Query 043654
Match_columns 390
No_of_seqs 320 out of 2338
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 11:54:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043654.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043654hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 4.2E-17 1.4E-21 126.3 8.4 83 287-371 7-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 2.8E-16 9.4E-21 117.1 4.3 70 300-372 4-73 (75)
3 2ep4_A Ring finger protein 24; 99.6 4.3E-15 1.5E-19 110.2 6.3 59 318-377 12-70 (74)
4 1iym_A EL5; ring-H2 finger, ub 99.5 2.5E-15 8.7E-20 104.7 4.2 52 319-370 3-54 (55)
5 2kiz_A E3 ubiquitin-protein li 99.5 9.4E-15 3.2E-19 106.8 6.5 56 318-374 11-66 (69)
6 2ect_A Ring finger protein 126 99.5 1.1E-14 3.8E-19 109.1 6.5 58 318-376 12-69 (78)
7 2ecl_A Ring-box protein 2; RNF 99.5 1.4E-14 4.8E-19 109.4 4.2 52 320-371 14-76 (81)
8 2ecm_A Ring finger and CHY zin 99.4 9E-14 3.1E-18 96.7 4.6 51 319-370 3-54 (55)
9 3ng2_A RNF4, snurf, ring finge 99.4 1.3E-13 4.6E-18 101.1 3.9 56 318-374 7-66 (71)
10 3dpl_R Ring-box protein 1; ubi 99.4 2.9E-13 1E-17 107.1 5.1 50 320-370 36-100 (106)
11 1v87_A Deltex protein 2; ring- 99.4 4E-13 1.4E-17 108.2 5.9 53 320-373 24-96 (114)
12 2ea6_A Ring finger protein 4; 99.4 3.4E-13 1.2E-17 98.3 4.9 53 318-371 12-68 (69)
13 2d8s_A Cellular modulator of i 99.4 7.1E-13 2.4E-17 99.3 5.5 56 318-375 12-74 (80)
14 2xeu_A Ring finger protein 4; 99.3 2.2E-13 7.6E-18 97.7 2.5 53 320-373 2-58 (64)
15 1chc_A Equine herpes virus-1 r 99.3 6E-13 2.1E-17 96.8 4.8 51 319-372 3-53 (68)
16 2djb_A Polycomb group ring fin 99.3 2.8E-12 9.5E-17 94.4 6.0 56 318-376 12-67 (72)
17 2ecn_A Ring finger protein 141 99.3 8.5E-13 2.9E-17 96.6 2.9 53 318-375 12-64 (70)
18 2d8t_A Dactylidin, ring finger 99.3 2E-12 7E-17 94.8 3.5 51 318-372 12-62 (71)
19 4a0k_B E3 ubiquitin-protein li 99.3 4.6E-13 1.6E-17 107.4 -0.0 50 320-370 47-111 (117)
20 2ct2_A Tripartite motif protei 99.2 1.2E-11 4.2E-16 94.5 6.0 54 318-372 12-69 (88)
21 2yur_A Retinoblastoma-binding 99.2 1.4E-11 4.8E-16 91.1 5.7 53 318-373 12-66 (74)
22 2ct0_A Non-SMC element 1 homol 99.2 1.2E-11 4.3E-16 90.5 5.1 51 318-371 12-64 (74)
23 2ecy_A TNF receptor-associated 99.2 1.7E-11 5.7E-16 88.5 5.1 51 318-372 12-63 (66)
24 2csy_A Zinc finger protein 183 99.2 1.6E-11 5.4E-16 92.5 4.9 49 318-370 12-60 (81)
25 2ysl_A Tripartite motif-contai 99.2 2.6E-11 8.8E-16 89.3 5.6 51 318-372 17-70 (73)
26 1g25_A CDK-activating kinase a 99.2 1.9E-11 6.5E-16 87.9 4.4 56 320-376 2-60 (65)
27 4ap4_A E3 ubiquitin ligase RNF 99.2 1.4E-11 4.7E-16 101.6 3.6 56 319-375 5-64 (133)
28 1t1h_A Gspef-atpub14, armadill 99.1 3.9E-11 1.3E-15 89.6 5.0 53 318-374 5-58 (78)
29 2ecw_A Tripartite motif-contai 99.1 1E-10 3.5E-15 88.6 6.6 53 318-374 16-74 (85)
30 4ayc_A E3 ubiquitin-protein li 99.1 2.1E-11 7.1E-16 101.5 3.0 48 321-372 53-100 (138)
31 2ecv_A Tripartite motif-contai 99.1 1.2E-10 4E-15 88.2 6.2 54 318-375 16-75 (85)
32 2ysj_A Tripartite motif-contai 99.1 1.3E-10 4.6E-15 82.9 5.8 44 318-365 17-63 (63)
33 2egp_A Tripartite motif-contai 99.1 3.2E-11 1.1E-15 90.2 2.1 51 318-372 9-66 (79)
34 3lrq_A E3 ubiquitin-protein li 99.1 5.9E-11 2E-15 93.1 3.6 51 320-373 21-72 (100)
35 2y43_A E3 ubiquitin-protein li 99.0 1.3E-10 4.6E-15 90.8 4.3 49 321-372 22-70 (99)
36 2ecj_A Tripartite motif-contai 99.0 1.7E-10 5.7E-15 80.8 4.2 44 318-365 12-58 (58)
37 4ap4_A E3 ubiquitin ligase RNF 99.0 6.7E-11 2.3E-15 97.4 2.1 54 319-373 70-127 (133)
38 2ckl_A Polycomb group ring fin 99.0 2.1E-10 7.3E-15 91.2 4.8 50 320-372 14-63 (108)
39 3ztg_A E3 ubiquitin-protein li 99.0 3.7E-10 1.3E-14 87.0 5.7 50 318-370 10-61 (92)
40 1e4u_A Transcriptional repress 99.0 4.8E-10 1.6E-14 83.4 5.8 59 318-377 8-68 (78)
41 3fl2_A E3 ubiquitin-protein li 99.0 3.8E-10 1.3E-14 92.1 4.9 48 320-371 51-99 (124)
42 2ckl_B Ubiquitin ligase protei 98.9 4.3E-10 1.5E-14 96.4 4.5 49 320-371 53-102 (165)
43 1jm7_A BRCA1, breast cancer ty 98.9 5.4E-10 1.8E-14 89.3 4.6 50 321-374 21-73 (112)
44 3hct_A TNF receptor-associated 98.9 6.4E-10 2.2E-14 89.9 3.2 52 318-373 15-67 (118)
45 2vje_A E3 ubiquitin-protein li 98.9 1E-09 3.6E-14 78.4 3.5 51 318-371 5-57 (64)
46 1z6u_A NP95-like ring finger p 98.9 1.6E-09 5.5E-14 91.3 5.0 49 320-372 77-126 (150)
47 2kre_A Ubiquitin conjugation f 98.8 1.7E-09 5.8E-14 84.5 4.4 54 319-376 27-80 (100)
48 1rmd_A RAG1; V(D)J recombinati 98.8 1.1E-09 3.9E-14 88.1 3.4 49 321-373 23-72 (116)
49 2kr4_A Ubiquitin conjugation f 98.8 1.9E-09 6.5E-14 81.7 4.3 52 319-374 12-63 (85)
50 1bor_A Transcription factor PM 98.8 1.2E-09 4.2E-14 75.9 2.7 48 319-373 4-51 (56)
51 3l11_A E3 ubiquitin-protein li 98.8 6.9E-10 2.4E-14 89.2 1.4 48 319-370 13-61 (115)
52 1wgm_A Ubiquitin conjugation f 98.8 3.9E-09 1.3E-13 82.2 5.2 54 319-376 20-74 (98)
53 2vje_B MDM4 protein; proto-onc 98.7 3.5E-09 1.2E-13 75.4 2.6 51 319-371 5-56 (63)
54 1jm7_B BARD1, BRCA1-associated 98.7 3.6E-09 1.2E-13 85.3 2.4 47 320-372 21-68 (117)
55 2y1n_A E3 ubiquitin-protein li 98.7 7E-09 2.4E-13 99.5 4.7 48 321-372 332-380 (389)
56 3knv_A TNF receptor-associated 98.7 2.8E-09 9.6E-14 88.8 1.4 50 318-371 28-78 (141)
57 3k1l_B Fancl; UBC, ring, RWD, 98.6 6.5E-09 2.2E-13 96.8 2.2 53 318-370 305-372 (381)
58 1vyx_A ORF K3, K3RING; zinc-bi 98.6 2.4E-08 8.1E-13 70.2 4.0 48 319-370 4-58 (60)
59 4ic3_A E3 ubiquitin-protein li 98.6 6.8E-09 2.3E-13 76.5 1.2 43 321-371 24-67 (74)
60 2yu4_A E3 SUMO-protein ligase 98.6 1.6E-08 5.3E-13 78.2 2.1 51 319-372 5-64 (94)
61 3hcs_A TNF receptor-associated 98.5 2.9E-08 9.9E-13 85.4 2.6 52 318-373 15-67 (170)
62 1wim_A KIAA0161 protein; ring 98.5 6.3E-08 2.2E-12 74.7 3.4 49 319-368 3-61 (94)
63 2ea5_A Cell growth regulator w 98.5 1.4E-07 4.7E-12 68.1 4.4 50 318-375 12-62 (68)
64 2c2l_A CHIP, carboxy terminus 98.4 1E-07 3.4E-12 88.4 4.2 54 318-375 205-259 (281)
65 2ecg_A Baculoviral IAP repeat- 98.4 1.1E-07 3.7E-12 70.1 3.1 44 321-372 25-69 (75)
66 2f42_A STIP1 homology and U-bo 98.3 1.7E-07 5.7E-12 80.6 2.8 55 318-376 103-158 (179)
67 2bay_A PRE-mRNA splicing facto 98.2 2.9E-07 9.9E-12 64.8 1.8 53 321-376 3-55 (61)
68 2yho_A E3 ubiquitin-protein li 98.2 4.2E-07 1.4E-11 67.6 2.3 44 321-372 18-62 (79)
69 3htk_C E3 SUMO-protein ligase 98.1 7.7E-07 2.6E-11 80.3 1.9 52 319-373 179-234 (267)
70 3vk6_A E3 ubiquitin-protein li 98.0 3.3E-06 1.1E-10 64.1 4.2 49 323-374 3-52 (101)
71 3t6p_A Baculoviral IAP repeat- 98.0 1.5E-06 5.1E-11 82.8 1.5 44 320-371 294-338 (345)
72 3nw0_A Non-structural maintena 97.6 5.4E-05 1.8E-09 68.2 5.7 50 320-372 179-230 (238)
73 1weo_A Cellulose synthase, cat 95.1 0.098 3.4E-06 38.5 7.4 57 320-376 15-75 (93)
74 2ko5_A Ring finger protein Z; 94.5 0.029 9.9E-07 41.8 3.5 50 319-374 26-76 (99)
75 2lri_C Autoimmune regulator; Z 94.3 0.042 1.5E-06 38.7 3.8 50 318-371 9-62 (66)
76 2jun_A Midline-1; B-BOX, TRIM, 92.6 0.086 2.9E-06 40.2 3.5 35 320-355 2-36 (101)
77 1we9_A PHD finger family prote 89.5 0.12 4E-06 36.0 1.3 50 319-368 4-58 (64)
78 2l5u_A Chromodomain-helicase-D 86.5 0.47 1.6E-05 32.6 2.9 47 318-368 8-58 (61)
79 2l2t_A Receptor tyrosine-prote 85.2 1.1 3.7E-05 28.6 3.8 23 242-264 12-35 (44)
80 2klu_A T-cell surface glycopro 83.8 1.3 4.3E-05 30.6 3.8 20 247-266 16-35 (70)
81 3lqh_A Histone-lysine N-methyl 83.6 0.47 1.6E-05 40.5 2.1 49 321-369 2-64 (183)
82 2jwa_A Receptor tyrosine-prote 83.5 1.1 3.8E-05 28.4 3.3 14 251-264 23-36 (44)
83 2ks1_B Epidermal growth factor 82.5 2.2 7.7E-05 27.1 4.4 12 253-264 25-36 (44)
84 1wil_A KIAA1045 protein; ring 81.0 1.7 6E-05 31.6 3.9 36 318-355 12-47 (89)
85 1f62_A Transcription factor WS 79.9 0.88 3E-05 29.8 2.0 44 323-367 2-49 (51)
86 1mm2_A MI2-beta; PHD, zinc fin 78.9 0.48 1.6E-05 32.6 0.4 48 318-369 6-57 (61)
87 3i2d_A E3 SUMO-protein ligase 77.3 1.9 6.4E-05 40.8 4.0 46 321-369 249-298 (371)
88 2yql_A PHD finger protein 21A; 77.3 0.4 1.4E-05 32.3 -0.4 46 318-367 6-55 (56)
89 2vpb_A Hpygo1, pygopus homolog 77.0 2 6.9E-05 29.8 3.2 35 319-353 6-41 (65)
90 2kgg_A Histone demethylase jar 77.0 2.7 9.1E-05 27.6 3.7 44 323-366 4-52 (52)
91 1xwh_A Autoimmune regulator; P 76.8 0.58 2E-05 32.7 0.4 47 318-368 5-55 (66)
92 1wep_A PHF8; structural genomi 76.7 3.1 0.00011 30.0 4.3 50 319-369 10-64 (79)
93 2k16_A Transcription initiatio 76.3 0.49 1.7E-05 33.9 -0.2 52 319-371 16-71 (75)
94 1fp0_A KAP-1 corepressor; PHD 75.8 1.8 6.2E-05 32.1 2.8 47 318-368 22-72 (88)
95 3o36_A Transcription intermedi 74.4 0.85 2.9E-05 38.8 0.8 46 320-369 3-52 (184)
96 3u5n_A E3 ubiquitin-protein li 72.9 0.94 3.2E-05 39.4 0.7 47 319-369 5-55 (207)
97 2ysm_A Myeloid/lymphoid or mix 72.4 1.2 4.1E-05 34.4 1.2 39 318-357 4-42 (111)
98 3v43_A Histone acetyltransfera 70.6 1.3 4.5E-05 34.4 1.0 46 322-367 62-111 (112)
99 1wem_A Death associated transc 68.7 2.2 7.7E-05 30.4 1.9 48 321-370 16-72 (76)
100 3m62_A Ubiquitin conjugation f 67.2 3.2 0.00011 44.2 3.3 55 318-376 888-943 (968)
101 2cs3_A Protein C14ORF4, MY039 65.8 24 0.00082 25.3 6.6 41 318-358 12-52 (93)
102 2puy_A PHD finger protein 21A; 65.0 1.1 3.7E-05 30.5 -0.5 46 320-369 4-53 (60)
103 2lbm_A Transcriptional regulat 63.5 6.4 0.00022 31.9 3.8 45 319-367 61-116 (142)
104 3v43_A Histone acetyltransfera 62.3 12 0.00041 28.8 5.1 34 320-353 4-42 (112)
105 1wew_A DNA-binding family prot 60.6 2.4 8.1E-05 30.6 0.7 52 319-371 14-75 (78)
106 2zxe_G FXYD10, phospholemman-l 60.4 5.8 0.0002 27.9 2.5 25 243-267 21-45 (74)
107 2lv9_A Histone-lysine N-methyl 60.0 4.3 0.00015 30.6 2.0 47 320-368 27-76 (98)
108 2e6r_A Jumonji/ARID domain-con 59.6 1.2 4E-05 33.4 -1.2 49 319-368 14-66 (92)
109 2yt5_A Metal-response element- 59.3 5.6 0.00019 27.3 2.5 51 319-369 4-62 (66)
110 2ks1_B Epidermal growth factor 59.1 9.6 0.00033 24.1 3.2 23 244-266 13-35 (44)
111 2xb1_A Pygopus homolog 2, B-ce 58.2 6.7 0.00023 29.9 2.9 50 321-370 3-63 (105)
112 2ri7_A Nucleosome-remodeling f 57.5 2.3 8E-05 35.6 0.2 49 319-368 6-59 (174)
113 2k9y_A Ephrin type-A receptor 57.1 7.6 0.00026 23.9 2.5 8 240-247 13-20 (41)
114 1z2q_A LM5-1; membrane protein 56.5 9.7 0.00033 27.7 3.4 37 319-355 19-55 (84)
115 3o70_A PHD finger protein 13; 56.0 2.8 9.6E-05 29.3 0.4 48 318-367 16-66 (68)
116 1wen_A Inhibitor of growth fam 55.9 12 0.00041 26.3 3.7 47 319-370 14-67 (71)
117 3shb_A E3 ubiquitin-protein li 54.7 2 7E-05 30.9 -0.5 44 323-367 28-76 (77)
118 2jp3_A FXYD domain-containing 54.3 5.8 0.0002 27.4 1.7 24 244-267 20-43 (67)
119 1wev_A Riken cDNA 1110020M19; 54.3 1.8 6.3E-05 32.0 -0.9 54 320-373 15-77 (88)
120 2yw8_A RUN and FYVE domain-con 54.1 9.4 0.00032 27.6 3.0 37 319-355 17-53 (82)
121 2kwj_A Zinc finger protein DPF 53.8 11 0.00036 29.2 3.5 34 322-355 2-41 (114)
122 1wee_A PHD finger family prote 52.9 2.6 8.8E-05 29.8 -0.3 49 319-368 14-66 (72)
123 2dj7_A Actin-binding LIM prote 52.8 18 0.00062 25.7 4.4 41 319-370 13-53 (80)
124 2l8s_A Integrin alpha-1; trans 52.5 25 0.00086 23.2 4.5 11 241-251 10-20 (54)
125 1x4u_A Zinc finger, FYVE domai 52.0 12 0.00039 27.2 3.2 37 318-354 11-47 (84)
126 2ro1_A Transcription intermedi 51.6 3.3 0.00011 35.4 0.1 45 321-369 2-50 (189)
127 3t7l_A Zinc finger FYVE domain 51.5 9.7 0.00033 28.1 2.8 36 320-355 19-54 (90)
128 2ku3_A Bromodomain-containing 51.5 19 0.00066 25.2 4.2 50 318-367 13-65 (71)
129 2jo1_A Phospholemman; FXYD1, N 51.2 16 0.00056 25.4 3.6 24 244-267 19-42 (72)
130 1wfk_A Zinc finger, FYVE domai 50.7 16 0.00054 26.8 3.8 51 319-369 7-64 (88)
131 3ql9_A Transcriptional regulat 50.7 19 0.00065 28.5 4.5 46 319-368 55-111 (129)
132 1vfy_A Phosphatidylinositol-3- 50.5 11 0.00039 26.4 2.9 33 322-354 12-44 (73)
133 1joc_A EEA1, early endosomal a 48.8 11 0.00037 29.8 2.8 35 320-354 68-102 (125)
134 1weu_A Inhibitor of growth fam 48.5 8.6 0.00029 28.6 2.0 47 319-370 34-87 (91)
135 4gne_A Histone-lysine N-methyl 47.1 20 0.00068 27.4 4.0 47 318-370 12-64 (107)
136 1y02_A CARP2, FYVE-ring finger 46.4 3.5 0.00012 32.4 -0.4 50 319-368 17-66 (120)
137 1iij_A ERBB-2 receptor protein 46.3 8.1 0.00028 23.2 1.2 22 243-264 11-32 (35)
138 2e6s_A E3 ubiquitin-protein li 45.3 5 0.00017 28.8 0.3 45 322-367 27-76 (77)
139 2cu8_A Cysteine-rich protein 2 44.7 22 0.00076 24.7 3.7 41 321-372 9-49 (76)
140 1zbd_B Rabphilin-3A; G protein 43.6 15 0.00051 29.3 2.9 36 318-353 52-88 (134)
141 1iml_A CRIP, cysteine rich int 42.4 15 0.0005 25.7 2.4 12 322-333 28-39 (76)
142 2l43_A N-teminal domain from h 42.2 26 0.0009 25.6 3.9 52 318-369 22-76 (88)
143 3asl_A E3 ubiquitin-protein li 42.0 5.5 0.00019 28.0 0.1 44 323-367 20-68 (70)
144 1wyh_A SLIM 2, skeletal muscle 41.7 32 0.0011 23.4 4.1 42 321-372 5-46 (72)
145 2ysm_A Myeloid/lymphoid or mix 40.8 4.5 0.00015 31.1 -0.6 45 323-368 56-104 (111)
146 1zfo_A LAsp-1; LIM domain, zin 39.5 7.7 0.00026 22.4 0.4 28 322-352 4-31 (31)
147 1x4l_A Skeletal muscle LIM-pro 39.2 37 0.0013 23.1 4.2 41 321-371 5-47 (72)
148 3c6w_A P28ING5, inhibitor of g 38.3 8.1 0.00028 26.1 0.4 43 320-367 8-57 (59)
149 3mjh_B Early endosome antigen 38.2 6.6 0.00022 23.4 -0.0 16 320-335 4-19 (34)
150 2rsd_A E3 SUMO-protein ligase 38.0 3.5 0.00012 28.7 -1.5 46 321-367 10-64 (68)
151 1dvp_A HRS, hepatocyte growth 37.7 16 0.00056 31.6 2.5 34 321-354 161-194 (220)
152 1x4k_A Skeletal muscle LIM-pro 37.6 25 0.00086 24.0 3.0 42 321-372 5-46 (72)
153 1x61_A Thyroid receptor intera 37.5 42 0.0014 22.8 4.2 40 321-370 5-44 (72)
154 3f6q_B LIM and senescent cell 36.9 22 0.00077 24.1 2.7 43 320-372 10-52 (72)
155 2gmg_A Hypothetical protein PF 36.1 7.9 0.00027 29.5 0.1 27 342-373 72-98 (105)
156 1x63_A Skeletal muscle LIM-pro 35.9 38 0.0013 23.8 3.9 42 321-372 15-56 (82)
157 2co8_A NEDD9 interacting prote 35.8 44 0.0015 23.6 4.2 42 320-372 14-55 (82)
158 2vnf_A ING 4, P29ING4, inhibit 35.4 9.1 0.00031 25.9 0.3 43 320-367 9-58 (60)
159 3zyq_A Hepatocyte growth facto 34.6 20 0.00068 31.3 2.5 35 321-355 164-198 (226)
160 4fo9_A E3 SUMO-protein ligase 33.9 34 0.0011 32.1 4.0 47 321-370 215-265 (360)
161 3o7a_A PHD finger protein 13 v 33.7 6.9 0.00024 25.6 -0.5 41 326-367 8-51 (52)
162 1g47_A Pinch protein; LIM doma 32.6 35 0.0012 23.6 3.2 43 320-372 10-52 (77)
163 2kwj_A Zinc finger protein DPF 32.6 2.9 9.9E-05 32.5 -3.0 45 323-368 60-108 (114)
164 1x68_A FHL5 protein; four-and- 31.4 61 0.0021 22.3 4.3 41 321-371 5-47 (76)
165 2o35_A Hypothetical protein DU 31.3 18 0.00063 27.0 1.4 13 346-358 42-54 (105)
166 2g6q_A Inhibitor of growth pro 31.2 8.7 0.0003 26.2 -0.4 45 320-367 10-59 (62)
167 3fyb_A Protein of unknown func 31.0 19 0.00064 26.9 1.4 12 346-357 41-52 (104)
168 3kqi_A GRC5, PHD finger protei 30.1 11 0.00039 26.6 0.1 47 321-368 10-61 (75)
169 1brz_A Brazzein; sweet protein 29.0 21 0.00071 23.3 1.2 19 209-229 32-50 (54)
170 3ask_A E3 ubiquitin-protein li 28.3 15 0.00053 32.0 0.6 46 322-368 175-225 (226)
171 2d8v_A Zinc finger FYVE domain 26.0 32 0.0011 23.7 1.8 32 319-355 6-38 (67)
172 2d8y_A Eplin protein; LIM doma 25.6 93 0.0032 22.2 4.5 41 321-372 15-55 (91)
173 2cor_A Pinch protein; LIM doma 24.6 1E+02 0.0036 21.4 4.5 41 320-372 14-54 (79)
174 1wd2_A Ariadne-1 protein homol 24.5 10 0.00036 25.6 -0.9 37 321-357 6-46 (60)
175 1z60_A TFIIH basal transcripti 24.2 28 0.00096 23.5 1.2 42 322-365 16-58 (59)
176 2jmo_A Parkin; IBR, E3 ligase, 24.2 14 0.00047 26.5 -0.4 14 342-355 55-68 (80)
177 2pk7_A Uncharacterized protein 24.1 15 0.00052 25.6 -0.2 18 353-370 2-19 (69)
178 2jvx_A NF-kappa-B essential mo 23.3 17 0.00059 20.5 0.0 13 359-371 3-15 (28)
179 2d8x_A Protein pinch; LIM doma 23.3 83 0.0028 21.1 3.7 41 320-372 4-44 (70)
180 2l3k_A Rhombotin-2, linker, LI 23.2 43 0.0015 25.8 2.4 35 320-356 35-69 (123)
181 2jny_A Uncharacterized BCR; st 23.0 13 0.00046 25.8 -0.6 18 353-370 4-21 (67)
182 1a7i_A QCRP2 (LIM1); LIM domai 21.5 36 0.0012 23.9 1.5 41 321-372 7-47 (81)
183 2zet_C Melanophilin; complex, 21.4 47 0.0016 27.0 2.3 34 319-352 66-100 (153)
184 2k1a_A Integrin alpha-IIB; sin 21.1 1.2E+02 0.004 18.9 3.5 11 241-251 11-21 (42)
185 3mpx_A FYVE, rhogef and PH dom 21.1 20 0.0007 34.2 0.0 50 320-369 374-430 (434)
186 3u7u_G Neuregulin 1; signaling 21.0 60 0.002 21.3 2.4 30 204-233 8-43 (55)
187 2d8z_A Four and A half LIM dom 20.5 96 0.0033 20.7 3.5 39 321-371 5-43 (70)
188 2egq_A FHL1 protein; LIM domai 20.5 85 0.0029 21.5 3.3 42 321-372 15-59 (77)
189 2ehe_A Four and A half LIM dom 20.4 78 0.0027 22.0 3.2 41 321-371 15-55 (82)
190 1x62_A C-terminal LIM domain p 20.4 87 0.003 21.7 3.4 39 320-370 14-52 (79)
191 2cup_A Skeletal muscle LIM-pro 20.4 97 0.0033 22.5 3.8 46 321-371 33-78 (101)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.69 E-value=4.2e-17 Score=126.26 Aligned_cols=83 Identities=30% Similarity=0.660 Sum_probs=70.1
Q ss_pred CCCCCcccCCCChhhhhcCCceeeccCCCCCCCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccC
Q 043654 287 VAPQPTVIAGLDGPTIESYPKIVLGESRRLPKPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCR 366 (390)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR 366 (390)
.........+++++.++.+|.+.+..... ....+..|+||+++|..++.++.++ |+|.||..||+.|++.+.+||+||
T Consensus 7 ~~~~~~~~~~~s~~~i~~lp~~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr 84 (91)
T 2l0b_A 7 HHSHMVANPPASKESIDALPEILVTEDHG-AVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCR 84 (91)
T ss_dssp CSCCSSCCCCCCHHHHHTSCEEECCTTCS-SSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTC
T ss_pred cCCCCcCCCCCCHHHHHhCCCeeeccccc-ccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcC
Confidence 33444555689999999999988775432 2456788999999999999999999 999999999999999999999999
Q ss_pred CcCCC
Q 043654 367 NSPAR 371 (390)
Q Consensus 367 ~~~~~ 371 (390)
+++..
T Consensus 85 ~~~~~ 89 (91)
T 2l0b_A 85 CMFPP 89 (91)
T ss_dssp CBSSC
T ss_pred ccCCC
Confidence 98765
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.8e-16 Score=117.07 Aligned_cols=70 Identities=30% Similarity=0.857 Sum_probs=58.6
Q ss_pred hhhhcCCceeeccCCCCCCCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 300 PTIESYPKIVLGESRRLPKPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 300 ~~~~~~p~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
+.++.+|...+.... ...++.+|+||+++|..++.++.++ |+|+||..||.+|++.+.+||+||+++...
T Consensus 4 ~~i~~lp~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNN--HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCCSSCCCEEBCSSS--CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hhHhhCCcEEecCcc--ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 345667777765432 2456789999999999999999999 999999999999999999999999988654
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=4.3e-15 Score=110.22 Aligned_cols=59 Identities=32% Similarity=0.884 Sum_probs=52.4
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCCCCCcc
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARLPPLPA 377 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~~~~~ 377 (390)
...+..|+||+++|..++.+++++ |+|+||..||.+|++.+.+||+||+++........
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLSG 70 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSCCC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccccccCC
Confidence 445789999999999999999999 99999999999999999999999999977665543
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.55 E-value=2.5e-15 Score=104.69 Aligned_cols=52 Identities=44% Similarity=0.993 Sum_probs=47.5
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCC
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPA 370 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~ 370 (390)
+++.+|+||+++|..++.++.++.|+|+||..||.+|++.+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4568999999999998888888779999999999999999999999999764
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=9.4e-15 Score=106.83 Aligned_cols=56 Identities=38% Similarity=0.912 Sum_probs=50.0
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARLPP 374 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~~ 374 (390)
......|+||++.|..++.++.++ |+|+||..||.+|++.+.+||+||+++....+
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 455789999999999888899999 99999999999999999999999999876543
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.53 E-value=1.1e-14 Score=109.12 Aligned_cols=58 Identities=33% Similarity=0.852 Sum_probs=51.9
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCCCCCc
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARLPPLP 376 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~~~~ 376 (390)
.....+|+||++.|..++.+++++ |+|+||..||.+|++.+.+||+||+++......+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence 445789999999999999999999 9999999999999999999999999987766554
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.4e-14 Score=109.35 Aligned_cols=52 Identities=29% Similarity=0.760 Sum_probs=42.6
Q ss_pred CCCcccccccccCC-----------CCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCC
Q 043654 320 DDNTCPICLAEYKP-----------KETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPAR 371 (390)
Q Consensus 320 ~~~~C~ICl~~~~~-----------~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~ 371 (390)
++..|+||+++|.+ ++.+++++.|+|+||.+||++||+.+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45678888887754 45566776799999999999999999999999998753
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.43 E-value=9e-14 Score=96.71 Aligned_cols=51 Identities=29% Similarity=0.828 Sum_probs=44.1
Q ss_pred CCCCcccccccccCCCC-cEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCC
Q 043654 319 PDDNTCPICLAEYKPKE-TLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPA 370 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~-~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~ 370 (390)
..+.+|+||+++|..++ .++.++ |+|+||..||.+|++.+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 35689999999997654 567777 9999999999999999999999999764
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.39 E-value=1.3e-13 Score=101.12 Aligned_cols=56 Identities=27% Similarity=0.663 Sum_probs=47.3
Q ss_pred CCCCCcccccccccCCC----CcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCCCC
Q 043654 318 KPDDNTCPICLAEYKPK----ETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARLPP 374 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~----~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~~ 374 (390)
..++..|+||++.|.+. +.+..++ |||+||..||.+|++.+.+||+||+++.....
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 45578999999999763 4556777 99999999999999999999999999876543
No 10
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.38 E-value=2.9e-13 Score=107.06 Aligned_cols=50 Identities=26% Similarity=0.578 Sum_probs=42.9
Q ss_pred CCCcccccccccCCCC---------------cEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCC
Q 043654 320 DDNTCPICLAEYKPKE---------------TLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPA 370 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~---------------~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~ 370 (390)
++..|+||+++|...- .++.++ |+|.||..||++||+.+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4688999999998541 356677 9999999999999999999999999853
No 11
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.38 E-value=4e-13 Score=108.22 Aligned_cols=53 Identities=21% Similarity=0.517 Sum_probs=43.3
Q ss_pred CCCcccccccccCCCC---------------cEEEcCCCCCcccHhhHHHHH-----hCCCCCcccCCcCCCCC
Q 043654 320 DDNTCPICLAEYKPKE---------------TLKTIPECTHCFHADCVDEWL-----RLNATCPVCRNSPARLP 373 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~---------------~~~~l~~C~H~FH~~Ci~~wl-----~~~~~CP~CR~~~~~~~ 373 (390)
.+..|+||+++|..+. .++.++ |+|+||..||++|+ +.+.+||+||+.+....
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 3569999999997653 344677 99999999999999 45778999999886553
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=3.4e-13 Score=98.27 Aligned_cols=53 Identities=28% Similarity=0.738 Sum_probs=45.2
Q ss_pred CCCCCcccccccccCCC----CcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCC
Q 043654 318 KPDDNTCPICLAEYKPK----ETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPAR 371 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~----~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~ 371 (390)
..+...|+||++.|... +.+..++ |+|+||..||.+|++.+.+||+||+++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34578999999999864 3456777 99999999999999999999999998764
No 13
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=7.1e-13 Score=99.29 Aligned_cols=56 Identities=25% Similarity=0.681 Sum_probs=46.0
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCC-----CcccHhhHHHHHhCC--CCCcccCCcCCCCCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECT-----HCFHADCVDEWLRLN--ATCPVCRNSPARLPPL 375 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~-----H~FH~~Ci~~wl~~~--~~CP~CR~~~~~~~~~ 375 (390)
..++..|+||+++|.+++.+ ++| |+ |.||.+||++||+.+ .+||+||+++......
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~ 74 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKL 74 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCS
T ss_pred CCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCccc
Confidence 44567999999999877776 588 96 999999999999765 5899999998655433
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.35 E-value=2.2e-13 Score=97.72 Aligned_cols=53 Identities=28% Similarity=0.699 Sum_probs=45.3
Q ss_pred CCCcccccccccCCC----CcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCCC
Q 043654 320 DDNTCPICLAEYKPK----ETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARLP 373 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~----~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~ 373 (390)
++.+|+||++.+.++ +.+..++ |||+||..||.+|++.+.+||+||+++....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 467899999999753 4556777 9999999999999999999999999887653
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.35 E-value=6e-13 Score=96.76 Aligned_cols=51 Identities=33% Similarity=0.867 Sum_probs=43.8
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
..+..|+||++.+.. .++.++ |||.||..||.+|++.+.+||+||+++...
T Consensus 3 ~~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 3 TVAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 346789999999864 356788 999999999999999999999999988644
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.8e-12 Score=94.39 Aligned_cols=56 Identities=21% Similarity=0.451 Sum_probs=46.1
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCCCCCc
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARLPPLP 376 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~~~~ 376 (390)
..+...|+||++.|.+. +..++ |+|.||..||.+|++.+..||+||+++.......
T Consensus 12 ~~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 12 LTPYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp CCGGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCC
T ss_pred cCCCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcccccc
Confidence 34578999999998864 33346 9999999999999999999999999987665544
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=8.5e-13 Score=96.57 Aligned_cols=53 Identities=28% Similarity=0.755 Sum_probs=45.6
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCCCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARLPPL 375 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~~~ 375 (390)
..+...|+||++.+.. ..++ |+|.||..||.+|++.+.+||+||+++......
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 64 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANES 64 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCC
T ss_pred CCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCcc
Confidence 3456899999999876 6678 999999999999999999999999998765543
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2e-12 Score=94.83 Aligned_cols=51 Identities=27% Similarity=0.551 Sum_probs=43.5
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
..+...|+||++.+.+. ..++ |+|+||..||..|++.+..||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 44568999999998654 5667 999999999999999999999999987543
No 19
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.26 E-value=4.6e-13 Score=107.38 Aligned_cols=50 Identities=26% Similarity=0.604 Sum_probs=1.1
Q ss_pred CCCcccccccccCCC-------------Cc--EEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCC
Q 043654 320 DDNTCPICLAEYKPK-------------ET--LKTIPECTHCFHADCVDEWLRLNATCPVCRNSPA 370 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~-------------~~--~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~ 370 (390)
.++.|+||+++|... +. +..++ |+|.||..||++||+.+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 468999999999752 22 22345 9999999999999999999999999853
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.2e-11 Score=94.46 Aligned_cols=54 Identities=22% Similarity=0.610 Sum_probs=45.7
Q ss_pred CCCCCcccccccccCCCCc-EEEcCCCCCcccHhhHHHHHhCC---CCCcccCCcCCCC
Q 043654 318 KPDDNTCPICLAEYKPKET-LKTIPECTHCFHADCVDEWLRLN---ATCPVCRNSPARL 372 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~-~~~l~~C~H~FH~~Ci~~wl~~~---~~CP~CR~~~~~~ 372 (390)
..+..+|+||++.|...+. .+.++ |||.||..||..|++.+ ..||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 4457899999999998664 67777 99999999999999875 7899999987554
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.21 E-value=1.4e-11 Score=91.09 Aligned_cols=53 Identities=26% Similarity=0.585 Sum_probs=43.0
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCC--CCCcccCCcCCCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLN--ATCPVCRNSPARLP 373 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~--~~CP~CR~~~~~~~ 373 (390)
..+...|+||++.|.++ .+++.|||.||..||..|++.+ ..||+||+++....
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp SCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 34578999999999865 3465599999999999999765 68999999865443
No 22
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=1.2e-11 Score=90.55 Aligned_cols=51 Identities=22% Similarity=0.521 Sum_probs=42.9
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCC--CCCcccCCcCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLN--ATCPVCRNSPAR 371 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~--~~CP~CR~~~~~ 371 (390)
.+...+|+||.+.+..++... .|+|.||..||.+||+.+ .+||+||+++..
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred cCCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 455689999999999775443 499999999999999887 889999988643
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.7e-11 Score=88.54 Aligned_cols=51 Identities=22% Similarity=0.483 Sum_probs=42.4
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHH-hCCCCCcccCCcCCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWL-RLNATCPVCRNSPARL 372 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl-~~~~~CP~CR~~~~~~ 372 (390)
..+...|+||++.+.++. .++ |||+||..||.+|+ +.+..||+||+++...
T Consensus 12 ~~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPK---QTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCCEECTTTCCEESSCC---CCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCcCCCCCCCChHhcCee---ECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 345689999999998663 366 99999999999999 4567899999988654
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.6e-11 Score=92.47 Aligned_cols=49 Identities=22% Similarity=0.543 Sum_probs=42.5
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPA 370 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~ 370 (390)
......|+||++.|..+ .+++ |+|+||..||.+|++....||+||+++.
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34567999999998754 4577 9999999999999999999999999986
No 25
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=2.6e-11 Score=89.28 Aligned_cols=51 Identities=29% Similarity=0.626 Sum_probs=42.2
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHh---CCCCCcccCCcCCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLR---LNATCPVCRNSPARL 372 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~---~~~~CP~CR~~~~~~ 372 (390)
..+...|+||++.|.+. ..++ |||.||..||..|++ .+..||+||+++...
T Consensus 17 ~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CccCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 34578999999998853 4567 999999999999996 456899999988654
No 26
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=1.9e-11 Score=87.93 Aligned_cols=56 Identities=25% Similarity=0.513 Sum_probs=44.1
Q ss_pred CCCccccccc-ccCCCCcE-EEcCCCCCcccHhhHHHHHhC-CCCCcccCCcCCCCCCCc
Q 043654 320 DDNTCPICLA-EYKPKETL-KTIPECTHCFHADCVDEWLRL-NATCPVCRNSPARLPPLP 376 (390)
Q Consensus 320 ~~~~C~ICl~-~~~~~~~~-~~l~~C~H~FH~~Ci~~wl~~-~~~CP~CR~~~~~~~~~~ 376 (390)
++..|+||++ .|..+... ..++ |||+||..||++|+.+ +..||+||+++......+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV 60 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEE
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccccccee
Confidence 3578999999 77766543 3466 9999999999999754 467999999987665444
No 27
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.15 E-value=1.4e-11 Score=101.61 Aligned_cols=56 Identities=27% Similarity=0.655 Sum_probs=47.5
Q ss_pred CCCCcccccccccCCC----CcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCCCCC
Q 043654 319 PDDNTCPICLAEYKPK----ETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARLPPL 375 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~----~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~~~ 375 (390)
.+...|+||++.|.++ +.++.++ |||+||..||.+|++.+.+||+||+.+......
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~ 64 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 64 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEE
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcccccc
Confidence 4568999999999764 4557777 999999999999999999999999998766543
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.13 E-value=3.9e-11 Score=89.59 Aligned_cols=53 Identities=21% Similarity=0.450 Sum_probs=44.4
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC-CCCCcccCCcCCCCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL-NATCPVCRNSPARLPP 374 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~-~~~CP~CR~~~~~~~~ 374 (390)
..+...|+||++.|.++ .+++ |||.||+.||.+|++. +.+||+||+++.....
T Consensus 5 ~~~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l 58 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAGL 58 (78)
T ss_dssp CSSSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCC
T ss_pred CcccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChhhC
Confidence 34578999999998765 4467 9999999999999987 7889999999876543
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.11 E-value=1e-10 Score=88.57 Aligned_cols=53 Identities=30% Similarity=0.590 Sum_probs=44.2
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC------CCCCcccCCcCCCCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL------NATCPVCRNSPARLPP 374 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~------~~~CP~CR~~~~~~~~ 374 (390)
..+...|+||++.|..+ .+++ |+|.||..||..|++. ...||+||+.+.....
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCC
T ss_pred CccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhC
Confidence 34568999999998865 3677 9999999999999977 6789999999876543
No 30
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.11 E-value=2.1e-11 Score=101.55 Aligned_cols=48 Identities=29% Similarity=0.823 Sum_probs=42.1
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
+..|+||++.|..+ ..++ |||.||..||..|+..+.+||+||+++...
T Consensus 53 ~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 46899999998754 5677 999999999999999999999999988544
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.2e-10 Score=88.24 Aligned_cols=54 Identities=30% Similarity=0.612 Sum_probs=44.4
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC------CCCCcccCCcCCCCCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL------NATCPVCRNSPARLPPL 375 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~------~~~CP~CR~~~~~~~~~ 375 (390)
..+...|+||++.+.+. ..++ |+|.||..||..|++. ...||+||+.+......
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 75 (85)
T ss_dssp CCCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCC
T ss_pred ccCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcC
Confidence 34568999999999765 3467 9999999999999977 78899999998765433
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=1.3e-10 Score=82.85 Aligned_cols=44 Identities=32% Similarity=0.705 Sum_probs=37.2
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHh---CCCCCccc
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLR---LNATCPVC 365 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~---~~~~CP~C 365 (390)
..++..|+||++.|.++ .+++ |||+||..||.+|++ .+..||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34578999999999865 4567 999999999999997 45689998
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.07 E-value=3.2e-11 Score=90.23 Aligned_cols=51 Identities=27% Similarity=0.592 Sum_probs=43.0
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC-------CCCCcccCCcCCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL-------NATCPVCRNSPARL 372 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~-------~~~CP~CR~~~~~~ 372 (390)
..+...|+||++.|.++ ..++ |||.||..||..|++. ...||+||+++...
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 34578999999999865 3467 9999999999999976 66899999998754
No 34
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.07 E-value=5.9e-11 Score=93.11 Aligned_cols=51 Identities=24% Similarity=0.550 Sum_probs=42.1
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCC-CCCcccCCcCCCCC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLN-ATCPVCRNSPARLP 373 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~-~~CP~CR~~~~~~~ 373 (390)
+...|+||++.|..+ +..++ |||.||..||.+|++.+ ..||+||+++....
T Consensus 21 ~~~~C~IC~~~~~~p--~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA--RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCccCCccccCc--cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 367899999999753 33366 99999999999999887 69999999985543
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.03 E-value=1.3e-10 Score=90.84 Aligned_cols=49 Identities=20% Similarity=0.577 Sum_probs=41.6
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
...|+||++.|.++ +..++ |||.||..||..|++.+..||+||+.+...
T Consensus 22 ~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 22 LLRCGICFEYFNIA--MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCcccCChhhCCc--CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 57899999998853 33336 999999999999999999999999988653
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.7e-10 Score=80.78 Aligned_cols=44 Identities=32% Similarity=0.834 Sum_probs=36.6
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHH---hCCCCCccc
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWL---RLNATCPVC 365 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl---~~~~~CP~C 365 (390)
..+...|+||++.+.++ .+++ |+|+||..||.+|+ +.+..||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34568999999999876 3467 99999999999995 456789998
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.02 E-value=6.7e-11 Score=97.43 Aligned_cols=54 Identities=28% Similarity=0.710 Sum_probs=45.2
Q ss_pred CCCCcccccccccCCC----CcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCCC
Q 043654 319 PDDNTCPICLAEYKPK----ETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARLP 373 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~----~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~ 373 (390)
.+...|+||++.|.+. .....++ |||+||..||++|++.+++||+||+++....
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 3467899999999753 3445666 9999999999999999999999999886543
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.01 E-value=2.1e-10 Score=91.19 Aligned_cols=50 Identities=22% Similarity=0.586 Sum_probs=42.9
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
+...|+||++.|.+ .+..++ |||.||..||..|++.+..||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 46799999999875 344447 999999999999999999999999998764
No 39
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.00 E-value=3.7e-10 Score=87.00 Aligned_cols=50 Identities=28% Similarity=0.642 Sum_probs=41.4
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCC--CCCcccCCcCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLN--ATCPVCRNSPA 370 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~--~~CP~CR~~~~ 370 (390)
..+...|+||++.|.++ ..++.|||.||..||..|+..+ ..||+||.++.
T Consensus 10 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 45678999999999865 3555599999999999999643 58999999874
No 40
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.99 E-value=4.8e-10 Score=83.45 Aligned_cols=59 Identities=22% Similarity=0.462 Sum_probs=45.1
Q ss_pred CCCCCcccccccccCCCCc-EEEcCCCCCcccHhhHHHHHh-CCCCCcccCCcCCCCCCCcc
Q 043654 318 KPDDNTCPICLAEYKPKET-LKTIPECTHCFHADCVDEWLR-LNATCPVCRNSPARLPPLPA 377 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~-~~~l~~C~H~FH~~Ci~~wl~-~~~~CP~CR~~~~~~~~~~~ 377 (390)
..++.+|+||++.+...+. +..++ |||.||..|+..|++ .+..||+||+++........
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~ 68 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYK 68 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCC
T ss_pred cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhc
Confidence 3457899999999865432 23345 999999999999984 46789999999987665443
No 41
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.97 E-value=3.8e-10 Score=92.08 Aligned_cols=48 Identities=29% Similarity=0.596 Sum_probs=41.0
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCC-CCcccCCcCCC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNA-TCPVCRNSPAR 371 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~-~CP~CR~~~~~ 371 (390)
+...|+||++.|..+ ..++ |||.||..||..|+..+. .||+||+++..
T Consensus 51 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 357899999999854 4567 999999999999998554 89999999876
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.94 E-value=4.3e-10 Score=96.43 Aligned_cols=49 Identities=43% Similarity=0.823 Sum_probs=41.4
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC-CCCCcccCCcCCC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL-NATCPVCRNSPAR 371 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~-~~~CP~CR~~~~~ 371 (390)
....|+||++.|.+ .+..++ |||.||..||..|++. +..||+||.++..
T Consensus 53 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 45799999999885 344457 9999999999999987 7889999998854
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=5.4e-10 Score=89.32 Aligned_cols=50 Identities=30% Similarity=0.632 Sum_probs=41.6
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCC---CCcccCCcCCCCCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNA---TCPVCRNSPARLPP 374 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~---~CP~CR~~~~~~~~ 374 (390)
...|+||++.|..+ ..++ |||.||..||..|+..+. .||+||.++.....
T Consensus 21 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 56899999998765 3467 999999999999998654 89999998876543
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.88 E-value=6.4e-10 Score=89.89 Aligned_cols=52 Identities=27% Similarity=0.552 Sum_probs=43.4
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCC-CCcccCCcCCCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNA-TCPVCRNSPARLP 373 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~-~CP~CR~~~~~~~ 373 (390)
..+...|+||++.+..+ ..++ |||.||..||.+|++.+. +||+||.++....
T Consensus 15 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 15 LESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 44578999999998865 4567 999999999999997765 9999999986643
No 45
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.87 E-value=1e-09 Score=78.45 Aligned_cols=51 Identities=24% Similarity=0.356 Sum_probs=41.1
Q ss_pred CCCCCcccccccccCCCCcEE-EcCCCCCc-ccHhhHHHHHhCCCCCcccCCcCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLK-TIPECTHC-FHADCVDEWLRLNATCPVCRNSPAR 371 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~-~l~~C~H~-FH~~Ci~~wl~~~~~CP~CR~~~~~ 371 (390)
..++..|+||++.+.+. +. .+| |||. |+.+|+..|++.+..||+||+++..
T Consensus 5 ~~~~~~C~IC~~~~~~~--~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNG--CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp CGGGSCCTTTSSSCSCE--EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCCcCCCCcCCCCCCCE--EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 34567999999986543 22 238 9999 8999999999999999999998753
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.86 E-value=1.6e-09 Score=91.25 Aligned_cols=49 Identities=22% Similarity=0.522 Sum_probs=41.8
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCC-CCcccCCcCCCC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNA-TCPVCRNSPARL 372 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~-~CP~CR~~~~~~ 372 (390)
+...|+||++.|.++ .+++ |||.||..||..|++... .||+||.++...
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 357899999998764 4477 999999999999998754 899999998766
No 47
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.85 E-value=1.7e-09 Score=84.53 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=46.2
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCCCCCc
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARLPPLP 376 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~~~~ 376 (390)
.....|+||++.|.++ .+++ |||.|++.||.+|+..+.+||+||.++......+
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~p 80 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEP 80 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEE
T ss_pred cHhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhhceE
Confidence 4578999999999877 4567 9999999999999998999999999987654443
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.84 E-value=1.1e-09 Score=88.07 Aligned_cols=49 Identities=24% Similarity=0.521 Sum_probs=41.6
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC-CCCCcccCCcCCCCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL-NATCPVCRNSPARLP 373 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~-~~~CP~CR~~~~~~~ 373 (390)
...|+||++.+.++ ..++ |||.||..||.+|++. +.+||+||.++....
T Consensus 23 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 23 SISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 57899999998754 3467 9999999999999987 778999999986543
No 49
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.84 E-value=1.9e-09 Score=81.73 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=44.9
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCCCC
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARLPP 374 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~~ 374 (390)
.....|+||++.|.++ .+++ |||.|++.||.+|+..+.+||+||.++.....
T Consensus 12 p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l 63 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTESML 63 (85)
T ss_dssp CTTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred chheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChHhc
Confidence 4578999999999876 4567 99999999999999989999999998865443
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.83 E-value=1.2e-09 Score=75.88 Aligned_cols=48 Identities=27% Similarity=0.546 Sum_probs=40.5
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCCC
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARLP 373 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~ 373 (390)
.+...|+||++.|..+ ++++ |+|.||..||..| ...||+||+++....
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 4568899999999875 5677 9999999999884 678999999887654
No 51
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.82 E-value=6.9e-10 Score=89.22 Aligned_cols=48 Identities=25% Similarity=0.649 Sum_probs=40.9
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC-CCCCcccCCcCC
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL-NATCPVCRNSPA 370 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~-~~~CP~CR~~~~ 370 (390)
.++..|+||++.|..+ ..++ |||.||..||..|+.. +..||+||+.+.
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 3467899999998865 4567 9999999999999976 678999999875
No 52
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.81 E-value=3.9e-09 Score=82.16 Aligned_cols=54 Identities=17% Similarity=0.107 Sum_probs=45.8
Q ss_pred CCCCcccccccccCCCCcEEEcCCCC-CcccHhhHHHHHhCCCCCcccCCcCCCCCCCc
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECT-HCFHADCVDEWLRLNATCPVCRNSPARLPPLP 376 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~-H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~~~~ 376 (390)
.++..|+||++.|.++ .+++ || |.|++.||.+||..+.+||+||.++......+
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~p 74 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRP 74 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEE
T ss_pred cHhcCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceE
Confidence 3478999999999876 4566 99 99999999999998999999999987654443
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.74 E-value=3.5e-09 Score=75.43 Aligned_cols=51 Identities=16% Similarity=0.350 Sum_probs=40.4
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCc-ccHhhHHHHHhCCCCCcccCCcCCC
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHC-FHADCVDEWLRLNATCPVCRNSPAR 371 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~wl~~~~~CP~CR~~~~~ 371 (390)
.....|+||++...+. .+..+| |||. |+..|+..|.+.+..||+||+++..
T Consensus 5 ~~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 3467899999985532 122238 9998 9999999999888999999998753
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.71 E-value=3.6e-09 Score=85.31 Aligned_cols=47 Identities=23% Similarity=0.569 Sum_probs=40.0
Q ss_pred CCCcccccccccCCCCcEEEc-CCCCCcccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 320 DDNTCPICLAEYKPKETLKTI-PECTHCFHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l-~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
+...|+||++.|..+ ..+ + |||.||..||..|+. ..||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred hCCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 367999999999865 345 6 999999999999997 8899999998544
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.71 E-value=7e-09 Score=99.47 Aligned_cols=48 Identities=29% Similarity=0.678 Sum_probs=41.4
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHh-CCCCCcccCCcCCCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLR-LNATCPVCRNSPARL 372 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~-~~~~CP~CR~~~~~~ 372 (390)
...|+||++.+.. ...+| |||.||..|+..|+. .+.+||+||+++...
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 4799999999754 46678 999999999999998 788999999987654
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.70 E-value=2.8e-09 Score=88.78 Aligned_cols=50 Identities=16% Similarity=0.385 Sum_probs=41.7
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCC-CCcccCCcCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNA-TCPVCRNSPAR 371 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~-~CP~CR~~~~~ 371 (390)
..+...|+||++.|.++ ..++ |||.||..||..|++... .||+||.++..
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CCcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 34578999999999876 4466 999999999999998664 89999998643
No 57
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.64 E-value=6.5e-09 Score=96.75 Aligned_cols=53 Identities=25% Similarity=0.636 Sum_probs=40.8
Q ss_pred CCCCCcccccccccCCCCcEE----EcCCCCCcccHhhHHHHHhCC-----------CCCcccCCcCC
Q 043654 318 KPDDNTCPICLAEYKPKETLK----TIPECTHCFHADCVDEWLRLN-----------ATCPVCRNSPA 370 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~----~l~~C~H~FH~~Ci~~wl~~~-----------~~CP~CR~~~~ 370 (390)
.....+|+||++.+.++..+. ..++|+|.||..||.+|+++. .+||+||+++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 346789999999998733221 223599999999999999652 36999999875
No 58
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.62 E-value=2.4e-08 Score=70.16 Aligned_cols=48 Identities=27% Similarity=0.606 Sum_probs=37.5
Q ss_pred CCCCcccccccccCCCCcEEEcCCCC--C---cccHhhHHHHHhC--CCCCcccCCcCC
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECT--H---CFHADCVDEWLRL--NATCPVCRNSPA 370 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~--H---~FH~~Ci~~wl~~--~~~CP~CR~~~~ 370 (390)
.+...|.||+++. ++.+ ++| |. | .||..||++|+.. +.+||+||+++.
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4567899999983 3333 577 65 4 9999999999954 678999999764
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.62 E-value=6.8e-09 Score=76.47 Aligned_cols=43 Identities=23% Similarity=0.667 Sum_probs=36.9
Q ss_pred CCcccccccccCCCCcEEEcCCCCCc-ccHhhHHHHHhCCCCCcccCCcCCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHC-FHADCVDEWLRLNATCPVCRNSPAR 371 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~wl~~~~~CP~CR~~~~~ 371 (390)
+..|+||++.+.+ ...+| |||. ||..|+..| ..||+||+++..
T Consensus 24 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 5689999998664 35678 9999 999999999 889999998754
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=1.6e-08 Score=78.19 Aligned_cols=51 Identities=25% Similarity=0.501 Sum_probs=40.1
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCC------CCCcc--cCCc-CCCC
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLN------ATCPV--CRNS-PARL 372 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~------~~CP~--CR~~-~~~~ 372 (390)
.....|+||++.|.++ .+++.|||+|++.||.+||..+ .+||+ |+.. +...
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~ 64 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh
Confidence 4568999999999865 3343499999999999999754 48999 9866 5433
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.52 E-value=2.9e-08 Score=85.39 Aligned_cols=52 Identities=27% Similarity=0.544 Sum_probs=43.2
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCC-CCCcccCCcCCCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLN-ATCPVCRNSPARLP 373 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~-~~CP~CR~~~~~~~ 373 (390)
..+...|+||++.|.++ ..++ |||+|+..||.+|++.. ..||+||.++....
T Consensus 15 ~~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 15 LESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 45578999999999865 4467 99999999999999764 48999999886643
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.48 E-value=6.3e-08 Score=74.70 Aligned_cols=49 Identities=24% Similarity=0.710 Sum_probs=40.7
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC--------CCCCcc--cCCc
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL--------NATCPV--CRNS 368 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~--------~~~CP~--CR~~ 368 (390)
.+..+|+||++++..++.++..+ |+|.|+.+|+..+++. ...||. ||..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 34678999999998776666667 9999999999999853 236999 9987
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=1.4e-07 Score=68.10 Aligned_cols=50 Identities=24% Similarity=0.585 Sum_probs=39.9
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCc-ccHhhHHHHHhCCCCCcccCCcCCCCCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHC-FHADCVDEWLRLNATCPVCRNSPARLPPL 375 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~wl~~~~~CP~CR~~~~~~~~~ 375 (390)
..+...|+||++... .+..+| |+|. |+..|+.. ...||+||+++.....+
T Consensus 12 ~~~~~~C~IC~~~~~---~~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~~~i 62 (68)
T 2ea5_A 12 EENSKDCVVCQNGTV---NWVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQESFAL 62 (68)
T ss_dssp CCCSSCCSSSSSSCC---CCEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCEECC
T ss_pred CCCCCCCCCcCcCCC---CEEEEC-CCChhhhHHHHhc----CCCCCCCCcchhceEEe
Confidence 345689999999854 457788 9999 99999984 57899999998765433
No 64
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.44 E-value=1e-07 Score=88.41 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=44.3
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC-CCCCcccCCcCCCCCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL-NATCPVCRNSPARLPPL 375 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~-~~~CP~CR~~~~~~~~~ 375 (390)
......|+||++.|.++ .+++ |||+|++.||..|+.. +.+||+||.++......
T Consensus 205 ~~~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~ 259 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLI 259 (281)
T ss_dssp CCSTTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCE
T ss_pred CCcccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCc
Confidence 45678999999999876 4577 9999999999999976 44599999998655443
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=1.1e-07 Score=70.14 Aligned_cols=44 Identities=23% Similarity=0.602 Sum_probs=36.2
Q ss_pred CCcccccccccCCCCcEEEcCCCCCc-ccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHC-FHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
...|+||++.+.+. ..+| |||. ||..|+.. ...||+||+++...
T Consensus 25 ~~~C~IC~~~~~~~---~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCCB---CCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCCE---EEec-CCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 56899999997653 4577 9999 99999964 47899999988664
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.33 E-value=1.7e-07 Score=80.62 Aligned_cols=55 Identities=18% Similarity=0.195 Sum_probs=44.6
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCC-CCCcccCCcCCCCCCCc
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLN-ATCPVCRNSPARLPPLP 376 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~-~~CP~CR~~~~~~~~~~ 376 (390)
......||||++.|.++ .+++ |||.|.+.||..|+..+ .+||+||.++......|
T Consensus 103 ip~~f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~p 158 (179)
T 2f42_A 103 IPDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIP 158 (179)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEE
T ss_pred CcHhhcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcc
Confidence 45679999999999875 4556 99999999999999764 57999999886554433
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.24 E-value=2.9e-07 Score=64.81 Aligned_cols=53 Identities=9% Similarity=0.162 Sum_probs=43.1
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCCCCCc
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARLPPLP 376 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~~~~ 376 (390)
...|+|+++.+.++ .+++.+||+|.+.||.+|++++.+||+.+.++......+
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE 55 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEE
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEE
Confidence 36799999999865 344239999999999999998889999999987665444
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.22 E-value=4.2e-07 Score=67.64 Aligned_cols=44 Identities=27% Similarity=0.656 Sum_probs=36.5
Q ss_pred CCcccccccccCCCCcEEEcCCCCCc-ccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHC-FHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
...|+||++.+.. ...+| |||. |+..|+..| ..||+||+++...
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 4689999998553 56778 9999 999999987 4999999987554
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.10 E-value=7.7e-07 Score=80.34 Aligned_cols=52 Identities=27% Similarity=0.552 Sum_probs=41.8
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCC--CCCcc--cCCcCCCCC
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLN--ATCPV--CRNSPARLP 373 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~--~~CP~--CR~~~~~~~ 373 (390)
.....||||++.|.++ |+.+. |||+|++.||.+|++.+ ..||+ ||+.+....
T Consensus 179 ~~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 179 KIELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp BCCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred ceeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence 4568999999999755 44445 99999999999999764 46999 999875543
No 70
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.04 E-value=3.3e-06 Score=64.15 Aligned_cols=49 Identities=29% Similarity=0.552 Sum_probs=40.0
Q ss_pred cccccccccCCCCcEEEcCCCCCcccHhhHHHHHh-CCCCCcccCCcCCCCCC
Q 043654 323 TCPICLAEYKPKETLKTIPECTHCFHADCVDEWLR-LNATCPVCRNSPARLPP 374 (390)
Q Consensus 323 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~-~~~~CP~CR~~~~~~~~ 374 (390)
-|++|--.+. ...|++| |+|+|+.+|+..|.+ +.++||+||.++...+.
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 4777766655 5678999 999999999999984 57899999999866544
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.98 E-value=1.5e-06 Score=82.78 Aligned_cols=44 Identities=27% Similarity=0.773 Sum_probs=37.4
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCc-ccHhhHHHHHhCCCCCcccCCcCCC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHC-FHADCVDEWLRLNATCPVCRNSPAR 371 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-FH~~Ci~~wl~~~~~CP~CR~~~~~ 371 (390)
++..|+||++.+.. ...+| |||. ||..|+..| ..||+||+++..
T Consensus 294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 35799999999764 35678 9999 999999998 789999998754
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.63 E-value=5.4e-05 Score=68.24 Aligned_cols=50 Identities=24% Similarity=0.527 Sum_probs=40.3
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCC--CCcccCCcCCCC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNA--TCPVCRNSPARL 372 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~--~CP~CR~~~~~~ 372 (390)
....|.||.+....+.. -+.|+|.||..|+..|++.+. .||.|+.+....
T Consensus 179 ~i~~C~iC~~iv~~g~~---C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCEE---CSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCcc---cCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 46899999999887633 334999999999999997654 899999975433
No 73
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=95.07 E-value=0.098 Score=38.51 Aligned_cols=57 Identities=23% Similarity=0.403 Sum_probs=40.2
Q ss_pred CCCcccccccccCC---CCcEEEcCCCCCcccHhhHHHHH-hCCCCCcccCCcCCCCCCCc
Q 043654 320 DDNTCPICLAEYKP---KETLKTIPECTHCFHADCVDEWL-RLNATCPVCRNSPARLPPLP 376 (390)
Q Consensus 320 ~~~~C~ICl~~~~~---~~~~~~l~~C~H~FH~~Ci~~wl-~~~~~CP~CR~~~~~~~~~~ 376 (390)
....|.||-++.-. ++...--..|+--.++.|.+-=. ..++.||.|++++......|
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp 75 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSP 75 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCCC
Confidence 45799999998643 33222233477778999997655 45789999999997655544
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.53 E-value=0.029 Score=41.80 Aligned_cols=50 Identities=22% Similarity=0.537 Sum_probs=39.9
Q ss_pred CCCCcccccccccCCCCcEEEcCCCC-CcccHhhHHHHHhCCCCCcccCCcCCCCCC
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECT-HCFHADCVDEWLRLNATCPVCRNSPARLPP 374 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~-H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~~ 374 (390)
-+-..|-.|+-+.+. .+. |+ |.++..|+...|+....||+|+.++.....
T Consensus 26 ~G~~nCKsCWf~~k~-----LV~-C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG-----LVE-CNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLR 76 (99)
T ss_dssp SCCCCCCSSCSCCSS-----EEE-CSSCEEEHHHHHHTCSSSSEETTTTEECCCCSC
T ss_pred cCcccChhhccccCC-----eee-ecchhhHHHHHHHHHhhccCCcccCCcCCccee
Confidence 346789999988552 334 64 999999999999999999999998855543
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.26 E-value=0.042 Score=38.69 Aligned_cols=50 Identities=16% Similarity=0.345 Sum_probs=35.6
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCC----CCCcccCCcCCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLN----ATCPVCRNSPAR 371 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~----~~CP~CR~~~~~ 371 (390)
......|.||.+. ++ +..--.|...||..|+++.|... -.||.|+....+
T Consensus 9 ~~~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p 62 (66)
T 2lri_C 9 LAPGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 62 (66)
T ss_dssp CCTTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred CCCCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence 3446789999753 44 44444599999999999988553 359999875433
No 76
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.59 E-value=0.086 Score=40.24 Aligned_cols=35 Identities=11% Similarity=0.434 Sum_probs=26.9
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHH
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEW 355 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~w 355 (390)
++..|.||++++.......-+. |+|.|+..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 3578999998754444444477 9999999999984
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.47 E-value=0.12 Score=36.00 Aligned_cols=50 Identities=26% Similarity=0.515 Sum_probs=35.8
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHh-----CCCCCcccCCc
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLR-----LNATCPVCRNS 368 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~-----~~~~CP~CR~~ 368 (390)
.+...|+||...+.++...+.--.|..-||..|+.--.. ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 456789999998865544444445999999999865421 35679999764
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=86.53 E-value=0.47 Score=32.60 Aligned_cols=47 Identities=19% Similarity=0.586 Sum_probs=33.5
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC----CCCCcccCCc
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL----NATCPVCRNS 368 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~----~~~CP~CR~~ 368 (390)
...+..|.||... + .+..--.|...||..|+..-+.. .-.||.|+..
T Consensus 8 ~~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 4557889999873 3 44444458999999999986533 3359999753
No 79
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=85.24 E-value=1.1 Score=28.55 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=9.6
Q ss_pred hhhhhHH-HHHHHHHHHHHHhhhh
Q 043654 242 IMVGAGV-PTMLCLLGLACIICAK 264 (390)
Q Consensus 242 i~i~~~i-~~~l~~~~i~~~i~~~ 264 (390)
|+.++.. +++++++++..+++.|
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~R 35 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVR 35 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHHHHHHHHHHHhh
Confidence 4444433 3333344444444444
No 80
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=83.79 E-value=1.3 Score=30.61 Aligned_cols=20 Identities=25% Similarity=0.541 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhhhhcc
Q 043654 247 GVPTMLCLLGLACIICAKLN 266 (390)
Q Consensus 247 ~i~~~l~~~~i~~~i~~~~r 266 (390)
+++.++++.++.++.+.+.+
T Consensus 16 g~~~lll~~glcI~ccvkcr 35 (70)
T 2klu_A 16 GVAGLLLFIGLGIFFSVRSR 35 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhhHHH
Confidence 33444555555555555433
No 81
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=83.65 E-value=0.47 Score=40.49 Aligned_cols=49 Identities=24% Similarity=0.589 Sum_probs=35.8
Q ss_pred CCcccccccccCCCCc---EEEcCCCCCcccHhhHHH------HHh-----CCCCCcccCCcC
Q 043654 321 DNTCPICLAEYKPKET---LKTIPECTHCFHADCVDE------WLR-----LNATCPVCRNSP 369 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~---~~~l~~C~H~FH~~Ci~~------wl~-----~~~~CP~CR~~~ 369 (390)
+..|+||...|.+++. .+.--.|..-||..|+.- -+. ....||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 3469999999988763 455556999999999842 121 167899998753
No 82
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=83.47 E-value=1.1 Score=28.44 Aligned_cols=14 Identities=29% Similarity=0.441 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhhhh
Q 043654 251 MLCLLGLACIICAK 264 (390)
Q Consensus 251 ~l~~~~i~~~i~~~ 264 (390)
+++++++..++|.|
T Consensus 23 l~vi~~l~~~~~~R 36 (44)
T 2jwa_A 23 LVVVLGVVFGILIK 36 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhee
Confidence 44444455555554
No 83
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=82.52 E-value=2.2 Score=27.10 Aligned_cols=12 Identities=8% Similarity=0.155 Sum_probs=5.1
Q ss_pred HHHHHHHHhhhh
Q 043654 253 CLLGLACIICAK 264 (390)
Q Consensus 253 ~~~~i~~~i~~~ 264 (390)
++++++.+++.|
T Consensus 25 ~ii~~~~~~~~R 36 (44)
T 2ks1_B 25 LVVALGIGLFMR 36 (44)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 333444444444
No 84
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=80.99 E-value=1.7 Score=31.59 Aligned_cols=36 Identities=22% Similarity=0.620 Sum_probs=23.8
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHH
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEW 355 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~w 355 (390)
...+..|.||- .|..++...- ..|+-+||..|+.+-
T Consensus 12 ~~~D~~C~VC~-~~t~~~l~pC-RvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCE-VWTAESLFPC-RVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTC-CCCSSCCSSC-SSSSSCCCHHHHHHH
T ss_pred CCCCcccCccc-cccccceecc-ccccccccHhhcccc
Confidence 34678999995 2333322111 138899999999996
No 85
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=79.94 E-value=0.88 Score=29.81 Aligned_cols=44 Identities=27% Similarity=0.612 Sum_probs=29.3
Q ss_pred cccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC----CCCCcccCC
Q 043654 323 TCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL----NATCPVCRN 367 (390)
Q Consensus 323 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~----~~~CP~CR~ 367 (390)
.|.||...-..+ .+..--.|...||..|+++=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488888753333 34444469999999999764433 234999975
No 86
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=78.93 E-value=0.48 Score=32.58 Aligned_cols=48 Identities=23% Similarity=0.524 Sum_probs=32.6
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC----CCCCcccCCcC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL----NATCPVCRNSP 369 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~----~~~CP~CR~~~ 369 (390)
...+..|.||.+. ++ +..--.|...||..|+.+-+.. .-.||.|+...
T Consensus 6 d~~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GE-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCC---SS-CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCC---CC-EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 3456789999863 33 3333358899999999865533 23599998754
No 87
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=77.28 E-value=1.9 Score=40.79 Aligned_cols=46 Identities=30% Similarity=0.462 Sum_probs=30.7
Q ss_pred CCcccccccccCCCCcEEEcCCCCCc--ccHhhHHHHHhC--CCCCcccCCcC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHC--FHADCVDEWLRL--NATCPVCRNSP 369 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~--FH~~Ci~~wl~~--~~~CP~CR~~~ 369 (390)
...|||=+..+.. .+|-.. |.|+ |-..=+-....+ .-.||+|.+.+
T Consensus 249 SL~CPlS~~ri~~--PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 249 SLQCPISYTRMKY--PSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp ESBCTTTSSBCSS--EEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred eecCCCccccccc--cCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCccc
Confidence 4689988887664 467777 9998 544444333333 34599999875
No 88
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.26 E-value=0.4 Score=32.27 Aligned_cols=46 Identities=24% Similarity=0.670 Sum_probs=31.6
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC----CCCCcccCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL----NATCPVCRN 367 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~----~~~CP~CR~ 367 (390)
...+..|.||.+. ++. ..--.|...||..|+++=|.. .-.||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g~l-l~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQL-LMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCC-EECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeE-EEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4557889999874 433 334459999999999875533 224888854
No 89
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=77.04 E-value=2 Score=29.81 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=26.5
Q ss_pred CCCCcccccccccCCCCcEEEcC-CCCCcccHhhHH
Q 043654 319 PDDNTCPICLAEYKPKETLKTIP-ECTHCFHADCVD 353 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~-~C~H~FH~~Ci~ 353 (390)
.....|++|...+..++..+.-- .|.--||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 44678999999988776665555 699999999984
No 90
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=76.96 E-value=2.7 Score=27.65 Aligned_cols=44 Identities=23% Similarity=0.361 Sum_probs=30.3
Q ss_pred cccccccccCCCCcEEEcC-CCCCcccHhhHHHH----HhCCCCCcccC
Q 043654 323 TCPICLAEYKPKETLKTIP-ECTHCFHADCVDEW----LRLNATCPVCR 366 (390)
Q Consensus 323 ~C~ICl~~~~~~~~~~~l~-~C~H~FH~~Ci~~w----l~~~~~CP~CR 366 (390)
.|.||...+.+++..+.-- .|..-||..|+.-- ...+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4779988886555444444 48889999998532 13567799885
No 91
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=76.84 E-value=0.58 Score=32.66 Aligned_cols=47 Identities=26% Similarity=0.634 Sum_probs=33.1
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC----CCCCcccCCc
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL----NATCPVCRNS 368 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~----~~~CP~CR~~ 368 (390)
..++..|.||... ++ +..--.|.-.||..|+.+=|.. .-.||.|+..
T Consensus 5 ~~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 5 QKNEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CSCCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 4567899999864 43 3344459999999999865533 2359999764
No 92
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.67 E-value=3.1 Score=29.95 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=33.5
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHH-----hCCCCCcccCCcC
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWL-----RLNATCPVCRNSP 369 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl-----~~~~~CP~CR~~~ 369 (390)
.....| ||...+......+.--.|..-||..|+.--. .....||.|+...
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 345667 9999876444333333599999999995322 1356799998754
No 93
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=76.31 E-value=0.49 Score=33.93 Aligned_cols=52 Identities=21% Similarity=0.439 Sum_probs=35.7
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHh----CCCCCcccCCcCCC
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLR----LNATCPVCRNSPAR 371 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~----~~~~CP~CR~~~~~ 371 (390)
.+...|.||..... ++....--.|.-.||..|+..-+. ..-.||.|+..+..
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 44567999988754 433444445999999999986543 24469999876543
No 94
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=75.80 E-value=1.8 Score=32.05 Aligned_cols=47 Identities=26% Similarity=0.625 Sum_probs=33.8
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC----CCCCcccCCc
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL----NATCPVCRNS 368 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~----~~~CP~CR~~ 368 (390)
..++..|.+|... ++ +..--.|.-.||..|+++=|.. .-.||.|+..
T Consensus 22 d~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 4567899999975 43 3334458899999999876543 2359999864
No 95
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=74.44 E-value=0.85 Score=38.81 Aligned_cols=46 Identities=26% Similarity=0.608 Sum_probs=33.6
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC----CCCCcccCCcC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL----NATCPVCRNSP 369 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~----~~~CP~CR~~~ 369 (390)
++..|.||... ++ +..--.|.-.||..|+.+-+.. .-.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 46789999854 44 4444458999999999887654 23599998754
No 96
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=72.87 E-value=0.94 Score=39.36 Aligned_cols=47 Identities=26% Similarity=0.611 Sum_probs=34.4
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC----CCCCcccCCcC
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL----NATCPVCRNSP 369 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~----~~~CP~CR~~~ 369 (390)
.++..|.+|... ..+..--.|...||..|+.+-+.. .-.||.|+..-
T Consensus 5 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 456789999854 345555568999999999887654 23599998753
No 97
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=72.39 E-value=1.2 Score=34.44 Aligned_cols=39 Identities=15% Similarity=0.414 Sum_probs=27.2
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHh
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLR 357 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~ 357 (390)
..++..|.||.+.=+..+.+.= ..|...||..|++..+.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C-~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFC-TTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEEC-SSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCcCCeEC-CCCCCCcChHHhCCccc
Confidence 3467899999886322222333 45999999999988764
No 98
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=70.56 E-value=1.3 Score=34.40 Aligned_cols=46 Identities=28% Similarity=0.600 Sum_probs=31.3
Q ss_pred CcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC----CCCCcccCC
Q 043654 322 NTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL----NATCPVCRN 367 (390)
Q Consensus 322 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~----~~~CP~CR~ 367 (390)
..|.||.+.-.+.+.+..--.|...||..|+++-|.. .-.||.||.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3688998753333344444469999999999876543 235999975
No 99
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.70 E-value=2.2 Score=30.44 Aligned_cols=48 Identities=25% Similarity=0.457 Sum_probs=32.5
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHH---------HhCCCCCcccCCcCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEW---------LRLNATCPVCRNSPA 370 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~w---------l~~~~~CP~CR~~~~ 370 (390)
...| ||...+..+..|.-- .|..-||..|+.-- ......||.|+..-.
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd-~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCD-RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECS-SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCEE-ECCCccCCCCEEEeC-CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 4667 898887643444433 49999999999422 125678999986543
No 100
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=67.16 E-value=3.2 Score=44.16 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=45.2
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCC-CcccHhhHHHHHhCCCCCcccCCcCCCCCCCc
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECT-HCFHADCVDEWLRLNATCPVCRNSPARLPPLP 376 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~-H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~~~~ 376 (390)
..+...|||-++-+.++ .++| -| +.|-+..|.+|+..+.+||+=|.++......|
T Consensus 888 iP~~F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liP 943 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTP 943 (968)
T ss_dssp SCGGGBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEE
T ss_pred CcHHhCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccc
Confidence 34578899999998876 4566 76 68999999999999999999999887655444
No 101
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=65.76 E-value=24 Score=25.31 Aligned_cols=41 Identities=17% Similarity=0.321 Sum_probs=31.1
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL 358 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~ 358 (390)
......|.+|.|.+++..-|.--..=+|.|+-.|-...+++
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 34568999999999876555433234799999999999865
No 102
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=64.95 E-value=1.1 Score=30.54 Aligned_cols=46 Identities=24% Similarity=0.665 Sum_probs=31.9
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC----CCCCcccCCcC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL----NATCPVCRNSP 369 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~----~~~CP~CR~~~ 369 (390)
.+..|.||... ++. ..--.|.-.||..|+.+=+.. .-.||.|+...
T Consensus 4 ~~~~C~vC~~~---g~l-l~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---GQL-LMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---SSC-EECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---CcE-EEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 46789999874 433 334459999999999865533 23599996643
No 103
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=63.52 E-value=6.4 Score=31.88 Aligned_cols=45 Identities=22% Similarity=0.437 Sum_probs=32.4
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHh-----------CCCCCcccCC
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLR-----------LNATCPVCRN 367 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~-----------~~~~CP~CR~ 367 (390)
..+..|.||.+- ++ +..--.|-..||..||++=+. ..=.||+|+.
T Consensus 61 g~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 457899999875 44 344445999999999997552 1335999975
No 104
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=62.34 E-value=12 Score=28.76 Aligned_cols=34 Identities=26% Similarity=0.575 Sum_probs=23.7
Q ss_pred CCCccccccccc-----CCCCcEEEcCCCCCcccHhhHH
Q 043654 320 DDNTCPICLAEY-----KPKETLKTIPECTHCFHADCVD 353 (390)
Q Consensus 320 ~~~~C~ICl~~~-----~~~~~~~~l~~C~H~FH~~Ci~ 353 (390)
....|.+|+..= ..++++..-..|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 356899998752 1233444445699999999995
No 105
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=60.58 E-value=2.4 Score=30.55 Aligned_cols=52 Identities=19% Similarity=0.378 Sum_probs=33.4
Q ss_pred CCCCcccccccccCCCCcEEEc-CCCCCcccHhhHHHHH---------hCCCCCcccCCcCCC
Q 043654 319 PDDNTCPICLAEYKPKETLKTI-PECTHCFHADCVDEWL---------RLNATCPVCRNSPAR 371 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l-~~C~H~FH~~Ci~~wl---------~~~~~CP~CR~~~~~ 371 (390)
.....| ||......+..|.-- +.|..-||..|+.--- ..+..||.|+..-.+
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~ 75 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGP 75 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCC
Confidence 345778 898875444333333 0499999999995321 135679999875443
No 106
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=60.41 E-value=5.8 Score=27.93 Aligned_cols=25 Identities=28% Similarity=0.642 Sum_probs=15.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhccC
Q 043654 243 MVGAGVPTMLCLLGLACIICAKLNS 267 (390)
Q Consensus 243 ~i~~~i~~~l~~~~i~~~i~~~~r~ 267 (390)
+.|.++++++++++|++++..+.|.
T Consensus 21 igGLifA~vLfi~GI~iilS~kcrC 45 (74)
T 2zxe_G 21 VVGLIVAAVLCVIGIIILLAGKCRC 45 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC---
T ss_pred eccchhHHHHHHHHHHHHHcCcccc
Confidence 3455566677888888887777655
No 107
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=59.95 E-value=4.3 Score=30.62 Aligned_cols=47 Identities=21% Similarity=0.376 Sum_probs=31.6
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC---CCCCcccCCc
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL---NATCPVCRNS 368 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~---~~~CP~CR~~ 368 (390)
+...| ||......+..|. --.|.-.||..|+..=+.. .-.||.|+..
T Consensus 27 d~vrC-iC~~~~~~~~mi~-Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMIC-CDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEE-BTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCEEe-ECCCccCCCcEEE-cCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 34567 8988766554443 4459999999999763322 3469999753
No 108
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.63 E-value=1.2 Score=33.39 Aligned_cols=49 Identities=22% Similarity=0.400 Sum_probs=33.4
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC----CCCCcccCCc
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL----NATCPVCRNS 368 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~----~~~CP~CR~~ 368 (390)
.+...|.||...-.. +.+..--.|...||..|+.+=|.. .-.||.|+..
T Consensus 14 ~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 446789999886432 334444469999999999854433 2349999764
No 109
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=59.32 E-value=5.6 Score=27.31 Aligned_cols=51 Identities=20% Similarity=0.481 Sum_probs=35.2
Q ss_pred CCCCcccccccccCC-CCcEEEcCCCCCcccHhhHHHHHh-------CCCCCcccCCcC
Q 043654 319 PDDNTCPICLAEYKP-KETLKTIPECTHCFHADCVDEWLR-------LNATCPVCRNSP 369 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~-~~~~~~l~~C~H~FH~~Ci~~wl~-------~~~~CP~CR~~~ 369 (390)
.++..|.||...... ...+..-..|.-.||..|+.+=+. ..-.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 457899999986533 345555557999999999986331 234599886543
No 110
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=59.15 E-value=9.6 Score=24.14 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhhcc
Q 043654 244 VGAGVPTMLCLLGLACIICAKLN 266 (390)
Q Consensus 244 i~~~i~~~l~~~~i~~~i~~~~r 266 (390)
++.++++.+++++++...+..+.
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~ 35 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFM 35 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHHHHHHHHHHHh
Confidence 34444555677777777777643
No 111
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=58.18 E-value=6.7 Score=29.95 Aligned_cols=50 Identities=18% Similarity=0.405 Sum_probs=35.5
Q ss_pred CCcccccccccCCCCcEEEcC-CCCCcccHhhHHHHH----------hCCCCCcccCCcCC
Q 043654 321 DNTCPICLAEYKPKETLKTIP-ECTHCFHADCVDEWL----------RLNATCPVCRNSPA 370 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~-~C~H~FH~~Ci~~wl----------~~~~~CP~CR~~~~ 370 (390)
...|.||...+.+......-- .|..-||..|+.--- ..+..||.|+....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 457999999987665555543 589999999985321 13456999987643
No 112
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=57.45 E-value=2.3 Score=35.59 Aligned_cols=49 Identities=20% Similarity=0.477 Sum_probs=33.8
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHH-----hCCCCCcccCCc
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWL-----RLNATCPVCRNS 368 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl-----~~~~~CP~CR~~ 368 (390)
.+...| ||.....++.....--.|...||..|+.--. ...-.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 456789 9998876554444444699999999995321 235579999864
No 113
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=57.07 E-value=7.6 Score=23.92 Aligned_cols=8 Identities=25% Similarity=0.613 Sum_probs=3.1
Q ss_pred ehhhhhhH
Q 043654 240 IAIMVGAG 247 (390)
Q Consensus 240 ~~i~i~~~ 247 (390)
..+++++.
T Consensus 13 ~~I~~~vv 20 (41)
T 2k9y_A 13 LAVIGGVA 20 (41)
T ss_dssp THHHHHHH
T ss_pred EEEEeehh
Confidence 33344433
No 114
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=56.48 E-value=9.7 Score=27.67 Aligned_cols=37 Identities=16% Similarity=0.351 Sum_probs=26.9
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHH
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEW 355 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~w 355 (390)
.+...|.+|...|..-..--.-..||++|+..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 4467899999999865432333469999999997654
No 115
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=55.99 E-value=2.8 Score=29.34 Aligned_cols=48 Identities=21% Similarity=0.465 Sum_probs=31.8
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHH---hCCCCCcccCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWL---RLNATCPVCRN 367 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl---~~~~~CP~CR~ 367 (390)
..+...| ||..... ++....--.|..-||..|+.--- .....||.|+.
T Consensus 16 ~~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3456778 9988765 33333333599999999986432 23456988865
No 116
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=55.94 E-value=12 Score=26.26 Aligned_cols=47 Identities=26% Similarity=0.598 Sum_probs=29.6
Q ss_pred CCCCcccccccccCCCCcEEEcCC--CC-CcccHhhHHHHHhC----CCCCcccCCcCC
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPE--CT-HCFHADCVDEWLRL----NATCPVCRNSPA 370 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~--C~-H~FH~~Ci~~wl~~----~~~CP~CR~~~~ 370 (390)
.+...| ||..... ++ ...--. |. ..||..|+. |.. +-.||.|+..-.
T Consensus 14 ~~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp TSCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 445678 8988642 33 332233 55 689999998 433 346999987543
No 117
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=54.70 E-value=2 Score=30.91 Aligned_cols=44 Identities=32% Similarity=0.671 Sum_probs=28.4
Q ss_pred cccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC----C-CCCcccCC
Q 043654 323 TCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL----N-ATCPVCRN 367 (390)
Q Consensus 323 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~----~-~~CP~CR~ 367 (390)
.|.||...-. ++.+..--.|...||..|+++-|.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d-~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCC-CcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 5667766532 2344444468899999999976543 2 35998875
No 118
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=54.29 E-value=5.8 Score=27.40 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHHhhhhccC
Q 043654 244 VGAGVPTMLCLLGLACIICAKLNS 267 (390)
Q Consensus 244 i~~~i~~~l~~~~i~~~i~~~~r~ 267 (390)
.|.+++++++++++++++..+.|.
T Consensus 20 gGLifA~vLfi~GI~iilS~kcrC 43 (67)
T 2jp3_A 20 GGLIFGGLLCIAGIALALSGKCKC 43 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cchhhHHHHHHHHHHHHHcCcccc
Confidence 355556667777887777766444
No 119
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.27 E-value=1.8 Score=31.99 Aligned_cols=54 Identities=22% Similarity=0.454 Sum_probs=37.1
Q ss_pred CCCcccccccccCC-CCcEEEcCCCCCcccHhhHHHHHh--------CCCCCcccCCcCCCCC
Q 043654 320 DDNTCPICLAEYKP-KETLKTIPECTHCFHADCVDEWLR--------LNATCPVCRNSPARLP 373 (390)
Q Consensus 320 ~~~~C~ICl~~~~~-~~~~~~l~~C~H~FH~~Ci~~wl~--------~~~~CP~CR~~~~~~~ 373 (390)
.+..|.||...-.. ...+..--.|...||..|+.+=|. ..-.||.|+.....+.
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~ 77 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMA 77 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCST
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhc
Confidence 35789999986432 245555557999999999987553 1335999987654443
No 120
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=54.13 E-value=9.4 Score=27.58 Aligned_cols=37 Identities=19% Similarity=0.459 Sum_probs=26.8
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHH
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEW 355 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~w 355 (390)
.+...|.+|...|..-..--.-..||++|+..|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 4456899999999854332333469999999997653
No 121
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=53.79 E-value=11 Score=29.18 Aligned_cols=34 Identities=24% Similarity=0.492 Sum_probs=23.4
Q ss_pred CcccccccccCC------CCcEEEcCCCCCcccHhhHHHH
Q 043654 322 NTCPICLAEYKP------KETLKTIPECTHCFHADCVDEW 355 (390)
Q Consensus 322 ~~C~ICl~~~~~------~~~~~~l~~C~H~FH~~Ci~~w 355 (390)
..|.||+..-.. ++++..-..|+..||..|++.+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 469999875421 2344444459999999999765
No 122
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=52.94 E-value=2.6 Score=29.81 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=32.9
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHH----hCCCCCcccCCc
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWL----RLNATCPVCRNS 368 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl----~~~~~CP~CR~~ 368 (390)
.....| ||......++....--.|..-||..|+.--- .....||.|+..
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 345678 7988766554344444599999999986532 234569999764
No 123
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.82 E-value=18 Score=25.67 Aligned_cols=41 Identities=22% Similarity=0.476 Sum_probs=31.7
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCC
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPA 370 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~ 370 (390)
.....|+-|-+.+..++.+.. -+..||.+| ..|-.|+.+|.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 345789999999887766654 367899987 56889988876
No 124
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=52.51 E-value=25 Score=23.22 Aligned_cols=11 Identities=0% Similarity=0.096 Sum_probs=4.2
Q ss_pred hhhhhhHHHHH
Q 043654 241 AIMVGAGVPTM 251 (390)
Q Consensus 241 ~i~i~~~i~~~ 251 (390)
+++++.++.++
T Consensus 10 WiIi~svl~GL 20 (54)
T 2l8s_A 10 WVILLSAFAGL 20 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33433333333
No 125
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.97 E-value=12 Score=27.22 Aligned_cols=37 Identities=16% Similarity=0.431 Sum_probs=25.7
Q ss_pred CCCCCcccccccccCCCCcEEEcCCCCCcccHhhHHH
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDE 354 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~ 354 (390)
..+...|.+|...|..-..--.-..||++|+..|...
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3445789999999975432223335999999999543
No 126
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=51.62 E-value=3.3 Score=35.36 Aligned_cols=45 Identities=29% Similarity=0.707 Sum_probs=31.1
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC----CCCCcccCCcC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL----NATCPVCRNSP 369 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~----~~~CP~CR~~~ 369 (390)
+..|.+|... ++ +..--.|...||..|+.+=+.. .-.||.|+...
T Consensus 2 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4679999864 43 3333358899999999765433 23599998764
No 127
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=51.54 E-value=9.7 Score=28.09 Aligned_cols=36 Identities=14% Similarity=0.399 Sum_probs=26.5
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHH
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEW 355 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~w 355 (390)
+...|.+|...|..-..--.-..||++|+..|...+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 346899999999754433334469999999997664
No 128
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=51.54 E-value=19 Score=25.20 Aligned_cols=50 Identities=18% Similarity=0.402 Sum_probs=33.9
Q ss_pred CCCCCccccccccc-CCCCcEEEcCCCCCcccHhhHHHHH--hCCCCCcccCC
Q 043654 318 KPDDNTCPICLAEY-KPKETLKTIPECTHCFHADCVDEWL--RLNATCPVCRN 367 (390)
Q Consensus 318 ~~~~~~C~ICl~~~-~~~~~~~~l~~C~H~FH~~Ci~~wl--~~~~~CP~CR~ 367 (390)
..++..|.||.+.- .+++.+..--.|.-.||..|+..-. ...=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 45678999998753 3344555555799999999997532 11234888865
No 129
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=51.19 E-value=16 Score=25.38 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHHhhhhccC
Q 043654 244 VGAGVPTMLCLLGLACIICAKLNS 267 (390)
Q Consensus 244 i~~~i~~~l~~~~i~~~i~~~~r~ 267 (390)
.|.++++++++++|++++..+.+.
T Consensus 19 GGLifA~vLfi~GI~iilS~KckC 42 (72)
T 2jo1_A 19 GGLVIAGILFILGILIVLSRRCRC 42 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCcccc
Confidence 355556667777777777766544
No 130
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=50.75 E-value=16 Score=26.81 Aligned_cols=51 Identities=14% Similarity=0.310 Sum_probs=33.6
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHH-------hCCCCCcccCCcC
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWL-------RLNATCPVCRNSP 369 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl-------~~~~~CP~CR~~~ 369 (390)
.+...|.+|...|..-..--.-..||++|+..|....+ +....|-.|-..+
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l 64 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTIL 64 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHH
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHH
Confidence 44568999999998654333344699999999976542 1123477775543
No 131
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=50.75 E-value=19 Score=28.51 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=31.9
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHH------h-----CCCCCcccCCc
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWL------R-----LNATCPVCRNS 368 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl------~-----~~~~CP~CR~~ 368 (390)
..+..|.||.+- .++.---.|-..||..||.+=+ + ..=.|++|+..
T Consensus 55 g~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 356789999864 3444444588999999999742 1 12369999654
No 132
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=50.46 E-value=11 Score=26.43 Aligned_cols=33 Identities=15% Similarity=0.408 Sum_probs=24.0
Q ss_pred CcccccccccCCCCcEEEcCCCCCcccHhhHHH
Q 043654 322 NTCPICLAEYKPKETLKTIPECTHCFHADCVDE 354 (390)
Q Consensus 322 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~ 354 (390)
..|.+|...|..-..--.-..||++|+..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 589999999975433233346999999999643
No 133
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=48.76 E-value=11 Score=29.77 Aligned_cols=35 Identities=17% Similarity=0.450 Sum_probs=25.4
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHH
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDE 354 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~ 354 (390)
....|.+|...|..-..--.-..||++|+..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 35689999999975433233346999999999654
No 134
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=48.51 E-value=8.6 Score=28.56 Aligned_cols=47 Identities=26% Similarity=0.598 Sum_probs=29.2
Q ss_pred CCCCcccccccccCCCCcEEEcCC--CC-CcccHhhHHHHHhC----CCCCcccCCcCC
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPE--CT-HCFHADCVDEWLRL----NATCPVCRNSPA 370 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~--C~-H~FH~~Ci~~wl~~----~~~CP~CR~~~~ 370 (390)
.+...| ||..... ++ ...--. |. ..||..|+. |.. +-.||.|+..-.
T Consensus 34 ~e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 445678 9988643 32 222223 44 579999997 332 346999987543
No 135
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=47.14 E-value=20 Score=27.39 Aligned_cols=47 Identities=19% Similarity=0.458 Sum_probs=30.3
Q ss_pred CCCCCcccccccccCCCCcEEEcC--CCCCcccHhhHHHHHhC----CCCCcccCCcCC
Q 043654 318 KPDDNTCPICLAEYKPKETLKTIP--ECTHCFHADCVDEWLRL----NATCPVCRNSPA 370 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~~~~~~~~l~--~C~H~FH~~Ci~~wl~~----~~~CP~CR~~~~ 370 (390)
..++..|.+|.+. + ++..-- .|-..||..|+. |.. .-.||.|+-.+.
T Consensus 12 ~~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 12 QMHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp CSSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 4567889999842 3 333332 388999999998 543 224887765443
No 136
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=46.41 E-value=3.5 Score=32.39 Aligned_cols=50 Identities=18% Similarity=0.383 Sum_probs=31.9
Q ss_pred CCCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCc
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNS 368 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~ 368 (390)
.....|..|...|..-..--.-..||.+|+..|..........|-.|-..
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 34568999999997543333344699999999977766556668777553
No 137
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=46.31 E-value=8.1 Score=23.16 Aligned_cols=22 Identities=14% Similarity=0.018 Sum_probs=8.8
Q ss_pred hhhhHHHHHHHHHHHHHHhhhh
Q 043654 243 MVGAGVPTMLCLLGLACIICAK 264 (390)
Q Consensus 243 ~i~~~i~~~l~~~~i~~~i~~~ 264 (390)
+.++..+.+++++++.+.++.|
T Consensus 11 aagVvglll~vii~l~~~~~iR 32 (35)
T 1iij_A 11 IATVVGVLLFLILVVVVGILIK 32 (35)
T ss_dssp HHHHHHHHHHHHHTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhheEEe
Confidence 3333333333333444444444
No 138
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.30 E-value=5 Score=28.82 Aligned_cols=45 Identities=22% Similarity=0.543 Sum_probs=29.9
Q ss_pred CcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC-----CCCCcccCC
Q 043654 322 NTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL-----NATCPVCRN 367 (390)
Q Consensus 322 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~-----~~~CP~CR~ 367 (390)
-.|.||...=. +..+..--.|...||..|+++=|.. .=.||.|+.
T Consensus 27 c~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 37889986432 3344444469999999999864432 235888865
No 139
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.71 E-value=22 Score=24.68 Aligned_cols=41 Identities=20% Similarity=0.407 Sum_probs=31.8
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
...|+.|-+.+..++.+.. -+..||.+| ..|-.|+.+|...
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccCCC
Confidence 4689999999887766543 568999987 5689999888654
No 140
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=43.62 E-value=15 Score=29.34 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=27.0
Q ss_pred CCCCCcccccccccC-CCCcEEEcCCCCCcccHhhHH
Q 043654 318 KPDDNTCPICLAEYK-PKETLKTIPECTHCFHADCVD 353 (390)
Q Consensus 318 ~~~~~~C~ICl~~~~-~~~~~~~l~~C~H~FH~~Ci~ 353 (390)
..+...|++|...|. ....-++-..|.|.++..|-.
T Consensus 52 ~~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 52 GDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SCSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred cCCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 356789999999993 444446666799999998854
No 141
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=42.39 E-value=15 Score=25.68 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=5.5
Q ss_pred CcccccccccCC
Q 043654 322 NTCPICLAEYKP 333 (390)
Q Consensus 322 ~~C~ICl~~~~~ 333 (390)
..|..|...+..
T Consensus 28 F~C~~C~~~L~~ 39 (76)
T 1iml_A 28 LKCEKCGKTLTS 39 (76)
T ss_dssp CBCTTTCCBCCT
T ss_pred CCccccCccCCC
Confidence 444444444443
No 142
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=42.24 E-value=26 Score=25.60 Aligned_cols=52 Identities=19% Similarity=0.378 Sum_probs=34.8
Q ss_pred CCCCCccccccccc-CCCCcEEEcCCCCCcccHhhHHHHHh--CCCCCcccCCcC
Q 043654 318 KPDDNTCPICLAEY-KPKETLKTIPECTHCFHADCVDEWLR--LNATCPVCRNSP 369 (390)
Q Consensus 318 ~~~~~~C~ICl~~~-~~~~~~~~l~~C~H~FH~~Ci~~wl~--~~~~CP~CR~~~ 369 (390)
..++..|.||...- ...+.+..--.|.-.||..|+..-+. ..-.||.|+...
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 34578999999753 22335555556889999999986431 233599997654
No 143
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=42.03 E-value=5.5 Score=27.96 Aligned_cols=44 Identities=32% Similarity=0.661 Sum_probs=28.4
Q ss_pred cccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC-----CCCCcccCC
Q 043654 323 TCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL-----NATCPVCRN 367 (390)
Q Consensus 323 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~-----~~~CP~CR~ 367 (390)
.|.||...=. +..+..--.|...||..|+++=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 5667775422 3344444468899999999864432 235888875
No 144
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.68 E-value=32 Score=23.43 Aligned_cols=42 Identities=17% Similarity=0.400 Sum_probs=29.9
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
...|+-|-+.+...+.+... -+..||.+| ..|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEY--GGQTWHEHC--------FLCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECS--TTCCEETTT--------CBCTTTCCBTTTS
T ss_pred CCCCccCCCccccCccEEEE--CccccCccc--------CeECCCCCcCCCC
Confidence 45799999988865443322 578899887 4688888877653
No 145
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=40.78 E-value=4.5 Score=31.12 Aligned_cols=45 Identities=18% Similarity=0.478 Sum_probs=30.2
Q ss_pred cccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC----CCCCcccCCc
Q 043654 323 TCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL----NATCPVCRNS 368 (390)
Q Consensus 323 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~----~~~CP~CR~~ 368 (390)
.|.||...-.+ +.+..-..|...||..|+++=|.. .-.||.|+.-
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 67788776333 344444569999999999865533 3358888654
No 146
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=39.53 E-value=7.7 Score=22.36 Aligned_cols=28 Identities=21% Similarity=0.471 Sum_probs=19.8
Q ss_pred CcccccccccCCCCcEEEcCCCCCcccHhhH
Q 043654 322 NTCPICLAEYKPKETLKTIPECTHCFHADCV 352 (390)
Q Consensus 322 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci 352 (390)
..|+.|-...-..+.+. - =|..||+.|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~-~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--C-LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--S-SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--E-CCeEecccCC
Confidence 47899988776654433 2 5788999884
No 147
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.17 E-value=37 Score=23.13 Aligned_cols=41 Identities=20% Similarity=0.403 Sum_probs=29.3
Q ss_pred CCcccccccccCC--CCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCC
Q 043654 321 DNTCPICLAEYKP--KETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPAR 371 (390)
Q Consensus 321 ~~~C~ICl~~~~~--~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~ 371 (390)
...|+-|-+.+.. .+.+... -+..||.+| ..|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a--~~~~wH~~C--------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISF--EERQWHNDC--------FNCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEEC--SSCEECTTT--------CBCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceEEE--CCcccCccc--------CEeccCCCcCCC
Confidence 4679999998885 3333322 578999887 468889888764
No 148
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=38.29 E-value=8.1 Score=26.06 Aligned_cols=43 Identities=28% Similarity=0.634 Sum_probs=27.2
Q ss_pred CCCcccccccccCCCCcEEEcCC--CC-CcccHhhHHHHHhC----CCCCcccCC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPE--CT-HCFHADCVDEWLRL----NATCPVCRN 367 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~FH~~Ci~~wl~~----~~~CP~CR~ 367 (390)
+...| ||..... + ....--. |. ..||..|+. |.. +-.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 45667 8988642 3 3333334 55 689999998 433 345999865
No 149
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=38.18 E-value=6.6 Score=23.42 Aligned_cols=16 Identities=19% Similarity=0.667 Sum_probs=10.8
Q ss_pred CCCcccccccccCCCC
Q 043654 320 DDNTCPICLAEYKPKE 335 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~ 335 (390)
+...||||+.++...+
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 3467888887776543
No 150
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=37.95 E-value=3.5 Score=28.74 Aligned_cols=46 Identities=22% Similarity=0.378 Sum_probs=28.6
Q ss_pred CCcccccccccCCCCcEEEc-CCCCCcccHhhHHHH---Hh-----CCCCCcccCC
Q 043654 321 DNTCPICLAEYKPKETLKTI-PECTHCFHADCVDEW---LR-----LNATCPVCRN 367 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l-~~C~H~FH~~Ci~~w---l~-----~~~~CP~CR~ 367 (390)
...| ||......+..|.-- +.|..-||..|+.-- .. .+..||.||.
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 4567 797765555444332 248889999998321 01 1456999974
No 151
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=37.74 E-value=16 Score=31.60 Aligned_cols=34 Identities=18% Similarity=0.509 Sum_probs=25.1
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHH
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDE 354 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~ 354 (390)
+..|.+|...|..-..--.-..||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4799999999975433233446999999999654
No 152
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.62 E-value=25 Score=23.97 Aligned_cols=42 Identities=17% Similarity=0.397 Sum_probs=29.6
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
...|+.|-+.+...+.+... =+..||.+| ..|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCCC
Confidence 35799999988876544332 467899887 4588888877544
No 153
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.45 E-value=42 Score=22.78 Aligned_cols=40 Identities=20% Similarity=0.427 Sum_probs=25.0
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPA 370 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~ 370 (390)
...|+.|-+.+...+.+... =+..||.+| ..|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVA--LDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEEC--SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEE--CCCeEcccC--------CcccccCCcCC
Confidence 45688888777654322222 457788776 45777777764
No 154
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=36.90 E-value=22 Score=24.09 Aligned_cols=43 Identities=21% Similarity=0.521 Sum_probs=31.8
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
....|+-|-+.+...+.+... =+..||.+|+ .|-.|+.++...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 356899999998877654432 5678999885 688888877554
No 155
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=36.09 E-value=7.9 Score=29.47 Aligned_cols=27 Identities=22% Similarity=0.652 Sum_probs=16.8
Q ss_pred CCCCcccHhhHHHHHhCCCCCcccCCcCCCCC
Q 043654 342 ECTHCFHADCVDEWLRLNATCPVCRNSPARLP 373 (390)
Q Consensus 342 ~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~~ 373 (390)
+||+.|. .=+.....||.|+++-...+
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBCCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccCCc
Confidence 4888881 11233567999999754443
No 156
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.90 E-value=38 Score=23.76 Aligned_cols=42 Identities=19% Similarity=0.410 Sum_probs=30.8
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
...|+.|-+.+..++.+... =+..||.+| ..|-.|+.+|...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDC--------FTCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTT--------CCCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEEEE--Ccccccccc--------CchhhCCCccCCC
Confidence 46899999998876654332 477999887 4688888877654
No 157
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.77 E-value=44 Score=23.62 Aligned_cols=42 Identities=24% Similarity=0.460 Sum_probs=30.5
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
....|+.|-+.+...+.+.. -+..||.+| ..|-.|+..|...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcCCC
Confidence 45689999999876665542 577899988 4577787776544
No 158
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=35.40 E-value=9.1 Score=25.88 Aligned_cols=43 Identities=26% Similarity=0.623 Sum_probs=26.6
Q ss_pred CCCcccccccccCCCCcEEEcCC--CC-CcccHhhHHHHHhC----CCCCcccCC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPE--CT-HCFHADCVDEWLRL----NATCPVCRN 367 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~FH~~Ci~~wl~~----~~~CP~CR~ 367 (390)
+...| ||..... + ....--. |. ..||..|+. |.. +-.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 45667 8988632 3 3333334 44 689999998 433 345998864
No 159
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.61 E-value=20 Score=31.28 Aligned_cols=35 Identities=14% Similarity=0.475 Sum_probs=25.9
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHH
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEW 355 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~w 355 (390)
...|.+|...|..-..--.-..||++|+..|-...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 46899999999855433344469999999996644
No 160
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=33.90 E-value=34 Score=32.10 Aligned_cols=47 Identities=26% Similarity=0.483 Sum_probs=31.7
Q ss_pred CCcccccccccCCCCcEEEcCCCCCc--ccHhhHHHHHhC--CCCCcccCCcCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHC--FHADCVDEWLRL--NATCPVCRNSPA 370 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~--FH~~Ci~~wl~~--~~~CP~CR~~~~ 370 (390)
...|||=+..+.. .+|-.. |.|+ |-..=+-....+ .-.||+|.+.+.
T Consensus 215 SL~CPlS~~ri~~--P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTI--PCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSS--EEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceecc--CCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 4679988877764 467777 9998 555444444333 345999999764
No 161
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=33.73 E-value=6.9 Score=25.55 Aligned_cols=41 Identities=20% Similarity=0.540 Sum_probs=26.0
Q ss_pred ccccccCCCCcEEEcCCCCCcccHhhHHHHH---hCCCCCcccCC
Q 043654 326 ICLAEYKPKETLKTIPECTHCFHADCVDEWL---RLNATCPVCRN 367 (390)
Q Consensus 326 ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl---~~~~~CP~CR~ 367 (390)
||......+..|. --.|..-||..|+.--- .....||.|+.
T Consensus 8 ~C~~~~~~~~MI~-Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIE-CNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEE-CTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEE-cCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6776654223333 33499999999986432 23556998875
No 162
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.57 E-value=35 Score=23.55 Aligned_cols=43 Identities=21% Similarity=0.502 Sum_probs=30.5
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
....|+-|-+.+...+.+... -+..||.+| ..|-.|+.++...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCCC
Confidence 357899999998765554322 467899887 4588888877554
No 163
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=32.56 E-value=2.9 Score=32.49 Aligned_cols=45 Identities=18% Similarity=0.485 Sum_probs=29.6
Q ss_pred cccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC----CCCCcccCCc
Q 043654 323 TCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL----NATCPVCRNS 368 (390)
Q Consensus 323 ~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~----~~~CP~CR~~ 368 (390)
.|.||...-..+ .+..--.|...||..|+++=|.. .-.||.|+..
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECccccch
Confidence 688888754333 34444459999999999864433 2248888654
No 164
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.41 E-value=61 Score=22.30 Aligned_cols=41 Identities=17% Similarity=0.402 Sum_probs=28.7
Q ss_pred CCcccccccccCC--CCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCC
Q 043654 321 DNTCPICLAEYKP--KETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPAR 371 (390)
Q Consensus 321 ~~~C~ICl~~~~~--~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~ 371 (390)
...|+.|-+.+.. .+++... -+..||.+| ..|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~C--------F~C~~C~~~L~~ 47 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICF--QDSQWHSEC--------FNCGKCSVSLVG 47 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEE--TTEEEEGGG--------CBCTTTCCBCSS
T ss_pred CCCCccCCCcccCCCCceeEEE--CCcccCccc--------CChhhCCCcCCC
Confidence 4579999998885 3333222 578899988 468888887753
No 165
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=31.34 E-value=18 Score=27.04 Aligned_cols=13 Identities=31% Similarity=0.925 Sum_probs=11.0
Q ss_pred cccHhhHHHHHhC
Q 043654 346 CFHADCVDEWLRL 358 (390)
Q Consensus 346 ~FH~~Ci~~wl~~ 358 (390)
-||+.|+..|++.
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999853
No 166
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=31.22 E-value=8.7 Score=26.23 Aligned_cols=45 Identities=24% Similarity=0.539 Sum_probs=26.9
Q ss_pred CCCcccccccccCCCCcEEEcCC--CC-CcccHhhHHHHH--hCCCCCcccCC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPE--CT-HCFHADCVDEWL--RLNATCPVCRN 367 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~FH~~Ci~~wl--~~~~~CP~CR~ 367 (390)
+...| ||.... .+ ....--. |. ..||..|+.--- ..+-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 45667 898863 24 2333334 44 799999997211 12346999965
No 167
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=30.98 E-value=19 Score=26.93 Aligned_cols=12 Identities=33% Similarity=0.966 Sum_probs=10.7
Q ss_pred cccHhhHHHHHh
Q 043654 346 CFHADCVDEWLR 357 (390)
Q Consensus 346 ~FH~~Ci~~wl~ 357 (390)
-||+.|+..|++
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 168
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=30.15 E-value=11 Score=26.57 Aligned_cols=47 Identities=23% Similarity=0.527 Sum_probs=30.9
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHh-----CCCCCcccCCc
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLR-----LNATCPVCRNS 368 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~-----~~~~CP~CR~~ 368 (390)
...| ||...+..+.....--.|.--||..|+.---. ....||.|+..
T Consensus 10 ~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 10 PVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 3445 88887654444444445999999999954321 34679999764
No 169
>1brz_A Brazzein; sweet protein, cysteine-stabilized alpha-beta; HET: PCA; NMR {Pentadiplandra brazzeana} SCOP: g.3.7.5 PDB: 2brz_A* 2kgq_A 2kyq_A
Probab=29.02 E-value=21 Score=23.29 Aligned_cols=19 Identities=16% Similarity=0.571 Sum_probs=15.0
Q ss_pred CCCCeeeeccCCcceeEeecc
Q 043654 209 KGGGRCGFKNNSSTEIGCLSL 229 (390)
Q Consensus 209 ~sgG~Cg~~~~~~~~f~C~~~ 229 (390)
+.||+|.++..++ +.|+|.
T Consensus 32 AkgG~C~~~e~~~--vkClCD 50 (54)
T 1brz_A 32 ARSGECFYDEKRN--LQCICD 50 (54)
T ss_dssp CSEEEEECCTTCC--CEEEEE
T ss_pred CcCceeeecCCCC--eEEecc
Confidence 5799999987653 789885
No 170
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=28.32 E-value=15 Score=32.04 Aligned_cols=46 Identities=30% Similarity=0.623 Sum_probs=26.9
Q ss_pred CcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC-----CCCCcccCCc
Q 043654 322 NTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL-----NATCPVCRNS 368 (390)
Q Consensus 322 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~-----~~~CP~CR~~ 368 (390)
..|.+|...=. +..+..--.|...||..|+++=|.. .=.||.|+.+
T Consensus 175 c~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 46899987422 2333344459999999999965432 2359999753
No 171
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=25.98 E-value=32 Score=23.68 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=25.7
Q ss_pred CCCCcccccccccCCCCcEEEcCCC-CCcccHhhHHHH
Q 043654 319 PDDNTCPICLAEYKPKETLKTIPEC-THCFHADCVDEW 355 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~~~~~~l~~C-~H~FH~~Ci~~w 355 (390)
.+..-|.||.++ ..+|-+- | +-+|+..|..+-
T Consensus 6 ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 446789999997 5577776 8 799999998775
No 172
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.55 E-value=93 Score=22.23 Aligned_cols=41 Identities=29% Similarity=0.553 Sum_probs=28.7
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
...|+-|-+.+...+.++ . -+..||.+| ..|-.|+.+|...
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL--A-NQQVFHISC--------FRCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE--C-SSSEEETTT--------CBCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeEE--E-CCCEECCCC--------CeeCCCCCCCCCC
Confidence 467889988887665443 2 577888887 4577777776554
No 173
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.65 E-value=1e+02 Score=21.35 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=28.8
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
....|+-|-+.+. ++.+ ..-+..||.+| ..|-.|+.+|...
T Consensus 14 ~~~~C~~C~~~I~-~~~v---~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPL---IFKNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCCBCTTTCCBCC-SCCC---CCSSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCCccCCCEec-ceEE---EECcceeCCCC--------CEeCCCCCccCCC
Confidence 3567999998887 3332 22577888877 5688888887654
No 174
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.49 E-value=10 Score=25.64 Aligned_cols=37 Identities=19% Similarity=0.512 Sum_probs=25.0
Q ss_pred CCcccccccccCCCCcEEEcC--C--CCCcccHhhHHHHHh
Q 043654 321 DNTCPICLAEYKPKETLKTIP--E--CTHCFHADCVDEWLR 357 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~--~--C~H~FH~~Ci~~wl~ 357 (390)
...||-|...++..+....+. . |+|.|+..|..+|-.
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 457888888877665433333 2 778888888888753
No 175
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=24.23 E-value=28 Score=23.47 Aligned_cols=42 Identities=29% Similarity=0.645 Sum_probs=29.3
Q ss_pred CcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhC-CCCCccc
Q 043654 322 NTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRL-NATCPVC 365 (390)
Q Consensus 322 ~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~-~~~CP~C 365 (390)
..|--|+..|.+. ..-.-++|++.|+-+| |..+.. -..||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 4699999998643 2344677999999999 444433 3469887
No 176
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=24.23 E-value=14 Score=26.55 Aligned_cols=14 Identities=21% Similarity=0.819 Sum_probs=12.8
Q ss_pred CCCCcccHhhHHHH
Q 043654 342 ECTHCFHADCVDEW 355 (390)
Q Consensus 342 ~C~H~FH~~Ci~~w 355 (390)
.|+|.|+..|-..|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 59999999999888
No 177
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=24.07 E-value=15 Score=25.65 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=12.7
Q ss_pred HHHHhCCCCCcccCCcCC
Q 043654 353 DEWLRLNATCPVCRNSPA 370 (390)
Q Consensus 353 ~~wl~~~~~CP~CR~~~~ 370 (390)
++||..--.||.|+.++.
T Consensus 2 d~~LLeiL~CP~ck~~L~ 19 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLK 19 (69)
T ss_dssp -CCGGGTCCCTTTCCCCE
T ss_pred ChHHHhheeCCCCCCcCe
Confidence 456666778999988764
No 178
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=23.28 E-value=17 Score=20.54 Aligned_cols=13 Identities=23% Similarity=0.741 Sum_probs=8.6
Q ss_pred CCCCcccCCcCCC
Q 043654 359 NATCPVCRNSPAR 371 (390)
Q Consensus 359 ~~~CP~CR~~~~~ 371 (390)
+..||+|+..+.+
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 3468888876543
No 179
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.25 E-value=83 Score=21.09 Aligned_cols=41 Identities=20% Similarity=0.536 Sum_probs=28.7
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
....|+-|-+.+. ++.+.. -+..||.+| ..|-.|+.+|...
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a---~~~~~H~~C--------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 4 GSSGCHQCGEFII-GRVIKA---MNNSWHPEC--------FRCDLCQEVLADI 44 (70)
T ss_dssp CSSBCSSSCCBCC-SCCEEE---TTEEECTTT--------SBCSSSCCBCSSS
T ss_pred CCCcCccCCCEec-ceEEEE---CcccccccC--------CEeCCCCCcCCCC
Confidence 3467999988877 333332 467888887 4688888887655
No 180
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=23.20 E-value=43 Score=25.76 Aligned_cols=35 Identities=14% Similarity=0.336 Sum_probs=23.1
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHH
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWL 356 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl 356 (390)
.-..|..|-..+..++..... =+..||..|..+.+
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~--~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLI--NSDIVCEQDIYEWT 69 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEEC--SSSEEEGGGHHHHH
T ss_pred ccCccccCCCCCCCCCcEEee--CCEEEcHHHhHHHh
Confidence 357778887777555544333 46778888877765
No 181
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=23.04 E-value=13 Score=25.77 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=13.1
Q ss_pred HHHHhCCCCCcccCCcCC
Q 043654 353 DEWLRLNATCPVCRNSPA 370 (390)
Q Consensus 353 ~~wl~~~~~CP~CR~~~~ 370 (390)
++||..--.||.|+.++.
T Consensus 4 d~~LLeiL~CP~ck~~L~ 21 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLR 21 (67)
T ss_dssp CGGGTCCCBCTTTCCBCE
T ss_pred CHHHHHHhCCCCCCCcCe
Confidence 456666778999988763
No 182
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=21.46 E-value=36 Score=23.87 Aligned_cols=41 Identities=27% Similarity=0.496 Sum_probs=29.2
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
...|+.|-+.+..++.++. -+..||.+| ..|-.|+.++...
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCC--------FLCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSS--------EECSSSCCEECSS
T ss_pred CCcCcCcCccccCceeEEe---CCccccccc--------CccCCCCCCCCCC
Confidence 4679999998876665443 567889887 4578888877554
No 183
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=21.40 E-value=47 Score=27.04 Aligned_cols=34 Identities=21% Similarity=0.549 Sum_probs=24.9
Q ss_pred CCCCcccccccccCCC-CcEEEcCCCCCcccHhhH
Q 043654 319 PDDNTCPICLAEYKPK-ETLKTIPECTHCFHADCV 352 (390)
Q Consensus 319 ~~~~~C~ICl~~~~~~-~~~~~l~~C~H~FH~~Ci 352 (390)
.++..|++|...|..- ..-++-..|.|.++..|=
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 3578999999987432 233455569999999996
No 184
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=21.14 E-value=1.2e+02 Score=18.87 Aligned_cols=11 Identities=0% Similarity=-0.185 Sum_probs=4.2
Q ss_pred hhhhhhHHHHH
Q 043654 241 AIMVGAGVPTM 251 (390)
Q Consensus 241 ~i~i~~~i~~~ 251 (390)
++++...+.++
T Consensus 11 wiIi~s~l~GL 21 (42)
T 2k1a_A 11 WWVLVGVLGGL 21 (42)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 185
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=21.06 E-value=20 Score=34.25 Aligned_cols=50 Identities=12% Similarity=0.271 Sum_probs=0.0
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHh-------CCCCCcccCCcC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLR-------LNATCPVCRNSP 369 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~-------~~~~CP~CR~~~ 369 (390)
....|.+|...|..-..-.....||++||..|-..++. ....|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 35689999999874432222335999999999987641 134577775544
No 186
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}
Probab=21.02 E-value=60 Score=21.32 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=16.9
Q ss_pred CccccCC----CCeeeecc--CCcceeEeeccCCCC
Q 043654 204 CGDCEKG----GGRCGFKN--NSSTEIGCLSLHHRE 233 (390)
Q Consensus 204 C~~C~~s----gG~Cg~~~--~~~~~f~C~~~~~~~ 233 (390)
|++|..+ ||.|.... +....|.|.|.+...
T Consensus 8 ~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~ 43 (55)
T 3u7u_G 8 CAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFT 43 (55)
T ss_dssp CCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEE
T ss_pred CCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCc
Confidence 4455442 89996321 112238999987553
No 187
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.51 E-value=96 Score=20.70 Aligned_cols=39 Identities=18% Similarity=0.479 Sum_probs=27.5
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPAR 371 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~ 371 (390)
...|+-|-+.+.. +.+ .. -+..||.+| ..|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GGV--TY-REQPWHKEC--------FVCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCCBCCS-SEE--ES-SSSEEETTT--------SBCSSSCCBCTT
T ss_pred CCCCcccCCeecc-ceE--EE-CccccCCCC--------CccCCCCCcCCc
Confidence 4579999888874 332 22 578899887 468888887754
No 188
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=20.46 E-value=85 Score=21.48 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=29.7
Q ss_pred CCcccccccccCC---CCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCCC
Q 043654 321 DNTCPICLAEYKP---KETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPARL 372 (390)
Q Consensus 321 ~~~C~ICl~~~~~---~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~~ 372 (390)
...|+-|-+.+.. .+.+... =+..||.+| ..|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 59 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAY--EGQSWHDYC--------FHCKKCSVNLANK 59 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEE--TTEEEETTT--------CBCSSSCCBCTTS
T ss_pred CccCcccCCcccCCCCCceeEEE--CcceeCccc--------CEehhcCCCCCCC
Confidence 4679999998885 3333222 467999987 5688999888643
No 189
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.45 E-value=78 Score=22.02 Aligned_cols=41 Identities=27% Similarity=0.394 Sum_probs=28.2
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPAR 371 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~ 371 (390)
...|+.|-+.+...+.+. ..=+..||.+| ..|-.|+.+|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~--~a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSREL--FYEDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCBC--CCSSCCCBTTT--------SBCTTTCCBCSS
T ss_pred CCcCccCCCccccCcEEE--EeCCccccccC--------CeecCCCCccCC
Confidence 357999999888433332 22478899887 458888887764
No 190
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.43 E-value=87 Score=21.68 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=27.4
Q ss_pred CCCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCC
Q 043654 320 DDNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPA 370 (390)
Q Consensus 320 ~~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~ 370 (390)
....|+-|-+.+.. +.+. . -+..||.+|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~-~~~~--a-~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VFVK--L-RDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCS-SCEE--C-SSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccC-cEEE--E-CcceeCcCcC--------eeCCCCCCCC
Confidence 35689999998874 3222 2 5789999884 5888887764
No 191
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=20.37 E-value=97 Score=22.46 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=26.2
Q ss_pred CCcccccccccCCCCcEEEcCCCCCcccHhhHHHHHhCCCCCcccCCcCCC
Q 043654 321 DNTCPICLAEYKPKETLKTIPECTHCFHADCVDEWLRLNATCPVCRNSPAR 371 (390)
Q Consensus 321 ~~~C~ICl~~~~~~~~~~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~~~~ 371 (390)
-..|..|...+... ..... =+.+|+..|..+ .....|..|...|..
T Consensus 33 CF~C~~C~~~L~~~-~~~~~--~g~~yC~~cy~~--~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 33 CFRCAKCLHPLANE-TFVAK--DNKILCNKCTTR--EDSPKCKGCFKAIVA 78 (101)
T ss_dssp TCCCSSSCCCTTSS-CCEEE--TTEEECHHHHTT--CCCCBCSSSCCBCCS
T ss_pred CCcccccCCCCCcC-eeECc--CCEEEChhHhhh--hcCCccccCCCcccc
Confidence 46677777776432 22211 356666666533 224568888877753
Done!