Query 043655
Match_columns 512
No_of_seqs 196 out of 2055
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 07:03:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.6 1.6E-17 3.4E-22 157.2 -2.2 332 27-402 73-434 (483)
2 KOG2120 SCF ubiquitin ligase, 99.5 1.5E-15 3.2E-20 137.9 0.1 256 26-350 98-374 (419)
3 smart00579 FBD domain in FBox 99.3 2.5E-12 5.5E-17 95.9 6.6 72 438-512 1-72 (72)
4 PF08387 FBD: FBD; InterPro: 99.2 2.4E-11 5.3E-16 83.1 4.2 50 429-478 1-50 (51)
5 KOG4341 F-box protein containi 99.1 7.8E-12 1.7E-16 119.1 -2.3 285 163-481 138-437 (483)
6 PLN00113 leucine-rich repeat r 98.8 1.2E-08 2.6E-13 115.7 8.6 169 138-317 93-270 (968)
7 PF12937 F-box-like: F-box-lik 98.7 7.8E-09 1.7E-13 69.8 3.2 35 26-60 1-35 (47)
8 PLN00113 leucine-rich repeat r 98.7 1.7E-08 3.8E-13 114.4 8.0 194 139-350 70-271 (968)
9 KOG2120 SCF ubiquitin ligase, 98.6 2.5E-09 5.3E-14 97.9 -4.5 193 191-399 186-392 (419)
10 PLN03210 Resistant to P. syrin 98.5 1.8E-07 4E-12 106.9 8.4 109 153-271 602-715 (1153)
11 cd00116 LRR_RI Leucine-rich re 98.5 6.2E-08 1.3E-12 95.2 2.0 19 459-477 296-314 (319)
12 KOG1909 Ran GTPase-activating 98.4 4E-08 8.7E-13 92.1 -1.1 176 215-405 89-281 (382)
13 PLN03210 Resistant to P. syrin 98.4 7.5E-07 1.6E-11 102.0 8.5 171 138-318 611-813 (1153)
14 PF00646 F-box: F-box domain; 98.3 2E-07 4.4E-12 63.2 1.3 37 26-62 3-39 (48)
15 KOG4194 Membrane glycoprotein 98.3 4.9E-08 1.1E-12 97.2 -3.4 104 138-250 173-280 (873)
16 cd00116 LRR_RI Leucine-rich re 98.2 1.5E-06 3.2E-11 85.4 6.0 250 187-481 20-289 (319)
17 smart00256 FBOX A Receptor for 98.2 1.4E-06 3.1E-11 56.7 3.3 33 29-61 1-33 (41)
18 KOG3207 Beta-tubulin folding c 98.1 3.2E-07 6.9E-12 88.6 -1.1 175 138-317 121-311 (505)
19 KOG4194 Membrane glycoprotein 98.0 1.2E-06 2.6E-11 87.6 0.5 316 114-471 127-470 (873)
20 PRK15387 E3 ubiquitin-protein 97.7 0.00018 3.9E-09 77.5 9.7 136 138-298 201-355 (788)
21 KOG3207 Beta-tubulin folding c 97.6 2.3E-06 4.9E-11 82.9 -5.0 207 162-402 120-334 (505)
22 KOG1947 Leucine rich repeat pr 97.6 5.2E-06 1.1E-10 86.5 -2.8 41 23-63 42-82 (482)
23 KOG1909 Ran GTPase-activating 97.5 2.4E-05 5.1E-10 73.9 0.6 210 188-402 90-333 (382)
24 KOG1947 Leucine rich repeat pr 97.5 9.4E-06 2E-10 84.5 -2.8 64 187-252 240-308 (482)
25 PRK15370 E3 ubiquitin-protein 97.4 0.00018 3.9E-09 77.8 5.7 59 339-404 367-425 (754)
26 PF14580 LRR_9: Leucine-rich r 97.3 3.5E-05 7.6E-10 67.6 -1.1 55 189-249 41-98 (175)
27 PF14580 LRR_9: Leucine-rich r 97.3 0.00015 3.3E-09 63.7 2.7 107 285-403 42-149 (175)
28 PRK15387 E3 ubiquitin-protein 97.2 0.0008 1.7E-08 72.7 7.4 155 163-353 201-356 (788)
29 KOG3665 ZYG-1-like serine/thre 97.0 0.00023 4.9E-09 76.3 0.6 155 239-402 122-283 (699)
30 KOG0444 Cytoskeletal regulator 96.7 3.9E-05 8.4E-10 77.7 -6.8 48 153-204 93-140 (1255)
31 KOG0618 Serine/threonine phosp 96.7 0.0001 2.2E-09 78.0 -4.3 62 335-403 448-509 (1081)
32 KOG4237 Extracellular matrix p 96.7 0.00039 8.4E-09 66.9 -0.3 99 283-393 272-374 (498)
33 PRK15370 E3 ubiquitin-protein 96.7 0.0036 7.7E-08 67.9 6.8 198 138-377 178-377 (754)
34 KOG0444 Cytoskeletal regulator 96.6 8.1E-05 1.8E-09 75.5 -5.3 87 153-249 22-113 (1255)
35 KOG1259 Nischarin, modulator o 96.6 0.00084 1.8E-08 62.4 1.5 103 284-403 306-408 (490)
36 KOG2982 Uncharacterized conser 96.6 0.0018 3.9E-08 60.2 3.3 183 188-404 69-259 (418)
37 KOG0618 Serine/threonine phosp 96.5 0.0005 1.1E-08 73.0 -1.2 225 139-402 44-272 (1081)
38 KOG3665 ZYG-1-like serine/thre 96.3 0.0003 6.5E-09 75.4 -3.7 106 188-297 146-262 (699)
39 COG5238 RNA1 Ran GTPase-activa 96.0 0.003 6.6E-08 58.0 1.4 117 282-403 154-281 (388)
40 PF13855 LRR_8: Leucine rich r 95.8 0.0052 1.1E-07 43.7 1.7 39 163-204 1-39 (61)
41 PF13855 LRR_8: Leucine rich r 95.3 0.014 2.9E-07 41.5 2.4 57 190-250 1-60 (61)
42 PRK15386 type III secretion pr 95.1 0.03 6.4E-07 55.8 4.9 135 161-316 50-186 (426)
43 KOG0281 Beta-TrCP (transducin 94.9 0.012 2.5E-07 55.6 1.4 36 23-58 72-111 (499)
44 KOG4658 Apoptotic ATPase [Sign 94.1 0.21 4.6E-06 55.4 9.1 168 116-296 478-653 (889)
45 KOG2123 Uncharacterized conser 94.1 0.0061 1.3E-07 56.3 -2.3 52 261-315 20-71 (388)
46 KOG1259 Nischarin, modulator o 93.9 0.045 9.7E-07 51.2 2.9 100 286-405 285-385 (490)
47 KOG2982 Uncharacterized conser 93.8 0.021 4.6E-07 53.3 0.6 176 187-373 94-285 (418)
48 KOG2997 F-box protein FBX9 [Ge 93.8 0.032 6.8E-07 52.4 1.6 36 23-58 104-144 (366)
49 KOG2739 Leucine-rich acidic nu 93.7 0.019 4E-07 52.8 0.0 71 333-406 85-155 (260)
50 PF07723 LRR_2: Leucine Rich R 93.5 0.074 1.6E-06 30.4 2.3 22 191-212 1-22 (26)
51 KOG4658 Apoptotic ATPase [Sign 93.5 0.0097 2.1E-07 65.8 -2.6 80 161-249 569-652 (889)
52 KOG1859 Leucine-rich repeat pr 93.2 0.014 3.1E-07 60.9 -1.7 59 284-349 231-289 (1096)
53 PLN03215 ascorbic acid mannose 93.1 0.066 1.4E-06 52.7 2.7 37 26-62 4-41 (373)
54 KOG0617 Ras suppressor protein 92.9 0.0075 1.6E-07 51.6 -3.5 49 152-204 68-116 (264)
55 KOG0472 Leucine-rich repeat pr 92.7 0.00077 1.7E-08 65.1 -10.8 100 286-404 207-307 (565)
56 KOG1644 U2-associated snRNP A' 92.6 0.17 3.8E-06 44.8 4.3 58 187-250 61-124 (233)
57 PF12799 LRR_4: Leucine Rich r 92.1 0.14 3E-06 33.5 2.4 16 235-250 20-35 (44)
58 KOG4237 Extracellular matrix p 91.9 0.031 6.6E-07 54.3 -1.2 100 139-250 45-151 (498)
59 PRK15386 type III secretion pr 91.6 0.27 5.8E-06 49.2 4.9 115 188-318 50-167 (426)
60 KOG3864 Uncharacterized conser 91.5 0.029 6.3E-07 49.5 -1.7 53 216-268 123-184 (221)
61 KOG1644 U2-associated snRNP A' 91.2 0.11 2.5E-06 45.9 1.6 109 286-405 43-151 (233)
62 PF12799 LRR_4: Leucine Rich r 90.7 0.12 2.6E-06 33.9 1.0 15 188-202 22-36 (44)
63 PF13013 F-box-like_2: F-box-l 90.4 0.34 7.3E-06 38.7 3.5 39 25-63 21-63 (109)
64 KOG2739 Leucine-rich acidic nu 90.4 0.059 1.3E-06 49.5 -0.9 34 217-250 64-102 (260)
65 KOG0617 Ras suppressor protein 89.9 0.018 4E-07 49.3 -4.2 107 283-405 77-184 (264)
66 KOG0472 Leucine-rich repeat pr 89.5 0.073 1.6E-06 51.9 -1.1 38 363-404 501-538 (565)
67 PLN03150 hypothetical protein; 87.8 0.42 9.2E-06 51.4 3.2 79 165-250 420-501 (623)
68 smart00367 LRR_CC Leucine-rich 86.3 0.37 8.1E-06 27.4 1.0 18 238-255 1-18 (26)
69 PLN03150 hypothetical protein; 86.1 0.63 1.4E-05 50.1 3.4 69 154-229 433-501 (623)
70 COG5238 RNA1 Ran GTPase-activa 85.2 3.5 7.6E-05 38.6 7.1 176 285-481 30-225 (388)
71 COG4886 Leucine-rich repeat (L 84.6 0.31 6.6E-06 49.4 0.1 37 334-376 250-286 (394)
72 KOG2123 Uncharacterized conser 84.3 0.043 9.4E-07 50.8 -5.4 102 286-400 20-123 (388)
73 KOG3864 Uncharacterized conser 84.3 0.12 2.5E-06 45.9 -2.6 67 187-255 122-192 (221)
74 COG4886 Leucine-rich repeat (L 81.6 0.89 1.9E-05 46.0 2.1 166 162-350 115-288 (394)
75 KOG1859 Leucine-rich repeat pr 80.8 0.16 3.5E-06 53.4 -3.5 102 260-378 187-290 (1096)
76 KOG0274 Cdc4 and related F-box 80.3 0.78 1.7E-05 48.1 1.2 40 20-59 102-141 (537)
77 PF08387 FBD: FBD; InterPro: 66.2 9.6 0.00021 25.7 3.4 36 367-402 14-50 (51)
78 PF13504 LRR_7: Leucine rich r 63.2 2.8 6E-05 21.1 0.2 11 191-201 2-12 (17)
79 KOG0531 Protein phosphatase 1, 61.5 2.9 6.3E-05 42.6 0.3 81 283-377 116-196 (414)
80 KOG0531 Protein phosphatase 1, 56.6 5.8 0.00013 40.4 1.5 56 188-250 116-173 (414)
81 KOG3763 mRNA export factor TAP 53.2 4.6 9.9E-05 41.6 0.1 61 188-250 216-281 (585)
82 PF09372 PRANC: PRANC domain; 51.2 10 0.00022 29.6 1.7 25 24-48 70-94 (97)
83 PF13306 LRR_5: Leucine rich r 47.5 14 0.0003 30.1 2.1 75 161-246 10-88 (129)
84 PF13516 LRR_6: Leucine Rich r 44.3 12 0.00027 20.4 0.9 13 238-250 1-13 (24)
85 smart00579 FBD domain in FBox 44.0 38 0.00082 24.5 3.8 39 367-405 5-44 (72)
86 PF00560 LRR_1: Leucine Rich R 39.1 19 0.00041 19.2 1.1 10 164-173 1-10 (22)
87 KOG4408 Putative Mg2+ and Co2+ 31.1 12 0.00027 35.8 -0.7 34 26-59 8-41 (386)
88 KOG3763 mRNA export factor TAP 30.9 21 0.00046 36.9 0.8 78 163-245 218-307 (585)
89 KOG3926 F-box proteins [Amino 27.3 32 0.00069 32.1 1.2 48 24-71 200-254 (332)
90 COG4829 CatC1 Muconolactone de 26.0 20 0.00043 26.9 -0.3 36 29-64 11-48 (98)
91 smart00370 LRR Leucine-rich re 21.6 41 0.0009 18.6 0.5 14 190-203 2-15 (26)
92 smart00369 LRR_TYP Leucine-ric 21.6 41 0.0009 18.6 0.5 14 190-203 2-15 (26)
93 PF08004 DUF1699: Protein of u 21.1 1.5E+02 0.0032 24.3 3.7 32 368-402 18-49 (131)
94 KOG3445 Mitochondrial/chloropl 20.9 1.2E+02 0.0026 25.2 3.2 43 469-511 20-62 (145)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.63 E-value=1.6e-17 Score=157.24 Aligned_cols=332 Identities=19% Similarity=0.219 Sum_probs=216.0
Q ss_pred CCCChHHHHHHHccCCchhhHHHhhhcHhHHHh------hccCCcccccCCCccccccCcccCcCCCCCcccchhhHhHH
Q 043655 27 SDLPDAILHHILFLLPIKSIAQTCTLSKRWRSL------WCSFPDLDFNTINPLAISSGKYNTSSGAKRPRFISLKEMDL 100 (512)
Q Consensus 27 s~LPdevl~~Ils~L~~~d~~rts~lSrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (512)
-.||.|++.+|||+|+++...|++.+|+-|..+ |.++.-.+|....+. ..
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g------------------------~V 128 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDG------------------------GV 128 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCC------------------------cc
Confidence 459999999999999999999999999999864 776655555432111 23
Q ss_pred HHHHHhhhcccCceeeeEEeeccCcchhhHHHHHHH-hcCCceeEEEeccCCCCCCCccee-----ccCCccEEEEeccc
Q 043655 101 ISQVLSIRDKHSYIRVLRFRAHLSFSCLNGLIRRAI-RHNVEELDIEVATDDYFNLPRCVI-----TSDSLRVFKLRSRY 174 (512)
Q Consensus 101 v~~~l~~~~~~~~i~~l~l~~~~~~~~~~~wi~~~~-~~~v~~L~l~~~~~~~~~lp~~l~-----~~~~L~~L~L~~~~ 174 (512)
|..++... +..++.++++...... ....-.++. .+++++|.+..+. .+....+ .|+.|++|.|-.|.
T Consensus 129 V~~~~~Rc--gg~lk~LSlrG~r~v~-~sslrt~~~~CpnIehL~l~gc~----~iTd~s~~sla~~C~~l~~l~L~~c~ 201 (483)
T KOG4341|consen 129 VENMISRC--GGFLKELSLRGCRAVG-DSSLRTFASNCPNIEHLALYGCK----KITDSSLLSLARYCRKLRHLNLHSCS 201 (483)
T ss_pred eehHhhhh--ccccccccccccccCC-cchhhHHhhhCCchhhhhhhcce----eccHHHHHHHHHhcchhhhhhhcccc
Confidence 34443322 2457777777633221 111111222 2678888665443 2222111 37888888887742
Q ss_pred CccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccc-----cchhcccccccceeeeccc
Q 043655 175 RGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYG-----LKQLKVGCRALEDLTLDNC 249 (512)
Q Consensus 175 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~-----l~~l~~~cp~Le~L~l~~c 249 (512)
. ++-......+.+|++|+.|.+++|.-....+++.+. .+|..|+++.+.+|.+ +..+...|+.+-.+++..|
T Consensus 202 ~-iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~--rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c 278 (483)
T KOG4341|consen 202 S-ITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ--RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHC 278 (483)
T ss_pred h-hHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh--ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhh
Confidence 1 111111224567889999999888877766777766 4888888888888873 3445567788888888888
Q ss_pred cCccceeEe-----ccCcceEEEeeeccccCC-CceEEEeCCCcceEEeeccccCCC----ccccCcccceeeEEeeEEc
Q 043655 250 IQLCGLDIF-----GTKLERLRVASCFDAYCD-KSWVKIDASKLKVLNWEYNAITAS----SSLENLASLHEASVGFILL 319 (512)
Q Consensus 250 ~~l~~~~v~-----~~~L~~L~l~~c~~~~~~-~~~~~i~~p~L~~L~~~~~~~~~~----~~l~~~~~L~~l~l~~~~~ 319 (512)
..+++..+- ...|+.|...+|.+..+. ...+..++++|+.+.+.++..-.. ..--+.+.|+++++.-+..
T Consensus 279 ~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 279 NQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL 358 (483)
T ss_pred ccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence 766655422 367888888888765443 334556789999999998753111 2234788999988887665
Q ss_pred ccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccc---cccccccccccceEEEEeeccCCcHHHHHHHHhhCCCC
Q 043655 320 HEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRN---YFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSI 396 (512)
Q Consensus 320 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~L 396 (512)
..+. .+..+-.+|+.++.|.++...+ +.+.. ..........|..|.|..+... .+....++..||+|
T Consensus 359 ~~d~------tL~sls~~C~~lr~lslshce~--itD~gi~~l~~~~c~~~~l~~lEL~n~p~i--~d~~Le~l~~c~~L 428 (483)
T KOG4341|consen 359 ITDG------TLASLSRNCPRLRVLSLSHCEL--ITDEGIRHLSSSSCSLEGLEVLELDNCPLI--TDATLEHLSICRNL 428 (483)
T ss_pred ehhh------hHhhhccCCchhccCChhhhhh--hhhhhhhhhhhccccccccceeeecCCCCc--hHHHHHHHhhCccc
Confidence 4442 4677788899999999985432 22221 1112335667888888876433 35778999999999
Q ss_pred cEEEEE
Q 043655 397 HTLILK 402 (512)
Q Consensus 397 e~L~l~ 402 (512)
|.+++-
T Consensus 429 eri~l~ 434 (483)
T KOG4341|consen 429 ERIELI 434 (483)
T ss_pred ceeeee
Confidence 996653
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.5e-15 Score=137.90 Aligned_cols=256 Identities=18% Similarity=0.198 Sum_probs=154.8
Q ss_pred cCCCChHHHHHHHccCCchhhHHHhhhcHhHHHh------hccCCcccccCCCccccccCcccCcCCCCCcccchhhHhH
Q 043655 26 ISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSL------WCSFPDLDFNTINPLAISSGKYNTSSGAKRPRFISLKEMD 99 (512)
Q Consensus 26 is~LPdevl~~Ils~L~~~d~~rts~lSrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (512)
+..|||||+..||+.|+.||+.+.+.|||||.++ |..++ +...... .+
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lD---l~~r~i~-----------------------p~ 151 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLD---LTGRNIH-----------------------PD 151 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeec---cCCCccC-----------------------hh
Confidence 6789999999999999999999999999999864 65532 2111100 02
Q ss_pred HHHHHHhhhcccCceeeeEEeeccCcchhhHHHHHHHhcCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCcccc
Q 043655 100 LISQVLSIRDKHSYIRVLRFRAHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRL 179 (512)
Q Consensus 100 ~v~~~l~~~~~~~~i~~l~l~~~~~~~~~~~wi~~~~~~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~ 179 (512)
...+.+. .+|..+++--.... -.+...++ . ..-+.|++|+|++ ..++.
T Consensus 152 ~l~~l~~-----rgV~v~Rlar~~~~--~prlae~~-------------------~----~frsRlq~lDLS~--s~it~ 199 (419)
T KOG2120|consen 152 VLGRLLS-----RGVIVFRLARSFMD--QPRLAEHF-------------------S----PFRSRLQHLDLSN--SVITV 199 (419)
T ss_pred HHHHHHh-----CCeEEEEcchhhhc--Cchhhhhh-------------------h----hhhhhhHHhhcch--hheeH
Confidence 2232222 12333333210000 00000000 0 0124466666666 12222
Q ss_pred CCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccc-----cchhcccccccceeeeccccCccc
Q 043655 180 PPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYG-----LKQLKVGCRALEDLTLDNCIQLCG 254 (512)
Q Consensus 180 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~-----l~~l~~~cp~Le~L~l~~c~~l~~ 254 (512)
...-.+...|..|+.|+|++.++.++ +..-+ +.-.+|+.|+|..|+| ++-++..|..|.+|+|..|.....
T Consensus 200 stl~~iLs~C~kLk~lSlEg~~LdD~--I~~~i--AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~ 275 (419)
T KOG2120|consen 200 STLHGILSQCSKLKNLSLEGLRLDDP--IVNTI--AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTE 275 (419)
T ss_pred HHHHHHHHHHHhhhhccccccccCcH--HHHHH--hccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccch
Confidence 11112345688888888888888664 22212 3467888899988875 445678899999999999976543
Q ss_pred ee---E--eccCcceEEEeeeccccC--CCceEEEeCCCcceEEeeccccCCC---ccccCcccceeeEEeeEEcccchh
Q 043655 255 LD---I--FGTKLERLRVASCFDAYC--DKSWVKIDASKLKVLNWEYNAITAS---SSLENLASLHEASVGFILLHEDLT 324 (512)
Q Consensus 255 ~~---v--~~~~L~~L~l~~c~~~~~--~~~~~~i~~p~L~~L~~~~~~~~~~---~~l~~~~~L~~l~l~~~~~~~~~~ 324 (512)
.. | .+++|+.|++.+|..... +...+...+|+|..|+++++..-.. ..+..++.|++++++-|......
T Consensus 276 ~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~- 354 (419)
T KOG2120|consen 276 KVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPE- 354 (419)
T ss_pred hhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChH-
Confidence 31 1 138899999988854321 1233445789999999887643211 34557888898888877644332
Q ss_pred HHHHhHHHHHhhcCCcccEeeecchh
Q 043655 325 SAKLQSVSNFLSGLSHARSLTLESPC 350 (512)
Q Consensus 325 ~~~~~~~~~~l~~l~~l~~L~l~~~~ 350 (512)
..--+.+.|.+..|++.+..
T Consensus 355 ------~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 355 ------TLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ------HeeeeccCcceEEEEecccc
Confidence 22336677888888887654
No 3
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=99.34 E-value=2.5e-12 Score=95.91 Aligned_cols=72 Identities=24% Similarity=0.482 Sum_probs=61.9
Q ss_pred hhhhcCccEEEEeeeccchhHHHHHHHHHhcCccccceEEEecccCccchHHHHHHHHHhccCCccCCCceeeeC
Q 043655 438 KPFLNNLNVVEIHGFLECENEVSLAKFLLKHGKALQEMTLCTGHCNYRDSLRRQKVRSQMMGFSWASSNARIAFH 512 (512)
Q Consensus 438 ~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~L~~m~i~~~~~~~~~~~~~~~~~~~l~~~~~as~~~~v~~~ 512 (512)
+|+.+||++|+|.+|.|...|+++++|+++||+.||+|+|..++... + ....+.++|..++|||++|+|.|+
T Consensus 1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~--~-~~~~i~~~L~~~~~aS~~c~i~~~ 72 (72)
T smart00579 1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDD--D-EKLEILKELLSLPRASSSCQVQFL 72 (72)
T ss_pred CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCc--c-HHHHHHHHHHhCcCCCCceEEEeC
Confidence 36788999999999999999999999999999999999999875332 2 225556789999999999999985
No 4
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=99.18 E-value=2.4e-11 Score=83.07 Aligned_cols=50 Identities=36% Similarity=0.661 Sum_probs=46.1
Q ss_pred hhhccccCchhhhcCccEEEEeeeccchhHHHHHHHHHhcCccccceEEE
Q 043655 429 YWQSQSQTLKPFLNNLNVVEIHGFLECENEVSLAKFLLKHGKALQEMTLC 478 (512)
Q Consensus 429 ~w~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~L~~m~i~ 478 (512)
+|.+...+++|+.+||+.|++.+|.|.++|++|++|+++||++||+|+|.
T Consensus 1 ~W~~~~~~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 1 FWIEPSSVPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred CCCCCCCCccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 36556667999999999999999999999999999999999999999996
No 5
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.08 E-value=7.8e-12 Score=119.07 Aligned_cols=285 Identities=20% Similarity=0.199 Sum_probs=174.1
Q ss_pred CCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccc-----cchhccc
Q 043655 163 DSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYG-----LKQLKVG 237 (512)
Q Consensus 163 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~-----l~~l~~~ 237 (512)
..|+.|.|++|. .....+.......+|++++|.+.+|...++..+..+. ..|++|+.|+|.+|.. ++.+..+
T Consensus 138 g~lk~LSlrG~r-~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla--~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 138 GFLKELSLRGCR-AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA--RYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred cccccccccccc-cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHH--HhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 457777777742 1222233334567888888888888877766665554 4788888888888763 4456667
Q ss_pred ccccceeeeccccCccceeEec-----cCcceEEEeeeccccCC-CceEEEeCCCcceEEeeccccCCCc----cccCcc
Q 043655 238 CRALEDLTLDNCIQLCGLDIFG-----TKLERLRVASCFDAYCD-KSWVKIDASKLKVLNWEYNAITASS----SLENLA 307 (512)
Q Consensus 238 cp~Le~L~l~~c~~l~~~~v~~-----~~L~~L~l~~c~~~~~~-~~~~~i~~p~L~~L~~~~~~~~~~~----~l~~~~ 307 (512)
||+|++|++..|+.+..-.|.+ ..++.+..++|...... ...+.-.++.+..+++..+..-... .--++.
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 8888888888887665533322 44667767777543222 1122223344444443333211111 112456
Q ss_pred cceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHH
Q 043655 308 SLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLA 387 (512)
Q Consensus 308 ~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~ 387 (512)
.|+.++.+.+...++ ..+..+.+++++|+.|.+..... ..+.........++.|+.|.+..+....+ ..+.
T Consensus 295 ~lq~l~~s~~t~~~d------~~l~aLg~~~~~L~~l~l~~c~~--fsd~~ft~l~rn~~~Le~l~~e~~~~~~d-~tL~ 365 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITD------EVLWALGQHCHNLQVLELSGCQQ--FSDRGFTMLGRNCPHLERLDLEECGLITD-GTLA 365 (483)
T ss_pred HhhhhcccCCCCCch------HHHHHHhcCCCceEEEeccccch--hhhhhhhhhhcCChhhhhhcccccceehh-hhHh
Confidence 667776666655444 34778888999999999986642 33332222444678999999987644332 3588
Q ss_pred HHHhhCCCCcEEEEEeecccchhhhcccccccCccCccchhhhhccccCchhhhcCccEEEEeeeccchhHHHHHHHHHh
Q 043655 388 CLFRSSPSIHTLILKIINDYKIQRRQWNRDLWDMYTSEEEQYWQSQSQTLKPFLNNLNVVEIHGFLECENEVSLAKFLLK 467 (512)
Q Consensus 388 ~~L~~cp~Le~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~ 467 (512)
++-.+||.|++|++.-.. ..++.+-. ......|-..+|.++++.+......+ .-..+.
T Consensus 366 sls~~C~~lr~lslshce---------------~itD~gi~----~l~~~~c~~~~l~~lEL~n~p~i~d~---~Le~l~ 423 (483)
T KOG4341|consen 366 SLSRNCPRLRVLSLSHCE---------------LITDEGIR----HLSSSSCSLEGLEVLELDNCPLITDA---TLEHLS 423 (483)
T ss_pred hhccCCchhccCChhhhh---------------hhhhhhhh----hhhhccccccccceeeecCCCCchHH---HHHHHh
Confidence 999999999999997211 11111101 11223355788999999988776533 223456
Q ss_pred cCccccceEEEecc
Q 043655 468 HGKALQEMTLCTGH 481 (512)
Q Consensus 468 ~a~~L~~m~i~~~~ 481 (512)
+++.||++.++.-.
T Consensus 424 ~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 424 ICRNLERIELIDCQ 437 (483)
T ss_pred hCcccceeeeechh
Confidence 78899998877653
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.78 E-value=1.2e-08 Score=115.69 Aligned_cols=169 Identities=23% Similarity=0.175 Sum_probs=88.6
Q ss_pred cCCceeEEEeccCCCCCCCccee-ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVI-TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS 216 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 216 (512)
..++.|++....- ...+|..++ .+++|++|+|++|.....+|. ..+++|++|+|+++.+.+. +...+ ..
T Consensus 93 ~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-----~~l~~L~~L~Ls~n~~~~~--~p~~~--~~ 162 (968)
T PLN00113 93 PYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-----GSIPNLETLDLSNNMLSGE--IPNDI--GS 162 (968)
T ss_pred CCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCccccccCc-----cccCCCCEEECcCCccccc--CChHH--hc
Confidence 5666666653221 125666666 678888888877432222222 2467788888877776532 11111 25
Q ss_pred Ccccceecccccc---ccchhcccccccceeeeccccCcccee--E-eccCcceEEEeeeccccCCCceEEEeCCCcceE
Q 043655 217 FPHLKKLDLDACY---GLKQLKVGCRALEDLTLDNCIQLCGLD--I-FGTKLERLRVASCFDAYCDKSWVKIDASKLKVL 290 (512)
Q Consensus 217 ~p~L~~L~L~~~~---~l~~l~~~cp~Le~L~l~~c~~l~~~~--v-~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L 290 (512)
+++|+.|+|.++. .+...+..+++|+.|++.+|.....+. + ..++|+.|.+.++......... ....++|++|
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L 241 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHL 241 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEE
Confidence 6777777777764 222334566777777777765322211 1 1256666666655322111111 1234566666
Q ss_pred EeeccccCCC--ccccCcccceeeEEeeE
Q 043655 291 NWEYNAITAS--SSLENLASLHEASVGFI 317 (512)
Q Consensus 291 ~~~~~~~~~~--~~l~~~~~L~~l~l~~~ 317 (512)
++.++.+... ..++++++|+.++++.+
T Consensus 242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred ECcCceeccccChhHhCCCCCCEEECcCC
Confidence 6665543211 23455566666655544
No 7
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.74 E-value=7.8e-09 Score=69.78 Aligned_cols=35 Identities=34% Similarity=0.614 Sum_probs=30.9
Q ss_pred cCCCChHHHHHHHccCCchhhHHHhhhcHhHHHhh
Q 043655 26 ISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLW 60 (512)
Q Consensus 26 is~LPdevl~~Ils~L~~~d~~rts~lSrrWr~lw 60 (512)
|+.||+||+.+||++|+.+|.++++.|||+|+.+-
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999853
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.73 E-value=1.7e-08 Score=114.38 Aligned_cols=194 Identities=19% Similarity=0.120 Sum_probs=125.2
Q ss_pred CCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCc
Q 043655 139 NVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFP 218 (512)
Q Consensus 139 ~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p 218 (512)
.|..|++....- ...+|..+..++.|+.|+|++|.....+|.. ....+++|++|+|+++.+.+.... ..++
T Consensus 70 ~v~~L~L~~~~i-~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~--~~~~l~~L~~L~Ls~n~l~~~~p~------~~l~ 140 (968)
T PLN00113 70 RVVSIDLSGKNI-SGKISSAIFRLPYIQTINLSNNQLSGPIPDD--IFTTSSSLRYLNLSNNNFTGSIPR------GSIP 140 (968)
T ss_pred cEEEEEecCCCc-cccCChHHhCCCCCCEEECCCCccCCcCChH--HhccCCCCCEEECcCCccccccCc------cccC
Confidence 455555543221 1234555667899999999985332244432 233689999999999988653211 3589
Q ss_pred ccceecccccc---ccchhcccccccceeeeccccCcccee--E-eccCcceEEEeeeccccCCCceEEEeCCCcceEEe
Q 043655 219 HLKKLDLDACY---GLKQLKVGCRALEDLTLDNCIQLCGLD--I-FGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNW 292 (512)
Q Consensus 219 ~L~~L~L~~~~---~l~~l~~~cp~Le~L~l~~c~~l~~~~--v-~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~ 292 (512)
+|++|+|.++. .+..-+..+++|+.|++.+|.....+. + ..++|+.|.+.+|......... .-..++|+.|.+
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L 219 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYL 219 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEEC
Confidence 99999999886 234445678999999999986432221 1 2378999999887543211111 125689999999
Q ss_pred eccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchh
Q 043655 293 EYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPC 350 (512)
Q Consensus 293 ~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~ 350 (512)
.++.+... ..++++++|+.+++..+...+. +...+..+++|+.|++..+.
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--------~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP--------IPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccc--------cChhHhCCCCCCEEECcCCe
Confidence 88765432 3467899999999987654221 12335566667777666543
No 9
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2.5e-09 Score=97.92 Aligned_cols=193 Identities=15% Similarity=0.127 Sum_probs=134.0
Q ss_pred ccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc---ccchhcccccccceeeeccccCccceeEe-----ccCc
Q 043655 191 SLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY---GLKQLKVGCRALEDLTLDNCIQLCGLDIF-----GTKL 262 (512)
Q Consensus 191 ~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~---~l~~l~~~cp~Le~L~l~~c~~l~~~~v~-----~~~L 262 (512)
+|+.|+|+...++-. .+..++ +.|.+|+.|.|.+.. .+..-+..-..|+.|+|..|.|++...+. +.+|
T Consensus 186 Rlq~lDLS~s~it~s-tl~~iL--s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVS-TLHGIL--SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHH-HHHHHH--HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 699999998777543 456666 389999999999986 23333445688999999999998765443 3799
Q ss_pred ceEEEeeeccccCCCceEEE-eCCCcceEEeeccccCCC-----ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhh
Q 043655 263 ERLRVASCFDAYCDKSWVKI-DASKLKVLNWEYNAITAS-----SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLS 336 (512)
Q Consensus 263 ~~L~l~~c~~~~~~~~~~~i-~~p~L~~L~~~~~~~~~~-----~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~ 336 (512)
..|++..|....+..+.+.- -.++|..|+++|+.-.-. .....+|+|.+++++.+....+ .+...+-
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-------~~~~~~~ 335 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-------DCFQEFF 335 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-------hHHHHHH
Confidence 99999999765443222222 478999999999753211 2234789999999987654333 2455677
Q ss_pred cCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEE
Q 043655 337 GLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTL 399 (512)
Q Consensus 337 ~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L 399 (512)
.++.|++|.++-+.. . .+.....+...|.|.+|++..+..+ ..+.-+.+.||+|+-=
T Consensus 336 kf~~L~~lSlsRCY~-i--~p~~~~~l~s~psl~yLdv~g~vsd---t~mel~~e~~~~lkin 392 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYD-I--IPETLLELNSKPSLVYLDVFGCVSD---TTMELLKEMLSHLKIN 392 (419)
T ss_pred hcchheeeehhhhcC-C--ChHHeeeeccCcceEEEEeccccCc---hHHHHHHHhCcccccc
Confidence 788999999975541 1 1111124557789999999876332 3567788899998643
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.52 E-value=1.8e-07 Score=106.94 Aligned_cols=109 Identities=23% Similarity=0.268 Sum_probs=64.3
Q ss_pred CCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccccc
Q 043655 153 FNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLK 232 (512)
Q Consensus 153 ~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l~ 232 (512)
..+|..+ ..++|+.|+|.++.. -.++. . ...+++|+.|+|+++.... .+.++ ..+++|++|+|.+|..+.
T Consensus 602 ~~lP~~f-~~~~L~~L~L~~s~l-~~L~~-~--~~~l~~Lk~L~Ls~~~~l~--~ip~l---s~l~~Le~L~L~~c~~L~ 671 (1153)
T PLN03210 602 RCMPSNF-RPENLVKLQMQGSKL-EKLWD-G--VHSLTGLRNIDLRGSKNLK--EIPDL---SMATNLETLKLSDCSSLV 671 (1153)
T ss_pred CCCCCcC-CccCCcEEECcCccc-ccccc-c--cccCCCCCEEECCCCCCcC--cCCcc---ccCCcccEEEecCCCCcc
Confidence 4455543 567888888887421 12222 1 2357888888887654221 11111 357888888888776443
Q ss_pred hh---cccccccceeeeccccCccceeE--eccCcceEEEeeec
Q 043655 233 QL---KVGCRALEDLTLDNCIQLCGLDI--FGTKLERLRVASCF 271 (512)
Q Consensus 233 ~l---~~~cp~Le~L~l~~c~~l~~~~v--~~~~L~~L~l~~c~ 271 (512)
.+ +..+++|+.|++.+|..+..+.. ..++|+.|.+.+|.
T Consensus 672 ~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 672 ELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCS 715 (1153)
T ss_pred ccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence 33 34567777777777766555432 23567777777764
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.46 E-value=6.2e-08 Score=95.19 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=9.0
Q ss_pred HHHHHHHHhcCccccceEE
Q 043655 459 VSLAKFLLKHGKALQEMTL 477 (512)
Q Consensus 459 ~~l~~~ll~~a~~L~~m~i 477 (512)
..+++-+..+++.|+.+.|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~ 314 (319)
T cd00116 296 QLLAESLLEPGNELESLWV 314 (319)
T ss_pred HHHHHHHhhcCCchhhccc
Confidence 4444444444445544444
No 12
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.39 E-value=4e-08 Score=92.13 Aligned_cols=176 Identities=23% Similarity=0.290 Sum_probs=112.7
Q ss_pred CCCcccceecccccc-------ccchhcccccccceeeeccccCccce--eEeccCcceEEEeeeccccCCCceEEEeCC
Q 043655 215 SSFPHLKKLDLDACY-------GLKQLKVGCRALEDLTLDNCIQLCGL--DIFGTKLERLRVASCFDAYCDKSWVKIDAS 285 (512)
Q Consensus 215 ~~~p~L~~L~L~~~~-------~l~~l~~~cp~Le~L~l~~c~~l~~~--~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p 285 (512)
..||+|++|+|+.+- ++..++++|..|++|.|.+|-. ... ...+..|..|.. ....-+.|
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~al~~l~~----------~kk~~~~~ 157 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGRALFELAV----------NKKAASKP 157 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHHHHHHHHH----------HhccCCCc
Confidence 368888888888763 5777888999999999999942 100 000011111110 11222567
Q ss_pred CcceEEeeccccCCC------ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccc
Q 043655 286 KLKVLNWEYNAITAS------SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNY 359 (512)
Q Consensus 286 ~L~~L~~~~~~~~~~------~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~ 359 (512)
.|++|....+...+. ..+...|.|+++.+....+.... ...+..-+..|++|+.|+|.++.+..-.....
T Consensus 158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG----~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEG----VTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCch----hHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 777777766554322 23345578888877765543322 23456678899999999999987644333223
Q ss_pred ccccccccccceEEEEeeccC-CcH-HHHHHHHhhCCCCcEEEEEeec
Q 043655 360 FTNLHTFTNLKSLELHTGFNK-HNV-QGLACLFRSSPSIHTLILKIIN 405 (512)
Q Consensus 360 ~~~~~~~~~L~~L~L~~~~~~-~~~-~~l~~~L~~cp~Le~L~l~~~~ 405 (512)
...++.+++|+.|.++.|... ... .-+..+-+..|+|+.|.+.+..
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence 357788999999999987532 333 3345677788999999987643
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.38 E-value=7.5e-07 Score=101.99 Aligned_cols=171 Identities=20% Similarity=0.202 Sum_probs=100.4
Q ss_pred cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF 217 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 217 (512)
.++.+|++... ....+|..+..+++|+.|+|+++.....+|. ...+++|++|+|.+|..... +..-+ .++
T Consensus 611 ~~L~~L~L~~s--~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~----ls~l~~Le~L~L~~c~~L~~--lp~si--~~L 680 (1153)
T PLN03210 611 ENLVKLQMQGS--KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD----LSMATNLETLKLSDCSSLVE--LPSSI--QYL 680 (1153)
T ss_pred cCCcEEECcCc--cccccccccccCCCCCEEECCCCCCcCcCCc----cccCCcccEEEecCCCCccc--cchhh--hcc
Confidence 35555555432 2334566566788999999987533233432 23578999999988754321 11111 367
Q ss_pred cccceeccccccccchhcc--cccccceeeeccccCccceeEeccCcceEEEeeeccccCC-------Cc----------
Q 043655 218 PHLKKLDLDACYGLKQLKV--GCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCD-------KS---------- 278 (512)
Q Consensus 218 p~L~~L~L~~~~~l~~l~~--~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~-------~~---------- 278 (512)
++|+.|++.+|..+..+-. .+++|+.|.+.+|..+..+.-..++|+.|.+.++...... ..
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSE 760 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchh
Confidence 8899999988876655433 5688888888888766554433456666666554311000 00
Q ss_pred -----------eEEEeCCCcceEEeeccccCC--CccccCcccceeeEEeeEE
Q 043655 279 -----------WVKIDASKLKVLNWEYNAITA--SSSLENLASLHEASVGFIL 318 (512)
Q Consensus 279 -----------~~~i~~p~L~~L~~~~~~~~~--~~~l~~~~~L~~l~l~~~~ 318 (512)
......++|+.|.+.++.... ...++++++|+.+++..|.
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence 000123577777777654211 1335678888888887654
No 14
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.32 E-value=2e-07 Score=63.23 Aligned_cols=37 Identities=51% Similarity=0.714 Sum_probs=31.1
Q ss_pred cCCCChHHHHHHHccCCchhhHHHhhhcHhHHHhhcc
Q 043655 26 ISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCS 62 (512)
Q Consensus 26 is~LPdevl~~Ils~L~~~d~~rts~lSrrWr~lw~~ 62 (512)
|++||+|++.+||++|+.+|.++++.|||+|+++...
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 6789999999999999999999999999999987543
No 15
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.28 E-value=4.9e-08 Score=97.22 Aligned_cols=104 Identities=23% Similarity=0.219 Sum_probs=57.3
Q ss_pred cCCceeEEEeccCCCCCCCccee-ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVI-TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS 216 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 216 (512)
.++++|.+....- ..+...-| +..+|..|+|++|.. -++|... +..+|+|+.|.|..+++.-.+++ +..+
T Consensus 173 ~ni~~L~La~N~I--t~l~~~~F~~lnsL~tlkLsrNri-ttLp~r~--Fk~L~~L~~LdLnrN~irive~l----tFqg 243 (873)
T KOG4194|consen 173 VNIKKLNLASNRI--TTLETGHFDSLNSLLTLKLSRNRI-TTLPQRS--FKRLPKLESLDLNRNRIRIVEGL----TFQG 243 (873)
T ss_pred CCceEEeeccccc--cccccccccccchheeeecccCcc-cccCHHH--hhhcchhhhhhccccceeeehhh----hhcC
Confidence 4677777764332 22222222 455788888887421 2344322 34577888888877776543221 2246
Q ss_pred Ccccceecccccc--cc-chhcccccccceeeecccc
Q 043655 217 FPHLKKLDLDACY--GL-KQLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 217 ~p~L~~L~L~~~~--~l-~~l~~~cp~Le~L~l~~c~ 250 (512)
+|+|+.|.|...+ .+ ...+-+|.++|.|+|....
T Consensus 244 L~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 244 LPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR 280 (873)
T ss_pred chhhhhhhhhhcCcccccCcceeeecccceeecccch
Confidence 7777777776654 11 2344556666666666553
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.24 E-value=1.5e-06 Score=85.36 Aligned_cols=250 Identities=19% Similarity=0.098 Sum_probs=133.6
Q ss_pred ccCcccceEEeeeEEeeCcc--chhhhhcCCCCcccceecccccccc------c---hhcccccccceeeeccccCccce
Q 043655 187 GGFRSLHTLSLSLVILFNQP--CLLDLFTDSSFPHLKKLDLDACYGL------K---QLKVGCRALEDLTLDNCIQLCGL 255 (512)
Q Consensus 187 ~~~~~L~~L~L~~~~~~~~~--~l~~l~~~~~~p~L~~L~L~~~~~l------~---~l~~~cp~Le~L~l~~c~~l~~~ 255 (512)
..++.|+.|.|+++.+.+.. .+...+ ...|+|++|++.++..- . ..+..+++|+.|+|.+|......
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l--~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASAL--RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHH--hhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 45677999999988876532 222222 35677888888765411 1 22334667777777776532100
Q ss_pred eEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC------ccccCc-ccceeeEEeeEEcccchhHHHH
Q 043655 256 DIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS------SSLENL-ASLHEASVGFILLHEDLTSAKL 328 (512)
Q Consensus 256 ~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~------~~l~~~-~~L~~l~l~~~~~~~~~~~~~~ 328 (512)
.-. ...+.-. ++|++|+++++.+... ..+..+ ++|+++++..+..... ..
T Consensus 98 ~~~------------------~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~----~~ 154 (319)
T cd00116 98 CGV------------------LESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA----SC 154 (319)
T ss_pred HHH------------------HHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch----HH
Confidence 000 0000001 3455555554433210 112334 6777777776654321 12
Q ss_pred hHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccC-CcHHHHHHHHhhCCCCcEEEEEeeccc
Q 043655 329 QSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNK-HNVQGLACLFRSSPSIHTLILKIINDY 407 (512)
Q Consensus 329 ~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~l~~~L~~cp~Le~L~l~~~~~~ 407 (512)
..+...+..+++++.|++..+.+............+.+++|++|+|..+.-. .....+...+..+|+|+.|++....-.
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 3345567778889999998776442111111123345579999999865322 233456677888999999999753211
Q ss_pred chhhhcccccccCccCccchhhhhccccCchhhhcCccEEEEeeeccc-hhHHHHHHHHHhcCccccceEEEecc
Q 043655 408 KIQRRQWNRDLWDMYTSEEEQYWQSQSQTLKPFLNNLNVVEIHGFLEC-ENEVSLAKFLLKHGKALQEMTLCTGH 481 (512)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~L~~v~i~~~~g~-~~e~~l~~~ll~~a~~L~~m~i~~~~ 481 (512)
+................|+.+.+.+..-. .....+++.+ .+.+.|+.+.+....
T Consensus 235 -------------------~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~-~~~~~L~~l~l~~N~ 289 (319)
T cd00116 235 -------------------DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVL-AEKESLLELDLRGNK 289 (319)
T ss_pred -------------------hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHH-hcCCCccEEECCCCC
Confidence 00000000000001368899988765432 2444555654 444888888887754
No 17
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.19 E-value=1.4e-06 Score=56.73 Aligned_cols=33 Identities=48% Similarity=0.728 Sum_probs=31.0
Q ss_pred CChHHHHHHHccCCchhhHHHhhhcHhHHHhhc
Q 043655 29 LPDAILHHILFLLPIKSIAQTCTLSKRWRSLWC 61 (512)
Q Consensus 29 LPdevl~~Ils~L~~~d~~rts~lSrrWr~lw~ 61 (512)
||+|++.+||++|+.+|..+++.|||+|+.+..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999998653
No 18
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=3.2e-07 Score=88.58 Aligned_cols=175 Identities=18% Similarity=0.132 Sum_probs=108.0
Q ss_pred cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCcc-ccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGF-RLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS 216 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 216 (512)
..++++.++.+.......-...-.|++++.|+|+++ -+ ...+..-.+..+|+|+.|.|+.+.+....+-.. ...
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N--L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~---~~~ 195 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN--LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT---TLL 195 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhh--hHHhHHHHHHHHHhcccchhcccccccccCCccccc---hhh
Confidence 456666666544322222123446999999999984 22 111111135579999999999998875321110 125
Q ss_pred Ccccceecccccc----ccchhcccccccceeeeccccCccceeEec---cCcceEEEeeeccccCCCceEEEeCCCcce
Q 043655 217 FPHLKKLDLDACY----GLKQLKVGCRALEDLTLDNCIQLCGLDIFG---TKLERLRVASCFDAYCDKSWVKIDASKLKV 289 (512)
Q Consensus 217 ~p~L~~L~L~~~~----~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~---~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~ 289 (512)
+++|+.|.|.+|. .+..+...||+|+.|.+....++....... ..|+.|.|.+............-..|+|+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 8999999999996 577788899999999999986433222222 578888888764433222223335677777
Q ss_pred EEeeccccCCC--------ccccCcccceeeEEeeE
Q 043655 290 LNWEYNAITAS--------SSLENLASLHEASVGFI 317 (512)
Q Consensus 290 L~~~~~~~~~~--------~~l~~~~~L~~l~l~~~ 317 (512)
|.++.+.+++. .....+|+|+.|.++..
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN 311 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccC
Confidence 77666544322 11235566776666543
No 19
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.03 E-value=1.2e-06 Score=87.58 Aligned_cols=316 Identities=18% Similarity=0.163 Sum_probs=153.4
Q ss_pred eeeeEEeeccCcchhhHHHHHHHhcCCceeEEEeccCCCCCCCcceec-cCCccEEEEecccCccccCCCccccccCccc
Q 043655 114 IRVLRFRAHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVIT-SDSLRVFKLRSRYRGFRLPPSSVVAGGFRSL 192 (512)
Q Consensus 114 i~~l~l~~~~~~~~~~~wi~~~~~~~v~~L~l~~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L 192 (512)
++.+.++...-...-..-+++. .-++.|++.-.. ...+|..-|. -.++++|+|.+| .++.-.. ..+.++.+|
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l--~alrslDLSrN~--is~i~~~sfp~~~ni~~L~La~N--~It~l~~-~~F~~lnsL 199 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSAL--PALRSLDLSRNL--ISEIPKPSFPAKVNIKKLNLASN--RITTLET-GHFDSLNSL 199 (873)
T ss_pred eeEEeeeccccccccHHHHHhH--hhhhhhhhhhch--hhcccCCCCCCCCCceEEeeccc--ccccccc-ccccccchh
Confidence 7777776632111111111221 335566665322 2233333343 478999999985 2322211 124568899
Q ss_pred ceEEeeeEEeeCccchhhhhcCCCCcccceecccccc-c-cch-hcccccccceeeeccccC--cc-ceeEeccCcceEE
Q 043655 193 HTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY-G-LKQ-LKVGCRALEDLTLDNCIQ--LC-GLDIFGTKLERLR 266 (512)
Q Consensus 193 ~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~-~-l~~-l~~~cp~Le~L~l~~c~~--l~-~~~v~~~~L~~L~ 266 (512)
.+|.|+.+++..-.. ..| ..+|+|+.|+|.... . .+. -+.+.|+|+.|.+....- ++ ..--...++++|.
T Consensus 200 ~tlkLsrNrittLp~--r~F--k~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~ 275 (873)
T KOG4194|consen 200 LTLKLSRNRITTLPQ--RSF--KRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN 275 (873)
T ss_pred eeeecccCcccccCH--HHh--hhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceee
Confidence 999999999876332 112 468999999998765 1 211 235778999998888642 11 1112224555555
Q ss_pred EeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccccCcccceeeEEeeEEcccch--hH-------------HHHh
Q 043655 267 VASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLENLASLHEASVGFILLHEDL--TS-------------AKLQ 329 (512)
Q Consensus 267 l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~--~~-------------~~~~ 329 (512)
+......... ...-.....|+.|+++.+.+... -.-+.+++|+++++++.....-. .+ ...+
T Consensus 276 L~~N~l~~vn-~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 276 LETNRLQAVN-EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID 354 (873)
T ss_pred cccchhhhhh-cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH
Confidence 5442211000 00111223344444433322111 01123444555544443321100 00 0011
Q ss_pred HHH-HHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHH-HHHHhhCCCCcEEEEEeeccc
Q 043655 330 SVS-NFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGL-ACLFRSSPSIHTLILKIINDY 407 (512)
Q Consensus 330 ~~~-~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l-~~~L~~cp~Le~L~l~~~~~~ 407 (512)
.+. ..+.++++|+.|++..+.+....+. .......++.|+.|.+... ....+ ..-+...++||.|++...--.
T Consensus 355 ~l~e~af~~lssL~~LdLr~N~ls~~IED-aa~~f~gl~~LrkL~l~gN----qlk~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 355 HLAEGAFVGLSSLHKLDLRSNELSWCIED-AAVAFNGLPSLRKLRLTGN----QLKSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred HHHhhHHHHhhhhhhhcCcCCeEEEEEec-chhhhccchhhhheeecCc----eeeecchhhhccCcccceecCCCCcce
Confidence 111 2355666667777666554332221 1123334666677766542 12222 234556677777766531100
Q ss_pred chhhhcccccccCccCccchhhhhccccCchhhhcCccEEEEee--eccchhHHHHHHHHHhcCcc
Q 043655 408 KIQRRQWNRDLWDMYTSEEEQYWQSQSQTLKPFLNNLNVVEIHG--FLECENEVSLAKFLLKHGKA 471 (512)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~L~~v~i~~--~~g~~~e~~l~~~ll~~a~~ 471 (512)
.+ .. + .++ .-+||++.|.. |-.+..-..|...+.++-..
T Consensus 430 --------------SI--q~----n---AFe--~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq 470 (873)
T KOG4194|consen 430 --------------SI--QP----N---AFE--PMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQ 470 (873)
T ss_pred --------------ee--cc----c---ccc--cchhhhhhhcccceEEeccHHHHHHHHHhcccc
Confidence 00 00 0 012 23899888854 66677777888888775443
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.67 E-value=0.00018 Score=77.52 Aligned_cols=136 Identities=21% Similarity=0.191 Sum_probs=65.3
Q ss_pred cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF 217 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 217 (512)
.+-..|++. ......+|..+. ++|+.|.|.+|.. -.+|. ..++|++|+|+++.+..-.. ..
T Consensus 201 ~~~~~LdLs--~~~LtsLP~~l~--~~L~~L~L~~N~L-t~LP~------lp~~Lk~LdLs~N~LtsLP~--------lp 261 (788)
T PRK15387 201 NGNAVLNVG--ESGLTTLPDCLP--AHITTLVIPDNNL-TSLPA------LPPELRTLEVSGNQLTSLPV--------LP 261 (788)
T ss_pred CCCcEEEcC--CCCCCcCCcchh--cCCCEEEccCCcC-CCCCC------CCCCCcEEEecCCccCcccC--------cc
Confidence 344444443 233445676553 3677777776421 12332 25677888887776654221 23
Q ss_pred cccceecccccc--c-----------------cchhcccccccceeeeccccCccceeEeccCcceEEEeeeccccCCCc
Q 043655 218 PHLKKLDLDACY--G-----------------LKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKS 278 (512)
Q Consensus 218 p~L~~L~L~~~~--~-----------------l~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~ 278 (512)
++|++|+|.++. . +..+-...++|+.|++.++. +..+....++|+.|.+.+|....
T Consensus 262 ~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~-L~~Lp~lp~~L~~L~Ls~N~L~~---- 336 (788)
T PRK15387 262 PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTS---- 336 (788)
T ss_pred cccceeeccCCchhhhhhchhhcCEEECcCCccccccccccccceeECCCCc-cccCCCCcccccccccccCcccc----
Confidence 455666555542 1 11221223556666666653 22222112345555555543211
Q ss_pred eEEEeCCCcceEEeeccccC
Q 043655 279 WVKIDASKLKVLNWEYNAIT 298 (512)
Q Consensus 279 ~~~i~~p~L~~L~~~~~~~~ 298 (512)
+.--.++|++|+++++.+.
T Consensus 337 -LP~lp~~Lq~LdLS~N~Ls 355 (788)
T PRK15387 337 -LPTLPSGLQELSVSDNQLA 355 (788)
T ss_pred -ccccccccceEecCCCccC
Confidence 1101136777777766543
No 21
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=2.3e-06 Score=82.86 Aligned_cols=207 Identities=20% Similarity=0.220 Sum_probs=97.4
Q ss_pred cCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccccchhccccccc
Q 043655 162 SDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRAL 241 (512)
Q Consensus 162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l~~l~~~cp~L 241 (512)
.++|+...|.++ ....+...-+...||+++.|+|+.+-+.+-..+. .+....|+|
T Consensus 120 ~kkL~~IsLdn~--~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~-----------------------~i~eqLp~L 174 (505)
T KOG3207|consen 120 LKKLREISLDNY--RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVL-----------------------KIAEQLPSL 174 (505)
T ss_pred HHhhhheeecCc--cccccchhhhhhhCCcceeecchhhhHHhHHHHH-----------------------HHHHhcccc
Confidence 456666666662 2333322223455677777777666665533333 333344445
Q ss_pred ceeeeccccCc----cceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeecccc-C-CCccccCcccceeeEEe
Q 043655 242 EDLTLDNCIQL----CGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAI-T-ASSSLENLASLHEASVG 315 (512)
Q Consensus 242 e~L~l~~c~~l----~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~-~-~~~~l~~~~~L~~l~l~ 315 (512)
|.|+|+..... .......+.|+.|.+..|-....+...+....|+|+.|.+.++.. . .......+..|++|+++
T Consensus 175 e~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 175 ENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS 254 (505)
T ss_pred hhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence 55544443211 011112355666666666443333344445566666666665521 0 11122334556666665
Q ss_pred eEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccc--cccccccccccceEEEEeeccCCcHHHHHHHHhhC
Q 043655 316 FILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRN--YFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSS 393 (512)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~c 393 (512)
.....+-. .......+++|+.|.++.+++..+..++ .......|++|++|.+.... ..++..+ .-++..
T Consensus 255 ~N~li~~~-------~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl-~~l~~l 325 (505)
T KOG3207|consen 255 NNNLIDFD-------QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSL-NHLRTL 325 (505)
T ss_pred CCcccccc-------cccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc-ccccccc-chhhcc
Confidence 43322211 1123445666666666666555444332 11234467777777775431 1122222 223445
Q ss_pred CCCcEEEEE
Q 043655 394 PSIHTLILK 402 (512)
Q Consensus 394 p~Le~L~l~ 402 (512)
++|+.|.+.
T Consensus 326 ~nlk~l~~~ 334 (505)
T KOG3207|consen 326 ENLKHLRIT 334 (505)
T ss_pred chhhhhhcc
Confidence 555555543
No 22
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.62 E-value=5.2e-06 Score=86.49 Aligned_cols=41 Identities=22% Similarity=0.368 Sum_probs=34.6
Q ss_pred CCccCCCChHHHHHHHccCCchhhHHHhhhcHhHHHhhccC
Q 043655 23 IDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCSF 63 (512)
Q Consensus 23 ~D~is~LPdevl~~Ils~L~~~d~~rts~lSrrWr~lw~~~ 63 (512)
.+.....|+.....+...++..+...+..++++|.......
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (482)
T KOG1947|consen 42 LRFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGSL 82 (482)
T ss_pred eeeeeccccchhhhcccccccccccccchhhhhhhhhhhhh
Confidence 35567899999999999999999999999999998765443
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.53 E-value=2.4e-05 Score=73.91 Aligned_cols=210 Identities=19% Similarity=0.123 Sum_probs=120.1
Q ss_pred cCcccceEEeeeEEeeC--ccchhhhhcCCCCcccceecccccc-------ccc---------hhcccccccceeeeccc
Q 043655 188 GFRSLHTLSLSLVILFN--QPCLLDLFTDSSFPHLKKLDLDACY-------GLK---------QLKVGCRALEDLTLDNC 249 (512)
Q Consensus 188 ~~~~L~~L~L~~~~~~~--~~~l~~l~~~~~~p~L~~L~L~~~~-------~l~---------~l~~~cp~Le~L~l~~c 249 (512)
++|+|++|+|+.+.|.. ...+.++++ +|..|++|.|.+|. .+. .....-|.|+.+...+.
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~--s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLS--SCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHH--hccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 46677777777777654 345777775 58888888888885 111 11223477888877776
Q ss_pred cCccce-------eEeccCcceEEEeeeccccCCCc---eEEEeCCCcceEEeeccccCCC------ccccCcccceeeE
Q 043655 250 IQLCGL-------DIFGTKLERLRVASCFDAYCDKS---WVKIDASKLKVLNWEYNAITAS------SSLENLASLHEAS 313 (512)
Q Consensus 250 ~~l~~~-------~v~~~~L~~L~l~~c~~~~~~~~---~~~i~~p~L~~L~~~~~~~~~~------~~l~~~~~L~~l~ 313 (512)
..-..- .-..|+|+.+.+........+.. .-...+|+|+.|++.++.++.. ..+...|.|++++
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 521110 01126777776655432221110 0123688899999888765432 2344667888888
Q ss_pred EeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhC
Q 043655 314 VGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSS 393 (512)
Q Consensus 314 l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~c 393 (512)
++.|...+... ...+..+-.+.|+|+.|.+.++.+..-........+...+.|+.|.|+.+.......++..+....
T Consensus 248 l~dcll~~~Ga---~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~ 324 (382)
T KOG1909|consen 248 LGDCLLENEGA---IAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKF 324 (382)
T ss_pred ccccccccccH---HHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHHHhc
Confidence 88887644332 122334455578888888887764332211111122236788888887654433445666777666
Q ss_pred CCCcEEEEE
Q 043655 394 PSIHTLILK 402 (512)
Q Consensus 394 p~Le~L~l~ 402 (512)
+-...+...
T Consensus 325 ~~~~~~~~~ 333 (382)
T KOG1909|consen 325 DTAHVLLED 333 (382)
T ss_pred ccccccchh
Confidence 555444433
No 24
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.51 E-value=9.4e-06 Score=84.55 Aligned_cols=64 Identities=33% Similarity=0.488 Sum_probs=33.3
Q ss_pred ccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc-----ccchhcccccccceeeeccccCc
Q 043655 187 GGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY-----GLKQLKVGCRALEDLTLDNCIQL 252 (512)
Q Consensus 187 ~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~-----~l~~l~~~cp~Le~L~l~~c~~l 252 (512)
..+++|+.|+|.++...++.++..+.. .||+|++|.+.+|. ++..+...||.|++|+|..|..+
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~--~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALAS--RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHh--hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 345556666665555444434444332 35566666555554 34455555566666666655543
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.43 E-value=0.00018 Score=77.76 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=32.7
Q ss_pred CcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEee
Q 043655 339 SHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKII 404 (512)
Q Consensus 339 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~ 404 (512)
++|+.|+|+.+.+..+.. . ...+|+.|++..+....-...+..++..+|++..|.+...
T Consensus 367 ~~L~~LdLs~N~Lt~LP~-----~--l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 367 PTITTLDVSRNALTNLPE-----N--LPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred CCcCEEECCCCcCCCCCH-----h--HHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCC
Confidence 356667766654432211 1 1125677776653222112356677777888888888653
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.32 E-value=3.5e-05 Score=67.65 Aligned_cols=55 Identities=29% Similarity=0.356 Sum_probs=14.2
Q ss_pred CcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccc-hhcccccccceeeeccc
Q 043655 189 FRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLK-QLKVGCRALEDLTLDNC 249 (512)
Q Consensus 189 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~-~l~~~cp~Le~L~l~~c 249 (512)
+.+|+.|+|+++.+..-+++ ..+++|++|++.+.. .+. .+...||+|++|.+.+.
T Consensus 41 l~~L~~L~Ls~N~I~~l~~l------~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLEGL------PGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp -TT--EEE-TTS--S--TT----------TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS
T ss_pred hcCCCEEECCCCCCccccCc------cChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC
Confidence 44445555554444432222 234445555554443 221 12223555555555544
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.30 E-value=0.00015 Score=63.67 Aligned_cols=107 Identities=21% Similarity=0.192 Sum_probs=48.3
Q ss_pred CCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHH-HHhhcCCcccEeeecchhhhhhccccccccc
Q 043655 285 SKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVS-NFLSGLSHARSLTLESPCIEILSNRNYFTNL 363 (512)
Q Consensus 285 p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~-~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~ 363 (512)
.+|+.|+++++.+.....+..++.|+.+.++.....+ +. .+...+++|+.|.++.+.+..+.+- ..+
T Consensus 42 ~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~---------i~~~l~~~lp~L~~L~L~~N~I~~l~~l---~~L 109 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISS---------ISEGLDKNLPNLQELYLSNNKISDLNEL---EPL 109 (175)
T ss_dssp TT--EEE-TTS--S--TT----TT--EEE--SS---S----------CHHHHHH-TT--EEE-TTS---SCCCC---GGG
T ss_pred cCCCEEECCCCCCccccCccChhhhhhcccCCCCCCc---------cccchHHhCCcCCEEECcCCcCCChHHh---HHH
Confidence 4666677776666555556677788888776543221 21 2335689999999998886555432 355
Q ss_pred ccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655 364 HTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI 403 (512)
Q Consensus 364 ~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~ 403 (512)
..+++|+.|+|...+......-=..++..+|+|+.|+-.-
T Consensus 110 ~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 110 SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 5789999999976543222233467889999999997654
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.19 E-value=0.0008 Score=72.65 Aligned_cols=155 Identities=17% Similarity=0.128 Sum_probs=92.6
Q ss_pred CCccEEEEecccCcc-ccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccccchhccccccc
Q 043655 163 DSLRVFKLRSRYRGF-RLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRAL 241 (512)
Q Consensus 163 ~~L~~L~L~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l~~l~~~cp~L 241 (512)
..-..|+|+.+ .+ .+|+. . .++|+.|.|.++.+..-. ...|+|++|+|.++. +..+-...++|
T Consensus 201 ~~~~~LdLs~~--~LtsLP~~-l----~~~L~~L~L~~N~Lt~LP--------~lp~~Lk~LdLs~N~-LtsLP~lp~sL 264 (788)
T PRK15387 201 NGNAVLNVGES--GLTTLPDC-L----PAHITTLVIPDNNLTSLP--------ALPPELRTLEVSGNQ-LTSLPVLPPGL 264 (788)
T ss_pred CCCcEEEcCCC--CCCcCCcc-h----hcCCCEEEccCCcCCCCC--------CCCCCCcEEEecCCc-cCcccCccccc
Confidence 34567888874 33 34432 1 358999999988776522 236899999998873 44443345789
Q ss_pred ceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCCccccCcccceeeEEeeEEccc
Q 043655 242 EDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHE 321 (512)
Q Consensus 242 e~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~ 321 (512)
+.|++.++. +..+...-++|+.|.+.++... .+....|+|+.|+++++.+..... ..+.|..++++.+....
T Consensus 265 ~~L~Ls~N~-L~~Lp~lp~~L~~L~Ls~N~Lt-----~LP~~p~~L~~LdLS~N~L~~Lp~--lp~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 265 LELSIFSNP-LTHLPALPSGLCKLWIFGNQLT-----SLPVLPPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQLTS 336 (788)
T ss_pred ceeeccCCc-hhhhhhchhhcCEEECcCCccc-----cccccccccceeECCCCccccCCC--CcccccccccccCcccc
Confidence 999998875 3333323367888888776432 222235789999998876543211 12356666555432110
Q ss_pred chhHHHHhHHHHHhhcCCcccEeeecchhhhh
Q 043655 322 DLTSAKLQSVSNFLSGLSHARSLTLESPCIEI 353 (512)
Q Consensus 322 ~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~ 353 (512)
+..-..+|+.|+++.+.+..
T Consensus 337 ------------LP~lp~~Lq~LdLS~N~Ls~ 356 (788)
T PRK15387 337 ------------LPTLPSGLQELSVSDNQLAS 356 (788)
T ss_pred ------------ccccccccceEecCCCccCC
Confidence 01111367888887766543
No 29
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.96 E-value=0.00023 Score=76.26 Aligned_cols=155 Identities=17% Similarity=0.143 Sum_probs=98.3
Q ss_pred cccceeeeccccCcc-----ceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCCccccCcccceeeE
Q 043655 239 RALEDLTLDNCIQLC-----GLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEAS 313 (512)
Q Consensus 239 p~Le~L~l~~c~~l~-----~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~ 313 (512)
.+|+.|+|.+-..+. .+.-.-|+|++|.+.+-....+....+..+-|||.+|+++|..+.....++.+++|+.+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 678888888754332 222223899999998854332222334456799999999999887776777888888776
Q ss_pred EeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhc--ccccccccccccccceEEEEeeccCCcHHHHHHHHh
Q 043655 314 VGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILS--NRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFR 391 (512)
Q Consensus 314 l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~ 391 (512)
+-.-..... ..+.. +-.+.+|+.|+|+........ .....+-.-.+|+||.|+.+.. ..+...+..+++
T Consensus 202 mrnLe~e~~------~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT--di~~~~le~ll~ 272 (699)
T KOG3665|consen 202 MRNLEFESY------QDLID-LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT--DINEEILEELLN 272 (699)
T ss_pred ccCCCCCch------hhHHH-HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc--chhHHHHHHHHH
Confidence 654332221 12222 445889999999864321111 0001112224789999988742 344567889999
Q ss_pred hCCCCcEEEEE
Q 043655 392 SSPSIHTLILK 402 (512)
Q Consensus 392 ~cp~Le~L~l~ 402 (512)
.=|+|+.+.+-
T Consensus 273 sH~~L~~i~~~ 283 (699)
T KOG3665|consen 273 SHPNLQQIAAL 283 (699)
T ss_pred hCccHhhhhhh
Confidence 99999988754
No 30
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.74 E-value=3.9e-05 Score=77.69 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=25.4
Q ss_pred CCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeC
Q 043655 153 FNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFN 204 (512)
Q Consensus 153 ~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 204 (512)
..+|..+|....|+.|+|++| .++-.|... ..-+++-.|+|+++.+..
T Consensus 93 sGiP~diF~l~dLt~lDLShN--qL~EvP~~L--E~AKn~iVLNLS~N~Iet 140 (1255)
T KOG0444|consen 93 SGIPTDIFRLKDLTILDLSHN--QLREVPTNL--EYAKNSIVLNLSYNNIET 140 (1255)
T ss_pred CCCCchhcccccceeeecchh--hhhhcchhh--hhhcCcEEEEcccCcccc
Confidence 456667777777777777763 222222211 123455566666655543
No 31
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.71 E-value=0.0001 Score=78.04 Aligned_cols=62 Identities=18% Similarity=0.165 Sum_probs=31.0
Q ss_pred hhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655 335 LSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI 403 (512)
Q Consensus 335 l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~ 403 (512)
+..++.++.++++.+.++...... ..|. ++|++|++...... ..=..-|+.|.++..+++..
T Consensus 448 ~~~l~qL~~lDlS~N~L~~~~l~~---~~p~-p~LkyLdlSGN~~l---~~d~~~l~~l~~l~~~~i~~ 509 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSCNNLSEVTLPE---ALPS-PNLKYLDLSGNTRL---VFDHKTLKVLKSLSQMDITL 509 (1081)
T ss_pred hhhcCcceEEecccchhhhhhhhh---hCCC-cccceeeccCCccc---ccchhhhHHhhhhhheeccc
Confidence 445566777777766655544321 2222 67777777654211 11123344455555555544
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.67 E-value=0.00039 Score=66.93 Aligned_cols=99 Identities=24% Similarity=0.250 Sum_probs=67.6
Q ss_pred eCCCcceEEeeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccc
Q 043655 283 DASKLKVLNWEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYF 360 (512)
Q Consensus 283 ~~p~L~~L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~ 360 (512)
..|+|+.|+++++.++.. ..++++..+++++++-.... ..-..+++++++|++|.+.++.+..+..
T Consensus 272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~--------~v~~~~f~~ls~L~tL~L~~N~it~~~~---- 339 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE--------FVSSGMFQGLSGLKTLSLYDNQITTVAP---- 339 (498)
T ss_pred hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH--------HHHHHhhhccccceeeeecCCeeEEEec----
Confidence 457888888888766433 45677788888887644221 1124578999999999999887655543
Q ss_pred cccccccccceEEEEeecc--CCcHHHHHHHHhhC
Q 043655 361 TNLHTFTNLKSLELHTGFN--KHNVQGLACLFRSS 393 (512)
Q Consensus 361 ~~~~~~~~L~~L~L~~~~~--~~~~~~l~~~L~~c 393 (512)
..+.....|..|.|-.... ++-..|+..++++-
T Consensus 340 ~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~ 374 (498)
T KOG4237|consen 340 GAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKK 374 (498)
T ss_pred ccccccceeeeeehccCcccCccchHHHHHHHhhC
Confidence 2444666788888765332 45578888888864
No 33
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.65 E-value=0.0036 Score=67.93 Aligned_cols=198 Identities=19% Similarity=0.182 Sum_probs=102.9
Q ss_pred cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF 217 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 217 (512)
.+...|.+. ......+|..+ .+.|+.|+|++|... .+|.. .+++|++|+|+++.+..-. . .-.
T Consensus 178 ~~~~~L~L~--~~~LtsLP~~I--p~~L~~L~Ls~N~Lt-sLP~~-----l~~nL~~L~Ls~N~LtsLP---~----~l~ 240 (754)
T PRK15370 178 NNKTELRLK--ILGLTTIPACI--PEQITTLILDNNELK-SLPEN-----LQGNIKTLYANSNQLTSIP---A----TLP 240 (754)
T ss_pred cCceEEEeC--CCCcCcCCccc--ccCCcEEEecCCCCC-cCChh-----hccCCCEEECCCCccccCC---h----hhh
Confidence 344444443 23344566554 357889999885322 34321 2468999999888775421 1 123
Q ss_pred cccceeccccccccchhcc-cccccceeeeccccCccceeE-eccCcceEEEeeeccccCCCceEEEeCCCcceEEeecc
Q 043655 218 PHLKKLDLDACYGLKQLKV-GCRALEDLTLDNCIQLCGLDI-FGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYN 295 (512)
Q Consensus 218 p~L~~L~L~~~~~l~~l~~-~cp~Le~L~l~~c~~l~~~~v-~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~ 295 (512)
++|+.|+|.++. +..+-. -...|+.|++.++. +..+.- ..++|+.|.+.+|..... ... -.++|+.|.+.++
T Consensus 241 ~~L~~L~Ls~N~-L~~LP~~l~s~L~~L~Ls~N~-L~~LP~~l~~sL~~L~Ls~N~Lt~L-P~~---lp~sL~~L~Ls~N 314 (754)
T PRK15370 241 DTIQEMELSINR-ITELPERLPSALQSLDLFHNK-ISCLPENLPEELRYLSVYDNSIRTL-PAH---LPSGITHLNVQSN 314 (754)
T ss_pred ccccEEECcCCc-cCcCChhHhCCCCEEECcCCc-cCccccccCCCCcEEECCCCccccC-ccc---chhhHHHHHhcCC
Confidence 578888888775 222211 12468888887653 333321 124788888877633211 000 1235777777665
Q ss_pred ccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEE
Q 043655 296 AITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELH 375 (512)
Q Consensus 296 ~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 375 (512)
.+.... ....++|+.++++.+.... +...+ .++|+.|+++.+.+..+.. .. .++|++|+|.
T Consensus 315 ~Lt~LP-~~l~~sL~~L~Ls~N~Lt~---------LP~~l--~~sL~~L~Ls~N~L~~LP~-----~l--p~~L~~LdLs 375 (754)
T PRK15370 315 SLTALP-ETLPPGLKTLEAGENALTS---------LPASL--PPELQVLDVSKNQITVLPE-----TL--PPTITTLDVS 375 (754)
T ss_pred ccccCC-ccccccceeccccCCcccc---------CChhh--cCcccEEECCCCCCCcCCh-----hh--cCCcCEEECC
Confidence 543211 1123566666665443211 00001 2467777777665432211 11 2467777776
Q ss_pred ee
Q 043655 376 TG 377 (512)
Q Consensus 376 ~~ 377 (512)
.+
T Consensus 376 ~N 377 (754)
T PRK15370 376 RN 377 (754)
T ss_pred CC
Confidence 53
No 34
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.65 E-value=8.1e-05 Score=75.45 Aligned_cols=87 Identities=20% Similarity=0.239 Sum_probs=51.4
Q ss_pred CCCCcceeccCCccEEEEecccCcc-ccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--
Q 043655 153 FNLPRCVITSDSLRVFKLRSRYRGF-RLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY-- 229 (512)
Q Consensus 153 ~~lp~~l~~~~~L~~L~L~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~-- 229 (512)
..+|..+-.+++++.|+|.. ..+ .+|. ...++.+|++|++.++.+..- .+++ +.+|.|+.+.+....
T Consensus 22 ~~FP~~v~qMt~~~WLkLnr--t~L~~vPe---EL~~lqkLEHLs~~HN~L~~v--hGEL---s~Lp~LRsv~~R~N~LK 91 (1255)
T KOG0444|consen 22 DRFPHDVEQMTQMTWLKLNR--TKLEQVPE---ELSRLQKLEHLSMAHNQLISV--HGEL---SDLPRLRSVIVRDNNLK 91 (1255)
T ss_pred CcCchhHHHhhheeEEEech--hhhhhChH---HHHHHhhhhhhhhhhhhhHhh--hhhh---ccchhhHHHhhhccccc
Confidence 46777777788888888876 222 2332 234677888888887776652 1222 356777777776543
Q ss_pred --ccchhcccccccceeeeccc
Q 043655 230 --GLKQLKVGCRALEDLTLDNC 249 (512)
Q Consensus 230 --~l~~l~~~cp~Le~L~l~~c 249 (512)
++..=+.+...|..|+|+..
T Consensus 92 nsGiP~diF~l~dLt~lDLShN 113 (1255)
T KOG0444|consen 92 NSGIPTDIFRLKDLTILDLSHN 113 (1255)
T ss_pred cCCCCchhcccccceeeecchh
Confidence 33333334455555555554
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.63 E-value=0.00084 Score=62.35 Aligned_cols=103 Identities=25% Similarity=0.263 Sum_probs=64.3
Q ss_pred CCCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccccc
Q 043655 284 ASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNL 363 (512)
Q Consensus 284 ~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~ 363 (512)
.|.++.|.++.+.+.....+..+++|++++++... ...+..+-..+.|+++|.+..+.++.++ .+
T Consensus 306 ~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~---------Ls~~~Gwh~KLGNIKtL~La~N~iE~LS------GL 370 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNL---------LAECVGWHLKLGNIKTLKLAQNKIETLS------GL 370 (490)
T ss_pred ccceeEEeccccceeeehhhhhcccceEeecccch---------hHhhhhhHhhhcCEeeeehhhhhHhhhh------hh
Confidence 57777777776655444446677788888777543 2233444556777888888877766654 33
Q ss_pred ccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655 364 HTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI 403 (512)
Q Consensus 364 ~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~ 403 (512)
..+-.|..|++..+ ...-..-..-+.+.|+||.|.+..
T Consensus 371 ~KLYSLvnLDl~~N--~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 371 RKLYSLVNLDLSSN--QIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred Hhhhhheecccccc--chhhHHHhcccccccHHHHHhhcC
Confidence 45667778877653 111112234567888888888765
No 36
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.0018 Score=60.19 Aligned_cols=183 Identities=13% Similarity=0.070 Sum_probs=97.2
Q ss_pred cCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccccchhcccccccceeeeccccC---ccceeEeccCcce
Q 043655 188 GFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRALEDLTLDNCIQ---LCGLDIFGTKLER 264 (512)
Q Consensus 188 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l~~l~~~cp~Le~L~l~~c~~---l~~~~v~~~~L~~ 264 (512)
.+.+++.|+|.++.+.+-..+ ..++.+.|.|+.|+|..... +..+.....+|+.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI-----------------------~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEI-----------------------GAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred HhhhhhhhhcccchhccHHHH-----------------------HHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 455666666666665553333 34455566666666665543 2223333456777
Q ss_pred EEEeeeccccCCCceEEEeCCCcceEEeeccccCC----CccccCc-ccceeeEEeeEEcccchhHHHHhHHHHHhhcCC
Q 043655 265 LRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITA----SSSLENL-ASLHEASVGFILLHEDLTSAKLQSVSNFLSGLS 339 (512)
Q Consensus 265 L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~----~~~l~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~ 339 (512)
|.+.+..-.+....+..-+.|.++.|+++.+.... ...++.. +.+..+.+.-| ......+..++.+-+|
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c------~~~~w~~~~~l~r~Fp 199 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPC------LEQLWLNKNKLSRIFP 199 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCc------HHHHHHHHHhHHhhcc
Confidence 77766543322233333455666666655542110 0111111 12222222211 1223455677788899
Q ss_pred cccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEee
Q 043655 340 HARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKII 404 (512)
Q Consensus 340 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~ 404 (512)
++..+.++.+.++....+. ...+++.+--|.|+.. +-.+++++ .-|..+|.|..|.+..+
T Consensus 200 nv~sv~v~e~PlK~~s~ek---~se~~p~~~~LnL~~~-~idswasv-D~Ln~f~~l~dlRv~~~ 259 (418)
T KOG2982|consen 200 NVNSVFVCEGPLKTESSEK---GSEPFPSLSCLNLGAN-NIDSWASV-DALNGFPQLVDLRVSEN 259 (418)
T ss_pred cchheeeecCcccchhhcc---cCCCCCcchhhhhccc-ccccHHHH-HHHcCCchhheeeccCC
Confidence 9999999988766655443 3334555556777653 22344443 44678999999988643
No 37
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.46 E-value=0.0005 Score=73.03 Aligned_cols=225 Identities=20% Similarity=0.208 Sum_probs=112.4
Q ss_pred CCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCcc-chhhhhcCCCC
Q 043655 139 NVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQP-CLLDLFTDSSF 217 (512)
Q Consensus 139 ~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~l~~l~~~~~~ 217 (512)
+++-..+++.......+|..+-....|+.|+++.++. ...|. ......+|+.|.|.++.+...+ ++ +..
T Consensus 44 ~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i-~~vp~---s~~~~~~l~~lnL~~n~l~~lP~~~------~~l 113 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYI-RSVPS---SCSNMRNLQYLNLKNNRLQSLPASI------SEL 113 (1081)
T ss_pred eeeeEEeeccccccccCCchhhhHHHHhhcccchhhH-hhCch---hhhhhhcchhheeccchhhcCchhH------Hhh
Confidence 4443344444444556777777778888888887532 12332 2236778888888887766432 22 356
Q ss_pred cccceecccccc--ccchhcccccccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcce-EEeec
Q 043655 218 PHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKV-LNWEY 294 (512)
Q Consensus 218 p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~-L~~~~ 294 (512)
.+|+.|++++.. .+...+..|..++.+...+...+..+.... ++.+.+..... ...+.++-.+|+. |++..
T Consensus 114 knl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~--ik~~~l~~n~l----~~~~~~~i~~l~~~ldLr~ 187 (1081)
T KOG0618|consen 114 KNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS--IKKLDLRLNVL----GGSFLIDIYNLTHQLDLRY 187 (1081)
T ss_pred hcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcccc--chhhhhhhhhc----ccchhcchhhhheeeeccc
Confidence 788888887765 344555667777777777663333332222 33333333211 1223333444444 45444
Q ss_pred cccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEE
Q 043655 295 NAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLEL 374 (512)
Q Consensus 295 ~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L 374 (512)
+... ...+.+++.|+.+....... ..+--..++++.|+...+.+... ...|.-.||+.++|
T Consensus 188 N~~~-~~dls~~~~l~~l~c~rn~l------------s~l~~~g~~l~~L~a~~n~l~~~------~~~p~p~nl~~~di 248 (1081)
T KOG0618|consen 188 NEME-VLDLSNLANLEVLHCERNQL------------SELEISGPSLTALYADHNPLTTL------DVHPVPLNLQYLDI 248 (1081)
T ss_pred chhh-hhhhhhccchhhhhhhhccc------------ceEEecCcchheeeeccCcceee------ccccccccceeeec
Confidence 4332 22233333333322211100 00011123344444443332211 13334456777776
Q ss_pred EeeccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655 375 HTGFNKHNVQGLACLFRSSPSIHTLILK 402 (512)
Q Consensus 375 ~~~~~~~~~~~l~~~L~~cp~Le~L~l~ 402 (512)
+.. ....++.++..|++|+.|.+.
T Consensus 249 s~n----~l~~lp~wi~~~~nle~l~~n 272 (1081)
T KOG0618|consen 249 SHN----NLSNLPEWIGACANLEALNAN 272 (1081)
T ss_pred chh----hhhcchHHHHhcccceEeccc
Confidence 542 233555666777777777664
No 38
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.34 E-value=0.0003 Score=75.36 Aligned_cols=106 Identities=22% Similarity=0.171 Sum_probs=55.1
Q ss_pred cCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhcccccccceeeeccccCccceeEe----ccC
Q 043655 188 GFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLDIF----GTK 261 (512)
Q Consensus 188 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~v~----~~~ 261 (512)
-||+|++|.+++..+.+++ +..+. .++|+|..|+++++. .+ .-++..++||.|.+.+-+-....++. -.+
T Consensus 146 ~LPsL~sL~i~~~~~~~~d-F~~lc--~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~ 221 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDD-FSQLC--ASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKK 221 (699)
T ss_pred hCcccceEEecCceecchh-HHHHh--hccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccC
Confidence 4677777777766665543 44444 367777777776654 33 22345566666666654322111111 155
Q ss_pred cceEEEeeeccccCC-----CceEEEeCCCcceEEeecccc
Q 043655 262 LERLRVASCFDAYCD-----KSWVKIDASKLKVLNWEYNAI 297 (512)
Q Consensus 262 L~~L~l~~c~~~~~~-----~~~~~i~~p~L~~L~~~~~~~ 297 (512)
|+.|.|+.-...... -.......|+|+.|+.+|..+
T Consensus 222 L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 222 LRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred CCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 666666553222111 011123467777777777654
No 39
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.98 E-value=0.003 Score=58.00 Aligned_cols=117 Identities=18% Similarity=0.150 Sum_probs=66.3
Q ss_pred EeCCCcceEEeeccccCCC------ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhc
Q 043655 282 IDASKLKVLNWEYNAITAS------SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILS 355 (512)
Q Consensus 282 i~~p~L~~L~~~~~~~~~~------~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~ 355 (512)
.+.|.|+++....+.+... ..+..-..|+.+.+....+..... ..-+..-+.-+.+|+.|+|..+++....
T Consensus 154 a~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv---~~L~~~gl~y~~~LevLDlqDNtft~~g 230 (388)
T COG5238 154 ADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGV---TMLAFLGLFYSHSLEVLDLQDNTFTLEG 230 (388)
T ss_pred ccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchh---HHHHHHHHHHhCcceeeeccccchhhhh
Confidence 4678898888766554221 111112466666666554332211 0112223556788999999988754433
Q ss_pred ccccccccccccccceEEEEeeccCCcHHHHHHHHhhC-----CCCcEEEEEe
Q 043655 356 NRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSS-----PSIHTLILKI 403 (512)
Q Consensus 356 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~c-----p~Le~L~l~~ 403 (512)
...+....+.+++|+.|.+..|... ..+...+++.+ |+|..|-.+.
T Consensus 231 S~~La~al~~W~~lrEL~lnDClls--~~G~~~v~~~f~e~~~p~l~~L~~~Y 281 (388)
T COG5238 231 SRYLADALCEWNLLRELRLNDCLLS--NEGVKSVLRRFNEKFVPNLMPLPGDY 281 (388)
T ss_pred HHHHHHHhcccchhhhccccchhhc--cccHHHHHHHhhhhcCCCccccccch
Confidence 3222246678889999999887532 12444444443 6776665543
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.79 E-value=0.0052 Score=43.72 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=22.4
Q ss_pred CCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeC
Q 043655 163 DSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFN 204 (512)
Q Consensus 163 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 204 (512)
++|++|.|++|.. -.+++. ...++++|++|+++++.+..
T Consensus 1 p~L~~L~l~~n~l-~~i~~~--~f~~l~~L~~L~l~~N~l~~ 39 (61)
T PF13855_consen 1 PNLESLDLSNNKL-TEIPPD--SFSNLPNLETLDLSNNNLTS 39 (61)
T ss_dssp TTESEEEETSSTE-SEECTT--TTTTGTTESEEEETSSSESE
T ss_pred CcCcEEECCCCCC-CccCHH--HHcCCCCCCEeEccCCccCc
Confidence 4677788877421 133332 23457777777777666643
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.29 E-value=0.014 Score=41.53 Aligned_cols=57 Identities=32% Similarity=0.341 Sum_probs=31.4
Q ss_pred cccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccc-hhcccccccceeeecccc
Q 043655 190 RSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLK-QLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 190 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~-~l~~~cp~Le~L~l~~c~ 250 (512)
|+|++|.|+++.+..-+. +.+ .++|+|++|++.++. .+. ..+.++++|+.|++.+|.
T Consensus 1 p~L~~L~l~~n~l~~i~~--~~f--~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPP--DSF--SNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECT--TTT--TTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCH--HHH--cCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 456666666665543110 111 356777777776554 222 345566777777776653
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.11 E-value=0.03 Score=55.78 Aligned_cols=135 Identities=13% Similarity=0.111 Sum_probs=68.5
Q ss_pred ccCCccEEEEecccCccccCCCccccccCc-ccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccccchhccccc
Q 043655 161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFR-SLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCR 239 (512)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~-~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l~~l~~~cp 239 (512)
.|.++.+|++++| .++..| .+| +|++|.+++|.-.. .+.+ .-.++|++|.+.+|..+..+ -+
T Consensus 50 ~~~~l~~L~Is~c--~L~sLP------~LP~sLtsL~Lsnc~nLt--sLP~----~LP~nLe~L~Ls~Cs~L~sL---P~ 112 (426)
T PRK15386 50 EARASGRLYIKDC--DIESLP------VLPNELTEITIENCNNLT--TLPG----SIPEGLEKLTVCHCPEISGL---PE 112 (426)
T ss_pred HhcCCCEEEeCCC--CCcccC------CCCCCCcEEEccCCCCcc--cCCc----hhhhhhhheEccCccccccc---cc
Confidence 3688899999885 222212 233 68888887653211 1111 12357888888877655433 24
Q ss_pred ccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEE-EeCCCcceEEeeccccCCCccccCcccceeeEEee
Q 043655 240 ALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVK-IDASKLKVLNWEYNAITASSSLENLASLHEASVGF 316 (512)
Q Consensus 240 ~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~-i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~ 316 (512)
.|+.|.+.. .....+..--++|+.|.+.++.... ...+. .--++|++|.+.++...... -.--.+|+.++++.
T Consensus 113 sLe~L~L~~-n~~~~L~~LPssLk~L~I~~~n~~~--~~~lp~~LPsSLk~L~Is~c~~i~LP-~~LP~SLk~L~ls~ 186 (426)
T PRK15386 113 SVRSLEIKG-SATDSIKNVPNGLTSLSINSYNPEN--QARIDNLISPSLKTLSLTGCSNIILP-EKLPESLQSITLHI 186 (426)
T ss_pred ccceEEeCC-CCCcccccCcchHhheecccccccc--ccccccccCCcccEEEecCCCcccCc-ccccccCcEEEecc
Confidence 577777653 2222333333577777774421110 00000 12257888887765422110 01124666666653
No 43
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.92 E-value=0.012 Score=55.57 Aligned_cols=36 Identities=33% Similarity=0.487 Sum_probs=34.2
Q ss_pred CCccCCCC----hHHHHHHHccCCchhhHHHhhhcHhHHH
Q 043655 23 IDRISDLP----DAILHHILFLLPIKSIAQTCTLSKRWRS 58 (512)
Q Consensus 23 ~D~is~LP----devl~~Ils~L~~~d~~rts~lSrrWr~ 58 (512)
.|-|+.|| |+|..+|||+|+..++..+-.|||+|+.
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r 111 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR 111 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence 57899999 9999999999999999999999999985
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=94.11 E-value=0.21 Score=55.45 Aligned_cols=168 Identities=19% Similarity=0.120 Sum_probs=85.7
Q ss_pred eeEEeeccCcchhhHHHHHHHhcCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceE
Q 043655 116 VLRFRAHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTL 195 (512)
Q Consensus 116 ~l~l~~~~~~~~~~~wi~~~~~~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L 195 (512)
.-+++.+.-...+.-|++......-+...+. .+.+....|... +-...++..+-++. ...++. ...++.|++|
T Consensus 478 ~~~~kmHDvvRe~al~ias~~~~~~e~~iv~-~~~~~~~~~~~~-~~~~~rr~s~~~~~-~~~~~~----~~~~~~L~tL 550 (889)
T KOG4658|consen 478 KETVKMHDVVREMALWIASDFGKQEENQIVS-DGVGLSEIPQVK-SWNSVRRMSLMNNK-IEHIAG----SSENPKLRTL 550 (889)
T ss_pred eeEEEeeHHHHHHHHHHhccccccccceEEE-CCcCcccccccc-chhheeEEEEeccc-hhhccC----CCCCCccceE
Confidence 3444444334456667666544334442222 111223344332 23455566655421 112221 2357788888
Q ss_pred EeeeEE--eeCccchhhhhcCCCCcccceeccccccccchh---cccccccceeeeccccCccceeEec---cCcceEEE
Q 043655 196 SLSLVI--LFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQL---KVGCRALEDLTLDNCIQLCGLDIFG---TKLERLRV 267 (512)
Q Consensus 196 ~L~~~~--~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l~~l---~~~cp~Le~L~l~~c~~l~~~~v~~---~~L~~L~l 267 (512)
-+..+. +.... .++| .+.|.|..|+|++|..+..+ ++..-+|+.|++.++. +..+...- ..|.+|++
T Consensus 551 ll~~n~~~l~~is--~~ff--~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 551 LLQRNSDWLLEIS--GEFF--RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNL 625 (889)
T ss_pred EEeecchhhhhcC--HHHH--hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheecc
Confidence 888765 22211 1112 36899999999987754444 6677788888888875 33222222 34555666
Q ss_pred eeeccccCCCceEEEeCCCcceEEeeccc
Q 043655 268 ASCFDAYCDKSWVKIDASKLKVLNWEYNA 296 (512)
Q Consensus 268 ~~c~~~~~~~~~~~i~~p~L~~L~~~~~~ 296 (512)
..+..... ...+.-..++|++|.+.+..
T Consensus 626 ~~~~~l~~-~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 626 EVTGRLES-IPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccccc-ccchhhhcccccEEEeeccc
Confidence 55322111 11122236788888776653
No 45
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.09 E-value=0.0061 Score=56.28 Aligned_cols=52 Identities=19% Similarity=0.191 Sum_probs=28.9
Q ss_pred CcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCCccccCcccceeeEEe
Q 043655 261 KLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVG 315 (512)
Q Consensus 261 ~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~ 315 (512)
+.++|+.++|.... .++...+|.|+.|.++-+.+.....+..|.+|+++++.
T Consensus 20 ~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLR 71 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLR 71 (388)
T ss_pred HhhhhcccCCCccH---HHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHH
Confidence 45666666663221 12223567777777766655554555556666665553
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=93.93 E-value=0.045 Score=51.23 Aligned_cols=100 Identities=19% Similarity=0.100 Sum_probs=67.4
Q ss_pred CcceEEeeccccCCC-ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccc
Q 043655 286 KLKVLNWEYNAITAS-SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLH 364 (512)
Q Consensus 286 ~L~~L~~~~~~~~~~-~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~ 364 (512)
.|+.++++++.+... ....-+|.++.++++......- .-++.+++++.|+++++.+..... +-.
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v----------~nLa~L~~L~~LDLS~N~Ls~~~G-----wh~ 349 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV----------QNLAELPQLQLLDLSGNLLAECVG-----WHL 349 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccceeee----------hhhhhcccceEeecccchhHhhhh-----hHh
Confidence 588888888766432 3445678999988886654322 127788999999999887644432 444
Q ss_pred cccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEeec
Q 043655 365 TFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIIN 405 (512)
Q Consensus 365 ~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~~ 405 (512)
.+.|++.|.|..+.- .+ .+-|...-+|+.|++....
T Consensus 350 KLGNIKtL~La~N~i-E~----LSGL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKI-ET----LSGLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred hhcCEeeeehhhhhH-hh----hhhhHhhhhheeccccccc
Confidence 788999998865311 12 2345667788888887543
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=0.021 Score=53.34 Aligned_cols=176 Identities=15% Similarity=0.130 Sum_probs=92.2
Q ss_pred ccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc----ccchhcccccccceeeeccccC----ccc--ee
Q 043655 187 GGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY----GLKQLKVGCRALEDLTLDNCIQ----LCG--LD 256 (512)
Q Consensus 187 ~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~----~l~~l~~~cp~Le~L~l~~c~~----l~~--~~ 256 (512)
.++|+|++|+|+++.+..+-+- + .....+|++|.|.+.. ....++...|.+++|+++.... +++ .+
T Consensus 94 e~lP~l~~LNls~N~L~s~I~~--l--p~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e 169 (418)
T KOG2982|consen 94 EQLPALTTLNLSCNSLSSDIKS--L--PLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIE 169 (418)
T ss_pred hcCccceEeeccCCcCCCcccc--C--cccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccccccc
Confidence 4577777777777766553210 0 0134467777776654 4566677788888888777631 111 12
Q ss_pred EeccCcceEEEeeeccc-cCCCceEEEeCCCcceEEeeccccCCC---ccccCcccceeeEEeeEEcccchhHHHHhHHH
Q 043655 257 IFGTKLERLRVASCFDA-YCDKSWVKIDASKLKVLNWEYNAITAS---SSLENLASLHEASVGFILLHEDLTSAKLQSVS 332 (512)
Q Consensus 257 v~~~~L~~L~l~~c~~~-~~~~~~~~i~~p~L~~L~~~~~~~~~~---~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 332 (512)
-.++.+++|.+..|... +.....+.-.-||+..+....+++.+. -.....|.+.-+.++-..+.+- .-.
T Consensus 170 ~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idsw-------asv 242 (418)
T KOG2982|consen 170 DWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSW-------ASV 242 (418)
T ss_pred ccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccH-------HHH
Confidence 23467888888887432 111222333457777776665543211 2233455555444443322111 123
Q ss_pred HHhhcCCcccEeeecchhhhhhcccc--cccccccccccceEE
Q 043655 333 NFLSGLSHARSLTLESPCIEILSNRN--YFTNLHTFTNLKSLE 373 (512)
Q Consensus 333 ~~l~~l~~l~~L~l~~~~~~~~~~~~--~~~~~~~~~~L~~L~ 373 (512)
.-+.+++.+..|.+....+-..-... ..-....+++++.|+
T Consensus 243 D~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 243 DALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred HHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 45777888888887765532211111 112344566666664
No 48
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=93.76 E-value=0.032 Score=52.41 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=31.3
Q ss_pred CCccCCCChHHHHHHHcc-----CCchhhHHHhhhcHhHHH
Q 043655 23 IDRISDLPDAILHHILFL-----LPIKSIAQTCTLSKRWRS 58 (512)
Q Consensus 23 ~D~is~LPdevl~~Ils~-----L~~~d~~rts~lSrrWr~ 58 (512)
-+.|+.||||||..||.. |+.++..++|+|||.|+.
T Consensus 104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~ 144 (366)
T KOG2997|consen 104 LISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK 144 (366)
T ss_pred hhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence 455789999999999964 567999999999999985
No 49
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.72 E-value=0.019 Score=52.76 Aligned_cols=71 Identities=23% Similarity=0.154 Sum_probs=46.8
Q ss_pred HHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEeecc
Q 043655 333 NFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIIND 406 (512)
Q Consensus 333 ~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~~~ 406 (512)
-+...+|++++|.++.+.++.+.. ....+.+.||..|.+..+....-..-=..+++-.|.|.+|+-....+
T Consensus 85 vl~e~~P~l~~l~ls~Nki~~lst---l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 85 VLAEKAPNLKVLNLSGNKIKDLST---LRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred ehhhhCCceeEEeecCCccccccc---cchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 345567999999999888765332 13556788899999987643211122246777788888887654443
No 50
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=93.50 E-value=0.074 Score=30.35 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=17.0
Q ss_pred ccceEEeeeEEeeCccchhhhh
Q 043655 191 SLHTLSLSLVILFNQPCLLDLF 212 (512)
Q Consensus 191 ~L~~L~L~~~~~~~~~~l~~l~ 212 (512)
+|++|+|..+.+.++..+..++
T Consensus 1 sLKtL~L~~v~f~~~~~l~~Ll 22 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLL 22 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhh
Confidence 5899999999997766665544
No 51
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=93.48 E-value=0.0097 Score=65.76 Aligned_cols=80 Identities=24% Similarity=0.232 Sum_probs=44.0
Q ss_pred ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeC-ccchhhhhcCCCCcccceeccccccc---cchhcc
Q 043655 161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFN-QPCLLDLFTDSSFPHLKKLDLDACYG---LKQLKV 236 (512)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~l~~l~~~~~~p~L~~L~L~~~~~---l~~l~~ 236 (512)
..+.|++|+|++|.....+|.. .+.+-+|+.|+|++..+.. +.+++ .+..|.+|++..... +..+..
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~~---I~~Li~LryL~L~~t~I~~LP~~l~------~Lk~L~~Lnl~~~~~l~~~~~i~~ 639 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPSS---IGELVHLRYLDLSDTGISHLPSGLG------NLKKLIYLNLEVTGRLESIPGILL 639 (889)
T ss_pred hCcceEEEECCCCCccCcCChH---HhhhhhhhcccccCCCccccchHHH------HHHhhheeccccccccccccchhh
Confidence 3566777777765444455532 2346667777776666653 22332 345666666665542 223334
Q ss_pred cccccceeeeccc
Q 043655 237 GCRALEDLTLDNC 249 (512)
Q Consensus 237 ~cp~Le~L~l~~c 249 (512)
..++|+.|.+..-
T Consensus 640 ~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 640 ELQSLRVLRLPRS 652 (889)
T ss_pred hcccccEEEeecc
Confidence 4566666666554
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=93.22 E-value=0.014 Score=60.88 Aligned_cols=59 Identities=36% Similarity=0.357 Sum_probs=36.5
Q ss_pred CCCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecch
Q 043655 284 ASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESP 349 (512)
Q Consensus 284 ~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~ 349 (512)
+-.|+.|.+.++.++....+.++.+|+.+++++....+... ..+|..+..|+.|.+.++
T Consensus 231 gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hse-------L~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 231 GCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSE-------LEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchh-------hhHHHHHHHHHHHhhcCC
Confidence 34478888888777666667888888888887654433221 233444445555555543
No 53
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=93.11 E-value=0.066 Score=52.67 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=32.9
Q ss_pred cCCCChHHHHHHHccCCc-hhhHHHhhhcHhHHHhhcc
Q 043655 26 ISDLPDAILHHILFLLPI-KSIAQTCTLSKRWRSLWCS 62 (512)
Q Consensus 26 is~LPdevl~~Ils~L~~-~d~~rts~lSrrWr~lw~~ 62 (512)
.++||+|+|..|..+|+. -|.+|.+.|||.||..-..
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 578999999999999985 6999999999999986443
No 54
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=92.93 E-value=0.0075 Score=51.61 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=26.6
Q ss_pred CCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeC
Q 043655 152 YFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFN 204 (512)
Q Consensus 152 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 204 (512)
...+|-++.+.+.|+.|+++.+ .+...|.+ ++.||.|+.|+|.++.+..
T Consensus 68 ie~lp~~issl~klr~lnvgmn--rl~~lprg--fgs~p~levldltynnl~e 116 (264)
T KOG0617|consen 68 IEELPTSISSLPKLRILNVGMN--RLNILPRG--FGSFPALEVLDLTYNNLNE 116 (264)
T ss_pred hhhcChhhhhchhhhheecchh--hhhcCccc--cCCCchhhhhhcccccccc
Confidence 3456666666666666666653 23333332 2456666666666555543
No 55
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.71 E-value=0.00077 Score=65.09 Aligned_cols=100 Identities=18% Similarity=0.233 Sum_probs=62.7
Q ss_pred CcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHH-HHHhhcCCcccEeeecchhhhhhcccccccccc
Q 043655 286 KLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSV-SNFLSGLSHARSLTLESPCIEILSNRNYFTNLH 364 (512)
Q Consensus 286 ~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~ 364 (512)
+|+.|.+..+.+.....++++..|++++++...+ ..+ ...++.++++..|++.++.++...+ ...
T Consensus 207 ~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i---------~~lpae~~~~L~~l~vLDLRdNklke~Pd-----e~c 272 (565)
T KOG0472|consen 207 SLELLYLRRNKIRFLPEFPGCSLLKELHVGENQI---------EMLPAEHLKHLNSLLVLDLRDNKLKEVPD-----EIC 272 (565)
T ss_pred hhHHHHhhhcccccCCCCCccHHHHHHHhcccHH---------HhhHHHHhcccccceeeeccccccccCch-----HHH
Confidence 4444445555554456678888888888774422 221 3357788999999998887665544 333
Q ss_pred cccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEee
Q 043655 365 TFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKII 404 (512)
Q Consensus 365 ~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~ 404 (512)
.+.+|.+|+++.. +..+++.=|.+. +|+.|.+++.
T Consensus 273 lLrsL~rLDlSNN----~is~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 273 LLRSLERLDLSNN----DISSLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred HhhhhhhhcccCC----ccccCCcccccc-eeeehhhcCC
Confidence 5667777777653 344555555566 6777766654
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.58 E-value=0.17 Score=44.79 Aligned_cols=58 Identities=34% Similarity=0.333 Sum_probs=39.9
Q ss_pred ccCcccceEEeeeEEeeC-ccchhhhhcCCCCcccceecccccc-----ccchhcccccccceeeecccc
Q 043655 187 GGFRSLHTLSLSLVILFN-QPCLLDLFTDSSFPHLKKLDLDACY-----GLKQLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 187 ~~~~~L~~L~L~~~~~~~-~~~l~~l~~~~~~p~L~~L~L~~~~-----~l~~l~~~cp~Le~L~l~~c~ 250 (512)
.++++|.+|.|.++++.. ++.+.. -+|+|+.|.|.+.+ .+..+ ..||+|++|.+.+..
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~-----~~p~l~~L~LtnNsi~~l~dl~pL-a~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDT-----FLPNLKTLILTNNSIQELGDLDPL-ASCPKLEYLTLLGNP 124 (233)
T ss_pred CCccccceEEecCCcceeeccchhh-----hccccceEEecCcchhhhhhcchh-ccCCccceeeecCCc
Confidence 367888888888888876 334433 36888888888765 23333 468888888877754
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=92.06 E-value=0.14 Score=33.53 Aligned_cols=16 Identities=31% Similarity=0.223 Sum_probs=9.0
Q ss_pred cccccccceeeecccc
Q 043655 235 KVGCRALEDLTLDNCI 250 (512)
Q Consensus 235 ~~~cp~Le~L~l~~c~ 250 (512)
+..+++|+.|++.++.
T Consensus 20 l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 20 LSNLPNLETLNLSNNP 35 (44)
T ss_dssp GTTCTTSSEEEETSSC
T ss_pred HhCCCCCCEEEecCCC
Confidence 3455666666666553
No 58
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=91.92 E-value=0.031 Score=54.32 Aligned_cols=100 Identities=18% Similarity=0.199 Sum_probs=57.7
Q ss_pred CCceeEEEeccCCCCCCCcceeccCCccEEEEecccCcc-ccCCCccccccCcccceEEeeeEEeeC--ccchhhhhcCC
Q 043655 139 NVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGF-RLPPSSVVAGGFRSLHTLSLSLVILFN--QPCLLDLFTDS 215 (512)
Q Consensus 139 ~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~--~~~l~~l~~~~ 215 (512)
+++-..++....+...+|..+ -++-+.++|..| .+ .+|+.. +..+++|++|+|+++.+.. .+.| .
T Consensus 45 ~~~g~~VdCr~~GL~eVP~~L--P~~tveirLdqN--~I~~iP~~a--F~~l~~LRrLdLS~N~Is~I~p~AF------~ 112 (498)
T KOG4237|consen 45 DVEGGIVDCRGKGLTEVPANL--PPETVEIRLDQN--QISSIPPGA--FKTLHRLRRLDLSKNNISFIAPDAF------K 112 (498)
T ss_pred CCCCceEEccCCCcccCcccC--CCcceEEEeccC--CcccCChhh--ccchhhhceecccccchhhcChHhh------h
Confidence 334455555554444555443 233456666663 33 345433 3578888999998887754 3334 3
Q ss_pred CCcccceeccccccccchh----cccccccceeeecccc
Q 043655 216 SFPHLKKLDLDACYGLKQL----KVGCRALEDLTLDNCI 250 (512)
Q Consensus 216 ~~p~L~~L~L~~~~~l~~l----~~~cp~Le~L~l~~c~ 250 (512)
+.++|-+|.+++...|+.+ +.+...|+.|.+.-|.
T Consensus 113 GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~ 151 (498)
T KOG4237|consen 113 GLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH 151 (498)
T ss_pred hhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence 6788888888885544443 3344556666665543
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=91.64 E-value=0.27 Score=49.18 Aligned_cols=115 Identities=18% Similarity=0.208 Sum_probs=65.6
Q ss_pred cCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccccchhccc-ccccceeeeccccCccceeEeccCcceEE
Q 043655 188 GFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVG-CRALEDLTLDNCIQLCGLDIFGTKLERLR 266 (512)
Q Consensus 188 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l~~l~~~-cp~Le~L~l~~c~~l~~~~v~~~~L~~L~ 266 (512)
.+++++.|++++|.+..-.. --++|+.|.+.+|..+..+-.. .++|+.|.+.+|..+..+ .++|+.|.
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~--------LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sL---P~sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV--------LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGL---PESVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC--------CCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccc---ccccceEE
Confidence 36888999998885543211 1236888888888766554432 357888888888655432 25688887
Q ss_pred EeeeccccCCCceEEEeCCCcceEEeeccccCCCcccc-Cc-ccceeeEEeeEE
Q 043655 267 VASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLE-NL-ASLHEASVGFIL 318 (512)
Q Consensus 267 l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~-~~-~~L~~l~l~~~~ 318 (512)
+.+... ..+..--++|+.|.+.+........+. .+ ++|+.+++..|.
T Consensus 119 L~~n~~-----~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~ 167 (426)
T PRK15386 119 IKGSAT-----DSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCS 167 (426)
T ss_pred eCCCCC-----cccccCcchHhheeccccccccccccccccCCcccEEEecCCC
Confidence 753211 112223356777776542211111111 11 467777776543
No 60
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.53 E-value=0.029 Score=49.51 Aligned_cols=53 Identities=26% Similarity=0.416 Sum_probs=28.9
Q ss_pred CCcccceecccccc-----ccchhcccccccceeeeccccCccceeEec----cCcceEEEe
Q 043655 216 SFPHLKKLDLDACY-----GLKQLKVGCRALEDLTLDNCIQLCGLDIFG----TKLERLRVA 268 (512)
Q Consensus 216 ~~p~L~~L~L~~~~-----~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~----~~L~~L~l~ 268 (512)
+++.|+.|.+.+|+ ++..+-...|+|++|+|.+|..+++-.+.. ++||.|.|.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 34445555555544 344454456777777777777665544432 445555443
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=91.16 E-value=0.11 Score=45.91 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=65.5
Q ss_pred CcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccccccc
Q 043655 286 KLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHT 365 (512)
Q Consensus 286 ~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~ 365 (512)
....++++++.+.....+..+++|..+.++...+..-. ..+..-+++++.|.++.+.++.+.+-. ....
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~--------p~L~~~~p~l~~L~LtnNsi~~l~dl~---pLa~ 111 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRID--------PDLDTFLPNLKTLILTNNSIQELGDLD---PLAS 111 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeec--------cchhhhccccceEEecCcchhhhhhcc---hhcc
Confidence 34445555544433344556667777777655432111 123445688999999998887776654 4456
Q ss_pred ccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEeec
Q 043655 366 FTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIIN 405 (512)
Q Consensus 366 ~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~~ 405 (512)
||.|++|.+-......-..-=...+...|+|+.|+++...
T Consensus 112 ~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 112 CPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 7788888876542211111123456788999999987654
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=90.67 E-value=0.12 Score=33.87 Aligned_cols=15 Identities=33% Similarity=0.343 Sum_probs=7.7
Q ss_pred cCcccceEEeeeEEe
Q 043655 188 GFRSLHTLSLSLVIL 202 (512)
Q Consensus 188 ~~~~L~~L~L~~~~~ 202 (512)
.+++|+.|+++++.+
T Consensus 22 ~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 22 NLPNLETLNLSNNPI 36 (44)
T ss_dssp TCTTSSEEEETSSCC
T ss_pred CCCCCCEEEecCCCC
Confidence 455555555555444
No 63
>PF13013 F-box-like_2: F-box-like domain
Probab=90.42 E-value=0.34 Score=38.69 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=31.4
Q ss_pred ccCCCChHHHHHHHccCCchhhHHHhhhcH--hH-HHh-hccC
Q 043655 25 RISDLPDAILHHILFLLPIKSIAQTCTLSK--RW-RSL-WCSF 63 (512)
Q Consensus 25 ~is~LPdevl~~Ils~L~~~d~~rts~lSr--rW-r~l-w~~~ 63 (512)
.+.+||+||+..|+.+-...+....+..++ || ++. |..+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~~~~~L 63 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDHIWYLL 63 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999988888887 44 443 5443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.37 E-value=0.059 Score=49.53 Aligned_cols=34 Identities=35% Similarity=0.430 Sum_probs=18.2
Q ss_pred Ccccceeccccc-----cccchhcccccccceeeecccc
Q 043655 217 FPHLKKLDLDAC-----YGLKQLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 217 ~p~L~~L~L~~~-----~~l~~l~~~cp~Le~L~l~~c~ 250 (512)
+|+|++|.+... .++..+...||+|..|++++..
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 445555555433 1445555556666666666653
No 65
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=89.89 E-value=0.018 Score=49.31 Aligned_cols=107 Identities=20% Similarity=0.265 Sum_probs=51.8
Q ss_pred eCCCcceEEeeccccC-CCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccc
Q 043655 283 DASKLKVLNWEYNAIT-ASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFT 361 (512)
Q Consensus 283 ~~p~L~~L~~~~~~~~-~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~ 361 (512)
+.|+|+.|.+.-+... -...++.+|.|+-+++.+....+......+. .+..++.|.++.+.++++..
T Consensus 77 sl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff-------~m~tlralyl~dndfe~lp~----- 144 (264)
T KOG0617|consen 77 SLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFF-------YMTTLRALYLGDNDFEILPP----- 144 (264)
T ss_pred hchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchh-------HHHHHHHHHhcCCCcccCCh-----
Confidence 4566666665543321 1133556666666666655433221100000 01113334444444333221
Q ss_pred ccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEeec
Q 043655 362 NLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIIN 405 (512)
Q Consensus 362 ~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~~ 405 (512)
....+.+|+.|.+. +.+...++.=+...+.|+.|+|++..
T Consensus 145 dvg~lt~lqil~lr----dndll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 145 DVGKLTNLQILSLR----DNDLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhhhhcceeEEeec----cCchhhCcHHHHHHHHHHHHhcccce
Confidence 11233444444443 33566677777788888888888754
No 66
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.49 E-value=0.073 Score=51.95 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=31.0
Q ss_pred cccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEee
Q 043655 363 LHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKII 404 (512)
Q Consensus 363 ~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~ 404 (512)
+..+.+|+.|+|.. .+...++.++++|++|+.|++.+.
T Consensus 501 l~nm~nL~tLDL~n----Ndlq~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQN----NDLQQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred hhhhhhcceeccCC----CchhhCChhhccccceeEEEecCC
Confidence 44567888887754 477899999999999999999864
No 67
>PLN03150 hypothetical protein; Provisional
Probab=87.80 E-value=0.42 Score=51.42 Aligned_cols=79 Identities=18% Similarity=0.136 Sum_probs=37.7
Q ss_pred ccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc---ccchhccccccc
Q 043655 165 LRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY---GLKQLKVGCRAL 241 (512)
Q Consensus 165 L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~---~l~~l~~~cp~L 241 (512)
++.|+|.++.....+|.. ...+++|+.|+|+++.+.+. +...+ ..+++|+.|+|.++. .+...+..+++|
T Consensus 420 v~~L~L~~n~L~g~ip~~---i~~L~~L~~L~Ls~N~l~g~--iP~~~--~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPND---ISKLRHLQSINLSGNSIRGN--IPPSL--GSITSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEECCCCCccccCCHH---HhCCCCCCEEECCCCcccCc--CChHH--hCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 555666653222222221 23466667777766665431 11111 245666666665553 222333455555
Q ss_pred ceeeecccc
Q 043655 242 EDLTLDNCI 250 (512)
Q Consensus 242 e~L~l~~c~ 250 (512)
+.|+|.++.
T Consensus 493 ~~L~Ls~N~ 501 (623)
T PLN03150 493 RILNLNGNS 501 (623)
T ss_pred CEEECcCCc
Confidence 555555543
No 68
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=86.34 E-value=0.37 Score=27.36 Aligned_cols=18 Identities=28% Similarity=0.695 Sum_probs=13.5
Q ss_pred ccccceeeeccccCccce
Q 043655 238 CRALEDLTLDNCIQLCGL 255 (512)
Q Consensus 238 cp~Le~L~l~~c~~l~~~ 255 (512)
||+|+.|+|.+|..+++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 678888888888776654
No 69
>PLN03150 hypothetical protein; Provisional
Probab=86.07 E-value=0.63 Score=50.09 Aligned_cols=69 Identities=22% Similarity=0.305 Sum_probs=50.0
Q ss_pred CCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc
Q 043655 154 NLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY 229 (512)
Q Consensus 154 ~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~ 229 (512)
.+|..+..+++|+.|+|++|.....+|.. ...+++|+.|+|+++.+.+. +...+ ..+++|+.|+|.++.
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~---~~~l~~L~~LdLs~N~lsg~--iP~~l--~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGNIPPS---LGSITSLEVLDLSYNSFNGS--IPESL--GQLTSLRILNLNGNS 501 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCcCChH---HhCCCCCCEEECCCCCCCCC--CchHH--hcCCCCCEEECcCCc
Confidence 45666667899999999986433344432 35799999999999988752 11112 378999999999875
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=85.20 E-value=3.5 Score=38.57 Aligned_cols=176 Identities=15% Similarity=0.083 Sum_probs=97.9
Q ss_pred CCcceEEeeccccCCC------ccccCcccceeeEEeeEEc--ccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcc
Q 043655 285 SKLKVLNWEYNAITAS------SSLENLASLHEASVGFILL--HEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSN 356 (512)
Q Consensus 285 p~L~~L~~~~~~~~~~------~~l~~~~~L~~l~l~~~~~--~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~ 356 (512)
..+..++++|+.+... ..+.+..+|+.++++.... ..+..+.....+...+-+||+++..+++.+.+..-..
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4566677777765322 2233455666555542211 1222333344566677789999999999876432222
Q ss_pred cccccccccccccceEEEEeeccCCcH-HHHH---------HHHhhCCCCcEEEEEeecccchhhhcccccccCccCccc
Q 043655 357 RNYFTNLHTFTNLKSLELHTGFNKHNV-QGLA---------CLFRSSPSIHTLILKIINDYKIQRRQWNRDLWDMYTSEE 426 (512)
Q Consensus 357 ~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~l~---------~~L~~cp~Le~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (512)
..+-.....-.+|+||.+.++-.+.-. .-+. +=..+-|.|+.....-.+ ... -+
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-len---------------gs 173 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LEN---------------GS 173 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hcc---------------Cc
Confidence 211124456679999999875332111 1121 223456778777664211 110 13
Q ss_pred hhhhhccccCchhhhcCccEEEEeeeccchhH--HHHHHHHHhcCccccceEEEecc
Q 043655 427 EQYWQSQSQTLKPFLNNLNVVEIHGFLECENE--VSLAKFLLKHGKALQEMTLCTGH 481 (512)
Q Consensus 427 ~~~w~~~~~~~~~~~~~L~~v~i~~~~g~~~e--~~l~~~ll~~a~~L~~m~i~~~~ 481 (512)
...|..- .+. +..|++|+|. +.|...+ -.++-+=+..+..|+.+.+....
T Consensus 174 ~~~~a~~---l~s-h~~lk~vki~-qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 174 KELSAAL---LES-HENLKEVKIQ-QNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred HHHHHHH---HHh-hcCceeEEee-ecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence 4456532 121 4579999998 4454322 45666667889999999988753
No 71
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=84.62 E-value=0.31 Score=49.36 Aligned_cols=37 Identities=32% Similarity=0.467 Sum_probs=21.4
Q ss_pred HhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEe
Q 043655 334 FLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHT 376 (512)
Q Consensus 334 ~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 376 (512)
.+..+++++.|+++...+..+. ....+.++++|++..
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~------~~~~~~~l~~L~~s~ 286 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSIS------SLGSLTNLRELDLSG 286 (394)
T ss_pred hhccccccceeccccccccccc------cccccCccCEEeccC
Confidence 4555666777777666543332 133556677776654
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.32 E-value=0.043 Score=50.84 Aligned_cols=102 Identities=21% Similarity=0.201 Sum_probs=47.8
Q ss_pred CcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccccccc
Q 043655 286 KLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHT 365 (512)
Q Consensus 286 ~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~ 365 (512)
+.+.|++.|+.+.+......||.|+-+.++...+.+ ..-+..|.+|+.|.|.-+.++.+.+-. -+..
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIss----------L~pl~rCtrLkElYLRkN~I~sldEL~---YLkn 86 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISS----------LAPLQRCTRLKELYLRKNCIESLDELE---YLKN 86 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeecccccc----------chhHHHHHHHHHHHHHhcccccHHHHH---HHhc
Confidence 344555555555444445556666666655443221 112445555565555555544333221 1224
Q ss_pred ccccceEEEEe--eccCCcHHHHHHHHhhCCCCcEEE
Q 043655 366 FTNLKSLELHT--GFNKHNVQGLACLFRSSPSIHTLI 400 (512)
Q Consensus 366 ~~~L~~L~L~~--~~~~~~~~~l~~~L~~cp~Le~L~ 400 (512)
+++|+.|=|.. |+......-=...|+..|||++|+
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 44555555542 112222222344566666666665
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.30 E-value=0.12 Score=45.85 Aligned_cols=67 Identities=28% Similarity=0.391 Sum_probs=47.6
Q ss_pred ccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccccch----hcccccccceeeeccccCccce
Q 043655 187 GGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQ----LKVGCRALEDLTLDNCIQLCGL 255 (512)
Q Consensus 187 ~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l~~----l~~~cp~Le~L~l~~c~~l~~~ 255 (512)
.+++.++.|++.+|...++.++..+-. -.|+|+.|+|.+|..|.. .+...++|+.|.|.+-..+...
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~--~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGG--LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcc--cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhch
Confidence 457778888888888888777776643 678899999988874432 2245688888888877654433
No 74
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=81.63 E-value=0.89 Score=45.96 Aligned_cols=166 Identities=23% Similarity=0.232 Sum_probs=87.4
Q ss_pred cCCccEEEEecccCccccCCCccccccC-cccceEEeeeEEeeCc-cchhhhhcCCCCcccceecccccc--ccchhccc
Q 043655 162 SDSLRVFKLRSRYRGFRLPPSSVVAGGF-RSLHTLSLSLVILFNQ-PCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVG 237 (512)
Q Consensus 162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~-~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~ 237 (512)
.+.++.|.+.++. ...+++.. .-+ ++|+.|+++.+.+..- ..+ ..+|+|+.|++.++. .+......
T Consensus 115 ~~~l~~L~l~~n~-i~~i~~~~---~~~~~nL~~L~l~~N~i~~l~~~~------~~l~~L~~L~l~~N~l~~l~~~~~~ 184 (394)
T COG4886 115 LTNLTSLDLDNNN-ITDIPPLI---GLLKSNLKELDLSDNKIESLPSPL------RNLPNLKNLDLSFNDLSDLPKLLSN 184 (394)
T ss_pred ccceeEEecCCcc-cccCcccc---ccchhhcccccccccchhhhhhhh------hccccccccccCCchhhhhhhhhhh
Confidence 4567788877742 12344321 123 3788888888777653 122 368888888888876 44444447
Q ss_pred ccccceeeeccccCccceeEe--cc-CcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCC-CccccCcccceeeE
Q 043655 238 CRALEDLTLDNCIQLCGLDIF--GT-KLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITA-SSSLENLASLHEAS 313 (512)
Q Consensus 238 cp~Le~L~l~~c~~l~~~~v~--~~-~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~-~~~l~~~~~L~~l~ 313 (512)
.+.|+.|.+.+.. +..+... .+ .|++|.+..-... ......-...++..+.+.+..... ...++.++.++.++
T Consensus 185 ~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~--~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~ 261 (394)
T COG4886 185 LSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSII--ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLD 261 (394)
T ss_pred hhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcce--ecchhhhhcccccccccCCceeeeccchhccccccceec
Confidence 7888888888875 2333221 22 3666666553100 000001123344444433333222 23345566666666
Q ss_pred EeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchh
Q 043655 314 VGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPC 350 (512)
Q Consensus 314 l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~ 350 (512)
+....... +.. +..+.+++.|+++...
T Consensus 262 ~s~n~i~~---------i~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 262 LSNNQISS---------ISS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred cccccccc---------ccc-ccccCccCEEeccCcc
Confidence 65443211 111 5556667777776543
No 75
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=80.77 E-value=0.16 Score=53.40 Aligned_cols=102 Identities=20% Similarity=0.101 Sum_probs=55.3
Q ss_pred cCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCCcccc--CcccceeeEEeeEEcccchhHHHHhHHHHHhhc
Q 043655 260 TKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLE--NLASLHEASVGFILLHEDLTSAKLQSVSNFLSG 337 (512)
Q Consensus 260 ~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~ 337 (512)
|.|++|+++...... .....++|.|+.|+++.+.......++ ++ .|+.+.+...... . ..-+..
T Consensus 187 ~ale~LnLshNk~~~---v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~---------t-L~gie~ 252 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTK---VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALT---------T-LRGIEN 252 (1096)
T ss_pred HHhhhhccchhhhhh---hHHHHhcccccccccccchhccccccchhhh-hheeeeecccHHH---------h-hhhHHh
Confidence 566667666532211 112236788888888776543332222 23 3666666533211 1 112456
Q ss_pred CCcccEeeecchhhhhhcccccccccccccccceEEEEeec
Q 043655 338 LSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGF 378 (512)
Q Consensus 338 l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 378 (512)
+.+|..|+++++.+..-..- ..+-.+..|+.|.|..++
T Consensus 253 LksL~~LDlsyNll~~hseL---~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSEL---EPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhhccchhHhhhhcchhh---hHHHHHHHHHHHhhcCCc
Confidence 67788889988775443321 122345678888887643
No 76
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=80.25 E-value=0.78 Score=48.08 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=36.6
Q ss_pred CCCCCccCCCChHHHHHHHccCCchhhHHHhhhcHhHHHh
Q 043655 20 DNGIDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSL 59 (512)
Q Consensus 20 ~~~~D~is~LPdevl~~Ils~L~~~d~~rts~lSrrWr~l 59 (512)
....|-|+.||-|+..+||++|+.++.+.++.+|+.|+.+
T Consensus 102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 3457889999999999999999999999999999999964
No 77
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=66.18 E-value=9.6 Score=25.70 Aligned_cols=36 Identities=11% Similarity=0.267 Sum_probs=28.2
Q ss_pred cccceEEEEeecc-CCcHHHHHHHHhhCCCCcEEEEE
Q 043655 367 TNLKSLELHTGFN-KHNVQGLACLFRSSPSIHTLILK 402 (512)
Q Consensus 367 ~~L~~L~L~~~~~-~~~~~~l~~~L~~cp~Le~L~l~ 402 (512)
.+|+.+.+..... ..+...+..++++++.|+++.|.
T Consensus 14 s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 14 SHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred heeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 6889998875332 24566788999999999999985
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=63.18 E-value=2.8 Score=21.06 Aligned_cols=11 Identities=45% Similarity=0.338 Sum_probs=4.3
Q ss_pred ccceEEeeeEE
Q 043655 191 SLHTLSLSLVI 201 (512)
Q Consensus 191 ~L~~L~L~~~~ 201 (512)
+|+.|+|++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 44455544444
No 79
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=61.53 E-value=2.9 Score=42.62 Aligned_cols=81 Identities=26% Similarity=0.290 Sum_probs=49.6
Q ss_pred eCCCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccc
Q 043655 283 DASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTN 362 (512)
Q Consensus 283 ~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~ 362 (512)
.+++|++|.++++.+.....+..++.|+.+++.-..+..-. -+..+.+++.+++++..+..+... .
T Consensus 116 ~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~----------~~~~l~~L~~l~l~~n~i~~ie~~---~- 181 (414)
T KOG0531|consen 116 SLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS----------GLESLKSLKLLDLSYNRIVDIEND---E- 181 (414)
T ss_pred hhhcchheeccccccccccchhhccchhhheeccCcchhcc----------CCccchhhhcccCCcchhhhhhhh---h-
Confidence 47888888888888777666777777777777644322111 133366677777776654443220 0
Q ss_pred cccccccceEEEEee
Q 043655 363 LHTFTNLKSLELHTG 377 (512)
Q Consensus 363 ~~~~~~L~~L~L~~~ 377 (512)
...+.+++.|.+...
T Consensus 182 ~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 182 LSELISLEELDLGGN 196 (414)
T ss_pred hhhccchHHHhccCC
Confidence 235667777777653
No 80
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=56.62 E-value=5.8 Score=40.40 Aligned_cols=56 Identities=23% Similarity=0.266 Sum_probs=26.7
Q ss_pred cCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhcccccccceeeecccc
Q 043655 188 GFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 188 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~ 250 (512)
.+++|+.|+|+++.+.+-.++. .++.|+.|++.++. .+..+ ..++.|+.+++.++.
T Consensus 116 ~~~~L~~L~ls~N~I~~i~~l~------~l~~L~~L~l~~N~i~~~~~~-~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 116 SLVNLQVLDLSFNKITKLEGLS------TLTLLKELNLSGNLISDISGL-ESLKSLKLLDLSYNR 173 (414)
T ss_pred hhhcchheeccccccccccchh------hccchhhheeccCcchhccCC-ccchhhhcccCCcch
Confidence 4556666666666555543332 34445555555543 12221 124455555555543
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=53.19 E-value=4.6 Score=41.56 Aligned_cols=61 Identities=31% Similarity=0.305 Sum_probs=30.0
Q ss_pred cCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc-----ccchhcccccccceeeecccc
Q 043655 188 GFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY-----GLKQLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 188 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~-----~l~~l~~~cp~Le~L~l~~c~ 250 (512)
.+|.+..++|+++++.+-+.+..+.. ..|+|++|+|.+.. ..+--...-..||+|-+.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq--~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQ--IAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNP 281 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHH--hcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCc
Confidence 35555666666665555444444332 45666666665542 111111233456666666643
No 82
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=51.17 E-value=10 Score=29.64 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=22.3
Q ss_pred CccCCCChHHHHHHHccCCchhhHH
Q 043655 24 DRISDLPDAILHHILFLLPIKSIAQ 48 (512)
Q Consensus 24 D~is~LPdevl~~Ils~L~~~d~~r 48 (512)
..++.||.|+...||++|+-+|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5689999999999999999988754
No 83
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=47.47 E-value=14 Score=30.14 Aligned_cols=75 Identities=11% Similarity=0.214 Sum_probs=26.9
Q ss_pred ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeC--ccchhhhhcCCCCcccceeccccc-ccc-chhcc
Q 043655 161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFN--QPCLLDLFTDSSFPHLKKLDLDAC-YGL-KQLKV 236 (512)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--~~~l~~l~~~~~~p~L~~L~L~~~-~~l-~~l~~ 236 (512)
.|++|+.+.+... ...+.... ..++++|+++.+... +.. ...+ .+|++|+.+.+.+. ..+ ...+.
T Consensus 10 ~~~~l~~i~~~~~--~~~I~~~~--F~~~~~l~~i~~~~~-~~~i~~~~F------~~~~~l~~i~~~~~~~~i~~~~F~ 78 (129)
T PF13306_consen 10 NCSNLESITFPNT--IKKIGENA--FSNCTSLKSINFPNN-LTSIGDNAF------SNCKSLESITFPNNLKSIGDNAFS 78 (129)
T ss_dssp T-TT--EEEETST----EE-TTT--TTT-TT-SEEEESST-TSCE-TTTT------TT-TT-EEEEETSTT-EE-TTTTT
T ss_pred CCCCCCEEEECCC--eeEeChhh--ccccccccccccccc-ccccceeee------eccccccccccccccccccccccc
Confidence 4556666666531 12222221 234556666665431 111 1111 34555666666331 111 12333
Q ss_pred cccccceeee
Q 043655 237 GCRALEDLTL 246 (512)
Q Consensus 237 ~cp~Le~L~l 246 (512)
.|++|+.+.+
T Consensus 79 ~~~~l~~i~~ 88 (129)
T PF13306_consen 79 NCTNLKNIDI 88 (129)
T ss_dssp T-TTECEEEE
T ss_pred cccccccccc
Confidence 4666665555
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=44.34 E-value=12 Score=20.36 Aligned_cols=13 Identities=38% Similarity=0.340 Sum_probs=6.4
Q ss_pred ccccceeeecccc
Q 043655 238 CRALEDLTLDNCI 250 (512)
Q Consensus 238 cp~Le~L~l~~c~ 250 (512)
|++|++|+|.+|.
T Consensus 1 ~~~L~~L~l~~n~ 13 (24)
T PF13516_consen 1 NPNLETLDLSNNQ 13 (24)
T ss_dssp -TT-SEEE-TSSB
T ss_pred CCCCCEEEccCCc
Confidence 4566666666664
No 85
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=43.96 E-value=38 Score=24.50 Aligned_cols=39 Identities=13% Similarity=0.288 Sum_probs=28.8
Q ss_pred cccceEEEEeecc-CCcHHHHHHHHhhCCCCcEEEEEeec
Q 043655 367 TNLKSLELHTGFN-KHNVQGLACLFRSSPSIHTLILKIIN 405 (512)
Q Consensus 367 ~~L~~L~L~~~~~-~~~~~~l~~~L~~cp~Le~L~l~~~~ 405 (512)
.+|+.+.+..... ..+...+..||+++|.||++.|....
T Consensus 5 ~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~ 44 (72)
T smart00579 5 SSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVET 44 (72)
T ss_pred heEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeec
Confidence 4678888865321 24456788999999999999998743
No 86
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=39.10 E-value=19 Score=19.24 Aligned_cols=10 Identities=20% Similarity=0.375 Sum_probs=5.8
Q ss_pred CccEEEEecc
Q 043655 164 SLRVFKLRSR 173 (512)
Q Consensus 164 ~L~~L~L~~~ 173 (512)
+|++|+|++|
T Consensus 1 ~L~~Ldls~n 10 (22)
T PF00560_consen 1 NLEYLDLSGN 10 (22)
T ss_dssp TESEEEETSS
T ss_pred CccEEECCCC
Confidence 3566666664
No 87
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=31.13 E-value=12 Score=35.84 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=31.3
Q ss_pred cCCCChHHHHHHHccCCchhhHHHhhhcHhHHHh
Q 043655 26 ISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSL 59 (512)
Q Consensus 26 is~LPdevl~~Ils~L~~~d~~rts~lSrrWr~l 59 (512)
+..+|+++++.|++|+..+++.+++.+|+|-..+
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~ 41 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKEL 41 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhh
Confidence 4579999999999999999999999999998864
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.89 E-value=21 Score=36.90 Aligned_cols=78 Identities=19% Similarity=0.087 Sum_probs=43.0
Q ss_pred CCccEEEEecccCccccCCCccccccCcccceEEeeeE--EeeCccchhhhhcCCCCcccceecccccc----------c
Q 043655 163 DSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLV--ILFNQPCLLDLFTDSSFPHLKKLDLDACY----------G 230 (512)
Q Consensus 163 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~--~~~~~~~l~~l~~~~~~p~L~~L~L~~~~----------~ 230 (512)
+.+..++|++|. ...+..........|+|++|+|+++ .+..+..+..+ ..+-||+|.+.+++ -
T Consensus 218 p~i~sl~lsnNr-L~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~----k~l~Leel~l~GNPlc~tf~~~s~y 292 (585)
T KOG3763|consen 218 PEILSLSLSNNR-LYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL----KGLPLEELVLEGNPLCTTFSDRSEY 292 (585)
T ss_pred cceeeeecccch-hhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh----cCCCHHHeeecCCccccchhhhHHH
Confidence 456666666642 1233332234456777777777776 44443333332 45667777777754 1
Q ss_pred cchhcccccccceee
Q 043655 231 LKQLKVGCRALEDLT 245 (512)
Q Consensus 231 l~~l~~~cp~Le~L~ 245 (512)
+..+....|+|..|+
T Consensus 293 v~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 293 VSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHhcchheeec
Confidence 334555567665554
No 89
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=27.25 E-value=32 Score=32.10 Aligned_cols=48 Identities=21% Similarity=0.357 Sum_probs=37.1
Q ss_pred CccCCCChHHHHHHHccCC-chhhHHHhhhcHhH------HHhhccCCcccccCC
Q 043655 24 DRISDLPDAILHHILFLLP-IKSIAQTCTLSKRW------RSLWCSFPDLDFNTI 71 (512)
Q Consensus 24 D~is~LPdevl~~Ils~L~-~~d~~rts~lSrrW------r~lw~~~~~l~~~~~ 71 (512)
=.+.+||.|++..|+-+|+ -+|++.++.+-.-- +.+|+.+-.++|...
T Consensus 200 ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~er 254 (332)
T KOG3926|consen 200 LTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNER 254 (332)
T ss_pred CCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3589999999999999998 68998888663222 246888877777654
No 90
>COG4829 CatC1 Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.00 E-value=20 Score=26.87 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=25.7
Q ss_pred CChHHHHHHHccCCchhhHHHhhhcHh--HHHhhccCC
Q 043655 29 LPDAILHHILFLLPIKSIAQTCTLSKR--WRSLWCSFP 64 (512)
Q Consensus 29 LPdevl~~Ils~L~~~d~~rts~lSrr--Wr~lw~~~~ 64 (512)
+||+.=.....++-.+|..+..-|-++ |+++|+...
T Consensus 11 ~PdsMdad~~er~~A~Eka~s~~Lq~~G~~~~lWR~~G 48 (98)
T COG4829 11 VPDSMDADAVERVRAREKARSRELQAQGKLLRLWRRPG 48 (98)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhccc
Confidence 455555555666778888888877654 999999654
No 91
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=21.56 E-value=41 Score=18.56 Aligned_cols=14 Identities=36% Similarity=0.223 Sum_probs=8.4
Q ss_pred cccceEEeeeEEee
Q 043655 190 RSLHTLSLSLVILF 203 (512)
Q Consensus 190 ~~L~~L~L~~~~~~ 203 (512)
++|++|+|.++.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666554
No 92
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=21.56 E-value=41 Score=18.56 Aligned_cols=14 Identities=36% Similarity=0.223 Sum_probs=8.4
Q ss_pred cccceEEeeeEEee
Q 043655 190 RSLHTLSLSLVILF 203 (512)
Q Consensus 190 ~~L~~L~L~~~~~~ 203 (512)
++|++|+|.++.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666554
No 93
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=21.10 E-value=1.5e+02 Score=24.29 Aligned_cols=32 Identities=13% Similarity=0.235 Sum_probs=21.6
Q ss_pred ccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655 368 NLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILK 402 (512)
Q Consensus 368 ~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~ 402 (512)
|=+..+|..- .+...+..+++.||+|+-+.+-
T Consensus 18 nE~~VHlAFR---PSN~Dif~Lv~~CP~lk~iqiP 49 (131)
T PF08004_consen 18 NEEIVHLAFR---PSNKDIFSLVERCPNLKAIQIP 49 (131)
T ss_pred CceEEEEEec---CcchHHHHHHHhCCCCeEEeCC
Confidence 4444444432 2335788899999999998773
No 94
>KOG3445 consensus Mitochondrial/chloroplast ribosomal protein 36a [Translation, ribosomal structure and biogenesis]
Probab=20.90 E-value=1.2e+02 Score=25.19 Aligned_cols=43 Identities=12% Similarity=0.042 Sum_probs=26.3
Q ss_pred CccccceEEEecccCccchHHHHHHHHHhccCCccCCCceeee
Q 043655 469 GKALQEMTLCTGHCNYRDSLRRQKVRSQMMGFSWASSNARIAF 511 (512)
Q Consensus 469 a~~L~~m~i~~~~~~~~~~~~~~~~~~~l~~~~~as~~~~v~~ 511 (512)
.-.|+++++.+.+-++......+=+..+|..+.+.+|.+.|.+
T Consensus 20 v~ql~rit~sfCnwggSSrGmR~Fle~~L~~~a~enP~v~i~v 62 (145)
T KOG3445|consen 20 VWQLRRITVSFCNWGGSSRGMREFLESELPDLARENPGVVIYV 62 (145)
T ss_pred hheeeEEEEEEecCCCccHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence 3456777777765544444444444556777777777766654
Done!