Query 043654
Match_columns 390
No_of_seqs 320 out of 2338
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:03:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043654.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043654hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13947 GUB_WAK_bind: Wall-as 99.8 1.3E-18 2.8E-23 139.9 9.3 96 27-130 2-106 (106)
2 KOG4628 Predicted E3 ubiquitin 99.7 3.7E-18 8E-23 160.3 8.2 76 297-375 207-283 (348)
3 PF13639 zf-RING_2: Ring finge 99.6 1.3E-15 2.7E-20 102.0 1.8 44 322-366 1-44 (44)
4 PF14380 WAK_assoc: Wall-assoc 99.5 2.6E-14 5.7E-19 112.0 7.3 87 140-232 1-94 (94)
5 PHA02929 N1R/p28-like protein; 99.3 6.8E-13 1.5E-17 119.8 4.7 75 296-370 149-227 (238)
6 PF12678 zf-rbx1: RING-H2 zinc 99.3 2E-12 4.4E-17 96.0 4.1 45 321-366 19-73 (73)
7 COG5540 RING-finger-containing 99.2 4.9E-12 1.1E-16 114.5 3.8 52 319-371 321-373 (374)
8 COG5243 HRD1 HRD ubiquitin lig 99.0 1.5E-10 3.2E-15 107.7 3.4 51 318-369 284-344 (491)
9 PLN03208 E3 ubiquitin-protein 99.0 4.3E-10 9.2E-15 97.5 5.4 55 318-376 15-85 (193)
10 cd00162 RING RING-finger (Real 99.0 6E-10 1.3E-14 74.3 3.7 44 323-369 1-45 (45)
11 PF13923 zf-C3HC4_2: Zinc fing 98.9 5.8E-10 1.3E-14 72.3 3.2 39 324-365 1-39 (39)
12 PF13920 zf-C3HC4_3: Zinc fing 98.9 8.6E-10 1.9E-14 75.7 3.2 46 321-370 2-48 (50)
13 KOG0320 Predicted E3 ubiquitin 98.9 1.6E-09 3.5E-14 91.4 4.6 54 318-373 128-181 (187)
14 KOG0317 Predicted E3 ubiquitin 98.9 9.6E-10 2.1E-14 99.8 3.0 50 320-373 238-287 (293)
15 PF12861 zf-Apc11: Anaphase-pr 98.9 1.4E-09 3.1E-14 81.3 3.4 51 320-370 20-82 (85)
16 KOG0823 Predicted E3 ubiquitin 98.8 2.9E-09 6.4E-14 93.9 3.8 56 318-377 44-102 (230)
17 PHA02926 zinc finger-like prot 98.8 3.7E-09 8.1E-14 92.5 3.5 54 318-371 167-231 (242)
18 PF14634 zf-RING_5: zinc-RING 98.8 6.2E-09 1.3E-13 69.4 3.4 44 323-367 1-44 (44)
19 PF00097 zf-C3HC4: Zinc finger 98.7 8.8E-09 1.9E-13 67.6 2.5 39 324-365 1-41 (41)
20 PF15227 zf-C3HC4_4: zinc fing 98.7 9.7E-09 2.1E-13 67.5 2.7 38 324-365 1-42 (42)
21 KOG0802 E3 ubiquitin ligase [P 98.7 7.6E-09 1.7E-13 106.3 2.2 53 319-372 289-343 (543)
22 smart00184 RING Ring finger. E 98.6 2.5E-08 5.5E-13 63.9 3.2 38 324-365 1-39 (39)
23 smart00504 Ubox Modified RING 98.6 5.8E-08 1.3E-12 70.0 4.3 49 322-374 2-50 (63)
24 COG5194 APC11 Component of SCF 98.5 7E-08 1.5E-12 70.1 3.0 49 322-370 21-81 (88)
25 KOG1493 Anaphase-promoting com 98.4 6E-08 1.3E-12 69.9 0.6 51 320-370 19-81 (84)
26 KOG1734 Predicted RING-contain 98.4 1.2E-07 2.7E-12 84.9 1.2 53 318-371 221-282 (328)
27 smart00744 RINGv The RING-vari 98.3 4.8E-07 1E-11 61.5 3.1 42 323-366 1-49 (49)
28 PF13445 zf-RING_UBOX: RING-ty 98.3 4.7E-07 1E-11 59.5 2.7 38 324-363 1-43 (43)
29 TIGR00599 rad18 DNA repair pro 98.3 4.8E-07 1.1E-11 87.9 3.9 50 318-371 23-72 (397)
30 KOG0828 Predicted E3 ubiquitin 98.3 3.6E-07 7.7E-12 88.4 2.1 51 320-371 570-635 (636)
31 COG5574 PEX10 RING-finger-cont 98.1 1E-06 2.2E-11 79.4 2.4 50 320-373 214-265 (271)
32 KOG2164 Predicted E3 ubiquitin 98.1 7.5E-07 1.6E-11 87.2 1.4 50 321-374 186-240 (513)
33 PF11793 FANCL_C: FANCL C-term 98.1 7.2E-07 1.6E-11 65.6 0.2 50 321-370 2-66 (70)
34 KOG2930 SCF ubiquitin ligase, 98.0 3.2E-06 6.9E-11 64.8 2.0 49 321-369 46-107 (114)
35 KOG0804 Cytoplasmic Zn-finger 98.0 2.4E-06 5.1E-11 82.1 1.4 50 318-370 172-222 (493)
36 PF04564 U-box: U-box domain; 97.9 4.3E-06 9.3E-11 62.1 2.0 52 321-376 4-56 (73)
37 TIGR00570 cdk7 CDK-activating 97.8 1.5E-05 3.2E-10 74.6 4.1 55 321-376 3-60 (309)
38 COG5219 Uncharacterized conser 97.8 5.9E-06 1.3E-10 85.6 0.2 53 318-370 1466-1523(1525)
39 KOG4265 Predicted E3 ubiquitin 97.7 2.2E-05 4.9E-10 73.9 3.0 53 319-375 288-341 (349)
40 KOG0287 Postreplication repair 97.6 2.3E-05 5.1E-10 72.7 1.5 47 319-369 21-67 (442)
41 KOG0827 Predicted E3 ubiquitin 97.6 2.7E-05 5.7E-10 73.7 1.6 44 322-366 5-52 (465)
42 KOG1645 RING-finger-containing 97.6 1.7E-05 3.7E-10 75.5 0.3 53 320-372 3-58 (463)
43 KOG1039 Predicted E3 ubiquitin 97.6 5.9E-05 1.3E-09 72.1 3.9 56 319-374 159-225 (344)
44 COG5432 RAD18 RING-finger-cont 97.6 3.8E-05 8.3E-10 69.9 2.4 46 319-368 23-68 (391)
45 KOG2177 Predicted E3 ubiquitin 97.6 2.8E-05 6.2E-10 73.8 1.7 45 318-366 10-54 (386)
46 PF14835 zf-RING_6: zf-RING of 97.4 3E-05 6.4E-10 54.7 0.0 47 321-372 7-53 (65)
47 KOG3970 Predicted E3 ubiquitin 97.4 0.00011 2.5E-09 64.4 3.1 56 318-375 47-110 (299)
48 KOG4172 Predicted E3 ubiquitin 97.3 5.4E-05 1.2E-09 51.1 0.0 46 321-370 7-54 (62)
49 KOG0825 PHD Zn-finger protein 97.3 0.00012 2.5E-09 75.0 2.3 52 319-371 121-172 (1134)
50 KOG4445 Uncharacterized conser 97.2 0.00011 2.4E-09 67.2 0.4 51 320-371 114-187 (368)
51 KOG0311 Predicted E3 ubiquitin 97.1 6.8E-05 1.5E-09 70.3 -1.7 52 318-372 40-92 (381)
52 KOG1941 Acetylcholine receptor 96.8 0.00058 1.3E-08 64.8 2.1 46 321-367 365-413 (518)
53 KOG1785 Tyrosine kinase negati 96.8 0.00043 9.3E-09 65.8 0.9 45 321-369 369-415 (563)
54 PF11789 zf-Nse: Zinc-finger o 96.8 0.00083 1.8E-08 47.1 2.0 42 320-364 10-53 (57)
55 KOG0824 Predicted E3 ubiquitin 96.7 0.00094 2E-08 61.5 2.4 49 320-372 6-55 (324)
56 KOG0801 Predicted E3 ubiquitin 96.7 0.00056 1.2E-08 57.1 0.8 41 306-349 164-204 (205)
57 KOG0297 TNF receptor-associate 96.6 0.0012 2.7E-08 65.1 2.5 56 318-376 18-73 (391)
58 PF05883 Baculo_RING: Baculovi 96.6 0.00099 2.1E-08 54.5 1.4 39 321-360 26-70 (134)
59 KOG0978 E3 ubiquitin ligase in 96.5 0.00086 1.9E-08 69.3 0.9 49 320-372 642-691 (698)
60 KOG4692 Predicted E3 ubiquitin 96.4 0.0031 6.6E-08 59.3 3.8 51 317-371 418-468 (489)
61 PF12906 RINGv: RING-variant d 96.3 0.0028 6E-08 42.6 2.1 40 324-365 1-47 (47)
62 PF14570 zf-RING_4: RING/Ubox 96.2 0.0037 8.1E-08 41.8 2.3 45 324-369 1-47 (48)
63 KOG4159 Predicted E3 ubiquitin 96.2 0.003 6.4E-08 61.9 2.6 51 318-372 81-131 (398)
64 KOG1952 Transcription factor N 96.2 0.004 8.7E-08 64.8 3.5 51 318-368 188-245 (950)
65 PHA02862 5L protein; Provision 96.0 0.0044 9.5E-08 51.0 2.4 45 321-370 2-53 (156)
66 KOG1002 Nucleotide excision re 96.0 0.0035 7.7E-08 61.8 1.9 58 318-379 533-595 (791)
67 KOG1428 Inhibitor of type V ad 95.8 0.0057 1.2E-07 66.7 2.8 53 318-371 3483-3545(3738)
68 PHA02825 LAP/PHD finger-like p 95.6 0.0098 2.1E-07 50.0 2.9 48 318-369 5-58 (162)
69 PF10367 Vps39_2: Vacuolar sor 95.3 0.0077 1.7E-07 48.0 1.3 34 318-353 75-108 (109)
70 KOG0826 Predicted E3 ubiquitin 95.1 0.03 6.6E-07 52.4 4.6 47 318-367 297-343 (357)
71 KOG3039 Uncharacterized conser 95.0 0.021 4.6E-07 51.2 3.3 57 320-376 220-276 (303)
72 KOG2879 Predicted E3 ubiquitin 94.8 0.026 5.7E-07 51.6 3.3 53 318-373 236-290 (298)
73 COG5152 Uncharacterized conser 94.6 0.014 3E-07 50.6 1.1 44 321-368 196-239 (259)
74 KOG2660 Locus-specific chromos 94.5 0.0098 2.1E-07 55.8 -0.1 51 319-372 13-63 (331)
75 PHA03096 p28-like protein; Pro 94.3 0.021 4.6E-07 53.5 1.7 48 322-369 179-236 (284)
76 KOG1940 Zn-finger protein [Gen 94.3 0.0097 2.1E-07 55.2 -0.7 53 322-376 159-212 (276)
77 PF08746 zf-RING-like: RING-li 94.3 0.022 4.7E-07 37.4 1.2 41 324-365 1-43 (43)
78 PF14569 zf-UDP: Zinc-binding 94.1 0.081 1.8E-06 38.8 3.9 64 319-382 7-74 (80)
79 PF14446 Prok-RING_1: Prokaryo 93.7 0.091 2E-06 36.0 3.3 35 320-354 4-38 (54)
80 PF14447 Prok-RING_4: Prokaryo 93.5 0.049 1.1E-06 37.4 1.8 47 321-373 7-53 (55)
81 KOG1571 Predicted E3 ubiquitin 93.5 0.054 1.2E-06 51.6 2.7 46 318-370 302-347 (355)
82 COG5236 Uncharacterized conser 92.9 0.17 3.7E-06 47.8 4.9 48 318-369 58-107 (493)
83 KOG1814 Predicted E3 ubiquitin 92.9 0.063 1.4E-06 51.9 2.2 48 320-368 183-238 (445)
84 PF04641 Rtf2: Rtf2 RING-finge 92.4 0.11 2.3E-06 48.6 2.9 58 318-376 110-167 (260)
85 KOG1813 Predicted E3 ubiquitin 92.3 0.061 1.3E-06 49.8 1.2 45 321-369 241-285 (313)
86 COG5175 MOT2 Transcriptional r 91.9 0.086 1.9E-06 49.5 1.8 58 318-376 11-70 (480)
87 KOG3268 Predicted E3 ubiquitin 91.3 0.13 2.8E-06 43.9 2.0 52 320-372 164-230 (234)
88 KOG0827 Predicted E3 ubiquitin 91.3 0.011 2.5E-07 56.3 -4.7 52 320-372 195-247 (465)
89 KOG4739 Uncharacterized protei 91.2 0.078 1.7E-06 47.9 0.6 44 323-370 5-48 (233)
90 PF07800 DUF1644: Protein of u 91.1 0.22 4.9E-06 42.0 3.2 33 321-356 2-46 (162)
91 PLN02189 cellulose synthase 91.0 0.3 6.5E-06 53.1 4.9 60 319-378 32-95 (1040)
92 KOG4185 Predicted E3 ubiquitin 90.7 0.17 3.7E-06 48.1 2.6 48 321-369 3-54 (296)
93 KOG2114 Vacuolar assembly/sort 90.7 0.11 2.5E-06 54.5 1.3 43 321-369 840-882 (933)
94 PLN02436 cellulose synthase A 89.6 0.47 1E-05 51.7 4.9 57 320-376 35-95 (1094)
95 KOG4275 Predicted E3 ubiquitin 88.5 0.11 2.4E-06 48.0 -0.6 42 321-370 300-342 (350)
96 COG5222 Uncharacterized conser 88.5 0.17 3.7E-06 46.8 0.6 44 321-367 274-318 (427)
97 KOG2034 Vacuolar sorting prote 88.2 0.23 5E-06 52.6 1.4 37 318-356 814-850 (911)
98 PF02439 Adeno_E3_CR2: Adenovi 87.2 0.95 2.1E-05 28.5 3.2 25 240-264 6-30 (38)
99 PLN02400 cellulose synthase 86.7 0.69 1.5E-05 50.6 4.0 59 320-378 35-97 (1085)
100 PLN02638 cellulose synthase A 86.2 1 2.2E-05 49.3 5.0 61 320-380 16-80 (1079)
101 KOG3053 Uncharacterized conser 86.2 0.31 6.7E-06 44.2 0.9 52 318-370 17-82 (293)
102 KOG3002 Zn finger protein [Gen 85.3 0.53 1.1E-05 44.6 2.1 45 319-371 46-92 (299)
103 KOG0309 Conserved WD40 repeat- 85.2 0.48 1E-05 49.3 1.8 22 343-364 1048-1069(1081)
104 KOG2932 E3 ubiquitin ligase in 85.1 0.35 7.6E-06 45.1 0.7 45 323-372 92-136 (389)
105 KOG3161 Predicted E3 ubiquitin 84.0 0.34 7.3E-06 49.5 0.1 45 321-368 11-55 (861)
106 KOG1001 Helicase-like transcri 83.6 0.45 9.8E-06 50.2 0.9 46 322-372 455-502 (674)
107 KOG3899 Uncharacterized conser 82.4 0.66 1.4E-05 42.9 1.3 30 343-372 325-367 (381)
108 KOG1100 Predicted E3 ubiquitin 81.8 0.74 1.6E-05 41.3 1.4 39 324-370 161-200 (207)
109 PF08693 SKG6: Transmembrane a 81.5 0.9 2E-05 29.1 1.3 22 243-264 16-37 (40)
110 PF03854 zf-P11: P-11 zinc fin 81.3 0.48 1E-05 31.4 0.0 29 343-371 18-47 (50)
111 PLN02915 cellulose synthase A 80.2 2.5 5.4E-05 46.3 4.9 57 320-376 14-74 (1044)
112 KOG0298 DEAD box-containing he 79.7 0.6 1.3E-05 51.5 0.2 46 320-368 1152-1197(1394)
113 PF10272 Tmpp129: Putative tra 78.7 1.5 3.3E-05 42.5 2.6 29 343-371 311-352 (358)
114 PF05290 Baculo_IE-1: Baculovi 78.1 1.4 3E-05 36.1 1.7 53 320-372 79-134 (140)
115 KOG1609 Protein involved in mR 77.2 1.6 3.4E-05 41.7 2.2 51 321-372 78-136 (323)
116 KOG0802 E3 ubiquitin ligase [P 76.3 1.4 2.9E-05 45.8 1.5 49 318-374 476-524 (543)
117 KOG3800 Predicted E3 ubiquitin 76.2 2.4 5.2E-05 39.4 2.9 53 323-375 2-56 (300)
118 PF13908 Shisa: Wnt and FGF in 75.7 3.8 8.3E-05 35.8 4.0 23 239-261 77-99 (179)
119 PF15102 TMEM154: TMEM154 prot 74.7 2.6 5.6E-05 35.3 2.5 7 350-356 128-134 (146)
120 KOG2817 Predicted E3 ubiquitin 71.9 3.1 6.7E-05 40.4 2.7 46 321-367 334-382 (394)
121 PHA03099 epidermal growth fact 71.3 9.3 0.0002 31.1 4.8 23 207-232 53-75 (139)
122 PF13901 DUF4206: Domain of un 70.2 3.5 7.6E-05 36.9 2.5 43 319-367 150-197 (202)
123 KOG4362 Transcriptional regula 69.4 1.3 2.9E-05 46.1 -0.4 50 321-374 21-73 (684)
124 COG5220 TFB3 Cdk activating ki 69.2 2.2 4.8E-05 38.5 0.9 48 320-367 9-61 (314)
125 KOG1812 Predicted E3 ubiquitin 69.0 1.9 4E-05 42.6 0.5 38 320-358 145-183 (384)
126 PF10571 UPF0547: Uncharacteri 67.1 3.2 6.8E-05 24.0 1.0 23 323-347 2-24 (26)
127 COG5183 SSM4 Protein involved 67.1 3.8 8.3E-05 43.3 2.3 51 319-369 10-65 (1175)
128 PF02891 zf-MIZ: MIZ/SP-RING z 66.3 6.8 0.00015 26.5 2.7 43 322-368 3-50 (50)
129 KOG4367 Predicted Zn-finger pr 64.6 3.3 7.1E-05 40.6 1.2 35 320-358 3-37 (699)
130 PF12191 stn_TNFRSF12A: Tumour 64.5 3.2 7E-05 33.6 1.0 11 225-235 63-74 (129)
131 PF01034 Syndecan: Syndecan do 64.3 2.3 5E-05 30.2 0.1 19 247-265 18-36 (64)
132 PF15050 SCIMP: SCIMP protein 63.9 7 0.00015 31.4 2.7 25 240-264 8-32 (133)
133 PF04478 Mid2: Mid2 like cell 63.6 3.2 7E-05 35.0 0.8 11 241-251 53-63 (154)
134 TIGR01478 STEVOR variant surfa 62.0 7.5 0.00016 36.2 3.0 14 251-264 270-283 (295)
135 PHA03164 hypothetical protein; 61.7 13 0.00027 27.3 3.4 41 224-264 35-83 (88)
136 smart00132 LIM Zinc-binding do 60.7 11 0.00023 23.1 2.8 37 323-369 1-37 (39)
137 smart00249 PHD PHD zinc finger 59.8 7.6 0.00017 24.8 2.0 31 323-354 1-31 (47)
138 PTZ00370 STEVOR; Provisional 59.3 8.3 0.00018 36.0 2.8 14 251-264 266-279 (296)
139 KOG3113 Uncharacterized conser 57.7 7.5 0.00016 35.5 2.2 56 319-376 109-164 (293)
140 PF05568 ASFV_J13L: African sw 56.7 11 0.00025 31.2 2.9 14 251-264 41-54 (189)
141 KOG1829 Uncharacterized conser 55.8 3.1 6.7E-05 42.9 -0.7 46 318-367 508-558 (580)
142 PF02038 ATP1G1_PLM_MAT8: ATP1 55.7 7.6 0.00016 26.2 1.4 23 244-266 17-39 (50)
143 PF13719 zinc_ribbon_5: zinc-r 55.3 7.4 0.00016 24.4 1.3 26 323-348 4-36 (37)
144 PF06024 DUF912: Nucleopolyhed 54.5 11 0.00023 29.7 2.4 7 257-263 79-85 (101)
145 KOG2066 Vacuolar assembly/sort 53.6 5.5 0.00012 42.1 0.7 8 60-67 85-92 (846)
146 PLN02195 cellulose synthase A 51.9 17 0.00036 39.9 4.0 51 320-370 5-59 (977)
147 KOG3842 Adaptor protein Pellin 51.8 17 0.00036 34.4 3.5 53 318-371 338-415 (429)
148 PTZ00087 thrombosponding-relat 51.7 18 0.00038 33.4 3.5 57 207-264 259-321 (340)
149 PF01363 FYVE: FYVE zinc finge 51.0 8 0.00017 27.8 1.1 37 319-355 7-43 (69)
150 TIGR00622 ssl1 transcription f 50.8 28 0.0006 27.9 4.1 47 321-367 55-111 (112)
151 KOG4718 Non-SMC (structural ma 49.3 9.1 0.0002 34.0 1.3 44 320-366 180-223 (235)
152 PF00628 PHD: PHD-finger; Int 49.1 11 0.00023 25.2 1.4 43 323-366 1-49 (51)
153 KOG0269 WD40 repeat-containing 48.9 13 0.00029 39.2 2.6 41 322-364 780-820 (839)
154 PF11770 GAPT: GRB2-binding ad 48.8 18 0.00039 30.3 2.9 29 239-267 9-37 (158)
155 PF07975 C1_4: TFIIH C1-like d 46.8 13 0.00028 25.3 1.5 42 324-366 2-50 (51)
156 KOG3005 GIY-YIG type nuclease 46.7 12 0.00027 34.5 1.8 50 320-369 181-242 (276)
157 PF05961 Chordopox_A13L: Chord 46.1 47 0.001 23.9 4.2 19 246-264 4-22 (68)
158 PF12877 DUF3827: Domain of un 45.5 42 0.0009 35.1 5.5 13 239-251 268-280 (684)
159 PF05454 DAG1: Dystroglycan (D 45.5 7 0.00015 36.9 0.0 21 244-264 151-171 (290)
160 PF00412 LIM: LIM domain; Int 45.2 21 0.00046 24.2 2.5 40 324-373 1-40 (58)
161 PHA03265 envelope glycoprotein 44.0 15 0.00032 35.3 1.9 26 239-264 349-374 (402)
162 PF06906 DUF1272: Protein of u 43.6 48 0.001 22.9 3.8 47 322-373 6-55 (57)
163 KOG1219 Uncharacterized conser 42.9 25 0.00055 42.2 3.7 19 211-232 3953-3971(4289)
164 PF07172 GRP: Glycine rich pro 42.9 22 0.00047 27.7 2.4 12 1-12 1-12 (95)
165 KOG1815 Predicted E3 ubiquitin 42.4 15 0.00033 37.1 1.9 38 318-358 67-104 (444)
166 PF01299 Lamp: Lysosome-associ 42.2 17 0.00038 34.6 2.2 24 240-264 273-296 (306)
167 KOG2979 Protein involved in DN 40.9 16 0.00035 33.6 1.6 42 321-365 176-219 (262)
168 KOG1812 Predicted E3 ubiquitin 40.8 19 0.00041 35.6 2.2 44 321-365 306-351 (384)
169 KOG0825 PHD Zn-finger protein 40.8 19 0.00041 38.3 2.2 50 320-369 95-153 (1134)
170 KOG2068 MOT2 transcription fac 40.7 21 0.00045 34.1 2.3 51 320-371 248-299 (327)
171 PF06844 DUF1244: Protein of u 40.6 16 0.00036 26.1 1.2 12 346-357 11-22 (68)
172 PF12768 Rax2: Cortical protei 40.6 49 0.0011 31.2 4.9 13 252-264 241-253 (281)
173 PF15102 TMEM154: TMEM154 prot 40.1 24 0.00052 29.6 2.4 24 240-263 59-82 (146)
174 PHA03049 IMV membrane protein; 39.9 61 0.0013 23.2 4.0 18 247-264 5-22 (68)
175 PF10577 UPF0560: Uncharacteri 39.1 28 0.00061 37.3 3.2 12 38-49 40-51 (807)
176 cd00350 rubredoxin_like Rubred 38.0 20 0.00043 21.8 1.2 20 343-368 7-26 (33)
177 PF15176 LRR19-TM: Leucine-ric 38.0 38 0.00083 26.4 3.0 21 247-267 28-48 (102)
178 PF13908 Shisa: Wnt and FGF in 36.9 40 0.00086 29.3 3.4 25 238-263 80-104 (179)
179 PF15330 SIT: SHP2-interacting 36.7 68 0.0015 25.5 4.4 22 243-264 3-24 (107)
180 PF04478 Mid2: Mid2 like cell 36.3 18 0.00039 30.6 1.1 32 233-264 42-73 (154)
181 PF13717 zinc_ribbon_4: zinc-r 36.3 19 0.00041 22.5 0.9 26 322-348 3-36 (36)
182 cd00065 FYVE FYVE domain; Zinc 36.1 28 0.00061 23.7 1.9 35 322-356 3-37 (57)
183 smart00064 FYVE Protein presen 36.1 32 0.0007 24.4 2.3 36 321-356 10-45 (68)
184 PTZ00045 apical membrane antig 35.4 44 0.00096 34.4 3.8 45 203-247 473-523 (595)
185 KOG2807 RNA polymerase II tran 35.0 43 0.00093 31.9 3.4 61 305-367 314-375 (378)
186 PF05393 Hum_adeno_E3A: Human 35.0 89 0.0019 23.8 4.4 7 258-264 50-56 (94)
187 COG3813 Uncharacterized protei 33.9 49 0.0011 24.1 2.8 52 323-377 7-59 (84)
188 PF14914 LRRC37AB_C: LRRC37A/B 33.8 57 0.0012 27.4 3.6 27 237-263 118-144 (154)
189 PF07649 C1_3: C1-like domain; 32.5 40 0.00086 19.8 1.9 29 323-352 2-30 (30)
190 PF14169 YdjO: Cold-inducible 31.2 24 0.00052 24.8 0.9 13 359-371 39-51 (59)
191 PF04710 Pellino: Pellino; In 30.3 17 0.00037 35.5 0.0 51 320-371 327-402 (416)
192 PF15069 FAM163: FAM163 family 30.2 37 0.0008 28.3 2.0 8 320-327 90-97 (143)
193 COG4736 CcoQ Cbb3-type cytochr 30.1 57 0.0012 23.0 2.6 12 253-264 18-29 (60)
194 TIGR01206 lysW lysine biosynth 29.6 22 0.00047 24.5 0.4 37 322-376 3-39 (54)
195 PF02480 Herpes_gE: Alphaherpe 29.0 18 0.0004 36.3 0.0 6 165-170 247-252 (439)
196 PF04971 Lysis_S: Lysis protei 28.9 50 0.0011 23.9 2.1 26 241-266 33-58 (68)
197 PTZ00046 rifin; Provisional 28.8 53 0.0011 32.0 3.0 8 257-264 332-339 (358)
198 PHA02902 putative IMV membrane 28.5 1.9E+02 0.0042 20.6 4.9 10 296-305 53-62 (70)
199 PF12768 Rax2: Cortical protei 28.4 77 0.0017 29.9 4.0 27 240-266 232-258 (281)
200 TIGR01477 RIFIN variant surfac 28.4 54 0.0012 31.8 3.0 8 257-264 327-334 (353)
201 PF09943 DUF2175: Uncharacteri 28.3 42 0.0009 26.3 1.8 34 322-357 3-36 (101)
202 PF07282 OrfB_Zn_ribbon: Putat 27.9 49 0.0011 23.6 2.1 35 321-355 28-64 (69)
203 PF06937 EURL: EURL protein; 27.9 47 0.001 30.8 2.4 43 321-363 30-74 (285)
204 COG5109 Uncharacterized conser 27.2 41 0.00089 31.9 1.9 46 320-366 335-383 (396)
205 PHA02681 ORF089 virion membran 27.0 1.8E+02 0.0039 21.8 4.8 15 296-310 51-65 (92)
206 PF07204 Orthoreo_P10: Orthore 26.7 42 0.00091 25.8 1.6 8 257-264 58-65 (98)
207 KOG1538 Uncharacterized conser 26.7 35 0.00075 35.8 1.5 33 338-370 1045-1077(1081)
208 PF01299 Lamp: Lysosome-associ 26.3 66 0.0014 30.6 3.3 26 241-266 270-295 (306)
209 KOG3039 Uncharacterized conser 25.7 58 0.0013 29.8 2.5 35 318-356 40-74 (303)
210 KOG1729 FYVE finger containing 25.2 13 0.00028 35.1 -1.7 38 322-360 215-252 (288)
211 PF04423 Rad50_zn_hook: Rad50 25.2 24 0.00052 24.0 0.0 11 361-371 22-32 (54)
212 PF05545 FixQ: Cbb3-type cytoc 24.7 84 0.0018 20.9 2.6 10 253-262 21-30 (49)
213 PF07191 zinc-ribbons_6: zinc- 23.7 24 0.00051 25.7 -0.2 41 322-371 2-42 (70)
214 PF02009 Rifin_STEVOR: Rifin/s 23.3 60 0.0013 30.9 2.3 20 245-264 264-283 (299)
215 smart00647 IBR In Between Ring 23.3 27 0.00059 24.2 -0.0 21 335-355 38-58 (64)
216 PRK05978 hypothetical protein; 22.0 56 0.0012 27.6 1.6 24 345-373 43-66 (148)
217 KOG2041 WD40 repeat protein [G 21.9 93 0.002 33.1 3.4 10 209-218 522-531 (1189)
218 PF10873 DUF2668: Protein of u 21.7 2.4E+02 0.0051 23.7 5.1 7 236-242 60-66 (155)
219 PF14311 DUF4379: Domain of un 21.5 58 0.0013 22.2 1.4 24 341-365 32-55 (55)
220 PF02480 Herpes_gE: Alphaherpe 20.6 33 0.00072 34.5 0.0 6 125-130 238-243 (439)
221 PF03302 VSP: Giardia variant- 20.4 1E+02 0.0023 30.6 3.5 19 243-261 369-387 (397)
222 PRK11827 hypothetical protein; 20.4 34 0.00075 24.1 0.0 18 353-370 2-19 (60)
223 PF04277 OAD_gamma: Oxaloaceta 20.3 2.8E+02 0.0061 20.2 5.0 9 242-250 8-16 (79)
224 COG1545 Predicted nucleic-acid 20.2 46 0.00099 27.8 0.8 23 339-369 31-53 (140)
225 PF09723 Zn-ribbon_8: Zinc rib 20.0 25 0.00053 22.7 -0.7 25 342-367 10-34 (42)
No 1
>PF13947 GUB_WAK_bind: Wall-associated receptor kinase galacturonan-binding
Probab=99.77 E-value=1.3e-18 Score=139.95 Aligned_cols=96 Identities=34% Similarity=0.753 Sum_probs=75.8
Q ss_pred CCCCCCCCCCCCCceecceeeCCCCCCCCCC-CCceEEecCCCCCceEeeCCceEEEEEEEcCCcEEEEecC--CCCCcc
Q 043654 27 QNCSSVSCRRDEPWIRFPFRITTRQPESCGY-PGFNVSCDSSSSQTILELPSGKFSLQAIDYDAQQIWINDQ--SNCLPQ 103 (390)
Q Consensus 27 ~~C~~~~CG~~~~~I~yPF~~~~~~~~~Cg~-p~f~L~C~~~~~~~~l~~~~~~~~V~~I~~~~~~i~v~~~--~~C~~~ 103 (390)
++|+ .+|| +++|+||||+++ +|++ |+|+|.|+++.+.++|.+..+.|+|++|+|++++|+|.++ ..|...
T Consensus 2 ~~C~-~~CG--nv~IpYPFgi~~----~C~~~~~F~L~C~~~~~~~~l~l~~~~~~V~~I~~~~~~i~v~~~~~~~~~~~ 74 (106)
T PF13947_consen 2 PGCP-SSCG--NVSIPYPFGIGP----GCGRDPGFELTCNNNTSPPKLLLSSGNYEVLSISYENGTIRVSDPISSNCYSS 74 (106)
T ss_pred CCCC-CccC--CEeecCCCccCC----CCCCCCCcEEECCCCCCCceeEecCCcEEEEEEecCCCEEEEEeccccceecC
Confidence 5797 4999 688999999975 5999 9999999988667888888899999999999999999995 344332
Q ss_pred cc-----cccccCCCCc-eeecccceEEEecCC
Q 043654 104 KI-----LSLNLSGSPF-KALYNQQFTFFNCSS 130 (390)
Q Consensus 104 ~~-----~~~~~~~~~f-~~~~~~~~~~~~C~~ 130 (390)
.. .++++.. || .+...|.++++||++
T Consensus 75 ~~~~~~~~~~~~~~-~~~~s~~~N~~~~~GC~t 106 (106)
T PF13947_consen 75 SSSNSSNSNLSLNG-PFFFSSSSNKFTVVGCNT 106 (106)
T ss_pred CCCcccccEEeecC-CceEccCCcEEEEECCCC
Confidence 11 2334444 66 667778899999974
No 2
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.7e-18 Score=160.27 Aligned_cols=76 Identities=29% Similarity=0.698 Sum_probs=63.9
Q ss_pred CChhhhhcCCceeeccCCCCCCCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCC-CCcccCCcCCCCCCC
Q 043654 297 LDGPTIESYPKIVLGESRRLPKPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNA-TCPVCRNSPARLPPL 375 (390)
Q Consensus 297 ~~~~~~~~~p~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~-~CP~CR~~~~~~~~~ 375 (390)
+.+..++++|...|........ ...|+||||+|++++++|+|| |+|.||..|||+||.++. .||+||+++......
T Consensus 207 ~~k~~l~~~p~~~f~~~~~~~~--~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~ 283 (348)
T KOG4628|consen 207 LIKRLLKKLPVRTFTKGDDEDA--TDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGS 283 (348)
T ss_pred hHHHHHhhCCcEEeccccccCC--CceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCCCC
Confidence 7788999999999887653221 269999999999999999999 999999999999998775 499999987655443
No 3
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.55 E-value=1.3e-15 Score=102.05 Aligned_cols=44 Identities=50% Similarity=1.312 Sum_probs=40.6
Q ss_pred CcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccC
Q 043654 322 NTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCR 366 (390)
Q Consensus 322 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR 366 (390)
++|+||+++|..++.+..++ |+|+||.+||.+|++++.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999999999999999 999999999999999999999997
No 4
>PF14380 WAK_assoc: Wall-associated receptor kinase C-terminal
Probab=99.52 E-value=2.6e-14 Score=111.97 Aligned_cols=87 Identities=23% Similarity=0.472 Sum_probs=62.1
Q ss_pred ccCCCCCCc-eEEEEeCCccccccCCCCCCeeeEEeeeCCCCcc----cccccccccCCCeEEEec--CCCCccccCCCC
Q 043654 140 IGCLSGANF-TIFATSSTRVVNNFIQSSSCRFVARVQVPVDWPF----YDQVVSSDLSDNLRLTWD--EPQCGDCEKGGG 212 (390)
Q Consensus 140 ~~C~~~~~~-~~~~~~~~~~~~~~~~~~~C~~~~~v~vp~~~~~----~~~~~~~~l~~gf~l~w~--~~~C~~C~~sgG 212 (390)
|+|.+++.. ..|..... ..+ ...|+.++.|+|+..... ..+.|.++|++||+|+|. ..+|.+|++|||
T Consensus 1 ~~C~~~~~~~~~~~v~~~---~~~--~~~C~~~v~vPV~~~~~~~~~~~~~~~~~~L~~GF~L~w~~~~~~C~~C~~SgG 75 (94)
T PF14380_consen 1 INCSINSGNSVSYFVFRS---SDL--AGSCQKSVVVPVLGSAVDSIDGSSGNYEEVLKKGFELEWNADSGDCRECEASGG 75 (94)
T ss_pred CccccCCCCceeEEEeCC---ccc--CCcCCEEEEEEECchhhhccccchhHHHHHHhcCcEEEEeCCCCcCcChhcCCC
Confidence 467665543 33443333 223 789999655555443221 245789999999999999 469999999999
Q ss_pred eeeeccCCcceeEeeccCCC
Q 043654 213 RCGFKNNSSTEIGCLSLHHR 232 (390)
Q Consensus 213 ~Cg~~~~~~~~f~C~~~~~~ 232 (390)
+|||+.+... |.|+|.+++
T Consensus 76 ~Cgy~~~~~~-f~C~C~dg~ 94 (94)
T PF14380_consen 76 RCGYDSNSEQ-FTCFCSDGP 94 (94)
T ss_pred EeCCCCCCce-EEEECCCCC
Confidence 9999988755 999998864
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.34 E-value=6.8e-13 Score=119.81 Aligned_cols=75 Identities=25% Similarity=0.617 Sum_probs=58.2
Q ss_pred CCChhhhhcCCceeeccCCCCCCCCCCcccccccccCCCC----cEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCC
Q 043654 296 GLDGPTIESYPKIVLGESRRLPKPDDNTCPICLAEYKPKE----TLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPA 370 (390)
Q Consensus 296 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~ICl~~~~~~~----~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~ 370 (390)
+..+..+..+|.+............+.+|+||++++.+++ .+.+++.|+|.||.+||.+|++.+.+||+||.++.
T Consensus 149 ~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 149 KNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred chhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 5677888888888654333223455789999999987653 23456569999999999999999999999999865
No 6
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.30 E-value=2e-12 Score=96.02 Aligned_cols=45 Identities=40% Similarity=1.001 Sum_probs=36.1
Q ss_pred CCcccccccccCCC----------CcEEEcCCCCCcccHhhHHHHHhCCCCCcccC
Q 043654 321 DNTCPICLAEYKPK----------ETLKTIPECTHCFHADCVDEWLRLNATCPVCR 366 (390)
Q Consensus 321 ~~~C~ICl~~~~~~----------~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR 366 (390)
++.|+||+++|.+. -.+...+ |+|.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 45699999999432 2344455 999999999999999999999998
No 7
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.9e-12 Score=114.52 Aligned_cols=52 Identities=37% Similarity=0.997 Sum_probs=46.9
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHh-CCCCCcccCCcCCC
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLR-LNATCPVCRNSPAR 371 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~-~~~~CP~CR~~~~~ 371 (390)
..+.+|+|||++|..+|.++++| |.|.||..|++.|+. -+..||+||+++.+
T Consensus 321 ~~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 44689999999999999999999 999999999999997 46679999998764
No 8
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.5e-10 Score=107.68 Aligned_cols=51 Identities=41% Similarity=1.024 Sum_probs=43.4
Q ss_pred CCCCCccccccccc-CCCC---------cEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcC
Q 043654 318 KPDDNTCPICLAEY-KPKE---------TLKTIPECTHCFHADCVDEWLRLNATCPVCRNSP 369 (390)
Q Consensus 318 ~~~~~~C~ICl~~~-~~~~---------~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~ 369 (390)
...+..|.||++++ +.+. .-+.|| |||+||.+|+..|++++++||+||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCcc
Confidence 45688999999994 4431 346788 999999999999999999999999994
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.00 E-value=4.3e-10 Score=97.54 Aligned_cols=55 Identities=27% Similarity=0.686 Sum_probs=43.6
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC----------------CCCCcccCCcCCCCCCCc
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL----------------NATCPVCRNSPARLPPLP 376 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~----------------~~~CP~CR~~~~~~~~~~ 376 (390)
..++.+|+||++.+.++ .+++ |||+||+.||.+|+.. ...||+||+++......+
T Consensus 15 ~~~~~~CpICld~~~dP---VvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvP 85 (193)
T PLN03208 15 SGGDFDCNICLDQVRDP---VVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVP 85 (193)
T ss_pred CCCccCCccCCCcCCCc---EEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEE
Confidence 44578999999998755 4566 9999999999999842 347999999987655544
No 10
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.96 E-value=6e-10 Score=74.25 Aligned_cols=44 Identities=45% Similarity=1.229 Sum_probs=37.0
Q ss_pred cccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC-CCCCcccCCcC
Q 043654 323 TCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL-NATCPVCRNSP 369 (390)
Q Consensus 323 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~-~~~CP~CR~~~ 369 (390)
+|+||++.+ .+.+...+ |+|.||..|++.|++. +..||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 34555565 9999999999999987 77899999864
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.95 E-value=5.8e-10 Score=72.35 Aligned_cols=39 Identities=44% Similarity=1.184 Sum_probs=32.9
Q ss_pred ccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCccc
Q 043654 324 CPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVC 365 (390)
Q Consensus 324 C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~C 365 (390)
|+||++.+.+ .+..++ |||+|+.+||.+|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999776 456677 99999999999999999999998
No 12
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.91 E-value=8.6e-10 Score=75.74 Aligned_cols=46 Identities=33% Similarity=0.949 Sum_probs=39.1
Q ss_pred CCcccccccccCCCCcEEEcCCCCCc-ccHhhHHHHHhCCCCCcccCCcCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHC-FHADCVDEWLRLNATCPVCRNSPA 370 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~wl~~~~~CP~CR~~~~ 370 (390)
+..|.||++... .+..+| |||. |+..|+.+|++.+..||+||+++.
T Consensus 2 ~~~C~iC~~~~~---~~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR---DVVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS---SEEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCC---ceEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 568999999844 467788 9999 999999999999999999999875
No 13
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.6e-09 Score=91.43 Aligned_cols=54 Identities=30% Similarity=0.724 Sum_probs=45.1
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARLP 373 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~ 373 (390)
..+...|+|||+.+.+. +.+..+|||+||+.||..-++....||+||+.+..+.
T Consensus 128 ~~~~~~CPiCl~~~sek--~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEK--VPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ 181 (187)
T ss_pred cccccCCCceecchhhc--cccccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence 45568999999998854 3344569999999999999999999999999776654
No 14
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=9.6e-10 Score=99.78 Aligned_cols=50 Identities=30% Similarity=0.741 Sum_probs=43.4
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCCC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARLP 373 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~ 373 (390)
....|.+|||....+ .-+| |||+||+.||.+|...+..||+||....+..
T Consensus 238 a~~kC~LCLe~~~~p---SaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNP---SATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCceEEEecCCCCC---CcCc-CcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 458999999997655 4677 9999999999999999999999999876654
No 15
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.87 E-value=1.4e-09 Score=81.33 Aligned_cols=51 Identities=29% Similarity=0.800 Sum_probs=39.2
Q ss_pred CCCcccccccccCC--------CCc-EEEcCCCCCcccHhhHHHHHhC---CCCCcccCCcCC
Q 043654 320 DDNTCPICLAEYKP--------KET-LKTIPECTHCFHADCVDEWLRL---NATCPVCRNSPA 370 (390)
Q Consensus 320 ~~~~C~ICl~~~~~--------~~~-~~~l~~C~H~FH~~Ci~~wl~~---~~~CP~CR~~~~ 370 (390)
+++.|.||...|+. ++. -.++-.|+|.||..||.+|+.. +..||+||++..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 47899999999972 222 2234469999999999999975 467999999754
No 16
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.9e-09 Score=93.94 Aligned_cols=56 Identities=29% Similarity=0.577 Sum_probs=44.8
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC---CCCCcccCCcCCCCCCCcc
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL---NATCPVCRNSPARLPPLPA 377 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~---~~~CP~CR~~~~~~~~~~~ 377 (390)
.....+|.|||+.-+++ .++. |||.||+.||.+||.. .+.||+||..+.....+|-
T Consensus 44 ~~~~FdCNICLd~akdP---VvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPl 102 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP---VVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPL 102 (230)
T ss_pred CCCceeeeeeccccCCC---EEee-cccceehHHHHHHHhhcCCCeeCCccccccccceEEee
Confidence 45679999999985544 4455 9999999999999965 3469999999988776663
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.79 E-value=3.7e-09 Score=92.54 Aligned_cols=54 Identities=26% Similarity=0.701 Sum_probs=41.9
Q ss_pred CCCCCcccccccccCCC-----CcEEEcCCCCCcccHhhHHHHHhCC------CCCcccCCcCCC
Q 043654 318 KPDDNTCPICLAEYKPK-----ETLKTIPECTHCFHADCVDEWLRLN------ATCPVCRNSPAR 371 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~-----~~~~~l~~C~H~FH~~Ci~~wl~~~------~~CP~CR~~~~~ 371 (390)
...+.+|+||||...++ ....+|+.|+|.||..||..|.+.+ .+||+||..+..
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 34578999999987432 2345777799999999999998653 459999998653
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.77 E-value=6.2e-09 Score=69.37 Aligned_cols=44 Identities=27% Similarity=0.815 Sum_probs=38.6
Q ss_pred cccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCC
Q 043654 323 TCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRN 367 (390)
Q Consensus 323 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~ 367 (390)
.|+||+++|.+....++++ |||+|+..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999996666778887 9999999999999867788999985
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.70 E-value=8.8e-09 Score=67.56 Aligned_cols=39 Identities=41% Similarity=1.164 Sum_probs=33.3
Q ss_pred ccccccccCCCCcEEEcCCCCCcccHhhHHHHHh--CCCCCccc
Q 043654 324 CPICLAEYKPKETLKTIPECTHCFHADCVDEWLR--LNATCPVC 365 (390)
Q Consensus 324 C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~--~~~~CP~C 365 (390)
|+||++.+.... +.++ |+|.|+..||.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999987653 5677 999999999999998 56679998
No 20
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.70 E-value=9.7e-09 Score=67.48 Aligned_cols=38 Identities=37% Similarity=1.023 Sum_probs=29.1
Q ss_pred ccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCC----CCCccc
Q 043654 324 CPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLN----ATCPVC 365 (390)
Q Consensus 324 C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~----~~CP~C 365 (390)
|+||++.|.++ ..|+ |||.|+..||.+|++.. ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999987 5566 99999999999999653 469987
No 21
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=7.6e-09 Score=106.26 Aligned_cols=53 Identities=36% Similarity=0.852 Sum_probs=46.3
Q ss_pred CCCCcccccccccCCCCc--EEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 319 PDDNTCPICLAEYKPKET--LKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~--~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
..+..|+||+|++..+.. .++++ |+|+||..|+..|+++.++||+||..+.+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYDY 343 (543)
T ss_pred hcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhcc
Confidence 347899999999998765 77888 999999999999999999999999955443
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.63 E-value=2.5e-08 Score=63.93 Aligned_cols=38 Identities=47% Similarity=1.234 Sum_probs=32.6
Q ss_pred ccccccccCCCCcEEEcCCCCCcccHhhHHHHHh-CCCCCccc
Q 043654 324 CPICLAEYKPKETLKTIPECTHCFHADCVDEWLR-LNATCPVC 365 (390)
Q Consensus 324 C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~-~~~~CP~C 365 (390)
|+||++. ......++ |+|.||..|++.|++ .+..||+|
T Consensus 1 C~iC~~~---~~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899998 44567788 999999999999998 66779987
No 23
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.59 E-value=5.8e-08 Score=69.97 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=41.8
Q ss_pred CcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCCCC
Q 043654 322 NTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARLPP 374 (390)
Q Consensus 322 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~~ 374 (390)
..|+||++.+.++ .+++ |||+|.+.||.+|++.+..||+|+.++.....
T Consensus 2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l 50 (63)
T smart00504 2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTHEDL 50 (63)
T ss_pred cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCChhhc
Confidence 4799999999876 4566 99999999999999989999999998755443
No 24
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.51 E-value=7e-08 Score=70.13 Aligned_cols=49 Identities=29% Similarity=0.724 Sum_probs=36.3
Q ss_pred CcccccccccC-----------CCCc-EEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCC
Q 043654 322 NTCPICLAEYK-----------PKET-LKTIPECTHCFHADCVDEWLRLNATCPVCRNSPA 370 (390)
Q Consensus 322 ~~C~ICl~~~~-----------~~~~-~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~ 370 (390)
+.|+||...|. ++++ ..+.-.|+|.||..||.+||..+..||++|++..
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 55666665553 4443 2233359999999999999999999999999753
No 25
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=6e-08 Score=69.86 Aligned_cols=51 Identities=33% Similarity=0.791 Sum_probs=37.4
Q ss_pred CCCcccccccccCC--------CCc-EEEcCCCCCcccHhhHHHHHhC---CCCCcccCCcCC
Q 043654 320 DDNTCPICLAEYKP--------KET-LKTIPECTHCFHADCVDEWLRL---NATCPVCRNSPA 370 (390)
Q Consensus 320 ~~~~C~ICl~~~~~--------~~~-~~~l~~C~H~FH~~Ci~~wl~~---~~~CP~CR~~~~ 370 (390)
.+++|-||...|.. ++. -.++-.|.|.||..||.+|+.. +..||+||++..
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 34589999988862 332 1233369999999999999955 345999998753
No 26
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.2e-07 Score=84.94 Aligned_cols=53 Identities=25% Similarity=0.668 Sum_probs=44.1
Q ss_pred CCCCCcccccccccCCCC-------cEEEcCCCCCcccHhhHHHHH--hCCCCCcccCCcCCC
Q 043654 318 KPDDNTCPICLAEYKPKE-------TLKTIPECTHCFHADCVDEWL--RLNATCPVCRNSPAR 371 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~-------~~~~l~~C~H~FH~~Ci~~wl--~~~~~CP~CR~~~~~ 371 (390)
.-++..|+||-..+.... ++-.|. |+|+||..||.-|- .++++||.|+..+..
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 446789999999887654 567788 99999999999994 678899999987643
No 27
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.32 E-value=4.8e-07 Score=61.47 Aligned_cols=42 Identities=29% Similarity=0.839 Sum_probs=33.1
Q ss_pred cccccccccCCCCcEEEcCCCC-----CcccHhhHHHHHhC--CCCCcccC
Q 043654 323 TCPICLAEYKPKETLKTIPECT-----HCFHADCVDEWLRL--NATCPVCR 366 (390)
Q Consensus 323 ~C~ICl~~~~~~~~~~~l~~C~-----H~FH~~Ci~~wl~~--~~~CP~CR 366 (390)
.|.||++ ...++...+.| |. |.+|..|+.+|+.. +.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899999 44455566788 85 99999999999954 45899995
No 28
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.30 E-value=4.7e-07 Score=59.51 Aligned_cols=38 Identities=34% Similarity=0.936 Sum_probs=22.5
Q ss_pred ccccccccCCCC-cEEEcCCCCCcccHhhHHHHHhCC----CCCc
Q 043654 324 CPICLAEYKPKE-TLKTIPECTHCFHADCVDEWLRLN----ATCP 363 (390)
Q Consensus 324 C~ICl~~~~~~~-~~~~l~~C~H~FH~~Ci~~wl~~~----~~CP 363 (390)
|+||+| |...+ .-.+|+ |||+|+++||+.|++.+ ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 76644 457788 99999999999999743 3476
No 29
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.30 E-value=4.8e-07 Score=87.92 Aligned_cols=50 Identities=24% Similarity=0.584 Sum_probs=42.3
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPAR 371 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~ 371 (390)
......|+||++.|..+ .+++ |+|.||..||..|+.....||+||..+..
T Consensus 23 Le~~l~C~IC~d~~~~P---vitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVP---VLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccCCCcCchhhhCc---cCCC-CCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 34568999999999765 3566 99999999999999988899999998643
No 30
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=3.6e-07 Score=88.38 Aligned_cols=51 Identities=31% Similarity=0.832 Sum_probs=39.8
Q ss_pred CCCcccccccccCCCC--------------cEEEcCCCCCcccHhhHHHHHh-CCCCCcccCCcCCC
Q 043654 320 DDNTCPICLAEYKPKE--------------TLKTIPECTHCFHADCVDEWLR-LNATCPVCRNSPAR 371 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~--------------~~~~l~~C~H~FH~~Ci~~wl~-~~~~CP~CR~~~~~ 371 (390)
...+|+||+.++.--. ...++| |+|+||+.|+..|+. .+..||+||.++..
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3578999999875211 133557 999999999999998 55689999998753
No 31
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1e-06 Score=79.36 Aligned_cols=50 Identities=30% Similarity=0.685 Sum_probs=40.9
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHH-HHhCCCC-CcccCCcCCCCC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDE-WLRLNAT-CPVCRNSPARLP 373 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~-wl~~~~~-CP~CR~~~~~~~ 373 (390)
.+..|+||++..... ..++ |||+|+..||.. |-+++.- ||+||+.+.+..
T Consensus 214 ~d~kC~lC~e~~~~p---s~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 214 ADYKCFLCLEEPEVP---SCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccceeeeecccCCc---cccc-ccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 478999999985544 5677 999999999999 9777665 999999876554
No 32
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=7.5e-07 Score=87.20 Aligned_cols=50 Identities=28% Similarity=0.688 Sum_probs=39.6
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC-----CCCCcccCCcCCCCCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL-----NATCPVCRNSPARLPP 374 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~-----~~~CP~CR~~~~~~~~ 374 (390)
+..|||||++.... ++..|||+||..||-++|.. ...||+||..+.....
T Consensus 186 ~~~CPICL~~~~~p----~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl 240 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP----VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDL 240 (513)
T ss_pred CCcCCcccCCCCcc----cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccce
Confidence 78999999985544 33339999999999998754 3579999999877443
No 33
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.09 E-value=7.2e-07 Score=65.57 Aligned_cols=50 Identities=26% Similarity=0.634 Sum_probs=23.7
Q ss_pred CCcccccccccCCCCc--EEEc--CCCCCcccHhhHHHHHhC---C--------CCCcccCCcCC
Q 043654 321 DNTCPICLAEYKPKET--LKTI--PECTHCFHADCVDEWLRL---N--------ATCPVCRNSPA 370 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~--~~~l--~~C~H~FH~~Ci~~wl~~---~--------~~CP~CR~~~~ 370 (390)
+.+|.||++.+...+. ..+- +.|++.||..||.+|++. . ..||.|++++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 4689999998763332 2222 269999999999999853 1 14999999874
No 34
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=3.2e-06 Score=64.78 Aligned_cols=49 Identities=27% Similarity=0.671 Sum_probs=37.4
Q ss_pred CCcccccccccC-------------CCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcC
Q 043654 321 DNTCPICLAEYK-------------PKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSP 369 (390)
Q Consensus 321 ~~~C~ICl~~~~-------------~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~ 369 (390)
-+.|+||...+. .++-+..--.|+|.||..||.+||+.+..||+|.++-
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 578999877652 1122333346999999999999999999999998763
No 35
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.98 E-value=2.4e-06 Score=82.15 Aligned_cols=50 Identities=36% Similarity=0.940 Sum_probs=41.2
Q ss_pred CCCCCcccccccccCCCC-cEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCC
Q 043654 318 KPDDNTCPICLAEYKPKE-TLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPA 370 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~-~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~ 370 (390)
..+-.+||||||.+.+.. .++.+. |.|.||..|+..|. ..+||+||.-..
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeee-cccccchHHHhhcc--cCcChhhhhhcC
Confidence 445689999999998765 355555 99999999999996 788999998655
No 36
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.94 E-value=4.3e-06 Score=62.13 Aligned_cols=52 Identities=21% Similarity=0.477 Sum_probs=39.7
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC-CCCCcccCCcCCCCCCCc
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL-NATCPVCRNSPARLPPLP 376 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~-~~~CP~CR~~~~~~~~~~ 376 (390)
...|+|+.+-|.++ .+++ +||.|-+.+|..|++. +.+||+|+.++......+
T Consensus 4 ~f~CpIt~~lM~dP---Vi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~p 56 (73)
T PF04564_consen 4 EFLCPITGELMRDP---VILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIP 56 (73)
T ss_dssp GGB-TTTSSB-SSE---EEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE
T ss_pred ccCCcCcCcHhhCc---eeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceE
Confidence 57899999999876 4567 9999999999999988 889999999887655444
No 37
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.84 E-value=1.5e-05 Score=74.59 Aligned_cols=55 Identities=27% Similarity=0.570 Sum_probs=40.6
Q ss_pred CCcccccccc-cCCCC-cEEEcCCCCCcccHhhHHHHH-hCCCCCcccCCcCCCCCCCc
Q 043654 321 DNTCPICLAE-YKPKE-TLKTIPECTHCFHADCVDEWL-RLNATCPVCRNSPARLPPLP 376 (390)
Q Consensus 321 ~~~C~ICl~~-~~~~~-~~~~l~~C~H~FH~~Ci~~wl-~~~~~CP~CR~~~~~~~~~~ 376 (390)
+..||||+.+ +..++ .+.+.+ |||.||..||+..+ .....||.|+.++......+
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~ 60 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRV 60 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhhccc
Confidence 5689999996 33333 333445 99999999999966 44567999999887765443
No 38
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.76 E-value=5.9e-06 Score=85.58 Aligned_cols=53 Identities=25% Similarity=0.696 Sum_probs=39.8
Q ss_pred CCCCCcccccccccCCCC---cEEEcCCCCCcccHhhHHHHHhC--CCCCcccCCcCC
Q 043654 318 KPDDNTCPICLAEYKPKE---TLKTIPECTHCFHADCVDEWLRL--NATCPVCRNSPA 370 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~---~~~~l~~C~H~FH~~Ci~~wl~~--~~~CP~CR~~~~ 370 (390)
..+..+||||...+..-+ .-...+.|.|.||..|+..|++. +++||+||.++.
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 456789999999876222 11233359999999999999966 567999998763
No 39
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=2.2e-05 Score=73.93 Aligned_cols=53 Identities=26% Similarity=0.681 Sum_probs=44.4
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCc-ccHhhHHHHHhCCCCCcccCCcCCCCCCC
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHC-FHADCVDEWLRLNATCPVCRNSPARLPPL 375 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~wl~~~~~CP~CR~~~~~~~~~ 375 (390)
+...+|.|||.+ ...+.+|| |.|. .|..|-+...-.+..||+||+++.....+
T Consensus 288 ~~gkeCVIClse---~rdt~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i 341 (349)
T KOG4265|consen 288 ESGKECVICLSE---SRDTVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEI 341 (349)
T ss_pred cCCCeeEEEecC---CcceEEec-chhhehhHhHHHHHHHhhcCCCccccchHhhhee
Confidence 457899999998 56678999 9999 89999999877788899999998665443
No 40
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.60 E-value=2.3e-05 Score=72.73 Aligned_cols=47 Identities=28% Similarity=0.712 Sum_probs=41.6
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcC
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSP 369 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~ 369 (390)
+.-..|-||.|-|..+ .++| |+|.||.-||..+|..+..||.|+.++
T Consensus 21 D~lLRC~IC~eyf~ip---~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~ 67 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIP---MITP-CSHTFCSLCIRKFLSYKPQCPTCCVTV 67 (442)
T ss_pred HHHHHHhHHHHHhcCc---eecc-ccchHHHHHHHHHhccCCCCCceeccc
Confidence 3457899999999877 4666 999999999999999999999999975
No 41
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=2.7e-05 Score=73.66 Aligned_cols=44 Identities=36% Similarity=1.008 Sum_probs=34.6
Q ss_pred CcccccccccCC-CCcEEEcCCCCCcccHhhHHHHHhC---CCCCcccC
Q 043654 322 NTCPICLAEYKP-KETLKTIPECTHCFHADCVDEWLRL---NATCPVCR 366 (390)
Q Consensus 322 ~~C~ICl~~~~~-~~~~~~l~~C~H~FH~~Ci~~wl~~---~~~CP~CR 366 (390)
-.|.|| +++.+ ..++.-+..|||+||..|+.+|+.. +..||+||
T Consensus 5 A~C~Ic-~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHIC-IDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEe-ccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 479999 55544 4456655569999999999999976 35799999
No 42
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=1.7e-05 Score=75.50 Aligned_cols=53 Identities=30% Similarity=0.819 Sum_probs=41.1
Q ss_pred CCCcccccccccCCC-CcEEEcCCCCCcccHhhHHHHHhC--CCCCcccCCcCCCC
Q 043654 320 DDNTCPICLAEYKPK-ETLKTIPECTHCFHADCVDEWLRL--NATCPVCRNSPARL 372 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~-~~~~~l~~C~H~FH~~Ci~~wl~~--~~~CP~CR~~~~~~ 372 (390)
....|+|||+++... +...+.+.|||.|-.+||+.||.+ ...||.|.......
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr 58 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKR 58 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHH
Confidence 457899999999864 444556679999999999999953 34699998765433
No 43
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=5.9e-05 Score=72.12 Aligned_cols=56 Identities=27% Similarity=0.830 Sum_probs=43.6
Q ss_pred CCCCcccccccccCCCC----cEEEcCCCCCcccHhhHHHHH--hC-----CCCCcccCCcCCCCCC
Q 043654 319 PDDNTCPICLAEYKPKE----TLKTIPECTHCFHADCVDEWL--RL-----NATCPVCRNSPARLPP 374 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~----~~~~l~~C~H~FH~~Ci~~wl--~~-----~~~CP~CR~~~~~~~~ 374 (390)
..+.+|.||++...+.. ..+.+|+|.|.|+..||+.|- ++ .+.||.||.......+
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 55789999999876543 244567899999999999997 44 4789999998655543
No 44
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.57 E-value=3.8e-05 Score=69.87 Aligned_cols=46 Identities=28% Similarity=0.599 Sum_probs=39.9
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCc
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNS 368 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~ 368 (390)
+....|-||-+-|..+ ..++ |||.||.-||...|..+..||+||.+
T Consensus 23 Ds~lrC~IC~~~i~ip---~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~ 68 (391)
T COG5432 23 DSMLRCRICDCRISIP---CETT-CGHTFCSLCIRRHLGTQPFCPVCRED 68 (391)
T ss_pred hhHHHhhhhhheeecc---eecc-cccchhHHHHHHHhcCCCCCcccccc
Confidence 3457899999988765 3444 99999999999999999999999987
No 45
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=2.8e-05 Score=73.83 Aligned_cols=45 Identities=36% Similarity=0.857 Sum_probs=40.1
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCR 366 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR 366 (390)
..+...|+||++.|..+ ++++ |+|.|+..||..++.....||.||
T Consensus 10 ~~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred ccccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence 34578999999999988 7888 999999999999988667799999
No 46
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.45 E-value=3e-05 Score=54.74 Aligned_cols=47 Identities=26% Similarity=0.664 Sum_probs=23.8
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
-..|++|.+-+.++ | .+..|.|+|+..||.+-+. ..||+|+.+.+..
T Consensus 7 lLrCs~C~~~l~~p--v-~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~q 53 (65)
T PF14835_consen 7 LLRCSICFDILKEP--V-CLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQ 53 (65)
T ss_dssp TTS-SSS-S--SS---B----SSS--B-TTTGGGGTT--TB-SSS--B-S-S
T ss_pred hcCCcHHHHHhcCC--c-eeccCccHHHHHHhHHhcC--CCCCCcCChHHHH
Confidence 35799999998765 2 2345999999999988554 4599999987544
No 47
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00011 Score=64.42 Aligned_cols=56 Identities=23% Similarity=0.514 Sum_probs=46.4
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC--------CCCCcccCCcCCCCCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL--------NATCPVCRNSPARLPPL 375 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~--------~~~CP~CR~~~~~~~~~ 375 (390)
.+....|..|--.+..++.+|.. |-|+||++|+++|... ...||.|..++.++.-.
T Consensus 47 sDY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nl 110 (299)
T KOG3970|consen 47 SDYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINL 110 (299)
T ss_pred cCCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccc
Confidence 55678999999999999998865 9999999999999743 34699999998766443
No 48
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=5.4e-05 Score=51.08 Aligned_cols=46 Identities=24% Similarity=0.600 Sum_probs=35.0
Q ss_pred CCcccccccccCCCCcEEEcCCCCCc-ccHhhHHHHHh-CCCCCcccCCcCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHC-FHADCVDEWLR-LNATCPVCRNSPA 370 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~wl~-~~~~CP~CR~~~~ 370 (390)
+.+|.||+|.-.+. +|..|||. .+.+|-.+-++ .+..||+||+++.
T Consensus 7 ~dECTICye~pvds----VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDS----VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchH----HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 48999999974433 44459998 77888666554 6889999999864
No 49
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.31 E-value=0.00012 Score=74.97 Aligned_cols=52 Identities=31% Similarity=0.606 Sum_probs=45.0
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCC
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPAR 371 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~ 371 (390)
.....|++|+..+.++......+ |+|.||..||+.|-+...+||+||..+..
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 44678999999998776666666 99999999999999999999999998643
No 50
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.16 E-value=0.00011 Score=67.23 Aligned_cols=51 Identities=29% Similarity=0.739 Sum_probs=42.9
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC-----------------------CCCCcccCCcCCC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL-----------------------NATCPVCRNSPAR 371 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~-----------------------~~~CP~CR~~~~~ 371 (390)
....|+|||.-|..++.+.+++ |-|.||..|+.++|.. ...||+||..+..
T Consensus 114 p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 3578999999999999999999 9999999999987621 2359999998743
No 51
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=6.8e-05 Score=70.33 Aligned_cols=52 Identities=38% Similarity=0.668 Sum_probs=42.0
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC-CCCCcccCCcCCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL-NATCPVCRNSPARL 372 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~-~~~CP~CR~~~~~~ 372 (390)
...+..|+|||+-++.. +.++.|.|.||.+||..-++. ++.||.||+.+...
T Consensus 40 ~~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 34578999999987754 566689999999999988855 78899999986433
No 52
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.83 E-value=0.00058 Score=64.84 Aligned_cols=46 Identities=39% Similarity=0.885 Sum_probs=38.9
Q ss_pred CCcccccccccCCC-CcEEEcCCCCCcccHhhHHHHHhCC--CCCcccCC
Q 043654 321 DNTCPICLAEYKPK-ETLKTIPECTHCFHADCVDEWLRLN--ATCPVCRN 367 (390)
Q Consensus 321 ~~~C~ICl~~~~~~-~~~~~l~~C~H~FH~~Ci~~wl~~~--~~CP~CR~ 367 (390)
+..|-.|-|.+-.. +.+.-|| |.|+||..|+.+.|.++ .+||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 57899999988654 4677898 99999999999999664 57999994
No 53
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.80 E-value=0.00043 Score=65.81 Aligned_cols=45 Identities=31% Similarity=0.785 Sum_probs=38.8
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC--CCCCcccCCcC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL--NATCPVCRNSP 369 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~--~~~CP~CR~~~ 369 (390)
-.-|-||-|. ...|++-| |||..|..|+..|-.. .++||.||.++
T Consensus 369 FeLCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEI 415 (563)
T KOG1785|consen 369 FELCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEI 415 (563)
T ss_pred HHHHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEe
Confidence 4679999986 56788999 9999999999999733 57899999986
No 54
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.77 E-value=0.00083 Score=47.08 Aligned_cols=42 Identities=26% Similarity=0.670 Sum_probs=27.9
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC--CCCCcc
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL--NATCPV 364 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~--~~~CP~ 364 (390)
-...|||.+..|+++ |+-.. |+|+|-++.|.+|+++ ...||+
T Consensus 10 ~~~~CPiT~~~~~~P--V~s~~-C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDP--VKSKK-CGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSE--EEESS-S--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCC--cCcCC-CCCeecHHHHHHHHHhcCCCCCCC
Confidence 367999999998854 55555 9999999999999944 445998
No 55
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.00094 Score=61.54 Aligned_cols=49 Identities=24% Similarity=0.461 Sum_probs=38.5
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC-CCCCcccCCcCCCC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL-NATCPVCRNSPARL 372 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~-~~~CP~CR~~~~~~ 372 (390)
-..+|+||+..-.-+ ..|+ |+|.|+..||.--.+. ..+|++||.++...
T Consensus 6 ~~~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 6 KKKECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cCCcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 357899999985544 4566 9999999999886654 56699999997543
No 56
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.00056 Score=57.10 Aligned_cols=41 Identities=27% Similarity=0.746 Sum_probs=33.1
Q ss_pred CceeeccCCCCCCCCCCcccccccccCCCCcEEEcCCCCCcccH
Q 043654 306 PKIVLGESRRLPKPDDNTCPICLAEYKPKETLKTIPECTHCFHA 349 (390)
Q Consensus 306 p~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~ 349 (390)
|++.|.+. +.++...+|.||||+++.++.+..|| |-.+||+
T Consensus 164 PrlsYNdD--VL~ddkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 164 PRLSYNDD--VLKDDKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred cccccccc--hhcccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 44444442 33567789999999999999999999 9999997
No 57
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.59 E-value=0.0012 Score=65.08 Aligned_cols=56 Identities=32% Similarity=0.682 Sum_probs=46.5
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCCCCCc
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARLPPLP 376 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~~~~ 376 (390)
.+++..|+||...+.++-.. + .|||.|+..|+..|+..+..||.||..+......+
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELP 73 (391)
T ss_pred CcccccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccchhhccC
Confidence 45678999999998876221 3 49999999999999999999999999887766554
No 58
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.56 E-value=0.00099 Score=54.53 Aligned_cols=39 Identities=23% Similarity=0.521 Sum_probs=32.2
Q ss_pred CCcccccccccCCCCcEEEcCCCC------CcccHhhHHHHHhCCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECT------HCFHADCVDEWLRLNA 360 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~------H~FH~~Ci~~wl~~~~ 360 (390)
..+|+||++.+...+.+..++ |+ |+||.+|+.+|-+.++
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~~ 70 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRERN 70 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhcc
Confidence 579999999999866677777 76 9999999999954443
No 59
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.00086 Score=69.31 Aligned_cols=49 Identities=24% Similarity=0.628 Sum_probs=39.7
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHh-CCCCCcccCCcCCCC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLR-LNATCPVCRNSPARL 372 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~-~~~~CP~CR~~~~~~ 372 (390)
+-..|+.|-..+++- ++++|+|+||..||..-+. +...||.|.+.+...
T Consensus 642 ~~LkCs~Cn~R~Kd~----vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDA----VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred hceeCCCccCchhhH----HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 357899999776654 6667999999999999984 567799999987544
No 60
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.0031 Score=59.27 Aligned_cols=51 Identities=29% Similarity=0.638 Sum_probs=43.8
Q ss_pred CCCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCC
Q 043654 317 PKPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPAR 371 (390)
Q Consensus 317 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~ 371 (390)
+..++..|+||... +-.....| |+|.=|..||.+-|...+.|=.|++++..
T Consensus 418 p~sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 418 PDSEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred CCcccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 45778999999875 44445667 99999999999999999999999999876
No 61
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.28 E-value=0.0028 Score=42.57 Aligned_cols=40 Identities=35% Similarity=0.934 Sum_probs=26.8
Q ss_pred ccccccccCCCCcEEEcCCCC-----CcccHhhHHHHHh--CCCCCccc
Q 043654 324 CPICLAEYKPKETLKTIPECT-----HCFHADCVDEWLR--LNATCPVC 365 (390)
Q Consensus 324 C~ICl~~~~~~~~~~~l~~C~-----H~FH~~Ci~~wl~--~~~~CP~C 365 (390)
|-||+++-.+.+ ..+.| |+ -..|..|+.+|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679999877655 33455 64 3779999999996 45679887
No 62
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.21 E-value=0.0037 Score=41.78 Aligned_cols=45 Identities=24% Similarity=0.600 Sum_probs=23.3
Q ss_pred ccccccccCCCC-cEEEcCCCCCcccHhhHHHHHh-CCCCCcccCCcC
Q 043654 324 CPICLAEYKPKE-TLKTIPECTHCFHADCVDEWLR-LNATCPVCRNSP 369 (390)
Q Consensus 324 C~ICl~~~~~~~-~~~~l~~C~H~FH~~Ci~~wl~-~~~~CP~CR~~~ 369 (390)
|++|.+++...+ .+.--+ |++..++.|...-++ .+..||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~-Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCE-CGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SST-TS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCc-CCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999995433 444454 899999999888876 578899999874
No 63
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.003 Score=61.86 Aligned_cols=51 Identities=29% Similarity=0.729 Sum_probs=43.4
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
...+.+|.||+.-+..+ .++| |||.|+..||++-+..+.-||.||..+...
T Consensus 81 ~~sef~c~vc~~~l~~p---v~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~ 131 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPP---VVTP-CGHSFCLECLDRSLDQETECPLCRDELVEL 131 (398)
T ss_pred ccchhhhhhhHhhcCCC---cccc-ccccccHHHHHHHhccCCCCcccccccccc
Confidence 35689999999988876 4567 999999999999888888899999988653
No 64
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=96.17 E-value=0.004 Score=64.83 Aligned_cols=51 Identities=27% Similarity=0.735 Sum_probs=42.3
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCC-------CCCcccCCc
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLN-------ATCPVCRNS 368 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~-------~~CP~CR~~ 368 (390)
.....+|.||.+.+...+.+.--..|-|+||..||..|.+.. -.||.|+..
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 455789999999999888888777799999999999998541 249999854
No 65
>PHA02862 5L protein; Provisional
Probab=96.02 E-value=0.0044 Score=51.03 Aligned_cols=45 Identities=20% Similarity=0.626 Sum_probs=33.8
Q ss_pred CCcccccccccCCCCcEEEcCCCC-----CcccHhhHHHHHhC--CCCCcccCCcCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECT-----HCFHADCVDEWLRL--NATCPVCRNSPA 370 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~-----H~FH~~Ci~~wl~~--~~~CP~CR~~~~ 370 (390)
...|-||+++-++. .-| |+ ..-|.+|+.+|++. +..||+||.+..
T Consensus 2 ~diCWIC~~~~~e~----~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDER----NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCCC----ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 35799999984332 345 54 67899999999954 567999999863
No 66
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.97 E-value=0.0035 Score=61.83 Aligned_cols=58 Identities=26% Similarity=0.519 Sum_probs=43.6
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHh-----CCCCCcccCCcCCCCCCCcccc
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLR-----LNATCPVCRNSPARLPPLPAAA 379 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~-----~~~~CP~CR~~~~~~~~~~~~~ 379 (390)
..+..+|.+|-++-+ ...+.. |+|.||+.||.++.. .+-+||.|...+......|+.+
T Consensus 533 nk~~~~C~lc~d~ae---d~i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~ale 595 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAE---DYIESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALE 595 (791)
T ss_pred ccCceeecccCChhh---hhHhhh-hhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhh
Confidence 456789999998743 335555 999999999999873 3568999998877665555444
No 67
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.81 E-value=0.0057 Score=66.67 Aligned_cols=53 Identities=28% Similarity=0.706 Sum_probs=42.9
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCC----------CCCcccCCcCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLN----------ATCPVCRNSPAR 371 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~----------~~CP~CR~~~~~ 371 (390)
.+.++.|.||+-+--.......|- |+|+||..|...-|.++ -+||+|+.++.+
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 677899999998866666777887 99999999998766442 369999998744
No 68
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.61 E-value=0.0098 Score=50.05 Aligned_cols=48 Identities=31% Similarity=0.771 Sum_probs=34.7
Q ss_pred CCCCCcccccccccCCCCcEEEcC-CCCC---cccHhhHHHHHhC--CCCCcccCCcC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIP-ECTH---CFHADCVDEWLRL--NATCPVCRNSP 369 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~-~C~H---~FH~~Ci~~wl~~--~~~CP~CR~~~ 369 (390)
...+..|-||.++-. +. .-| +|.. .-|.+|+.+|+.. +.+|++|+++.
T Consensus 5 s~~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 5 SLMDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred CCCCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 345789999998843 22 245 2444 5699999999954 56799999985
No 69
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.32 E-value=0.0077 Score=47.97 Aligned_cols=34 Identities=21% Similarity=0.647 Sum_probs=28.4
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHH
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVD 353 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~ 353 (390)
......|++|-..+.. ..+.+.| |||+||..|+.
T Consensus 75 i~~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 4557789999999987 5677778 99999999975
No 70
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.03 Score=52.42 Aligned_cols=47 Identities=23% Similarity=0.557 Sum_probs=36.6
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRN 367 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~ 367 (390)
......||||+..-..+. ++..=|-+||..||-..++.+..||+=-.
T Consensus 297 ~~~~~~CpvClk~r~Npt---vl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~ 343 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPT---VLEVSGYVFCYPCIFSYVVNYGHCPVTGY 343 (357)
T ss_pred CCccccChhHHhccCCCc---eEEecceEEeHHHHHHHHHhcCCCCccCC
Confidence 344679999999977653 22225899999999999999999997433
No 71
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.03 E-value=0.021 Score=51.21 Aligned_cols=57 Identities=14% Similarity=0.289 Sum_probs=50.2
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCCCCCc
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARLPPLP 376 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~~~~ 376 (390)
....||||.+.+.....+.+|..|||+|..+|++..++....||+|-.++.+...++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEe
Confidence 468899999999998888888889999999999999999999999998886665433
No 72
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.026 Score=51.55 Aligned_cols=53 Identities=23% Similarity=0.473 Sum_probs=38.7
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC--CCCCcccCCcCCCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL--NATCPVCRNSPARLP 373 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~--~~~CP~CR~~~~~~~ 373 (390)
...+.+|++|-+.=..+ .... +|+|+||.-||..=... ..+||.|-+++....
T Consensus 236 ~t~~~~C~~Cg~~PtiP--~~~~-~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq 290 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIP--HVIG-KCGHIYCYYCIATSRLWDASFTCPLCGENVEPLQ 290 (298)
T ss_pred ccCCceeeccCCCCCCC--eeec-cccceeehhhhhhhhcchhhcccCccCCCCcchh
Confidence 45678999999973322 2334 49999999999886543 468999988776443
No 73
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.65 E-value=0.014 Score=50.64 Aligned_cols=44 Identities=27% Similarity=0.604 Sum_probs=38.2
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCc
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNS 368 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~ 368 (390)
...|.||-++|..+ .++ .|||.||..|...-++....|-+|-+.
T Consensus 196 PF~C~iCKkdy~sp---vvt-~CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 196 PFLCGICKKDYESP---VVT-ECGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred ceeehhchhhccch---hhh-hcchhHHHHHHHHHhccCCcceecchh
Confidence 46899999999987 344 499999999999999999999999764
No 74
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.53 E-value=0.0098 Score=55.79 Aligned_cols=51 Identities=27% Similarity=0.569 Sum_probs=41.5
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
.....|.+|-.-|-+... +..|-|.||+.||-..|..+..||+|...+-..
T Consensus 13 n~~itC~LC~GYliDATT---I~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATT---ITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ccceehhhccceeecchh---HHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 346799999988876533 234999999999999999999999998876444
No 75
>PHA03096 p28-like protein; Provisional
Probab=94.32 E-value=0.021 Score=53.55 Aligned_cols=48 Identities=23% Similarity=0.445 Sum_probs=35.1
Q ss_pred CcccccccccCCC----CcEEEcCCCCCcccHhhHHHHHhC---CC---CCcccCCcC
Q 043654 322 NTCPICLAEYKPK----ETLKTIPECTHCFHADCVDEWLRL---NA---TCPVCRNSP 369 (390)
Q Consensus 322 ~~C~ICl~~~~~~----~~~~~l~~C~H~FH~~Ci~~wl~~---~~---~CP~CR~~~ 369 (390)
..|.||++..... .....|+.|.|.|+..||..|... .. .||.||.-+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHH
Confidence 5899999987643 245578899999999999999744 23 355555443
No 76
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=94.26 E-value=0.0097 Score=55.16 Aligned_cols=53 Identities=26% Similarity=0.615 Sum_probs=42.5
Q ss_pred CcccccccccCCCCc-EEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCCCCCc
Q 043654 322 NTCPICLAEYKPKET-LKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARLPPLP 376 (390)
Q Consensus 322 ~~C~ICl~~~~~~~~-~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~~~~ 376 (390)
..||||.+.+..... +..++ |+|.-|..|+.+....+.+||+|.+ +.++...+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~~~~~ 212 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK-PGDMSHYF 212 (276)
T ss_pred CCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc-hHHHHHHH
Confidence 459999998877664 55666 9999999999999988899999998 65544333
No 77
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=94.26 E-value=0.022 Score=37.42 Aligned_cols=41 Identities=24% Similarity=0.686 Sum_probs=24.2
Q ss_pred ccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCC--CCccc
Q 043654 324 CPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNA--TCPVC 365 (390)
Q Consensus 324 C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~--~CP~C 365 (390)
|.+|.+-...|+...... |+=.+|..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~-C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRD-CNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCc-cCchHHHHHHHHHHhcCCCCCCcCC
Confidence 677888777775544434 888999999999997765 79987
No 78
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=94.08 E-value=0.081 Score=38.84 Aligned_cols=64 Identities=20% Similarity=0.363 Sum_probs=24.2
Q ss_pred CCCCcccccccccCC---CCcEEEcCCCCCcccHhhHHHHH-hCCCCCcccCCcCCCCCCCccccccc
Q 043654 319 PDDNTCPICLAEYKP---KETLKTIPECTHCFHADCVDEWL-RLNATCPVCRNSPARLPPLPAAAAAA 382 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~---~~~~~~l~~C~H~FH~~Ci~~wl-~~~~~CP~CR~~~~~~~~~~~~~~~~ 382 (390)
.+...|.||-++.-. ++....-..|+--.++.|.+-=. ..++.||.|+++.......|....++
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~V~gDe 74 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPRVEGDE 74 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT----TTS-
T ss_pred cCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCCCCCCc
Confidence 346789999998753 33333333477778899987655 44788999999988777666444333
No 79
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=93.70 E-value=0.091 Score=36.03 Aligned_cols=35 Identities=29% Similarity=0.820 Sum_probs=31.2
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHH
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDE 354 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~ 354 (390)
....|++|-+.|.+++.+.+-|.|+=.+|++|-+.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 45689999999999999999999999999999654
No 80
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.49 E-value=0.049 Score=37.37 Aligned_cols=47 Identities=19% Similarity=0.415 Sum_probs=33.8
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARLP 373 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~ 373 (390)
...|..|... +..-.++| |+|+....|.+-+ +-+-||.|-+++....
T Consensus 7 ~~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccCCC
Confidence 3455555554 44456788 9999999998764 4567999999886543
No 81
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=0.054 Score=51.58 Aligned_cols=46 Identities=33% Similarity=0.646 Sum_probs=33.9
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPA 370 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~ 370 (390)
......|.||+++..+ ...+| |||+=+ |...-. ....||+||..+.
T Consensus 302 ~~~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs~-~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCSK-HLPQCPVCRQRIR 347 (355)
T ss_pred cCCCCceEEecCCccc---eeeec-CCcEEE--chHHHh-hCCCCchhHHHHH
Confidence 4457899999999554 67888 999955 665543 3345999999764
No 82
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.90 E-value=0.17 Score=47.77 Aligned_cols=48 Identities=25% Similarity=0.647 Sum_probs=37.7
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHH--HhCCCCCcccCCcC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEW--LRLNATCPVCRNSP 369 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~w--l~~~~~CP~CR~~~ 369 (390)
..+...|.||-+.+. ...++| |+|..+--|--+. |-..+.||+||++-
T Consensus 58 DEen~~C~ICA~~~T---Ys~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 58 DEENMNCQICAGSTT---YSARYP-CGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccceeEEecCCce---EEEecc-CCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 455688999998754 346888 9999998897654 45678899999974
No 83
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.86 E-value=0.063 Score=51.87 Aligned_cols=48 Identities=25% Similarity=0.656 Sum_probs=37.6
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC--------CCCCcccCCc
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL--------NATCPVCRNS 368 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~--------~~~CP~CR~~ 368 (390)
....|.||+++..-......+| |+|+|++.|+..+... .-.||-++-.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 3578999999987557788888 9999999999999732 2358776553
No 84
>PF04641 Rtf2: Rtf2 RING-finger
Probab=92.36 E-value=0.11 Score=48.57 Aligned_cols=58 Identities=21% Similarity=0.450 Sum_probs=45.0
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCCCCCc
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARLPPLP 376 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~~~~ 376 (390)
......|||...+|........+-.|||+|-..+|.+-- ....||+|-.++.....++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCEEE
Confidence 456789999999996655555554499999999999983 4567999999887554443
No 85
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.29 E-value=0.061 Score=49.77 Aligned_cols=45 Identities=22% Similarity=0.494 Sum_probs=38.8
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSP 369 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~ 369 (390)
...|-||.+.|..+ +..+|+|.|+..|-..=++....|++|-+..
T Consensus 241 Pf~c~icr~~f~~p----Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFYRP----VVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred Cccccccccccccc----hhhcCCceeehhhhccccccCCcceeccccc
Confidence 46799999999987 4445999999999999999999999998764
No 86
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.93 E-value=0.086 Score=49.52 Aligned_cols=58 Identities=21% Similarity=0.515 Sum_probs=41.4
Q ss_pred CCCCCcccccccccCCCC-cEEEcCCCCCcccHhhHHHHHh-CCCCCcccCCcCCCCCCCc
Q 043654 318 KPDDNTCPICLAEYKPKE-TLKTIPECTHCFHADCVDEWLR-LNATCPVCRNSPARLPPLP 376 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~-~~~~l~~C~H~FH~~Ci~~wl~-~~~~CP~CR~~~~~~~~~~ 376 (390)
.++++-|+.|+|++...+ ...-.| ||-..|+-|...--+ -+..||-||+...+....+
T Consensus 11 edeed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~denv~~ 70 (480)
T COG5175 11 EDEEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDENVRY 70 (480)
T ss_pred ccccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhccccceeE
Confidence 455667999999998765 455566 998888877554432 2678999999876665443
No 87
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.32 E-value=0.13 Score=43.94 Aligned_cols=52 Identities=33% Similarity=0.682 Sum_probs=34.5
Q ss_pred CCCcccccccccCCCC----cEEEcCCCCCcccHhhHHHHHhC----C-------CCCcccCCcCCCC
Q 043654 320 DDNTCPICLAEYKPKE----TLKTIPECTHCFHADCVDEWLRL----N-------ATCPVCRNSPARL 372 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~----~~~~l~~C~H~FH~~Ci~~wl~~----~-------~~CP~CR~~~~~~ 372 (390)
.-..|.||..---.+. .+--. .||.-||.-|+.+||+. + ..||.|..++..+
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~-qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNI-QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred hhhcccceeeeecCCcccccccccc-ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 3456777765332221 22233 49999999999999954 1 2599998887544
No 88
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.30 E-value=0.011 Score=56.31 Aligned_cols=52 Identities=23% Similarity=0.554 Sum_probs=44.8
Q ss_pred CCCcccccccccCCC-CcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 320 DDNTCPICLAEYKPK-ETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~-~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
-...|+||.+.++.. +.+..+- |||++|.+||..||.....||.||+++...
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 357899999999876 6677776 999999999999998888899999987554
No 89
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.15 E-value=0.078 Score=47.87 Aligned_cols=44 Identities=23% Similarity=0.606 Sum_probs=31.7
Q ss_pred cccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCC
Q 043654 323 TCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPA 370 (390)
Q Consensus 323 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~ 370 (390)
.|--|.-.=. ++....+. |+|+||..|...-. ...||+||+++.
T Consensus 5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~~--~~~C~lCkk~ir 48 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKASS--PDVCPLCKKSIR 48 (233)
T ss_pred EeccccccCC-CCceeeee-chhhhhhhhcccCC--ccccccccceee
Confidence 4666655433 67777777 99999999976532 228999999863
No 90
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=91.10 E-value=0.22 Score=41.96 Aligned_cols=33 Identities=30% Similarity=0.751 Sum_probs=21.4
Q ss_pred CCcccccccccCCCCcEEEcC------C-----CC-CcccHhhHHHHH
Q 043654 321 DNTCPICLAEYKPKETLKTIP------E-----CT-HCFHADCVDEWL 356 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~------~-----C~-H~FH~~Ci~~wl 356 (390)
+..|+||||-=. ....|. + |+ -.=|..|++++-
T Consensus 2 d~~CpICme~PH---NAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfk 46 (162)
T PF07800_consen 2 DVTCPICMEHPH---NAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFK 46 (162)
T ss_pred CccCceeccCCC---ceEEEEeccccCCccccccCCccchhHHHHHHH
Confidence 568999999733 333333 1 33 234899999985
No 91
>PLN02189 cellulose synthase
Probab=91.01 E-value=0.3 Score=53.12 Aligned_cols=60 Identities=23% Similarity=0.414 Sum_probs=42.3
Q ss_pred CCCCcccccccccC---CCCcEEEcCCCCCcccHhhHHHHH-hCCCCCcccCCcCCCCCCCccc
Q 043654 319 PDDNTCPICLAEYK---PKETLKTIPECTHCFHADCVDEWL-RLNATCPVCRNSPARLPPLPAA 378 (390)
Q Consensus 319 ~~~~~C~ICl~~~~---~~~~~~~l~~C~H~FH~~Ci~~wl-~~~~~CP~CR~~~~~~~~~~~~ 378 (390)
.....|.||.++.. +++.......|+--.|+.|.+-=- ..+++||.|++........|..
T Consensus 32 ~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~kgs~~v 95 (1040)
T PLN02189 32 LDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLKGSPRV 95 (1040)
T ss_pred ccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCCCc
Confidence 34568999999975 344444455588889999995433 3477899999998766544433
No 92
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.72 E-value=0.17 Score=48.05 Aligned_cols=48 Identities=25% Similarity=0.707 Sum_probs=38.6
Q ss_pred CCcccccccccCCCC---cEEEcCCCCCcccHhhHHHHHhCC-CCCcccCCcC
Q 043654 321 DNTCPICLAEYKPKE---TLKTIPECTHCFHADCVDEWLRLN-ATCPVCRNSP 369 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~---~~~~l~~C~H~FH~~Ci~~wl~~~-~~CP~CR~~~ 369 (390)
...|-||-++|...+ .-|+|. |||.|+..|+..-+... ..||.||.+.
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 358999999998764 245555 99999999999887654 4699999984
No 93
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.66 E-value=0.11 Score=54.52 Aligned_cols=43 Identities=21% Similarity=0.620 Sum_probs=33.2
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSP 369 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~ 369 (390)
...|..|--.++-+ ...- .|||.||.+|+. .....||-|+.++
T Consensus 840 ~skCs~C~~~LdlP--~VhF-~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDLP--FVHF-LCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCccccc--eeee-ecccHHHHHhhc---cCcccCCccchhh
Confidence 36899998887755 2233 399999999999 4567799999854
No 94
>PLN02436 cellulose synthase A
Probab=89.58 E-value=0.47 Score=51.74 Aligned_cols=57 Identities=26% Similarity=0.494 Sum_probs=40.9
Q ss_pred CCCcccccccccC---CCCcEEEcCCCCCcccHhhHHHHH-hCCCCCcccCCcCCCCCCCc
Q 043654 320 DDNTCPICLAEYK---PKETLKTIPECTHCFHADCVDEWL-RLNATCPVCRNSPARLPPLP 376 (390)
Q Consensus 320 ~~~~C~ICl~~~~---~~~~~~~l~~C~H~FH~~Ci~~wl-~~~~~CP~CR~~~~~~~~~~ 376 (390)
....|.||-++.. +++...-...|+--.|+.|.+-=- ..+++||.|++........+
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~kgs~ 95 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSP 95 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCC
Confidence 4569999999963 455555555677779999995433 34678999999987655444
No 95
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.53 E-value=0.11 Score=47.98 Aligned_cols=42 Identities=24% Similarity=0.631 Sum_probs=31.8
Q ss_pred CCcccccccccCCCCcEEEcCCCCCc-ccHhhHHHHHhCCCCCcccCCcCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHC-FHADCVDEWLRLNATCPVCRNSPA 370 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~wl~~~~~CP~CR~~~~ 370 (390)
..-|+||++. +..+..|+ |||. -+.+|-.. -..||+||+-+.
T Consensus 300 ~~LC~ICmDa---P~DCvfLe-CGHmVtCt~CGkr----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDA---PRDCVFLE-CGHMVTCTKCGKR----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcC---CcceEEee-cCcEEeehhhccc----cccCchHHHHHH
Confidence 6789999987 66778888 9997 46666433 347999998653
No 96
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.47 E-value=0.17 Score=46.76 Aligned_cols=44 Identities=27% Similarity=0.757 Sum_probs=35.0
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHH-hCCCCCcccCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWL-RLNATCPVCRN 367 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl-~~~~~CP~CR~ 367 (390)
...|+.|..-+... + .++.|+|.|+.+||.--| .....||.|.+
T Consensus 274 ~LkCplc~~Llrnp--~-kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRNP--M-KTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhCc--c-cCccccchHHHHHHhhhhhhccccCCCccc
Confidence 47899998876654 2 347799999999998665 56788999976
No 97
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.18 E-value=0.23 Score=52.63 Aligned_cols=37 Identities=27% Similarity=0.693 Sum_probs=30.1
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHH
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWL 356 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl 356 (390)
...++.|.+|...+.. ....+-| |||.||++||.+-.
T Consensus 814 ~ep~d~C~~C~~~ll~-~pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLI-KPFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred ecCccchHHhcchhhc-Ccceeee-ccchHHHHHHHHHH
Confidence 4567999999998874 4666778 99999999998754
No 98
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=87.17 E-value=0.95 Score=28.51 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=16.6
Q ss_pred ehhhhhhHHHHHHHHHHHHHHhhhh
Q 043654 240 IAIMVGAGVPTMLCLLGLACIICAK 264 (390)
Q Consensus 240 ~~i~i~~~i~~~l~~~~i~~~i~~~ 264 (390)
+.+++++.+.+++++++++++.+++
T Consensus 6 IaIIv~V~vg~~iiii~~~~YaCcy 30 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYYACCY 30 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666777777777776
No 99
>PLN02400 cellulose synthase
Probab=86.74 E-value=0.69 Score=50.64 Aligned_cols=59 Identities=19% Similarity=0.379 Sum_probs=40.3
Q ss_pred CCCcccccccccCC---CCcEEEcCCCCCcccHhhHHHH-HhCCCCCcccCCcCCCCCCCccc
Q 043654 320 DDNTCPICLAEYKP---KETLKTIPECTHCFHADCVDEW-LRLNATCPVCRNSPARLPPLPAA 378 (390)
Q Consensus 320 ~~~~C~ICl~~~~~---~~~~~~l~~C~H~FH~~Ci~~w-l~~~~~CP~CR~~~~~~~~~~~~ 378 (390)
....|.||-++... |+.......|+-=-|+.|.+-= -..+++||.||+........|..
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~KgsprV 97 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHKGSPRV 97 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccccCCCCC
Confidence 45699999998753 4433333446666899998432 23478899999998766655533
No 100
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=86.24 E-value=1 Score=49.32 Aligned_cols=61 Identities=21% Similarity=0.371 Sum_probs=41.9
Q ss_pred CCCcccccccccCC---CCcEEEcCCCCCcccHhhHHHH-HhCCCCCcccCCcCCCCCCCccccc
Q 043654 320 DDNTCPICLAEYKP---KETLKTIPECTHCFHADCVDEW-LRLNATCPVCRNSPARLPPLPAAAA 380 (390)
Q Consensus 320 ~~~~C~ICl~~~~~---~~~~~~l~~C~H~FH~~Ci~~w-l~~~~~CP~CR~~~~~~~~~~~~~~ 380 (390)
....|.||-++... |+.......|+-=-|+.|.+-= -..++.||.|++........|....
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~g 80 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILG 80 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCc
Confidence 45699999998753 4444444457777899999432 2447889999999976665554433
No 101
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.17 E-value=0.31 Score=44.25 Aligned_cols=52 Identities=23% Similarity=0.637 Sum_probs=36.4
Q ss_pred CCCCCcccccccccCCCCc-EEEcCCCC-----CcccHhhHHHHHhCC--------CCCcccCCcCC
Q 043654 318 KPDDNTCPICLAEYKPKET-LKTIPECT-----HCFHADCVDEWLRLN--------ATCPVCRNSPA 370 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~-~~~l~~C~-----H~FH~~Ci~~wl~~~--------~~CP~CR~~~~ 370 (390)
...+..|=||+..=++... -.+-| |. |--|..|+..|+.++ -+||.|+++..
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 3456789999987443321 23455 53 889999999998442 25999999863
No 102
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=85.34 E-value=0.53 Score=44.64 Aligned_cols=45 Identities=27% Similarity=0.712 Sum_probs=35.1
Q ss_pred CCCCcccccccccCCCCcEEEcCCC--CCcccHhhHHHHHhCCCCCcccCCcCCC
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPEC--THCFHADCVDEWLRLNATCPVCRNSPAR 371 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C--~H~FH~~Ci~~wl~~~~~CP~CR~~~~~ 371 (390)
..-.+||||.+.+..+ ... | ||+-+..|-. +....||.||-++..
T Consensus 46 ~~lleCPvC~~~l~~P----i~Q-C~nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPP----IFQ-CDNGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCccc----cee-cCCCcEehhhhhh---hhcccCCcccccccc
Confidence 3458999999999877 444 7 5888888865 347789999998863
No 103
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.18 E-value=0.48 Score=49.31 Aligned_cols=22 Identities=41% Similarity=1.056 Sum_probs=20.7
Q ss_pred CCCcccHhhHHHHHhCCCCCcc
Q 043654 343 CTHCFHADCVDEWLRLNATCPV 364 (390)
Q Consensus 343 C~H~FH~~Ci~~wl~~~~~CP~ 364 (390)
|+|+.|..|..+|++....||.
T Consensus 1048 C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1048 CGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred ccccccHHHHHHHHhcCCcCCC
Confidence 9999999999999999989984
No 104
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=85.14 E-value=0.35 Score=45.08 Aligned_cols=45 Identities=27% Similarity=0.661 Sum_probs=31.0
Q ss_pred cccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 323 TCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 323 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
.|.-|-..+. -.-|.+| |.|+||.+|-.. ...+.||.|-..+...
T Consensus 92 fCd~Cd~PI~--IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~VqrI 136 (389)
T KOG2932|consen 92 FCDRCDFPIA--IYGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQRI 136 (389)
T ss_pred eecccCCcce--eeecccc-cchhhhhhhhhc--CccccCcCcccHHHHH
Confidence 4666644332 3457889 999999999654 3466899997765433
No 105
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.96 E-value=0.34 Score=49.48 Aligned_cols=45 Identities=27% Similarity=0.548 Sum_probs=35.3
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCc
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNS 368 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~ 368 (390)
-..|.||+..|......-+.+.|||..+..|+..-. +.+|| |+.+
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~D 55 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKRD 55 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCcc
Confidence 357999999998776655666799999999998754 67788 6554
No 106
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=83.58 E-value=0.45 Score=50.22 Aligned_cols=46 Identities=30% Similarity=0.713 Sum_probs=36.0
Q ss_pred CcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC--CCCCcccCCcCCCC
Q 043654 322 NTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL--NATCPVCRNSPARL 372 (390)
Q Consensus 322 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~--~~~CP~CR~~~~~~ 372 (390)
..|.||++ .+.....+ |+|.|+.+|+..-+.. ..-||+||..+...
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 79999999 34555666 9999999999998754 33599999976443
No 107
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.42 E-value=0.66 Score=42.91 Aligned_cols=30 Identities=23% Similarity=0.572 Sum_probs=23.6
Q ss_pred CCCcccHhhHHHHHh-------------CCCCCcccCCcCCCC
Q 043654 343 CTHCFHADCVDEWLR-------------LNATCPVCRNSPARL 372 (390)
Q Consensus 343 C~H~FH~~Ci~~wl~-------------~~~~CP~CR~~~~~~ 372 (390)
|.-.+|++|+.+|+. ++-+||+||+.....
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 778999999999862 345799999986443
No 108
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.75 E-value=0.74 Score=41.28 Aligned_cols=39 Identities=28% Similarity=0.758 Sum_probs=29.7
Q ss_pred ccccccccCCCCcEEEcCCCCCc-ccHhhHHHHHhCCCCCcccCCcCC
Q 043654 324 CPICLAEYKPKETLKTIPECTHC-FHADCVDEWLRLNATCPVCRNSPA 370 (390)
Q Consensus 324 C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~wl~~~~~CP~CR~~~~ 370 (390)
|-.|.+. ...|..+| |.|. +|..|=+. -..||+|+....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhh
Confidence 8888876 66788999 9865 77888443 456999998653
No 109
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=81.47 E-value=0.9 Score=29.12 Aligned_cols=22 Identities=18% Similarity=0.153 Sum_probs=9.1
Q ss_pred hhhhHHHHHHHHHHHHHHhhhh
Q 043654 243 MVGAGVPTMLCLLGLACIICAK 264 (390)
Q Consensus 243 ~i~~~i~~~l~~~~i~~~i~~~ 264 (390)
.+++-+.++++++++++++++|
T Consensus 16 ~VvVPV~vI~~vl~~~l~~~~r 37 (40)
T PF08693_consen 16 GVVVPVGVIIIVLGAFLFFWYR 37 (40)
T ss_pred EEEechHHHHHHHHHHhheEEe
Confidence 3333333444444444444443
No 110
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=81.26 E-value=0.48 Score=31.38 Aligned_cols=29 Identities=24% Similarity=0.729 Sum_probs=21.8
Q ss_pred CC-CcccHhhHHHHHhCCCCCcccCCcCCC
Q 043654 343 CT-HCFHADCVDEWLRLNATCPVCRNSPAR 371 (390)
Q Consensus 343 C~-H~FH~~Ci~~wl~~~~~CP~CR~~~~~ 371 (390)
|. |-.+..|+...|.+...||+|..++..
T Consensus 18 C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp -SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred ecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 76 999999999999999999999987653
No 111
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=80.21 E-value=2.5 Score=46.31 Aligned_cols=57 Identities=23% Similarity=0.388 Sum_probs=40.4
Q ss_pred CCCcccccccccCC---CCcEEEcCCCCCcccHhhHHHHH-hCCCCCcccCCcCCCCCCCc
Q 043654 320 DDNTCPICLAEYKP---KETLKTIPECTHCFHADCVDEWL-RLNATCPVCRNSPARLPPLP 376 (390)
Q Consensus 320 ~~~~C~ICl~~~~~---~~~~~~l~~C~H~FH~~Ci~~wl-~~~~~CP~CR~~~~~~~~~~ 376 (390)
....|.||-++... |+.......|+--.|+.|.+-=. ..+++||.|++........+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~ 74 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCP 74 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCC
Confidence 46789999998753 44444444577779999995433 34778999999987655444
No 112
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=79.74 E-value=0.6 Score=51.54 Aligned_cols=46 Identities=26% Similarity=0.678 Sum_probs=37.8
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCc
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNS 368 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~ 368 (390)
....|.||++.+..... +. .|+|.++..|+..|+..+..||+|+..
T Consensus 1152 ~~~~c~ic~dil~~~~~--I~-~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGG--IA-GCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred cccchHHHHHHHHhcCC--ee-eechhHhhhHHHHHHHHhccCcchhhh
Confidence 35699999999874322 23 399999999999999999999999864
No 113
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=78.69 E-value=1.5 Score=42.47 Aligned_cols=29 Identities=24% Similarity=0.825 Sum_probs=22.8
Q ss_pred CCCcccHhhHHHHHhC-------------CCCCcccCCcCCC
Q 043654 343 CTHCFHADCVDEWLRL-------------NATCPVCRNSPAR 371 (390)
Q Consensus 343 C~H~FH~~Ci~~wl~~-------------~~~CP~CR~~~~~ 371 (390)
|.-++|.+|+.+|+.. +-.||+||+....
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 7788999999998732 3469999998653
No 114
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=78.08 E-value=1.4 Score=36.10 Aligned_cols=53 Identities=25% Similarity=0.454 Sum_probs=38.1
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHh---CCCCCcccCCcCCCC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLR---LNATCPVCRNSPARL 372 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~---~~~~CP~CR~~~~~~ 372 (390)
.-.+|-||.|.-.+..-+.---.||-..+..|-...|+ .+..||+|+++....
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 35899999998665533332226899899888876554 367899999987544
No 115
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=77.20 E-value=1.6 Score=41.73 Aligned_cols=51 Identities=27% Similarity=0.701 Sum_probs=37.4
Q ss_pred CCcccccccccCCCCc-EEEcCCCC-----CcccHhhHHHHHh--CCCCCcccCCcCCCC
Q 043654 321 DNTCPICLAEYKPKET-LKTIPECT-----HCFHADCVDEWLR--LNATCPVCRNSPARL 372 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~-~~~l~~C~-----H~FH~~Ci~~wl~--~~~~CP~CR~~~~~~ 372 (390)
+..|-||.++..+... ....| |. +..|+.|++.|+. .+..|.+|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 5789999998665432 33455 64 6789999999986 567799998865433
No 116
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.26 E-value=1.4 Score=45.78 Aligned_cols=49 Identities=29% Similarity=0.796 Sum_probs=40.1
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARLPP 374 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~~ 374 (390)
......|.||+++. ..|..+ |. |..|+..|+..+..||+|++.+.....
T Consensus 476 ~~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 476 REPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDDF 524 (543)
T ss_pred hcccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhcccc
Confidence 34578999999997 456777 88 999999999999999999987644443
No 117
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=76.16 E-value=2.4 Score=39.41 Aligned_cols=53 Identities=30% Similarity=0.577 Sum_probs=37.8
Q ss_pred cccccccc-cCCCCcEEEcCCCCCcccHhhHHHHHhC-CCCCcccCCcCCCCCCC
Q 043654 323 TCPICLAE-YKPKETLKTIPECTHCFHADCVDEWLRL-NATCPVCRNSPARLPPL 375 (390)
Q Consensus 323 ~C~ICl~~-~~~~~~~~~l~~C~H~FH~~Ci~~wl~~-~~~CP~CR~~~~~~~~~ 375 (390)
.|++|..+ |..++.......|+|..|..|++..+.. ...||-|-..+....-.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr 56 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFR 56 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccc
Confidence 58888764 4455544444459999999999999855 45699998876554433
No 118
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=75.65 E-value=3.8 Score=35.77 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=10.9
Q ss_pred eehhhhhhHHHHHHHHHHHHHHh
Q 043654 239 RIAIMVGAGVPTMLCLLGLACII 261 (390)
Q Consensus 239 ~~~i~i~~~i~~~l~~~~i~~~i 261 (390)
+..|++++++++++++++|++++
T Consensus 77 ~~~iivgvi~~Vi~Iv~~Iv~~~ 99 (179)
T PF13908_consen 77 ITGIIVGVICGVIAIVVLIVCFC 99 (179)
T ss_pred eeeeeeehhhHHHHHHHhHhhhe
Confidence 34455555544444444444444
No 119
>PF15102 TMEM154: TMEM154 protein family
Probab=74.72 E-value=2.6 Score=35.27 Aligned_cols=7 Identities=29% Similarity=1.161 Sum_probs=3.8
Q ss_pred hhHHHHH
Q 043654 350 DCVDEWL 356 (390)
Q Consensus 350 ~Ci~~wl 356 (390)
+=+|+|+
T Consensus 128 eeldkwm 134 (146)
T PF15102_consen 128 EELDKWM 134 (146)
T ss_pred HHHHhHH
Confidence 3456665
No 120
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.95 E-value=3.1 Score=40.44 Aligned_cols=46 Identities=17% Similarity=0.440 Sum_probs=37.9
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCC---CCcccCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNA---TCPVCRN 367 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~---~CP~CR~ 367 (390)
-..|||=.+.=.+...-..|. |||+..++-|++..+... -||.|=.
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred eeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 578999888877777777888 999999999999876643 5999933
No 121
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=71.33 E-value=9.3 Score=31.15 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=15.1
Q ss_pred ccCCCCeeeeccCCcceeEeeccCCC
Q 043654 207 CEKGGGRCGFKNNSSTEIGCLSLHHR 232 (390)
Q Consensus 207 C~~sgG~Cg~~~~~~~~f~C~~~~~~ 232 (390)
|-. |.|.|-.+-.. ..|.|..+.
T Consensus 53 ClH--G~C~yI~dl~~-~~CrC~~GY 75 (139)
T PHA03099 53 CLH--GDCIHARDIDG-MYCRCSHGY 75 (139)
T ss_pred eEC--CEEEeeccCCC-ceeECCCCc
Confidence 555 58888765554 778876544
No 122
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=70.16 E-value=3.5 Score=36.86 Aligned_cols=43 Identities=28% Similarity=0.806 Sum_probs=31.6
Q ss_pred CCCCcccccccc-----cCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCC
Q 043654 319 PDDNTCPICLAE-----YKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRN 367 (390)
Q Consensus 319 ~~~~~C~ICl~~-----~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~ 367 (390)
..+..|.||-++ |+. +.+..-++|+-+||+.|.. +..||-|..
T Consensus 150 ~kGfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 150 QKGFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred hCCCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 346899999853 222 3566677899999999976 267999954
No 123
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=69.38 E-value=1.3 Score=46.12 Aligned_cols=50 Identities=24% Similarity=0.621 Sum_probs=38.7
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC---CCCCcccCCcCCCCCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL---NATCPVCRNSPARLPP 374 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~---~~~CP~CR~~~~~~~~ 374 (390)
..+|+||++.+..+ .+.+|.|.|...|+..-+.. ...||+|+..+.....
T Consensus 21 ~lEc~ic~~~~~~p----~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~ 73 (684)
T KOG4362|consen 21 ILECPICLEHVKEP----SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSL 73 (684)
T ss_pred hccCCceeEEeecc----chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhc
Confidence 57999999998877 44459999999998875533 4569999987655443
No 124
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=69.23 E-value=2.2 Score=38.47 Aligned_cols=48 Identities=31% Similarity=0.769 Sum_probs=35.8
Q ss_pred CCCccccccccc-CCCC-cEEEcCCCCCcccHhhHHHHHhCC-CCCc--ccCC
Q 043654 320 DDNTCPICLAEY-KPKE-TLKTIPECTHCFHADCVDEWLRLN-ATCP--VCRN 367 (390)
Q Consensus 320 ~~~~C~ICl~~~-~~~~-~~~~l~~C~H~FH~~Ci~~wl~~~-~~CP--~CR~ 367 (390)
.+..||||..+- -.++ .+-+-|.|-|..|..|+++-+... ..|| -|-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 456899999863 3444 444556799999999999998665 4599 6754
No 125
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.05 E-value=1.9 Score=42.64 Aligned_cols=38 Identities=26% Similarity=0.712 Sum_probs=28.4
Q ss_pred CCCcccccccccCCC-CcEEEcCCCCCcccHhhHHHHHhC
Q 043654 320 DDNTCPICLAEYKPK-ETLKTIPECTHCFHADCVDEWLRL 358 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~-~~~~~l~~C~H~FH~~Ci~~wl~~ 358 (390)
...+|.||..+.... +...+. +|+|.|+.+|+.+.+..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHh-cccchhhhHHhHHHhhh
Confidence 467999999444444 555545 49999999999988753
No 126
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=67.11 E-value=3.2 Score=24.00 Aligned_cols=23 Identities=43% Similarity=0.704 Sum_probs=14.1
Q ss_pred cccccccccCCCCcEEEcCCCCCcc
Q 043654 323 TCPICLAEYKPKETLKTIPECTHCF 347 (390)
Q Consensus 323 ~C~ICl~~~~~~~~~~~l~~C~H~F 347 (390)
.||-|..++... .+.-|.|||.|
T Consensus 2 ~CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhh--cCcCCCCCCCC
Confidence 577777765432 34555677776
No 127
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=67.11 E-value=3.8 Score=43.30 Aligned_cols=51 Identities=25% Similarity=0.666 Sum_probs=37.1
Q ss_pred CCCCcccccccccCCCCcEEEcCCCC---CcccHhhHHHHHhC--CCCCcccCCcC
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECT---HCFHADCVDEWLRL--NATCPVCRNSP 369 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~---H~FH~~Ci~~wl~~--~~~CP~CR~~~ 369 (390)
+++..|-||..+=.+++.+-.-=+|. .-.|++|+.+|+.- ...|-+|+.++
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~ 65 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY 65 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence 44589999998866666544322343 45899999999954 45699999875
No 128
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=66.31 E-value=6.8 Score=26.48 Aligned_cols=43 Identities=19% Similarity=0.549 Sum_probs=19.8
Q ss_pred CcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC-----CCCCcccCCc
Q 043654 322 NTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL-----NATCPVCRNS 368 (390)
Q Consensus 322 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~-----~~~CP~CR~~ 368 (390)
..|+|....+.. .+|-.. |.|.-+- =++.||.. .-.||+|.++
T Consensus 3 L~CPls~~~i~~--P~Rg~~-C~H~~CF-Dl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRI--PVRGKN-CKHLQCF-DLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SS--EEEETT---SS--E-EHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEe--CccCCc-CcccceE-CHHHHHHHhhccCCeECcCCcCc
Confidence 468888877664 467666 9988431 23456533 2359999864
No 129
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=64.63 E-value=3.3 Score=40.59 Aligned_cols=35 Identities=26% Similarity=0.708 Sum_probs=29.7
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL 358 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~ 358 (390)
++..|+||..-|.++ ++|| |+|..++.|-..-+.+
T Consensus 3 eelkc~vc~~f~~ep---iil~-c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYREP---IILP-CSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccCc---eEee-cccHHHHHHHHhhccc
Confidence 467899999999877 6788 9999999998876644
No 130
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=64.53 E-value=3.2 Score=33.64 Aligned_cols=11 Identities=18% Similarity=0.193 Sum_probs=3.9
Q ss_pred Eee-ccCCCCCC
Q 043654 225 GCL-SLHHREIP 235 (390)
Q Consensus 225 ~C~-~~~~~~~~ 235 (390)
.|. |......+
T Consensus 63 ~C~~C~a~p~~p 74 (129)
T PF12191_consen 63 FCQGCPAAPPAP 74 (129)
T ss_dssp CCCCHSS-SSS-
T ss_pred cccCCCCCCCCC
Confidence 453 44434443
No 131
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=64.32 E-value=2.3 Score=30.20 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 043654 247 GVPTMLCLLGLACIICAKL 265 (390)
Q Consensus 247 ~i~~~l~~~~i~~~i~~~~ 265 (390)
+++++++++.+++++.+|.
T Consensus 18 ~Vvgll~ailLIlf~iyR~ 36 (64)
T PF01034_consen 18 GVVGLLFAILLILFLIYRM 36 (64)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555555556666653
No 132
>PF15050 SCIMP: SCIMP protein
Probab=63.89 E-value=7 Score=31.36 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=16.7
Q ss_pred ehhhhhhHHHHHHHHHHHHHHhhhh
Q 043654 240 IAIMVGAGVPTMLCLLGLACIICAK 264 (390)
Q Consensus 240 ~~i~i~~~i~~~l~~~~i~~~i~~~ 264 (390)
++|+++++|+++-+.++++++..+|
T Consensus 8 FWiiLAVaII~vS~~lglIlyCvcR 32 (133)
T PF15050_consen 8 FWIILAVAIILVSVVLGLILYCVCR 32 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777766666667776665555
No 133
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=63.61 E-value=3.2 Score=34.97 Aligned_cols=11 Identities=36% Similarity=0.860 Sum_probs=4.4
Q ss_pred hhhhhhHHHHH
Q 043654 241 AIMVGAGVPTM 251 (390)
Q Consensus 241 ~i~i~~~i~~~ 251 (390)
.+.+|++++++
T Consensus 53 GvVVGVGg~il 63 (154)
T PF04478_consen 53 GVVVGVGGPIL 63 (154)
T ss_pred EEEecccHHHH
Confidence 33444444333
No 134
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=61.99 E-value=7.5 Score=36.22 Aligned_cols=14 Identities=14% Similarity=0.114 Sum_probs=7.1
Q ss_pred HHHHHHHHHHhhhh
Q 043654 251 MLCLLGLACIICAK 264 (390)
Q Consensus 251 ~l~~~~i~~~i~~~ 264 (390)
++.++.|+++||.+
T Consensus 270 il~vvliiLYiWly 283 (295)
T TIGR01478 270 ILTVVLIILYIWLY 283 (295)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444455556655
No 135
>PHA03164 hypothetical protein; Provisional
Probab=61.67 E-value=13 Score=27.32 Aligned_cols=41 Identities=7% Similarity=0.113 Sum_probs=20.5
Q ss_pred eEeeccCCCCCC--------ccceehhhhhhHHHHHHHHHHHHHHhhhh
Q 043654 224 IGCLSLHHREIP--------KAARIAIMVGAGVPTMLCLLGLACIICAK 264 (390)
Q Consensus 224 f~C~~~~~~~~~--------~~~~~~i~i~~~i~~~l~~~~i~~~i~~~ 264 (390)
..|+.+++.... +....++++..+++++++++.++++++..
T Consensus 35 veclpPpqisrtawnlwnnrRktftFlvLtgLaIamILfiifvlyvFnV 83 (88)
T PHA03164 35 VECLPPPQISRTAWNLWNNRRKTFTFLVLTGLAIAMILFIIFVLYVFNV 83 (88)
T ss_pred ceecCCcccCchhHHHHHhhhheeehHHHHHHHHHHHHHHHHHHHheee
Confidence 458876654321 11113444444444555666666666554
No 136
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=60.71 E-value=11 Score=23.11 Aligned_cols=37 Identities=19% Similarity=0.482 Sum_probs=24.1
Q ss_pred cccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcC
Q 043654 323 TCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSP 369 (390)
Q Consensus 323 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~ 369 (390)
.|+.|-+.+...+..... =+..||.+| ..|..|+.++
T Consensus 1 ~C~~C~~~i~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLRA--LGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEEe--CCccccccC--------CCCcccCCcC
Confidence 377888887765333222 367899887 4577777655
No 137
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PTZ00370 STEVOR; Provisional
Probab=59.31 E-value=8.3 Score=36.02 Aligned_cols=14 Identities=14% Similarity=0.137 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhhh
Q 043654 251 MLCLLGLACIICAK 264 (390)
Q Consensus 251 ~l~~~~i~~~i~~~ 264 (390)
++.++.|+++||.+
T Consensus 266 il~vvliilYiwly 279 (296)
T PTZ00370 266 ILAVVLIILYIWLY 279 (296)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444455556655
No 139
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.69 E-value=7.5 Score=35.48 Aligned_cols=56 Identities=18% Similarity=0.288 Sum_probs=42.5
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCCCCCc
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARLPPLP 376 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~~~~ 376 (390)
.....|||=--+|........+-.|||+|-..-+.+. ..++|++|.+.+.....++
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVIV 164 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeEe
Confidence 3467899988888766665566669999999888775 3678999999876655443
No 140
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=56.72 E-value=11 Score=31.24 Aligned_cols=14 Identities=7% Similarity=0.475 Sum_probs=5.7
Q ss_pred HHHHHHHHHHhhhh
Q 043654 251 MLCLLGLACIICAK 264 (390)
Q Consensus 251 ~l~~~~i~~~i~~~ 264 (390)
+++++.+++++|.+
T Consensus 41 liiiiivli~lcss 54 (189)
T PF05568_consen 41 LIIIIIVLIYLCSS 54 (189)
T ss_pred HHHHHHHHHHHHhh
Confidence 33333344444443
No 141
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=55.77 E-value=3.1 Score=42.91 Aligned_cols=46 Identities=20% Similarity=0.647 Sum_probs=29.5
Q ss_pred CCCCCccccccc-----ccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCC
Q 043654 318 KPDDNTCPICLA-----EYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRN 367 (390)
Q Consensus 318 ~~~~~~C~ICl~-----~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~ 367 (390)
......|.||.. .|+ .+.++.--.|+++||..|+.. .+..||-|-.
T Consensus 508 ~~~gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 508 TGKGFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred ccCeeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHhc---cCCCCCchHH
Confidence 345678888833 222 233444445999999999654 3445999954
No 142
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=55.71 E-value=7.6 Score=26.18 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhcc
Q 043654 244 VGAGVPTMLCLLGLACIICAKLN 266 (390)
Q Consensus 244 i~~~i~~~l~~~~i~~~i~~~~r 266 (390)
.|.+++++++++++++++..+.+
T Consensus 17 gGLi~A~vlfi~Gi~iils~kck 39 (50)
T PF02038_consen 17 GGLIFAGVLFILGILIILSGKCK 39 (50)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHH
T ss_pred cchHHHHHHHHHHHHHHHcCccc
Confidence 35556667777788777766543
No 143
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=55.29 E-value=7.4 Score=24.44 Aligned_cols=26 Identities=31% Similarity=0.839 Sum_probs=16.1
Q ss_pred cccccccccCCCCc-------EEEcCCCCCccc
Q 043654 323 TCPICLAEYKPKET-------LKTIPECTHCFH 348 (390)
Q Consensus 323 ~C~ICl~~~~~~~~-------~~~l~~C~H~FH 348 (390)
.||=|...|.-++. -..-++|+|+|+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 57778777765432 223445888875
No 144
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=54.47 E-value=11 Score=29.67 Aligned_cols=7 Identities=14% Similarity=-0.036 Sum_probs=2.5
Q ss_pred HHHHhhh
Q 043654 257 LACIICA 263 (390)
Q Consensus 257 i~~~i~~ 263 (390)
++++++.
T Consensus 79 y~IyYFV 85 (101)
T PF06024_consen 79 YAIYYFV 85 (101)
T ss_pred hhheEEE
Confidence 3333333
No 145
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.62 E-value=5.5 Score=42.11 Aligned_cols=8 Identities=25% Similarity=0.758 Sum_probs=4.7
Q ss_pred ceEEecCC
Q 043654 60 FNVSCDSS 67 (390)
Q Consensus 60 f~L~C~~~ 67 (390)
|-.+|.++
T Consensus 85 y~asCS~D 92 (846)
T KOG2066|consen 85 YVASCSDD 92 (846)
T ss_pred eEEEecCC
Confidence 55566655
No 146
>PLN02195 cellulose synthase A
Probab=51.86 E-value=17 Score=39.94 Aligned_cols=51 Identities=18% Similarity=0.342 Sum_probs=36.8
Q ss_pred CCCcccccccccCC---CCcEEEcCCCCCcccHhhHHHHH-hCCCCCcccCCcCC
Q 043654 320 DDNTCPICLAEYKP---KETLKTIPECTHCFHADCVDEWL-RLNATCPVCRNSPA 370 (390)
Q Consensus 320 ~~~~C~ICl~~~~~---~~~~~~l~~C~H~FH~~Ci~~wl-~~~~~CP~CR~~~~ 370 (390)
....|.||-++... ++.......|+---|+.|.+-=- ..++.||.|++...
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 35689999997753 44444444588889999994333 34678999999887
No 147
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=51.81 E-value=17 Score=34.36 Aligned_cols=53 Identities=26% Similarity=0.578 Sum_probs=35.6
Q ss_pred CCCCCcccccccccC-----CC----------C-cEEEcCCCCCcccHhhHHHHHhC---------CCCCcccCCcCCC
Q 043654 318 KPDDNTCPICLAEYK-----PK----------E-TLKTIPECTHCFHADCVDEWLRL---------NATCPVCRNSPAR 371 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~-----~~----------~-~~~~l~~C~H~FH~~Ci~~wl~~---------~~~CP~CR~~~~~ 371 (390)
.....+||+|+..=. .+ - ...-.| |||+--..-..-|.+. +..||.|-+.+.-
T Consensus 338 g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 338 GQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred CcccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 344789999998521 00 0 112345 9999888888889754 4579999876643
No 148
>PTZ00087 thrombosponding-related protein; Provisional
Probab=51.66 E-value=18 Score=33.44 Aligned_cols=57 Identities=16% Similarity=0.271 Sum_probs=27.4
Q ss_pred ccCCCCeeeeccCCcceeEee--ccCCCC----CCccceehhhhhhHHHHHHHHHHHHHHhhhh
Q 043654 207 CEKGGGRCGFKNNSSTEIGCL--SLHHRE----IPKAARIAIMVGAGVPTMLCLLGLACIICAK 264 (390)
Q Consensus 207 C~~sgG~Cg~~~~~~~~f~C~--~~~~~~----~~~~~~~~i~i~~~i~~~l~~~~i~~~i~~~ 264 (390)
|...||.|-.....+. -.|. |++..+ .......++++..-++.+++++.|+..++++
T Consensus 259 CTNPgGdC~~G~s~ET-r~CN~~cPPCp~~~~~~~sst~~i~~i~~piv~vi~v~~ily~ify~ 321 (340)
T PTZ00087 259 CAHPSGDCFKGDLKET-RPCQVPLPPCNSLFEHKESSTFKILIILLPIVLIICVMGILYHIFYK 321 (340)
T ss_pred CCCCCCCCCCCchhhc-ccccCCCCCCCCccccCCCCcceEeeeehhHHHHHHHHHHHHHHhhh
Confidence 7777888821112222 3565 222211 1122223334444444556667777777776
No 149
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=50.99 E-value=8 Score=27.76 Aligned_cols=37 Identities=14% Similarity=0.402 Sum_probs=19.5
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHH
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEW 355 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~w 355 (390)
.+...|.+|...|..-..-..-..||++|+..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 3457899999999765443444469999999997654
No 150
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.75 E-value=28 Score=27.93 Aligned_cols=47 Identities=19% Similarity=0.341 Sum_probs=33.0
Q ss_pred CCcccccccccCCCC----------cEEEcCCCCCcccHhhHHHHHhCCCCCcccCC
Q 043654 321 DNTCPICLAEYKPKE----------TLKTIPECTHCFHADCVDEWLRLNATCPVCRN 367 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~----------~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~ 367 (390)
...|--|+..|.... ..-.-++|++.|+.+|=.-+-..-..||-|.+
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~~ 111 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCIH 111 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCCC
Confidence 356999999886531 12335679999999996555555567999963
No 151
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=49.32 E-value=9.1 Score=34.01 Aligned_cols=44 Identities=20% Similarity=0.640 Sum_probs=35.4
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCR 366 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR 366 (390)
+-..|.+|.+-.-.+ +|--. |+-.+|..|+...+++...||.|-
T Consensus 180 nlk~Cn~Ch~LvIqg--~rCg~-c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQG--IRCGS-CNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHHHhHhHHHhhee--eccCc-ccchhhhHHHHHHhcccCcCCchh
Confidence 457899999876654 23334 888999999999999999999993
No 152
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=49.07 E-value=11 Score=25.22 Aligned_cols=43 Identities=26% Similarity=0.641 Sum_probs=28.7
Q ss_pred cccccccccCCCCcEEEcCCCCCcccHhhHHHHHh------CCCCCcccC
Q 043654 323 TCPICLAEYKPKETLKTIPECTHCFHADCVDEWLR------LNATCPVCR 366 (390)
Q Consensus 323 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~------~~~~CP~CR 366 (390)
.|.||...-.. +.+..--.|+..||..|+..=.. ..-.||.|+
T Consensus 1 ~C~vC~~~~~~-~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDD-GDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTT-SSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCC-CCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 38899994443 34444445999999999876432 244688875
No 153
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=48.89 E-value=13 Score=39.16 Aligned_cols=41 Identities=17% Similarity=0.359 Sum_probs=30.7
Q ss_pred CcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcc
Q 043654 322 NTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPV 364 (390)
Q Consensus 322 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~ 364 (390)
..|.+|-..+. |. ...-+.|+|.-|.+|+..|+..++-||.
T Consensus 780 ~~CtVC~~vi~-G~-~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIR-GV-DVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceee-ee-EeecccccccccHHHHHHHHhcCCCCcc
Confidence 47888865543 22 2234469999999999999999888876
No 154
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=48.83 E-value=18 Score=30.34 Aligned_cols=29 Identities=28% Similarity=0.496 Sum_probs=19.0
Q ss_pred eehhhhhhHHHHHHHHHHHHHHhhhhccC
Q 043654 239 RIAIMVGAGVPTMLCLLGLACIICAKLNS 267 (390)
Q Consensus 239 ~~~i~i~~~i~~~l~~~~i~~~i~~~~r~ 267 (390)
.+.+++|+.+++++++.+|.+++.+++|.
T Consensus 9 sv~i~igi~Ll~lLl~cgiGcvwhwkhr~ 37 (158)
T PF11770_consen 9 SVAISIGISLLLLLLLCGIGCVWHWKHRD 37 (158)
T ss_pred hHHHHHHHHHHHHHHHHhcceEEEeeccC
Confidence 46677777777766666666666655444
No 155
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=46.80 E-value=13 Score=25.28 Aligned_cols=42 Identities=26% Similarity=0.660 Sum_probs=21.6
Q ss_pred ccccccccCCCC------cEEEcCCCCCcccHhhHHHHHhC-CCCCcccC
Q 043654 324 CPICLAEYKPKE------TLKTIPECTHCFHADCVDEWLRL-NATCPVCR 366 (390)
Q Consensus 324 C~ICl~~~~~~~------~~~~l~~C~H~FH~~Ci~~wl~~-~~~CP~CR 366 (390)
|--|+..|.... ..-.-|+|++.|+.+| |.++.. -.+||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 455666666542 3456678999999999 444433 34698884
No 156
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=46.74 E-value=12 Score=34.48 Aligned_cols=50 Identities=24% Similarity=0.515 Sum_probs=37.2
Q ss_pred CCCcccccccccCCCCcEEEc---CCCCCcccHhhHHHHHhC---------CCCCcccCCcC
Q 043654 320 DDNTCPICLAEYKPKETLKTI---PECTHCFHADCVDEWLRL---------NATCPVCRNSP 369 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l---~~C~H~FH~~Ci~~wl~~---------~~~CP~CR~~~ 369 (390)
...+|-+|.+++.+.+..+.. +.|+-++|..|+..-+.. ..-||.|++-+
T Consensus 181 ~~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 181 LNVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred cchhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 347999999999666655532 358889999999995422 34699999864
No 157
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=46.14 E-value=47 Score=23.85 Aligned_cols=19 Identities=11% Similarity=0.249 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHhhhh
Q 043654 246 AGVPTMLCLLGLACIICAK 264 (390)
Q Consensus 246 ~~i~~~l~~~~i~~~i~~~ 264 (390)
-+++++++++.+.++++..
T Consensus 4 d~iLi~ICVaii~lIlY~i 22 (68)
T PF05961_consen 4 DFILIIICVAIIGLILYGI 22 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444555554454444
No 158
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=45.53 E-value=42 Score=35.07 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=6.9
Q ss_pred eehhhhhhHHHHH
Q 043654 239 RIAIMVGAGVPTM 251 (390)
Q Consensus 239 ~~~i~i~~~i~~~ 251 (390)
..||++|+++.++
T Consensus 268 NlWII~gVlvPv~ 280 (684)
T PF12877_consen 268 NLWIIAGVLVPVL 280 (684)
T ss_pred CeEEEehHhHHHH
Confidence 3555566555444
No 159
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=45.45 E-value=7 Score=36.90 Aligned_cols=21 Identities=19% Similarity=0.479 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhh
Q 043654 244 VGAGVPTMLCLLGLACIICAK 264 (390)
Q Consensus 244 i~~~i~~~l~~~~i~~~i~~~ 264 (390)
.+++++++++++++++++++|
T Consensus 151 paVVI~~iLLIA~iIa~icyr 171 (290)
T PF05454_consen 151 PAVVIAAILLIAGIIACICYR 171 (290)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 445555555666666666665
No 160
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=45.20 E-value=21 Score=24.24 Aligned_cols=40 Identities=18% Similarity=0.392 Sum_probs=26.9
Q ss_pred ccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCCC
Q 043654 324 CPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARLP 373 (390)
Q Consensus 324 C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~ 373 (390)
|+-|-+.+...+.+... -+..||.+| ..|-.|++++....
T Consensus 1 C~~C~~~I~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKA--MGKFWHPEC--------FKCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSEEEEE--TTEEEETTT--------SBETTTTCBTTTSS
T ss_pred CCCCCCCccCcEEEEEe--CCcEEEccc--------cccCCCCCccCCCe
Confidence 66777777755544322 577888876 56888888776554
No 161
>PHA03265 envelope glycoprotein D; Provisional
Probab=43.99 E-value=15 Score=35.31 Aligned_cols=26 Identities=15% Similarity=0.278 Sum_probs=17.3
Q ss_pred eehhhhhhHHHHHHHHHHHHHHhhhh
Q 043654 239 RIAIMVGAGVPTMLCLLGLACIICAK 264 (390)
Q Consensus 239 ~~~i~i~~~i~~~l~~~~i~~~i~~~ 264 (390)
.+.+++|.++++++++-+|+.++|.|
T Consensus 349 ~~g~~ig~~i~glv~vg~il~~~~rr 374 (402)
T PHA03265 349 FVGISVGLGIAGLVLVGVILYVCLRR 374 (402)
T ss_pred ccceEEccchhhhhhhhHHHHHHhhh
Confidence 46667777777776666666665554
No 162
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=43.60 E-value=48 Score=22.94 Aligned_cols=47 Identities=32% Similarity=0.740 Sum_probs=34.8
Q ss_pred CcccccccccCCCC-cEEEcCCCC--CcccHhhHHHHHhCCCCCcccCCcCCCCC
Q 043654 322 NTCPICLAEYKPKE-TLKTIPECT--HCFHADCVDEWLRLNATCPVCRNSPARLP 373 (390)
Q Consensus 322 ~~C~ICl~~~~~~~-~~~~l~~C~--H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~ 373 (390)
..|-.|-.++..+. ..++ |. ..|+.+|.+.-| +..||.|-..+...+
T Consensus 6 pnCE~C~~dLp~~s~~A~I---CSfECTFC~~C~e~~l--~~~CPNCgGelv~RP 55 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYI---CSFECTFCADCAETML--NGVCPNCGGELVRRP 55 (57)
T ss_pred CCccccCCCCCCCCCcceE---EeEeCcccHHHHHHHh--cCcCcCCCCccccCC
Confidence 46777888887665 3332 54 579999999987 778999988776544
No 163
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=42.93 E-value=25 Score=42.17 Aligned_cols=19 Identities=21% Similarity=0.343 Sum_probs=12.0
Q ss_pred CCeeeeccCCcceeEeeccCCC
Q 043654 211 GGRCGFKNNSSTEIGCLSLHHR 232 (390)
Q Consensus 211 gG~Cg~~~~~~~~f~C~~~~~~ 232 (390)
||+|-.--. . |.|.|.+..
T Consensus 3953 gg~C~n~~g--s-f~CncT~g~ 3971 (4289)
T KOG1219|consen 3953 GGQCINIPG--S-FHCNCTPGI 3971 (4289)
T ss_pred CceeeccCC--c-eEeccChhH
Confidence 667753322 2 899998755
No 164
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=42.85 E-value=22 Score=27.65 Aligned_cols=12 Identities=8% Similarity=0.052 Sum_probs=6.0
Q ss_pred CcchhHHHHHHH
Q 043654 1 MHIFKLSFIIVV 12 (390)
Q Consensus 1 m~~~~~~~~~~~ 12 (390)
|.+..++||.++
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 665554444333
No 165
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.40 E-value=15 Score=37.05 Aligned_cols=38 Identities=29% Similarity=0.636 Sum_probs=30.7
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL 358 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~ 358 (390)
......|-||.+.+.. .+..+. |+|.|+..|....+..
T Consensus 67 ~~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred CCccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 3457899999999875 445555 9999999999999855
No 166
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=42.18 E-value=17 Score=34.60 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=10.4
Q ss_pred ehhhhhhHHHHHHHHHHHHHHhhhh
Q 043654 240 IAIMVGAGVPTMLCLLGLACIICAK 264 (390)
Q Consensus 240 ~~i~i~~~i~~~l~~~~i~~~i~~~ 264 (390)
+-|++|+++++++++ +++.+++.|
T Consensus 273 vPIaVG~~La~lvli-vLiaYli~R 296 (306)
T PF01299_consen 273 VPIAVGAALAGLVLI-VLIAYLIGR 296 (306)
T ss_pred HHHHHHHHHHHHHHH-HHHhheeEe
Confidence 444455555444333 333444443
No 167
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=40.87 E-value=16 Score=33.55 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=32.6
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCC--CCCccc
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLN--ATCPVC 365 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~--~~CP~C 365 (390)
...|||=...+..+ .+..+|||+|-++=|...+... -.||+=
T Consensus 176 s~rdPis~~~I~nP---viSkkC~HvydrDsI~~~l~~~~~i~CPv~ 219 (262)
T KOG2979|consen 176 SNRDPISKKPIVNP---VISKKCGHVYDRDSIMQILCDEITIRCPVL 219 (262)
T ss_pred cccCchhhhhhhch---hhhcCcCcchhhhhHHHHhccCceeecccc
Confidence 57899988887765 3344699999999999999774 458873
No 168
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.79 E-value=19 Score=35.60 Aligned_cols=44 Identities=30% Similarity=0.565 Sum_probs=33.4
Q ss_pred CCcccccccccCCCC--cEEEcCCCCCcccHhhHHHHHhCCCCCccc
Q 043654 321 DNTCPICLAEYKPKE--TLKTIPECTHCFHADCVDEWLRLNATCPVC 365 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~--~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~C 365 (390)
-..|++|.-.++..+ ...+-. |+|.|+..|..+|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 568999987665444 445555 99999999999998888877444
No 169
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=40.76 E-value=19 Score=38.31 Aligned_cols=50 Identities=14% Similarity=0.343 Sum_probs=35.2
Q ss_pred CCCcccccccccCCCC---cEEEcCCCCCcccHhhHHHHHhC------CCCCcccCCcC
Q 043654 320 DDNTCPICLAEYKPKE---TLKTIPECTHCFHADCVDEWLRL------NATCPVCRNSP 369 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~---~~~~l~~C~H~FH~~Ci~~wl~~------~~~CP~CR~~~ 369 (390)
....|.||.-++..++ .+-.+..|+|.|+..||..|+.+ +-.|++|.+-+
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 4577888888887733 22222359999999999999743 33588887754
No 170
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=40.71 E-value=21 Score=34.09 Aligned_cols=51 Identities=24% Similarity=0.550 Sum_probs=37.8
Q ss_pred CCCcccccccccCCCC-cEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCC
Q 043654 320 DDNTCPICLAEYKPKE-TLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPAR 371 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~-~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~ 371 (390)
....|+||-+.....+ ...-.| |+|..|..|...-...+.+||.||++...
T Consensus 248 v~~s~p~~~~~~~~~d~~~lP~~-~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLTDSNFLPCP-CGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred cCCCCCCCCCccccccccccccc-ccccchhhhhhcccccCCCCCccCCcccc
Confidence 3578999999875433 333344 88888888887777888999999987543
No 171
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=40.61 E-value=16 Score=26.06 Aligned_cols=12 Identities=33% Similarity=1.088 Sum_probs=8.6
Q ss_pred cccHhhHHHHHh
Q 043654 346 CFHADCVDEWLR 357 (390)
Q Consensus 346 ~FH~~Ci~~wl~ 357 (390)
-||+.|+..|++
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999984
No 172
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=40.59 E-value=49 Score=31.17 Aligned_cols=13 Identities=46% Similarity=0.353 Sum_probs=6.4
Q ss_pred HHHHHHHHHhhhh
Q 043654 252 LCLLGLACIICAK 264 (390)
Q Consensus 252 l~~~~i~~~i~~~ 264 (390)
+++++++.++..+
T Consensus 241 v~ll~l~Gii~~~ 253 (281)
T PF12768_consen 241 VFLLVLIGIILAY 253 (281)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555544
No 173
>PF15102 TMEM154: TMEM154 protein family
Probab=40.06 E-value=24 Score=29.62 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=9.2
Q ss_pred ehhhhhhHHHHHHHHHHHHHHhhh
Q 043654 240 IAIMVGAGVPTMLCLLGLACIICA 263 (390)
Q Consensus 240 ~~i~i~~~i~~~l~~~~i~~~i~~ 263 (390)
++|+|..+++++++++++++++++
T Consensus 59 LmIlIP~VLLvlLLl~vV~lv~~~ 82 (146)
T PF15102_consen 59 LMILIPLVLLVLLLLSVVCLVIYY 82 (146)
T ss_pred EEEeHHHHHHHHHHHHHHHheeEE
Confidence 344444333333333333333333
No 174
>PHA03049 IMV membrane protein; Provisional
Probab=39.95 E-value=61 Score=23.19 Aligned_cols=18 Identities=11% Similarity=0.353 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 043654 247 GVPTMLCLLGLACIICAK 264 (390)
Q Consensus 247 ~i~~~l~~~~i~~~i~~~ 264 (390)
+++++++++.+.++++..
T Consensus 5 ~~l~iICVaIi~lIvYgi 22 (68)
T PHA03049 5 IILVIICVVIIGLIVYGI 22 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 175
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=39.15 E-value=28 Score=37.25 Aligned_cols=12 Identities=33% Similarity=0.825 Sum_probs=9.4
Q ss_pred CCceecceeeCC
Q 043654 38 EPWIRFPFRITT 49 (390)
Q Consensus 38 ~~~I~yPF~~~~ 49 (390)
.+.|.+||.++.
T Consensus 40 ~~~l~~~yrlg~ 51 (807)
T PF10577_consen 40 VVLLKFPYRLGT 51 (807)
T ss_pred eEEEEEeccCCC
Confidence 678999998763
No 176
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=38.04 E-value=20 Score=21.77 Aligned_cols=20 Identities=25% Similarity=0.670 Sum_probs=12.2
Q ss_pred CCCcccHhhHHHHHhCCCCCcccCCc
Q 043654 343 CTHCFHADCVDEWLRLNATCPVCRNS 368 (390)
Q Consensus 343 C~H~FH~~Ci~~wl~~~~~CP~CR~~ 368 (390)
|||++-..- ....||+|.++
T Consensus 7 CGy~y~~~~------~~~~CP~Cg~~ 26 (33)
T cd00350 7 CGYIYDGEE------APWVCPVCGAP 26 (33)
T ss_pred CCCEECCCc------CCCcCcCCCCc
Confidence 666654432 35579999764
No 177
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=37.99 E-value=38 Score=26.43 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhhhhccC
Q 043654 247 GVPTMLCLLGLACIICAKLNS 267 (390)
Q Consensus 247 ~i~~~l~~~~i~~~i~~~~r~ 267 (390)
+++.+++++++-+-+|++++-
T Consensus 28 l~~SlLIalaaKC~~~~k~~~ 48 (102)
T PF15176_consen 28 LVTSLLIALAAKCPVWYKYLA 48 (102)
T ss_pred HHHHHHHHHHHHhHHHHHHHh
Confidence 333445555555556666544
No 178
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=36.94 E-value=40 Score=29.32 Aligned_cols=25 Identities=12% Similarity=0.454 Sum_probs=10.6
Q ss_pred ceehhhhhhHHHHHHHHHHHHHHhhh
Q 043654 238 ARIAIMVGAGVPTMLCLLGLACIICA 263 (390)
Q Consensus 238 ~~~~i~i~~~i~~~l~~~~i~~~i~~ 263 (390)
..+.|+++++++ ++++++++...++
T Consensus 80 iivgvi~~Vi~I-v~~Iv~~~Cc~c~ 104 (179)
T PF13908_consen 80 IIVGVICGVIAI-VVLIVCFCCCCCC 104 (179)
T ss_pred eeeehhhHHHHH-HHhHhhheecccc
Confidence 344444444433 3444444433333
No 179
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=36.70 E-value=68 Score=25.51 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=9.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhh
Q 043654 243 MVGAGVPTMLCLLGLACIICAK 264 (390)
Q Consensus 243 ~i~~~i~~~l~~~~i~~~i~~~ 264 (390)
+++++.+++++++++-+..|.+
T Consensus 3 Ll~il~llLll~l~asl~~wr~ 24 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLLAWRM 24 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 180
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=36.34 E-value=18 Score=30.57 Aligned_cols=32 Identities=9% Similarity=0.016 Sum_probs=16.5
Q ss_pred CCCccceehhhhhhHHHHHHHHHHHHHHhhhh
Q 043654 233 EIPKAARIAIMVGAGVPTMLCLLGLACIICAK 264 (390)
Q Consensus 233 ~~~~~~~~~i~i~~~i~~~l~~~~i~~~i~~~ 264 (390)
|.+...+-+++-.+..+++.+++++++++|+.
T Consensus 42 GlS~knknIVIGvVVGVGg~ill~il~lvf~~ 73 (154)
T PF04478_consen 42 GLSSKNKNIVIGVVVGVGGPILLGILALVFIF 73 (154)
T ss_pred CCCcCCccEEEEEEecccHHHHHHHHHhheeE
Confidence 33444444544344445566666666555443
No 181
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=36.26 E-value=19 Score=22.46 Aligned_cols=26 Identities=35% Similarity=0.862 Sum_probs=16.0
Q ss_pred CcccccccccCCCCc--------EEEcCCCCCccc
Q 043654 322 NTCPICLAEYKPKET--------LKTIPECTHCFH 348 (390)
Q Consensus 322 ~~C~ICl~~~~~~~~--------~~~l~~C~H~FH 348 (390)
.+|+=|...|.-+++ ++ -++|+|+|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~-C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVR-CSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEE-CCCCCCEeC
Confidence 367778777765442 22 335888875
No 182
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=36.14 E-value=28 Score=23.66 Aligned_cols=35 Identities=14% Similarity=0.417 Sum_probs=25.4
Q ss_pred CcccccccccCCCCcEEEcCCCCCcccHhhHHHHH
Q 043654 322 NTCPICLAEYKPKETLKTIPECTHCFHADCVDEWL 356 (390)
Q Consensus 322 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl 356 (390)
..|.+|-..|..-..-..-..||++|+..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 57899988887644333344699999999987654
No 183
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PTZ00045 apical membrane antigen 1; Provisional
Probab=35.44 E-value=44 Score=34.42 Aligned_cols=45 Identities=29% Similarity=0.495 Sum_probs=22.8
Q ss_pred CCc--cccCCCCeeeeccCCc----ceeEeeccCCCCCCccceehhhhhhH
Q 043654 203 QCG--DCEKGGGRCGFKNNSS----TEIGCLSLHHREIPKAARIAIMVGAG 247 (390)
Q Consensus 203 ~C~--~C~~sgG~Cg~~~~~~----~~f~C~~~~~~~~~~~~~~~i~i~~~ 247 (390)
.|. .|+..+.+||.-.+.. .+|.|.............+++++++.
T Consensus 473 ~C~~yvc~~~~~sc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iia~~ 523 (595)
T PTZ00045 473 TCSFYVCERVEKSCGVKENNEVVVKEEFKCTYENILEDKKKRILIIIIAAT 523 (595)
T ss_pred ccceeEeeeeecccceeeccceeccchhhhhhhhcccccccceehhHHHHH
Confidence 455 3787778887543321 34777765533333333333333333
No 185
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=35.05 E-value=43 Score=31.93 Aligned_cols=61 Identities=21% Similarity=0.468 Sum_probs=39.5
Q ss_pred CCceeeccCCCCCCCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHH-hCCCCCcccCC
Q 043654 305 YPKIVLGESRRLPKPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWL-RLNATCPVCRN 367 (390)
Q Consensus 305 ~p~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl-~~~~~CP~CR~ 367 (390)
+|...+.+...........|-.|.++.......+--. |.|.|+.+| |..+ ..-..||-|..
T Consensus 314 ~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~-Ck~~FCldC-Dv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 314 FPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRCES-CKNVFCLDC-DVFIHESLHNCPGCEH 375 (378)
T ss_pred cCCcchhhccccccCCCcceeeeccccCCCCcEEchh-ccceeeccc-hHHHHhhhhcCCCcCC
Confidence 3444444433333344556999988887766666555 999999999 4444 33356999974
No 186
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=35.03 E-value=89 Score=23.77 Aligned_cols=7 Identities=29% Similarity=0.814 Sum_probs=3.0
Q ss_pred HHHhhhh
Q 043654 258 ACIICAK 264 (390)
Q Consensus 258 ~~~i~~~ 264 (390)
+.++|++
T Consensus 50 lwfvCC~ 56 (94)
T PF05393_consen 50 LWFVCCK 56 (94)
T ss_pred HHHHHHH
Confidence 3334444
No 187
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.92 E-value=49 Score=24.11 Aligned_cols=52 Identities=29% Similarity=0.603 Sum_probs=34.3
Q ss_pred cccccccccCCCCc-EEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCCCCCcc
Q 043654 323 TCPICLAEYKPKET-LKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARLPPLPA 377 (390)
Q Consensus 323 ~C~ICl~~~~~~~~-~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~~~~~ 377 (390)
.|--|-.++-.+.. .++-. =.|.|+.+|.+.-| +..||.|-..+...+..|+
T Consensus 7 nCECCDrDLpp~s~dA~ICt-fEcTFCadCae~~l--~g~CPnCGGelv~RP~RPa 59 (84)
T COG3813 7 NCECCDRDLPPDSTDARICT-FECTFCADCAENRL--HGLCPNCGGELVARPIRPA 59 (84)
T ss_pred CCcccCCCCCCCCCceeEEE-EeeehhHhHHHHhh--cCcCCCCCchhhcCcCChH
Confidence 45556666654432 22222 24899999998755 6789999888876666554
No 188
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=33.81 E-value=57 Score=27.36 Aligned_cols=27 Identities=11% Similarity=0.233 Sum_probs=13.6
Q ss_pred cceehhhhhhHHHHHHHHHHHHHHhhh
Q 043654 237 AARIAIMVGAGVPTMLCLLGLACIICA 263 (390)
Q Consensus 237 ~~~~~i~i~~~i~~~l~~~~i~~~i~~ 263 (390)
..+.++++.+.++++++++.|.++-++
T Consensus 118 ~nklilaisvtvv~~iliii~CLiei~ 144 (154)
T PF14914_consen 118 NNKLILAISVTVVVMILIIIFCLIEIC 144 (154)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666665544444444444333
No 189
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=32.52 E-value=40 Score=19.82 Aligned_cols=29 Identities=21% Similarity=0.495 Sum_probs=10.2
Q ss_pred cccccccccCCCCcEEEcCCCCCcccHhhH
Q 043654 323 TCPICLAEYKPKETLKTIPECTHCFHADCV 352 (390)
Q Consensus 323 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci 352 (390)
.|.+|.+.... +..-.-+.|.-.+|.+|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 57888888765 333333459999999985
No 190
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=31.18 E-value=24 Score=24.77 Aligned_cols=13 Identities=23% Similarity=0.899 Sum_probs=9.6
Q ss_pred CCCCcccCCcCCC
Q 043654 359 NATCPVCRNSPAR 371 (390)
Q Consensus 359 ~~~CP~CR~~~~~ 371 (390)
...||+|.++...
T Consensus 39 ~p~CPlC~s~M~~ 51 (59)
T PF14169_consen 39 EPVCPLCKSPMVS 51 (59)
T ss_pred CccCCCcCCcccc
Confidence 3579999987643
No 191
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=30.28 E-value=17 Score=35.55 Aligned_cols=51 Identities=25% Similarity=0.569 Sum_probs=0.0
Q ss_pred CCCcccccccccCC-----C-----------CcEEEcCCCCCcccHhhHHHHHhC---------CCCCcccCCcCCC
Q 043654 320 DDNTCPICLAEYKP-----K-----------ETLKTIPECTHCFHADCVDEWLRL---------NATCPVCRNSPAR 371 (390)
Q Consensus 320 ~~~~C~ICl~~~~~-----~-----------~~~~~l~~C~H~FH~~Ci~~wl~~---------~~~CP~CR~~~~~ 371 (390)
...+||+|+..=.. + -...--| |||+--.+...-|-+. +..||.|-.++..
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 37899999975210 0 1122356 9999999999999643 3579999888763
No 192
>PF15069 FAM163: FAM163 family
Probab=30.22 E-value=37 Score=28.33 Aligned_cols=8 Identities=38% Similarity=1.182 Sum_probs=4.7
Q ss_pred CCCccccc
Q 043654 320 DDNTCPIC 327 (390)
Q Consensus 320 ~~~~C~IC 327 (390)
...-|+-|
T Consensus 90 ~~~~CptC 97 (143)
T PF15069_consen 90 ARSYCPTC 97 (143)
T ss_pred CCCcCCCC
Confidence 34566666
No 193
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=30.10 E-value=57 Score=23.00 Aligned_cols=12 Identities=17% Similarity=0.066 Sum_probs=4.7
Q ss_pred HHHHHHHHhhhh
Q 043654 253 CLLGLACIICAK 264 (390)
Q Consensus 253 ~~~~i~~~i~~~ 264 (390)
+.+.++.++++.
T Consensus 18 ~~l~fiavi~~a 29 (60)
T COG4736 18 FTLFFIAVIYFA 29 (60)
T ss_pred HHHHHHHHHHHH
Confidence 333333444443
No 194
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=29.60 E-value=22 Score=24.52 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=22.0
Q ss_pred CcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCCCCCc
Q 043654 322 NTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARLPPLP 376 (390)
Q Consensus 322 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~~~~ 376 (390)
.+|+.|-+++.-.+..+ ..--.||.|.+.+.-...-|
T Consensus 3 ~~CP~CG~~iev~~~~~------------------GeiV~Cp~CGaeleVv~~~p 39 (54)
T TIGR01206 3 FECPDCGAEIELENPEL------------------GELVICDECGAELEVVSLDP 39 (54)
T ss_pred cCCCCCCCEEecCCCcc------------------CCEEeCCCCCCEEEEEeCCC
Confidence 47889988776543222 11236999999864443333
No 195
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=28.96 E-value=18 Score=36.34 Aligned_cols=6 Identities=17% Similarity=0.434 Sum_probs=3.1
Q ss_pred CCCCee
Q 043654 165 SSSCRF 170 (390)
Q Consensus 165 ~~~C~~ 170 (390)
+..|-.
T Consensus 247 ~~~C~~ 252 (439)
T PF02480_consen 247 PRRCPS 252 (439)
T ss_dssp TTTTEE
T ss_pred cCCCCc
Confidence 556643
No 196
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=28.92 E-value=50 Score=23.87 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=12.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhcc
Q 043654 241 AIMVGAGVPTMLCLLGLACIICAKLN 266 (390)
Q Consensus 241 ~i~i~~~i~~~l~~~~i~~~i~~~~r 266 (390)
+.+|+++..+++-++.++.=++.++|
T Consensus 33 W~aIGvi~gi~~~~lt~ltN~YFK~k 58 (68)
T PF04971_consen 33 WAAIGVIGGIFFGLLTYLTNLYFKIK 58 (68)
T ss_pred chhHHHHHHHHHHHHHHHhHhhhhhh
Confidence 44555555444444444444555433
No 197
>PTZ00046 rifin; Provisional
Probab=28.80 E-value=53 Score=31.95 Aligned_cols=8 Identities=0% Similarity=0.102 Sum_probs=3.2
Q ss_pred HHHHhhhh
Q 043654 257 LACIICAK 264 (390)
Q Consensus 257 i~~~i~~~ 264 (390)
+++++..|
T Consensus 332 vIIYLILR 339 (358)
T PTZ00046 332 VIIYLILR 339 (358)
T ss_pred HHHHHHHH
Confidence 33333444
No 198
>PHA02902 putative IMV membrane protein; Provisional
Probab=28.49 E-value=1.9e+02 Score=20.56 Aligned_cols=10 Identities=20% Similarity=0.282 Sum_probs=4.7
Q ss_pred CCChhhhhcC
Q 043654 296 GLDGPTIESY 305 (390)
Q Consensus 296 ~~~~~~~~~~ 305 (390)
.++.+.++.+
T Consensus 53 ~lTpDQirAl 62 (70)
T PHA02902 53 SLTPDQIKAL 62 (70)
T ss_pred cCCHHHHHHH
Confidence 3455554443
No 199
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=28.45 E-value=77 Score=29.89 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=20.6
Q ss_pred ehhhhhhHHHHHHHHHHHHHHhhhhcc
Q 043654 240 IAIMVGAGVPTMLCLLGLACIICAKLN 266 (390)
Q Consensus 240 ~~i~i~~~i~~~l~~~~i~~~i~~~~r 266 (390)
+.+++++++++++.++++++....|+|
T Consensus 232 IslAiALG~v~ll~l~Gii~~~~~r~~ 258 (281)
T PF12768_consen 232 ISLAIALGTVFLLVLIGIILAYIRRRR 258 (281)
T ss_pred EehHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 556667777888888888888888843
No 200
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=28.40 E-value=54 Score=31.79 Aligned_cols=8 Identities=0% Similarity=0.102 Sum_probs=3.1
Q ss_pred HHHHhhhh
Q 043654 257 LACIICAK 264 (390)
Q Consensus 257 i~~~i~~~ 264 (390)
+++++..|
T Consensus 327 vIIYLILR 334 (353)
T TIGR01477 327 VIIYLILR 334 (353)
T ss_pred HHHHHHHH
Confidence 33333344
No 201
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=28.35 E-value=42 Score=26.34 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=28.6
Q ss_pred CcccccccccCCCCcEEEcCCCCCcccHhhHHHHHh
Q 043654 322 NTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLR 357 (390)
Q Consensus 322 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~ 357 (390)
-.|.||-+++..|+....+.+ -.-|.+|+.+=..
T Consensus 3 WkC~iCg~~I~~gqlFTF~~k--G~VH~~C~~~~~~ 36 (101)
T PF09943_consen 3 WKCYICGKPIYEGQLFTFTKK--GPVHYECFREKAS 36 (101)
T ss_pred eEEEecCCeeeecceEEEecC--CcEeHHHHHHHHh
Confidence 369999999999999888885 5779999988653
No 202
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=27.93 E-value=49 Score=23.57 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=26.4
Q ss_pred CCcccccccccCC--CCcEEEcCCCCCcccHhhHHHH
Q 043654 321 DNTCPICLAEYKP--KETLKTIPECTHCFHADCVDEW 355 (390)
Q Consensus 321 ~~~C~ICl~~~~~--~~~~~~l~~C~H~FH~~Ci~~w 355 (390)
...|+.|-..... ......-+.||+.+|++-...+
T Consensus 28 Sq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~naA~ 64 (69)
T PF07282_consen 28 SQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNAAR 64 (69)
T ss_pred ccCccCcccccccccccceEEcCCCCCEECcHHHHHH
Confidence 4689999998877 4556667779999998765544
No 203
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=27.90 E-value=47 Score=30.77 Aligned_cols=43 Identities=23% Similarity=0.427 Sum_probs=27.9
Q ss_pred CCcccccccccCCCCcEEEcCCCC-CcccHhhHHHH-HhCCCCCc
Q 043654 321 DNTCPICLAEYKPKETLKTIPECT-HCFHADCVDEW-LRLNATCP 363 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~-H~FH~~Ci~~w-l~~~~~CP 363 (390)
-.-|.||+|---++-.-.-|+.=. =.=|++|++.| |..+..||
T Consensus 30 LsfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~p 74 (285)
T PF06937_consen 30 LSFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCP 74 (285)
T ss_pred eeecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCC
Confidence 467899988765553222222111 14689999999 66788898
No 204
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=27.23 E-value=41 Score=31.88 Aligned_cols=46 Identities=15% Similarity=0.366 Sum_probs=33.9
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCC---CCCcccC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLN---ATCPVCR 366 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~---~~CP~CR 366 (390)
.-..||+=-+.-.+...-..+. |||+.-.+-++..-+.. ..||.|-
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred ceeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 3578998776655555556666 99999999999876553 4599993
No 205
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=26.99 E-value=1.8e+02 Score=21.83 Aligned_cols=15 Identities=7% Similarity=0.317 Sum_probs=9.2
Q ss_pred CCChhhhhcCCceee
Q 043654 296 GLDGPTIESYPKIVL 310 (390)
Q Consensus 296 ~~~~~~~~~~p~~~~ 310 (390)
.++.+.++.+..+..
T Consensus 51 ~lTpDQVrAlHRlvT 65 (92)
T PHA02681 51 KMTDDQVRAFHALVT 65 (92)
T ss_pred cCCHHHHHHHHHHHh
Confidence 567777776655443
No 206
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=26.75 E-value=42 Score=25.82 Aligned_cols=8 Identities=25% Similarity=0.849 Sum_probs=3.9
Q ss_pred HHHHhhhh
Q 043654 257 LACIICAK 264 (390)
Q Consensus 257 i~~~i~~~ 264 (390)
+.++++++
T Consensus 58 i~Lv~CC~ 65 (98)
T PF07204_consen 58 IALVCCCR 65 (98)
T ss_pred HHHHHHhh
Confidence 44444554
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=26.70 E-value=35 Score=35.79 Aligned_cols=33 Identities=27% Similarity=0.656 Sum_probs=21.6
Q ss_pred EEcCCCCCcccHhhHHHHHhCCCCCcccCCcCC
Q 043654 338 KTIPECTHCFHADCVDEWLRLNATCPVCRNSPA 370 (390)
Q Consensus 338 ~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~ 370 (390)
...|.|.-+||.+=++--..++..||.||++..
T Consensus 1045 t~Cp~C~~~F~~eDFEl~vLqKGHCPFCrTS~d 1077 (1081)
T KOG1538|consen 1045 TMCPSCFQMFHSEDFELLVLQKGHCPFCRTSKD 1077 (1081)
T ss_pred hhCchHHhhhccchhhHHHHhcCCCCccccccc
Confidence 344566677777766666666677777777544
No 208
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=26.31 E-value=66 Score=30.63 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=18.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhcc
Q 043654 241 AIMVGAGVPTMLCLLGLACIICAKLN 266 (390)
Q Consensus 241 ~i~i~~~i~~~l~~~~i~~~i~~~~r 266 (390)
-+++.|++.++|..+++++++.+.+.
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaYli~ 295 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAYLIG 295 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhheeE
Confidence 46777777777777777777777754
No 209
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.75 E-value=58 Score=29.81 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=28.4
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHH
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWL 356 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl 356 (390)
...-+.|..||..+.++ .+.| =||+|.++||-+.+
T Consensus 40 iK~FdcCsLtLqPc~dP---vit~-~GylfdrEaILe~i 74 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDP---VITP-DGYLFDREAILEYI 74 (303)
T ss_pred cCCcceeeeecccccCC---ccCC-CCeeeeHHHHHHHH
Confidence 34568899999998877 3444 79999999999986
No 210
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=25.23 E-value=13 Score=35.07 Aligned_cols=38 Identities=26% Similarity=0.578 Sum_probs=30.8
Q ss_pred CcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCC
Q 043654 322 NTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNA 360 (390)
Q Consensus 322 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~ 360 (390)
.+|.+|+++|..+......- |.-+||..|+-.|+....
T Consensus 215 rvC~~CF~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDRED-SLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred eecHHHHHHHhcccccchhh-cccccccccccccccccc
Confidence 49999999998766666665 666999999999986643
No 211
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=25.23 E-value=24 Score=24.05 Aligned_cols=11 Identities=27% Similarity=0.890 Sum_probs=5.7
Q ss_pred CCcccCCcCCC
Q 043654 361 TCPVCRNSPAR 371 (390)
Q Consensus 361 ~CP~CR~~~~~ 371 (390)
.||+|.+++..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 79999988753
No 212
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=24.72 E-value=84 Score=20.87 Aligned_cols=10 Identities=10% Similarity=0.311 Sum_probs=3.8
Q ss_pred HHHHHHHHhh
Q 043654 253 CLLGLACIIC 262 (390)
Q Consensus 253 ~~~~i~~~i~ 262 (390)
++++++.+.+
T Consensus 21 ~F~gi~~w~~ 30 (49)
T PF05545_consen 21 FFIGIVIWAY 30 (49)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 213
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=23.75 E-value=24 Score=25.73 Aligned_cols=41 Identities=29% Similarity=0.607 Sum_probs=19.1
Q ss_pred CcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCC
Q 043654 322 NTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPAR 371 (390)
Q Consensus 322 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~ 371 (390)
..||.|..++.... +|.++..|-.. ++....||-|..++..
T Consensus 2 ~~CP~C~~~L~~~~--------~~~~C~~C~~~-~~~~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 2 NTCPKCQQELEWQG--------GHYHCEACQKD-YKKEAFCPDCGQPLEV 42 (70)
T ss_dssp -B-SSS-SBEEEET--------TEEEETTT--E-EEEEEE-TTT-SB-EE
T ss_pred CcCCCCCCccEEeC--------CEEECcccccc-ceecccCCCcccHHHH
Confidence 46888888866433 34444445332 2335568888887643
No 214
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=23.30 E-value=60 Score=30.91 Aligned_cols=20 Identities=0% Similarity=0.007 Sum_probs=8.9
Q ss_pred hhHHHHHHHHHHHHHHhhhh
Q 043654 245 GAGVPTMLCLLGLACIICAK 264 (390)
Q Consensus 245 ~~~i~~~l~~~~i~~~i~~~ 264 (390)
++++++++.++.++++-++|
T Consensus 264 aIliIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 264 AILIIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444445554
No 215
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=23.26 E-value=27 Score=24.19 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=15.8
Q ss_pred CcEEEcCCCCCcccHhhHHHH
Q 043654 335 ETLKTIPECTHCFHADCVDEW 355 (390)
Q Consensus 335 ~~~~~l~~C~H~FH~~Ci~~w 355 (390)
.....-+.|+|.|+..|..+|
T Consensus 38 ~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 38 CNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCeeECCCCCCeECCCCCCcC
Confidence 344555459999999998887
No 216
>PRK05978 hypothetical protein; Provisional
Probab=22.00 E-value=56 Score=27.63 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=19.1
Q ss_pred CcccHhhHHHHHhCCCCCcccCCcCCCCC
Q 043654 345 HCFHADCVDEWLRLNATCPVCRNSPARLP 373 (390)
Q Consensus 345 H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~ 373 (390)
|+|+ .+|+-+..||.|-.++....
T Consensus 43 ~LF~-----g~Lkv~~~C~~CG~~~~~~~ 66 (148)
T PRK05978 43 KLFR-----AFLKPVDHCAACGEDFTHHR 66 (148)
T ss_pred cccc-----cccccCCCccccCCccccCC
Confidence 6775 68888999999988876653
No 217
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=21.93 E-value=93 Score=33.12 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=5.0
Q ss_pred CCCCeeeecc
Q 043654 209 KGGGRCGFKN 218 (390)
Q Consensus 209 ~sgG~Cg~~~ 218 (390)
.|||.=+|..
T Consensus 522 eSG~I~rySl 531 (1189)
T KOG2041|consen 522 ESGGIYRYSL 531 (1189)
T ss_pred ccCceEEEEe
Confidence 3455555543
No 218
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=21.68 E-value=2.4e+02 Score=23.71 Aligned_cols=7 Identities=29% Similarity=0.154 Sum_probs=2.6
Q ss_pred ccceehh
Q 043654 236 KAARIAI 242 (390)
Q Consensus 236 ~~~~~~i 242 (390)
+..+..|
T Consensus 60 gtAIaGI 66 (155)
T PF10873_consen 60 GTAIAGI 66 (155)
T ss_pred cceeeee
Confidence 3333333
No 219
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=21.50 E-value=58 Score=22.18 Aligned_cols=24 Identities=38% Similarity=0.911 Sum_probs=13.3
Q ss_pred CCCCCcccHhhHHHHHhCCCCCccc
Q 043654 341 PECTHCFHADCVDEWLRLNATCPVC 365 (390)
Q Consensus 341 ~~C~H~FH~~Ci~~wl~~~~~CP~C 365 (390)
+.|||.|... |..-......||.|
T Consensus 32 ~~Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 32 PKCGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCCCeeEcc-HhhhccCCCCCCCC
Confidence 3466665543 22222456779987
No 220
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=20.57 E-value=33 Score=34.53 Aligned_cols=6 Identities=50% Similarity=1.148 Sum_probs=3.1
Q ss_pred EEecCC
Q 043654 125 FFNCSS 130 (390)
Q Consensus 125 ~~~C~~ 130 (390)
+.||+.
T Consensus 238 y~~C~~ 243 (439)
T PF02480_consen 238 YANCSP 243 (439)
T ss_dssp EEEEBT
T ss_pred hcCCCC
Confidence 346655
No 221
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=20.43 E-value=1e+02 Score=30.56 Aligned_cols=19 Identities=21% Similarity=0.454 Sum_probs=8.0
Q ss_pred hhhhHHHHHHHHHHHHHHh
Q 043654 243 MVGAGVPTMLCLLGLACII 261 (390)
Q Consensus 243 ~i~~~i~~~l~~~~i~~~i 261 (390)
|++|.+++++++.+++-|+
T Consensus 369 IaGIsvavvvvVgglvGfL 387 (397)
T PF03302_consen 369 IAGISVAVVVVVGGLVGFL 387 (397)
T ss_pred eeeeeehhHHHHHHHHHHH
Confidence 3444444444444344333
No 222
>PRK11827 hypothetical protein; Provisional
Probab=20.41 E-value=34 Score=24.11 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=12.9
Q ss_pred HHHHhCCCCCcccCCcCC
Q 043654 353 DEWLRLNATCPVCRNSPA 370 (390)
Q Consensus 353 ~~wl~~~~~CP~CR~~~~ 370 (390)
++||..--.||.|+.++.
T Consensus 2 d~~LLeILaCP~ckg~L~ 19 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLW 19 (60)
T ss_pred ChHHHhheECCCCCCcCe
Confidence 456666677888888764
No 223
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=20.32 E-value=2.8e+02 Score=20.16 Aligned_cols=9 Identities=22% Similarity=0.730 Sum_probs=3.8
Q ss_pred hhhhhHHHH
Q 043654 242 IMVGAGVPT 250 (390)
Q Consensus 242 i~i~~~i~~ 250 (390)
.++|+++.+
T Consensus 8 ~i~Gm~iVF 16 (79)
T PF04277_consen 8 MIIGMGIVF 16 (79)
T ss_pred HHHHHHHHH
Confidence 344444433
No 224
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=20.24 E-value=46 Score=27.82 Aligned_cols=23 Identities=22% Similarity=0.654 Sum_probs=18.2
Q ss_pred EcCCCCCcccHhhHHHHHhCCCCCcccCCcC
Q 043654 339 TIPECTHCFHADCVDEWLRLNATCPVCRNSP 369 (390)
Q Consensus 339 ~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~ 369 (390)
..++|||+|+.. +..||.|.++.
T Consensus 31 kC~~CG~v~~PP--------r~~Cp~C~~~~ 53 (140)
T COG1545 31 KCKKCGRVYFPP--------RAYCPKCGSET 53 (140)
T ss_pred EcCCCCeEEcCC--------cccCCCCCCCC
Confidence 345699999985 77899999874
No 225
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=20.02 E-value=25 Score=22.71 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=13.5
Q ss_pred CCCCcccHhhHHHHHhCCCCCcccCC
Q 043654 342 ECTHCFHADCVDEWLRLNATCPVCRN 367 (390)
Q Consensus 342 ~C~H~FH~~Ci~~wl~~~~~CP~CR~ 367 (390)
.|||.|-..--..= .....||.|.+
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 37776654321110 22456999988
Done!