BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043653
(212 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 116 bits (291), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 104/202 (51%), Gaps = 35/202 (17%)
Query: 30 VSPTFYDATCPNALNTIRTGIRNAVSRE------------------GCDAXXXXXXXXXX 71
+S FY CPNAL+TI++ + +AV++E GCDA
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 72 XXQKNALPNFKSARGFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAISRCRW 131
+K A PN S RGFE ID++KSQ+ES+CPGV+S + RD V +A+ W
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAV-AARDSV---VALGGASW 117
Query: 132 WTILTVKLGRRDSTTASRSLAE-NLPSFTDGLDKLISTFATKGLNAKYSVALS------- 183
V LGRRDSTTAS S A +LP+ L LIS F+ KG K V LS
Sbjct: 118 ----NVLLGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQ 173
Query: 184 TQCAFFRERIYNNQNNIDAGFA 205
QC FR RIY N++NID +A
Sbjct: 174 AQCTAFRTRIY-NESNIDPTYA 194
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 92/195 (47%), Gaps = 34/195 (17%)
Query: 27 GAQVSPTFYDATCPNALNTIRTGIRNAVSRE------------------GCDAXXXXXXX 68
G ++ TFY TCPNA +RT ++ A + GCDA
Sbjct: 1 GGSLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNS 60
Query: 69 XXXXXQKNALPNFKSARGFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAISR 128
+KNA PN SARGF +D++K+ LE+ CPGV+S + +++S
Sbjct: 61 GSIISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLAL-----ASQASVSLSG 115
Query: 129 CRWWTILTVKLGRRDSTTASRSLAE-NLPSFTDGLDKLISTFATKGLNAKYSVALS---- 183
W TV LGRRD+ TA+++ A ++PS T GL + S F+ GLN VALS
Sbjct: 116 GPSW---TVDLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHT 172
Query: 184 ---TQCAFFRERIYN 195
C F R++N
Sbjct: 173 FGRATCGVFSNRLFN 187
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 92/193 (47%), Gaps = 34/193 (17%)
Query: 29 QVSPTFYDATCPNALNTIRTGIRNAVSRE------------------GCDAXXXXXXXXX 70
Q++ TFY TCPNA +R+ I+ A+ + GCDA
Sbjct: 2 QLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGS 61
Query: 71 XXXQKNALPNFKSARGFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAISRCR 130
+KNA PN SARGF +D++K+ LE+ CPGV+S + ++++
Sbjct: 62 IQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLAL-----ASEASVSLAGGP 116
Query: 131 WWTILTVKLGRRDSTTASRSLAE-NLPSFTDGLDKLISTFATKGLNAKYSVALS------ 183
WT+L LGRRDS TA+ + A ++PS + L + F+ GLN VALS
Sbjct: 117 SWTVL---LGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFG 173
Query: 184 -TQCAFFRERIYN 195
+C F R++N
Sbjct: 174 RARCGVFNNRLFN 186
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 91/192 (47%), Gaps = 36/192 (18%)
Query: 29 QVSPTFYDATCPNALNTIRTGIRNAVSRE------------------GCDAXXXXXXXXX 70
Q+SP Y +CPN + +R + A+ E GCDA
Sbjct: 1 QLSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGADS 60
Query: 71 XXXQKNALPNFKSARGFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAISRCR 130
+K A+PN SARGFE ID++K+ +E+ CPGV+S + RD V+ +S
Sbjct: 61 ---EKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTL-AARDSVV----LSGGP 112
Query: 131 WWTILTVKLGRRDSTTASRSLAENLPSFTDGLDKLISTFATKGLNAKYSVALS------- 183
W V LGR+D A+++ A NLPS + LD +I+ F LN VALS
Sbjct: 113 GW---RVALGRKDGLVANQNSANNLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQ 169
Query: 184 TQCAFFRERIYN 195
+CA F R++N
Sbjct: 170 AKCAVFSNRLFN 181
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 85/197 (43%), Gaps = 35/197 (17%)
Query: 29 QVSPTFYDATCPNALNTIRTGIRNAVSRE------------------GCDAXXXXXXXXX 70
Q++PTFYD +CPN N +R I N + + GCDA
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 71 XXXQKNALPNFKSARGFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAISRCR 130
+K+A N SARGF ID +K+ +ES CP +S I + ++
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTI-----AAQQSVTLAGGP 115
Query: 131 WWTILTVKLGRRDSTTASRSLAE-NLPSFTDGLDKLISTFATKGLNAKYS-VALS----- 183
W V LGRRDS A LA NLP+ L +L +F GLN VALS
Sbjct: 116 SW---RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTF 172
Query: 184 --TQCAFFRERIYNNQN 198
QC F +R+YN N
Sbjct: 173 GKNQCRFIMDRLYNFSN 189
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 85/197 (43%), Gaps = 35/197 (17%)
Query: 29 QVSPTFYDATCPNALNTIRTGIRNAVSRE------------------GCDAXXXXXXXXX 70
Q++PTFYD +CPN N +R I N + + GCDA
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 71 XXXQKNALPNFKSARGFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAISRCR 130
+K+A N SARGF ID +K+ +ES CP +S I + + L R
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR-- 119
Query: 131 WWTILTVKLGRRDSTTASRSLAE-NLPSFTDGLDKLISTFATKGLNAKYS-VALS----- 183
V LGRRDS A LA NLP+ L +L +F GLN VALS
Sbjct: 120 ------VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTF 173
Query: 184 --TQCAFFRERIYNNQN 198
QC F +R+YN N
Sbjct: 174 GKNQCRFIMDRLYNFSN 190
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 85/197 (43%), Gaps = 35/197 (17%)
Query: 29 QVSPTFYDATCPNALNTIRTGIRNAVSRE------------------GCDAXXXXXXXXX 70
Q++PTFYD +CPN N +R I N + + GCDA
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 71 XXXQKNALPNFKSARGFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAISRCR 130
+K+A N SARGF ID +K+ +ES CP +S I + + L R
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR-- 118
Query: 131 WWTILTVKLGRRDSTTASRSLAE-NLPSFTDGLDKLISTFATKGLNAKYS-VALS----- 183
V LGRRDS A LA NLP+ L +L +F GLN VALS
Sbjct: 119 ------VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSF 172
Query: 184 --TQCAFFRERIYNNQN 198
QC F +R+YN N
Sbjct: 173 GKNQCRFIMDRLYNFSN 189
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 85/197 (43%), Gaps = 35/197 (17%)
Query: 29 QVSPTFYDATCPNALNTIRTGIRNAVSRE------------------GCDAXXXXXXXXX 70
Q++PTFYD +CPN N +R I N + + GCDA
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTS 60
Query: 71 XXXQKNALPNFKSARGFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAISRCR 130
+K+A N SARGF ID +K+ +ES CP +S I + + L R
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR-- 118
Query: 131 WWTILTVKLGRRDSTTASRSLAE-NLPSFTDGLDKLISTFATKGLNAKYS-VALS----- 183
V LGRRDS A LA NLP+ L +L +F GLN VALS
Sbjct: 119 ------VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTF 172
Query: 184 --TQCAFFRERIYNNQN 198
QC F +R+YN N
Sbjct: 173 GKNQCRFIMDRLYNFSN 189
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 85/197 (43%), Gaps = 35/197 (17%)
Query: 29 QVSPTFYDATCPNALNTIRTGIRNAVSRE------------------GCDAXXXXXXXXX 70
Q++PTFYD +CPN N +R I N + + GCDA
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 71 XXXQKNALPNFKSARGFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAISRCR 130
+K+A N SARGF ID +K+ +ES CP +S I + + L R
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR-- 118
Query: 131 WWTILTVKLGRRDSTTASRSLAE-NLPSFTDGLDKLISTFATKGLNAKYS-VALS----- 183
V LGRRDS A LA NLP+ L +L +F GLN VALS
Sbjct: 119 ------VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTF 172
Query: 184 --TQCAFFRERIYNNQN 198
QC F +R+YN N
Sbjct: 173 GKNQCRFIMDRLYNFSN 189
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 85/197 (43%), Gaps = 35/197 (17%)
Query: 29 QVSPTFYDATCPNALNTIRTGIRNAVSRE------------------GCDAXXXXXXXXX 70
Q++PTFYD +CPN N +R I N + + GCDA
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 71 XXXQKNALPNFKSARGFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAISRCR 130
+K+A N SARGF ID +K+ +ES CP +S I + + L R
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR-- 119
Query: 131 WWTILTVKLGRRDSTTASRSLAE-NLPSFTDGLDKLISTFATKGLNAKYS-VALS----- 183
V LGRRDS A LA NLP+ L +L +F GLN VALS
Sbjct: 120 ------VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTF 173
Query: 184 --TQCAFFRERIYNNQN 198
QC F +R+YN N
Sbjct: 174 GKNQCRFIMDRLYNFSN 190
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 85/197 (43%), Gaps = 35/197 (17%)
Query: 29 QVSPTFYDATCPNALNTIRTGIRNAVSRE------------------GCDAXXXXXXXXX 70
Q++PTFYD +CPN N +R I N + + GCDA
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTS 61
Query: 71 XXXQKNALPNFKSARGFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAISRCR 130
+K+A N SARGF ID +K+ +ES CP +S I + + L R
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR-- 119
Query: 131 WWTILTVKLGRRDSTTASRSLAE-NLPSFTDGLDKLISTFATKGLNAKYS-VALS----- 183
V LGRRDS A LA NLP+ L +L +F GLN VALS
Sbjct: 120 ------VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTF 173
Query: 184 --TQCAFFRERIYNNQN 198
QC F +R+YN N
Sbjct: 174 GKNQCRFIMDRLYNFSN 190
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 85/197 (43%), Gaps = 35/197 (17%)
Query: 29 QVSPTFYDATCPNALNTIRTGIRNAVSRE------------------GCDAXXXXXXXXX 70
Q++PTFYD +CPN N +R I N + + GCDA
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 71 XXXQKNALPNFKSARGFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAISRCR 130
+K+A N SARGF ID +K+ +ES CP +S I + + L R
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR-- 118
Query: 131 WWTILTVKLGRRDSTTASRSLAE-NLPSFTDGLDKLISTFATKGLNAKYS-VALS----- 183
V LGRRDS A LA NLP+ L +L +F GLN VALS
Sbjct: 119 ------VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTF 172
Query: 184 --TQCAFFRERIYNNQN 198
QC F +R+YN N
Sbjct: 173 GKNQCRFIMDRLYNFSN 189
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 84/197 (42%), Gaps = 35/197 (17%)
Query: 29 QVSPTFYDATCPNALNTIRTGIRNAVSRE------------------GCDAXXXXXXXXX 70
Q++PTFYD +CPN N +R I N + + GCDA
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 71 XXXQKNALPNFKSARGFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAISRCR 130
+K+A N SARGF ID +K+ +ES CP +S I + + L R
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR-- 119
Query: 131 WWTILTVKLGRRDSTTASRSLAE-NLPSFTDGLDKLISTFATKGLNAKYS-VALS----- 183
V LGRRDS A LA NLP L +L +F GLN VALS
Sbjct: 120 ------VPLGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTF 173
Query: 184 --TQCAFFRERIYNNQN 198
QC F +R+YN N
Sbjct: 174 GKNQCRFIMDRLYNFSN 190
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 84/197 (42%), Gaps = 35/197 (17%)
Query: 29 QVSPTFYDATCPNALNTIRTGIRNAVSRE------------------GCDAXXXXXXXXX 70
Q++PTFYD +CPN N +R I N + + GCDA
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 71 XXXQKNALPNFKSARGFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAISRCR 130
+K+A N SARGF ID +K+ +ES CP +S I + + L R
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR-- 119
Query: 131 WWTILTVKLGRRDSTTASRSLAE-NLPSFTDGLDKLISTFATKGLNAKYS-VALS----- 183
V LGRRDS A LA NLP L +L +F GLN VALS
Sbjct: 120 ------VPLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTF 173
Query: 184 --TQCAFFRERIYNNQN 198
QC F +R+YN N
Sbjct: 174 GKNQCRFIMDRLYNFSN 190
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 96/209 (45%), Gaps = 40/209 (19%)
Query: 29 QVSPTFYDATCPNALNTIRTGIRNA----------VSR--------EGCDAXXXXXXXXX 70
Q++PTFY TCPN + I +A + R +GCD
Sbjct: 1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDT 60
Query: 71 XXXQKNALPNFKSARGFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIA--ISR 128
+++ALPN S RG + ++ +K+ +E+ CP +S I EIA +
Sbjct: 61 IESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAI-------AAEIASVLGG 113
Query: 129 CRWWTILTVKLGRRDSTTASRSLA-ENLPSFTDGLDKLISTFATKGLNAKYSVALS---- 183
W V LGRRDS TA+R+LA +NLP+ L +L ++FA +GLN V LS
Sbjct: 114 GPGW---PVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHT 170
Query: 184 ---TQCAFFRERIYN--NQNNIDAGFAST 207
+C+ F R+YN N N D +T
Sbjct: 171 FGRARCSTFINRLYNFSNTGNPDPTLNTT 199
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 84/197 (42%), Gaps = 35/197 (17%)
Query: 29 QVSPTFYDATCPNALNTIRTGIRNAVSRE------------------GCDAXXXXXXXXX 70
Q++PTFYD +CPN N +R I N + + GCDA
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 71 XXXQKNALPNFKSARGFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAISRCR 130
+K+A N SARGF ID +K+ +ES CP +S I + + L R
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR-- 118
Query: 131 WWTILTVKLGRRDSTTASRSLAE-NLPSFTDGLDKLISTFATKGLNAKYS-VAL------ 182
V LGRRDS A LA NLP+ L +L +F GLN VAL
Sbjct: 119 ------VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTF 172
Query: 183 -STQCAFFRERIYNNQN 198
QC F +R+YN N
Sbjct: 173 GKNQCRFIMDRLYNFSN 189
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 84/197 (42%), Gaps = 35/197 (17%)
Query: 29 QVSPTFYDATCPNALNTIRTGIRNAVSRE------------------GCDAXXXXXXXXX 70
Q++PTFYD +CPN N +R I N + + GCDA
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 71 XXXQKNALPNFKSARGFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAISRCR 130
+K+A N SARGF ID +K+ +ES CP +S I + + L R
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR-- 119
Query: 131 WWTILTVKLGRRDSTTASRSLAE-NLPSFTDGLDKLISTFATKGLNAKYS-VALS----- 183
V LGRRDS A LA NLP+ L +L +F GLN VALS
Sbjct: 120 ------VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTF 173
Query: 184 --TQCAFFRERIYNNQN 198
QC +R+YN N
Sbjct: 174 GKNQCRSIMDRLYNFSN 190
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 75/188 (39%), Gaps = 34/188 (18%)
Query: 34 FYDATCPNA----------LNTIRTGIRNAVSR--------EGCDAXXXXXXXXXXXXQK 75
FY+ +CP A +GI + R GCDA +K
Sbjct: 6 FYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANNTAEK 65
Query: 76 NALPNFKSARGFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAISRCRWWTIL 135
+A+PN S RGFE I + KS +E+ CP +S RD I+
Sbjct: 66 DAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAF-AARDSANLAGNIT-------Y 117
Query: 136 TVKLGRRDSTTASRSLAE-NLPSFTDGLDKLISTFATKGLNAKYSVALS-------TQCA 187
V GRRD T + S A +PS +LI++FA K L A V LS C+
Sbjct: 118 QVPSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCS 177
Query: 188 FFRERIYN 195
F R+YN
Sbjct: 178 SFTNRLYN 185
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 76/189 (40%), Gaps = 35/189 (18%)
Query: 34 FYDATCPNALNTIRTGIRNAVSRE------------------GCDAXXXXXXXXXXXXQK 75
FY TCP A + +R ++ AV ++ GCDA ++
Sbjct: 13 FYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATGPGEQ 72
Query: 76 NALPNFK-SARGFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAISRCRWWTI 134
A PN F+A++ ++ +LE C G + S RD V+
Sbjct: 73 QAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVS-------GGPD 125
Query: 135 LTVKLGRRDSTT--ASRSLAENLPSFTDGLDKLISTFATKGLNAKYSVALS-------TQ 185
V LGRRDS + +++ + +LP + + L++ GL+A V +S
Sbjct: 126 YRVPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAH 185
Query: 186 CAFFRERIY 194
C+ F +R++
Sbjct: 186 CSSFEDRLF 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,722,647
Number of Sequences: 62578
Number of extensions: 142642
Number of successful extensions: 359
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 301
Number of HSP's gapped (non-prelim): 19
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)