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN-------------------------GDVLNN 108 (250)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc-------------------------cchhhh
Confidence 3567777887667778888888888888887766666666665433221 167777
Q ss_pred eecCCCccccccchhhHHHHHHHHhhhcCCCCc--hHHHHHHHH---------HHHHHHHHhhcc---CCChHHHHHHhc
Q 043649 138 FKDDRGKFKVSLINDVTGMLNLYEAAHLRIRGE--DILDEALAF---------TTSHLESMVTQV---SPQLSDEILHAL 203 (258)
Q Consensus 138 F~d~~G~Fk~~l~~Dv~glLsLYeAS~l~~~gE--~iLdeA~~F---------s~~~L~~~~~~~---~~~l~~~V~~aL 203 (258)
| |.|-+....=..+|--+=+|..--.-|| +.++.+... ++.+|+..+... ++.+.+ +
T Consensus 109 Y----G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~-----~ 179 (250)
T COG3063 109 Y----GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLE-----L 179 (250)
T ss_pred h----hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHH-----H
Confidence 7 6777666666777777777877666666 344444332 234555555422 222222 2
Q ss_pred CCccccCchhhHHhhhhhhcccCCCCChH
Q 043649 204 NRPIRRGLPRLEAVYYIDLYSRDDSKDKA 232 (258)
Q Consensus 204 ~~P~h~~l~RleaR~yI~~Y~~~~~~n~~ 232 (258)
-.+....=.+..||.|++.|+....-+..
T Consensus 180 a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~ 208 (250)
T COG3063 180 ARLHYKAGDYAPARLYLERYQQRGGAQAE 208 (250)
T ss_pred HHHHHhcccchHHHHHHHHHHhcccccHH
Confidence 23344556778999999999887665544
No 6
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.83 E-value=53 Score=30.88 Aligned_cols=57 Identities=28% Similarity=0.368 Sum_probs=40.9
Q ss_pred cCCCccccccchhhHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcC
Q 043649 140 DDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVTQVSPQLSDEILHALN 204 (258)
Q Consensus 140 d~~G~Fk~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~l~~~V~~aL~ 204 (258)
+.+|-|...-.-|+||-..|-.+-- .... +-|=.|+.||++||. +.+-.+++++-|+
T Consensus 264 hp~GAFv~~s~iDmkgcvrllk~q~-p~~~-e~LLnaLRfTTKHlN------desTpK~ir~ll~ 320 (321)
T KOG3951|consen 264 HPNGAFVSNSSIDMKGCVRLLKLQP-PEQS-ECLLNALRFTTKHLN------DESTPKSIRHLLE 320 (321)
T ss_pred cccccccccCcCcHHHHHHHHHcCC-chhh-HHHHHHHHHHHhhcC------CCCChHHHHHHhc
Confidence 4678898888899999999987653 3333 346679999999996 3344566666553
No 7
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=32.60 E-value=15 Score=25.08 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=16.0
Q ss_pred HHHHHhhhcCeeecccccccee
Q 043649 118 LRFRLLRQQGYRISCDIFGGFK 139 (258)
Q Consensus 118 L~FRLLRqhGy~VS~DvF~~F~ 139 (258)
=.+.-|+++||++|+++++.+.
T Consensus 23 ~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 23 PLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHHHHHHcCcccCHHHHHHHH
Confidence 3344558889999998887654
No 8
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=24.73 E-value=56 Score=22.32 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=21.2
Q ss_pred hhhHHHHHHHhhhcCeeecccccccee
Q 043649 113 VHSVALRFRLLRQQGYRISCDIFGGFK 139 (258)
Q Consensus 113 L~~~AL~FRLLRqhGy~VS~DvF~~F~ 139 (258)
+-.++|.=|+|+..||.|-+=-|-.+.
T Consensus 17 ~g~t~lk~r~L~~~G~~Vi~Ip~~eW~ 43 (58)
T PF08373_consen 17 TGSTKLKHRHLKALGYKVISIPYYEWN 43 (58)
T ss_pred chHHHHHHHHHHHCCCEEEEecHHHHH
Confidence 457999999999999999765554443
No 9
>PF14164 YqzH: YqzH-like protein
Probab=23.40 E-value=36 Score=25.21 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=15.8
Q ss_pred HHHHhhhcCeeeccccccce
Q 043649 119 RFRLLRQQGYRISCDIFGGF 138 (258)
Q Consensus 119 ~FRLLRqhGy~VS~DvF~~F 138 (258)
.=+-|||.||++.++-+...
T Consensus 10 i~~~l~QYg~d~~~~pls~~ 29 (64)
T PF14164_consen 10 IINCLRQYGYDVECMPLSDE 29 (64)
T ss_pred HHHHHHHhCCcccCCCCCHH
Confidence 34679999999999877663
No 10
>PF11000 DUF2840: Protein of unknown function (DUF2840); InterPro: IPR021263 This bacterial family of proteins have no known function.
Probab=18.63 E-value=60 Score=27.81 Aligned_cols=15 Identities=40% Similarity=0.598 Sum_probs=12.6
Q ss_pred cchhHHHHHHhCccc
Q 043649 76 KLSLIDAVQRLGVAY 90 (258)
Q Consensus 76 ~L~lID~lqRLGI~y 90 (258)
-|..||+|+.|||+-
T Consensus 97 VL~~IDaiEalGidp 111 (149)
T PF11000_consen 97 VLQAIDAIEALGIDP 111 (149)
T ss_pred HHHHHhHHHHcCCCh
Confidence 366899999999974
Done!