Query 043653
Match_columns 212
No_of_seqs 149 out of 1276
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 07:02:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043653.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043653hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 1.4E-58 3E-63 416.8 14.1 174 25-211 20-226 (324)
2 cd00693 secretory_peroxidase H 100.0 2E-52 4.2E-57 374.1 13.1 173 29-211 1-205 (298)
3 PF00141 peroxidase: Peroxidas 100.0 1.1E-40 2.5E-45 288.4 9.3 148 44-207 18-175 (230)
4 cd00692 ligninase Ligninase an 100.0 1.5E-34 3.1E-39 261.5 10.8 162 29-209 23-207 (328)
5 PLN02364 L-ascorbate peroxidas 100.0 7.2E-34 1.6E-38 249.0 12.7 157 32-210 3-196 (250)
6 cd00691 ascorbate_peroxidase A 100.0 2E-33 4.3E-38 246.6 13.5 155 41-210 11-195 (253)
7 PLN02608 L-ascorbate peroxidas 100.0 1.5E-33 3.3E-38 251.1 11.6 141 44-210 33-193 (289)
8 PLN02879 L-ascorbate peroxidas 100.0 4.7E-32 1E-36 237.6 12.4 144 45-210 37-196 (251)
9 cd08201 plant_peroxidase_like_ 100.0 7.8E-30 1.7E-34 224.4 8.9 145 41-210 41-212 (264)
10 cd00314 plant_peroxidase_like 100.0 3.2E-29 6.9E-34 218.6 11.9 153 41-210 17-195 (255)
11 TIGR00198 cat_per_HPI catalase 99.9 8.1E-24 1.8E-28 206.3 11.1 168 29-210 38-281 (716)
12 cd00649 catalase_peroxidase_1 99.9 5.5E-23 1.2E-27 190.0 9.8 167 29-209 28-271 (409)
13 PRK15061 catalase/hydroperoxid 99.8 1.4E-19 2.9E-24 176.4 11.0 167 29-209 40-284 (726)
14 cd08200 catalase_peroxidase_2 99.6 1.2E-14 2.7E-19 129.9 10.4 151 45-210 33-223 (297)
15 TIGR00198 cat_per_HPI catalase 99.4 2.9E-12 6.3E-17 125.9 10.1 135 58-210 470-636 (716)
16 PRK15061 catalase/hydroperoxid 99.3 4.3E-12 9.3E-17 124.4 10.5 138 58-209 477-647 (726)
17 COG0376 KatG Catalase (peroxid 98.9 9.2E-09 2E-13 98.3 9.0 100 71-183 125-263 (730)
18 COG0376 KatG Catalase (peroxid 86.0 1.6 3.4E-05 43.0 5.6 103 74-183 498-617 (730)
19 PF07994 NAD_binding_5: Myo-in 59.3 29 0.00064 31.5 6.3 102 38-175 126-227 (295)
20 PLN02438 inositol-3-phosphate 53.4 97 0.0021 30.5 9.0 65 44-116 207-271 (510)
21 PF07172 GRP: Glycine rich pro 50.8 8.2 0.00018 29.4 1.1 6 1-6 1-6 (95)
22 COG0167 PyrD Dihydroorotate de 37.1 1E+02 0.0023 28.2 6.3 100 58-182 186-306 (310)
23 cd02940 DHPD_FMN Dihydropyrimi 27.9 1.5E+02 0.0032 26.4 5.6 46 87-132 239-291 (299)
24 PF04225 OapA: Opacity-associa 25.7 43 0.00093 24.6 1.5 22 162-183 10-31 (85)
25 KOG3803 Transcription factor c 23.2 49 0.0011 33.6 1.7 31 37-67 670-705 (968)
26 PF01756 ACOX: Acyl-CoA oxidas 23.0 22 0.00047 29.4 -0.7 18 128-146 137-154 (187)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.4e-58 Score=416.78 Aligned_cols=174 Identities=42% Similarity=0.707 Sum_probs=164.6
Q ss_pred cCCCCCCcCcccCCChhHHHHHHHHHHHHHhhc------------------CCCccccccCCCCCcchhccCCCCCCCch
Q 043653 25 QSGAQVSPTFYDATCPNALNTIRTGIRNAVSRE------------------GCDASILLDDSSSIDSQKNALPNFKSARG 86 (212)
Q Consensus 25 ~~~~~L~~~fY~~sCP~ae~iVr~~v~~~~~~d------------------GcDaSILl~~t~~~~~E~~a~~N~~~lrg 86 (212)
.+.++|+++||++|||++|+|||++|++++++| ||||||||+++. .||++++|. ++||
T Consensus 20 ~~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~~---~Ek~a~~N~-~l~G 95 (324)
T PLN03030 20 VQGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGSN---TEKTALPNL-LLRG 95 (324)
T ss_pred chhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCCc---ccccCCCCc-Ccch
Confidence 345779999999999999999999999999999 999999999653 799999998 9999
Q ss_pred hHHHHHHHHHhhhhCCCccchhhHHHhhhhhhhHHHhhhhhcCcceeeceeecCCcCCCCccccccCCCCCCCCChHHHH
Q 043653 87 FEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAISRCRWWTILTVKLGRRDSTTASRSLAENLPSFTDGLDKLI 166 (212)
Q Consensus 87 ~~vI~~iK~~le~~cpg~VScADilal~Aardav~~~~~~~GGP~~~~~~v~lGRrD~~~s~~~~a~~LP~p~~~~~~l~ 166 (212)
||+|+.||+++|+.|||+||||||||+ ||||+|++ .|||+| +|++||||+++|.++.+++||.|+.++++|+
T Consensus 96 f~~i~~iK~~~e~~CPg~VSCADilal-AarDaV~~----~gGP~~---~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~ 167 (324)
T PLN03030 96 YDVIDDAKTQLEAACPGVVSCADILAL-AARDSVVL----TNGLTW---PVPTGRRDGRVSLASDASNLPGFTDSIDVQK 167 (324)
T ss_pred HHHHHHHHHHHHhhCCCcccHHHHHHH-Hhhccccc----cCCCce---eeeccccCCCCCCcccccCCcCCCCCHHHHH
Confidence 999999999999999999999999999 99999999 999999 9999999999987766668999999999999
Q ss_pred HHHHhCCCCccchhhhh-------cccccccccccC--------CCCCCCHHHHHHHHhh
Q 043653 167 STFATKGLNAKYSVALS-------TQCAFFRERIYN--------NQNNIDAGFASTRSRQ 211 (212)
Q Consensus 167 ~~F~~~Gl~~~dlVaLs-------ahC~~f~~Rly~--------dp~~~d~~~~~~L~~~ 211 (212)
+.|++||||.+|||+|| +||.+|.+|+|| || +|||.|+++||++
T Consensus 168 ~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp-~~d~~~~~~L~~~ 226 (324)
T PLN03030 168 QKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADP-SIDASFVPQLQAL 226 (324)
T ss_pred HHHHHcCCCHHHheeeeeccccceeeeeccccccccccCCCCCCCC-chhHHHHHHHhcc
Confidence 99999999999999999 999999999995 78 9999999999864
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2e-52 Score=374.07 Aligned_cols=173 Identities=42% Similarity=0.695 Sum_probs=163.8
Q ss_pred CCCcCcccCCChhHHHHHHHHHHHHHhhc------------------CCCccccccCCCCCcchhccCCCCCCCchhHHH
Q 043653 29 QVSPTFYDATCPNALNTIRTGIRNAVSRE------------------GCDASILLDDSSSIDSQKNALPNFKSARGFEAI 90 (212)
Q Consensus 29 ~L~~~fY~~sCP~ae~iVr~~v~~~~~~d------------------GcDaSILl~~t~~~~~E~~a~~N~~~lrg~~vI 90 (212)
||+++||+++||++|+|||++|++.+.+| ||||||||+++.++..|+++++|. +++||++|
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~-~l~g~~~i 79 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNL-SLRGFDVI 79 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCC-CcchhHHH
Confidence 69999999999999999999999999998 999999999887778999999998 99999999
Q ss_pred HHHHHHhhhhCCCccchhhHHHhhhhhhhHHHhhhhhcCcceeeceeecCCcCCCCccccccCCCCCCCCChHHHHHHHH
Q 043653 91 DSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAISRCRWWTILTVKLGRRDSTTASRSLAENLPSFTDGLDKLISTFA 170 (212)
Q Consensus 91 ~~iK~~le~~cpg~VScADilal~Aardav~~~~~~~GGP~~~~~~v~lGRrD~~~s~~~~a~~LP~p~~~~~~l~~~F~ 170 (212)
+.||+++|+.||++|||||||++ |+|+||++ +|||.| +|++||+|+.++.+..+.+||.|+.+++++++.|+
T Consensus 80 ~~iK~~~e~~cp~~VScADiial-Aar~av~~----~GGP~~---~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~ 151 (298)
T cd00693 80 DDIKAALEAACPGVVSCADILAL-AARDAVVL----AGGPSY---EVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLFA 151 (298)
T ss_pred HHHHHHHHhhCCCcccHHHHHHH-hhhhceec----cCCCcc---cccCCCcCCcccCcccccCCCCcccCHHHHHHHHH
Confidence 99999999999999999999999 99999999 999999 99999999998766544489999999999999999
Q ss_pred hCCCCccchhhhh-------cccccccccccC-------CCCCCCHHHHHHHHhh
Q 043653 171 TKGLNAKYSVALS-------TQCAFFRERIYN-------NQNNIDAGFASTRSRQ 211 (212)
Q Consensus 171 ~~Gl~~~dlVaLs-------ahC~~f~~Rly~-------dp~~~d~~~~~~L~~~ 211 (212)
++||+++|||||+ +||.+|.+|+|| || +||+.|+..|++.
T Consensus 152 ~~G~~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp-~~~~~~~~~L~~~ 205 (298)
T cd00693 152 SKGLTVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDP-TLDPAYAAQLRKK 205 (298)
T ss_pred HcCCCHHHheeecccceeeeeecccccccccCCCCCCCCCC-CccHHHHHHhcCC
Confidence 9999999999999 999999999995 78 9999999999864
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=1.1e-40 Score=288.38 Aligned_cols=148 Identities=43% Similarity=0.660 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHhhcCCCccccccCCCCCcchhccCCCCCCCc-hhHHHHHHHHHhhhhCCCccchhhHHHhhhhhhhHHH
Q 043653 44 NTIRTGIRNAVSREGCDASILLDDSSSIDSQKNALPNFKSAR-GFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLT 122 (212)
Q Consensus 44 ~iVr~~v~~~~~~dGcDaSILl~~t~~~~~E~~a~~N~~~lr-g~~vI~~iK~~le~~cpg~VScADilal~Aardav~~ 122 (212)
.+||-.+|+.+...|||||||+. ..|+++++|. +|+ |+++|+.||+++|+.||++|||||||++ |+|+||+.
T Consensus 18 ~~lRl~FHDc~~~~GcDgSil~~-----~~e~~~~~N~-gl~~~~~~i~~ik~~~~~~cp~~VS~ADiial-Aa~~av~~ 90 (230)
T PF00141_consen 18 GLLRLAFHDCFVYGGCDGSILLF-----SAEKDAPPNR-GLRDGFDVIDPIKAKLEAACPGVVSCADIIAL-AARDAVEL 90 (230)
T ss_dssp HHHHHHHHHHTTHTSSSSGGGGS-----TTGGGSGGGT-THHHHHHHHHHHHHHHCHHSTTTS-HHHHHHH-HHHHHHHH
T ss_pred HHHHHHccccccccccccceecc-----cccccccccc-CcceeeechhhHHhhhcccccCCCCHHHHHHH-Hhhhcccc
Confidence 57888888887656999999993 4799999998 998 9999999999999999999999999999 99999999
Q ss_pred hhhhhcCcceeeceeecCCcCCCCccccccCCCCCCCCChHHHHHHHHhCCCCccchhhhh-------cccccccccccC
Q 043653 123 EIAISRCRWWTILTVKLGRRDSTTASRSLAENLPSFTDGLDKLISTFATKGLNAKYSVALS-------TQCAFFRERIYN 195 (212)
Q Consensus 123 ~~~~~GGP~~~~~~v~lGRrD~~~s~~~~a~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-------ahC~~f~~Rly~ 195 (212)
+|||.| +|++||+|++++++.++.+||.|+.++++|++.|+++|||++|||||+ +||.+|. |+|.
T Consensus 91 ----~GGP~~---~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c~~f~-rl~~ 162 (230)
T PF00141_consen 91 ----CGGPRI---PVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHCSSFS-RLYF 162 (230)
T ss_dssp ----TTGGHS---HBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESGGCTG-GTSC
T ss_pred ----cccccc---cccccccccccccccccccccccccccchhhhhhhccccchhhhcceecccccccceecccc-cccc
Confidence 999999 999999999999886644699999999999999999999999999999 9999999 9995
Q ss_pred --CCCCCCHHHHHH
Q 043653 196 --NQNNIDAGFAST 207 (212)
Q Consensus 196 --dp~~~d~~~~~~ 207 (212)
|| +||+.|+.+
T Consensus 163 ~~dp-~~d~~~~~~ 175 (230)
T PF00141_consen 163 PPDP-TMDPGYAGQ 175 (230)
T ss_dssp SSGT-TSTHHHHHH
T ss_pred cccc-cccccccee
Confidence 67 888888764
No 4
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.5e-34 Score=261.54 Aligned_cols=162 Identities=19% Similarity=0.259 Sum_probs=141.9
Q ss_pred CCCcCcc-cCCC-hhHHHHHHHHHHHHHhh-----------cCCCccccccCCCCCcchhccCCCCCCCchhHHHHHHHH
Q 043653 29 QVSPTFY-DATC-PNALNTIRTGIRNAVSR-----------EGCDASILLDDSSSIDSQKNALPNFKSARGFEAIDSVKS 95 (212)
Q Consensus 29 ~L~~~fY-~~sC-P~ae~iVr~~v~~~~~~-----------dGcDaSILl~~t~~~~~E~~a~~N~~~lrg~~vI~~iK~ 95 (212)
.|+..|+ .+.| |.+.++||-.+|+.+.. .|||||||++.+ .|+++++|. +|+ ++|+.+|.
T Consensus 23 dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~~~N~-gL~--~vvd~lk~ 95 (328)
T cd00692 23 DIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAFHANI-GLD--EIVEALRP 95 (328)
T ss_pred HHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccCCCCC-CHH--HHHHHHHH
Confidence 4667766 5578 89999999999999852 299999999853 699999997 887 89999999
Q ss_pred HhhhhCCCccchhhHHHhhhhhhhHHHhhhhhcCcceeeceeecCCcCCCCccccccCCCCCCCCChHHHHHHHHhCCCC
Q 043653 96 QLESVCPGVLSSLIFYKINKIRDMVLTEIAISRCRWWTILTVKLGRRDSTTASRSLAENLPSFTDGLDKLISTFATKGLN 175 (212)
Q Consensus 96 ~le~~cpg~VScADilal~Aardav~~~~~~~GGP~~~~~~v~lGRrD~~~s~~~~a~~LP~p~~~~~~l~~~F~~~Gl~ 175 (212)
.+|+.| |||||||++ |+|+||+.| .|||+| +|++||+|++++.+.+ +||.|+.++++|++.|++||||
T Consensus 96 ~~e~~c---VScADiial-Aa~~AV~~~---~GGP~i---~v~~GR~D~~~s~~~g--~LP~p~~sv~~l~~~F~~~Gf~ 163 (328)
T cd00692 96 FHQKHN---VSMADFIQF-AGAVAVSNC---PGAPRL---EFYAGRKDATQPAPDG--LVPEPFDSVDKILARFADAGFS 163 (328)
T ss_pred HHHhcC---cCHHHHHHH-HHHHHHHhc---CCCCcc---cccCCCCCCCCCCccc--CCCCCCCCHHHHHHHHHHcCCC
Confidence 999998 999999999 999999974 799999 9999999999987655 8999999999999999999999
Q ss_pred ccchhhhh-cccccccccccC-------C--CCCCCHHHHHHHH
Q 043653 176 AKYSVALS-TQCAFFRERIYN-------N--QNNIDAGFASTRS 209 (212)
Q Consensus 176 ~~dlVaLs-ahC~~f~~Rly~-------d--p~~~d~~~~~~L~ 209 (212)
++|||||+ +|.....++... | |..+|..|+.++.
T Consensus 164 ~~E~VaLsGAHTiG~a~~~Dps~~g~p~D~TP~~FDn~Yf~~ll 207 (328)
T cd00692 164 PDELVALLAAHSVAAQDFVDPSIAGTPFDSTPGVFDTQFFIETL 207 (328)
T ss_pred HHHHhhhcccccccccCCCCCCCCCCCCCCCcchhcHHHHHHHH
Confidence 99999999 999887765321 2 5578999998854
No 5
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=7.2e-34 Score=248.96 Aligned_cols=157 Identities=20% Similarity=0.211 Sum_probs=127.5
Q ss_pred cCcccC--CChhHHHHHHHHHHHHHhhc------------------------CCCccccccCCCCCcchhccCCCCCCC-
Q 043653 32 PTFYDA--TCPNALNTIRTGIRNAVSRE------------------------GCDASILLDDSSSIDSQKNALPNFKSA- 84 (212)
Q Consensus 32 ~~fY~~--sCP~ae~iVr~~v~~~~~~d------------------------GcDaSILl~~t~~~~~E~~a~~N~~~l- 84 (212)
.+||.. -||.+++.++..+++.+... ||||||.. ..|+++++|. +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~------~~E~~~~~N~-gl~ 75 (250)
T PLN02364 3 KNYPTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF------DAEQAHGANS-GIH 75 (250)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc------cccccCCCcc-CHH
Confidence 355533 36777776666666655322 89999944 3699999998 78
Q ss_pred chhHHHHHHHHHhhhhCCCccchhhHHHhhhhhhhHHHhhhhhcCcceeeceeecCCcCCCCccccccCCCCCCCCChHH
Q 043653 85 RGFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAISRCRWWTILTVKLGRRDSTTASRSLAENLPSFTDGLDK 164 (212)
Q Consensus 85 rg~~vI~~iK~~le~~cpg~VScADilal~Aardav~~~~~~~GGP~~~~~~v~lGRrD~~~s~~~~a~~LP~p~~~~~~ 164 (212)
+||++|+.||+++ ++|||||||++ |||+||+. +|||.| +|++||+|++++++.+ +||.|+.++++
T Consensus 76 ~~~~~i~~ik~~~-----~~VScADilal-AardAV~~----~GGP~~---~v~~GR~D~~~s~~~~--~lP~p~~~~~~ 140 (250)
T PLN02364 76 IALRLLDPIREQF-----PTISFADFHQL-AGVVAVEV----TGGPDI---PFHPGREDKPQPPPEG--RLPDATKGCDH 140 (250)
T ss_pred HHHHHHHHHHHHc-----CCcCHHHHHHH-HHHHHHHh----cCCCee---CCCCCCCCcccccccC--CCCCCCcCHHH
Confidence 8999999999998 68999999999 99999999 999999 9999999999987644 89999999999
Q ss_pred HHHHHHh-CCCCccchhhhh-------ccccc--ccccccCCCCCCCHHHHHHHHh
Q 043653 165 LISTFAT-KGLNAKYSVALS-------TQCAF--FRERIYNNQNNIDAGFASTRSR 210 (212)
Q Consensus 165 l~~~F~~-~Gl~~~dlVaLs-------ahC~~--f~~Rly~dp~~~d~~~~~~L~~ 210 (212)
|++.|++ +|||++|||||+ +||.- |..-....|.++|..|+..|..
T Consensus 141 l~~~F~~~~Gl~~~d~VaLsGaHTiG~~hc~r~~~~g~~~~tp~~fDn~Yy~~ll~ 196 (250)
T PLN02364 141 LRDVFAKQMGLSDKDIVALSGAHTLGRCHKDRSGFEGAWTSNPLIFDNSYFKELLS 196 (250)
T ss_pred HHHHHHHhcCCCHHHheeeecceeeccccCCCCCCCCCCCCCCCccchHHHHHHhc
Confidence 9999997 599999999999 67721 1111112566899999999875
No 6
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=2e-33 Score=246.58 Aligned_cols=155 Identities=18% Similarity=0.175 Sum_probs=127.3
Q ss_pred hHHHHHHHHHHHHHhhc----------------CCCccccccCCC---CCcchhccCCCCCCC-chhHHHHHHHHHhhhh
Q 043653 41 NALNTIRTGIRNAVSRE----------------GCDASILLDDSS---SIDSQKNALPNFKSA-RGFEAIDSVKSQLESV 100 (212)
Q Consensus 41 ~ae~iVr~~v~~~~~~d----------------GcDaSILl~~t~---~~~~E~~a~~N~~~l-rg~~vI~~iK~~le~~ 100 (212)
+.++|||++|++.++ + +||+|++.+.+. .+.+|+++++|. +| +||++|+.||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~~d~s~~~~G~d~s~~~~~E~~~~~N~-~L~~~~~~i~~iK~~~--- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSGTYDKETKTGGSNGTIRFDPELNHGANA-GLDIARKLLEPIKKKY--- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhccccccCCCCCCccccchhhcCCcccc-chHHHHHHHHHHHHHc---
Confidence 345566666666666 4 788888775432 234799999998 88 8999999999886
Q ss_pred CCCccchhhHHHhhhhhhhHHHhhhhhcCcceeeceeecCCcCCCCccccccC-CCCCCCCChHHHHHHHHhCCCCccch
Q 043653 101 CPGVLSSLIFYKINKIRDMVLTEIAISRCRWWTILTVKLGRRDSTTASRSLAE-NLPSFTDGLDKLISTFATKGLNAKYS 179 (212)
Q Consensus 101 cpg~VScADilal~Aardav~~~~~~~GGP~~~~~~v~lGRrD~~~s~~~~a~-~LP~p~~~~~~l~~~F~~~Gl~~~dl 179 (212)
++|||||||++ |||+||+. +|||.| +|++||||+.++....++ +||.|+.+++++++.|+++||+++||
T Consensus 86 --~~VScADilal-Aar~Av~~----~GGP~~---~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~ 155 (253)
T cd00691 86 --PDISYADLWQL-AGVVAIEE----MGGPKI---PFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEI 155 (253)
T ss_pred --CCCCHHHHHHH-HHHHHHHH----cCCCcc---CcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHH
Confidence 48999999999 99999999 999999 999999999999876677 89999999999999999999999999
Q ss_pred hhhh-------ccccccc--ccccCCCCCCCHHHHHHHHh
Q 043653 180 VALS-------TQCAFFR--ERIYNNQNNIDAGFASTRSR 210 (212)
Q Consensus 180 VaLs-------ahC~~f~--~Rly~dp~~~d~~~~~~L~~ 210 (212)
|||+ +||..+. .-....|..+|..|++.|..
T Consensus 156 VaLsGaHTiG~a~c~~~~~~g~~~~tp~~FDn~Yy~~ll~ 195 (253)
T cd00691 156 VALSGAHTLGRCHKERSGYDGPWTKNPLKFDNSYFKELLE 195 (253)
T ss_pred HHhcccceeecccccCCCCCCCCCCCCCcccHHHHHHHhc
Confidence 9999 6664320 00012566899999999875
No 7
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=1.5e-33 Score=251.06 Aligned_cols=141 Identities=20% Similarity=0.199 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHhhc------CCCccccccCCCCCcchhccCCCCCCC-chhHHHHHHHHHhhhhCCCccchhhHHHhhhh
Q 043653 44 NTIRTGIRNAVSRE------GCDASILLDDSSSIDSQKNALPNFKSA-RGFEAIDSVKSQLESVCPGVLSSLIFYKINKI 116 (212)
Q Consensus 44 ~iVr~~v~~~~~~d------GcDaSILl~~t~~~~~E~~a~~N~~~l-rg~~vI~~iK~~le~~cpg~VScADilal~Aa 116 (212)
.+||...|+.+..+ ||||||++. .|+++++|. +| +||++|+.||+++ ++|||||||++ ||
T Consensus 33 ~llRLaFHDc~t~d~~~~~gGcDgSIll~------~E~~~~~N~-gL~~g~~vid~iK~~~-----~~VScADilal-Aa 99 (289)
T PLN02608 33 IMLRLAWHDAGTYDAKTKTGGPNGSIRNE------EEYSHGANN-GLKIAIDLCEPVKAKH-----PKITYADLYQL-AG 99 (289)
T ss_pred HHHHHhhhhcCCcCCCCCCCCCCeeeecc------cccCCcccc-chHHHHHHHHHHHHHc-----CCcCHHHHHHH-HH
Confidence 58999999888444 999999983 699999998 99 5999999999987 58999999999 99
Q ss_pred hhhHHHhhhhhcCcceeeceeecCCcCCCCccccccCCCCCCCCChHHHHHHHHhCCCCccchhhhh-------cccccc
Q 043653 117 RDMVLTEIAISRCRWWTILTVKLGRRDSTTASRSLAENLPSFTDGLDKLISTFATKGLNAKYSVALS-------TQCAFF 189 (212)
Q Consensus 117 rdav~~~~~~~GGP~~~~~~v~lGRrD~~~s~~~~a~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-------ahC~~f 189 (212)
|+||+. +|||.| +|++||+|++++++.+ +||+|+.+++++++.|+++|||++|||||+ +||.
T Consensus 100 rdAV~~----~GGP~~---~v~~GR~D~~~s~~~~--~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAHTiG~ahc~-- 168 (289)
T PLN02608 100 VVAVEV----TGGPTI---DFVPGRKDSNACPEEG--RLPDAKKGAKHLRDVFYRMGLSDKDIVALSGGHTLGRAHPE-- 168 (289)
T ss_pred HHHHHh----cCCCcc---CCCCCCCCCCcCCccC--CCcCCCCCHHHHHHHHHHcCCCHHHHhhhcccccccccccc--
Confidence 999999 999999 9999999999986543 899999999999999999999999999999 6773
Q ss_pred cccc-c-----CCCCCCCHHHHHHHHh
Q 043653 190 RERI-Y-----NNQNNIDAGFASTRSR 210 (212)
Q Consensus 190 ~~Rl-y-----~dp~~~d~~~~~~L~~ 210 (212)
|+ | ..|..+|..|+..|.+
T Consensus 169 --r~g~~g~~~~Tp~~FDN~Yy~~ll~ 193 (289)
T PLN02608 169 --RSGFDGPWTKEPLKFDNSYFVELLK 193 (289)
T ss_pred --CCCCCCCCCCCCCccChHHHHHHHc
Confidence 44 3 2465799999999865
No 8
>PLN02879 L-ascorbate peroxidase
Probab=99.97 E-value=4.7e-32 Score=237.57 Aligned_cols=144 Identities=23% Similarity=0.191 Sum_probs=123.6
Q ss_pred HHHHHHHHHHhhc------CCCccccccCCCCCcchhccCCCCCCCc-hhHHHHHHHHHhhhhCCCccchhhHHHhhhhh
Q 043653 45 TIRTGIRNAVSRE------GCDASILLDDSSSIDSQKNALPNFKSAR-GFEAIDSVKSQLESVCPGVLSSLIFYKINKIR 117 (212)
Q Consensus 45 iVr~~v~~~~~~d------GcDaSILl~~t~~~~~E~~a~~N~~~lr-g~~vI~~iK~~le~~cpg~VScADilal~Aar 117 (212)
+||-+.|++..-+ ||||||... .|+++++|. +|+ ++++|+.||+++ ++|||||||++ |+|
T Consensus 37 ~vRla~Hdagt~~~~~~~GG~~Gsirf~------~E~~~~~N~-gL~~~~~~i~~iK~~~-----~~VScADilal-Aa~ 103 (251)
T PLN02879 37 VLRLAWHSAGTFDVKTKTGGPFGTIRHP------QELAHDANN-GLDIAVRLLDPIKELF-----PILSYADFYQL-AGV 103 (251)
T ss_pred hHHHHHhhhccccCCCCCCCCCeeecCh------hhccCCCcC-ChHHHHHHHHHHHHHc-----CCcCHHHHHHH-HHH
Confidence 7888888886666 999999863 699999998 897 999999999988 68999999999 999
Q ss_pred hhHHHhhhhhcCcceeeceeecCCcCCCCccccccCCCCCCCCChHHHHHHHHhCCCCccchhhhh-------ccccc--
Q 043653 118 DMVLTEIAISRCRWWTILTVKLGRRDSTTASRSLAENLPSFTDGLDKLISTFATKGLNAKYSVALS-------TQCAF-- 188 (212)
Q Consensus 118 dav~~~~~~~GGP~~~~~~v~lGRrD~~~s~~~~a~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-------ahC~~-- 188 (212)
+||+. +|||+| +|++||+|+.++.+.+ +||.|+.++++|++.|++||||++|||||+ +||.-
T Consensus 104 ~AV~~----~GGP~~---~~~~GR~D~~~~~~~~--~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaHTiG~ah~~r~g 174 (251)
T PLN02879 104 VAVEI----TGGPEI---PFHPGRLDKVEPPPEG--RLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHTLGRCHKERSG 174 (251)
T ss_pred HHHHh----cCCCcc---CCCCCCCCCCCCCccc--CCCCCCCCHHHHHHHHHHcCCCHHHHeeeecccccccccccccc
Confidence 99999 999999 9999999999886544 899999999999999999999999999999 66631
Q ss_pred ccccccCCCCCCCHHHHHHHHh
Q 043653 189 FRERIYNNQNNIDAGFASTRSR 210 (212)
Q Consensus 189 f~~Rly~dp~~~d~~~~~~L~~ 210 (212)
+...+-..|..+|..|+..|..
T Consensus 175 ~~g~~d~tp~~FDN~Yy~~ll~ 196 (251)
T PLN02879 175 FEGAWTPNPLIFDNSYFKEILS 196 (251)
T ss_pred CCCCCCCCccceeHHHHHHHHc
Confidence 1111112466899999999864
No 9
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=99.96 E-value=7.8e-30 Score=224.35 Aligned_cols=145 Identities=19% Similarity=0.175 Sum_probs=122.2
Q ss_pred hHHHHHHHHHHHHHhhc------CCCccccccCCCCCcchhcc-CCCCCCCchhHHHHHHHHHhhhhCCCccchhhHHHh
Q 043653 41 NALNTIRTGIRNAVSRE------GCDASILLDDSSSIDSQKNA-LPNFKSARGFEAIDSVKSQLESVCPGVLSSLIFYKI 113 (212)
Q Consensus 41 ~ae~iVr~~v~~~~~~d------GcDaSILl~~t~~~~~E~~a-~~N~~~lrg~~vI~~iK~~le~~cpg~VScADilal 113 (212)
.+-++||-.+|+.+..+ ||||||+++.+ .+|+.. ..|. ++++|++|+.+ +||||||||+
T Consensus 41 ~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~---~~En~G~~~n~-~l~~~~~i~~~----------~VScADiial 106 (264)
T cd08201 41 AAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD---RPENIGSGFNT-TLNFFVNFYSP----------RSSMADLIAM 106 (264)
T ss_pred HHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC---ChhhccCchhh-ccccceeeccC----------ccCHHHHHHH
Confidence 56689999999999654 99999999853 378874 4554 88999988654 4999999999
Q ss_pred hhhhhhHHHhhhhhcCcceeeceeecCCcCCCCccccccCCCCCCCCChHHHHHHHHhCCCCccchhhhh--------cc
Q 043653 114 NKIRDMVLTEIAISRCRWWTILTVKLGRRDSTTASRSLAENLPSFTDGLDKLISTFATKGLNAKYSVALS--------TQ 185 (212)
Q Consensus 114 ~Aardav~~~~~~~GGP~~~~~~v~lGRrD~~~s~~~~a~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs--------ah 185 (212)
|+|+||+. +|||.| +|++||+|++++.+. .||.|+.++++|++.|++|||+++|||+|+ +|
T Consensus 107 -Aa~~AV~~----~GGP~i---~v~~GR~Da~~s~~~---glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ah 175 (264)
T cd08201 107 -GVVTSVAS----CGGPVV---PFRAGRIDATEAGQA---GVPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGVH 175 (264)
T ss_pred -HHHHHHHH----cCCCee---cccccCCCccccccc---cCCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeecc
Confidence 99999999 999999 999999999988765 599999999999999999999999999998 78
Q ss_pred ccccccccc------------CCCCCCCHHHHHHHHh
Q 043653 186 CAFFRERIY------------NNQNNIDAGFASTRSR 210 (212)
Q Consensus 186 C~~f~~Rly------------~dp~~~d~~~~~~L~~ 210 (212)
|..|.++.- ..|..+|..|..++.+
T Consensus 176 c~~f~~~~~~g~~~~~~~p~dstp~~FDn~~f~E~l~ 212 (264)
T cd08201 176 SEDFPEIVPPGSVPDTVLQFFDTTIQFDNKVVTEYLS 212 (264)
T ss_pred cccchhhcCCccccCCCCCCCCCccccchHHHHHHhc
Confidence 887733321 1355789999888763
No 10
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=99.96 E-value=3.2e-29 Score=218.61 Aligned_cols=153 Identities=20% Similarity=0.201 Sum_probs=130.8
Q ss_pred hHHHHHHHHHHHHHhhc-------CCCccccccCCCCCcchhccCCCCCCC-chhHHHHHHHHHhhhhCCCccchhhHHH
Q 043653 41 NALNTIRTGIRNAVSRE-------GCDASILLDDSSSIDSQKNALPNFKSA-RGFEAIDSVKSQLESVCPGVLSSLIFYK 112 (212)
Q Consensus 41 ~ae~iVr~~v~~~~~~d-------GcDaSILl~~t~~~~~E~~a~~N~~~l-rg~~vI~~iK~~le~~cpg~VScADila 112 (212)
-+-.+||-..|+.+..+ ||||||+++ .|+++++|. ++ +++++|+.||.++|. |++|||||||+
T Consensus 17 ~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~------~e~~~~~N~-~l~~~~~~l~~ik~~~~~--~~~vS~ADlia 87 (255)
T cd00314 17 LAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE------PELDRPENG-GLDKALRALEPIKSAYDG--GNPVSRADLIA 87 (255)
T ss_pred hHHHHHHHHHHHhccccccCCCCCCCCceEecc------ccccCcccc-cHHHHHHHHHHHHHHcCC--CCcccHHHHHH
Confidence 35579999999999875 999999997 399999998 64 899999999999998 99999999999
Q ss_pred hhhhhhhHHHhhhhh--cCcceeeceeecCCcCCCCcc--ccccC-CCCCCCCChHHHHHHHHhCCCCccchhhhh--c-
Q 043653 113 INKIRDMVLTEIAIS--RCRWWTILTVKLGRRDSTTAS--RSLAE-NLPSFTDGLDKLISTFATKGLNAKYSVALS--T- 184 (212)
Q Consensus 113 l~Aardav~~~~~~~--GGP~~~~~~v~lGRrD~~~s~--~~~a~-~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs--a- 184 (212)
+ |+++||+. + |||.| ++++||+|+..+. ...+. ++|.|..+++++++.|+++||+++|||||+ +
T Consensus 88 l-Aa~~Av~~----~~~ggp~~---~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~~GaH 159 (255)
T cd00314 88 L-AGAVAVES----TFGGGPLI---PFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALSAGAH 159 (255)
T ss_pred H-HHHHHHHH----hccCCCee---eeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhccCCe
Confidence 9 99999999 7 99999 9999999999663 22233 789999999999999999999999999999 4
Q ss_pred ------ccccccccccC----CCCCCCHHHHHHHHh
Q 043653 185 ------QCAFFRERIYN----NQNNIDAGFASTRSR 210 (212)
Q Consensus 185 ------hC~~f~~Rly~----dp~~~d~~~~~~L~~ 210 (212)
||..+..|+.. .|..+|..|+..|+.
T Consensus 160 ti~G~~~~~~~~~~~~~~~~~tp~~fDN~yy~~l~~ 195 (255)
T cd00314 160 TLGGKNHGDLLNYEGSGLWTSTPFTFDNAYFKNLLD 195 (255)
T ss_pred eccCcccCCCCCcccCCCCCCCCCccchHHHHHHhc
Confidence 44455554311 466899999999875
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.90 E-value=8.1e-24 Score=206.31 Aligned_cols=168 Identities=13% Similarity=0.062 Sum_probs=130.0
Q ss_pred CCCcCc-ccCCChhHH-HHHHHHHHHHHhhc--------CCCccccccC-------------CC-------CCcchhccC
Q 043653 29 QVSPTF-YDATCPNAL-NTIRTGIRNAVSRE--------GCDASILLDD-------------SS-------SIDSQKNAL 78 (212)
Q Consensus 29 ~L~~~f-Y~~sCP~ae-~iVr~~v~~~~~~d--------GcDaSILl~~-------------t~-------~~~~E~~a~ 78 (212)
.+-.+| |.+.+-++. +.||+.+++.+... |--|.|++.- ++ .+..|++.+
T Consensus 38 p~~~~f~y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~P~~sw~ 117 (716)
T TIGR00198 38 PMGEDFDYAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFAPLNSWP 117 (716)
T ss_pred CCCCCccHHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecccccCch
Confidence 355566 555554432 57888888888763 3334444430 00 023688888
Q ss_pred CCCCCC-chhHHHHHHHHHhhhhCCCccchhhHHHhhhhhhhHHHhhhhhcCcceeeceeecCCcCCCCcc---------
Q 043653 79 PNFKSA-RGFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAISRCRWWTILTVKLGRRDSTTAS--------- 148 (212)
Q Consensus 79 ~N~~~l-rg~~vI~~iK~~le~~cpg~VScADilal~Aardav~~~~~~~GGP~~~~~~v~lGRrD~~~s~--------- 148 (212)
.|. +| +...+++.|| ++||++|||||||+| |+++||+. +|||.| ++..||+|+..+.
T Consensus 118 ~N~-~Ldka~~lL~pIk----~kyp~~VS~ADLivL-AG~vAVE~----~Ggp~i---~f~~GR~D~~~~~~d~~~g~e~ 184 (716)
T TIGR00198 118 DNV-NLDKARRLLWPIK----KKYGNKLSWADLIIL-AGTVAYES----MGLKVF---GFAGGREDIWEPDKDIYWGAEK 184 (716)
T ss_pred hhh-hHHHHHHHHHHHH----HHCCCceeHHHHHHH-HHHHHHHH----hCCCcc---CCCCCCCCCCCccccccccccc
Confidence 897 55 4566666666 578999999999999 99999999 999999 9999999994321
Q ss_pred ----------------------------ccccCCCCCCCCChHHHHHHHHhCCCCccchhhhh--------ccccccccc
Q 043653 149 ----------------------------RSLAENLPSFTDGLDKLISTFATKGLNAKYSVALS--------TQCAFFRER 192 (212)
Q Consensus 149 ----------------------------~~~a~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs--------ahC~~f~~R 192 (212)
+++++.+|.|..++++|++.|.+||||.+|||||+ +||.+|.+|
T Consensus 185 ~~l~~~~~~~~~l~~p~a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~r 264 (716)
T TIGR00198 185 EWLTSSREDRESLENPLAATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAEL 264 (716)
T ss_pred chhhccccccccccccchhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCccccc
Confidence 23333699999999999999999999999999995 999999999
Q ss_pred ccCCCCCCCHHHHHHHHh
Q 043653 193 IYNNQNNIDAGFASTRSR 210 (212)
Q Consensus 193 ly~dp~~~d~~~~~~L~~ 210 (212)
+-.|| .++|.|++.|+.
T Consensus 265 lg~dP-~~~~~~~~gLg~ 281 (716)
T TIGR00198 265 IGPDP-EGAPIEEQGLGW 281 (716)
T ss_pred CCCCC-CcCHHHHHHhcc
Confidence 96799 999999999864
No 12
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=99.88 E-value=5.5e-23 Score=189.96 Aligned_cols=167 Identities=11% Similarity=0.082 Sum_probs=132.6
Q ss_pred CCCcCc-ccCCChhHH-HHHHHHHHHHHhhc--------CCCccccccC-------------CC-------CCcchhccC
Q 043653 29 QVSPTF-YDATCPNAL-NTIRTGIRNAVSRE--------GCDASILLDD-------------SS-------SIDSQKNAL 78 (212)
Q Consensus 29 ~L~~~f-Y~~sCP~ae-~iVr~~v~~~~~~d--------GcDaSILl~~-------------t~-------~~~~E~~a~ 78 (212)
.+-.+| |.+..-++. +.||+.|++.+... |--|.||+.- ++ .+..|++.+
T Consensus 28 p~~~~~~~~~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~pe~~~~ 107 (409)
T cd00649 28 PMGEDFNYAEEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFAPLNSWP 107 (409)
T ss_pred CCCCCCCHHHHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccccccCcH
Confidence 355566 555554444 78888898888753 3334444330 00 023688999
Q ss_pred CCCCCC-chhHHHHHHHHHhhhhCCCccchhhHHHhhhhhhhHHHhhhhhcCcceeeceeecCCcCCCCcc---------
Q 043653 79 PNFKSA-RGFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAISRCRWWTILTVKLGRRDSTTAS--------- 148 (212)
Q Consensus 79 ~N~~~l-rg~~vI~~iK~~le~~cpg~VScADilal~Aardav~~~~~~~GGP~~~~~~v~lGRrD~~~s~--------- 148 (212)
.|. +| +...+++.||++. |..||+||+|+| |+..||+. +|||.+ ++..||.|...+.
T Consensus 108 ~N~-gL~~a~~~L~pik~k~----~~~iS~ADL~~L-aG~~AiE~----~Ggp~i---pf~~GR~Da~~~~~~v~wg~~~ 174 (409)
T cd00649 108 DNV-NLDKARRLLWPIKQKY----GNKISWADLMIL-AGNVALES----MGFKTF---GFAGGREDVWEPDEDVYWGPEK 174 (409)
T ss_pred hhh-hHHHHHHHHHHHHHHc----CCCccHHHHHHH-HHHHHHHH----cCCCcc---cccCCCCccCCCccccccCcch
Confidence 998 77 5788899999877 346999999999 99999999 999999 9999999996542
Q ss_pred -----------------------------ccccCCCCCCCCChHHHHHHHHhCCCCccchhhh-h-------cccccccc
Q 043653 149 -----------------------------RSLAENLPSFTDGLDKLISTFATKGLNAKYSVAL-S-------TQCAFFRE 191 (212)
Q Consensus 149 -----------------------------~~~a~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaL-s-------ahC~~f~~ 191 (212)
+++++.||+|..++++|++.|.+||||.+||||| + +||.+|.+
T Consensus 175 ~~~~~~~~~~~~~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~ 254 (409)
T cd00649 175 EWLADKRYSGDRDLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPAS 254 (409)
T ss_pred hcccccccccchhhccchhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccc
Confidence 2333379999999999999999999999999999 5 99999999
Q ss_pred cccCCCCCCCHHHHHHHH
Q 043653 192 RIYNNQNNIDAGFASTRS 209 (212)
Q Consensus 192 Rly~dp~~~d~~~~~~L~ 209 (212)
|+..|| .+++.|+..|+
T Consensus 255 rlg~dP-~~~~~~~~gLg 271 (409)
T cd00649 255 HVGPEP-EAAPIEQQGLG 271 (409)
T ss_pred cCCCCC-CcCHHHHHhhc
Confidence 998899 99999999985
No 13
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.80 E-value=1.4e-19 Score=176.42 Aligned_cols=167 Identities=11% Similarity=0.072 Sum_probs=130.4
Q ss_pred CCCcCc-ccCCChhHH-HHHHHHHHHHHhhc--------CCCccccccC-------------CC-------CCcchhccC
Q 043653 29 QVSPTF-YDATCPNAL-NTIRTGIRNAVSRE--------GCDASILLDD-------------SS-------SIDSQKNAL 78 (212)
Q Consensus 29 ~L~~~f-Y~~sCP~ae-~iVr~~v~~~~~~d--------GcDaSILl~~-------------t~-------~~~~E~~a~ 78 (212)
.+-.+| |.+.+-++. +.||+.+++.+... |--|.+|+.- ++ .+..|++.+
T Consensus 40 p~~~~f~y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~pe~~w~ 119 (726)
T PRK15061 40 PMGEDFDYAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWP 119 (726)
T ss_pred CCCCCCCHHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCcccccch
Confidence 355666 565554433 67888888888753 3333333330 00 034688889
Q ss_pred CCCCCC-chhHHHHHHHHHhhhhCCCccchhhHHHhhhhhhhHHHhhhhhcCcceeeceeecCCcCCCCccc--------
Q 043653 79 PNFKSA-RGFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAISRCRWWTILTVKLGRRDSTTASR-------- 149 (212)
Q Consensus 79 ~N~~~l-rg~~vI~~iK~~le~~cpg~VScADilal~Aardav~~~~~~~GGP~~~~~~v~lGRrD~~~s~~-------- 149 (212)
.|. +| ++..+++.||++. |..||+||+|+| |+..||+. +|||.+ ++..||.|...+..
T Consensus 120 ~N~-gL~ka~~~L~pik~ky----~~~iS~ADLi~L-aG~vAiE~----~Ggp~i---~f~~GR~D~~~~~~~v~wg~e~ 186 (726)
T PRK15061 120 DNV-NLDKARRLLWPIKQKY----GNKISWADLMIL-AGNVALES----MGFKTF---GFAGGREDVWEPEEDVYWGPEK 186 (726)
T ss_pred hhh-hHHHHHHHHHHHHHHh----CCCccHHHHHHH-HHHHHHHH----cCCCcc---CcCCCCCCCcCCccccccCccc
Confidence 997 77 5788899999887 457999999999 99999999 999999 99999999754322
Q ss_pred -------------------------------cccCCCCCCCCChHHHHHHHHhCCCCccchhhhh--------ccccccc
Q 043653 150 -------------------------------SLAENLPSFTDGLDKLISTFATKGLNAKYSVALS--------TQCAFFR 190 (212)
Q Consensus 150 -------------------------------~~a~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs--------ahC~~f~ 190 (212)
++++.+|+|..++.+|++.|.+||||.+|||||+ +||..|.
T Consensus 187 ~~l~~~~r~~~~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~ 266 (726)
T PRK15061 187 EWLGGDERYSGERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDA 266 (726)
T ss_pred cccccccccccccccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCcc
Confidence 2222489999999999999999999999999995 9999999
Q ss_pred ccccCCCCCCCHHHHHHHH
Q 043653 191 ERIYNNQNNIDAGFASTRS 209 (212)
Q Consensus 191 ~Rly~dp~~~d~~~~~~L~ 209 (212)
+|+-.|| .+++.|+..|.
T Consensus 267 ~rlgpdP-~~a~~~~qgLg 284 (726)
T PRK15061 267 SHVGPEP-EAAPIEEQGLG 284 (726)
T ss_pred cccCCCC-CcCHHHHHhcc
Confidence 9997799 99999998884
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=99.57 E-value=1.2e-14 Score=129.94 Aligned_cols=151 Identities=15% Similarity=0.065 Sum_probs=111.3
Q ss_pred HHHHHHHHHHhhc------CCCcc-ccccCCCCCcchhccCCCCCC--C-chhHHHHHHHHHhhh-hCCC-ccchhhHHH
Q 043653 45 TIRTGIRNAVSRE------GCDAS-ILLDDSSSIDSQKNALPNFKS--A-RGFEAIDSVKSQLES-VCPG-VLSSLIFYK 112 (212)
Q Consensus 45 iVr~~v~~~~~~d------GcDaS-ILl~~t~~~~~E~~a~~N~~~--l-rg~~vI~~iK~~le~-~cpg-~VScADila 112 (212)
.||.+-+.+-.-+ |+.|+ |.+. .|++.+.|. + | +.+.+++.||++.-. .-++ .||+||+|+
T Consensus 33 lvrlAWhsAgTyr~sd~rGGaNGariRl~------pe~~w~~N~-~~~L~~~~~~Le~ik~~~~~~~~~~~~vS~ADLiv 105 (297)
T cd08200 33 LVSTAWASASTFRNSDKRGGANGARIRLA------PQKDWEVNE-PEELAKVLAVLEGIQKEFNESQSGGKKVSLADLIV 105 (297)
T ss_pred HHHHhhhccccccCCCCCCCCCcccccCc------cccCcCccC-cHHHHHHHHHHHHHHHHhcccccCCccccHHHHHH
Confidence 6666666654443 89998 6664 688999997 5 6 478899999988732 1122 699999999
Q ss_pred hhhhhhhHHHhhhhhcC-----cceeeceeecCCcCCCCcccccc--C-CCCCCCC------------ChHHHHHHHHhC
Q 043653 113 INKIRDMVLTEIAISRC-----RWWTILTVKLGRRDSTTASRSLA--E-NLPSFTD------------GLDKLISTFATK 172 (212)
Q Consensus 113 l~Aardav~~~~~~~GG-----P~~~~~~v~lGRrD~~~s~~~~a--~-~LP~p~~------------~~~~l~~~F~~~ 172 (212)
| |+..||+. +|| |.+ ++..||.|...+..... . .+|.+.. ..+.|++.|.++
T Consensus 106 L-aG~vAiE~----agg~ag~~p~I---pf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~Lrd~f~rl 177 (297)
T cd08200 106 L-GGCAAVEK----AAKDAGVDIKV---PFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEMLVDKAQLL 177 (297)
T ss_pred H-HhHHHHHH----HHhccCCCcee---ccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHHHHHHHhC
Confidence 9 99999999 999 999 99999999987533211 1 3453322 347899999999
Q ss_pred CCCccchhhhh-cc-----ccc--ccccccCCCCCCCHHHHHHHHh
Q 043653 173 GLNAKYSVALS-TQ-----CAF--FRERIYNNQNNIDAGFASTRSR 210 (212)
Q Consensus 173 Gl~~~dlVaLs-ah-----C~~--f~~Rly~dp~~~d~~~~~~L~~ 210 (212)
|||++|||||+ +| |.. +..-+..+|.++|.+|...|..
T Consensus 178 glsd~EmvaL~Gg~r~lG~~~~~s~~G~wT~~p~~f~N~fF~nLLd 223 (297)
T cd08200 178 TLTAPEMTVLVGGLRVLGANYGGSKHGVFTDRPGVLTNDFFVNLLD 223 (297)
T ss_pred CCChHHHhheecchhhcccCCCCCCCCCCcCCCCccccHHHHHHhc
Confidence 99999999999 54 432 1111223788899999988863
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.35 E-value=2.9e-12 Score=125.90 Aligned_cols=135 Identities=16% Similarity=0.062 Sum_probs=98.5
Q ss_pred CCCcc-ccccCCCCCcchhccCCC--CCCC-chhHHHHHHHHHhhhhCCCccchhhHHHhhhhhhhHHHhhhhh---cCc
Q 043653 58 GCDAS-ILLDDSSSIDSQKNALPN--FKSA-RGFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAIS---RCR 130 (212)
Q Consensus 58 GcDaS-ILl~~t~~~~~E~~a~~N--~~~l-rg~~vI~~iK~~le~~cpg~VScADilal~Aardav~~~~~~~---GGP 130 (212)
|+.|+ |.+. .|++.+.| . +| +.+++++.||++... +.||.||+|+| |+..||+. + |||
T Consensus 470 GaNGariRl~------pe~~w~~N~p~-gL~~vl~~Le~Ik~~f~~---~~vS~ADLivL-aG~vAVE~----aa~~gG~ 534 (716)
T TIGR00198 470 GANGARIRLE------PQKNWPVNEPT-RLAKVLAVLEKIQAEFAK---GPVSLADLIVL-GGGAAVEK----AALDAGI 534 (716)
T ss_pred CCCcceeecc------hhcCcccCCHH-HHHHHHHHHHHHHHHcCC---CcccHHHHHHH-HHHHHHHH----HHHhCCC
Confidence 77777 6553 68999988 5 55 577889999988732 27999999999 99999999 6 898
Q ss_pred --ceeeceeecCCcCCCCccccccCCC---CCC------------CCChHHHHHHHHhCCCCccchhhhh-c-----ccc
Q 043653 131 --WWTILTVKLGRRDSTTASRSLAENL---PSF------------TDGLDKLISTFATKGLNAKYSVALS-T-----QCA 187 (212)
Q Consensus 131 --~~~~~~v~lGRrD~~~s~~~~a~~L---P~p------------~~~~~~l~~~F~~~Gl~~~dlVaLs-a-----hC~ 187 (212)
.+ ++..||.|.+.......... |.+ ......|++.|..+|||+.|||||+ + +|+
T Consensus 535 ~~~V---pf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~ 611 (716)
T TIGR00198 535 SVNV---PFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYAVTPEELLLDKAQLLTLTAPEMTVLIGGMRVLGANH 611 (716)
T ss_pred Cccc---CcCCCCCccccCCCCccccccCCCCCcccchhccccccCCHHHHHHHHHHhCCCChHHHHheecchhhccccC
Confidence 57 88899999976532111111 211 2235678999999999999999999 3 354
Q ss_pred cc--cccccCCCCCCCHHHHHHHHh
Q 043653 188 FF--RERIYNNQNNIDAGFASTRSR 210 (212)
Q Consensus 188 ~f--~~Rly~dp~~~d~~~~~~L~~ 210 (212)
.- ..-+..+|.+++.+|...|..
T Consensus 612 ~~s~~G~~T~~p~~f~NdfF~~LLd 636 (716)
T TIGR00198 612 GGSKHGVFTDRVGVLSNDFFVNLLD 636 (716)
T ss_pred CCCCCCCCcCCCCccccHHHHHHhc
Confidence 31 111223788899999988854
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.34 E-value=4.3e-12 Score=124.39 Aligned_cols=138 Identities=13% Similarity=0.045 Sum_probs=101.8
Q ss_pred CCCcc-ccccCCCCCcchhccCCCCC-CC-chhHHHHHHHHHhhhhC--CCccchhhHHHhhhhhhhHHHhhhhh---cC
Q 043653 58 GCDAS-ILLDDSSSIDSQKNALPNFK-SA-RGFEAIDSVKSQLESVC--PGVLSSLIFYKINKIRDMVLTEIAIS---RC 129 (212)
Q Consensus 58 GcDaS-ILl~~t~~~~~E~~a~~N~~-~l-rg~~vI~~iK~~le~~c--pg~VScADilal~Aardav~~~~~~~---GG 129 (212)
|+.|+ |.+. .|++...|.. +| +.+++++.||++....- ...||.||+|+| |+..||+. + ||
T Consensus 477 GaNGarIRl~------Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~~~~~~~~vS~ADLivL-aG~vAIE~----aa~~aG 545 (726)
T PRK15061 477 GANGARIRLA------PQKDWEVNEPAQLAKVLAVLEGIQAEFNAAQSGGKKVSLADLIVL-GGNAAVEQ----AAKAAG 545 (726)
T ss_pred CCCccceecc------cccCccccCHHHHHHHHHHHHHHHHHHhhccCCCCceeHHHHHHH-HHHHHHHH----HHHhCC
Confidence 77777 6664 5888888851 34 47889999999885321 136999999999 99999999 6 68
Q ss_pred --cceeeceeecCCcCCCCcccccc--C-CCCCCC------------CChHHHHHHHHhCCCCccchhhhh-cc-----c
Q 043653 130 --RWWTILTVKLGRRDSTTASRSLA--E-NLPSFT------------DGLDKLISTFATKGLNAKYSVALS-TQ-----C 186 (212)
Q Consensus 130 --P~~~~~~v~lGRrD~~~s~~~~a--~-~LP~p~------------~~~~~l~~~F~~~Gl~~~dlVaLs-ah-----C 186 (212)
|.+ ++..||.|.+....... . .+|..+ ..-..|++.|.++|||+.|||||+ +| |
T Consensus 546 ~~~~V---Pf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~~~~~~~e~~L~d~a~~lglt~~EmvaL~Gg~r~Lg~~ 622 (726)
T PRK15061 546 HDVTV---PFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKKGYSVSPEELLVDKAQLLTLTAPEMTVLVGGLRVLGAN 622 (726)
T ss_pred CCccc---CcCCCCCCcccCCCCcccccccCCCCccccccccccCCCCHHHHHHHHHHhCCCChHHHhheecchhhcccC
Confidence 999 99999999977533221 1 456543 123889999999999999999999 44 2
Q ss_pred cc--ccccccCCCCCCCHHHHHHHH
Q 043653 187 AF--FRERIYNNQNNIDAGFASTRS 209 (212)
Q Consensus 187 ~~--f~~Rly~dp~~~d~~~~~~L~ 209 (212)
.. +..-+..+|.+++.+|...|.
T Consensus 623 ~~~S~~G~~T~~p~~fsNdfFvnLL 647 (726)
T PRK15061 623 YGGSKHGVFTDRPGVLTNDFFVNLL 647 (726)
T ss_pred CCCCCCCCCcCCCCccccHHHHHHh
Confidence 21 111122368789999998886
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=98.86 E-value=9.2e-09 Score=98.26 Aligned_cols=100 Identities=14% Similarity=0.058 Sum_probs=87.7
Q ss_pred CcchhccCCCCCCC-chhHHHHHHHHHhhhhCCCccchhhHHHhhhhhhhHHHhhhhhcCcceeeceeecCCcCCCCccc
Q 043653 71 IDSQKNALPNFKSA-RGFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAISRCRWWTILTVKLGRRDSTTASR 149 (212)
Q Consensus 71 ~~~E~~a~~N~~~l-rg~~vI~~iK~~le~~cpg~VScADilal~Aardav~~~~~~~GGP~~~~~~v~lGRrD~~~s~~ 149 (212)
|..+.+.+.|. +| +++.++-.||++. +..+|+||++.| ++..|++. +|++.+ .+..||.|--.+..
T Consensus 125 FaPlnSWPDN~-nLDKarRLLWPIKkKY----G~kiSWaDL~iL-aGnvAlEs----MGfktf---GFa~GR~D~wepd~ 191 (730)
T COG0376 125 FAPLNSWPDNA-NLDKARRLLWPIKKKY----GRKISWADLIIL-AGNVALES----MGFKTF---GFAGGREDVWEPDE 191 (730)
T ss_pred cccccCCCccc-chHHHHHHhhhHhHhh----cccccHhHhhhh-hchhhhhh----cCCccc---cccCCCCcCCCCcc
Confidence 55677778888 55 6899999999887 458999999999 99999999 999999 99999998755544
Q ss_pred --------------------------------------cccCCCCCCCCChHHHHHHHHhCCCCccchhhhh
Q 043653 150 --------------------------------------SLAENLPSFTDGLDKLISTFATKGLNAKYSVALS 183 (212)
Q Consensus 150 --------------------------------------~~a~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs 183 (212)
++++..|+|-.+..+++..|++|++|.+|.|||.
T Consensus 192 dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALi 263 (730)
T COG0376 192 DVYWGSEKTWLGDERYSGDRDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALI 263 (730)
T ss_pred ccccCccccccccccccccccccCchhhheeeeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhh
Confidence 5555689999999999999999999999999999
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=85.95 E-value=1.6 Score=43.02 Aligned_cols=103 Identities=15% Similarity=0.083 Sum_probs=63.4
Q ss_pred hhccCCCCC-CC-chhHHHHHHHHHhhhhCCCccchhhHHHhhhhhhhHHHhhhhhcCcceeeceeecCCcCCCCccccc
Q 043653 74 QKNALPNFK-SA-RGFEAIDSVKSQLESVCPGVLSSLIFYKINKIRDMVLTEIAISRCRWWTILTVKLGRRDSTTASRSL 151 (212)
Q Consensus 74 E~~a~~N~~-~l-rg~~vI~~iK~~le~~cpg~VScADilal~Aardav~~~~~~~GGP~~~~~~v~lGRrD~~~s~~~~ 151 (212)
.++...|.- -| +-+.+++.|.+... ..||.||+|.| ++-.+|+..-. .+|-.++ -++..||.|........
T Consensus 498 qkdWevN~P~~l~kvl~~le~iq~~fn----kkvSlADlIVL-~G~a~ie~AAk-~aG~~v~-VPF~pGR~DA~qeqtDv 570 (730)
T COG0376 498 QKDWEVNQPAELAKVLAVLEKIQKEFN----KKVSLADLIVL-GGNAAVEKAAK-AAGFSVT-VPFAPGRTDASQEQTDV 570 (730)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHhc----CccchhHheee-cchHHHHHHHH-hcCceee-eccCCCCcccchhhcch
Confidence 455555531 12 34677777777765 46999999999 99999988421 3455540 05567999986643221
Q ss_pred cC-C-C-CCC------------CCChHHHHHHHHhCCCCccchhhhh
Q 043653 152 AE-N-L-PSF------------TDGLDKLISTFATKGLNAKYSVALS 183 (212)
Q Consensus 152 a~-~-L-P~p------------~~~~~~l~~~F~~~Gl~~~dlVaLs 183 (212)
.. . | |-. -..-.-|+++=+-.+|+.-||.+|.
T Consensus 571 ~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkAqlL~LtapemtVLi 617 (730)
T COG0376 571 ESFAVLEPIADGFRNYVKKDYVLTPEELLVDKAQLLTLTAPEMTVLI 617 (730)
T ss_pred hhhhcccccchhhhhhccCCCcCCHHHHHHHHHHHhccCCccceEEE
Confidence 11 1 1 211 1122345666677899999999998
No 19
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=59.33 E-value=29 Score=31.48 Aligned_cols=102 Identities=16% Similarity=0.241 Sum_probs=65.9
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCccccccCCCCCcchhccCCCCCCCchhHHHHHHHHHhhhhCCCccchhhHHHhhhhh
Q 043653 38 TCPNALNTIRTGIRNAVSREGCDASILLDDSSSIDSQKNALPNFKSARGFEAIDSVKSQLESVCPGVLSSLIFYKINKIR 117 (212)
Q Consensus 38 sCP~ae~iVr~~v~~~~~~dGcDaSILl~~t~~~~~E~~a~~N~~~lrg~~vI~~iK~~le~~cpg~VScADilal~Aar 117 (212)
+.-..-+-+|+.|++..++.|+|--|++...+ .|.-.+..- +. .+..+.+.+.++.--+. ++.+-+.|. ||-
T Consensus 126 ~~~~~~e~~~~DI~~f~~~~~~d~vVvvn~as---TE~~~~~~~-~~--~~t~~~l~~al~~~~~~-~~aS~~YA~-AAl 197 (295)
T PF07994_consen 126 SKREQVEQIREDIRDFKKENGLDRVVVVNVAS---TERYIPVIP-GV--HDTLEALEKALDENDPE-ISASMLYAY-AAL 197 (295)
T ss_dssp THHHHHHHHHHHHHHHHHHTT-SCEEEEE-SS---CC-S---CC-CC--CSSHHHHHHHHHTT-TT-HHHHHHHHH-HHH
T ss_pred chHHHHHHHHHHHHHHHHHhCCCcEEEEECCC---CCCCCCCCc-cc--cCCHHHHHHHhhcCCCc-CChHHHHHH-HHH
Confidence 33444466889999999999999999987554 344221111 11 23456666777665444 888888888 433
Q ss_pred hhHHHhhhhhcCcceeeceeecCCcCCCCccccccCCCCCCCCChHHHHHHHHhCCCC
Q 043653 118 DMVLTEIAISRCRWWTILTVKLGRRDSTTASRSLAENLPSFTDGLDKLISTFATKGLN 175 (212)
Q Consensus 118 dav~~~~~~~GGP~~~~~~v~lGRrD~~~s~~~~a~~LP~p~~~~~~l~~~F~~~Gl~ 175 (212)
. .|.|++ . -.|++..+...+.+.|+++|+-
T Consensus 198 ----~----~g~~fv------------------N--~tP~~~a~~P~l~ela~~~gvp 227 (295)
T PF07994_consen 198 ----E----AGVPFV------------------N--GTPSNIADDPALVELAEEKGVP 227 (295)
T ss_dssp ----H----TTEEEE------------------E---SSSTTTTSHHHHHHHHHHTEE
T ss_pred ----H----CCCCeE------------------e--ccCccccCCHHHHHHHHHcCCC
Confidence 3 577776 1 3688888889999999999864
No 20
>PLN02438 inositol-3-phosphate synthase
Probab=53.37 E-value=97 Score=30.48 Aligned_cols=65 Identities=14% Similarity=0.221 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhcCCCccccccCCCCCcchhccCCCCCCCchhHHHHHHHHHhhhhCCCccchhhHHHhhhh
Q 043653 44 NTIRTGIRNAVSREGCDASILLDDSSSIDSQKNALPNFKSARGFEAIDSVKSQLESVCPGVLSSLIFYKINKI 116 (212)
Q Consensus 44 ~iVr~~v~~~~~~dGcDaSILl~~t~~~~~E~~a~~N~~~lrg~~vI~~iK~~le~~cpg~VScADilal~Aa 116 (212)
+-||+.+++.-+++|+|--|++...+ .|+...--. + -.+..+.+.++++..-+ .||.+-+.|. ||
T Consensus 207 e~ir~DIr~Fk~~n~ld~vVVlwtAs---TEr~~~~~~-~--~~~t~~~l~~ai~~~~~-eispS~~YA~-AA 271 (510)
T PLN02438 207 DQIRKDIREFKEKNKVDKVVVLWTAN---TERYSNVVV-G--LNDTMENLLASIEKDEA-EISPSTLYAL-AC 271 (510)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECCC---CCCCCcCCC-c--ccCCHHHHHHHHhcCCC-cCChHHHHHH-HH
Confidence 57788888888888999999987543 564332111 1 13566677777776544 6999999998 54
No 21
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=50.77 E-value=8.2 Score=29.35 Aligned_cols=6 Identities=50% Similarity=0.296 Sum_probs=4.0
Q ss_pred CCcccc
Q 043653 1 MASLSQ 6 (212)
Q Consensus 1 m~~~~~ 6 (212)
|++++.
T Consensus 1 MaSK~~ 6 (95)
T PF07172_consen 1 MASKAF 6 (95)
T ss_pred CchhHH
Confidence 887653
No 22
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=37.07 E-value=1e+02 Score=28.23 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=59.8
Q ss_pred CCCccccccCCCC---Ccchhc--cCCC-CCCC-------chhHHHHHHHHHhhhhCC-----CccchhhHHHhh-hhhh
Q 043653 58 GCDASILLDDSSS---IDSQKN--ALPN-FKSA-------RGFEAIDSVKSQLESVCP-----GVLSSLIFYKIN-KIRD 118 (212)
Q Consensus 58 GcDaSILl~~t~~---~~~E~~--a~~N-~~~l-------rg~~vI~~iK~~le~~cp-----g~VScADilal~-Aard 118 (212)
|.||=|+.+.+.+ ...|.. ...| .+|| +++.+|..+.+.++..+| |+-|+-|.+-+. |+.+
T Consensus 186 g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~ 265 (310)
T COG0167 186 GADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGAS 265 (310)
T ss_pred CCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCc
Confidence 9999999986652 122221 1122 1233 367888999999887666 566677776653 4455
Q ss_pred hHHHhh-hhhcCcceeeceeecCCcCCCCccccccCCCCCCCCChHHHHHHHHhCCCC-ccchhhh
Q 043653 119 MVLTEI-AISRCRWWTILTVKLGRRDSTTASRSLAENLPSFTDGLDKLISTFATKGLN-AKYSVAL 182 (212)
Q Consensus 119 av~~~~-~~~GGP~~~~~~v~lGRrD~~~s~~~~a~~LP~p~~~~~~l~~~F~~~Gl~-~~dlVaL 182 (212)
+|+.+. .+-.||.| . ..=.++|.++..++|++ .+|++..
T Consensus 266 ~vQv~Tal~~~Gp~i----------------~---------~~I~~~l~~~l~~~g~~si~d~iG~ 306 (310)
T COG0167 266 AVQVGTALIYKGPGI----------------V---------KEIIKGLARWLEEKGFESIQDIIGS 306 (310)
T ss_pred hheeeeeeeeeCchH----------------H---------HHHHHHHHHHHHHcCCCCHHHHhch
Confidence 555421 11124444 1 11256778888899998 7888764
No 23
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=27.91 E-value=1.5e+02 Score=26.41 Aligned_cols=46 Identities=13% Similarity=-0.088 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhhh-----hCCCccchhhHHHhh-hhhhhHHHhhhhhc-Ccce
Q 043653 87 FEAIDSVKSQLES-----VCPGVLSSLIFYKIN-KIRDMVLTEIAISR-CRWW 132 (212)
Q Consensus 87 ~~vI~~iK~~le~-----~cpg~VScADilal~-Aardav~~~~~~~G-GP~~ 132 (212)
++.|..+++.++. .|.|+-|..|++.+. ++.++|..+-.... ||.+
T Consensus 239 l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~~ 291 (299)
T cd02940 239 LRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTI 291 (299)
T ss_pred HHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecccCCcH
Confidence 7889999988843 355777888888763 56677776422222 5554
No 24
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=25.72 E-value=43 Score=24.64 Aligned_cols=22 Identities=32% Similarity=0.295 Sum_probs=16.5
Q ss_pred hHHHHHHHHhCCCCccchhhhh
Q 043653 162 LDKLISTFATKGLNAKYSVALS 183 (212)
Q Consensus 162 ~~~l~~~F~~~Gl~~~dlVaLs 183 (212)
-+.|-..|.+.||+..||-.++
T Consensus 10 GDtLs~iF~~~gls~~dl~~v~ 31 (85)
T PF04225_consen 10 GDTLSTIFRRAGLSASDLYAVL 31 (85)
T ss_dssp T--HHHHHHHTT--HHHHHHHH
T ss_pred CCcHHHHHHHcCCCHHHHHHHH
Confidence 4678899999999999999988
No 25
>KOG3803 consensus Transcription factor containing C2HC type Zn finger [Transcription]
Probab=23.25 E-value=49 Score=33.64 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=23.0
Q ss_pred CCChhHHHHHHHHHHHHHhhc-----CCCccccccC
Q 043653 37 ATCPNALNTIRTGIRNAVSRE-----GCDASILLDD 67 (212)
Q Consensus 37 ~sCP~ae~iVr~~v~~~~~~d-----GcDaSILl~~ 67 (212)
+-||-+++++|.-+...-..- |||||=-+..
T Consensus 670 sgcpladks~Rslma~~sqeLkCPTPGCDGSGHiTG 705 (968)
T KOG3803|consen 670 SGCPLADKSLRSLMAAGSQELKCPTPGCDGSGHITG 705 (968)
T ss_pred cCCchhHHHHHHHHhcccccccCCCCCCCCCCcccc
Confidence 369999999998776542222 9999988753
No 26
>PF01756 ACOX: Acyl-CoA oxidase; InterPro: IPR002655 Acyl-CoA oxidase (ACO) acts on CoA derivatives of fatty acids with chain lengths from 8 to 18. It catalyses the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids []. Acyl-CoA oxidase is a homodimer and the polypeptide chain of the subunit is folded into the N-terminal alpha-domain, beta-domain, and C-terminal alpha-domain []. Functional differences between the peroxisomal acyl-CoA oxidases and the mitochondrial acyl-CoA dehydrogenases are attributed to structural differences in the FAD environments []. Experimental data indicate that, in the pumpkin, the expression pattern of ACOX is very similar to that of the glyoxysomal enzyme 3-ketoacyl-CoA thiolase []. In humans, defects in ACOX1 are the cause of pseudoneonatal adrenoleukodystrophy, also known as peroxisomal acyl-CoA oxidase deficiency. Pseudo-NALD is a peroxisomal single-enzyme disorder. Clinical features include mental retardation, leukodystrophy, seizures, mild hepatomegaly and hearing deficit. Pseudo-NALD is characterised by increased plasma levels of very-long chain fatty acids due to a decrease in, or absence of, peroxisome acyl-CoA oxidase activity, despite the peroxisomes being intact and functioning. This entry represents the Acyl-CoA oxidase C-terminal.; GO: 0003997 acyl-CoA oxidase activity, 0006635 fatty acid beta-oxidation, 0055114 oxidation-reduction process, 0005777 peroxisome; PDB: 2FON_A 1IS2_B 2DDH_A 1W07_B.
Probab=22.98 E-value=22 Score=29.41 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=8.2
Q ss_pred cCcceeeceeecCCcCCCC
Q 043653 128 RCRWWTILTVKLGRRDSTT 146 (212)
Q Consensus 128 GGP~~~~~~v~lGRrD~~~ 146 (212)
|=|.+ ++.-++||.||.+
T Consensus 137 ~~~D~-~L~S~iG~~DG~v 154 (187)
T PF01756_consen 137 DFPDF-FLNSPIGRYDGDV 154 (187)
T ss_dssp ---HH-HHT-STT-TT--H
T ss_pred CCCHH-HHcChhccccchH
Confidence 33665 3477999999975
Done!