Query 043655
Match_columns 512
No_of_seqs 196 out of 2055
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 11:55:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 99.9 4.9E-23 1.7E-27 218.8 7.8 215 23-269 3-244 (594)
2 3ogk_B Coronatine-insensitive 99.9 1.5E-22 5.2E-27 214.9 10.6 282 27-347 14-326 (592)
3 2ast_B S-phase kinase-associat 99.7 3.8E-19 1.3E-23 174.9 3.8 278 23-397 6-299 (336)
4 3ogk_B Coronatine-insensitive 99.3 5.2E-12 1.8E-16 133.7 7.6 273 111-402 111-411 (592)
5 4fmz_A Internalin; leucine ric 99.2 3.3E-11 1.1E-15 118.5 11.9 227 138-403 44-274 (347)
6 2p1m_B Transport inhibitor res 99.2 6.6E-12 2.2E-16 132.9 4.3 130 138-271 66-222 (594)
7 4fmz_A Internalin; leucine ric 99.1 5.9E-11 2E-15 116.7 7.2 232 138-405 88-322 (347)
8 1o6v_A Internalin A; bacterial 99.1 2.4E-10 8.2E-15 117.2 10.8 34 441-480 308-341 (466)
9 4fcg_A Uncharacterized protein 99.1 2.6E-10 8.8E-15 111.2 8.7 217 137-402 80-309 (328)
10 1o6v_A Internalin A; bacterial 99.1 6.2E-10 2.1E-14 114.1 11.9 98 138-250 90-188 (466)
11 1z7x_W Ribonuclease inhibitor; 99.1 3.8E-11 1.3E-15 122.9 2.6 233 164-404 86-351 (461)
12 3zyi_A Leucine-rich repeat-con 99.0 1.7E-10 5.8E-15 117.8 5.6 209 161-391 97-316 (452)
13 2z80_A TOLL-like receptor 2, v 99.0 2.1E-09 7.1E-14 105.9 13.2 235 150-403 41-286 (353)
14 3zyj_A Leucine-rich repeat-con 99.0 2E-10 6.7E-15 116.9 4.9 210 161-392 86-306 (440)
15 3t6q_A CD180 antigen; protein- 99.0 7.2E-10 2.5E-14 117.5 9.1 231 152-403 266-509 (606)
16 3v47_A TOLL-like receptor 5B a 99.0 4.2E-10 1.4E-14 114.9 5.5 103 285-402 275-379 (455)
17 2ca6_A RAN GTPase-activating p 98.9 3E-11 1E-15 120.7 -4.0 183 216-403 92-312 (386)
18 3o6n_A APL1; leucine-rich repe 98.9 1.6E-09 5.3E-14 108.4 8.1 234 138-403 69-327 (390)
19 3oja_B Anopheles plasmodium-re 98.9 1.7E-09 5.8E-14 114.4 7.9 212 161-402 97-332 (597)
20 1z7x_W Ribonuclease inhibitor; 98.9 4.2E-11 1.4E-15 122.6 -4.3 255 139-403 4-293 (461)
21 2z80_A TOLL-like receptor 2, v 98.9 2.9E-09 9.9E-14 104.9 9.0 207 160-378 73-312 (353)
22 3o53_A Protein LRIM1, AGAP0063 98.9 6.2E-10 2.1E-14 108.0 3.7 244 127-402 21-270 (317)
23 2z63_A TOLL-like receptor 4, v 98.9 9.2E-10 3.1E-14 115.8 5.3 223 154-403 296-527 (570)
24 1h6u_A Internalin H; cell adhe 98.9 1.1E-09 3.9E-14 105.6 5.2 139 161-315 39-181 (308)
25 3zyi_A Leucine-rich repeat-con 98.9 2.6E-09 8.8E-14 109.0 8.1 235 145-404 59-300 (452)
26 1fs1_A SKP2 F-BOX, cyclin A/CD 98.9 1.5E-09 5E-14 74.6 3.9 37 23-59 6-42 (53)
27 3oja_A Leucine-rich immune mol 98.9 6.1E-10 2.1E-14 114.6 2.7 232 139-402 35-270 (487)
28 3zyj_A Leucine-rich repeat-con 98.9 2.8E-09 9.5E-14 108.4 7.6 235 145-404 48-289 (440)
29 2z66_A Variable lymphocyte rec 98.9 4.8E-10 1.6E-14 108.1 1.8 60 188-249 50-111 (306)
30 3vq2_A TLR4, TOLL-like recepto 98.9 6.8E-10 2.3E-14 117.7 3.0 235 138-402 285-529 (606)
31 2z63_A TOLL-like receptor 4, v 98.8 3.9E-09 1.3E-13 110.9 8.6 221 155-403 274-503 (570)
32 3rgz_A Protein brassinosteroid 98.8 1.1E-09 3.7E-14 119.5 4.5 60 338-403 293-352 (768)
33 2id5_A Lingo-1, leucine rich r 98.8 1E-09 3.5E-14 112.8 3.9 240 139-403 81-329 (477)
34 1h6u_A Internalin H; cell adhe 98.8 5.4E-09 1.9E-13 100.8 8.6 162 138-317 41-205 (308)
35 3vq2_A TLR4, TOLL-like recepto 98.8 1.3E-09 4.5E-14 115.5 4.1 217 159-404 281-507 (606)
36 1xku_A Decorin; proteoglycan, 98.8 3.5E-09 1.2E-13 103.3 6.4 189 161-376 74-272 (330)
37 3o6n_A APL1; leucine-rich repe 98.8 3.2E-09 1.1E-13 106.1 6.3 282 138-480 45-349 (390)
38 1ogq_A PGIP-2, polygalacturona 98.8 5.4E-09 1.9E-13 101.1 7.6 125 139-270 51-184 (313)
39 2ast_B S-phase kinase-associat 98.8 1.8E-10 6.3E-15 112.6 -2.9 129 138-271 93-233 (336)
40 2z81_A CD282 antigen, TOLL-lik 98.8 1.2E-08 4.1E-13 106.7 10.7 235 151-404 16-261 (549)
41 3bz5_A Internalin-J, INLJ; leu 98.8 9.7E-09 3.3E-13 104.7 9.2 138 188-351 104-245 (457)
42 2id5_A Lingo-1, leucine rich r 98.8 2E-08 6.8E-13 103.1 11.1 221 159-403 52-281 (477)
43 3t6q_A CD180 antigen; protein- 98.8 2.7E-09 9.4E-14 113.1 4.0 244 138-402 278-531 (606)
44 1ozn_A Reticulon 4 receptor; N 98.8 1.3E-08 4.5E-13 96.9 8.3 117 145-270 16-139 (285)
45 1ozn_A Reticulon 4 receptor; N 98.8 7E-09 2.4E-13 98.8 6.1 195 189-403 31-234 (285)
46 1xku_A Decorin; proteoglycan, 98.7 3.7E-09 1.3E-13 103.0 3.8 243 138-403 76-328 (330)
47 3v47_A TOLL-like receptor 5B a 98.7 5.5E-09 1.9E-13 106.6 5.1 128 138-272 30-166 (455)
48 2z66_A Variable lymphocyte rec 98.7 4E-09 1.4E-13 101.6 3.9 236 139-394 29-277 (306)
49 3oja_B Anopheles plasmodium-re 98.7 6.8E-09 2.3E-13 109.8 5.6 238 138-404 51-311 (597)
50 3rgz_A Protein brassinosteroid 98.7 3E-09 1E-13 115.9 3.0 191 188-403 176-377 (768)
51 1ogq_A PGIP-2, polygalacturona 98.7 6E-09 2.1E-13 100.8 4.8 126 138-270 76-207 (313)
52 3j0a_A TOLL-like receptor 5; m 98.7 1.6E-08 5.3E-13 111.5 8.4 70 156-229 90-159 (844)
53 3bz5_A Internalin-J, INLJ; leu 98.7 4.5E-09 1.5E-13 107.2 3.5 217 138-402 42-262 (457)
54 3j0a_A TOLL-like receptor 5; m 98.7 3.3E-08 1.1E-12 108.9 9.3 82 161-250 46-134 (844)
55 4fcg_A Uncharacterized protein 98.7 7.5E-08 2.6E-12 93.7 10.6 220 112-351 81-313 (328)
56 3oja_A Leucine-rich immune mol 98.7 8.4E-09 2.9E-13 106.1 3.6 211 162-403 33-246 (487)
57 4ecn_A Leucine-rich repeat pro 98.6 3.8E-09 1.3E-13 115.4 0.7 238 139-403 549-815 (876)
58 2ft3_A Biglycan; proteoglycan, 98.6 7.8E-09 2.7E-13 100.9 2.8 214 163-403 54-273 (332)
59 3goz_A Leucine-rich repeat-con 98.6 3.6E-09 1.2E-13 104.6 0.2 208 188-401 48-288 (362)
60 4ecn_A Leucine-rich repeat pro 98.6 3.1E-08 1.1E-12 108.2 7.5 93 155-250 481-584 (876)
61 3o53_A Protein LRIM1, AGAP0063 98.6 8.5E-09 2.9E-13 99.9 2.5 103 284-403 119-223 (317)
62 4eco_A Uncharacterized protein 98.6 2.6E-08 8.8E-13 106.1 5.9 93 155-250 239-341 (636)
63 4eco_A Uncharacterized protein 98.6 1.2E-08 4.2E-13 108.5 3.2 240 138-403 305-575 (636)
64 3rfs_A Internalin B, repeat mo 98.6 3E-08 1E-12 93.7 4.9 186 162-402 40-230 (272)
65 2z7x_B TOLL-like receptor 1, v 98.6 4.4E-07 1.5E-11 94.1 13.6 246 138-404 45-384 (520)
66 1h6t_A Internalin B; cell adhe 98.6 6.4E-08 2.2E-12 92.4 6.7 78 161-250 44-123 (291)
67 1ziw_A TOLL-like receptor 3; i 98.6 2.5E-08 8.4E-13 107.3 3.9 37 161-200 327-363 (680)
68 2ca6_A RAN GTPase-activating p 98.6 4.8E-09 1.7E-13 104.6 -1.6 210 188-403 30-283 (386)
69 3g06_A SSPH2 (leucine-rich rep 98.5 1.3E-07 4.5E-12 99.6 8.6 171 189-403 100-270 (622)
70 3goz_A Leucine-rich repeat-con 98.5 1.4E-08 4.7E-13 100.4 0.7 209 189-404 21-263 (362)
71 2o6q_A Variable lymphocyte rec 98.5 1.4E-07 4.9E-12 88.9 7.6 183 152-377 28-215 (270)
72 2ft3_A Biglycan; proteoglycan, 98.5 8.4E-08 2.9E-12 93.5 6.0 237 138-403 54-303 (332)
73 3g06_A SSPH2 (leucine-rich rep 98.5 1.3E-07 4.3E-12 99.8 7.6 213 138-403 81-293 (622)
74 2z81_A CD282 antigen, TOLL-lik 98.5 5.1E-08 1.8E-12 101.9 4.4 206 161-391 308-524 (549)
75 3a79_B TLR6, VLRB.59, TOLL-lik 98.5 1.8E-06 6.2E-11 90.4 15.9 63 336-403 350-412 (562)
76 1wwl_A Monocyte differentiatio 98.5 9.8E-09 3.4E-13 99.2 -2.1 13 390-402 292-304 (312)
77 2z62_A TOLL-like receptor 4, v 98.5 9.2E-08 3.2E-12 90.5 4.6 97 145-250 12-111 (276)
78 1m9s_A Internalin B; cell inva 98.5 5.6E-08 1.9E-12 102.3 3.4 164 161-350 41-208 (605)
79 1ziw_A TOLL-like receptor 3; i 98.4 1E-07 3.4E-12 102.5 4.6 71 155-229 288-364 (680)
80 4ezg_A Putative uncharacterize 98.4 1E-07 3.5E-12 85.3 3.8 78 161-250 42-123 (197)
81 1p9a_G Platelet glycoprotein I 98.4 3.7E-07 1.3E-11 87.0 7.8 99 284-395 123-225 (290)
82 4glp_A Monocyte differentiatio 98.4 5.3E-07 1.8E-11 86.9 8.9 152 114-271 66-235 (310)
83 4ezg_A Putative uncharacterize 98.4 2.5E-07 8.6E-12 82.7 5.6 103 138-254 44-151 (197)
84 3a79_B TLR6, VLRB.59, TOLL-lik 98.4 6.2E-07 2.1E-11 94.0 9.3 83 284-376 352-437 (562)
85 1h6t_A Internalin B; cell adhe 98.4 7.5E-07 2.6E-11 85.0 9.0 98 138-250 46-145 (291)
86 2z7x_B TOLL-like receptor 1, v 98.4 6.8E-07 2.3E-11 92.7 9.0 243 111-377 219-478 (520)
87 2o6q_A Variable lymphocyte rec 98.3 2.7E-07 9.4E-12 87.0 4.4 192 164-403 17-214 (270)
88 1wwl_A Monocyte differentiatio 98.3 7.1E-07 2.4E-11 86.0 7.0 195 137-351 94-308 (312)
89 3rfs_A Internalin B, repeat mo 98.3 2E-07 6.7E-12 88.1 2.9 173 187-403 38-214 (272)
90 1m9s_A Internalin B; cell inva 98.3 5E-07 1.7E-11 95.0 6.1 163 138-319 43-209 (605)
91 4glp_A Monocyte differentiatio 98.3 7.9E-07 2.7E-11 85.6 7.0 169 138-314 117-301 (310)
92 2z62_A TOLL-like receptor 4, v 98.3 2.1E-07 7.1E-12 88.1 2.1 196 189-403 27-233 (276)
93 4ay9_X Follicle-stimulating ho 98.2 8.4E-07 2.9E-11 87.0 5.0 230 145-403 14-255 (350)
94 1xeu_A Internalin C; cellular 98.2 2.9E-06 9.8E-11 79.6 8.1 39 161-204 39-77 (263)
95 1p9a_G Platelet glycoprotein I 98.2 1.1E-06 3.6E-11 83.9 4.3 177 152-350 22-206 (290)
96 2xwt_C Thyrotropin receptor; s 98.1 1.7E-06 5.7E-11 79.8 5.0 187 163-376 31-235 (239)
97 3e4g_A ATP synthase subunit S, 98.1 8.2E-07 2.8E-11 76.8 2.3 45 163-211 61-106 (176)
98 1jl5_A Outer protein YOPM; leu 98.1 6.6E-06 2.2E-10 83.6 9.4 115 188-317 151-267 (454)
99 3m19_A Variable lymphocyte rec 98.1 2.4E-06 8.3E-11 79.4 5.7 54 335-392 151-207 (251)
100 1jl5_A Outer protein YOPM; leu 98.1 1.6E-06 5.5E-11 88.2 4.8 134 138-296 153-288 (454)
101 3m19_A Variable lymphocyte rec 98.1 6.2E-06 2.1E-10 76.6 8.2 96 146-250 20-118 (251)
102 2ra8_A Uncharacterized protein 98.1 1.4E-06 4.6E-11 85.6 2.9 155 230-393 163-331 (362)
103 3e4g_A ATP synthase subunit S, 98.0 9.9E-07 3.4E-11 76.3 1.6 82 190-275 61-154 (176)
104 2xwt_C Thyrotropin receptor; s 98.0 4E-06 1.4E-10 77.2 5.4 77 190-270 31-115 (239)
105 1xeu_A Internalin C; cellular 98.0 9.7E-06 3.3E-10 75.9 7.9 97 138-250 41-139 (263)
106 3cvr_A Invasion plasmid antige 98.0 7.5E-06 2.5E-10 85.3 7.2 180 138-377 59-240 (571)
107 2e31_A FBS1, F-box only protei 98.0 2.8E-06 9.6E-11 79.6 3.5 36 24-59 49-85 (297)
108 3cvr_A Invasion plasmid antige 97.9 2.1E-05 7.3E-10 81.8 9.6 175 162-405 58-241 (571)
109 4g8a_A TOLL-like receptor 4; l 97.9 2.1E-05 7.3E-10 83.2 9.7 95 145-250 36-135 (635)
110 2ell_A Acidic leucine-rich nuc 97.9 1E-05 3.6E-10 69.9 5.0 104 138-250 24-131 (168)
111 3l2o_B F-box only protein 4; s 97.9 3E-06 1E-10 78.3 1.6 38 26-63 5-48 (312)
112 2ell_A Acidic leucine-rich nuc 97.9 8.2E-06 2.8E-10 70.6 4.1 109 285-404 49-157 (168)
113 2je0_A Acidic leucine-rich nuc 97.8 4.5E-06 1.5E-10 70.7 1.9 107 284-401 41-147 (149)
114 4g8a_A TOLL-like receptor 4; l 97.8 9.4E-06 3.2E-10 86.0 4.1 150 284-471 444-598 (635)
115 2je0_A Acidic leucine-rich nuc 97.8 1.1E-05 3.6E-10 68.3 3.3 79 163-250 17-99 (149)
116 2o6s_A Variable lymphocyte rec 97.7 2.8E-05 9.5E-10 69.8 5.3 92 150-250 17-111 (208)
117 2ra8_A Uncharacterized protein 97.7 1.1E-05 3.7E-10 79.1 1.8 63 284-350 251-318 (362)
118 2v70_A SLIT-2, SLIT homolog 2 97.7 5.7E-05 2E-09 68.5 6.5 145 145-319 16-165 (220)
119 2v9t_B SLIT homolog 2 protein 97.6 8.8E-05 3E-09 67.3 7.1 91 149-250 20-115 (220)
120 3un9_A NLR family member X1; l 97.6 5.3E-06 1.8E-10 81.9 -1.4 74 330-403 174-248 (372)
121 3e6j_A Variable lymphocyte rec 97.6 9.6E-05 3.3E-09 67.5 6.4 94 148-250 27-123 (229)
122 3v7d_B Cell division control p 97.5 2.7E-05 9.2E-10 79.0 1.9 38 22-59 11-48 (464)
123 2xot_A Amphoterin-induced prot 97.5 0.00017 5.9E-09 70.7 7.3 141 149-298 27-176 (361)
124 3sb4_A Hypothetical leucine ri 97.4 9.5E-05 3.2E-09 71.6 4.8 33 217-249 100-134 (329)
125 1a9n_A U2A', U2A'; complex (nu 97.4 2.9E-05 9.9E-10 67.7 0.9 81 160-250 16-99 (176)
126 2o6s_A Variable lymphocyte rec 97.4 0.0001 3.6E-09 66.0 4.6 122 139-270 29-158 (208)
127 1dce_A Protein (RAB geranylger 97.4 2.3E-06 8E-11 89.3 -7.8 192 188-400 347-566 (567)
128 1a9n_A U2A', U2A'; complex (nu 97.4 4.4E-05 1.5E-09 66.6 1.4 132 236-404 16-150 (176)
129 2v70_A SLIT-2, SLIT homolog 2 97.3 0.00019 6.5E-09 65.0 4.7 145 166-350 14-164 (220)
130 2ovr_B FBW7, F-BOX/WD repeat p 97.3 0.00013 4.5E-09 73.5 3.8 42 22-63 15-62 (445)
131 3e6j_A Variable lymphocyte rec 97.2 0.0005 1.7E-08 62.6 6.8 128 189-350 39-170 (229)
132 1p22_A F-BOX/WD-repeat protein 97.2 8.2E-05 2.8E-09 74.8 1.6 41 23-63 8-58 (435)
133 1ds9_A Outer arm dynein; leuci 97.2 7.8E-06 2.7E-10 72.9 -5.5 44 155-203 40-83 (198)
134 1w8a_A SLIT protein; signaling 97.2 0.00054 1.9E-08 60.5 6.4 95 148-250 16-113 (192)
135 1dce_A Protein (RAB geranylger 97.1 0.00068 2.3E-08 70.6 6.8 99 139-250 442-544 (567)
136 2v9t_B SLIT homolog 2 protein 97.0 0.0009 3.1E-08 60.5 6.1 103 139-250 33-139 (220)
137 1ds9_A Outer arm dynein; leuci 96.9 0.00016 5.4E-09 64.3 0.0 14 284-297 139-152 (198)
138 2wfh_A SLIT homolog 2 protein 96.9 0.0019 6.5E-08 57.0 6.9 96 145-250 15-113 (193)
139 3un9_A NLR family member X1; l 96.8 2.1E-05 7.3E-10 77.5 -6.8 86 162-250 100-194 (372)
140 2o6r_A Variable lymphocyte rec 96.8 0.0023 8E-08 55.4 7.0 91 151-250 18-111 (177)
141 3sb4_A Hypothetical leucine ri 96.7 0.0013 4.6E-08 63.4 5.2 100 284-401 225-328 (329)
142 4ay9_X Follicle-stimulating ho 96.6 0.0025 8.6E-08 62.0 6.6 210 138-376 30-255 (350)
143 2wfh_A SLIT homolog 2 protein 96.6 0.0036 1.2E-07 55.2 7.0 104 138-250 31-137 (193)
144 2xot_A Amphoterin-induced prot 96.6 0.0023 7.8E-08 62.6 5.8 123 139-271 40-174 (361)
145 3g39_A Variable lymphocyte rec 96.5 0.0045 1.5E-07 53.3 6.9 95 147-250 16-113 (170)
146 1w8a_A SLIT protein; signaling 96.5 0.0033 1.1E-07 55.3 6.0 103 139-250 30-137 (192)
147 2r9u_A Variable lymphocyte rec 96.5 0.0051 1.7E-07 53.2 6.9 94 148-250 20-116 (174)
148 2o6r_A Variable lymphocyte rec 96.2 0.0088 3E-07 51.6 6.7 104 138-250 28-135 (177)
149 4b8c_D Glucose-repressible alc 96.1 0.0022 7.6E-08 68.9 3.0 101 139-250 225-327 (727)
150 4fdw_A Leucine rich hypothetic 96.1 0.018 6.3E-07 57.0 9.3 107 285-404 248-355 (401)
151 1io0_A Tropomodulin; LRR prote 96.1 0.0024 8.1E-08 56.0 2.5 96 304-403 62-160 (185)
152 4fdw_A Leucine rich hypothetic 95.8 0.021 7E-07 56.6 8.0 123 235-376 222-354 (401)
153 4b8c_D Glucose-repressible alc 95.7 0.0031 1E-07 67.8 2.0 106 156-271 217-327 (727)
154 2ifg_A High affinity nerve gro 95.0 0.022 7.4E-07 55.1 5.1 91 151-250 20-114 (347)
155 3g39_A Variable lymphocyte rec 94.3 0.039 1.3E-06 47.2 4.6 100 285-396 30-134 (170)
156 4fs7_A Uncharacterized protein 94.2 0.053 1.8E-06 53.5 5.8 99 284-402 275-374 (394)
157 1io0_A Tropomodulin; LRR prote 94.0 0.049 1.7E-06 47.4 4.6 131 329-480 26-161 (185)
158 3rw6_A Nuclear RNA export fact 93.3 0.03 1E-06 51.8 2.1 38 188-229 194-231 (267)
159 2r9u_A Variable lymphocyte rec 93.1 0.053 1.8E-06 46.6 3.2 98 285-394 33-135 (174)
160 3rw6_A Nuclear RNA export fact 88.7 0.16 5.5E-06 46.9 2.0 60 188-250 168-231 (267)
161 2ifg_A High affinity nerve gro 88.0 0.25 8.4E-06 47.5 2.9 79 187-270 28-113 (347)
162 4gt6_A Cell surface protein; l 84.8 0.69 2.4E-05 45.3 4.3 119 161-293 263-386 (394)
163 4gt6_A Cell surface protein; l 77.5 1.5 5.1E-05 42.8 3.7 104 155-268 279-386 (394)
164 1pgv_A TMD-1, tropomodulin TMD 76.1 0.76 2.6E-05 40.1 1.0 95 305-403 68-166 (197)
165 4fs7_A Uncharacterized protein 70.3 2.8 9.7E-05 40.8 3.6 79 161-249 295-376 (394)
166 4h09_A Hypothetical leucine ri 61.5 9.5 0.00032 36.6 5.5 78 160-247 237-318 (379)
167 1pgv_A TMD-1, tropomodulin TMD 50.6 7.7 0.00026 33.6 2.4 96 304-402 38-134 (197)
168 4h09_A Hypothetical leucine ri 32.8 57 0.0019 31.0 5.7 79 161-249 215-296 (379)
169 3rfe_A Platelet glycoprotein I 31.5 39 0.0013 26.7 3.6 9 164-172 32-40 (130)
170 3rfe_A Platelet glycoprotein I 24.4 48 0.0017 26.1 2.9 51 340-394 32-84 (130)
171 1s3a_A NADH-ubiquinone oxidore 22.6 32 0.0011 26.0 1.4 40 472-511 19-58 (102)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=4.9e-23 Score=218.78 Aligned_cols=215 Identities=17% Similarity=0.227 Sum_probs=126.9
Q ss_pred CCccCCCChHHHHHHHccCC-chhhHHHhhhcHhHHHhhcc-CCcccccCCCccccccCcccCcCCCCCcccchhhHhHH
Q 043655 23 IDRISDLPDAILHHILFLLP-IKSIAQTCTLSKRWRSLWCS-FPDLDFNTINPLAISSGKYNTSSGAKRPRFISLKEMDL 100 (512)
Q Consensus 23 ~D~is~LPdevl~~Ils~L~-~~d~~rts~lSrrWr~lw~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (512)
.|+|+.|||||+.+||+||| ++|+++++.|||||+++... ...+++..... ..
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~-------------------------~~ 57 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYA-------------------------VS 57 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTS-------------------------SC
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccc-------------------------cC
Confidence 48999999999999999999 99999999999999987211 11222221100 00
Q ss_pred HHHHHhhhcccCceeeeEEeeccCc-----------chhhHHHHHHHh--cCCceeEEEeccCCCCCCCccee-ccCCcc
Q 043655 101 ISQVLSIRDKHSYIRVLRFRAHLSF-----------SCLNGLIRRAIR--HNVEELDIEVATDDYFNLPRCVI-TSDSLR 166 (512)
Q Consensus 101 v~~~l~~~~~~~~i~~l~l~~~~~~-----------~~~~~wi~~~~~--~~v~~L~l~~~~~~~~~lp~~l~-~~~~L~ 166 (512)
...++. +.+.++.+.+...... ..+..|+..... +++++|++..+.-.. ..+..+. .+++|+
T Consensus 58 ~~~~~~---~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~~~~~l~~~~~~L~ 133 (594)
T 2p1m_B 58 PATVIR---RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTD-DCLELIAKSFKNFK 133 (594)
T ss_dssp HHHHHH---HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH-HHHHHHHHHCTTCC
T ss_pred HHHHHh---hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcH-HHHHHHHHhCCCCc
Confidence 011221 2355788877753211 345678877764 688998887432111 1111222 578999
Q ss_pred EEEEecccCccccCCCccccccCcccceEEeeeEEeeCcc--chhhhhcCCCCcccceecccccc------ccchhcccc
Q 043655 167 VFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQP--CLLDLFTDSSFPHLKKLDLDACY------GLKQLKVGC 238 (512)
Q Consensus 167 ~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~--~l~~l~~~~~~p~L~~L~L~~~~------~l~~l~~~c 238 (512)
+|+|.+|. .+...........+++|++|+|++|.+.+.. .+..+. ..|++|++|+|.++. .+..+...|
T Consensus 134 ~L~L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~ 210 (594)
T 2p1m_B 134 VLVLSSCE-GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP--DTYTSLVSLNISCLASEVSFSALERLVTRC 210 (594)
T ss_dssp EEEEESCE-EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC--TTCCCCCEEECTTCCSCCCHHHHHHHHHHC
T ss_pred EEeCCCcC-CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh--hcCCcCcEEEecccCCcCCHHHHHHHHHhC
Confidence 99998842 1111000112336899999999988876532 233332 378899999998874 355666678
Q ss_pred cccceeeeccccCcccee---EeccCcceEEEee
Q 043655 239 RALEDLTLDNCIQLCGLD---IFGTKLERLRVAS 269 (512)
Q Consensus 239 p~Le~L~l~~c~~l~~~~---v~~~~L~~L~l~~ 269 (512)
|+|+.|++.+|..+..+. ...++|+.|.+..
T Consensus 211 ~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244 (594)
T ss_dssp TTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSB
T ss_pred CCCcEEecCCCCcHHHHHHHHhcCCcceEccccc
Confidence 999999998885433211 1125566665443
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=1.5e-22 Score=214.92 Aligned_cols=282 Identities=13% Similarity=0.127 Sum_probs=158.5
Q ss_pred CCCChHHHHHHHccC-CchhhHHHhhhcHhHHHhhccCC-cccccCCCccccccCcccCcCCCCCcccchhhHhHHHHHH
Q 043655 27 SDLPDAILHHILFLL-PIKSIAQTCTLSKRWRSLWCSFP-DLDFNTINPLAISSGKYNTSSGAKRPRFISLKEMDLISQV 104 (512)
Q Consensus 27 s~LPdevl~~Ils~L-~~~d~~rts~lSrrWr~lw~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 104 (512)
++||||++.+||+|| +++|++++++|||||++++.... .+.+.. .+..++..+
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~-------------------------~~~~~~~~~ 68 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMAL-------------------------CYTATPDRL 68 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESC-------------------------GGGSCHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEee-------------------------ccccChHHH
Confidence 489999999999999 79999999999999999854433 122111 111223333
Q ss_pred HhhhcccCceeeeEEeeccC-----------cchhhHHHHHHHh--cCCceeEEEeccCCCCCCCcceec-cCC-ccEEE
Q 043655 105 LSIRDKHSYIRVLRFRAHLS-----------FSCLNGLIRRAIR--HNVEELDIEVATDDYFNLPRCVIT-SDS-LRVFK 169 (512)
Q Consensus 105 l~~~~~~~~i~~l~l~~~~~-----------~~~~~~wi~~~~~--~~v~~L~l~~~~~~~~~lp~~l~~-~~~-L~~L~ 169 (512)
+.. .+.++.+.+..... ......|+..... +++++|++....-.. ..+..+.. +++ |++|+
T Consensus 69 ~~~---~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~-~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 69 SRR---FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSD-LDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHH---CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH-HHHHHHHHHHGGGCCEEE
T ss_pred HHh---CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecH-HHHHHHHHhccccCcEEE
Confidence 332 34588888865211 1234567777664 688998887432110 01111222 444 99999
Q ss_pred EecccCccccCCCccccccCcccceEEeeeEEeeCccc--hhhhhcCCCCcccceecccccc-------ccchhcccccc
Q 043655 170 LRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPC--LLDLFTDSSFPHLKKLDLDACY-------GLKQLKVGCRA 240 (512)
Q Consensus 170 L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~--l~~l~~~~~~p~L~~L~L~~~~-------~l~~l~~~cp~ 240 (512)
|.+|. .............+++|++|+|++|.+.+.+. +..+. ..+|+|++|+|.++. .+..+...||+
T Consensus 145 L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~--~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~ 221 (592)
T 3ogk_B 145 LDKCS-GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA--QHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221 (592)
T ss_dssp EESCE-EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH--HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTT
T ss_pred CcCCC-CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH--hcCCCccEEEeeccCCCccCHHHHHHHHhhCCC
Confidence 98853 11111111123368999999999998865421 33333 368999999997654 34556678899
Q ss_pred cceeeeccccCcc--ceeEeccCcceEEEeeeccccC--CCceEEEeCCCcceEEeeccccCCC-ccccCcccceeeEEe
Q 043655 241 LEDLTLDNCIQLC--GLDIFGTKLERLRVASCFDAYC--DKSWVKIDASKLKVLNWEYNAITAS-SSLENLASLHEASVG 315 (512)
Q Consensus 241 Le~L~l~~c~~l~--~~~v~~~~L~~L~l~~c~~~~~--~~~~~~i~~p~L~~L~~~~~~~~~~-~~l~~~~~L~~l~l~ 315 (512)
|+.|++.+|.... ..-...++|++|.+..+..... .........++|+.+.+.+...... ..+..+++|+++++.
T Consensus 222 L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls 301 (592)
T 3ogk_B 222 LVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLL 301 (592)
T ss_dssp CCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEET
T ss_pred CcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecC
Confidence 9999999875322 1111236788888765321100 0001111345566665544321111 223445566666665
Q ss_pred eEEcccchhHHHHhHHHHHhhcCCcccEeeec
Q 043655 316 FILLHEDLTSAKLQSVSNFLSGLSHARSLTLE 347 (512)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~ 347 (512)
.+.. ++ ..+..++..+++|+.|++.
T Consensus 302 ~~~l-~~------~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 302 YALL-ET------EDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp TCCC-CH------HHHHHHHTTCTTCCEEEEE
T ss_pred CCcC-CH------HHHHHHHHhCcCCCEEecc
Confidence 4431 11 1123345555555555554
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=3.8e-19 Score=174.90 Aligned_cols=278 Identities=17% Similarity=0.202 Sum_probs=155.8
Q ss_pred CCccCCCChHHHHHHHccCCchhhHHHhhhcHhHHHhhcc---CCcccccCCCccccccCcccCcCCCCCcccchhhHhH
Q 043655 23 IDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSLWCS---FPDLDFNTINPLAISSGKYNTSSGAKRPRFISLKEMD 99 (512)
Q Consensus 23 ~D~is~LPdevl~~Ils~L~~~d~~rts~lSrrWr~lw~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (512)
...|++||||++.+||++|+.+|+++++.|||+|+++... ...+++..... . ..
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~----------------------~-~~ 62 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNL----------------------H-PD 62 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBC----------------------C-HH
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccC----------------------C-HH
Confidence 3568999999999999999999999999999999998532 11122221100 0 01
Q ss_pred HHHHHHhhhcccCceeeeEEeeccCcchhhHHHHHHHhcCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCcccc
Q 043655 100 LISQVLSIRDKHSYIRVLRFRAHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRL 179 (512)
Q Consensus 100 ~v~~~l~~~~~~~~i~~l~l~~~~~~~~~~~wi~~~~~~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~ 179 (512)
. +.....++++.+++.... ....+..++.+++|++|+|++|. +..
T Consensus 63 ~-------------------------------~~~~~~~~l~~L~l~~n~--l~~~~~~~~~~~~L~~L~L~~~~--l~~ 107 (336)
T 2ast_B 63 V-------------------------------TGRLLSQGVIAFRCPRSF--MDQPLAEHFSPFRVQHMDLSNSV--IEV 107 (336)
T ss_dssp H-------------------------------HHHHHHTTCSEEECTTCE--ECSCCCSCCCCBCCCEEECTTCE--ECH
T ss_pred H-------------------------------HHhhhhccceEEEcCCcc--ccccchhhccCCCCCEEEccCCC--cCH
Confidence 1 112222344444443211 11223335578889999998842 221
Q ss_pred CCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc-----ccchhcccccccceeeeccccCccc
Q 043655 180 PPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY-----GLKQLKVGCRALEDLTLDNCIQLCG 254 (512)
Q Consensus 180 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~-----~l~~l~~~cp~Le~L~l~~c~~l~~ 254 (512)
.........+++|++|+|+++.+.+. .... + ..+|+|++|+|.+|. ++..++..|++|++|++.+|..+..
T Consensus 108 ~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~-l--~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 108 STLHGILSQCSKLQNLSLEGLRLSDP-IVNT-L--AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 183 (336)
T ss_dssp HHHHHHHTTBCCCSEEECTTCBCCHH-HHHH-H--TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred HHHHHHHhhCCCCCEEeCcCcccCHH-HHHH-H--hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh
Confidence 10011234688999999988876532 1222 2 358899999998885 2445567788899999888854443
Q ss_pred eeE-----ecc-CcceEEEeeecc-ccC-CCceEEEeCCCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHH
Q 043655 255 LDI-----FGT-KLERLRVASCFD-AYC-DKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSA 326 (512)
Q Consensus 255 ~~v-----~~~-~L~~L~l~~c~~-~~~-~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~ 326 (512)
..+ ..+ +|++|.+.+|.. ..+ ... ..+.++++|+.++++.+...++..
T Consensus 184 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~----------------------~~~~~~~~L~~L~l~~~~~l~~~~-- 239 (336)
T 2ast_B 184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLS----------------------TLVRRCPNLVHLDLSDSVMLKNDC-- 239 (336)
T ss_dssp HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH----------------------HHHHHCTTCSEEECTTCTTCCGGG--
T ss_pred HHHHHHHHhcccCCCEEEeCCCcccCCHHHHH----------------------HHHhhCCCCCEEeCCCCCcCCHHH--
Confidence 211 124 666666666531 100 000 112234444444444332111111
Q ss_pred HHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCc
Q 043655 327 KLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIH 397 (512)
Q Consensus 327 ~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le 397 (512)
...+..+++|+.|+++.+. .+.... ......+++|++|+|..+ ....++..+.+.+|.|+
T Consensus 240 -----~~~l~~l~~L~~L~l~~~~--~~~~~~-~~~l~~~~~L~~L~l~~~---i~~~~~~~l~~~l~~L~ 299 (336)
T 2ast_B 240 -----FQEFFQLNYLQHLSLSRCY--DIIPET-LLELGEIPTLKTLQVFGI---VPDGTLQLLKEALPHLQ 299 (336)
T ss_dssp -----GGGGGGCTTCCEEECTTCT--TCCGGG-GGGGGGCTTCCEEECTTS---SCTTCHHHHHHHSTTSE
T ss_pred -----HHHHhCCCCCCEeeCCCCC--CCCHHH-HHHHhcCCCCCEEeccCc---cCHHHHHHHHhhCcceE
Confidence 1124556778888887664 111111 123446888999988765 22234555667788776
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.25 E-value=5.2e-12 Score=133.67 Aligned_cols=273 Identities=12% Similarity=0.115 Sum_probs=151.6
Q ss_pred cCceeeeEEeeccCcchhhHHHHHHHhcCCceeEEEeccC-CCCCCCcceeccCCccEEEEecccCccccCCC---cccc
Q 043655 111 HSYIRVLRFRAHLSFSCLNGLIRRAIRHNVEELDIEVATD-DYFNLPRCVITSDSLRVFKLRSRYRGFRLPPS---SVVA 186 (512)
Q Consensus 111 ~~~i~~l~l~~~~~~~~~~~wi~~~~~~~v~~L~l~~~~~-~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~---~~~~ 186 (512)
.+.++.+.+....-.+..-.|+......++++|++..+.. ....++.....|++|++|+|++| .+.-... ....
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~--~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES--SFSEKDGKWLHELA 188 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTC--EEECCCSHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccc--cccCcchhHHHHHH
Confidence 3568888887642223344566665556799999985431 11112222236899999999985 2211110 0123
Q ss_pred ccCcccceEEeeeEEee--CccchhhhhcCCCCcccceecccccc--ccchhcccccccceeeeccccCccc-----ee-
Q 043655 187 GGFRSLHTLSLSLVILF--NQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCG-----LD- 256 (512)
Q Consensus 187 ~~~~~L~~L~L~~~~~~--~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~-----~~- 256 (512)
..+++|++|+|+++.+. +...+..++. +||+|++|+|.+|. ++...+..+++|++|.+..+..... ..
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIAR--NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHH--HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHh--hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 46899999999988886 2345555553 79999999999986 5667778899999999986432210 01
Q ss_pred EeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC---ccccCcccceeeEEeeEEcccchhHHHHhHHHH
Q 043655 257 IFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS---SSLENLASLHEASVGFILLHEDLTSAKLQSVSN 333 (512)
Q Consensus 257 v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~---~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 333 (512)
...++|++|.+.++... ....+...+++|++|+++++.+... ..+..+++|+.+++..+ . ....+..
T Consensus 267 ~~~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~--~------~~~~l~~ 336 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPN--EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV--I------GDRGLEV 336 (592)
T ss_dssp CCCTTCCEEEETTCCTT--TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG--G------HHHHHHH
T ss_pred hccccccccCccccchh--HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc--c------CHHHHHH
Confidence 11256666666553211 1111112456777777776553221 11356677777766511 1 1122444
Q ss_pred HhhcCCcccEeeecc-----------hhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655 334 FLSGLSHARSLTLES-----------PCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILK 402 (512)
Q Consensus 334 ~l~~l~~l~~L~l~~-----------~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~ 402 (512)
+...+++|+.|++.. ..+.. .........+++|++|.+.. ...+..++..+.+.||+|+.|.+.
T Consensus 337 ~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~---~~~~~l~~~~~~L~~L~l~~--~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQ---RGLIALAQGCQELEYMAVYV--SDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHHCTTCCEEEEECCCCSSTTSSTTCCCCH---HHHHHHHHHCTTCSEEEEEE--SCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred HHHhCCCCCEEEeecCccccccccccCccCH---HHHHHHHhhCccCeEEEeec--CCccHHHHHHHHhhCCCCcEEEEe
Confidence 556666777777762 11100 00001112355666666622 222334445555556666666664
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.24 E-value=3.3e-11 Score=118.53 Aligned_cols=227 Identities=18% Similarity=0.182 Sum_probs=135.5
Q ss_pred cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF 217 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 217 (512)
..++.|++.... ...+|. +..+++|++|+|++|.. ..+++ ...+++|++|+|+++.+.+-+.+ ..+
T Consensus 44 ~~L~~L~l~~~~--i~~~~~-~~~~~~L~~L~l~~n~i-~~~~~----~~~l~~L~~L~L~~n~i~~~~~~------~~l 109 (347)
T 4fmz_A 44 ESITKLVVAGEK--VASIQG-IEYLTNLEYLNLNGNQI-TDISP----LSNLVKLTNLYIGTNKITDISAL------QNL 109 (347)
T ss_dssp TTCSEEECCSSC--CCCCTT-GGGCTTCCEEECCSSCC-CCCGG----GTTCTTCCEEECCSSCCCCCGGG------TTC
T ss_pred ccccEEEEeCCc--cccchh-hhhcCCccEEEccCCcc-ccchh----hhcCCcCCEEEccCCcccCchHH------cCC
Confidence 566666665332 223333 45678888888887421 11221 34678888888888776653322 467
Q ss_pred cccceecccccc--ccchhcccccccceeeeccccCccceeEe--ccCcceEEEeeeccccCCCceEEEeCCCcceEEee
Q 043655 218 PHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLDIF--GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWE 293 (512)
Q Consensus 218 p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~v~--~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~ 293 (512)
++|++|++.++. .+.. +..+++|+.|++.+|.....+... .++|+.|.+.+|....... ....++|+.|.++
T Consensus 110 ~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLN 185 (347)
T ss_dssp TTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECT
T ss_pred CcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh---hccCCCCCEEEcc
Confidence 888888887775 3333 557788888888888654433221 2677888877764332111 1146778888887
Q ss_pred ccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEE
Q 043655 294 YNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLE 373 (512)
Q Consensus 294 ~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 373 (512)
++.+.....+..+++|+.+++..+...+.. .+..+++++.|+++.+.+.... ....+++|++|+
T Consensus 186 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~----------~~~~~~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~ 249 (347)
T 4fmz_A 186 YNQIEDISPLASLTSLHYFTAYVNQITDIT----------PVANMTRLNSLKIGNNKITDLS------PLANLSQLTWLE 249 (347)
T ss_dssp TSCCCCCGGGGGCTTCCEEECCSSCCCCCG----------GGGGCTTCCEEECCSSCCCCCG------GGTTCTTCCEEE
T ss_pred CCcccccccccCCCccceeecccCCCCCCc----------hhhcCCcCCEEEccCCccCCCc------chhcCCCCCEEE
Confidence 776655544667777777777655432211 1566777788877766543222 134667777777
Q ss_pred EEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655 374 LHTGFNKHNVQGLACLFRSSPSIHTLILKI 403 (512)
Q Consensus 374 L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~ 403 (512)
|..+.-. +. ..+..+|+|+.|++..
T Consensus 250 l~~n~l~-~~----~~~~~l~~L~~L~l~~ 274 (347)
T 4fmz_A 250 IGTNQIS-DI----NAVKDLTKLKMLNVGS 274 (347)
T ss_dssp CCSSCCC-CC----GGGTTCTTCCEEECCS
T ss_pred CCCCccC-CC----hhHhcCCCcCEEEccC
Confidence 7654211 11 2356777777777754
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.19 E-value=6.6e-12 Score=132.92 Aligned_cols=130 Identities=19% Similarity=0.216 Sum_probs=85.3
Q ss_pred cCCceeEEEeccCC-CCCC-Cc-----------c-eeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEee
Q 043655 138 HNVEELDIEVATDD-YFNL-PR-----------C-VITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILF 203 (512)
Q Consensus 138 ~~v~~L~l~~~~~~-~~~l-p~-----------~-l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 203 (512)
.+++.|++..+... ...+ |. . ...+++|++|+|++|. +...........+++|++|+|.+|...
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~--~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV--VTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB--CCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE--EcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 67899998864311 1111 11 1 1257899999999842 221111112235899999999998554
Q ss_pred CccchhhhhcCCCCcccceecccccc-------ccchhcccccccceeeecccc-Ccc-----ceeEeccCcceEEEeee
Q 043655 204 NQPCLLDLFTDSSFPHLKKLDLDACY-------GLKQLKVGCRALEDLTLDNCI-QLC-----GLDIFGTKLERLRVASC 270 (512)
Q Consensus 204 ~~~~l~~l~~~~~~p~L~~L~L~~~~-------~l~~l~~~cp~Le~L~l~~c~-~l~-----~~~v~~~~L~~L~l~~c 270 (512)
++.++..+.. +||+|++|+|.+|. .+..+...|++|+.|++.+|. .+. .+....++|++|.+.+|
T Consensus 144 ~~~~l~~~~~--~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 144 STDGLAAIAA--TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EHHHHHHHHH--HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CHHHHHHHHH--hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 4445555553 79999999999886 245566689999999999986 221 11122489999999987
Q ss_pred c
Q 043655 271 F 271 (512)
Q Consensus 271 ~ 271 (512)
.
T Consensus 222 ~ 222 (594)
T 2p1m_B 222 V 222 (594)
T ss_dssp S
T ss_pred C
Confidence 3
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.12 E-value=5.9e-11 Score=116.70 Aligned_cols=232 Identities=19% Similarity=0.146 Sum_probs=151.6
Q ss_pred cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF 217 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 217 (512)
..++.|++.... ...+| .+..+++|++|+|++|... .+++ ...+++|++|+++++..... +..+ ..+
T Consensus 88 ~~L~~L~L~~n~--i~~~~-~~~~l~~L~~L~l~~n~i~-~~~~----~~~l~~L~~L~l~~n~~~~~--~~~~---~~l 154 (347)
T 4fmz_A 88 VKLTNLYIGTNK--ITDIS-ALQNLTNLRELYLNEDNIS-DISP----LANLTKMYSLNLGANHNLSD--LSPL---SNM 154 (347)
T ss_dssp TTCCEEECCSSC--CCCCG-GGTTCTTCSEEECTTSCCC-CCGG----GTTCTTCCEEECTTCTTCCC--CGGG---TTC
T ss_pred CcCCEEEccCCc--ccCch-HHcCCCcCCEEECcCCccc-Cchh----hccCCceeEEECCCCCCccc--ccch---hhC
Confidence 567777776432 22333 3557889999999884211 1221 34688999999988744332 1111 478
Q ss_pred cccceecccccc--ccchhcccccccceeeeccccCccceeEe-ccCcceEEEeeeccccCCCceEEEeCCCcceEEeec
Q 043655 218 PHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLDIF-GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEY 294 (512)
Q Consensus 218 p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~v~-~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~ 294 (512)
++|+.|++.++. .+.. +..+++|+.|++.+|.......+. .++|+.|.+.++....... ....++|++|.+++
T Consensus 155 ~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 155 TGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGN 230 (347)
T ss_dssp TTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCS
T ss_pred CCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch---hhcCCcCCEEEccC
Confidence 999999998886 3333 567899999999988532211122 2788888888764432111 12568899999988
Q ss_pred cccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEE
Q 043655 295 NAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLEL 374 (512)
Q Consensus 295 ~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L 374 (512)
+.+.....+..+++|+.++++.+...+- ..+..+++++.|+++.+.+..+. ....+++|++|+|
T Consensus 231 n~l~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~L 294 (347)
T 4fmz_A 231 NKITDLSPLANLSQLTWLEIGTNQISDI----------NAVKDLTKLKMLNVGSNQISDIS------VLNNLSQLNSLFL 294 (347)
T ss_dssp SCCCCCGGGTTCTTCCEEECCSSCCCCC----------GGGTTCTTCCEEECCSSCCCCCG------GGGGCTTCSEEEC
T ss_pred CccCCCcchhcCCCCCEEECCCCccCCC----------hhHhcCCCcCEEEccCCccCCCh------hhcCCCCCCEEEC
Confidence 8776655578889999998886644321 23677888999999877644331 3456788999988
Q ss_pred EeeccCCcHHHHHHHHhhCCCCcEEEEEeec
Q 043655 375 HTGFNKHNVQGLACLFRSSPSIHTLILKIIN 405 (512)
Q Consensus 375 ~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~~ 405 (512)
..+.-.. .....+..+|+|+.|++....
T Consensus 295 ~~n~l~~---~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 295 NNNQLGN---EDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp CSSCCCG---GGHHHHHTCTTCSEEECCSSS
T ss_pred cCCcCCC---cChhHhhccccCCEEEccCCc
Confidence 7642221 234566788999999887543
No 8
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.10 E-value=2.4e-10 Score=117.19 Aligned_cols=34 Identities=15% Similarity=0.081 Sum_probs=21.5
Q ss_pred hcCccEEEEeeeccchhHHHHHHHHHhcCccccceEEEec
Q 043655 441 LNNLNVVEIHGFLECENEVSLAKFLLKHGKALQEMTLCTG 480 (512)
Q Consensus 441 ~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~L~~m~i~~~ 480 (512)
+.+|+.+.+.+-.-.... . +...+.|+.+.+...
T Consensus 308 l~~L~~L~L~~n~l~~~~-~-----~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 308 LKNLTYLTLYFNNISDIS-P-----VSSLTKLQRLFFYNN 341 (466)
T ss_dssp CTTCSEEECCSSCCSCCG-G-----GGGCTTCCEEECCSS
T ss_pred CCCCCEEECcCCcCCCch-h-----hccCccCCEeECCCC
Confidence 577888888764322211 1 467788888888754
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.06 E-value=2.6e-10 Score=111.25 Aligned_cols=217 Identities=19% Similarity=0.232 Sum_probs=114.5
Q ss_pred hcCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655 137 RHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS 216 (512)
Q Consensus 137 ~~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 216 (512)
..+++.|++.... ...+|..++.+++|++|+|++|... .+|. ....+++|++|+|+++.+..- ..-+ ..
T Consensus 80 ~~~l~~L~L~~n~--l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~---~~~~l~~L~~L~Ls~n~l~~l---p~~l--~~ 148 (328)
T 4fcg_A 80 QPGRVALELRSVP--LPQFPDQAFRLSHLQHMTIDAAGLM-ELPD---TMQQFAGLETLTLARNPLRAL---PASI--AS 148 (328)
T ss_dssp STTCCEEEEESSC--CSSCCSCGGGGTTCSEEEEESSCCC-CCCS---CGGGGTTCSEEEEESCCCCCC---CGGG--GG
T ss_pred ccceeEEEccCCC--chhcChhhhhCCCCCEEECCCCCcc-chhH---HHhccCCCCEEECCCCccccC---cHHH--hc
Confidence 3577777776433 3478888888999999999986433 3443 135789999999998877632 1112 25
Q ss_pred Ccccceeccccccccchh------------cccccccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeC
Q 043655 217 FPHLKKLDLDACYGLKQL------------KVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDA 284 (512)
Q Consensus 217 ~p~L~~L~L~~~~~l~~l------------~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~ 284 (512)
+++|+.|+|.+|..+..+ +.++++|+.|++.+|.. ..+.- . ....
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~---------------------~-l~~l 205 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPA---------------------S-IANL 205 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCG---------------------G-GGGC
T ss_pred CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchH---------------------h-hcCC
Confidence 677777777776522221 12355666666655531 11100 0 0023
Q ss_pred CCcceEEeeccccCCC-ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccccc
Q 043655 285 SKLKVLNWEYNAITAS-SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNL 363 (512)
Q Consensus 285 p~L~~L~~~~~~~~~~-~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~ 363 (512)
++|++|.++++.+... ..++.+++|+.++++.+...+. +...+..+++|+.|+++.+..... .+...
T Consensus 206 ~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~--------~p~~~~~l~~L~~L~L~~n~~~~~----~p~~~ 273 (328)
T 4fcg_A 206 QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN--------YPPIFGGRAPLKRLILKDCSNLLT----LPLDI 273 (328)
T ss_dssp TTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCB--------CCCCTTCCCCCCEEECTTCTTCCB----CCTTG
T ss_pred CCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhh--------hHHHhcCCCCCCEEECCCCCchhh----cchhh
Confidence 3444444444433221 1234455555555544322111 011244566667777665432110 01133
Q ss_pred ccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655 364 HTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILK 402 (512)
Q Consensus 364 ~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~ 402 (512)
..+++|++|+|..+... ..++..+..+|+|+.+.+.
T Consensus 274 ~~l~~L~~L~L~~n~~~---~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 274 HRLTQLEKLDLRGCVNL---SRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp GGCTTCCEEECTTCTTC---CCCCGGGGGSCTTCEEECC
T ss_pred hcCCCCCEEeCCCCCch---hhccHHHhhccCceEEeCC
Confidence 45667777777653211 1233445667777777654
No 10
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.06 E-value=6.2e-10 Score=114.10 Aligned_cols=98 Identities=16% Similarity=0.206 Sum_probs=51.2
Q ss_pred cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF 217 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 217 (512)
..++.|++.... ...++. +..+++|++|+|++|... .+++ ...+++|++|+|+++.+.+...+ ..+
T Consensus 90 ~~L~~L~l~~n~--l~~~~~-~~~l~~L~~L~L~~n~l~-~~~~----~~~l~~L~~L~l~~n~l~~~~~~------~~l 155 (466)
T 1o6v_A 90 TKLVDILMNNNQ--IADITP-LANLTNLTGLTLFNNQIT-DIDP----LKNLTNLNRLELSSNTISDISAL------SGL 155 (466)
T ss_dssp TTCCEEECCSSC--CCCCGG-GTTCTTCCEEECCSSCCC-CCGG----GTTCTTCSEEEEEEEEECCCGGG------TTC
T ss_pred ccCCEEECCCCc--cccChh-hcCCCCCCEEECCCCCCC-CChH----HcCCCCCCEEECCCCccCCChhh------ccC
Confidence 456666554322 223333 446777888888774211 1211 34677888888888777654322 245
Q ss_pred cccceecccccc-ccchhcccccccceeeecccc
Q 043655 218 PHLKKLDLDACY-GLKQLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 218 p~L~~L~L~~~~-~l~~l~~~cp~Le~L~l~~c~ 250 (512)
++|+.|++.+.. .+.. +..+++|+.|++.+|.
T Consensus 156 ~~L~~L~l~~~~~~~~~-~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 156 TSLQQLSFGNQVTDLKP-LANLTTLERLDISSNK 188 (466)
T ss_dssp TTCSEEEEEESCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CcccEeecCCcccCchh-hccCCCCCEEECcCCc
Confidence 566665554322 1111 3445555555555553
No 11
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.05 E-value=3.8e-11 Score=122.90 Aligned_cols=233 Identities=15% Similarity=0.098 Sum_probs=137.8
Q ss_pred CccEEEEecccCccccCC---CccccccCcccceEEeeeEEeeCc--cchhhhhcCCCCcccceecccccc-------cc
Q 043655 164 SLRVFKLRSRYRGFRLPP---SSVVAGGFRSLHTLSLSLVILFNQ--PCLLDLFTDSSFPHLKKLDLDACY-------GL 231 (512)
Q Consensus 164 ~L~~L~L~~~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~~~~--~~l~~l~~~~~~p~L~~L~L~~~~-------~l 231 (512)
+|++|+|++|. +.... .......+++|++|+|+++.+.+. ..+...+. ...++|++|+|.+|. .+
T Consensus 86 ~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 86 KIQKLSLQNCC--LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL-DPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp CCCEEECTTSC--CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT-STTCCCCEEECTTSCCBGGGHHHH
T ss_pred ceeEEEccCCC--CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh-cCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888742 22100 001134578888888888776542 11222111 245678888888875 12
Q ss_pred chhcccccccceeeeccccCccceeEe---------ccCcceEEEeeeccccCCC---ceEEEeCCCcceEEeeccccCC
Q 043655 232 KQLKVGCRALEDLTLDNCIQLCGLDIF---------GTKLERLRVASCFDAYCDK---SWVKIDASKLKVLNWEYNAITA 299 (512)
Q Consensus 232 ~~l~~~cp~Le~L~l~~c~~l~~~~v~---------~~~L~~L~l~~c~~~~~~~---~~~~i~~p~L~~L~~~~~~~~~ 299 (512)
...+..+++|++|++.+|. +....+. .++|++|.+.+|.....+. .......++|++|+++++.+..
T Consensus 163 ~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 3445567888888888876 3221111 2488889888875432110 0011146889999988876532
Q ss_pred C-------ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccc-ccccccccce
Q 043655 300 S-------SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFT-NLHTFTNLKS 371 (512)
Q Consensus 300 ~-------~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~-~~~~~~~L~~ 371 (512)
. .....+++|+.++++.+...+. ....+...+..+++++.|+++.+.+.......... .....++|++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 317 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAK----GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHH----HHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHH----HHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcccee
Confidence 1 1123578899988887643322 12335566778899999999877543221111101 1123358999
Q ss_pred EEEEeecc-CCcHHHHHHHHhhCCCCcEEEEEee
Q 043655 372 LELHTGFN-KHNVQGLACLFRSSPSIHTLILKII 404 (512)
Q Consensus 372 L~L~~~~~-~~~~~~l~~~L~~cp~Le~L~l~~~ 404 (512)
|+|..+.- ......+...+..+|+|++|++...
T Consensus 318 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence 98876432 2334567788899999999998653
No 12
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.02 E-value=1.7e-10 Score=117.83 Aligned_cols=209 Identities=21% Similarity=0.126 Sum_probs=96.2
Q ss_pred ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccc-hhccc
Q 043655 161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLK-QLKVG 237 (512)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~-~l~~~ 237 (512)
.+++|++|+|++|... .+++.. ..++++|++|+|+++.+..-.. ..+ ..+++|+.|+|.++. .+. ..+..
T Consensus 97 ~l~~L~~L~Ls~n~i~-~~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~ 169 (452)
T 3zyi_A 97 HLHHLEVLQLGRNSIR-QIEVGA--FNGLASLNTLELFDNWLTVIPS--GAF--EYLSKLRELWLRNNPIESIPSYAFNR 169 (452)
T ss_dssp TCTTCCEEECCSSCCC-EECTTT--TTTCTTCCEEECCSSCCSBCCT--TTS--SSCTTCCEEECCSCCCCEECTTTTTT
T ss_pred CCCCCCEEECCCCccC-CcChhh--ccCcccCCEEECCCCcCCccCh--hhh--cccCCCCEEECCCCCcceeCHhHHhc
Confidence 4556666666653211 122111 2345666666666555443110 001 245666666666554 111 23345
Q ss_pred ccccceeeeccccCccceeEe----ccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccccCccccee
Q 043655 238 CRALEDLTLDNCIQLCGLDIF----GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLENLASLHE 311 (512)
Q Consensus 238 cp~Le~L~l~~c~~l~~~~v~----~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~~~~~L~~ 311 (512)
+++|+.|++.+|..+..+... .++|+.|.+.++...... . ....++|+.|+++++.+... ..+.++++|+.
T Consensus 170 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 246 (452)
T 3zyi_A 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--N-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246 (452)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--C-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCE
T ss_pred CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc--c-ccccccccEEECcCCcCcccCcccccCccCCCE
Confidence 566666666665544433221 145666666554322110 0 11345666666665544322 23455666666
Q ss_pred eEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeecc--CCcHHHHHHH
Q 043655 312 ASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFN--KHNVQGLACL 389 (512)
Q Consensus 312 l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~--~~~~~~l~~~ 389 (512)
++++.+...... ...+..+++|+.|+|+.+.+..+.. .....+++|+.|+|..+.- .++..++..+
T Consensus 247 L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~ 314 (452)
T 3zyi_A 247 LWVMNSQVSLIE--------RNAFDGLASLVELNLAHNNLSSLPH----DLFTPLRYLVELHLHHNPWNCDCDILWLAWW 314 (452)
T ss_dssp EECTTSCCCEEC--------TTTTTTCTTCCEEECCSSCCSCCCT----TSSTTCTTCCEEECCSSCEECSTTTHHHHHH
T ss_pred EEeCCCcCceEC--------HHHhcCCCCCCEEECCCCcCCccCh----HHhccccCCCEEEccCCCcCCCCCchHHHHH
Confidence 666543322110 1124556666666666554432221 1233456666666654321 2334444444
Q ss_pred Hh
Q 043655 390 FR 391 (512)
Q Consensus 390 L~ 391 (512)
++
T Consensus 315 l~ 316 (452)
T 3zyi_A 315 LR 316 (452)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 13
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.01 E-value=2.1e-09 Score=105.95 Aligned_cols=235 Identities=16% Similarity=0.093 Sum_probs=145.8
Q ss_pred CCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc
Q 043655 150 DDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY 229 (512)
Q Consensus 150 ~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~ 229 (512)
.....+|..+. ++|++|+|+++... .+++.. ...+++|++|+|+++.+.+.. ...+ ..+++|++|+|.++.
T Consensus 41 ~~l~~iP~~~~--~~L~~L~l~~n~i~-~~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~--~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 41 GSLNSIPSGLT--EAVKSLDLSNNRIT-YISNSD--LQRCVNLQALVLTSNGINTIE--EDSF--SSLGSLEHLDLSYNY 111 (353)
T ss_dssp TTCSSCCTTCC--TTCCEEECTTSCCC-EECTTT--TTTCTTCCEEECTTSCCCEEC--TTTT--TTCTTCCEEECCSSC
T ss_pred CCccccccccc--ccCcEEECCCCcCc-ccCHHH--hccCCCCCEEECCCCccCccC--Hhhc--CCCCCCCEEECCCCc
Confidence 34456666554 47899999885221 233221 346889999999887765421 1111 368899999998875
Q ss_pred --ccc-hhcccccccceeeeccccCccceeE-----eccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC-
Q 043655 230 --GLK-QLKVGCRALEDLTLDNCIQLCGLDI-----FGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS- 300 (512)
Q Consensus 230 --~l~-~l~~~cp~Le~L~l~~c~~l~~~~v-----~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~- 300 (512)
.+. ..+..+++|++|++.++.. ..+.. ..++|++|.+.++..............++|+.|.++++.+...
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred CCcCCHhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence 332 2356788999999988853 22221 1378999999887321100000001357889999988765432
Q ss_pred -ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeecc
Q 043655 301 -SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFN 379 (512)
Q Consensus 301 -~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 379 (512)
..+.++++|++++++.+.... ....++..+++++.|+++...+........ ........++.+.|....-
T Consensus 191 ~~~l~~l~~L~~L~l~~n~l~~--------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQHIL--------LLEIFVDVTSSVECLELRDTDLDTFHFSEL-STGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp TTTTTTCSEEEEEEEECSCSTT--------HHHHHHHHTTTEEEEEEESCBCTTCCCC-------CCCCCCEEEEESCBC
T ss_pred HHHHhccccCCeecCCCCcccc--------chhhhhhhcccccEEECCCCcccccccccc-ccccccchhhccccccccc
Confidence 456788999999998664311 112345668999999999877554332211 1223456788888876422
Q ss_pred C-CcHHHHHHHHhhCCCCcEEEEEe
Q 043655 380 K-HNVQGLACLFRSSPSIHTLILKI 403 (512)
Q Consensus 380 ~-~~~~~l~~~L~~cp~Le~L~l~~ 403 (512)
. .....++..+..+|+|+.|++..
T Consensus 262 ~~~~l~~l~~~l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 262 TDESLFQVMKLLNQISGLLELEFSR 286 (353)
T ss_dssp CHHHHHHHHHHHHTCTTCCEEECCS
T ss_pred cCcchhhhHHHHhcccCCCEEECCC
Confidence 2 23445777889999999999964
No 14
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.99 E-value=2e-10 Score=116.93 Aligned_cols=210 Identities=18% Similarity=0.140 Sum_probs=101.0
Q ss_pred ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccc-hhccc
Q 043655 161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLK-QLKVG 237 (512)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~-~l~~~ 237 (512)
.+++|++|+|++|... .+++. ...++++|++|+|+++.+..-.. ..+ ..+++|+.|+|.++. .+. ..+..
T Consensus 86 ~l~~L~~L~Ls~n~i~-~i~~~--~~~~l~~L~~L~L~~n~l~~~~~--~~~--~~l~~L~~L~L~~N~i~~~~~~~~~~ 158 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIR-TIEIG--AFNGLANLNTLELFDNRLTTIPN--GAF--VYLSKLKELWLRNNPIESIPSYAFNR 158 (440)
T ss_dssp SCSSCCEEECCSSCCC-EECGG--GGTTCSSCCEEECCSSCCSSCCT--TTS--CSCSSCCEEECCSCCCCEECTTTTTT
T ss_pred CCCCCCEEECCCCcCC-ccChh--hccCCccCCEEECCCCcCCeeCH--hHh--hccccCceeeCCCCcccccCHHHhhh
Confidence 4566666666653211 11111 12346666666666665543210 011 245666666666654 111 23445
Q ss_pred ccccceeeeccccCccceeEe----ccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccccCccccee
Q 043655 238 CRALEDLTLDNCIQLCGLDIF----GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLENLASLHE 311 (512)
Q Consensus 238 cp~Le~L~l~~c~~l~~~~v~----~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~~~~~L~~ 311 (512)
+++|+.|++.+|..+..+... .++|+.|.+.++...... . ....++|+.|+++++.+... ..+.++++|+.
T Consensus 159 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 235 (440)
T 3zyj_A 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--N-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235 (440)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--C-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--c-cCCCcccCEEECCCCccCccChhhhccCccCCE
Confidence 666666666665544433221 156666666655332110 0 11345666666666544321 23456666666
Q ss_pred eEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeec--cCCcHHHHHHH
Q 043655 312 ASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGF--NKHNVQGLACL 389 (512)
Q Consensus 312 l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~~~l~~~ 389 (512)
++++.+...... ...+..+++|+.|+|+.+.+..+.. .....+++|+.|+|..+. ..++..++..+
T Consensus 236 L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~ 303 (440)
T 3zyj_A 236 LWMIQSQIQVIE--------RNAFDNLQSLVEINLAHNNLTLLPH----DLFTPLHHLERIHLHHNPWNCNCDILWLSWW 303 (440)
T ss_dssp EECTTCCCCEEC--------TTSSTTCTTCCEEECTTSCCCCCCT----TTTSSCTTCCEEECCSSCEECSSTTHHHHHH
T ss_pred EECCCCceeEEC--------hhhhcCCCCCCEEECCCCCCCccCh----hHhccccCCCEEEcCCCCccCCCCchHHHHH
Confidence 666544322111 1224556666666666655432221 133455667777665432 12344555555
Q ss_pred Hhh
Q 043655 390 FRS 392 (512)
Q Consensus 390 L~~ 392 (512)
++.
T Consensus 304 ~~~ 306 (440)
T 3zyj_A 304 IKD 306 (440)
T ss_dssp HHT
T ss_pred HHh
Confidence 554
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.98 E-value=7.2e-10 Score=117.55 Aligned_cols=231 Identities=18% Similarity=0.154 Sum_probs=127.2
Q ss_pred CCCCCcc-eeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccc
Q 043655 152 YFNLPRC-VITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYG 230 (512)
Q Consensus 152 ~~~lp~~-l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~ 230 (512)
...++.. +..+++|++|+|++|... .+|.. ...+++|++|+|+++.+.+... ..+ ..+|+|++|++.++.-
T Consensus 266 l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~---l~~l~~L~~L~l~~n~l~~~~~--~~~--~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 266 FFNISSNTFHCFSGLQELDLTATHLS-ELPSG---LVGLSTLKKLVLSANKFENLCQ--ISA--SNFPSLTHLSIKGNTK 337 (606)
T ss_dssp CSSCCTTTTTTCTTCSEEECTTSCCS-CCCSS---CCSCTTCCEEECTTCCCSBGGG--GCG--GGCTTCSEEECCSCSS
T ss_pred cCccCHHHhccccCCCEEeccCCccC-CCChh---hcccccCCEEECccCCcCcCch--hhh--hccCcCCEEECCCCCc
Confidence 3445544 335788888888875322 33332 3467888888888877764211 111 3578888888887752
Q ss_pred c----chhcccccccceeeeccccCcccee----E-eccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC-
Q 043655 231 L----KQLKVGCRALEDLTLDNCIQLCGLD----I-FGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS- 300 (512)
Q Consensus 231 l----~~l~~~cp~Le~L~l~~c~~l~~~~----v-~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~- 300 (512)
. ...+..+++|+.|++.+|....... + ..++|+.|.+.++........ .....++|++|+++++.+...
T Consensus 338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~ 416 (606)
T 3t6q_A 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE-AFKECPQLELLDLAFTRLKVKD 416 (606)
T ss_dssp CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT-TTTTCTTCSEEECTTCCEECCT
T ss_pred ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH-HhcCCccCCeEECCCCcCCCcc
Confidence 1 2235567888888888775322110 1 126788888877643211000 001356777887777654322
Q ss_pred --ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeec
Q 043655 301 --SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGF 378 (512)
Q Consensus 301 --~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 378 (512)
..+.++++|+.++++.+..... ....+..+++|+.|+++.+.+....... ......+++|+.|+|+.+.
T Consensus 417 ~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 417 AQSPFQNLHLLKVLNLSHSLLDIS--------SEQLFDGLPALQHLNLQGNHFPKGNIQK-TNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp TCCTTTTCTTCCEEECTTCCCBTT--------CTTTTTTCTTCCEEECTTCBCGGGEECS-SCGGGGCTTCCEEECTTSC
T ss_pred cchhhhCcccCCEEECCCCccCCc--------CHHHHhCCCCCCEEECCCCCCCcccccc-chhhccCCCccEEECCCCc
Confidence 2256777777777765543221 1123556777777777766543211110 1234456677777775432
Q ss_pred cCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655 379 NKHNVQGLACLFRSSPSIHTLILKI 403 (512)
Q Consensus 379 ~~~~~~~l~~~L~~cp~Le~L~l~~ 403 (512)
-.. ..+..+..+|+|+.|++..
T Consensus 488 l~~---~~~~~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 488 LSS---IDQHAFTSLKMMNHVDLSH 509 (606)
T ss_dssp CCE---ECTTTTTTCTTCCEEECCS
T ss_pred cCc---cChhhhccccCCCEEECCC
Confidence 110 1123345677777777754
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.95 E-value=4.2e-10 Score=114.92 Aligned_cols=103 Identities=18% Similarity=0.211 Sum_probs=45.0
Q ss_pred CCcceEEeeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccc
Q 043655 285 SKLKVLNWEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTN 362 (512)
Q Consensus 285 p~L~~L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~ 362 (512)
++|+.|+++++.+... ..++++++|+.++++.+...+.. ...+..+++|+.|+++.+.+..+.. ..
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~~L~~L~Ls~N~l~~~~~----~~ 342 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID--------DNAFWGLTHLLKLNLSQNFLGSIDS----RM 342 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC--------TTTTTTCTTCCEEECCSSCCCEECG----GG
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC--------hhHhcCcccCCEEECCCCccCCcCh----hH
Confidence 3555555555443221 22445556666655543322110 1124455566666665554322110 12
Q ss_pred cccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655 363 LHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILK 402 (512)
Q Consensus 363 ~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~ 402 (512)
...+++|++|+|..+.-. . ..+..+..+|+|+.|++.
T Consensus 343 ~~~l~~L~~L~Ls~N~l~-~--~~~~~~~~l~~L~~L~L~ 379 (455)
T 3v47_A 343 FENLDKLEVLDLSYNHIR-A--LGDQSFLGLPNLKELALD 379 (455)
T ss_dssp GTTCTTCCEEECCSSCCC-E--ECTTTTTTCTTCCEEECC
T ss_pred hcCcccCCEEECCCCccc-c--cChhhccccccccEEECC
Confidence 334556666666543111 0 012233456666666664
No 17
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.93 E-value=3e-11 Score=120.72 Aligned_cols=183 Identities=15% Similarity=0.058 Sum_probs=103.5
Q ss_pred CCcccceecccccc--c-----cchhcccccccceeeeccccCccce---eEec--------------cCcceEEEeeec
Q 043655 216 SFPHLKKLDLDACY--G-----LKQLKVGCRALEDLTLDNCIQLCGL---DIFG--------------TKLERLRVASCF 271 (512)
Q Consensus 216 ~~p~L~~L~L~~~~--~-----l~~l~~~cp~Le~L~l~~c~~l~~~---~v~~--------------~~L~~L~l~~c~ 271 (512)
.+++|++|+|.++. . +...+..+++|+.|+|.+|.. ... .+.. ++|++|.+.+|.
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 46666666666654 1 222345567777777766642 110 0110 567777776654
Q ss_pred cccCCCce---EEEeCCCcceEEeeccccCCC------c-cccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcc
Q 043655 272 DAYCDKSW---VKIDASKLKVLNWEYNAITAS------S-SLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHA 341 (512)
Q Consensus 272 ~~~~~~~~---~~i~~p~L~~L~~~~~~~~~~------~-~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l 341 (512)
........ .....++|++|.+.++.+... . .+..+++|+.++++.+...+. ....+...+..+++|
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~----g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL----GSSALAIALKSWPNL 246 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH----HHHHHHHHGGGCTTC
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH----HHHHHHHHHccCCCc
Confidence 32111110 111456888888887765421 1 466788888888876643211 123455677888999
Q ss_pred cEeeecchhhhhhccccccccc--ccccccceEEEEeeccC-CcHHHHHHHH-hhCCCCcEEEEEe
Q 043655 342 RSLTLESPCIEILSNRNYFTNL--HTFTNLKSLELHTGFNK-HNVQGLACLF-RSSPSIHTLILKI 403 (512)
Q Consensus 342 ~~L~l~~~~~~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~-~~~~~l~~~L-~~cp~Le~L~l~~ 403 (512)
+.|+|+.+.+...........+ ..+++|++|+|..+.-. .....++..+ .++|+|++|++..
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 9999987764332111111122 23788999999764222 1123455555 6789999998864
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.92 E-value=1.6e-09 Score=108.38 Aligned_cols=234 Identities=17% Similarity=0.162 Sum_probs=129.1
Q ss_pred cCCceeEEEeccCCCCCCCc-ceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655 138 HNVEELDIEVATDDYFNLPR-CVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS 216 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 216 (512)
+.++.|++.... ...++. .+..+++|++|+|++|... .+++. ....+++|++|+|+++.+..-.. .++ ..
T Consensus 69 ~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~~~l~~L~~L~L~~n~l~~l~~--~~~--~~ 139 (390)
T 3o6n_A 69 RQVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPH--VFQNVPLLTVLVLERNDLSSLPR--GIF--HN 139 (390)
T ss_dssp CCCSEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCC-CCCTT--TTTTCTTCCEEECCSSCCCCCCT--TTT--TT
T ss_pred ccCcEEECCCCc--ccccChhhccCCCCcCEEECCCCCCC-cCCHH--HhcCCCCCCEEECCCCccCcCCH--HHh--cC
Confidence 456666554221 122222 2334666777777664211 12221 12356667777776665553211 111 24
Q ss_pred Ccccceecccccc--cc-chhcccccccceeeeccccCccceeEe--------------------ccCcceEEEeeeccc
Q 043655 217 FPHLKKLDLDACY--GL-KQLKVGCRALEDLTLDNCIQLCGLDIF--------------------GTKLERLRVASCFDA 273 (512)
Q Consensus 217 ~p~L~~L~L~~~~--~l-~~l~~~cp~Le~L~l~~c~~l~~~~v~--------------------~~~L~~L~l~~c~~~ 273 (512)
+++|++|+|.++. .+ ...+..+++|+.|++.++.. ..+.+. .++|+.|.+.++...
T Consensus 140 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~ 218 (390)
T 3o6n_A 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 218 (390)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC-SBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCC
T ss_pred CCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC-CccccccccccceeecccccccccCCCCcceEEECCCCeee
Confidence 6667777766654 11 12244566666666666542 111111 134555555554321
Q ss_pred cCCCceEE-EeCCCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhh
Q 043655 274 YCDKSWVK-IDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIE 352 (512)
Q Consensus 274 ~~~~~~~~-i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~ 352 (512)
.+. ...++|+.|.+.++.+.....+.++++|++++++.+...+.. ...+..+++|+.|+++.+.+.
T Consensus 219 -----~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~~L~~L~L~~n~l~ 285 (390)
T 3o6n_A 219 -----VVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM--------YHPFVKMQRLERLYISNNRLV 285 (390)
T ss_dssp -----EEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEE--------SGGGTTCSSCCEEECCSSCCC
T ss_pred -----eccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcC--------hhHccccccCCEEECCCCcCc
Confidence 111 124678888888887766666778889999888766443221 124667888999999887654
Q ss_pred hhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655 353 ILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI 403 (512)
Q Consensus 353 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~ 403 (512)
.+.. ....+++|++|+|..+.-. .++..+..+|+|++|++..
T Consensus 286 ~~~~-----~~~~l~~L~~L~L~~n~l~----~~~~~~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 286 ALNL-----YGQPIPTLKVLDLSHNHLL----HVERNQPQFDRLENLYLDH 327 (390)
T ss_dssp EEEC-----SSSCCTTCCEEECCSSCCC----CCGGGHHHHTTCSEEECCS
T ss_pred ccCc-----ccCCCCCCCEEECCCCcce----ecCccccccCcCCEEECCC
Confidence 4321 3346789999998764222 2222345679999998864
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.90 E-value=1.7e-09 Score=114.44 Aligned_cols=212 Identities=17% Similarity=0.161 Sum_probs=106.0
Q ss_pred ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--cc-chhccc
Q 043655 161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GL-KQLKVG 237 (512)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l-~~l~~~ 237 (512)
.+++|++|+|++|.. ..+++. ....+++|++|+|+++.+..-.. .++ ..+++|+.|+|.++. ++ ...+..
T Consensus 97 ~l~~L~~L~L~~n~l-~~~~~~--~~~~l~~L~~L~L~~n~l~~l~~--~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~ 169 (597)
T 3oja_B 97 YAHTIQKLYMGFNAI-RYLPPH--VFQNVPLLTVLVLERNDLSSLPR--GIF--HNTPKLTTLSMSNNNLERIEDDTFQA 169 (597)
T ss_dssp TCTTCCEEECCSSCC-CCCCTT--TTTTCTTCCEEECCSSCCCCCCT--TTT--TTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred CCCCCCEEECCCCcC-CCCCHH--HHcCCCCCCEEEeeCCCCCCCCH--HHh--ccCCCCCEEEeeCCcCCCCChhhhhc
Confidence 455666666665321 112221 12345666666666555543111 011 245666666665553 11 122344
Q ss_pred ccccceeeeccccCccceeEe--------------------ccCcceEEEeeeccccCCCceEEE-eCCCcceEEeeccc
Q 043655 238 CRALEDLTLDNCIQLCGLDIF--------------------GTKLERLRVASCFDAYCDKSWVKI-DASKLKVLNWEYNA 296 (512)
Q Consensus 238 cp~Le~L~l~~c~~l~~~~v~--------------------~~~L~~L~l~~c~~~~~~~~~~~i-~~p~L~~L~~~~~~ 296 (512)
+++|+.|++.+|.. ..+.+. .++|+.|.+.++... .+.. ..++|+.|.++++.
T Consensus 170 l~~L~~L~L~~N~l-~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~-----~~~~~~~~~L~~L~L~~n~ 243 (597)
T 3oja_B 170 TTSLQNLQLSSNRL-THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-----VVRGPVNVELTILKLQHNN 243 (597)
T ss_dssp CTTCCEEECTTSCC-SBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCC-----EEECSCCSCCCEEECCSSC
T ss_pred CCcCcEEECcCCCC-CCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccc-----ccccccCCCCCEEECCCCC
Confidence 55566666655531 111111 134555555544221 1111 23577888887777
Q ss_pred cCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEe
Q 043655 297 ITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHT 376 (512)
Q Consensus 297 ~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 376 (512)
+.....+.++++|+.++++.+...+.. ...+..+++|+.|+++.+.+..+.. ....+++|+.|+|..
T Consensus 244 l~~~~~l~~l~~L~~L~Ls~N~l~~~~--------~~~~~~l~~L~~L~Ls~N~l~~l~~-----~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 244 LTDTAWLLNYPGLVEVDLSYNELEKIM--------YHPFVKMQRLERLYISNNRLVALNL-----YGQPIPTLKVLDLSH 310 (597)
T ss_dssp CCCCGGGGGCTTCSEEECCSSCCCEEE--------SGGGTTCSSCCEEECTTSCCCEEEC-----SSSCCTTCCEEECCS
T ss_pred CCCChhhccCCCCCEEECCCCccCCCC--------HHHhcCccCCCEEECCCCCCCCCCc-----ccccCCCCcEEECCC
Confidence 666566777888888888765433221 1235667778888887765433221 223466777777765
Q ss_pred eccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655 377 GFNKHNVQGLACLFRSSPSIHTLILK 402 (512)
Q Consensus 377 ~~~~~~~~~l~~~L~~cp~Le~L~l~ 402 (512)
+... .++..+..+|+|+.|++.
T Consensus 311 N~l~----~i~~~~~~l~~L~~L~L~ 332 (597)
T 3oja_B 311 NHLL----HVERNQPQFDRLENLYLD 332 (597)
T ss_dssp SCCC----CCGGGHHHHTTCSEEECC
T ss_pred CCCC----ccCcccccCCCCCEEECC
Confidence 3221 122223455666666654
No 20
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.90 E-value=4.2e-11 Score=122.58 Aligned_cols=255 Identities=17% Similarity=0.145 Sum_probs=155.0
Q ss_pred CCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccC---CCccccccCcccceEEeeeEEeeCccchhhhhcCC
Q 043655 139 NVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLP---PSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDS 215 (512)
Q Consensus 139 ~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~---~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~ 215 (512)
.+++|++....-....+...+..+++|++|+|++|. +... ........+++|++|+|+++.+.+. +...+..
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~--l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~-~~~~l~~-- 78 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG--LTEARCKDISSALRVNPALAELNLRSNELGDV-GVHCVLQ-- 78 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC--CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHH-HHHHHHH--
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCC--CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChH-HHHHHHH--
Confidence 456666653321111111113358899999999853 2210 0001133579999999999887652 2222221
Q ss_pred CCc----ccceecccccc-------ccchhcccccccceeeeccccCccceeEe---------ccCcceEEEeeeccccC
Q 043655 216 SFP----HLKKLDLDACY-------GLKQLKVGCRALEDLTLDNCIQLCGLDIF---------GTKLERLRVASCFDAYC 275 (512)
Q Consensus 216 ~~p----~L~~L~L~~~~-------~l~~l~~~cp~Le~L~l~~c~~l~~~~v~---------~~~L~~L~l~~c~~~~~ 275 (512)
.++ +|++|+|.+|. .+...+..+++|++|++.+|. +....+. .++|++|.+.+|.....
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 157 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence 233 79999999986 124456789999999999986 3221111 24799999998854322
Q ss_pred CCceE---EEeCCCcceEEeeccccCCC--cccc-----CcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEee
Q 043655 276 DKSWV---KIDASKLKVLNWEYNAITAS--SSLE-----NLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLT 345 (512)
Q Consensus 276 ~~~~~---~i~~p~L~~L~~~~~~~~~~--~~l~-----~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~ 345 (512)
....+ ....++|++|.++++.+... ..+. ..++|+.++++.+...+.. ...+...+..+++++.|+
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~----~~~l~~~l~~~~~L~~L~ 233 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN----CRDLCGIVASKASLRELA 233 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH----HHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH----HHHHHHHHHhCCCccEEe
Confidence 11111 11358999999998765322 1111 3568999999877543321 234566778899999999
Q ss_pred ecchhhhhhcccccc-cccccccccceEEEEeeccC-CcHHHHHHHHhhCCCCcEEEEEe
Q 043655 346 LESPCIEILSNRNYF-TNLHTFTNLKSLELHTGFNK-HNVQGLACLFRSSPSIHTLILKI 403 (512)
Q Consensus 346 l~~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~-~~~~~l~~~L~~cp~Le~L~l~~ 403 (512)
++.+.+......... .....+++|++|+|..+.-. .....+...+..+|+|++|++..
T Consensus 234 Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 293 (461)
T 1z7x_W 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 293 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred ccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC
Confidence 998754332211100 12224789999999764221 22334777888999999999864
No 21
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.89 E-value=2.9e-09 Score=104.88 Aligned_cols=207 Identities=18% Similarity=0.105 Sum_probs=90.9
Q ss_pred eccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccch--hc
Q 043655 160 ITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQ--LK 235 (512)
Q Consensus 160 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~--l~ 235 (512)
..+++|++|+|++|... .+++.. ...+++|++|+|+++.+.+-.. ..+ ..+++|++|+|.++. .+.. .+
T Consensus 73 ~~l~~L~~L~L~~n~l~-~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~--~~l~~L~~L~L~~n~l~~l~~~~~~ 145 (353)
T 2z80_A 73 QRCVNLQALVLTSNGIN-TIEEDS--FSSLGSLEHLDLSYNYLSNLSS--SWF--KPLSSLTFLNLLGNPYKTLGETSLF 145 (353)
T ss_dssp TTCTTCCEEECTTSCCC-EECTTT--TTTCTTCCEEECCSSCCSSCCH--HHH--TTCTTCSEEECTTCCCSSSCSSCSC
T ss_pred ccCCCCCEEECCCCccC-ccCHhh--cCCCCCCCEEECCCCcCCcCCH--hHh--CCCccCCEEECCCCCCcccCchhhh
Confidence 34566666666653211 122211 2345666666666665543211 111 245666666666553 2222 34
Q ss_pred ccccccceeeeccccCccceeEe----ccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccccCcccc
Q 043655 236 VGCRALEDLTLDNCIQLCGLDIF----GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLENLASL 309 (512)
Q Consensus 236 ~~cp~Le~L~l~~c~~l~~~~v~----~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~~~~~L 309 (512)
..+++|+.|++.+|..+..+... .++|+.|.+.++......... .-..++|++|.++++.+... ..+..+++|
T Consensus 146 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 224 (353)
T 2z80_A 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS-LKSIQNVSHLILHMKQHILLLEIFVDVTSSV 224 (353)
T ss_dssp TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSCSTTHHHHHHHHTTTE
T ss_pred ccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH-HhccccCCeecCCCCccccchhhhhhhcccc
Confidence 45666666666665433322111 145556666554321110000 00123444444444332111 011223444
Q ss_pred eeeEEeeEEcccc-----------------------hhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccc
Q 043655 310 HEASVGFILLHED-----------------------LTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTF 366 (512)
Q Consensus 310 ~~l~l~~~~~~~~-----------------------~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~ 366 (512)
+.++++.+...+. ........+...+..+++|+.|+++.+.+..+.. .....+
T Consensus 225 ~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~----~~~~~l 300 (353)
T 2z80_A 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD----GIFDRL 300 (353)
T ss_dssp EEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT----TTTTTC
T ss_pred cEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH----HHHhcC
Confidence 4444443322110 0001122344556677777777777665442221 122456
Q ss_pred cccceEEEEeec
Q 043655 367 TNLKSLELHTGF 378 (512)
Q Consensus 367 ~~L~~L~L~~~~ 378 (512)
++|++|+|..+.
T Consensus 301 ~~L~~L~L~~N~ 312 (353)
T 2z80_A 301 TSLQKIWLHTNP 312 (353)
T ss_dssp TTCCEEECCSSC
T ss_pred CCCCEEEeeCCC
Confidence 677777776543
No 22
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.88 E-value=6.2e-10 Score=107.97 Aligned_cols=244 Identities=15% Similarity=0.091 Sum_probs=156.5
Q ss_pred hhhHHHHHHHh--cCCceeEEEeccCCCCCCC-cceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEee
Q 043655 127 CLNGLIRRAIR--HNVEELDIEVATDDYFNLP-RCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILF 203 (512)
Q Consensus 127 ~~~~wi~~~~~--~~v~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 203 (512)
.+...+..... .++++|++.... ...++ ..+..+++|++|+|++|... ..++ ...+++|++|+|+++.+.
T Consensus 21 ~l~~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~----~~~l~~L~~L~Ls~n~l~ 93 (317)
T 3o53_A 21 SLKQALASLRQSAWNVKELDLSGNP--LSQISAADLAPFTKLELLNLSSNVLY-ETLD----LESLSTLRTLDLNNNYVQ 93 (317)
T ss_dssp THHHHHHHHHTTGGGCSEEECTTSC--CCCCCHHHHTTCTTCCEEECTTSCCE-EEEE----ETTCTTCCEEECCSSEEE
T ss_pred chhhhHHHHhccCCCCCEEECcCCc--cCcCCHHHhhCCCcCCEEECCCCcCC-cchh----hhhcCCCCEEECcCCccc
Confidence 34444444433 467777765332 22344 34456889999999985321 1222 346899999999998876
Q ss_pred CccchhhhhcCCCCcccceeccccccccchhcccccccceeeeccccCccc--eeEe-ccCcceEEEeeeccccCCCceE
Q 043655 204 NQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRALEDLTLDNCIQLCG--LDIF-GTKLERLRVASCFDAYCDKSWV 280 (512)
Q Consensus 204 ~~~~l~~l~~~~~~p~L~~L~L~~~~~l~~l~~~cp~Le~L~l~~c~~l~~--~~v~-~~~L~~L~l~~c~~~~~~~~~~ 280 (512)
+-. .+++|+.|++.++.--......+++|+.|++.++..... ..+. .++|+.|.+.++.........+
T Consensus 94 ~l~---------~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 94 ELL---------VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp EEE---------ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred ccc---------CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 532 358999999988762222233578899999988863221 1222 2788888887764321111111
Q ss_pred EEeCCCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccc
Q 043655 281 KIDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYF 360 (512)
Q Consensus 281 ~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~ 360 (512)
.-..++|++|.++++.+........+++|+.++++.+....- ...+..+++|+.|+++.+.+..+.
T Consensus 165 ~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l---------~~~~~~l~~L~~L~L~~N~l~~l~----- 230 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM---------GPEFQSAAGVTWISLRNNKLVLIE----- 230 (317)
T ss_dssp GGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEE---------CGGGGGGTTCSEEECTTSCCCEEC-----
T ss_pred hhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcc---------hhhhcccCcccEEECcCCcccchh-----
Confidence 113588999999988765544455688999999886654321 112567889999999988765432
Q ss_pred cccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655 361 TNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILK 402 (512)
Q Consensus 361 ~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~ 402 (512)
.....+++|+.|+|..+. .....+..++..+|+|+.|.+.
T Consensus 231 ~~~~~l~~L~~L~l~~N~--~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 231 KALRFSQNLEHFDLRGNG--FHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp TTCCCCTTCCEEECTTCC--CBHHHHHHHHHTCHHHHHHHHH
T ss_pred hHhhcCCCCCEEEccCCC--ccCcCHHHHHhccccceEEECC
Confidence 234577899999997542 2234778889999999988775
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.88 E-value=9.2e-10 Score=115.76 Aligned_cols=223 Identities=18% Similarity=0.132 Sum_probs=112.7
Q ss_pred CCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--cc
Q 043655 154 NLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GL 231 (512)
Q Consensus 154 ~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l 231 (512)
.+|..+..+ +|++|+|.+|... .+|. ..+++|++|++.++.+...... ..+|+|++|++.++. .+
T Consensus 296 ~l~~~~~~~-~L~~L~l~~n~~~-~l~~-----~~l~~L~~L~l~~n~~~~~~~~------~~~~~L~~L~l~~n~l~~~ 362 (570)
T 2z63_A 296 RVKDFSYNF-GWQHLELVNCKFG-QFPT-----LKLKSLKRLTFTSNKGGNAFSE------VDLPSLEFLDLSRNGLSFK 362 (570)
T ss_dssp SCCBCCSCC-CCSEEEEESCBCS-SCCB-----CBCSSCCEEEEESCBSCCBCCC------CBCTTCCEEECCSSCCBEE
T ss_pred hhhhhhccC-CccEEeeccCccc-ccCc-----ccccccCEEeCcCCcccccccc------ccCCCCCEEeCcCCccCcc
Confidence 344444445 6666666653221 2221 2466666666666554332111 356777777776654 11
Q ss_pred ---chhcccccccceeeeccccCcccee-Ee-ccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--cccc
Q 043655 232 ---KQLKVGCRALEDLTLDNCIQLCGLD-IF-GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLE 304 (512)
Q Consensus 232 ---~~l~~~cp~Le~L~l~~c~~l~~~~-v~-~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~ 304 (512)
...+..+++|+.|++.+|....... +. .++|++|.+.+|..............++|++|.++++.+... ..+.
T Consensus 363 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 442 (570)
T 2z63_A 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442 (570)
T ss_dssp EEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred ccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhh
Confidence 2334456777777777664221111 11 256777776665332111100111346677777766544221 2355
Q ss_pred CcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHH
Q 043655 305 NLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQ 384 (512)
Q Consensus 305 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 384 (512)
++++|+.++++.+...+. .+...+..+++|+.|+++.+.+.... +.....+++|++|+|..+.-..
T Consensus 443 ~l~~L~~L~l~~n~l~~~-------~~p~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~--- 508 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQEN-------FLPDIFTELRNLTFLDLSQCQLEQLS----PTAFNSLSSLQVLNMASNQLKS--- 508 (570)
T ss_dssp TCTTCCEEECTTCEEGGG-------EECSCCTTCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCSC---
T ss_pred cCCcCcEEECcCCcCccc-------cchhhhhcccCCCEEECCCCccccCC----hhhhhcccCCCEEeCCCCcCCC---
Confidence 667777777765543210 01123556677777777766533221 1233456777777776532111
Q ss_pred HHHHHHhhCCCCcEEEEEe
Q 043655 385 GLACLFRSSPSIHTLILKI 403 (512)
Q Consensus 385 ~l~~~L~~cp~Le~L~l~~ 403 (512)
.....+..+|+|+.|++..
T Consensus 509 ~~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 509 VPDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp CCTTTTTTCTTCCEEECCS
T ss_pred CCHHHhhcccCCcEEEecC
Confidence 1123456777787777754
No 24
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.87 E-value=1.1e-09 Score=105.62 Aligned_cols=139 Identities=14% Similarity=0.116 Sum_probs=81.0
Q ss_pred ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhcccc
Q 043655 161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGC 238 (512)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~c 238 (512)
.+++|++|++.++ .+...+ ....+++|++|+|+++.+.+-..+ ..+++|+.|+|.++. ++. -+..+
T Consensus 39 ~l~~L~~L~l~~~--~i~~l~---~~~~l~~L~~L~L~~n~i~~~~~~------~~l~~L~~L~L~~n~l~~~~-~~~~l 106 (308)
T 1h6u_A 39 DLDGITTLSAFGT--GVTTIE---GVQYLNNLIGLELKDNQITDLAPL------KNLTKITELELSGNPLKNVS-AIAGL 106 (308)
T ss_dssp HHHTCCEEECTTS--CCCCCT---TGGGCTTCCEEECCSSCCCCCGGG------TTCCSCCEEECCSCCCSCCG-GGTTC
T ss_pred HcCCcCEEEeeCC--CccCch---hhhccCCCCEEEccCCcCCCChhH------ccCCCCCEEEccCCcCCCch-hhcCC
Confidence 4788999999984 332222 134689999999999988764332 478999999999886 343 34568
Q ss_pred cccceeeeccccCcccee-Ee-ccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCCccccCcccceeeEEe
Q 043655 239 RALEDLTLDNCIQLCGLD-IF-GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVG 315 (512)
Q Consensus 239 p~Le~L~l~~c~~l~~~~-v~-~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~ 315 (512)
++|+.|++.+|.. ..+. +. .++|+.|.+.++...... . ....++|+.|.++++.+.....+..+++|+.++++
T Consensus 107 ~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 107 QSIKTLDLTSTQI-TDVTPLAGLSNLQVLYLDLNQITNIS--P-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD 181 (308)
T ss_dssp TTCCEEECTTSCC-CCCGGGTTCTTCCEEECCSSCCCCCG--G-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred CCCCEEECCCCCC-CCchhhcCCCCCCEEECCCCccCcCc--c-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECC
Confidence 8899999988863 2211 11 145566655554322110 0 01234555555554443333224444444444444
No 25
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.87 E-value=2.6e-09 Score=109.02 Aligned_cols=235 Identities=16% Similarity=0.097 Sum_probs=156.3
Q ss_pred EEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceec
Q 043655 145 IEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLD 224 (512)
Q Consensus 145 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~ 224 (512)
+.........+|..+. ++|++|+|++|... .+++.. ...+++|++|+|+++.+.+.. ...+ ..+++|++|+
T Consensus 59 v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~-~~~~~~--~~~l~~L~~L~Ls~n~i~~~~--~~~~--~~l~~L~~L~ 129 (452)
T 3zyi_A 59 VVCTRRGLSEVPQGIP--SNTRYLNLMENNIQ-MIQADT--FRHLHHLEVLQLGRNSIRQIE--VGAF--NGLASLNTLE 129 (452)
T ss_dssp EECCSSCCSSCCSCCC--TTCSEEECCSSCCC-EECTTT--TTTCTTCCEEECCSSCCCEEC--TTTT--TTCTTCCEEE
T ss_pred EEECCCCcCccCCCCC--CCccEEECcCCcCc-eECHHH--cCCCCCCCEEECCCCccCCcC--hhhc--cCcccCCEEE
Confidence 3333444556676543 68999999985322 233322 357999999999998776521 0112 4789999999
Q ss_pred ccccc--cc-chhcccccccceeeeccccCccceeE----eccCcceEEEeeeccccCCCceEEEeCCCcceEEeecccc
Q 043655 225 LDACY--GL-KQLKVGCRALEDLTLDNCIQLCGLDI----FGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAI 297 (512)
Q Consensus 225 L~~~~--~l-~~l~~~cp~Le~L~l~~c~~l~~~~v----~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~ 297 (512)
|.++. .+ ...+..+++|+.|+|.++.. ..+.. ..++|++|.+.+|.....-.....-..++|++|.++++.+
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCcCCccChhhhcccCCCCEEECCCCCc-ceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence 99886 22 23456789999999999863 33221 1279999999886433110000011468999999999888
Q ss_pred CCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEee
Q 043655 298 TASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTG 377 (512)
Q Consensus 298 ~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 377 (512)
.....+..+++|+.++++.+...+.. ...+..+++|+.|++..+.+..+.. .....+++|++|+|..+
T Consensus 209 ~~~~~~~~l~~L~~L~Ls~N~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 209 KDMPNLTPLVGLEELEMSGNHFPEIR--------PGSFHGLSSLKKLWVMNSQVSLIER----NAFDGLASLVELNLAHN 276 (452)
T ss_dssp SSCCCCTTCTTCCEEECTTSCCSEEC--------GGGGTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECCSS
T ss_pred cccccccccccccEEECcCCcCcccC--------cccccCccCCCEEEeCCCcCceECH----HHhcCCCCCCEEECCCC
Confidence 76667888999999999866543221 2347788999999999876544322 24457889999999764
Q ss_pred ccCCcHHHHHHHHhhCCCCcEEEEEee
Q 043655 378 FNKHNVQGLACLFRSSPSIHTLILKII 404 (512)
Q Consensus 378 ~~~~~~~~l~~~L~~cp~Le~L~l~~~ 404 (512)
.-. . .....+..+++|+.|+|...
T Consensus 277 ~l~-~--~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 277 NLS-S--LPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CCS-C--CCTTSSTTCTTCCEEECCSS
T ss_pred cCC-c--cChHHhccccCCCEEEccCC
Confidence 221 1 11234678999999999754
No 26
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.86 E-value=1.5e-09 Score=74.57 Aligned_cols=37 Identities=27% Similarity=0.402 Sum_probs=33.0
Q ss_pred CCccCCCChHHHHHHHccCCchhhHHHhhhcHhHHHh
Q 043655 23 IDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSL 59 (512)
Q Consensus 23 ~D~is~LPdevl~~Ils~L~~~d~~rts~lSrrWr~l 59 (512)
.+.++.||+|++.+||++|+.+|+++++.|||+|+.+
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~ 42 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 42 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHH
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999975
No 27
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.86 E-value=6.1e-10 Score=114.64 Aligned_cols=232 Identities=16% Similarity=0.086 Sum_probs=150.2
Q ss_pred CCceeEEEeccCCCCCCC-cceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655 139 NVEELDIEVATDDYFNLP-RCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF 217 (512)
Q Consensus 139 ~v~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 217 (512)
+++.|++.... ...++ ..+..+++|++|+|++|... ..++ ...+++|++|+|+++.+.+-. ..
T Consensus 35 ~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~----l~~l~~L~~L~Ls~N~l~~l~---------~~ 98 (487)
T 3oja_A 35 NVKELDLSGNP--LSQISAADLAPFTKLELLNLSSNVLY-ETLD----LESLSTLRTLDLNNNYVQELL---------VG 98 (487)
T ss_dssp GCCEEECCSSC--CCCCCGGGGTTCTTCCEEECTTSCCE-EEEE----CTTCTTCCEEECCSSEEEEEE---------EC
T ss_pred CccEEEeeCCc--CCCCCHHHHhCCCCCCEEEeeCCCCC-CCcc----cccCCCCCEEEecCCcCCCCC---------CC
Confidence 56677666432 22343 34557889999999985322 1222 346899999999998887532 34
Q ss_pred cccceeccccccccchhcccccccceeeeccccCccc--eeEe-ccCcceEEEeeeccccCCCceEEEeCCCcceEEeec
Q 043655 218 PHLKKLDLDACYGLKQLKVGCRALEDLTLDNCIQLCG--LDIF-GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEY 294 (512)
Q Consensus 218 p~L~~L~L~~~~~l~~l~~~cp~Le~L~l~~c~~l~~--~~v~-~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~ 294 (512)
|+|+.|++.++.--......++.|+.|++.+|..... ..+. .++|+.|.+.++.........+.-..++|++|++++
T Consensus 99 ~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp TTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 8899999988762222223568899999988863221 1222 378888888776432111111111358899999998
Q ss_pred cccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEE
Q 043655 295 NAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLEL 374 (512)
Q Consensus 295 ~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L 374 (512)
+.+........+++|+.++++.+...+-. .-+..+++|+.|+++.+.+..+. .....+++|+.|+|
T Consensus 179 N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~---------~~~~~l~~L~~L~Ls~N~l~~lp-----~~l~~l~~L~~L~l 244 (487)
T 3oja_A 179 NFIYDVKGQVVFAKLKTLDLSSNKLAFMG---------PEFQSAAGVTWISLRNNKLVLIE-----KALRFSQNLEHFDL 244 (487)
T ss_dssp SCCCEEECCCCCTTCCEEECCSSCCCEEC---------GGGGGGTTCSEEECTTSCCCEEC-----TTCCCCTTCCEEEC
T ss_pred CccccccccccCCCCCEEECCCCCCCCCC---------HhHcCCCCccEEEecCCcCcccc-----hhhccCCCCCEEEc
Confidence 87765555557899999998876543211 12567889999999987755322 23456789999988
Q ss_pred EeeccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655 375 HTGFNKHNVQGLACLFRSSPSIHTLILK 402 (512)
Q Consensus 375 ~~~~~~~~~~~l~~~L~~cp~Le~L~l~ 402 (512)
..+. .....++.++..+|.|+.|.+.
T Consensus 245 ~~N~--l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 245 RGNG--FHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCC--BCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCC--CcCcchHHHHHhCCCCcEEecc
Confidence 6542 2234677888888888877663
No 28
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.86 E-value=2.8e-09 Score=108.38 Aligned_cols=235 Identities=17% Similarity=0.118 Sum_probs=154.2
Q ss_pred EEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceec
Q 043655 145 IEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLD 224 (512)
Q Consensus 145 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~ 224 (512)
+.........+|..+. ++++.|+|++|... .+++.. ...+++|++|+|+++.+.+-.. ..+ ..+++|++|+
T Consensus 48 v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~-~~~~~~--~~~l~~L~~L~Ls~n~i~~i~~--~~~--~~l~~L~~L~ 118 (440)
T 3zyj_A 48 VICVRKNLREVPDGIS--TNTRLLNLHENQIQ-IIKVNS--FKHLRHLEILQLSRNHIRTIEI--GAF--NGLANLNTLE 118 (440)
T ss_dssp EECCSCCCSSCCSCCC--TTCSEEECCSCCCC-EECTTT--TSSCSSCCEEECCSSCCCEECG--GGG--TTCSSCCEEE
T ss_pred EEeCCCCcCcCCCCCC--CCCcEEEccCCcCC-eeCHHH--hhCCCCCCEEECCCCcCCccCh--hhc--cCCccCCEEE
Confidence 3333444556776553 68899999985321 233222 3578999999999987764210 112 4789999999
Q ss_pred ccccc--ccc-hhcccccccceeeeccccCccceeE----eccCcceEEEeeeccccCCCceEEEeCCCcceEEeecccc
Q 043655 225 LDACY--GLK-QLKVGCRALEDLTLDNCIQLCGLDI----FGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAI 297 (512)
Q Consensus 225 L~~~~--~l~-~l~~~cp~Le~L~l~~c~~l~~~~v----~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~ 297 (512)
|.++. .+. ..+..+++|+.|+|.++.. ..+.- ..++|+.|.+.+|.....-.....-..++|++|.++++.+
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcc-cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence 99875 332 3456789999999999863 22221 1278999999886432110000011368999999999887
Q ss_pred CCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEee
Q 043655 298 TASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTG 377 (512)
Q Consensus 298 ~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 377 (512)
.....+..+++|+.++++.+...+.. ...+..+++|+.|.+..+.+..+.. .....+++|++|+|..+
T Consensus 198 ~~~~~~~~l~~L~~L~Ls~N~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 198 REIPNLTPLIKLDELDLSGNHLSAIR--------PGSFQGLMHLQKLWMIQSQIQVIER----NAFDNLQSLVEINLAHN 265 (440)
T ss_dssp SSCCCCTTCSSCCEEECTTSCCCEEC--------TTTTTTCTTCCEEECTTCCCCEECT----TSSTTCTTCCEEECTTS
T ss_pred ccccccCCCcccCEEECCCCccCccC--------hhhhccCccCCEEECCCCceeEECh----hhhcCCCCCCEEECCCC
Confidence 76667888999999999866432211 2346788999999998876544322 24457789999999754
Q ss_pred ccCCcHHHHHHHHhhCCCCcEEEEEee
Q 043655 378 FNKHNVQGLACLFRSSPSIHTLILKII 404 (512)
Q Consensus 378 ~~~~~~~~l~~~L~~cp~Le~L~l~~~ 404 (512)
.-.. .....+..+++|+.|+|...
T Consensus 266 ~l~~---~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 266 NLTL---LPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CCCC---CCTTTTSSCTTCCEEECCSS
T ss_pred CCCc---cChhHhccccCCCEEEcCCC
Confidence 2211 11234678899999998753
No 29
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.85 E-value=4.8e-10 Score=108.14 Aligned_cols=60 Identities=27% Similarity=0.185 Sum_probs=25.5
Q ss_pred cCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhcccccccceeeeccc
Q 043655 188 GFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGCRALEDLTLDNC 249 (512)
Q Consensus 188 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c 249 (512)
.+++|++|+|+++.+...+.....+ ..+++|++|+|.++. .+..-+..+++|+.|++.++
T Consensus 50 ~l~~L~~L~L~~n~l~~~~~~~~~~--~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n 111 (306)
T 2z66_A 50 KLTQLTKLSLSSNGLSFKGCCSQSD--FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 111 (306)
T ss_dssp TCTTCSEEECCSSCCCEEEEEEHHH--HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS
T ss_pred ccccCCEEECCCCccCcccCccccc--ccccccCEEECCCCccccChhhcCCCCCCCEEECCCC
Confidence 4555555555554443211000001 134555555555543 22222334555555555554
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.85 E-value=6.8e-10 Score=117.73 Aligned_cols=235 Identities=16% Similarity=0.077 Sum_probs=126.3
Q ss_pred cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF 217 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 217 (512)
.+++.+++..... ..+| .+..+++|++|+|.+|.. ..+|. . .+++|++|+++++.......+ ..+
T Consensus 285 ~~L~~L~l~~~~~--~~l~-~l~~~~~L~~L~l~~n~l-~~lp~--~---~l~~L~~L~l~~n~~~~~~~~------~~l 349 (606)
T 3vq2_A 285 ANVSAMSLAGVSI--KYLE-DVPKHFKWQSLSIIRCQL-KQFPT--L---DLPFLKSLTLTMNKGSISFKK------VAL 349 (606)
T ss_dssp TTCSEEEEESCCC--CCCC-CCCTTCCCSEEEEESCCC-SSCCC--C---CCSSCCEEEEESCSSCEECCC------CCC
T ss_pred CCCCEEEecCccc--hhhh-hccccccCCEEEcccccC-ccccc--C---CCCccceeeccCCcCccchhh------ccC
Confidence 5777777764432 3455 455678888888888533 23331 1 678888888877743322111 367
Q ss_pred cccceecccccc--cc---chhcccccccceeeeccccCcccee--E-eccCcceEEEeeeccccCCCceEEEeCCCcce
Q 043655 218 PHLKKLDLDACY--GL---KQLKVGCRALEDLTLDNCIQLCGLD--I-FGTKLERLRVASCFDAYCDKSWVKIDASKLKV 289 (512)
Q Consensus 218 p~L~~L~L~~~~--~l---~~l~~~cp~Le~L~l~~c~~l~~~~--v-~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~ 289 (512)
|+|+.|++.++. ++ ...+..++.|+.|++.+|.. ..+. + ..++|+.|.+.++..............++|++
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE-EEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc-ccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 888888887765 22 34455677888888877752 2221 1 12677777777654322111001113466777
Q ss_pred EEeeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccccccccc
Q 043655 290 LNWEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFT 367 (512)
Q Consensus 290 L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~ 367 (512)
|+++++.+... ..+.++++|+.++++.+...+.. ....+..+++|+.|+++.+.+..... .....++
T Consensus 429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~ 497 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT-------LSNVFANTTNLTFLDLSKCQLEQISW----GVFDTLH 497 (606)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE-------ECSCCTTCTTCCEEECTTSCCCEECT----TTTTTCT
T ss_pred EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc-------hHHhhccCCCCCEEECCCCcCCccCh----hhhcccc
Confidence 77766654321 23556677777776655432210 11234556667777766654322111 1234556
Q ss_pred ccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655 368 NLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILK 402 (512)
Q Consensus 368 ~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~ 402 (512)
+|++|+|+.+.-.. ..+..+..+++|+.|++.
T Consensus 498 ~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~l~ 529 (606)
T 3vq2_A 498 RLQLLNMSHNNLLF---LDSSHYNQLYSLSTLDCS 529 (606)
T ss_dssp TCCEEECCSSCCSC---EEGGGTTTCTTCCEEECT
T ss_pred cCCEEECCCCcCCC---cCHHHccCCCcCCEEECC
Confidence 66666665431111 112334556666666664
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.85 E-value=3.9e-09 Score=110.94 Aligned_cols=221 Identities=17% Similarity=0.083 Sum_probs=141.8
Q ss_pred CCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccccchh
Q 043655 155 LPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQL 234 (512)
Q Consensus 155 lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l~~l 234 (512)
.|..+..+++|+.|++.++... .+|.. ...+ +|++|++.++.+..-.. ..+++|++|++.++.....+
T Consensus 274 ~~~~~~~l~~L~~L~l~~~~l~-~l~~~---~~~~-~L~~L~l~~n~~~~l~~-------~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLVSVTIE-RVKDF---SYNF-GWQHLELVNCKFGQFPT-------LKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp STTTTGGGTTCSEEEEESCEEC-SCCBC---CSCC-CCSEEEEESCBCSSCCB-------CBCSSCCEEEEESCBSCCBC
T ss_pred chhhhcCcCcccEEEecCccch-hhhhh---hccC-CccEEeeccCcccccCc-------ccccccCEEeCcCCcccccc
Confidence 3444456788888888874221 23321 2345 88888888887753211 36889999999887622111
Q ss_pred -cccccccceeeeccccCccceeE-----eccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC---ccccC
Q 043655 235 -KVGCRALEDLTLDNCIQLCGLDI-----FGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS---SSLEN 305 (512)
Q Consensus 235 -~~~cp~Le~L~l~~c~~l~~~~v-----~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~---~~l~~ 305 (512)
...+++|+.|++.+|........ ..++|+.|.+.+|..... .......++|++|.+.++.+... ..+.+
T Consensus 342 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 419 (570)
T 2z63_A 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM--SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419 (570)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE--EEEEETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred ccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc--cccccccCCCCEEEccCCccccccchhhhhc
Confidence 15789999999998863221111 127899999988754211 11123678999999998765433 34678
Q ss_pred cccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHH
Q 043655 306 LASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQG 385 (512)
Q Consensus 306 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 385 (512)
+++|+.++++.+...+. ....+..+++|+.|++..+.+..... +.....+++|+.|+|..+.-. + .
T Consensus 420 l~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~---p~~~~~l~~L~~L~l~~n~l~-~--~ 485 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVA--------FNGIFNGLSSLEVLKMAGNSFQENFL---PDIFTELRNLTFLDLSQCQLE-Q--L 485 (570)
T ss_dssp CTTCCEEECTTSCCEEC--------CTTTTTTCTTCCEEECTTCEEGGGEE---CSCCTTCTTCCEEECTTSCCC-E--E
T ss_pred CCCCCEEeCcCCccccc--------chhhhhcCCcCcEEECcCCcCccccc---hhhhhcccCCCEEECCCCccc-c--C
Confidence 89999999876643222 12346778999999998876432111 124557889999999754211 1 1
Q ss_pred HHHHHhhCCCCcEEEEEe
Q 043655 386 LACLFRSSPSIHTLILKI 403 (512)
Q Consensus 386 l~~~L~~cp~Le~L~l~~ 403 (512)
.+..+..+|+|++|++..
T Consensus 486 ~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 486 SPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp CTTTTTTCTTCCEEECCS
T ss_pred ChhhhhcccCCCEEeCCC
Confidence 134467899999999875
No 32
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.85 E-value=1.1e-09 Score=119.46 Aligned_cols=60 Identities=13% Similarity=-0.031 Sum_probs=33.4
Q ss_pred CCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655 338 LSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI 403 (512)
Q Consensus 338 l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~ 403 (512)
+++|+.|+++.+.+.... +.....+++|++|+|..+..... .-...+..+++|++|++..
T Consensus 293 ~~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~--ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAV----PPFFGSCSLLESLALSSNNFSGE--LPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp CTTCSEEECCSSEEEECC----CGGGGGCTTCCEEECCSSEEEEE--CCHHHHTTCTTCCEEECCS
T ss_pred cCcCCEEECcCCcCCCcc----chHHhcCCCccEEECCCCcccCc--CCHHHHhcCCCCCEEeCcC
Confidence 366666666655432111 12344667888888765321111 0123467889999998864
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.84 E-value=1e-09 Score=112.82 Aligned_cols=240 Identities=15% Similarity=0.120 Sum_probs=107.8
Q ss_pred CCceeEEEeccCCCCCCCccee-ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655 139 NVEELDIEVATDDYFNLPRCVI-TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF 217 (512)
Q Consensus 139 ~v~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 217 (512)
+++.|++... ....+|...+ .+++|++|+|++|... .+++. ....+++|++|+|+++.+..... ..+ ..+
T Consensus 81 ~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~--~~l 151 (477)
T 2id5_A 81 NLRTLGLRSN--RLKLIPLGVFTGLSNLTKLDISENKIV-ILLDY--MFQDLYNLKSLEVGDNDLVYISH--RAF--SGL 151 (477)
T ss_dssp TCCEEECCSS--CCCSCCTTSSTTCTTCCEEECTTSCCC-EECTT--TTTTCTTCCEEEECCTTCCEECT--TSS--TTC
T ss_pred cCCEEECCCC--cCCccCcccccCCCCCCEEECCCCccc-cCChh--HccccccCCEEECCCCccceeCh--hhc--cCC
Confidence 4555554322 2233444333 4566666666664221 11111 12346666666666554432110 001 256
Q ss_pred cccceecccccc--cc-chhcccccccceeeeccccCccc--eeE-eccCcceEEEeeeccccCCCceEEEeCCCcceEE
Q 043655 218 PHLKKLDLDACY--GL-KQLKVGCRALEDLTLDNCIQLCG--LDI-FGTKLERLRVASCFDAYCDKSWVKIDASKLKVLN 291 (512)
Q Consensus 218 p~L~~L~L~~~~--~l-~~l~~~cp~Le~L~l~~c~~l~~--~~v-~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~ 291 (512)
++|++|+|.++. .+ ...+..+++|+.|++.++..... ..+ ..++|+.|.+.+|........ .....++|++|.
T Consensus 152 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~ 230 (477)
T 2id5_A 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP-NCLYGLNLTSLS 230 (477)
T ss_dssp TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT-TTTTTCCCSEEE
T ss_pred CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc-ccccCccccEEE
Confidence 666666666654 11 12344566666666666542110 011 125666666665532210000 001123566666
Q ss_pred eeccccCCCc--cccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccccccccccc
Q 043655 292 WEYNAITASS--SLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNL 369 (512)
Q Consensus 292 ~~~~~~~~~~--~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L 369 (512)
++++.+.... .+.++++|+.++++.+...... ...+..+++|+.|++..+.+..+.. ..+..+++|
T Consensus 231 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L 298 (477)
T 2id5_A 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE--------GSMLHELLRLQEIQLVGGQLAVVEP----YAFRGLNYL 298 (477)
T ss_dssp EESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC--------TTSCTTCTTCCEEECCSSCCSEECT----TTBTTCTTC
T ss_pred CcCCcccccCHHHhcCccccCeeECCCCcCCccC--------hhhccccccCCEEECCCCccceECH----HHhcCcccC
Confidence 6665543322 2455666666666544322110 1124455666666666554322211 133355666
Q ss_pred ceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655 370 KSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI 403 (512)
Q Consensus 370 ~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~ 403 (512)
+.|+|..+.-. . .....+..+++|+.|++..
T Consensus 299 ~~L~L~~N~l~-~--~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 299 RVLNVSGNQLT-T--LEESVFHSVGNLETLILDS 329 (477)
T ss_dssp CEEECCSSCCS-C--CCGGGBSCGGGCCEEECCS
T ss_pred CEEECCCCcCc-e--eCHhHcCCCcccCEEEccC
Confidence 66666543111 0 0112345566666666643
No 34
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.84 E-value=5.4e-09 Score=100.83 Aligned_cols=162 Identities=21% Similarity=0.149 Sum_probs=108.6
Q ss_pred cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF 217 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 217 (512)
.++++|++.... ...+| .+..+++|++|+|++|... .+++ ...+++|++|+|+++.+.+...+ ..+
T Consensus 41 ~~L~~L~l~~~~--i~~l~-~~~~l~~L~~L~L~~n~i~-~~~~----~~~l~~L~~L~L~~n~l~~~~~~------~~l 106 (308)
T 1h6u_A 41 DGITTLSAFGTG--VTTIE-GVQYLNNLIGLELKDNQIT-DLAP----LKNLTKITELELSGNPLKNVSAI------AGL 106 (308)
T ss_dssp HTCCEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCC-CCGG----GTTCCSCCEEECCSCCCSCCGGG------TTC
T ss_pred CCcCEEEeeCCC--ccCch-hhhccCCCCEEEccCCcCC-CChh----HccCCCCCEEEccCCcCCCchhh------cCC
Confidence 577877775332 23344 3557899999999985211 2222 45789999999999988764333 478
Q ss_pred cccceecccccc--ccchhcccccccceeeeccccCccceeEe-ccCcceEEEeeeccccCCCceEEEeCCCcceEEeec
Q 043655 218 PHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLDIF-GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEY 294 (512)
Q Consensus 218 p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~v~-~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~ 294 (512)
++|+.|+|.++. .+.. +..+++|+.|++.+|.......+. .++|+.|.+.+|..... .. ....++|+.|.+++
T Consensus 107 ~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 107 QSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TP-LANLSKLTTLKADD 182 (308)
T ss_dssp TTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCS
T ss_pred CCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCC--hh-hcCCCCCCEEECCC
Confidence 999999999886 4443 567899999999998632211122 27899999988754321 11 12568999999998
Q ss_pred cccCCCccccCcccceeeEEeeE
Q 043655 295 NAITASSSLENLASLHEASVGFI 317 (512)
Q Consensus 295 ~~~~~~~~l~~~~~L~~l~l~~~ 317 (512)
+.+.....+..+++|+.++++.+
T Consensus 183 n~l~~~~~l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 183 NKISDISPLASLPNLIEVHLKNN 205 (308)
T ss_dssp SCCCCCGGGGGCTTCCEEECTTS
T ss_pred CccCcChhhcCCCCCCEEEccCC
Confidence 87654444556666666666544
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.83 E-value=1.3e-09 Score=115.51 Aligned_cols=217 Identities=16% Similarity=0.097 Sum_probs=147.9
Q ss_pred eeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccccch-hccc
Q 043655 159 VITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQ-LKVG 237 (512)
Q Consensus 159 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l~~-l~~~ 237 (512)
+..+++|+.|++.++.. ..++ ....+++|++|+++++.+.. +..+ .+|+|++|++.++..+.. -...
T Consensus 281 ~~~l~~L~~L~l~~~~~-~~l~----~l~~~~~L~~L~l~~n~l~~---lp~~----~l~~L~~L~l~~n~~~~~~~~~~ 348 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSI-KYLE----DVPKHFKWQSLSIIRCQLKQ---FPTL----DLPFLKSLTLTMNKGSISFKKVA 348 (606)
T ss_dssp CGGGTTCSEEEEESCCC-CCCC----CCCTTCCCSEEEEESCCCSS---CCCC----CCSSCCEEEEESCSSCEECCCCC
T ss_pred cccCCCCCEEEecCccc-hhhh----hccccccCCEEEcccccCcc---cccC----CCCccceeeccCCcCccchhhcc
Confidence 55789999999998532 1232 23468899999999998843 2222 689999999999863332 3447
Q ss_pred ccccceeeeccccCcccee------EeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC---ccccCccc
Q 043655 238 CRALEDLTLDNCIQLCGLD------IFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS---SSLENLAS 308 (512)
Q Consensus 238 cp~Le~L~l~~c~~l~~~~------v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~---~~l~~~~~ 308 (512)
+++|+.|++.+|.. .... ...++|+.|.+.+|...... ......++|+.|.+.++.+... ..+.++++
T Consensus 349 l~~L~~L~ls~n~l-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 349 LPSLSYLDLSRNAL-SFSGCCSYSDLGTNSLRHLDLSFNGAIIMS--ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CTTCCEEECCSSCE-EEEEECCHHHHCCSCCCEEECCSCSEEEEC--CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred CCCCCEEECcCCcc-CCCcchhhhhccCCcccEeECCCCccccch--hhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 89999999999863 2221 12379999999887532110 1111468999999998876443 35678999
Q ss_pred ceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHH
Q 043655 309 LHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLAC 388 (512)
Q Consensus 309 L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ 388 (512)
|+.++++.+...... ...+..+++|+.|+++.+.+..... ......+++|+.|+|..+.-.. ..+.
T Consensus 426 L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~Ls~n~l~~---~~~~ 491 (606)
T 3vq2_A 426 LLYLDISYTNTKIDF--------DGIFLGLTSLNTLKMAGNSFKDNTL---SNVFANTTNLTFLDLSKCQLEQ---ISWG 491 (606)
T ss_dssp CCEEECTTSCCEECC--------TTTTTTCTTCCEEECTTCEEGGGEE---CSCCTTCTTCCEEECTTSCCCE---ECTT
T ss_pred CCEEECcCCCCCccc--------hhhhcCCCCCCEEECCCCcCCCcch---HHhhccCCCCCEEECCCCcCCc---cChh
Confidence 999999876543221 2346788999999999876543111 1245578899999997642211 1233
Q ss_pred HHhhCCCCcEEEEEee
Q 043655 389 LFRSSPSIHTLILKII 404 (512)
Q Consensus 389 ~L~~cp~Le~L~l~~~ 404 (512)
.+..+++|+.|++...
T Consensus 492 ~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 492 VFDTLHRLQLLNMSHN 507 (606)
T ss_dssp TTTTCTTCCEEECCSS
T ss_pred hhcccccCCEEECCCC
Confidence 4678999999999754
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.82 E-value=3.5e-09 Score=103.25 Aligned_cols=189 Identities=20% Similarity=0.177 Sum_probs=82.8
Q ss_pred ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--cc-chhccc
Q 043655 161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GL-KQLKVG 237 (512)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l-~~l~~~ 237 (512)
.+++|++|+|++|... .+.+.. ...+++|++|+|+++.+..-.. .-+++|++|++.++. .+ ...+..
T Consensus 74 ~l~~L~~L~L~~n~l~-~~~~~~--~~~l~~L~~L~Ls~n~l~~l~~-------~~~~~L~~L~l~~n~l~~~~~~~~~~ 143 (330)
T 1xku_A 74 NLKNLHTLILINNKIS-KISPGA--FAPLVKLERLYLSKNQLKELPE-------KMPKTLQELRVHENEITKVRKSVFNG 143 (330)
T ss_dssp TCTTCCEEECCSSCCC-CBCTTT--TTTCTTCCEEECCSSCCSBCCS-------SCCTTCCEEECCSSCCCBBCHHHHTT
T ss_pred cCCCCCEEECCCCcCC-eeCHHH--hcCCCCCCEEECCCCcCCccCh-------hhcccccEEECCCCcccccCHhHhcC
Confidence 4566666666653211 111111 2345666666666555442110 123566666666553 11 122445
Q ss_pred ccccceeeeccccCcc-ce---eEe-ccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccccCcccce
Q 043655 238 CRALEDLTLDNCIQLC-GL---DIF-GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLENLASLH 310 (512)
Q Consensus 238 cp~Le~L~l~~c~~l~-~~---~v~-~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~~~~~L~ 310 (512)
+++|+.|++.++.... .. .+. .++|+.|.+.++...... .. ..++|++|.++++.+... ..+.++++|+
T Consensus 144 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 219 (330)
T 1xku_A 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP-QG---LPPSLTELHLDGNKITKVDAASLKGLNNLA 219 (330)
T ss_dssp CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC-SS---CCTTCSEEECTTSCCCEECTGGGTTCTTCC
T ss_pred CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC-cc---ccccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 6666666666654211 00 011 145666666554322111 00 015566666655543221 2344555555
Q ss_pred eeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEe
Q 043655 311 EASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHT 376 (512)
Q Consensus 311 ~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 376 (512)
.++++.+...+.. ...+..+++|+.|+++.+.+..+. .....+++|++|+|..
T Consensus 220 ~L~Ls~n~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~lp-----~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 220 KLGLSFNSISAVD--------NGSLANTPHLRELHLNNNKLVKVP-----GGLADHKYIQVVYLHN 272 (330)
T ss_dssp EEECCSSCCCEEC--------TTTGGGSTTCCEEECCSSCCSSCC-----TTTTTCSSCCEEECCS
T ss_pred EEECCCCcCceeC--------hhhccCCCCCCEEECCCCcCccCC-----hhhccCCCcCEEECCC
Confidence 5555543321110 012344555555555555433211 1223445555555543
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.82 E-value=3.2e-09 Score=106.13 Aligned_cols=282 Identities=15% Similarity=0.127 Sum_probs=164.2
Q ss_pred cCCceeEEEeccCCCCCCCccee-ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVI-TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS 216 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 216 (512)
.+++.+++.... ...+|..++ .+++|++|+|+++.. ..+++. ....+++|++|+|+++.+.+... ..+ ..
T Consensus 45 ~~l~~l~l~~~~--l~~l~~~~~~~l~~L~~L~L~~n~i-~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~--~~~--~~ 115 (390)
T 3o6n_A 45 NNQKIVTFKNST--MRKLPAALLDSFRQVELLNLNDLQI-EEIDTY--AFAYAHTIQKLYMGFNAIRYLPP--HVF--QN 115 (390)
T ss_dssp CCCSEEEEESCE--ESEECTHHHHHCCCCSEEECTTSCC-CEECTT--TTTTCTTCCEEECCSSCCCCCCT--TTT--TT
T ss_pred CCceEEEecCCc--hhhCChhHhcccccCcEEECCCCcc-cccChh--hccCCCCcCEEECCCCCCCcCCH--HHh--cC
Confidence 567777776332 345676655 589999999998532 133332 23579999999999988765311 112 47
Q ss_pred Ccccceecccccc--ccc-hhcccccccceeeeccccCcccee---Ee-ccCcceEEEeeeccccCCCce------EE--
Q 043655 217 FPHLKKLDLDACY--GLK-QLKVGCRALEDLTLDNCIQLCGLD---IF-GTKLERLRVASCFDAYCDKSW------VK-- 281 (512)
Q Consensus 217 ~p~L~~L~L~~~~--~l~-~l~~~cp~Le~L~l~~c~~l~~~~---v~-~~~L~~L~l~~c~~~~~~~~~------~~-- 281 (512)
+++|++|+|.++. .+. .++..+++|+.|++.++.. ..+. +. .++|+.|.+.++......... +.
T Consensus 116 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVS 194 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECC
T ss_pred CCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCcc-CccChhhccCCCCCCEEECCCCcCCccccccccccceeecc
Confidence 8999999999886 332 3356789999999999863 2221 22 278999999887543211110 00
Q ss_pred -------EeCCCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhh
Q 043655 282 -------IDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEIL 354 (512)
Q Consensus 282 -------i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~ 354 (512)
-..++|+.|.++++.+... .....++|+.++++.+...+. ..+..+++|+.|+++.+.+...
T Consensus 195 ~n~l~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~L~l~~n~l~~~----------~~l~~l~~L~~L~Ls~n~l~~~ 263 (390)
T 3o6n_A 195 YNLLSTLAIPIAVEELDASHNSINVV-RGPVNVELTILKLQHNNLTDT----------AWLLNYPGLVEVDLSYNELEKI 263 (390)
T ss_dssp SSCCSEEECCSSCSEEECCSSCCCEE-ECCCCSSCCEEECCSSCCCCC----------GGGGGCTTCSEEECCSSCCCEE
T ss_pred cccccccCCCCcceEEECCCCeeeec-cccccccccEEECCCCCCccc----------HHHcCCCCccEEECCCCcCCCc
Confidence 1123444455444433211 122345667766665543221 2467788888888887764332
Q ss_pred cccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEeecccchhhhcccccccCccCccchhhhhccc
Q 043655 355 SNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKIINDYKIQRRQWNRDLWDMYTSEEEQYWQSQS 434 (512)
Q Consensus 355 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 434 (512)
.. .....+++|++|+|..+.-. .+......+|+|+.|++....-.. .+..
T Consensus 264 ~~----~~~~~l~~L~~L~L~~n~l~----~~~~~~~~l~~L~~L~L~~n~l~~----------------~~~~------ 313 (390)
T 3o6n_A 264 MY----HPFVKMQRLERLYISNNRLV----ALNLYGQPIPTLKVLDLSHNHLLH----------------VERN------ 313 (390)
T ss_dssp ES----GGGTTCSSCCEEECCSSCCC----EEECSSSCCTTCCEEECCSSCCCC----------------CGGG------
T ss_pred Ch----hHccccccCCEEECCCCcCc----ccCcccCCCCCCCEEECCCCccee----------------cCcc------
Confidence 11 23446778888888754211 112223567888888886421100 0000
Q ss_pred cCchhhhcCccEEEEeeeccchhHHHHHHHHHhcCccccceEEEec
Q 043655 435 QTLKPFLNNLNVVEIHGFLECENEVSLAKFLLKHGKALQEMTLCTG 480 (512)
Q Consensus 435 ~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~L~~m~i~~~ 480 (512)
-..+.+|+++.+.+-.-..-. +...+.|+.+.+...
T Consensus 314 ---~~~l~~L~~L~L~~N~i~~~~-------~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 314 ---QPQFDRLENLYLDHNSIVTLK-------LSTHHTLKNLTLSHN 349 (390)
T ss_dssp ---HHHHTTCSEEECCSSCCCCCC-------CCTTCCCSEEECCSS
T ss_pred ---ccccCcCCEEECCCCccceeC-------chhhccCCEEEcCCC
Confidence 012577888887753322211 456678888777653
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.81 E-value=5.4e-09 Score=101.10 Aligned_cols=125 Identities=15% Similarity=0.145 Sum_probs=75.2
Q ss_pred CCceeEEEeccC-CCCCCCcceeccCCccEEEEec-ccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655 139 NVEELDIEVATD-DYFNLPRCVITSDSLRVFKLRS-RYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS 216 (512)
Q Consensus 139 ~v~~L~l~~~~~-~~~~lp~~l~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 216 (512)
.|++|++....- +...+|..+..+++|++|+|++ +.....+|. ....+++|++|+|+++.+.+. +...+ ..
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~---~l~~l~~L~~L~Ls~n~l~~~--~p~~~--~~ 123 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP---AIAKLTQLHYLYITHTNVSGA--IPDFL--SQ 123 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG---GGGGCTTCSEEEEEEECCEEE--CCGGG--GG
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh---hHhcCCCCCEEECcCCeeCCc--CCHHH--hC
Confidence 455666653321 1125677777888999999984 322112322 134688999999998887632 11111 35
Q ss_pred Ccccceecccccc---ccchhcccccccceeeeccccCcccee--Ee-c-cCcceEEEeee
Q 043655 217 FPHLKKLDLDACY---GLKQLKVGCRALEDLTLDNCIQLCGLD--IF-G-TKLERLRVASC 270 (512)
Q Consensus 217 ~p~L~~L~L~~~~---~l~~l~~~cp~Le~L~l~~c~~l~~~~--v~-~-~~L~~L~l~~c 270 (512)
+++|++|+|.++. .+...+..+++|+.|++.++.....+. +. . ++|+.|.+.++
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence 7888999888875 244455678888888888876321111 11 1 26667766664
No 39
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.81 E-value=1.8e-10 Score=112.58 Aligned_cols=129 Identities=19% Similarity=0.180 Sum_probs=84.8
Q ss_pred cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF 217 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 217 (512)
.++++|++..+.-....+|..+..+++|++|+|++|...-..+. ....+++|++|+|++|....+.++..++ ..|
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~---~l~~~~~L~~L~L~~~~~l~~~~l~~~~--~~~ 167 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN---TLAKNSNLVRLNLSGCSGFSEFALQTLL--SSC 167 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH---HHTTCTTCSEEECTTCBSCCHHHHHHHH--HHC
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH---HHhcCCCCCEEECCCCCCCCHHHHHHHH--hcC
Confidence 67888887643211112444455789999999998532111111 1235999999999998433333344444 379
Q ss_pred cccceeccccc-c----ccchhccccc-ccceeeecccc-CccceeE-----eccCcceEEEeeec
Q 043655 218 PHLKKLDLDAC-Y----GLKQLKVGCR-ALEDLTLDNCI-QLCGLDI-----FGTKLERLRVASCF 271 (512)
Q Consensus 218 p~L~~L~L~~~-~----~l~~l~~~cp-~Le~L~l~~c~-~l~~~~v-----~~~~L~~L~l~~c~ 271 (512)
|+|++|++.+| . ++..++..+| +|+.|++.+|. .+.+..+ ..++|++|.+.+|.
T Consensus 168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 99999999999 3 2456677899 99999999996 3432211 23677777777765
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.81 E-value=1.2e-08 Score=106.75 Aligned_cols=235 Identities=16% Similarity=0.109 Sum_probs=146.8
Q ss_pred CCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc-
Q 043655 151 DYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY- 229 (512)
Q Consensus 151 ~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~- 229 (512)
....+|..++ ++|++|+|++|... .+++.. ...+++|++|+|+++.+.+... ..+ ..+++|++|+|.++.
T Consensus 16 ~l~~ip~~~~--~~L~~L~Ls~n~l~-~~~~~~--~~~l~~L~~L~Ls~n~i~~~~~--~~~--~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 16 SFTSIPSGLT--AAMKSLDLSFNKIT-YIGHGD--LRACANLQVLILKSSRINTIEG--DAF--YSLGSLEHLDLSDNHL 86 (549)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSCCC-EECSST--TSSCTTCCEEECTTSCCCEECT--TTT--TTCTTCCEEECTTSCC
T ss_pred ccccccccCC--CCccEEECcCCccC-ccChhh--hhcCCcccEEECCCCCcCccCh--hhc--cccccCCEEECCCCcc
Confidence 3456666553 68999999985322 232222 3568899999999887765211 112 468899999998885
Q ss_pred -cc-chhcccccccceeeeccccCcccee----Ee-ccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCC--C
Q 043655 230 -GL-KQLKVGCRALEDLTLDNCIQLCGLD----IF-GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITA--S 300 (512)
Q Consensus 230 -~l-~~l~~~cp~Le~L~l~~c~~l~~~~----v~-~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~--~ 300 (512)
++ ...+..+++|++|++.+|.. ..+. +. .++|++|.+.++..............++|++|.+.++.+.. .
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPY-QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CccCHHHhccCCCCcEEECCCCcc-cccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 22 23356789999999998853 2211 11 27899999988752110000001135789999998876543 2
Q ss_pred ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeecc-
Q 043655 301 SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFN- 379 (512)
Q Consensus 301 ~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~- 379 (512)
..++.+++|++++++...... ....++..+++++.|+++...+....... ......+++|++|.+.....
T Consensus 166 ~~l~~l~~L~~L~l~~n~~~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~L~~L~l~~n~l~ 236 (549)
T 2z81_A 166 QSLKSIRDIHHLTLHLSESAF--------LLEIFADILSSVRYLELRDTNLARFQFSP-LPVDEVSSPMKKLAFRGSVLT 236 (549)
T ss_dssp TTTTTCSEEEEEEEECSBSTT--------HHHHHHHSTTTBSEEEEESCBCTTCCCCC-CSSCCCCCCCCEEEEESCEEE
T ss_pred hhhhccccCceEecccCcccc--------cchhhHhhcccccEEEccCCccccccccc-cchhhhhhcccceeccccccc
Confidence 456788899999887654311 11234567899999999987654432111 11233577899999976422
Q ss_pred CCcHHHHHHHHhhCCCCcEEEEEee
Q 043655 380 KHNVQGLACLFRSSPSIHTLILKII 404 (512)
Q Consensus 380 ~~~~~~l~~~L~~cp~Le~L~l~~~ 404 (512)
......+...++.+++|+.|.+...
T Consensus 237 ~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 237 DESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp HHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred hhHHHHHHHHhhhhccccccccccc
Confidence 2233455666778888888888643
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.80 E-value=9.7e-09 Score=104.74 Aligned_cols=138 Identities=18% Similarity=0.119 Sum_probs=65.4
Q ss_pred cCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhcccccccceeeeccccCccceeEec-cCcce
Q 043655 188 GFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLDIFG-TKLER 264 (512)
Q Consensus 188 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~-~~L~~ 264 (512)
.+++|++|+|+++.+.+-+ + ..+++|+.|++.++. ++. +..+++|++|++.+|..+..+.+.. ++|+.
T Consensus 104 ~l~~L~~L~L~~N~l~~l~-~------~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~ 174 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKLD-V------SQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTT 174 (457)
T ss_dssp TCTTCCEEECCSSCCSCCC-C------TTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCE
T ss_pred CCCcCCEEECCCCcCCeec-C------CCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCcCCE
Confidence 3555555555555443321 1 245555555555543 221 3345555555555554443332222 45555
Q ss_pred EEEeeeccccCCCceEEE-eCCCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccE
Q 043655 265 LRVASCFDAYCDKSWVKI-DASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARS 343 (512)
Q Consensus 265 L~l~~c~~~~~~~~~~~i-~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~ 343 (512)
|.+.++.... +.+ ..++|+.|.++++.+... .++.+++|+.++++.+...+ +. +..+++++.
T Consensus 175 L~ls~n~l~~-----l~l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~---------ip--~~~l~~L~~ 237 (457)
T 3bz5_A 175 LDCSFNKITE-----LDVSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTE---------ID--VTPLTQLTY 237 (457)
T ss_dssp EECCSSCCCC-----CCCTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSC---------CC--CTTCTTCSE
T ss_pred EECCCCccce-----eccccCCCCCEEECcCCcCCee-ccccCCCCCEEECcCCcccc---------cC--ccccCCCCE
Confidence 5555543221 111 345566666665554332 35556666666665443221 01 445566666
Q ss_pred eeecchhh
Q 043655 344 LTLESPCI 351 (512)
Q Consensus 344 L~l~~~~~ 351 (512)
|+++.+.+
T Consensus 238 L~l~~N~l 245 (457)
T 3bz5_A 238 FDCSVNPL 245 (457)
T ss_dssp EECCSSCC
T ss_pred EEeeCCcC
Confidence 66665543
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.78 E-value=2e-08 Score=103.12 Aligned_cols=221 Identities=16% Similarity=0.105 Sum_probs=106.4
Q ss_pred eeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--c-cchhc
Q 043655 159 VITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--G-LKQLK 235 (512)
Q Consensus 159 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~-l~~l~ 235 (512)
+..+++|++|+|++|... .+.+.. ...+++|++|+|+++.+..-.. ..+ ..+++|++|+|.++. . ....+
T Consensus 52 ~~~l~~L~~L~L~~n~i~-~~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~--~~l~~L~~L~Ls~n~i~~~~~~~~ 124 (477)
T 2id5_A 52 FASFPHLEELELNENIVS-AVEPGA--FNNLFNLRTLGLRSNRLKLIPL--GVF--TGLSNLTKLDISENKIVILLDYMF 124 (477)
T ss_dssp TTTCTTCCEEECTTSCCC-EECTTT--TTTCTTCCEEECCSSCCCSCCT--TSS--TTCTTCCEEECTTSCCCEECTTTT
T ss_pred ccCCCCCCEEECCCCccC-EeChhh--hhCCccCCEEECCCCcCCccCc--ccc--cCCCCCCEEECCCCccccCChhHc
Confidence 335667777777664211 122211 2356677777776665543210 011 256777777776664 1 12334
Q ss_pred ccccccceeeeccccCcccee---Ee-ccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccccCcccc
Q 043655 236 VGCRALEDLTLDNCIQLCGLD---IF-GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLENLASL 309 (512)
Q Consensus 236 ~~cp~Le~L~l~~c~~l~~~~---v~-~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~~~~~L 309 (512)
..+++|+.|++.++.. ..+. +. .++|+.|.+.+|...... .......++|+.|.+.++.+... ..+..+++|
T Consensus 125 ~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L 202 (477)
T 2id5_A 125 QDLYNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202 (477)
T ss_dssp TTCTTCCEEEECCTTC-CEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTC
T ss_pred cccccCCEEECCCCcc-ceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcCcEeChhhcccCccc
Confidence 5667777777766542 1111 11 256777777665332110 00011346677776666544221 235566667
Q ss_pred eeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHH
Q 043655 310 HEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACL 389 (512)
Q Consensus 310 ~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~ 389 (512)
+.++++.+...+... .......+|+.|+++.+.+..+.. .....+++|+.|+|+.+.-. . .....
T Consensus 203 ~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~-~--~~~~~ 267 (477)
T 2id5_A 203 KVLEISHWPYLDTMT--------PNCLYGLNLTSLSITHCNLTAVPY----LAVRHLVYLRFLNLSYNPIS-T--IEGSM 267 (477)
T ss_dssp CEEEEECCTTCCEEC--------TTTTTTCCCSEEEEESSCCCSCCH----HHHTTCTTCCEEECCSSCCC-E--ECTTS
T ss_pred ceeeCCCCccccccC--------cccccCccccEEECcCCcccccCH----HHhcCccccCeeECCCCcCC-c--cChhh
Confidence 766666432211100 001112356677776654332211 12335667777777643211 0 01123
Q ss_pred HhhCCCCcEEEEEe
Q 043655 390 FRSSPSIHTLILKI 403 (512)
Q Consensus 390 L~~cp~Le~L~l~~ 403 (512)
+..+++|+.|.+..
T Consensus 268 ~~~l~~L~~L~L~~ 281 (477)
T 2id5_A 268 LHELLRLQEIQLVG 281 (477)
T ss_dssp CTTCTTCCEEECCS
T ss_pred ccccccCCEEECCC
Confidence 45677777777754
No 43
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.76 E-value=2.7e-09 Score=113.05 Aligned_cols=244 Identities=18% Similarity=0.104 Sum_probs=144.0
Q ss_pred cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF 217 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 217 (512)
.+++.|++... ....+|..+..+++|++|+|++|... ..++. ....+++|++|+|+++.+...-.... + ..+
T Consensus 278 ~~L~~L~l~~n--~l~~lp~~l~~l~~L~~L~l~~n~l~-~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~-~--~~l 349 (606)
T 3t6q_A 278 SGLQELDLTAT--HLSELPSGLVGLSTLKKLVLSANKFE-NLCQI--SASNFPSLTHLSIKGNTKRLELGTGC-L--ENL 349 (606)
T ss_dssp TTCSEEECTTS--CCSCCCSSCCSCTTCCEEECTTCCCS-BGGGG--CGGGCTTCSEEECCSCSSCCBCCSST-T--TTC
T ss_pred cCCCEEeccCC--ccCCCChhhcccccCCEEECccCCcC-cCchh--hhhccCcCCEEECCCCCcccccchhh-h--hcc
Confidence 46666666533 34478888888999999999985322 22221 23468999999999886653211111 1 368
Q ss_pred cccceecccccc--cc---chhcccccccceeeeccccCccce--eE-eccCcceEEEeeeccccCCCceEEEeCCCcce
Q 043655 218 PHLKKLDLDACY--GL---KQLKVGCRALEDLTLDNCIQLCGL--DI-FGTKLERLRVASCFDAYCDKSWVKIDASKLKV 289 (512)
Q Consensus 218 p~L~~L~L~~~~--~l---~~l~~~cp~Le~L~l~~c~~l~~~--~v-~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~ 289 (512)
++|+.|++.++. ++ ...+..+++|+.|++.+|...... .+ ..++|+.|.+.++..............++|++
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 429 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence 999999998876 22 234567889999999888532111 11 12788888888764432111111114578888
Q ss_pred EEeeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccccccccc
Q 043655 290 LNWEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFT 367 (512)
Q Consensus 290 L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~ 367 (512)
|.++++.+... ..++++++|+.++++.+...+... .....+..+++|+.|+++.+.+..+.. .....++
T Consensus 430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~ 500 (606)
T 3t6q_A 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI-----QKTNSLQTLGRLEILVLSFCDLSSIDQ----HAFTSLK 500 (606)
T ss_dssp EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE-----CSSCGGGGCTTCCEEECTTSCCCEECT----TTTTTCT
T ss_pred EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc-----ccchhhccCCCccEEECCCCccCccCh----hhhcccc
Confidence 88888765432 346678888888887654322100 001236677888888887765433211 2344667
Q ss_pred ccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655 368 NLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILK 402 (512)
Q Consensus 368 ~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~ 402 (512)
+|++|+|+.+.-.. ..+..+..+++| .|++.
T Consensus 501 ~L~~L~Ls~N~l~~---~~~~~l~~l~~L-~L~L~ 531 (606)
T 3t6q_A 501 MMNHVDLSHNRLTS---SSIEALSHLKGI-YLNLA 531 (606)
T ss_dssp TCCEEECCSSCCCG---GGGGGGTTCCSC-EEECC
T ss_pred CCCEEECCCCccCc---CChhHhCccccc-EEECc
Confidence 78888776532111 123344556666 55554
No 44
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.76 E-value=1.3e-08 Score=96.93 Aligned_cols=117 Identities=20% Similarity=0.169 Sum_probs=63.7
Q ss_pred EEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceec
Q 043655 145 IEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLD 224 (512)
Q Consensus 145 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~ 224 (512)
+.........+|..+ .++|++|+|+++... .+++.. ...+++|++|+|+++.+.+.. ...+ ..+++|++|+
T Consensus 16 ~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~-~~~~~~--~~~~~~L~~L~l~~n~l~~~~--~~~~--~~l~~L~~L~ 86 (285)
T 1ozn_A 16 TSCPQQGLQAVPVGI--PAASQRIFLHGNRIS-HVPAAS--FRACRNLTILWLHSNVLARID--AAAF--TGLALLEQLD 86 (285)
T ss_dssp EECCSSCCSSCCTTC--CTTCSEEECTTSCCC-EECTTT--TTTCTTCCEEECCSSCCCEEC--TTTT--TTCTTCCEEE
T ss_pred EEcCcCCcccCCcCC--CCCceEEEeeCCcCC-ccCHHH--cccCCCCCEEECCCCccceeC--Hhhc--CCccCCCEEe
Confidence 333333344555433 357888888874221 233221 246788888888877665421 1111 3578888888
Q ss_pred cccccccc----hhcccccccceeeeccccCcccee--Ee-ccCcceEEEeee
Q 043655 225 LDACYGLK----QLKVGCRALEDLTLDNCIQLCGLD--IF-GTKLERLRVASC 270 (512)
Q Consensus 225 L~~~~~l~----~l~~~cp~Le~L~l~~c~~l~~~~--v~-~~~L~~L~l~~c 270 (512)
|.++..+. ..+..+++|++|++.++....... +. .++|++|.+.++
T Consensus 87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 139 (285)
T 1ozn_A 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139 (285)
T ss_dssp CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC
Confidence 87775222 334567788888887775221100 11 145555655554
No 45
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.75 E-value=7e-09 Score=98.81 Aligned_cols=195 Identities=17% Similarity=0.101 Sum_probs=133.6
Q ss_pred CcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--cc-chhcccccccceeeeccccCccceeEe----ccC
Q 043655 189 FRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GL-KQLKVGCRALEDLTLDNCIQLCGLDIF----GTK 261 (512)
Q Consensus 189 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l-~~l~~~cp~Le~L~l~~c~~l~~~~v~----~~~ 261 (512)
.++|++|+|+++.+.+... ..+ ..+++|++|+|.++. ++ ...+..+++|+.|++.++..+..+... .++
T Consensus 31 ~~~l~~L~l~~n~i~~~~~--~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~ 106 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPA--ASF--RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106 (285)
T ss_dssp CTTCSEEECTTSCCCEECT--TTT--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred CCCceEEEeeCCcCCccCH--HHc--ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence 6799999999888765221 112 478999999999875 22 334667899999999999755444221 279
Q ss_pred cceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCCc--cccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCC
Q 043655 262 LERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASS--SLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLS 339 (512)
Q Consensus 262 L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~--~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~ 339 (512)
|++|.+.++........ ..-..++|++|.++++.+.... .+.++++|+.++++.+...+.. ...+..++
T Consensus 107 L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~ 177 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP--------ERAFRGLH 177 (285)
T ss_dssp CCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC--------TTTTTTCT
T ss_pred CCEEECCCCcCCEECHh-HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC--------HHHhcCcc
Confidence 99999988754321111 1114689999999988765432 3678999999999866432211 12366789
Q ss_pred cccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655 340 HARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI 403 (512)
Q Consensus 340 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~ 403 (512)
+|+.|+++.+.+.... ......+++|++|+|..+.-. + .....+..+|+|+.|++..
T Consensus 178 ~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~-~--~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHVH----PHAFRDLGRLMTLYLFANNLS-A--LPTEALAPLRALQYLRLND 234 (285)
T ss_dssp TCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCS-C--CCHHHHTTCTTCCEEECCS
T ss_pred ccCEEECCCCcccccC----HhHccCcccccEeeCCCCcCC-c--CCHHHcccCcccCEEeccC
Confidence 9999999987653332 124557889999999764222 1 1235678999999999975
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.74 E-value=3.7e-09 Score=103.03 Aligned_cols=243 Identities=14% Similarity=0.086 Sum_probs=154.5
Q ss_pred cCCceeEEEeccCCCCCC-CcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655 138 HNVEELDIEVATDDYFNL-PRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS 216 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 216 (512)
.+++.|++.... ...+ |..+..+++|++|+|++|... .+|.. .+++|++|+++++.+.+.. ...+ ..
T Consensus 76 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~-----~~~~L~~L~l~~n~l~~~~--~~~~--~~ 143 (330)
T 1xku_A 76 KNLHTLILINNK--ISKISPGAFAPLVKLERLYLSKNQLK-ELPEK-----MPKTLQELRVHENEITKVR--KSVF--NG 143 (330)
T ss_dssp TTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCS-BCCSS-----CCTTCCEEECCSSCCCBBC--HHHH--TT
T ss_pred CCCCEEECCCCc--CCeeCHHHhcCCCCCCEEECCCCcCC-ccChh-----hcccccEEECCCCcccccC--HhHh--cC
Confidence 567777775332 2223 555667899999999985322 33322 2589999999998876532 1112 47
Q ss_pred Ccccceeccccccc-----cchhcccccccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEE
Q 043655 217 FPHLKKLDLDACYG-----LKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLN 291 (512)
Q Consensus 217 ~p~L~~L~L~~~~~-----l~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~ 291 (512)
+++|+.|++.++.- ....+..+++|+.|++.++.....-....++|++|.+.++......... ....++|++|.
T Consensus 144 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~ 222 (330)
T 1xku_A 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAAS-LKGLNNLAKLG 222 (330)
T ss_dssp CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGG-GTTCTTCCEEE
T ss_pred CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHH-hcCCCCCCEEE
Confidence 89999999998752 2234567899999999998632211111279999999887432111111 11468999999
Q ss_pred eeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccc--ccccccc
Q 043655 292 WEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYF--TNLHTFT 367 (512)
Q Consensus 292 ~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~--~~~~~~~ 367 (512)
++++.+... ..+..+++|+.++++.+.... +...+..+++++.|+++.+.+..+...... .......
T Consensus 223 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~ 293 (330)
T 1xku_A 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLVK---------VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293 (330)
T ss_dssp CCSSCCCEECTTTGGGSTTCCEEECCSSCCSS---------CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSC
T ss_pred CCCCcCceeChhhccCCCCCCEEECCCCcCcc---------CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccc
Confidence 998876433 247788999999998765431 122367789999999998876554432211 1222457
Q ss_pred ccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655 368 NLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI 403 (512)
Q Consensus 368 ~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~ 403 (512)
.++.|++...... .....+..+.++++|+.+++..
T Consensus 294 ~l~~l~l~~N~~~-~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 294 SYSGVSLFSNPVQ-YWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp CCSEEECCSSSSC-GGGSCGGGGTTCCCGGGEEC--
T ss_pred cccceEeecCccc-ccccCccccccccceeEEEecc
Confidence 8888888754221 1112234577888898887753
No 47
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.74 E-value=5.5e-09 Score=106.59 Aligned_cols=128 Identities=16% Similarity=0.108 Sum_probs=80.5
Q ss_pred cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF 217 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 217 (512)
++++.|++....-. ...|..+..+++|++|+|++|.....+++.. ..++++|++|+|+++.+.+.. ...+ ..+
T Consensus 30 ~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~--~~~l~~L~~L~Ls~n~l~~~~--~~~~--~~l 102 (455)
T 3v47_A 30 AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNT--FRGLSSLIILKLDYNQFLQLE--TGAF--NGL 102 (455)
T ss_dssp TTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTT--TTTCTTCCEEECTTCTTCEEC--TTTT--TTC
T ss_pred CccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECccc--ccccccCCEEeCCCCccCccC--hhhc--cCc
Confidence 56777777643211 1224455578899999998853332444322 346889999999887765421 1111 368
Q ss_pred cccceeccccccccc-----hhcccccccceeeeccccCcccee---E-eccCcceEEEeeecc
Q 043655 218 PHLKKLDLDACYGLK-----QLKVGCRALEDLTLDNCIQLCGLD---I-FGTKLERLRVASCFD 272 (512)
Q Consensus 218 p~L~~L~L~~~~~l~-----~l~~~cp~Le~L~l~~c~~l~~~~---v-~~~~L~~L~l~~c~~ 272 (512)
++|++|+|.++.--. ..+..+++|++|++.++....... + ..++|+.|.+.++..
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 899999998886211 225678899999999886432211 1 237889998887654
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.74 E-value=4e-09 Score=101.59 Aligned_cols=236 Identities=18% Similarity=0.130 Sum_probs=138.3
Q ss_pred CCceeEEEeccCCCCCCCccee-ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655 139 NVEELDIEVATDDYFNLPRCVI-TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF 217 (512)
Q Consensus 139 ~v~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 217 (512)
+++.|++.... ...+|...+ .+++|++|+|++|.... ..........+++|++|+|+++.+..-.. -+ ..+
T Consensus 29 ~l~~L~L~~n~--l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~---~~--~~l 100 (306)
T 2z66_A 29 SATRLELESNK--LQSLPHGVFDKLTQLTKLSLSSNGLSF-KGCCSQSDFGTTSLKYLDLSFNGVITMSS---NF--LGL 100 (306)
T ss_dssp TCCEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCE-EEEEEHHHHSCSCCCEEECCSCSEEEEEE---EE--ETC
T ss_pred CCCEEECCCCc--cCccCHhHhhccccCCEEECCCCccCc-ccCcccccccccccCEEECCCCccccChh---hc--CCC
Confidence 45666554322 335665544 67888999888742210 10000112357888999888877654211 11 368
Q ss_pred cccceecccccc--ccc--hhcccccccceeeeccccCcccee--E-eccCcceEEEeeeccccCCCceEEEeCCCcceE
Q 043655 218 PHLKKLDLDACY--GLK--QLKVGCRALEDLTLDNCIQLCGLD--I-FGTKLERLRVASCFDAYCDKSWVKIDASKLKVL 290 (512)
Q Consensus 218 p~L~~L~L~~~~--~l~--~l~~~cp~Le~L~l~~c~~l~~~~--v-~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L 290 (512)
++|++|++.++. .+. ..+..+++|+.|++.+|....... + ..++|+.|.+.++..............++|++|
T Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence 889999888875 332 345678889999988875321111 1 126888888877643210000111245789999
Q ss_pred EeeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccc-c
Q 043655 291 NWEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTF-T 367 (512)
Q Consensus 291 ~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~-~ 367 (512)
+++++.+... ..+.++++|+.++++.+...+... ..+..+++|+.|+++.+.+..... .....+ +
T Consensus 181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~~~~ 248 (306)
T 2z66_A 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT--------FPYKCLNSLQVLDYSLNHIMTSKK----QELQHFPS 248 (306)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS--------GGGTTCTTCCEEECTTSCCCBCSS----SSCCCCCT
T ss_pred ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh--------hhccCcccCCEeECCCCCCcccCH----HHHHhhhc
Confidence 9888765432 346678899998887654432111 125678899999998876433221 133345 4
Q ss_pred ccceEEEEeecc--CCcHHHHHHHHhhCC
Q 043655 368 NLKSLELHTGFN--KHNVQGLACLFRSSP 394 (512)
Q Consensus 368 ~L~~L~L~~~~~--~~~~~~l~~~L~~cp 394 (512)
+|+.|+|..+.- .+...++..+++..+
T Consensus 249 ~L~~L~L~~N~~~~~c~~~~~~~~l~~~~ 277 (306)
T 2z66_A 249 SLAFLNLTQNDFACTCEHQSFLQWIKDQR 277 (306)
T ss_dssp TCCEEECTTCCEECSGGGHHHHHHHHHTG
T ss_pred cCCEEEccCCCeecccChHHHHHHHHhhh
Confidence 899999975432 233445556665443
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.73 E-value=6.8e-09 Score=109.81 Aligned_cols=238 Identities=15% Similarity=0.113 Sum_probs=143.0
Q ss_pred cCCceeEEEeccCCCCCCCccee-ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVI-TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS 216 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 216 (512)
.+++.+++.. .....+|..++ .+++|++|+|++|... .+++.. ...+++|++|+|+++.+.+... ..+ ..
T Consensus 51 ~~l~~l~l~~--~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~--~~ 121 (597)
T 3oja_B 51 NNQKIVTFKN--STMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYA--FAYAHTIQKLYMGFNAIRYLPP--HVF--QN 121 (597)
T ss_dssp CCCSEEEESS--CEESEECTHHHHHCCCCSEEECTTSCCC-EECTTT--TTTCTTCCEEECCSSCCCCCCT--TTT--TT
T ss_pred CCceEEEeeC--CCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHH--hcCCCCCCEEECCCCcCCCCCH--HHH--cC
Confidence 3555555542 22345676655 5899999999985322 333322 3579999999999998876321 112 47
Q ss_pred Ccccceecccccc--ccc-hhcccccccceeeeccccCcccee---Ee-ccCcceEEEeeeccccCCCce------E---
Q 043655 217 FPHLKKLDLDACY--GLK-QLKVGCRALEDLTLDNCIQLCGLD---IF-GTKLERLRVASCFDAYCDKSW------V--- 280 (512)
Q Consensus 217 ~p~L~~L~L~~~~--~l~-~l~~~cp~Le~L~l~~c~~l~~~~---v~-~~~L~~L~l~~c~~~~~~~~~------~--- 280 (512)
+++|+.|+|.++. .+. .++..+++|+.|+|.+|.. ..+. +. .++|+.|.+.++......... +
T Consensus 122 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~ 200 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVS 200 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECC
T ss_pred CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC-CCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcc
Confidence 8999999999986 332 3457889999999999863 2221 21 278999999887543211100 0
Q ss_pred ------EEeCCCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhh
Q 043655 281 ------KIDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEIL 354 (512)
Q Consensus 281 ------~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~ 354 (512)
.-..++|+.|.++++.+... .....++|+.++++.+...+. ..+..+++|+.|+++.+.+...
T Consensus 201 ~n~l~~l~~~~~L~~L~ls~n~l~~~-~~~~~~~L~~L~L~~n~l~~~----------~~l~~l~~L~~L~Ls~N~l~~~ 269 (597)
T 3oja_B 201 YNLLSTLAIPIAVEELDASHNSINVV-RGPVNVELTILKLQHNNLTDT----------AWLLNYPGLVEVDLSYNELEKI 269 (597)
T ss_dssp SSCCSEEECCTTCSEEECCSSCCCEE-ECSCCSCCCEEECCSSCCCCC----------GGGGGCTTCSEEECCSSCCCEE
T ss_pred cCccccccCCchhheeeccCCccccc-ccccCCCCCEEECCCCCCCCC----------hhhccCCCCCEEECCCCccCCC
Confidence 01123444444444433211 111234666666665543221 2467788999999988765433
Q ss_pred cccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEee
Q 043655 355 SNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKII 404 (512)
Q Consensus 355 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~ 404 (512)
.. ..+..+++|+.|+|..+... ++...+..+|+|+.|++...
T Consensus 270 ~~----~~~~~l~~L~~L~Ls~N~l~----~l~~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 270 MY----HPFVKMQRLERLYISNNRLV----ALNLYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp ES----GGGTTCSSCCEEECTTSCCC----EEECSSSCCTTCCEEECCSS
T ss_pred CH----HHhcCccCCCEEECCCCCCC----CCCcccccCCCCcEEECCCC
Confidence 11 24456788999988653211 12233456899999998753
No 50
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.73 E-value=3e-09 Score=115.92 Aligned_cols=191 Identities=21% Similarity=0.144 Sum_probs=114.3
Q ss_pred cCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--c-cchhcccccccceeeeccccCcccee--E-eccC
Q 043655 188 GFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--G-LKQLKVGCRALEDLTLDNCIQLCGLD--I-FGTK 261 (512)
Q Consensus 188 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~-l~~l~~~cp~Le~L~l~~c~~l~~~~--v-~~~~ 261 (512)
.+++|++|+|+++.+.+...+ ..+++|++|+|.++. + +.. +..+++|++|++.+|.....+. + ..++
T Consensus 176 ~l~~L~~L~Ls~n~l~~~~~~------~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 248 (768)
T 3rgz_A 176 GCGELKHLAISGNKISGDVDV------SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE 248 (768)
T ss_dssp CCTTCCEEECCSSEEESCCBC------TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSS
T ss_pred cCCCCCEEECCCCcccccCCc------ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCC
Confidence 456666666666666543222 357777777777765 2 222 5667788888887775322111 1 1267
Q ss_pred cceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccccC-cccceeeEEeeEEcccchhHHHHhHHHHHhhcC
Q 043655 262 LERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLEN-LASLHEASVGFILLHEDLTSAKLQSVSNFLSGL 338 (512)
Q Consensus 262 L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l 338 (512)
|+.|.+.+|........ ...++|++|.+.++.+... ..+.. +++|+.+++..+...+. ....+..+
T Consensus 249 L~~L~Ls~n~l~~~~~~---~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~--------~p~~~~~l 317 (768)
T 3rgz_A 249 LKLLNISSNQFVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA--------VPPFFGSC 317 (768)
T ss_dssp CCEEECCSSCCEESCCC---CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC--------CCGGGGGC
T ss_pred CCEEECCCCcccCccCc---cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc--------cchHHhcC
Confidence 88888877754322111 1578899999888765322 22333 58999999876654322 12347788
Q ss_pred CcccEeeecchhhh-hhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCC-CCcEEEEEe
Q 043655 339 SHARSLTLESPCIE-ILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSP-SIHTLILKI 403 (512)
Q Consensus 339 ~~l~~L~l~~~~~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp-~Le~L~l~~ 403 (512)
++|+.|+++.+.+. .+.. .....+++|++|+|..+.... .++..+..++ +|+.|++..
T Consensus 318 ~~L~~L~L~~n~l~~~ip~----~~l~~l~~L~~L~Ls~n~l~~---~~p~~l~~l~~~L~~L~Ls~ 377 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPM----DTLLKMRGLKVLDLSFNEFSG---ELPESLTNLSASLLTLDLSS 377 (768)
T ss_dssp TTCCEEECCSSEEEEECCH----HHHTTCTTCCEEECCSSEEEE---CCCTTHHHHTTTCSEEECCS
T ss_pred CCccEEECCCCcccCcCCH----HHHhcCCCCCEEeCcCCccCc---cccHHHHhhhcCCcEEEccC
Confidence 99999999987643 1111 124567899999997542111 1112233444 999999864
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.72 E-value=6e-09 Score=100.79 Aligned_cols=126 Identities=14% Similarity=0.116 Sum_probs=82.7
Q ss_pred cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF 217 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 217 (512)
..++.|++.....-...+|..+..+++|++|+|++|.....+|. ....+++|++|+|+++.+.+. +...+ ..+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~--~p~~~--~~l 148 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD---FLSQIKTLVTLDFSYNALSGT--LPPSI--SSL 148 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG---GGGGCTTCCEEECCSSEEESC--CCGGG--GGC
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH---HHhCCCCCCEEeCCCCccCCc--CChHH--hcC
Confidence 67888888732222236788888899999999998533222332 235789999999999998852 11112 368
Q ss_pred cccceecccccc---ccchhccccc-ccceeeeccccCccce--eEeccCcceEEEeee
Q 043655 218 PHLKKLDLDACY---GLKQLKVGCR-ALEDLTLDNCIQLCGL--DIFGTKLERLRVASC 270 (512)
Q Consensus 218 p~L~~L~L~~~~---~l~~l~~~cp-~Le~L~l~~c~~l~~~--~v~~~~L~~L~l~~c 270 (512)
++|++|+|.++. .+..-+..++ .|+.|++.++.....+ .+...+|+.|.+.++
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N 207 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN 207 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSS
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCC
Confidence 999999999886 2333445666 9999999998532111 111123666666554
No 52
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.72 E-value=1.6e-08 Score=111.48 Aligned_cols=70 Identities=17% Similarity=0.061 Sum_probs=34.6
Q ss_pred CcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc
Q 043655 156 PRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY 229 (512)
Q Consensus 156 p~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~ 229 (512)
|..+..+++|++|+|++|...-..+. ......+++|++|+|+++.+.+.. ....+ ..+++|++|+|.++.
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~--~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLK-DGYFRNLKALTRLDLSKNQIRSLY-LHPSF--GKLNSLKSIDFSSNQ 159 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCST-TCCCSSCSSCCEEEEESCCCCCCC-CCGGG--GTCSSCCEEEEESSC
T ss_pred HhHccCCcccCEeeCcCCCCCccccc-CccccccCCCCEEECCCCcccccc-cchhH--hhCCCCCEEECCCCc
Confidence 44444566666666666422111222 111335666677776666654421 11111 256667777766653
No 53
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.71 E-value=4.5e-09 Score=107.23 Aligned_cols=217 Identities=15% Similarity=0.081 Sum_probs=153.1
Q ss_pred cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF 217 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 217 (512)
..++.|++.... ...+| .+..+++|++|+|++|. +.-.+ ...+++|++|+|+++.+.+.+ + ..+
T Consensus 42 ~~L~~L~Ls~n~--l~~~~-~l~~l~~L~~L~Ls~n~--l~~~~----~~~l~~L~~L~Ls~N~l~~~~-~------~~l 105 (457)
T 3bz5_A 42 ATLTSLDCHNSS--ITDMT-GIEKLTGLTKLICTSNN--ITTLD----LSQNTNLTYLACDSNKLTNLD-V------TPL 105 (457)
T ss_dssp TTCCEEECCSSC--CCCCT-TGGGCTTCSEEECCSSC--CSCCC----CTTCTTCSEEECCSSCCSCCC-C------TTC
T ss_pred CCCCEEEccCCC--cccCh-hhcccCCCCEEEccCCc--CCeEc----cccCCCCCEEECcCCCCceee-c------CCC
Confidence 678888876443 22345 46678999999999852 22222 346899999999999887642 2 478
Q ss_pred cccceecccccc--ccchhcccccccceeeeccccCccceeEec-cCcceEEEeeeccccCCCceEEE-eCCCcceEEee
Q 043655 218 PHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLDIFG-TKLERLRVASCFDAYCDKSWVKI-DASKLKVLNWE 293 (512)
Q Consensus 218 p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~-~~L~~L~l~~c~~~~~~~~~~~i-~~p~L~~L~~~ 293 (512)
++|+.|++.++. ++. +..+++|+.|++.++. +..+.+.. ++|+.|.+.+|.... .+.+ ..++|++|+++
T Consensus 106 ~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~----~~~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEIDVSHNTQLTELDCHLNKKIT----KLDVTPQTQLTTLDCS 178 (457)
T ss_dssp TTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCCCTTCTTCCEEECTTCSCCC----CCCCTTCTTCCEEECC
T ss_pred CcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceeccccCCcCCEEECCCCCccc----ccccccCCcCCEEECC
Confidence 999999999886 442 5678999999999986 33344332 789999998874321 1122 56899999999
Q ss_pred ccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEE
Q 043655 294 YNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLE 373 (512)
Q Consensus 294 ~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 373 (512)
++.+... .+..+++|+.++++.+..... -+..+++|+.|+++.+.+..+. ...+++|+.|+
T Consensus 179 ~n~l~~l-~l~~l~~L~~L~l~~N~l~~~-----------~l~~l~~L~~L~Ls~N~l~~ip-------~~~l~~L~~L~ 239 (457)
T 3bz5_A 179 FNKITEL-DVSQNKLLNRLNCDTNNITKL-----------DLNQNIQLTFLDCSSNKLTEID-------VTPLTQLTYFD 239 (457)
T ss_dssp SSCCCCC-CCTTCTTCCEEECCSSCCSCC-----------CCTTCTTCSEEECCSSCCSCCC-------CTTCTTCSEEE
T ss_pred CCcccee-ccccCCCCCEEECcCCcCCee-----------ccccCCCCCEEECcCCcccccC-------ccccCCCCEEE
Confidence 9877653 488899999999986654321 1667899999999988754431 34678999999
Q ss_pred EEeeccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655 374 LHTGFNKHNVQGLACLFRSSPSIHTLILK 402 (512)
Q Consensus 374 L~~~~~~~~~~~l~~~L~~cp~Le~L~l~ 402 (512)
+..+.-..- . +..+++|+.|.+.
T Consensus 240 l~~N~l~~~----~--~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 240 CSVNPLTEL----D--VSTLSKLTTLHCI 262 (457)
T ss_dssp CCSSCCSCC----C--CTTCTTCCEEECT
T ss_pred eeCCcCCCc----C--HHHCCCCCEEecc
Confidence 976432211 1 4578888887653
No 54
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.67 E-value=3.3e-08 Score=108.88 Aligned_cols=82 Identities=21% Similarity=0.240 Sum_probs=35.3
Q ss_pred ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCc--cchhhhhcCCCCcccceecccccccc----c-h
Q 043655 161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQ--PCLLDLFTDSSFPHLKKLDLDACYGL----K-Q 233 (512)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~l~~l~~~~~~p~L~~L~L~~~~~l----~-~ 233 (512)
.+++|++|+|++|.....+++.. ...+++|++|+|+++.+.+. ..+ .++++|++|+|.++.-- . .
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~--f~~L~~L~~L~Ls~N~l~~~~p~~~------~~l~~L~~L~Ls~n~l~~~~~~~~ 117 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEA--FRNLPNLRILDLGSSKIYFLHPDAF------QGLFHLFELRLYFCGLSDAVLKDG 117 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTT--TSSCTTCCEEECTTCCCCEECTTSS------CSCSSCCCEECTTCCCSSCCSTTC
T ss_pred ccccCeEEeCCCCCCccccCHHH--hcCCCCCCEEECCCCcCcccCHhHc------cCCcccCEeeCcCCCCCcccccCc
Confidence 45555555555532222232211 13455555555555544321 111 24555555555554311 0 1
Q ss_pred hcccccccceeeecccc
Q 043655 234 LKVGCRALEDLTLDNCI 250 (512)
Q Consensus 234 l~~~cp~Le~L~l~~c~ 250 (512)
.+..+++|+.|+|.+|.
T Consensus 118 ~~~~L~~L~~L~Ls~N~ 134 (844)
T 3j0a_A 118 YFRNLKALTRLDLSKNQ 134 (844)
T ss_dssp CCSSCSSCCEEEEESCC
T ss_pred cccccCCCCEEECCCCc
Confidence 13345555555555553
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.67 E-value=7.5e-08 Score=93.67 Aligned_cols=220 Identities=15% Similarity=0.117 Sum_probs=143.9
Q ss_pred CceeeeEEeeccCcchhhHHHHHHHhcCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcc
Q 043655 112 SYIRVLRFRAHLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRS 191 (512)
Q Consensus 112 ~~i~~l~l~~~~~~~~~~~wi~~~~~~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 191 (512)
+.++.+.+.... ...+...+.. -..++.|++....- ..+|..+..+++|++|+|++|... .+|. ....+++
T Consensus 81 ~~l~~L~L~~n~-l~~lp~~l~~--l~~L~~L~L~~n~l--~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~---~l~~l~~ 151 (328)
T 4fcg_A 81 PGRVALELRSVP-LPQFPDQAFR--LSHLQHMTIDAAGL--MELPDTMQQFAGLETLTLARNPLR-ALPA---SIASLNR 151 (328)
T ss_dssp TTCCEEEEESSC-CSSCCSCGGG--GTTCSEEEEESSCC--CCCCSCGGGGTTCSEEEEESCCCC-CCCG---GGGGCTT
T ss_pred cceeEEEccCCC-chhcChhhhh--CCCCCEEECCCCCc--cchhHHHhccCCCCEEECCCCccc-cCcH---HHhcCcC
Confidence 557777776521 1122211111 25788888875432 378888888999999999996433 3432 2457899
Q ss_pred cceEEeeeEEeeCc--cchhh-----hhcCCCCcccceecccccc--ccchhcccccccceeeeccccCccce-eEe-cc
Q 043655 192 LHTLSLSLVILFNQ--PCLLD-----LFTDSSFPHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGL-DIF-GT 260 (512)
Q Consensus 192 L~~L~L~~~~~~~~--~~l~~-----l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~-~v~-~~ 260 (512)
|++|+|++|.+.+. ..+.. .+ ..+++|+.|+|.++. .+..-+..+++|+.|+|.+|...... .+. .+
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~--~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~ 229 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTDASGEH--QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLP 229 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC-CCCE--EESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCT
T ss_pred CCEEECCCCCCccccChhHhhccchhhh--ccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCC
Confidence 99999999876542 11110 00 148999999999886 44445678899999999998643211 111 27
Q ss_pred CcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcC
Q 043655 261 KLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGL 338 (512)
Q Consensus 261 ~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l 338 (512)
+|+.|.+.+|........ .....++|++|.++++..... ..+.++++|+.++++.+...+. +...+..+
T Consensus 230 ~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~--------iP~~l~~L 300 (328)
T 4fcg_A 230 KLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR--------LPSLIAQL 300 (328)
T ss_dssp TCCEEECTTCTTCCBCCC-CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC--------CCGGGGGS
T ss_pred CCCEEECcCCcchhhhHH-HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh--------ccHHHhhc
Confidence 899999998755422111 112468999999998754332 3467899999999987654332 23457788
Q ss_pred CcccEeeecchhh
Q 043655 339 SHARSLTLESPCI 351 (512)
Q Consensus 339 ~~l~~L~l~~~~~ 351 (512)
++++.+.+.....
T Consensus 301 ~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 301 PANCIILVPPHLQ 313 (328)
T ss_dssp CTTCEEECCGGGS
T ss_pred cCceEEeCCHHHH
Confidence 9999999876543
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.66 E-value=8.4e-09 Score=106.13 Aligned_cols=211 Identities=16% Similarity=0.148 Sum_probs=132.6
Q ss_pred cCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccccchhccccccc
Q 043655 162 SDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRAL 241 (512)
Q Consensus 162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l~~l~~~cp~L 241 (512)
+++|++|+|++|... .+++. ....+++|++|+|+++.+.+...+ ..+++|+.|+|.++. +..+. ..++|
T Consensus 33 ~~~L~~L~Ls~n~l~-~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~l------~~l~~L~~L~Ls~N~-l~~l~-~~~~L 101 (487)
T 3oja_A 33 AWNVKELDLSGNPLS-QISAA--DLAPFTKLELLNLSSNVLYETLDL------ESLSTLRTLDLNNNY-VQELL-VGPSI 101 (487)
T ss_dssp GGGCCEEECCSSCCC-CCCGG--GGTTCTTCCEEECTTSCCEEEEEC------TTCTTCCEEECCSSE-EEEEE-ECTTC
T ss_pred CCCccEEEeeCCcCC-CCCHH--HHhCCCCCCEEEeeCCCCCCCccc------ccCCCCCEEEecCCc-CCCCC-CCCCc
Confidence 558999999985221 22221 235789999999999888754332 478999999999885 33222 34889
Q ss_pred ceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccc-cCcccceeeEEeeEE
Q 043655 242 EDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSL-ENLASLHEASVGFIL 318 (512)
Q Consensus 242 e~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l-~~~~~L~~l~l~~~~ 318 (512)
+.|++.+|.......-..++|+.|.+.++........ .....++|++|+++++.+... ..+ +.+++|+.++++.+.
T Consensus 102 ~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 102 ETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp CEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred CEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 9999998864332222237888888887654321110 111467888888888765432 122 367888888887655
Q ss_pred cccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcE
Q 043655 319 LHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHT 398 (512)
Q Consensus 319 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~ 398 (512)
..+.. -...+++|+.|+++.+.+..+.. ....+++|+.|+|+.+.-. +++..+..+|+|+.
T Consensus 181 l~~~~----------~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~l~~L~~L~Ls~N~l~----~lp~~l~~l~~L~~ 241 (487)
T 3oja_A 181 IYDVK----------GQVVFAKLKTLDLSSNKLAFMGP-----EFQSAAGVTWISLRNNKLV----LIEKALRFSQNLEH 241 (487)
T ss_dssp CCEEE----------CCCCCTTCCEEECCSSCCCEECG-----GGGGGTTCSEEECTTSCCC----EECTTCCCCTTCCE
T ss_pred ccccc----------ccccCCCCCEEECCCCCCCCCCH-----hHcCCCCccEEEecCCcCc----ccchhhccCCCCCE
Confidence 43221 12247788888888776543321 2346678888888653211 23334667788888
Q ss_pred EEEEe
Q 043655 399 LILKI 403 (512)
Q Consensus 399 L~l~~ 403 (512)
|++..
T Consensus 242 L~l~~ 246 (487)
T 3oja_A 242 FDLRG 246 (487)
T ss_dssp EECTT
T ss_pred EEcCC
Confidence 88864
No 57
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=3.8e-09 Score=115.37 Aligned_cols=238 Identities=12% Similarity=0.085 Sum_probs=110.3
Q ss_pred CCceeEEEeccCCCCCCCc--ceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655 139 NVEELDIEVATDDYFNLPR--CVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS 216 (512)
Q Consensus 139 ~v~~L~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 216 (512)
+++.|++....- ..+|. .+..+++|+.|+|++|... .+| ....+++|+.|+|+++.+.. +..-+ ..
T Consensus 549 ~L~~L~Ls~N~L--~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp----~~~~L~~L~~L~Ls~N~l~~---lp~~l--~~ 616 (876)
T 4ecn_A 549 KIQIFYMGYNNL--EEFPASASLQKMVKLGLLDCVHNKVR-HLE----AFGTNVKLTDLKLDYNQIEE---IPEDF--CA 616 (876)
T ss_dssp TCCEEECCSSCC--CBCCCHHHHTTCTTCCEEECTTSCCC-BCC----CCCTTSEESEEECCSSCCSC---CCTTS--CE
T ss_pred CccEEEeeCCcC--CccCChhhhhcCCCCCEEECCCCCcc-cch----hhcCCCcceEEECcCCcccc---chHHH--hh
Confidence 455555443222 24555 4555666666666654322 232 12345666666666655542 11111 23
Q ss_pred Ccc-cceecccccc--ccchhcccc--cccceeeeccccCccce---e-----EeccCcceEEEeeeccccCCCceEEEe
Q 043655 217 FPH-LKKLDLDACY--GLKQLKVGC--RALEDLTLDNCIQLCGL---D-----IFGTKLERLRVASCFDAYCDKSWVKID 283 (512)
Q Consensus 217 ~p~-L~~L~L~~~~--~l~~l~~~c--p~Le~L~l~~c~~l~~~---~-----v~~~~L~~L~l~~c~~~~~~~~~~~i~ 283 (512)
+++ |+.|+|.++. .+...+... +.|+.|+|.+|.....+ . ...++|+.|.+.+|..... ...+.-.
T Consensus 617 l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~l-p~~~~~~ 695 (876)
T 4ecn_A 617 FTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF-PTELFAT 695 (876)
T ss_dssp ECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSC-CHHHHHT
T ss_pred ccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCcc-CHHHHcc
Confidence 555 6666666554 222222222 23666666665432111 0 1123566666665533210 1111113
Q ss_pred CCCcceEEeeccccCCCc--c-------ccCcccceeeEEeeEEcccchhHHHHhHHHHHhh--cCCcccEeeecchhhh
Q 043655 284 ASKLKVLNWEYNAITASS--S-------LENLASLHEASVGFILLHEDLTSAKLQSVSNFLS--GLSHARSLTLESPCIE 352 (512)
Q Consensus 284 ~p~L~~L~~~~~~~~~~~--~-------l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~--~l~~l~~L~l~~~~~~ 352 (512)
.++|+.|.++++.+.... . ..++++|+.++++.+.... +...+. .+++|+.|+|+.+.+.
T Consensus 696 l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~---------lp~~l~~~~l~~L~~L~Ls~N~L~ 766 (876)
T 4ecn_A 696 GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS---------LSDDFRATTLPYLSNMDVSYNCFS 766 (876)
T ss_dssp TCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC---------CCGGGSTTTCTTCCEEECCSSCCS
T ss_pred CCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc---------chHHhhhccCCCcCEEEeCCCCCC
Confidence 466777777665543211 0 1123367777666543321 111232 5677777777766543
Q ss_pred hhcccccccccccccccceEEEEeec--cCCc-HHHHHHHHhhCCCCcEEEEEe
Q 043655 353 ILSNRNYFTNLHTFTNLKSLELHTGF--NKHN-VQGLACLFRSSPSIHTLILKI 403 (512)
Q Consensus 353 ~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~-~~~l~~~L~~cp~Le~L~l~~ 403 (512)
.+. .....+++|+.|+|+.+. .... ...++..+..+|+|+.|+|..
T Consensus 767 ~lp-----~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~ 815 (876)
T 4ecn_A 767 SFP-----TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815 (876)
T ss_dssp SCC-----CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred ccc-----hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCC
Confidence 321 133356677777775421 0000 012233456677777777753
No 58
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.64 E-value=7.8e-09 Score=100.85 Aligned_cols=214 Identities=14% Similarity=0.078 Sum_probs=95.4
Q ss_pred CCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhcccccc
Q 043655 163 DSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGCRA 240 (512)
Q Consensus 163 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp~ 240 (512)
++|+.|+|++|... .+++.. ...+++|++|+|+++.+.+.. ...+ ..+++|++|+|.++. .+..- ..++
T Consensus 54 ~~l~~L~l~~n~i~-~~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~--~~l~~L~~L~L~~n~l~~l~~~--~~~~ 124 (332)
T 2ft3_A 54 PDTTLLDLQNNDIS-ELRKDD--FKGLQHLYALVLVNNKISKIH--EKAF--SPLRKLQKLYISKNHLVEIPPN--LPSS 124 (332)
T ss_dssp TTCCEEECCSSCCC-EECTTT--TTTCTTCCEEECCSSCCCEEC--GGGS--TTCTTCCEEECCSSCCCSCCSS--CCTT
T ss_pred CCCeEEECCCCcCC-ccCHhH--hhCCCCCcEEECCCCccCccC--HhHh--hCcCCCCEEECCCCcCCccCcc--cccc
Confidence 45666666653211 222211 234666666666665554310 0011 246666666666553 11111 1156
Q ss_pred cceeeeccccCcccee---Ee-ccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCCccccCcccceeeEEee
Q 043655 241 LEDLTLDNCIQLCGLD---IF-GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGF 316 (512)
Q Consensus 241 Le~L~l~~c~~l~~~~---v~-~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~ 316 (512)
|++|++.++.. ..+. +. .++|+.|.+.++...........+...+|++|.++++.+.... ..-.++|++++++.
T Consensus 125 L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~-~~~~~~L~~L~l~~ 202 (332)
T 2ft3_A 125 LVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIP-KDLPETLNELHLDH 202 (332)
T ss_dssp CCEEECCSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCC-SSSCSSCSCCBCCS
T ss_pred CCEEECCCCcc-CccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccC-ccccCCCCEEECCC
Confidence 66666666542 1111 11 2556666665543211000000011115666666555443211 11224566665554
Q ss_pred EEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCC
Q 043655 317 ILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSI 396 (512)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~L 396 (512)
+...+.. ...+..+++|+.|+++.+.+..+.. .....+++|++|+|..+.-. .++..+..+|+|
T Consensus 203 n~i~~~~--------~~~l~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~----~lp~~l~~l~~L 266 (332)
T 2ft3_A 203 NKIQAIE--------LEDLLRYSKLYRLGLGHNQIRMIEN----GSLSFLPTLRELHLDNNKLS----RVPAGLPDLKLL 266 (332)
T ss_dssp SCCCCCC--------TTSSTTCTTCSCCBCCSSCCCCCCT----TGGGGCTTCCEEECCSSCCC----BCCTTGGGCTTC
T ss_pred CcCCccC--------HHHhcCCCCCCEEECCCCcCCcCCh----hHhhCCCCCCEEECCCCcCe----ecChhhhcCccC
Confidence 3322110 1124456666777766654332211 12335567777776543211 222234567777
Q ss_pred cEEEEEe
Q 043655 397 HTLILKI 403 (512)
Q Consensus 397 e~L~l~~ 403 (512)
+.|++..
T Consensus 267 ~~L~l~~ 273 (332)
T 2ft3_A 267 QVVYLHT 273 (332)
T ss_dssp CEEECCS
T ss_pred CEEECCC
Confidence 7777653
No 59
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.64 E-value=3.6e-09 Score=104.60 Aligned_cols=208 Identities=17% Similarity=0.132 Sum_probs=112.4
Q ss_pred cCc-ccceEEeeeEEeeCc--cchhhhhcCCCCcccceecccccc-------ccchhcccc-cccceeeeccccCcccee
Q 043655 188 GFR-SLHTLSLSLVILFNQ--PCLLDLFTDSSFPHLKKLDLDACY-------GLKQLKVGC-RALEDLTLDNCIQLCGLD 256 (512)
Q Consensus 188 ~~~-~L~~L~L~~~~~~~~--~~l~~l~~~~~~p~L~~L~L~~~~-------~l~~l~~~c-p~Le~L~l~~c~~l~~~~ 256 (512)
.++ +|++|+|+++.+.+. ..+..++. ..+++|++|+|.++. .+...+..+ ++|+.|++.+|. +....
T Consensus 48 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~ 125 (362)
T 3goz_A 48 NTPASVTSLNLSGNSLGFKNSDELVQILA-AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKS 125 (362)
T ss_dssp TCCTTCCEEECCSSCGGGSCHHHHHHHHH-TSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred hCCCceeEEECcCCCCCHHHHHHHHHHHh-ccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHH
Confidence 455 677777777666542 22333332 223677777777664 111223334 677777777775 22222
Q ss_pred Ee---------ccCcceEEEeeeccccCCCceEE---EeC-CCcceEEeeccccCCCc------cccCc-ccceeeEEee
Q 043655 257 IF---------GTKLERLRVASCFDAYCDKSWVK---IDA-SKLKVLNWEYNAITASS------SLENL-ASLHEASVGF 316 (512)
Q Consensus 257 v~---------~~~L~~L~l~~c~~~~~~~~~~~---i~~-p~L~~L~~~~~~~~~~~------~l~~~-~~L~~l~l~~ 316 (512)
.. .++|++|.+.+|.....+...+. ... ++|++|.++++.+.... .+... ++|+.++++.
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 205 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA 205 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC
Confidence 11 13677777776644322211110 112 37888888777654332 22344 4888888876
Q ss_pred EEcccchhHHHHhHHHHHhhc-CCcccEeeecchhhhhhcccccccccccccccceEEEEeec-cCCcHHHHHHHHhhCC
Q 043655 317 ILLHEDLTSAKLQSVSNFLSG-LSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGF-NKHNVQGLACLFRSSP 394 (512)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~-l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~l~~~L~~cp 394 (512)
+...+.. ...+...+.. .++|+.|+++.+.+..............+++|++|+|..+. ......++..+.+.++
T Consensus 206 N~i~~~~----~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~ 281 (362)
T 3goz_A 206 NLLGLKS----YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP 281 (362)
T ss_dssp SCGGGSC----HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTST
T ss_pred CCCChhH----HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhc
Confidence 6543221 1234445555 45899999988765332221111244567889999998753 2234455666666666
Q ss_pred CCcEEEE
Q 043655 395 SIHTLIL 401 (512)
Q Consensus 395 ~Le~L~l 401 (512)
+++.|..
T Consensus 282 ~l~~L~~ 288 (362)
T 3goz_A 282 NIQKIIL 288 (362)
T ss_dssp TCCEEEE
T ss_pred cCCceEE
Confidence 6666653
No 60
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.63 E-value=3.1e-08 Score=108.17 Aligned_cols=93 Identities=11% Similarity=-0.010 Sum_probs=56.3
Q ss_pred CCccee--ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEE-eeC---ccchhhhh-cCCCCcccceecccc
Q 043655 155 LPRCVI--TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVI-LFN---QPCLLDLF-TDSSFPHLKKLDLDA 227 (512)
Q Consensus 155 lp~~l~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~---~~~l~~l~-~~~~~p~L~~L~L~~ 227 (512)
+|..+. .+++|++|+|++|.....+|. ....+++|+.|+|+++. +.+ +..+..+. ....+|+|+.|+|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~---~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPD---FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCG---GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChH---HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence 777775 788888888888533333432 23467888888888776 543 12233321 223566777777776
Q ss_pred cc--ccch--hcccccccceeeecccc
Q 043655 228 CY--GLKQ--LKVGCRALEDLTLDNCI 250 (512)
Q Consensus 228 ~~--~l~~--l~~~cp~Le~L~l~~c~ 250 (512)
+. .+.. .+..+++|+.|+|.++.
T Consensus 558 N~L~~ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 558 NNLEEFPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp SCCCBCCCHHHHTTCTTCCEEECTTSC
T ss_pred CcCCccCChhhhhcCCCCCEEECCCCC
Confidence 65 3333 44566667777766664
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.63 E-value=8.5e-09 Score=99.92 Aligned_cols=103 Identities=15% Similarity=0.088 Sum_probs=57.5
Q ss_pred CCCcceEEeeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccc
Q 043655 284 ASKLKVLNWEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFT 361 (512)
Q Consensus 284 ~p~L~~L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~ 361 (512)
.++|++|.++++.+... ..+..+++|+.++++.+...+.. ...+...+++++.|+++.+.+..+.
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~~~~~~~l~~L~~L~L~~N~l~~~~------ 185 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-------FAELAASSDTLEHLNLQYNFIYDVK------ 185 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE-------GGGGGGGTTTCCEEECTTSCCCEEE------
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc-------HHHHhhccCcCCEEECCCCcCcccc------
Confidence 45666666666654332 23456677777777654432211 1123345677888888776654331
Q ss_pred ccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655 362 NLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI 403 (512)
Q Consensus 362 ~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~ 403 (512)
....+++|++|+|+.+.-. .+..-+..+++|+.|++..
T Consensus 186 ~~~~l~~L~~L~Ls~N~l~----~l~~~~~~l~~L~~L~L~~ 223 (317)
T 3o53_A 186 GQVVFAKLKTLDLSSNKLA----FMGPEFQSAAGVTWISLRN 223 (317)
T ss_dssp CCCCCTTCCEEECCSSCCC----EECGGGGGGTTCSEEECTT
T ss_pred cccccccCCEEECCCCcCC----cchhhhcccCcccEEECcC
Confidence 1124678888887654211 1111256778888887753
No 62
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.61 E-value=2.6e-08 Score=106.08 Aligned_cols=93 Identities=6% Similarity=-0.077 Sum_probs=57.2
Q ss_pred CCccee--ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEE-eeC---ccchhhhhcCCCCcccceeccccc
Q 043655 155 LPRCVI--TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVI-LFN---QPCLLDLFTDSSFPHLKKLDLDAC 228 (512)
Q Consensus 155 lp~~l~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~---~~~l~~l~~~~~~p~L~~L~L~~~ 228 (512)
+|..+. .+++|++|+|++|.....+|.. ...+++|++|+|+++. +.+ ...+..+.....+++|+.|+|.++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTF---LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTT---TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHH---HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 788887 8889999999886433344432 3468888888888876 543 122332211123577777777766
Q ss_pred c--ccch--hcccccccceeeecccc
Q 043655 229 Y--GLKQ--LKVGCRALEDLTLDNCI 250 (512)
Q Consensus 229 ~--~l~~--l~~~cp~Le~L~l~~c~ 250 (512)
. .+.. .+..+++|+.|++.+|.
T Consensus 316 ~l~~ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 316 NLKTFPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp CCSSCCCHHHHTTCTTCCEEECCSCC
T ss_pred cCCccCchhhhccCCCCCEEeCcCCc
Confidence 4 3333 44566677777776664
No 63
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.60 E-value=1.2e-08 Score=108.55 Aligned_cols=240 Identities=14% Similarity=0.109 Sum_probs=124.9
Q ss_pred cCCceeEEEeccCCCCCCCc--ceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCC
Q 043655 138 HNVEELDIEVATDDYFNLPR--CVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDS 215 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~ 215 (512)
..++.|++....- ..+|. .+..+++|++|+|++|.....+| ....+++|++|+|+++.+.. +..-+ .
T Consensus 305 ~~L~~L~L~~n~l--~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip----~~~~l~~L~~L~L~~N~l~~---lp~~l--~ 373 (636)
T 4eco_A 305 EKIQIIYIGYNNL--KTFPVETSLQKMKKLGMLECLYNQLEGKLP----AFGSEIKLASLNLAYNQITE---IPANF--C 373 (636)
T ss_dssp GTCCEEECCSSCC--SSCCCHHHHTTCTTCCEEECCSCCCEEECC----CCEEEEEESEEECCSSEEEE---CCTTS--E
T ss_pred CCCCEEECCCCcC--CccCchhhhccCCCCCEEeCcCCcCccchh----hhCCCCCCCEEECCCCcccc---ccHhh--h
Confidence 4566666553322 25666 56667777777777643322333 12356777777777776653 11111 2
Q ss_pred CCcc-cceecccccc--ccchhccc--ccccceeeeccccCccce--eE--------eccCcceEEEeeeccccCCCceE
Q 043655 216 SFPH-LKKLDLDACY--GLKQLKVG--CRALEDLTLDNCIQLCGL--DI--------FGTKLERLRVASCFDAYCDKSWV 280 (512)
Q Consensus 216 ~~p~-L~~L~L~~~~--~l~~l~~~--cp~Le~L~l~~c~~l~~~--~v--------~~~~L~~L~l~~c~~~~~~~~~~ 280 (512)
.+++ |+.|++.++. .+...+.. +++|+.|++.+|...... .+ ..++|+.|.+.++..... ...+
T Consensus 374 ~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~ 452 (636)
T 4eco_A 374 GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF-PKEL 452 (636)
T ss_dssp EECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSC-CTHH
T ss_pred hhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcC-CHHH
Confidence 4566 7777777665 22222222 236777777776532211 01 224677777776543211 1111
Q ss_pred EEeCCCcceEEeeccccCCCc--cc-------cCcccceeeEEeeEEcccchhHHHHhHHHHHh--hcCCcccEeeecch
Q 043655 281 KIDASKLKVLNWEYNAITASS--SL-------ENLASLHEASVGFILLHEDLTSAKLQSVSNFL--SGLSHARSLTLESP 349 (512)
Q Consensus 281 ~i~~p~L~~L~~~~~~~~~~~--~l-------~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l--~~l~~l~~L~l~~~ 349 (512)
.-..++|++|.++++.+.... .+ .++++|+.++++.+.... +...+ ..+++|+.|+++.+
T Consensus 453 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~---------lp~~~~~~~l~~L~~L~Ls~N 523 (636)
T 4eco_A 453 FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK---------LSDDFRATTLPYLVGIDLSYN 523 (636)
T ss_dssp HHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB---------CCGGGSTTTCTTCCEEECCSS
T ss_pred HccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc---------cChhhhhccCCCcCEEECCCC
Confidence 112567777777776554211 11 122377777776554321 11123 36777888888776
Q ss_pred hhhhhcccccccccccccccceEEEEeec--cCCc-HHHHHHHHhhCCCCcEEEEEe
Q 043655 350 CIEILSNRNYFTNLHTFTNLKSLELHTGF--NKHN-VQGLACLFRSSPSIHTLILKI 403 (512)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~-~~~l~~~L~~cp~Le~L~l~~ 403 (512)
.+..+. .....+++|+.|+|+.+. .... ...++..+..+++|+.|++..
T Consensus 524 ~l~~ip-----~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 575 (636)
T 4eco_A 524 SFSKFP-----TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575 (636)
T ss_dssp CCSSCC-----CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred CCCCcC-----hhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCC
Confidence 654321 233457778888774321 0000 112333456788888887754
No 64
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.58 E-value=3e-08 Score=93.72 Aligned_cols=186 Identities=17% Similarity=0.131 Sum_probs=89.1
Q ss_pred cCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--cc-chhcccc
Q 043655 162 SDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GL-KQLKVGC 238 (512)
Q Consensus 162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l-~~l~~~c 238 (512)
.++|+.|.+.++ .+...+. ...+++|++|+|+++.+.+...+ ..+++|++|+|.++. ++ ...+..+
T Consensus 40 l~~L~~L~l~~~--~i~~~~~---l~~l~~L~~L~l~~n~l~~~~~l------~~l~~L~~L~L~~n~l~~~~~~~~~~l 108 (272)
T 3rfs_A 40 LNSIDQIIANNS--DIKSVQG---IQYLPNVRYLALGGNKLHDISAL------KELTNLTYLILTGNQLQSLPNGVFDKL 108 (272)
T ss_dssp HTTCCEEECTTS--CCCCCTT---GGGCTTCCEEECTTSCCCCCGGG------TTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred ccceeeeeeCCC--Ccccccc---cccCCCCcEEECCCCCCCCchhh------cCCCCCCEEECCCCccCccChhHhcCC
Confidence 455566665552 2211111 23466666666666655543222 356666666666654 11 1223456
Q ss_pred cccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccccCcccceeeEEee
Q 043655 239 RALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLENLASLHEASVGF 316 (512)
Q Consensus 239 p~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~~~~~L~~l~l~~ 316 (512)
++|+.|++.+|.. ..+.-.. .-..++|++|.++++.+... ..+.++++|+.++++.
T Consensus 109 ~~L~~L~L~~n~l-~~~~~~~---------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (272)
T 3rfs_A 109 TNLKELVLVENQL-QSLPDGV---------------------FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166 (272)
T ss_dssp TTCCEEECTTSCC-CCCCTTT---------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cCCCEEECCCCcC-CccCHHH---------------------hccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC
Confidence 6777777766642 1111000 00123444444444333221 1134555555555554
Q ss_pred EEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCC
Q 043655 317 ILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSI 396 (512)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~L 396 (512)
+...+.. ...+..+++|+.|++..+.+..+.. .....+++|++|+|..+... ..||+|
T Consensus 167 n~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~~----------~~~~~l 224 (272)
T 3rfs_A 167 NQLQSLP--------EGVFDKLTQLKDLRLYQNQLKSVPD----GVFDRLTSLQYIWLHDNPWD----------CTCPGI 224 (272)
T ss_dssp SCCCCCC--------TTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSSCBC----------CCTTTT
T ss_pred CCcCccC--------HHHhcCCccCCEEECCCCcCCccCH----HHHhCCcCCCEEEccCCCcc----------ccCcHH
Confidence 4322110 1234566777788877665433221 23446778888888654222 236666
Q ss_pred cEEEEE
Q 043655 397 HTLILK 402 (512)
Q Consensus 397 e~L~l~ 402 (512)
+.|.+.
T Consensus 225 ~~l~~~ 230 (272)
T 3rfs_A 225 RYLSEW 230 (272)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 65
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.57 E-value=4.4e-07 Score=94.15 Aligned_cols=246 Identities=15% Similarity=0.073 Sum_probs=134.8
Q ss_pred cCCceeEEEeccCCCCCC-CcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655 138 HNVEELDIEVATDDYFNL-PRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS 216 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 216 (512)
..++.|++.... ...+ |..+..+++|++|+|++|... .+|.. .+++|++|+|+++.+.+.. +...+ ..
T Consensus 45 ~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-----~l~~L~~L~L~~N~l~~~~-~p~~~--~~ 113 (520)
T 2z7x_B 45 SKLRILIISHNR--IQYLDISVFKFNQELEYLDLSHNKLV-KISCH-----PTVNLKHLDLSFNAFDALP-ICKEF--GN 113 (520)
T ss_dssp TTCCEEECCSSC--CCEEEGGGGTTCTTCCEEECCSSCCC-EEECC-----CCCCCSEEECCSSCCSSCC-CCGGG--GG
T ss_pred ccccEEecCCCc--cCCcChHHhhcccCCCEEecCCCcee-ecCcc-----ccCCccEEeccCCcccccc-chhhh--cc
Confidence 567776665332 1223 444556788888888885332 34432 5788888888888776421 11111 35
Q ss_pred Ccccceeccccccccchhccccccc--ceeeeccccC---------cccee-----E-----------------eccCcc
Q 043655 217 FPHLKKLDLDACYGLKQLKVGCRAL--EDLTLDNCIQ---------LCGLD-----I-----------------FGTKLE 263 (512)
Q Consensus 217 ~p~L~~L~L~~~~~l~~l~~~cp~L--e~L~l~~c~~---------l~~~~-----v-----------------~~~~L~ 263 (512)
+++|++|++.++.--..-+..++.| +.|++.+|.. +..+. + ..++|+
T Consensus 114 l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~ 193 (520)
T 2z7x_B 114 MSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193 (520)
T ss_dssp CTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEE
T ss_pred CCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccccee
Confidence 7888888888775222334456666 7777777643 01100 0 012333
Q ss_pred eEEEeeec---------------cccCCCceEEE-----------------eCCCcceEEeeccccCCC--ccc-----c
Q 043655 264 RLRVASCF---------------DAYCDKSWVKI-----------------DASKLKVLNWEYNAITAS--SSL-----E 304 (512)
Q Consensus 264 ~L~l~~c~---------------~~~~~~~~~~i-----------------~~p~L~~L~~~~~~~~~~--~~l-----~ 304 (512)
.|.+.++. ........+.+ ..++|++|.++++.+... ..+ +
T Consensus 194 ~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~ 273 (520)
T 2z7x_B 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT 273 (520)
T ss_dssp ECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSC
T ss_pred eccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccc
Confidence 33333321 00000000110 134778887777654321 122 5
Q ss_pred CcccceeeEEeeEEcccchhHHHHhHHHHH---------------------hhcCCcccEeeecchhhhhhccccccccc
Q 043655 305 NLASLHEASVGFILLHEDLTSAKLQSVSNF---------------------LSGLSHARSLTLESPCIEILSNRNYFTNL 363 (512)
Q Consensus 305 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~---------------------l~~l~~l~~L~l~~~~~~~~~~~~~~~~~ 363 (512)
.++.|+.+++..... .- . ...+..+ ...+++++.|+++.+.+.... +...
T Consensus 274 ~l~~L~~l~l~~n~~-~~-p---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~ 344 (520)
T 2z7x_B 274 SLKALSIHQVVSDVF-GF-P---QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTV----FENC 344 (520)
T ss_dssp CCCEEEEEEEEECCC-CS-C---THHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTT----TTTC
T ss_pred cCceeEeccccccce-ec-c---hhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhh----hhhh
Confidence 677777777765443 10 0 0111122 156788888888876543311 1244
Q ss_pred ccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEee
Q 043655 364 HTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKII 404 (512)
Q Consensus 364 ~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~ 404 (512)
..+++|+.|.|..+ .-.+...++..+..+++|+.|++...
T Consensus 345 ~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 345 GHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp CCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred ccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCC
Confidence 57889999999764 22344566778899999999998653
No 66
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.57 E-value=6.4e-08 Score=92.43 Aligned_cols=78 Identities=17% Similarity=0.097 Sum_probs=55.0
Q ss_pred ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhcccc
Q 043655 161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGC 238 (512)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~c 238 (512)
.+++|+.|.+++| .+.-.+. ...+++|++|+|+++.+.+...+ ..+++|+.|+|.++. .+.. +..+
T Consensus 44 ~l~~L~~L~l~~~--~i~~~~~---~~~l~~L~~L~L~~n~l~~~~~l------~~l~~L~~L~l~~n~l~~~~~-l~~l 111 (291)
T 1h6t_A 44 ELNSIDQIIANNS--DIKSVQG---IQYLPNVTKLFLNGNKLTDIKPL------ANLKNLGWLFLDENKVKDLSS-LKDL 111 (291)
T ss_dssp HHHTCCEEECTTS--CCCCCTT---GGGCTTCCEEECCSSCCCCCGGG------TTCTTCCEEECCSSCCCCGGG-GTTC
T ss_pred hcCcccEEEccCC--CcccChh---HhcCCCCCEEEccCCccCCCccc------ccCCCCCEEECCCCcCCCChh-hccC
Confidence 4788999999884 2322121 34689999999998888764332 478889999988875 3333 4567
Q ss_pred cccceeeecccc
Q 043655 239 RALEDLTLDNCI 250 (512)
Q Consensus 239 p~Le~L~l~~c~ 250 (512)
++|+.|++.+|.
T Consensus 112 ~~L~~L~L~~n~ 123 (291)
T 1h6t_A 112 KKLKSLSLEHNG 123 (291)
T ss_dssp TTCCEEECTTSC
T ss_pred CCCCEEECCCCc
Confidence 888888888875
No 67
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.56 E-value=2.5e-08 Score=107.25 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=17.4
Q ss_pred ccCCccEEEEecccCccccCCCccccccCcccceEEeeeE
Q 043655 161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLV 200 (512)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 200 (512)
.+++|++|+|++|... .+++. ...++++|++|+|+++
T Consensus 327 ~l~~L~~L~l~~n~l~-~~~~~--~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIP-GIKSN--MFTGLINLKYLSLSNS 363 (680)
T ss_dssp TCTTCCEEECCSCCBC-CCCTT--TTTTCTTCCEEECTTC
T ss_pred cCCCCCEEECCCCccC-CCChh--HhccccCCcEEECCCC
Confidence 4566666666653211 11111 1234556666666544
No 68
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.55 E-value=4.8e-09 Score=104.62 Aligned_cols=210 Identities=16% Similarity=0.120 Sum_probs=129.0
Q ss_pred cCcccceEEeeeEEeeCcc--chhhhhcCCCCcccceecccccc--c-----------cchhcccccccceeeeccccCc
Q 043655 188 GFRSLHTLSLSLVILFNQP--CLLDLFTDSSFPHLKKLDLDACY--G-----------LKQLKVGCRALEDLTLDNCIQL 252 (512)
Q Consensus 188 ~~~~L~~L~L~~~~~~~~~--~l~~l~~~~~~p~L~~L~L~~~~--~-----------l~~l~~~cp~Le~L~l~~c~~l 252 (512)
.+++|++|+|+++.+.+.. .+...+ ..+++|++|+|.+|. . +...+..+++|+.|+|.+|..-
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l--~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENI--ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTT--TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHH--HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 4566777777776665421 122222 357778888777652 1 1122467899999999998632
Q ss_pred c----ce--e-EeccCcceEEEeeeccccCCCceEE--E-eC---------CCcceEEeeccccCCC------ccccCcc
Q 043655 253 C----GL--D-IFGTKLERLRVASCFDAYCDKSWVK--I-DA---------SKLKVLNWEYNAITAS------SSLENLA 307 (512)
Q Consensus 253 ~----~~--~-v~~~~L~~L~l~~c~~~~~~~~~~~--i-~~---------p~L~~L~~~~~~~~~~------~~l~~~~ 307 (512)
. .+ . -..++|++|.+.+|.........+. + .. ++|++|.++++.+... ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 2 11 1 1238999999999854311100110 0 11 8999999998876422 1345778
Q ss_pred cceeeEEeeEEcccchhHHHHhHHHH-HhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccC-CcHHH
Q 043655 308 SLHEASVGFILLHEDLTSAKLQSVSN-FLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNK-HNVQG 385 (512)
Q Consensus 308 ~L~~l~l~~~~~~~~~~~~~~~~~~~-~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~ 385 (512)
+|+.++++.+...... ...+.. .+..+++|+.|+|+.+.+...........+..+++|++|+|+.+.-. .....
T Consensus 188 ~L~~L~L~~n~l~~~g----~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEG----IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp TCCEEECCSSCCCHHH----HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred CcCEEECcCCCCCHhH----HHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 9999999877543211 122333 67789999999999877532111111124457889999999764322 12234
Q ss_pred HHHHHhh--CCCCcEEEEEe
Q 043655 386 LACLFRS--SPSIHTLILKI 403 (512)
Q Consensus 386 l~~~L~~--cp~Le~L~l~~ 403 (512)
+...++. +|+|+.|+|..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~ 283 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQY 283 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCS
T ss_pred HHHHHhhccCCCeEEEECcC
Confidence 5666755 99999999975
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.53 E-value=1.3e-07 Score=99.64 Aligned_cols=171 Identities=18% Similarity=0.057 Sum_probs=88.2
Q ss_pred CcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccccchhcccccccceeeeccccCccceeEeccCcceEEEe
Q 043655 189 FRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVA 268 (512)
Q Consensus 189 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~ 268 (512)
+++|++|+|+++.+.+-. ..+++|++|++.++. +..+-...++|+.|++.+|. +..+.-..++|+.|.+.
T Consensus 100 l~~L~~L~Ls~N~l~~l~--------~~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~ 169 (622)
T 3g06_A 100 PPGLLELSIFSNPLTHLP--------ALPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDNQ-LASLPALPSELCKLWAY 169 (622)
T ss_dssp CTTCCEEEECSCCCCCCC--------CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECC
T ss_pred CCCCCEEECcCCcCCCCC--------CCCCCcCEEECCCCC-CCcCCCCCCCCCEEECcCCc-CCCcCCccCCCCEEECC
Confidence 555666665555444311 134556666665553 22233334666666666653 22222223556666665
Q ss_pred eeccccCCCceEEEeCCCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecc
Q 043655 269 SCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLES 348 (512)
Q Consensus 269 ~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~ 348 (512)
++.... +....++|+.|.++++.+.... ...++|+.++++.+.... +...+++|+.|+++.
T Consensus 170 ~N~l~~-----l~~~~~~L~~L~Ls~N~l~~l~--~~~~~L~~L~L~~N~l~~------------l~~~~~~L~~L~Ls~ 230 (622)
T 3g06_A 170 NNQLTS-----LPMLPSGLQELSVSDNQLASLP--TLPSELYKLWAYNNRLTS------------LPALPSGLKELIVSG 230 (622)
T ss_dssp SSCCSC-----CCCCCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSS------------CCCCCTTCCEEECCS
T ss_pred CCCCCC-----CcccCCCCcEEECCCCCCCCCC--CccchhhEEECcCCcccc------------cCCCCCCCCEEEccC
Confidence 543221 1123467777777766554321 134566666665443211 112346778888876
Q ss_pred hhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655 349 PCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI 403 (512)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~ 403 (512)
+.+..+. ..+++|+.|+|+.+.-. .++. .+++|++|++..
T Consensus 231 N~L~~lp--------~~l~~L~~L~Ls~N~L~----~lp~---~~~~L~~L~Ls~ 270 (622)
T 3g06_A 231 NRLTSLP--------VLPSELKELMVSGNRLT----SLPM---LPSGLLSLSVYR 270 (622)
T ss_dssp SCCSCCC--------CCCTTCCEEECCSSCCS----CCCC---CCTTCCEEECCS
T ss_pred CccCcCC--------CCCCcCcEEECCCCCCC----cCCc---ccccCcEEeCCC
Confidence 6543321 35578888888754211 1111 567888888764
No 70
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.52 E-value=1.4e-08 Score=100.38 Aligned_cols=209 Identities=18% Similarity=0.154 Sum_probs=134.2
Q ss_pred CcccceEEeeeEEeeCcc--chhhhhcCCCCc-ccceecccccc----c---cchhccc-ccccceeeeccccCccceeE
Q 043655 189 FRSLHTLSLSLVILFNQP--CLLDLFTDSSFP-HLKKLDLDACY----G---LKQLKVG-CRALEDLTLDNCIQLCGLDI 257 (512)
Q Consensus 189 ~~~L~~L~L~~~~~~~~~--~l~~l~~~~~~p-~L~~L~L~~~~----~---l~~l~~~-cp~Le~L~l~~c~~l~~~~v 257 (512)
.++|++|+|+++.+.+.. .+.+.+ ..+| +|++|+|.++. + +..++.. +++|++|+|.+|.- .....
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l--~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l-~~~~~ 97 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAF--ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL-SYKSS 97 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHH--HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG-GGSCH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHH--HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC-ChHHH
Confidence 345888888888876532 122333 2678 99999999986 1 2223333 39999999999973 22211
Q ss_pred -------ec--cCcceEEEeeeccccCCCceEE--E-e-CCCcceEEeeccccCCCc------cccCcc-cceeeEEeeE
Q 043655 258 -------FG--TKLERLRVASCFDAYCDKSWVK--I-D-ASKLKVLNWEYNAITASS------SLENLA-SLHEASVGFI 317 (512)
Q Consensus 258 -------~~--~~L~~L~l~~c~~~~~~~~~~~--i-~-~p~L~~L~~~~~~~~~~~------~l~~~~-~L~~l~l~~~ 317 (512)
.. ++|++|.+.+|.........+. + . ..+|++|+++++.+.... .+...+ +|++++++.+
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 11 6899999999865433211111 1 1 359999999998765321 123444 9999999877
Q ss_pred EcccchhHHHHhHHHHHhhcCC-cccEeeecchhhhhhccccccccccc-ccccceEEEEeecc-CCcHHHHHHHHhhCC
Q 043655 318 LLHEDLTSAKLQSVSNFLSGLS-HARSLTLESPCIEILSNRNYFTNLHT-FTNLKSLELHTGFN-KHNVQGLACLFRSSP 394 (512)
Q Consensus 318 ~~~~~~~~~~~~~~~~~l~~l~-~l~~L~l~~~~~~~~~~~~~~~~~~~-~~~L~~L~L~~~~~-~~~~~~l~~~L~~cp 394 (512)
...+.. ...+...+..++ +|+.|+++.+.+.............. .++|++|+|+.+.- ......+..+++.++
T Consensus 178 ~l~~~~----~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~ 253 (362)
T 3goz_A 178 NLASKN----CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253 (362)
T ss_dssp CGGGSC----HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTT
T ss_pred CCchhh----HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCC
Confidence 543321 234666778884 99999999887644221111112222 35899999986532 334567778889999
Q ss_pred CCcEEEEEee
Q 043655 395 SIHTLILKII 404 (512)
Q Consensus 395 ~Le~L~l~~~ 404 (512)
+|+.|.+...
T Consensus 254 ~L~~L~L~~n 263 (362)
T 3goz_A 254 HLQTVYLDYD 263 (362)
T ss_dssp TCSEEEEEHH
T ss_pred CccEEEeccC
Confidence 9999999864
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.52 E-value=1.4e-07 Score=88.90 Aligned_cols=183 Identities=20% Similarity=0.227 Sum_probs=88.6
Q ss_pred CCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--
Q 043655 152 YFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY-- 229 (512)
Q Consensus 152 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~-- 229 (512)
...+|..+ .++|+.|+|+++.. ..+++. ....+++|++|+|+++.+..-.. .++ ..+++|++|+|.++.
T Consensus 28 l~~ip~~~--~~~l~~L~l~~n~l-~~~~~~--~~~~l~~L~~L~l~~n~l~~i~~--~~~--~~l~~L~~L~l~~n~l~ 98 (270)
T 2o6q_A 28 LTAIPSNI--PADTKKLDLQSNKL-SSLPSK--AFHRLTKLRLLYLNDNKLQTLPA--GIF--KELKNLETLWVTDNKLQ 98 (270)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCC-SCCCTT--SSSSCTTCCEEECCSSCCSCCCT--TTT--SSCTTCCEEECCSSCCC
T ss_pred CCccCCCC--CCCCCEEECcCCCC-CeeCHH--HhcCCCCCCEEECCCCccCeeCh--hhh--cCCCCCCEEECCCCcCC
Confidence 33455433 25677777776421 122221 12356777777777665543110 111 245666666666554
Q ss_pred cc-chhcccccccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccccCc
Q 043655 230 GL-KQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLENL 306 (512)
Q Consensus 230 ~l-~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~~~ 306 (512)
.+ ...+..+++|+.|++.++.. ..+.. . ..-..++|++|.++++.+... ..+..+
T Consensus 99 ~~~~~~~~~l~~L~~L~l~~n~l-~~~~~--------------------~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 156 (270)
T 2o6q_A 99 ALPIGVFDQLVNLAELRLDRNQL-KSLPP--------------------R-VFDSLTKLTYLSLGYNELQSLPKGVFDKL 156 (270)
T ss_dssp CCCTTTTTTCSSCCEEECCSSCC-CCCCT--------------------T-TTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCHhHcccccCCCEEECCCCcc-CeeCH--------------------H-HhCcCcCCCEEECCCCcCCccCHhHccCC
Confidence 11 12334556666666665531 11100 0 001235566666655544322 124556
Q ss_pred ccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEee
Q 043655 307 ASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTG 377 (512)
Q Consensus 307 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 377 (512)
++|+.+++..+...... ...+..+++|+.|+++.+.+..+.. .....+++|+.|+|..+
T Consensus 157 ~~L~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 157 TSLKELRLYNNQLKRVP--------EGAFDKLTELKTLKLDNNQLKRVPE----GAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp TTCCEEECCSSCCSCCC--------TTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSS
T ss_pred cccceeEecCCcCcEeC--------hhHhccCCCcCEEECCCCcCCcCCH----HHhccccCCCEEEecCC
Confidence 66666666544321110 1124556777777777665433221 13345677777777654
No 72
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.51 E-value=8.4e-08 Score=93.45 Aligned_cols=237 Identities=18% Similarity=0.099 Sum_probs=136.1
Q ss_pred cCCceeEEEeccCCCCCCC-cceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655 138 HNVEELDIEVATDDYFNLP-RCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS 216 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 216 (512)
.+++.|++.... ...++ ..+..+++|++|+|++|... .+++. ....+++|++|+|+++.+..-.. ..
T Consensus 54 ~~l~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~~~l~~L~~L~L~~n~l~~l~~-------~~ 121 (332)
T 2ft3_A 54 PDTTLLDLQNND--ISELRKDDFKGLQHLYALVLVNNKIS-KIHEK--AFSPLRKLQKLYISKNHLVEIPP-------NL 121 (332)
T ss_dssp TTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCC-EECGG--GSTTCTTCCEEECCSSCCCSCCS-------SC
T ss_pred CCCeEEECCCCc--CCccCHhHhhCCCCCcEEECCCCccC-ccCHh--HhhCcCCCCEEECCCCcCCccCc-------cc
Confidence 355665554322 22232 33456788888888875221 22221 23467888888888877654211 12
Q ss_pred Ccccceecccccc--cc-chhcccccccceeeeccccCc----cceeEeccCcceEEEeeeccccCCCceEEEeCCCcce
Q 043655 217 FPHLKKLDLDACY--GL-KQLKVGCRALEDLTLDNCIQL----CGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKV 289 (512)
Q Consensus 217 ~p~L~~L~L~~~~--~l-~~l~~~cp~Le~L~l~~c~~l----~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~ 289 (512)
+++|++|++.++. .+ ...+..+++|+.|++.++... ....+...+|+.|.+.++...... .. ..++|++
T Consensus 122 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~-~~---~~~~L~~ 197 (332)
T 2ft3_A 122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIP-KD---LPETLNE 197 (332)
T ss_dssp CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCC-SS---SCSSCSC
T ss_pred cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccC-cc---ccCCCCE
Confidence 4788888888775 22 234567888888888887531 111112237788888776433211 11 1268888
Q ss_pred EEeeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccccccccc
Q 043655 290 LNWEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFT 367 (512)
Q Consensus 290 L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~ 367 (512)
|.++++.+... ..+.++++|+.++++.+...+.. ...+..+++|+.|+++.+.+..+. .....++
T Consensus 198 L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~lp-----~~l~~l~ 264 (332)
T 2ft3_A 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE--------NGSLSFLPTLRELHLDNNKLSRVP-----AGLPDLK 264 (332)
T ss_dssp CBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC--------TTGGGGCTTCCEEECCSSCCCBCC-----TTGGGCT
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC--------hhHhhCCCCCCEEECCCCcCeecC-----hhhhcCc
Confidence 88888766443 34677888888888765432211 123567888999999877654322 2345678
Q ss_pred ccceEEEEeeccC-CcHHHHHH--HHhhCCCCcEEEEEe
Q 043655 368 NLKSLELHTGFNK-HNVQGLAC--LFRSSPSIHTLILKI 403 (512)
Q Consensus 368 ~L~~L~L~~~~~~-~~~~~l~~--~L~~cp~Le~L~l~~ 403 (512)
+|++|+|..+.-. .....+.. +....+.|+.|.+..
T Consensus 265 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred cCCEEECCCCCCCccChhHccccccccccccccceEeec
Confidence 8999988754211 11111000 011246778887764
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.50 E-value=1.3e-07 Score=99.82 Aligned_cols=213 Identities=21% Similarity=0.071 Sum_probs=112.3
Q ss_pred cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF 217 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 217 (512)
.+++.|++..+. ...+|. ..++|++|+|++|.. ..++. .+++|++|+|+++.+..-. ..+
T Consensus 81 ~~L~~L~Ls~N~--l~~lp~---~l~~L~~L~Ls~N~l-~~l~~------~l~~L~~L~L~~N~l~~lp--------~~l 140 (622)
T 3g06_A 81 PELRTLEVSGNQ--LTSLPV---LPPGLLELSIFSNPL-THLPA------LPSGLCKLWIFGNQLTSLP--------VLP 140 (622)
T ss_dssp TTCCEEEECSCC--CSCCCC---CCTTCCEEEECSCCC-CCCCC------CCTTCCEEECCSSCCSCCC--------CCC
T ss_pred CCCCEEEcCCCc--CCcCCC---CCCCCCEEECcCCcC-CCCCC------CCCCcCEEECCCCCCCcCC--------CCC
Confidence 456666665332 234554 457788888877421 12222 4678888888877665421 235
Q ss_pred cccceeccccccccchhcccccccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeecccc
Q 043655 218 PHLKKLDLDACYGLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAI 297 (512)
Q Consensus 218 p~L~~L~L~~~~~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~ 297 (512)
++|++|+|.++. +..+-...++|+.|.+.++. +..+.-..++|+.|.+.++.... +....++|+.|.+.++.+
T Consensus 141 ~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N~l~~-----l~~~~~~L~~L~L~~N~l 213 (622)
T 3g06_A 141 PGLQELSVSDNQ-LASLPALPSELCKLWAYNNQ-LTSLPMLPSGLQELSVSDNQLAS-----LPTLPSELYKLWAYNNRL 213 (622)
T ss_dssp TTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCC
T ss_pred CCCCEEECcCCc-CCCcCCccCCCCEEECCCCC-CCCCcccCCCCcEEECCCCCCCC-----CCCccchhhEEECcCCcc
Confidence 788888887774 33333345667777777664 22233223667777776654321 111235666666666554
Q ss_pred CCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEee
Q 043655 298 TASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTG 377 (512)
Q Consensus 298 ~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 377 (512)
.... ..+++|+.++++.+.... +...+++|+.|+++.+.+..+. +.+++|+.|+|..+
T Consensus 214 ~~l~--~~~~~L~~L~Ls~N~L~~------------lp~~l~~L~~L~Ls~N~L~~lp--------~~~~~L~~L~Ls~N 271 (622)
T 3g06_A 214 TSLP--ALPSGLKELIVSGNRLTS------------LPVLPSELKELMVSGNRLTSLP--------MLPSGLLSLSVYRN 271 (622)
T ss_dssp SSCC--CCCTTCCEEECCSSCCSC------------CCCCCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSS
T ss_pred cccC--CCCCCCCEEEccCCccCc------------CCCCCCcCcEEECCCCCCCcCC--------cccccCcEEeCCCC
Confidence 3222 124566666665442211 1134456666666655433211 14456666666543
Q ss_pred ccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655 378 FNKHNVQGLACLFRSSPSIHTLILKI 403 (512)
Q Consensus 378 ~~~~~~~~l~~~L~~cp~Le~L~l~~ 403 (512)
.-. .++..+..+|+|+.|+|..
T Consensus 272 ~L~----~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 272 QLT----RLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp CCC----SCCGGGGGSCTTCEEECCS
T ss_pred CCC----cCCHHHhhccccCEEEecC
Confidence 111 2233355666666666654
No 74
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.50 E-value=5.1e-08 Score=101.89 Aligned_cols=206 Identities=15% Similarity=0.138 Sum_probs=132.4
Q ss_pred ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccc---hhc
Q 043655 161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLK---QLK 235 (512)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~---~l~ 235 (512)
...+|+.|++++|... .+|. .....+++|++|+|+++.+.+.. .........+|+|+.|+|.++. ++. ..+
T Consensus 308 ~~~~L~~L~l~~n~l~-~ip~--~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 383 (549)
T 2z81_A 308 LLEKVKRITVENSKVF-LVPC--SFSQHLKSLEFLDLSENLMVEEY-LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383 (549)
T ss_dssp HSTTCCEEEEESSCCC-CCCH--HHHHHCTTCCEEECCSSCCCHHH-HHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHG
T ss_pred hcccceEEEeccCccc-cCCH--HHHhcCccccEEEccCCcccccc-ccchhhhhccccCcEEEccCCcccccccchhhh
Confidence 3578999999985321 2321 11236899999999998876521 0000001368999999999886 222 346
Q ss_pred ccccccceeeeccccCccceeE---eccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCCccccCcccceee
Q 043655 236 VGCRALEDLTLDNCIQLCGLDI---FGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEA 312 (512)
Q Consensus 236 ~~cp~Le~L~l~~c~~l~~~~v---~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l 312 (512)
..+++|+.|++.+|. +..+.- ..++|+.|.+.++....... . ..++|++|+++++.+... ..++++|+.+
T Consensus 384 ~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~-~---~~~~L~~L~Ls~N~l~~~--~~~l~~L~~L 456 (549)
T 2z81_A 384 LTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRVVKT-C---IPQTLEVLDVSNNNLDSF--SLFLPRLQEL 456 (549)
T ss_dssp GGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSCCSCCCT-T---SCTTCSEEECCSSCCSCC--CCCCTTCCEE
T ss_pred hcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCCcccccc-h---hcCCceEEECCCCChhhh--cccCChhcEE
Confidence 788999999999985 332221 12789999998875421110 0 126899999999876543 4688999999
Q ss_pred EEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHH---HHHHH
Q 043655 313 SVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQ---GLACL 389 (512)
Q Consensus 313 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~---~l~~~ 389 (512)
+++.+....- .. ...+++++.|+++.+.+..... .....+++|+.|+|..+...++.. .+..+
T Consensus 457 ~Ls~N~l~~i---------p~-~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~ 522 (549)
T 2z81_A 457 YISRNKLKTL---------PD-ASLFPVLLVMKISRNQLKSVPD----GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 522 (549)
T ss_dssp ECCSSCCSSC---------CC-GGGCTTCCEEECCSSCCCCCCT----TGGGGCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred ECCCCccCcC---------CC-cccCccCCEEecCCCccCCcCH----HHHhcCcccCEEEecCCCccCCCccHHHHHHH
Confidence 9987654311 11 2357889999999887544322 234578899999998764444433 34445
Q ss_pred Hh
Q 043655 390 FR 391 (512)
Q Consensus 390 L~ 391 (512)
++
T Consensus 523 l~ 524 (549)
T 2z81_A 523 LN 524 (549)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 75
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.49 E-value=1.8e-06 Score=90.41 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=40.5
Q ss_pred hcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655 336 SGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI 403 (512)
Q Consensus 336 ~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~ 403 (512)
..+++++.|+++.+.+.... +.....+++|+.|+|..+ .-.....++..+..+++|+.|++..
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSV----FQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTT----TTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred cCCCCceEEECCCCccccch----hhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCC
Confidence 56677888888776543211 124456788888888754 2223335566678888999888864
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.46 E-value=9.8e-09 Score=99.22 Aligned_cols=13 Identities=31% Similarity=0.345 Sum_probs=7.1
Q ss_pred HhhCCCCcEEEEE
Q 043655 390 FRSSPSIHTLILK 402 (512)
Q Consensus 390 L~~cp~Le~L~l~ 402 (512)
+..+|+|+.|++.
T Consensus 292 ~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 292 PDELPQVGNLSLK 304 (312)
T ss_dssp TTTSCEEEEEECT
T ss_pred HhhCCCCCEEecc
Confidence 3455666665554
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.46 E-value=9.2e-08 Score=90.51 Aligned_cols=97 Identities=19% Similarity=0.160 Sum_probs=59.1
Q ss_pred EEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceec
Q 043655 145 IEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLD 224 (512)
Q Consensus 145 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~ 224 (512)
+.........+|..+ .++|++|+|+++... .+++. ....+++|++|+|+++.+.+-.. ..+ ..+++|++|+
T Consensus 12 ~~c~~~~l~~ip~~l--~~~l~~L~ls~n~l~-~~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~--~~l~~L~~L~ 82 (276)
T 2z62_A 12 YQCMELNFYKIPDNL--PFSTKNLDLSFNPLR-HLGSY--SFFSFPELQVLDLSRCEIQTIED--GAY--QSLSHLSTLI 82 (276)
T ss_dssp EECTTSCCSSCCSSS--CTTCCEEECTTCCCC-EECTT--TTTTCTTCSEEECTTCCCCEECT--TTT--TTCTTCCEEE
T ss_pred EEecCCCccccCCCC--CCCccEEECCCCccc-ccCHh--HhccccCCcEEECCCCcCCccCH--HHc--cCCcCCCEEE
Confidence 333333445566644 257889999884221 23321 23468889999998887654211 111 3678888888
Q ss_pred ccccc--ccc-hhcccccccceeeecccc
Q 043655 225 LDACY--GLK-QLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 225 L~~~~--~l~-~l~~~cp~Le~L~l~~c~ 250 (512)
|.++. .+. ..+..+++|+.|++.++.
T Consensus 83 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 111 (276)
T 2z62_A 83 LTGNPIQSLALGAFSGLSSLQKLVAVETN 111 (276)
T ss_dssp CTTCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCCCccCccChhhhcCCccccEEECCCCC
Confidence 88775 222 345677888888888775
No 78
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.46 E-value=5.6e-08 Score=102.28 Aligned_cols=164 Identities=20% Similarity=0.117 Sum_probs=98.9
Q ss_pred ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhcccc
Q 043655 161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGC 238 (512)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~c 238 (512)
.++.|+.|.|.+| .+...+ ....+++|+.|+|+++.+.+...+ ..+++|+.|+|.++. .+. -+..+
T Consensus 41 ~L~~L~~L~l~~n--~i~~l~---~l~~l~~L~~L~Ls~N~l~~~~~l------~~l~~L~~L~Ls~N~l~~l~-~l~~l 108 (605)
T 1m9s_A 41 ELNSIDQIIANNS--DIKSVQ---GIQYLPNVTKLFLNGNKLTDIKPL------TNLKNLGWLFLDENKIKDLS-SLKDL 108 (605)
T ss_dssp HHTTCCCCBCTTC--CCCCCT---TGGGCTTCCEEECTTSCCCCCGGG------GGCTTCCEEECCSSCCCCCT-TSTTC
T ss_pred cCCCCCEEECcCC--CCCCCh---HHccCCCCCEEEeeCCCCCCChhh------ccCCCCCEEECcCCCCCCCh-hhccC
Confidence 4678888888874 232222 134689999999998887764332 368999999998875 333 34578
Q ss_pred cccceeeeccccCcccee-Ee-ccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCCccccCcccceeeEEee
Q 043655 239 RALEDLTLDNCIQLCGLD-IF-GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGF 316 (512)
Q Consensus 239 p~Le~L~l~~c~~l~~~~-v~-~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~ 316 (512)
++|+.|+|.+|... .+. +. .++|+.|.+.+|..... ...-..++|+.|.++++.+.....+..+++|+.++++.
T Consensus 109 ~~L~~L~Ls~N~l~-~l~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 109 KKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSK 184 (605)
T ss_dssp TTCCEEECTTSCCC-CCGGGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred CCCCEEEecCCCCC-CCccccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcC
Confidence 88999999888632 221 11 26677777766543211 00113466666666666554444456666666666655
Q ss_pred EEcccchhHHHHhHHHHHhhcCCcccEeeecchh
Q 043655 317 ILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPC 350 (512)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~ 350 (512)
+...+- ..+..+++|+.|+|+.+.
T Consensus 185 N~i~~l----------~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 185 NHISDL----------RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp SCCCBC----------GGGTTCTTCSEEECCSEE
T ss_pred CCCCCC----------hHHccCCCCCEEEccCCc
Confidence 432211 124556666666666544
No 79
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.43 E-value=1e-07 Score=102.48 Aligned_cols=71 Identities=15% Similarity=0.248 Sum_probs=44.7
Q ss_pred CCcceeccCCccEEEEecccCcc-----ccCC-CccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccc
Q 043655 155 LPRCVITSDSLRVFKLRSRYRGF-----RLPP-SSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDAC 228 (512)
Q Consensus 155 lp~~l~~~~~L~~L~L~~~~~~~-----~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~ 228 (512)
.|..+..+++|++|+|+++.... .+|. .......+++|++|+|+++.+.+... ..+ ..+++|+.|++.++
T Consensus 288 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~--~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS--NMF--TGLINLKYLSLSNS 363 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCT--TTT--TTCTTCCEEECTTC
T ss_pred ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCCh--hHh--ccccCCcEEECCCC
Confidence 34455678999999998743221 1221 01123468999999999988875321 112 36788888888765
Q ss_pred c
Q 043655 229 Y 229 (512)
Q Consensus 229 ~ 229 (512)
.
T Consensus 364 ~ 364 (680)
T 1ziw_A 364 F 364 (680)
T ss_dssp B
T ss_pred c
Confidence 3
No 80
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.42 E-value=1e-07 Score=85.29 Aligned_cols=78 Identities=15% Similarity=0.104 Sum_probs=46.4
Q ss_pred ccCCccEEEEecccCccc-cCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccc---cchhcc
Q 043655 161 TSDSLRVFKLRSRYRGFR-LPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYG---LKQLKV 236 (512)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~---l~~l~~ 236 (512)
.+++|++|+|+++ .+. ++ ....+++|++|+|+++.+.....+ ..+|+|++|++.++.- ....+.
T Consensus 42 ~l~~L~~L~l~~n--~i~~l~----~l~~l~~L~~L~l~~n~~~~~~~l------~~l~~L~~L~l~~n~l~~~~~~~l~ 109 (197)
T 4ezg_A 42 QMNSLTYITLANI--NVTDLT----GIEYAHNIKDLTINNIHATNYNPI------SGLSNLERLRIMGKDVTSDKIPNLS 109 (197)
T ss_dssp HHHTCCEEEEESS--CCSCCT----TGGGCTTCSEEEEESCCCSCCGGG------TTCTTCCEEEEECTTCBGGGSCCCT
T ss_pred hcCCccEEeccCC--CccChH----HHhcCCCCCEEEccCCCCCcchhh------hcCCCCCEEEeECCccCcccChhhc
Confidence 4678888998874 232 22 134678888888888755443222 3567777777766541 122234
Q ss_pred cccccceeeecccc
Q 043655 237 GCRALEDLTLDNCI 250 (512)
Q Consensus 237 ~cp~Le~L~l~~c~ 250 (512)
.+++|+.|++.+|.
T Consensus 110 ~l~~L~~L~Ls~n~ 123 (197)
T 4ezg_A 110 GLTSLTLLDISHSA 123 (197)
T ss_dssp TCTTCCEEECCSSB
T ss_pred CCCCCCEEEecCCc
Confidence 55666666666654
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.42 E-value=3.7e-07 Score=87.02 Aligned_cols=99 Identities=16% Similarity=0.122 Sum_probs=59.4
Q ss_pred CCCcceEEeeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccc
Q 043655 284 ASKLKVLNWEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFT 361 (512)
Q Consensus 284 ~p~L~~L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~ 361 (512)
.++|++|.++++.+... ..+..+++|+.++++......-. ...+..+++|+.|+++.+.++.+..
T Consensus 123 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~--------~~~~~~l~~L~~L~L~~N~l~~ip~----- 189 (290)
T 1p9a_G 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP--------AGLLNGLENLDTLLLQENSLYTIPK----- 189 (290)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC--------TTTTTTCTTCCEEECCSSCCCCCCT-----
T ss_pred CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC--------HHHhcCcCCCCEEECCCCcCCccCh-----
Confidence 46777777777655432 23456778888777654332110 1235677888999988877654332
Q ss_pred ccccccccceEEEEeecc--CCcHHHHHHHHhhCCC
Q 043655 362 NLHTFTNLKSLELHTGFN--KHNVQGLACLFRSSPS 395 (512)
Q Consensus 362 ~~~~~~~L~~L~L~~~~~--~~~~~~l~~~L~~cp~ 395 (512)
......+|++|.|..... .++..++..+++.-+.
T Consensus 190 ~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~~~ 225 (290)
T 1p9a_G 190 GFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAE 225 (290)
T ss_dssp TTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHTGG
T ss_pred hhcccccCCeEEeCCCCccCcCccHHHHHHHHhCcc
Confidence 333556889998876432 2445566666665443
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.42 E-value=5.3e-07 Score=86.87 Aligned_cols=152 Identities=20% Similarity=0.144 Sum_probs=88.1
Q ss_pred eeeeEEee-ccCcchhhHHHHHHHhcCCceeEEEeccCCCCCCCcce--eccCCccEEEEecccCccccCCC-ccccccC
Q 043655 114 IRVLRFRA-HLSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCV--ITSDSLRVFKLRSRYRGFRLPPS-SVVAGGF 189 (512)
Q Consensus 114 i~~l~l~~-~~~~~~~~~wi~~~~~~~v~~L~l~~~~~~~~~lp~~l--~~~~~L~~L~L~~~~~~~~~~~~-~~~~~~~ 189 (512)
++.+.+.. ......+...........+++|++....-. ...|..+ ..+++|++|+|++|......+.. ......+
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKIT-GTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCB-SCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEec-cchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 55555543 223334555555555567999988744321 2344444 56888999999985322111110 0112358
Q ss_pred cccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccc-----cc--hhcccccccceeeeccccCcccee-----E
Q 043655 190 RSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYG-----LK--QLKVGCRALEDLTLDNCIQLCGLD-----I 257 (512)
Q Consensus 190 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~-----l~--~l~~~cp~Le~L~l~~c~~l~~~~-----v 257 (512)
++|++|+|+++.+.... ...+ ..+++|++|+|.++.- +. .....+++|++|++.+|.. ..+. +
T Consensus 145 ~~L~~L~Ls~n~l~~~~--~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l 219 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFS--CEQV--RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAAL 219 (310)
T ss_dssp SCCCEEEEECCSSCCCC--TTSC--CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHH
T ss_pred cCCCEEEeeCCCcchhh--HHHh--ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHH
Confidence 89999999988875421 1111 3688999999988862 11 1224678899999988853 2211 0
Q ss_pred --eccCcceEEEeeec
Q 043655 258 --FGTKLERLRVASCF 271 (512)
Q Consensus 258 --~~~~L~~L~l~~c~ 271 (512)
..++|++|.+.++.
T Consensus 220 ~~~l~~L~~L~Ls~N~ 235 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNS 235 (310)
T ss_dssp HHHTCCCSSEECTTSC
T ss_pred HhcCCCCCEEECCCCC
Confidence 12566666666653
No 83
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.39 E-value=2.5e-07 Score=82.75 Aligned_cols=103 Identities=11% Similarity=0.087 Sum_probs=73.9
Q ss_pred cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeC--ccchhhhhcCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFN--QPCLLDLFTDS 215 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--~~~l~~l~~~~ 215 (512)
..++.|++.... ...+| .+..+++|++|+|++| .+..++ ....+++|++|+|+++.+.+ ...+ .
T Consensus 44 ~~L~~L~l~~n~--i~~l~-~l~~l~~L~~L~l~~n--~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~l------~ 109 (197)
T 4ezg_A 44 NSLTYITLANIN--VTDLT-GIEYAHNIKDLTINNI--HATNYN---PISGLSNLERLRIMGKDVTSDKIPNL------S 109 (197)
T ss_dssp HTCCEEEEESSC--CSCCT-TGGGCTTCSEEEEESC--CCSCCG---GGTTCTTCCEEEEECTTCBGGGSCCC------T
T ss_pred CCccEEeccCCC--ccChH-HHhcCCCCCEEEccCC--CCCcch---hhhcCCCCCEEEeECCccCcccChhh------c
Confidence 578888887543 23556 4667899999999995 333222 23469999999999988865 2222 4
Q ss_pred CCcccceeccccccc---cchhcccccccceeeeccccCccc
Q 043655 216 SFPHLKKLDLDACYG---LKQLKVGCRALEDLTLDNCIQLCG 254 (512)
Q Consensus 216 ~~p~L~~L~L~~~~~---l~~l~~~cp~Le~L~l~~c~~l~~ 254 (512)
.+|+|+.|++.++.- ....+..+++|+.|++.+|..+..
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~ 151 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC
T ss_pred CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc
Confidence 789999999999862 234456789999999999874443
No 84
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.39 E-value=6.2e-07 Score=93.98 Aligned_cols=83 Identities=16% Similarity=0.139 Sum_probs=46.5
Q ss_pred CCCcceEEeeccccCC--CccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhh-hcccccc
Q 043655 284 ASKLKVLNWEYNAITA--SSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEI-LSNRNYF 360 (512)
Q Consensus 284 ~p~L~~L~~~~~~~~~--~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~-~~~~~~~ 360 (512)
.++|++|.++++.+.. ...++++++|+.++++.+...+ .......+..+++++.|+++.+.+.. +..
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~---- 421 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN------FFKVALMTKNMSSLETLDVSLNSLNSHAYD---- 421 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB------TTHHHHTTTTCTTCCEEECTTSCCBSCCSS----
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC------cccchhhhcCCCCCCEEECCCCcCCCccCh----
Confidence 4567777776665543 1345667777777776543321 11233456777888888887765433 111
Q ss_pred cccccccccceEEEEe
Q 043655 361 TNLHTFTNLKSLELHT 376 (512)
Q Consensus 361 ~~~~~~~~L~~L~L~~ 376 (512)
.....+++|++|+|+.
T Consensus 422 ~~~~~l~~L~~L~l~~ 437 (562)
T 3a79_B 422 RTCAWAESILVLNLSS 437 (562)
T ss_dssp CCCCCCTTCCEEECCS
T ss_pred hhhcCcccCCEEECCC
Confidence 1233455666666654
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.38 E-value=7.5e-07 Score=84.95 Aligned_cols=98 Identities=16% Similarity=0.145 Sum_probs=68.4
Q ss_pred cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF 217 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 217 (512)
..++.|++.... ...++. +..+++|++|+|++|... .+++ ...+++|+.|+|+++.+.+...+ ..+
T Consensus 46 ~~L~~L~l~~~~--i~~~~~-~~~l~~L~~L~L~~n~l~-~~~~----l~~l~~L~~L~l~~n~l~~~~~l------~~l 111 (291)
T 1h6t_A 46 NSIDQIIANNSD--IKSVQG-IQYLPNVTKLFLNGNKLT-DIKP----LANLKNLGWLFLDENKVKDLSSL------KDL 111 (291)
T ss_dssp HTCCEEECTTSC--CCCCTT-GGGCTTCCEEECCSSCCC-CCGG----GTTCTTCCEEECCSSCCCCGGGG------TTC
T ss_pred CcccEEEccCCC--cccChh-HhcCCCCCEEEccCCccC-CCcc----cccCCCCCEEECCCCcCCCChhh------ccC
Confidence 456666665332 223443 556899999999985221 2222 45799999999999988764433 478
Q ss_pred cccceecccccc--ccchhcccccccceeeecccc
Q 043655 218 PHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 218 p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~ 250 (512)
++|+.|+|.++. .+. -+..+++|+.|++.+|.
T Consensus 112 ~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~ 145 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK 145 (291)
T ss_dssp TTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC
T ss_pred CCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc
Confidence 999999999886 443 34578999999998885
No 86
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.37 E-value=6.8e-07 Score=92.66 Aligned_cols=243 Identities=15% Similarity=0.126 Sum_probs=126.3
Q ss_pred cCceeeeEEeec-cCcchhhHHHHHHHhcCCceeEEEeccCCCCCCCcce-----eccCCccEEEEecccCccccCCCcc
Q 043655 111 HSYIRVLRFRAH-LSFSCLNGLIRRAIRHNVEELDIEVATDDYFNLPRCV-----ITSDSLRVFKLRSRYRGFRLPPSSV 184 (512)
Q Consensus 111 ~~~i~~l~l~~~-~~~~~~~~wi~~~~~~~v~~L~l~~~~~~~~~lp~~l-----~~~~~L~~L~L~~~~~~~~~~~~~~ 184 (512)
.+.++.+.+... .....+..+........++.|++....-. ..+|..+ ..+++|+.+++.++. +.+|...+
T Consensus 219 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~p~~~~~~~~~~l~~L~~l~l~~n~--~~~p~~~~ 295 (520)
T 2z7x_B 219 NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQ-GQLDFRDFDYSGTSLKALSIHQVVSDV--FGFPQSYI 295 (520)
T ss_dssp CTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEE-SCCCCCCCCCCSCCCCEEEEEEEEECC--CCSCTHHH
T ss_pred ccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccccc-CccccchhhcccccCceeEeccccccc--eecchhhh
Confidence 345777766542 22233444444444468888888754311 1456655 457788888888742 34442111
Q ss_pred ccc--cCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--c-cchhcccccccceeeeccccCcc--cee-
Q 043655 185 VAG--GFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--G-LKQLKVGCRALEDLTLDNCIQLC--GLD- 256 (512)
Q Consensus 185 ~~~--~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~-l~~l~~~cp~Le~L~l~~c~~l~--~~~- 256 (512)
.. .-++|+.|+++++.+.+.... ..+++|++|++.++. + +...+..+++|++|++.+|.... .+.
T Consensus 296 -~~~~~~~~L~~L~l~~n~l~~~~~~------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 368 (520)
T 2z7x_B 296 -YEIFSNMNIKNFTVSGTRMVHMLCP------SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE 368 (520)
T ss_dssp -HHHHHTCCCSEEEEESSCCCCCCCC------SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHH
T ss_pred -hcccccCceeEEEcCCCccccccch------hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchH
Confidence 00 114588888887766543211 367888888888775 1 23344567888888888775321 110
Q ss_pred -E-eccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCCccccCc-ccceeeEEeeEEcccchhHHHHhHHHH
Q 043655 257 -I-FGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENL-ASLHEASVGFILLHEDLTSAKLQSVSN 333 (512)
Q Consensus 257 -v-~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~~ 333 (512)
+ ..++|+.|.+.++..............++|++|.++++.+.... ...+ ++|+.++++.+.... +..
T Consensus 369 ~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~~L~~L~Ls~N~l~~---------ip~ 438 (520)
T 2z7x_B 369 MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI-FRCLPPRIKVLDLHSNKIKS---------IPK 438 (520)
T ss_dssp HHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGG-GGSCCTTCCEEECCSSCCCC---------CCG
T ss_pred HHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcch-hhhhcccCCEEECCCCcccc---------cch
Confidence 1 12567777776654321011111123466777776665543221 1112 466666665543221 111
Q ss_pred HhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEee
Q 043655 334 FLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTG 377 (512)
Q Consensus 334 ~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 377 (512)
.+..+++|+.|+++.+.+..+.. .....+++|+.|+|..+
T Consensus 439 ~~~~l~~L~~L~L~~N~l~~l~~----~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 439 QVVKLEALQELNVASNQLKSVPD----GIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp GGGGCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSS
T ss_pred hhhcCCCCCEEECCCCcCCccCH----HHhccCCcccEEECcCC
Confidence 23356666677766665432221 12345566666666554
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.33 E-value=2.7e-07 Score=86.96 Aligned_cols=192 Identities=20% Similarity=0.191 Sum_probs=118.0
Q ss_pred CccEEEEecccCccc-cCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccc-hhccccc
Q 043655 164 SLRVFKLRSRYRGFR-LPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLK-QLKVGCR 239 (512)
Q Consensus 164 ~L~~L~L~~~~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~-~l~~~cp 239 (512)
+++.++++++ .++ +|. . -.++|++|+|+++.+..-.. ..+ ..+++|++|+|.++. .+. .++..++
T Consensus 17 ~~~~l~~~~~--~l~~ip~-~----~~~~l~~L~l~~n~l~~~~~--~~~--~~l~~L~~L~l~~n~l~~i~~~~~~~l~ 85 (270)
T 2o6q_A 17 NKNSVDCSSK--KLTAIPS-N----IPADTKKLDLQSNKLSSLPS--KAF--HRLTKLRLLYLNDNKLQTLPAGIFKELK 85 (270)
T ss_dssp TTTEEECTTS--CCSSCCS-C----CCTTCSEEECCSSCCSCCCT--TSS--SSCTTCCEEECCSSCCSCCCTTTTSSCT
T ss_pred CCCEEEccCC--CCCccCC-C----CCCCCCEEECcCCCCCeeCH--HHh--cCCCCCCEEECCCCccCeeChhhhcCCC
Confidence 4677887763 232 332 1 13579999999887765321 011 367888888888765 222 3345678
Q ss_pred ccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccccCcccceeeEEeeE
Q 043655 240 ALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLENLASLHEASVGFI 317 (512)
Q Consensus 240 ~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~~~~~L~~l~l~~~ 317 (512)
+|+.|++.++.. ..+... .....++|++|.++++.+... ..+.++++|+.++++.+
T Consensus 86 ~L~~L~l~~n~l-~~~~~~---------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 86 NLETLWVTDNKL-QALPIG---------------------VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp TCCEEECCSSCC-CCCCTT---------------------TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEECCCCcC-CcCCHh---------------------HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 888888877642 111100 001246777777777655433 23678999999999876
Q ss_pred EcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCc
Q 043655 318 LLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIH 397 (512)
Q Consensus 318 ~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le 397 (512)
...... ...+..+++|+.|+++.+.+..+.. .....+++|++|+|..+.-. . .....+..+++|+
T Consensus 144 ~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~-~--~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 144 ELQSLP--------KGVFDKLTSLKELRLYNNQLKRVPE----GAFDKLTELKTLKLDNNQLK-R--VPEGAFDSLEKLK 208 (270)
T ss_dssp CCCCCC--------TTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSSCCS-C--CCTTTTTTCTTCC
T ss_pred cCCccC--------HhHccCCcccceeEecCCcCcEeCh----hHhccCCCcCEEECCCCcCC-c--CCHHHhccccCCC
Confidence 543211 1236778999999998876544322 23456789999999764221 1 1123467899999
Q ss_pred EEEEEe
Q 043655 398 TLILKI 403 (512)
Q Consensus 398 ~L~l~~ 403 (512)
.|.+..
T Consensus 209 ~L~l~~ 214 (270)
T 2o6q_A 209 MLQLQE 214 (270)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 998864
No 88
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.31 E-value=7.1e-07 Score=86.03 Aligned_cols=195 Identities=19% Similarity=0.192 Sum_probs=127.0
Q ss_pred hcCCceeEEEeccCCCCCCCcce--eccCCccEEEEecccCccccCCCccccccC-----cccceEEeeeEEeeCccchh
Q 043655 137 RHNVEELDIEVATDDYFNLPRCV--ITSDSLRVFKLRSRYRGFRLPPSSVVAGGF-----RSLHTLSLSLVILFNQPCLL 209 (512)
Q Consensus 137 ~~~v~~L~l~~~~~~~~~lp~~l--~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~-----~~L~~L~L~~~~~~~~~~l~ 209 (512)
-.++++|++....-. ..+|..+ ..+++|++|+|++|. +.-.+.. ...+ ++|++|+|+++.+.+...
T Consensus 94 l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~--~~~l~~~~~~~L~~L~L~~N~l~~~~~-- 166 (312)
T 1wwl_A 94 ISGLQELTLENLEVT-GTAPPPLLEATGPDLNILNLRNVS--WATRDAW--LAELQQWLKPGLKVLSIAQAHSLNFSC-- 166 (312)
T ss_dssp TSCCCEEEEEEEBCB-SCCCCCSSSCCSCCCSEEEEESCB--CSSSSSH--HHHHHTTCCTTCCEEEEESCSCCCCCT--
T ss_pred cCCccEEEccCCccc-chhHHHHHHhcCCCccEEEccCCC--CcchhHH--HHHHHHhhcCCCcEEEeeCCCCccchH--
Confidence 368999998855421 2456655 468999999999953 2221211 1233 899999999998865321
Q ss_pred hhhcCCCCcccceeccccccccc------hh-cccccccceeeeccccCcc--ceeE----eccCcceEEEeeeccccCC
Q 043655 210 DLFTDSSFPHLKKLDLDACYGLK------QL-KVGCRALEDLTLDNCIQLC--GLDI----FGTKLERLRVASCFDAYCD 276 (512)
Q Consensus 210 ~l~~~~~~p~L~~L~L~~~~~l~------~l-~~~cp~Le~L~l~~c~~l~--~~~v----~~~~L~~L~l~~c~~~~~~ 276 (512)
..+ ..+++|++|+|.++.-.. .+ ...+++|++|++.+|.--. .+.. ..++|+.|.+.++......
T Consensus 167 ~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 167 EQV--RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp TTC--CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred HHh--ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 111 478999999999986211 11 2678999999999996321 1111 1279999999987543221
Q ss_pred CceEEEeCCCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhh
Q 043655 277 KSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCI 351 (512)
Q Consensus 277 ~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 351 (512)
........++|++|.++++.+..... .-.++|+.++++.....+. .. +..+++++.|+++.+.+
T Consensus 245 ~~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~~~L~~L~Ls~N~l~~~---------p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 245 GAPSCDWPSQLNSLNLSFTGLKQVPK-GLPAKLSVLDLSYNRLDRN---------PS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CCSCCCCCTTCCEEECTTSCCSSCCS-SCCSEEEEEECCSSCCCSC---------CC-TTTSCEEEEEECTTCTT
T ss_pred chhhhhhcCCCCEEECCCCccChhhh-hccCCceEEECCCCCCCCC---------hh-HhhCCCCCEEeccCCCC
Confidence 11122246899999999987753321 1127899999986654321 11 66789999999987754
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.31 E-value=2e-07 Score=88.10 Aligned_cols=173 Identities=17% Similarity=0.118 Sum_probs=112.2
Q ss_pred ccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhcccccccceeeeccccCccceeEeccCcce
Q 043655 187 GGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLER 264 (512)
Q Consensus 187 ~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~ 264 (512)
..+++|+.|.+.++.+.....+ ..+|+|+.|+|.++. ++. -+..+++|+.|++.+|.. ..+...
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l------~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l-~~~~~~------ 103 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGI------QYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQL-QSLPNG------ 103 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTG------GGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCC-CCCCTT------
T ss_pred ccccceeeeeeCCCCccccccc------ccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCcc-CccChh------
Confidence 3588899999988877654433 357888888888775 332 345677888888877742 111100
Q ss_pred EEEeeeccccCCCceEEEeCCCcceEEeeccccCCCc--cccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCccc
Q 043655 265 LRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASS--SLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHAR 342 (512)
Q Consensus 265 L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~--~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~ 342 (512)
..-..++|++|.+.++.+.... .+.++++|+.+++..+...+-. ...+..+++|+
T Consensus 104 ---------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~~~~l~~L~ 160 (272)
T 3rfs_A 104 ---------------VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP--------KGVFDKLTNLT 160 (272)
T ss_dssp ---------------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--------TTTTTTCTTCC
T ss_pred ---------------HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccC--------HHHhccCccCC
Confidence 0012467777777776654332 3678999999999876543211 12467789999
Q ss_pred EeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655 343 SLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI 403 (512)
Q Consensus 343 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~ 403 (512)
.|+++.+.+..+.. .....+++|++|+|..+.-.. .....+..+++|+.|++..
T Consensus 161 ~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 161 ELDLSYNQLQSLPE----GVFDKLTQLKDLRLYQNQLKS---VPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp EEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSC---CCTTTTTTCTTCCEEECCS
T ss_pred EEECCCCCcCccCH----HHhcCCccCCEEECCCCcCCc---cCHHHHhCCcCCCEEEccC
Confidence 99999886543221 234577899999997642221 1124567899999999975
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.30 E-value=5e-07 Score=95.03 Aligned_cols=163 Identities=17% Similarity=0.101 Sum_probs=109.4
Q ss_pred cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF 217 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 217 (512)
..++.|.+.... ...+| .+..+++|+.|+|++|... .+++ ...+++|+.|+|+++.+.+...+ ..+
T Consensus 43 ~~L~~L~l~~n~--i~~l~-~l~~l~~L~~L~Ls~N~l~-~~~~----l~~l~~L~~L~Ls~N~l~~l~~l------~~l 108 (605)
T 1m9s_A 43 NSIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLT-DIKP----LTNLKNLGWLFLDENKIKDLSSL------KDL 108 (605)
T ss_dssp TTCCCCBCTTCC--CCCCT-TGGGCTTCCEEECTTSCCC-CCGG----GGGCTTCCEEECCSSCCCCCTTS------TTC
T ss_pred CCCCEEECcCCC--CCCCh-HHccCCCCCEEEeeCCCCC-CChh----hccCCCCCEEECcCCCCCCChhh------ccC
Confidence 456666654322 22333 3556888999999885211 2222 34688999999998887764332 468
Q ss_pred cccceecccccc--ccchhcccccccceeeeccccCcccee-Ee-ccCcceEEEeeeccccCCCceEEEeCCCcceEEee
Q 043655 218 PHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLD-IF-GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWE 293 (512)
Q Consensus 218 p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~-v~-~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~ 293 (512)
++|+.|+|.++. .+.. +..+++|+.|+|.+|.. ..+. +. .++|+.|.+.+|...... . ....++|+.|.++
T Consensus 109 ~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKI-TDITVLSRLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLS 183 (605)
T ss_dssp TTCCEEECTTSCCCCCGG-GGGCTTCSEEECCSSCC-CCCGGGGSCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECC
T ss_pred CCCCEEEecCCCCCCCcc-ccCCCccCEEECCCCcc-CCchhhcccCCCCEEECcCCcCCCch--h-hccCCCCCEEECc
Confidence 899999998876 4432 45788999999988853 2221 11 278899988887543211 1 1257889999999
Q ss_pred ccccCCCccccCcccceeeEEeeEEc
Q 043655 294 YNAITASSSLENLASLHEASVGFILL 319 (512)
Q Consensus 294 ~~~~~~~~~l~~~~~L~~l~l~~~~~ 319 (512)
++.+.....+..+++|+.++++.+..
T Consensus 184 ~N~i~~l~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 184 KNHISDLRALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp SSCCCBCGGGTTCTTCSEEECCSEEE
T ss_pred CCCCCCChHHccCCCCCEEEccCCcC
Confidence 88776666678889999999887654
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.30 E-value=7.9e-07 Score=85.61 Aligned_cols=169 Identities=14% Similarity=0.121 Sum_probs=100.8
Q ss_pred cCCceeEEEeccCCCCCCC----cceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhc
Q 043655 138 HNVEELDIEVATDDYFNLP----RCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFT 213 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp----~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~ 213 (512)
..++.|++....-.. ..| ..+..+++|++|+|++|.. ..+++. ....+++|++|+|+++.+.+..++.....
T Consensus 117 ~~L~~L~Ls~n~i~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 192 (310)
T 4glp_A 117 LALSSLRLRNVSWAT-GRSWLAELQQWLKPGLKVLSIAQAHS-PAFSCE--QVRAFPALTSLDLSDNPGLGERGLMAALC 192 (310)
T ss_dssp BCCSSCEEESCCCSS-TTSSHHHHHTTBCSCCCEEEEECCSS-CCCCTT--SCCCCTTCCEEECCSCTTCHHHHHHTTSC
T ss_pred CCCCEEEeecccccc-hhhhhHHHHhhhccCCCEEEeeCCCc-chhhHH--HhccCCCCCEEECCCCCCccchhhhHHHh
Confidence 678888888543211 111 2233688999999999532 123322 23478999999999998654322221111
Q ss_pred CCCCcccceecccccc--ccch----hcccccccceeeeccccCcccee--Eec----cCcceEEEeeeccccCCCceEE
Q 043655 214 DSSFPHLKKLDLDACY--GLKQ----LKVGCRALEDLTLDNCIQLCGLD--IFG----TKLERLRVASCFDAYCDKSWVK 281 (512)
Q Consensus 214 ~~~~p~L~~L~L~~~~--~l~~----l~~~cp~Le~L~l~~c~~l~~~~--v~~----~~L~~L~l~~c~~~~~~~~~~~ 281 (512)
...+|+|++|+|.++. .+.. +...+++|+.|+|.++.-..... +.. ++|++|.+.++..... ...+
T Consensus 193 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~- 270 (310)
T 4glp_A 193 PHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGL- 270 (310)
T ss_dssp TTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCC-
T ss_pred hhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhh-
Confidence 1468999999999986 2333 35678999999999986322211 111 5788888877644311 1111
Q ss_pred EeCCCcceEEeeccccCCCccccCcccceeeEE
Q 043655 282 IDASKLKVLNWEYNAITASSSLENLASLHEASV 314 (512)
Q Consensus 282 i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l 314 (512)
.++|+.|+++++.+.....+..+++|+.+++
T Consensus 271 --~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L 301 (310)
T 4glp_A 271 --PAKLRVLDLSSNRLNRAPQPDELPEVDNLTL 301 (310)
T ss_dssp --CSCCSCEECCSCCCCSCCCTTSCCCCSCEEC
T ss_pred --cCCCCEEECCCCcCCCCchhhhCCCccEEEC
Confidence 2677777777665543222344444444444
No 92
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.27 E-value=2.1e-07 Score=88.06 Aligned_cols=196 Identities=22% Similarity=0.152 Sum_probs=122.8
Q ss_pred CcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccc-hhcccccccceeeeccccCcccee---E-eccC
Q 043655 189 FRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLK-QLKVGCRALEDLTLDNCIQLCGLD---I-FGTK 261 (512)
Q Consensus 189 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~-~l~~~cp~Le~L~l~~c~~l~~~~---v-~~~~ 261 (512)
.++|++|+|+++.+.+... ..+ ..+++|+.|+|.++. .+. ..+..+++|+.|++.++.. ..+. + ..++
T Consensus 27 ~~~l~~L~ls~n~l~~~~~--~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~ 101 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGS--YSF--FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSS 101 (276)
T ss_dssp CTTCCEEECTTCCCCEECT--TTT--TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTT
T ss_pred CCCccEEECCCCcccccCH--hHh--ccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc-CccChhhhcCCcc
Confidence 3579999999988765321 011 478999999999985 222 2456789999999999863 2222 1 1278
Q ss_pred cceEEEeeeccccCCCceEEEeCCCcceEEeeccccCC---CccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcC
Q 043655 262 LERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITA---SSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGL 338 (512)
Q Consensus 262 L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~---~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l 338 (512)
|+.|.+.++......... ....++|++|.++++.+.. ...+.++++|+.++++.+...+... ....-+..+
T Consensus 102 L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L 175 (276)
T 2z62_A 102 LQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-----TDLRVLHQM 175 (276)
T ss_dssp CCEEECTTSCCCCSTTCC-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-----GGGHHHHTC
T ss_pred ccEEECCCCCccccCchh-cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH-----HHhhhhhhc
Confidence 999999887543221111 1256899999999887654 2357788999999998765432110 001123334
Q ss_pred Cccc-EeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655 339 SHAR-SLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKI 403 (512)
Q Consensus 339 ~~l~-~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~ 403 (512)
+.+. .|+++...+..+.. ......+|++|+|..+.-. . ....++..+++|++|++..
T Consensus 176 ~~l~l~L~ls~n~l~~~~~-----~~~~~~~L~~L~L~~n~l~-~--~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 176 PLLNLSLDLSLNPMNFIQP-----GAFKEIRLKELALDTNQLK-S--VPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp TTCCEEEECCSSCCCEECT-----TSSCSCCEEEEECCSSCCS-C--CCTTTTTTCCSCCEEECCS
T ss_pred cccceeeecCCCcccccCc-----cccCCCcccEEECCCCcee-e--cCHhHhcccccccEEEccC
Confidence 4333 77787766443321 1123348999999764221 1 1124567899999999864
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.21 E-value=8.4e-07 Score=87.03 Aligned_cols=230 Identities=15% Similarity=0.127 Sum_probs=129.5
Q ss_pred EEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeC---ccchhhhhcCCCCcccc
Q 043655 145 IEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFN---QPCLLDLFTDSSFPHLK 221 (512)
Q Consensus 145 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~---~~~l~~l~~~~~~p~L~ 221 (512)
+.........+|..+ .+++++|+|+++.. -.+++.. ..++++|++|+|+++.+.+ ...+ .++++|+
T Consensus 14 v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i-~~i~~~~--f~~l~~L~~L~Ls~N~i~~~i~~~~f------~~L~~l~ 82 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL--PRNAIELRFVLTKL-RVIQKGA--FSGFGDLEKIEISQNDVLEVIEADVF------SNLPKLH 82 (350)
T ss_dssp EEEESTTCCSCCTTC--CTTCSEEEEESCCC-SEECTTS--STTCTTCCEEEEECCTTCCEECTTSB------CSCTTCC
T ss_pred EEecCCCCCccCcCc--CCCCCEEEccCCcC-CCcCHHH--HcCCCCCCEEECcCCCCCCccChhHh------hcchhhh
Confidence 333344455677665 36789999998532 2344332 3578999999999886543 2122 3677777
Q ss_pred eeccccccccc----hhcccccccceeeeccccCccce---eEeccCcceEEEeeeccccC-CCceEEEeCCCcceEEee
Q 043655 222 KLDLDACYGLK----QLKVGCRALEDLTLDNCIQLCGL---DIFGTKLERLRVASCFDAYC-DKSWVKIDASKLKVLNWE 293 (512)
Q Consensus 222 ~L~L~~~~~l~----~l~~~cp~Le~L~l~~c~~l~~~---~v~~~~L~~L~l~~c~~~~~-~~~~~~i~~p~L~~L~~~ 293 (512)
++...++..+. ..+..+++|+.|++.++...... .....++..|.+.++..... ....+.-....++.|.++
T Consensus 83 ~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~ 162 (350)
T 4ay9_X 83 EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162 (350)
T ss_dssp EEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred hhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence 76665554333 34567899999999988532211 12235666677765432210 000000112457778888
Q ss_pred ccccCCC-ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceE
Q 043655 294 YNAITAS-SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSL 372 (512)
Q Consensus 294 ~~~~~~~-~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L 372 (512)
++.+... .......+|.++.+..+...+... ...+..+++|+.|+++.+.++.+.. ..|.+|++|
T Consensus 163 ~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~-------~~~f~~l~~L~~LdLs~N~l~~lp~-------~~~~~L~~L 228 (350)
T 4ay9_X 163 KNGIQEIHNSAFNGTQLDELNLSDNNNLEELP-------NDVFHGASGPVILDISRTRIHSLPS-------YGLENLKKL 228 (350)
T ss_dssp SSCCCEECTTSSTTEEEEEEECTTCTTCCCCC-------TTTTTTEECCSEEECTTSCCCCCCS-------SSCTTCCEE
T ss_pred cccccCCChhhccccchhHHhhccCCcccCCC-------HHHhccCcccchhhcCCCCcCccCh-------hhhccchHh
Confidence 7665322 112234567777664322111110 1246788999999999887554432 246678887
Q ss_pred EEEeeccCCcHHHHHHHHhhCCCCcEEEEEe
Q 043655 373 ELHTGFNKHNVQGLACLFRSSPSIHTLILKI 403 (512)
Q Consensus 373 ~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~ 403 (512)
.+.....-. .++. +..+++|+.+++..
T Consensus 229 ~~l~~~~l~---~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 229 RARSTYNLK---KLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp ECTTCTTCC---CCCC-TTTCCSCCEEECSC
T ss_pred hhccCCCcC---cCCC-chhCcChhhCcCCC
Confidence 764432111 1221 56788888888753
No 94
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.19 E-value=2.9e-06 Score=79.57 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=21.9
Q ss_pred ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeC
Q 043655 161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFN 204 (512)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 204 (512)
.+++|++|+|++| .+.-.+ ....+++|++|+|+++.+.+
T Consensus 39 ~l~~L~~L~l~~n--~i~~l~---~l~~l~~L~~L~L~~N~i~~ 77 (263)
T 1xeu_A 39 ELSGVQNFNGDNS--NIQSLA---GMQFFTNLKELHLSHNQISD 77 (263)
T ss_dssp HHTTCSEEECTTS--CCCCCT---TGGGCTTCCEEECCSSCCCC
T ss_pred hcCcCcEEECcCC--Ccccch---HHhhCCCCCEEECCCCccCC
Confidence 4667777777763 222111 12356677777776666554
No 95
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.16 E-value=1.1e-06 Score=83.88 Aligned_cols=177 Identities=18% Similarity=0.072 Sum_probs=96.0
Q ss_pred CCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--
Q 043655 152 YFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY-- 229 (512)
Q Consensus 152 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~-- 229 (512)
...+|..+. ++++.|+|++|... .+++. ....+++|++|+|+++.+..-... ..+++|+.|+|.++.
T Consensus 22 l~~ip~~~~--~~l~~L~L~~N~l~-~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~------~~l~~L~~L~Ls~N~l~ 90 (290)
T 1p9a_G 22 LTALPPDLP--KDTTILHLSENLLY-TFSLA--TLMPYTRLTQLNLDRAELTKLQVD------GTLPVLGTLDLSHNQLQ 90 (290)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCS-EEEGG--GGTTCTTCCEEECTTSCCCEEECC------SCCTTCCEEECCSSCCS
T ss_pred CCcCCCCCC--CCCCEEEcCCCcCC-ccCHH--HhhcCCCCCEEECCCCccCcccCC------CCCCcCCEEECCCCcCC
Confidence 344554443 56777777764221 12111 123577777777777665542211 357777777777664
Q ss_pred ccchhcccccccceeeeccccCcccee---Ee-ccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccc
Q 043655 230 GLKQLKVGCRALEDLTLDNCIQLCGLD---IF-GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSL 303 (512)
Q Consensus 230 ~l~~l~~~cp~Le~L~l~~c~~l~~~~---v~-~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l 303 (512)
.+...+..+++|+.|++.++.. ..+. +. .++|+.|.+.++...... ..+.-..++|+.|.++++.+... ..+
T Consensus 91 ~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 168 (290)
T 1p9a_G 91 SLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTELPAGLL 168 (290)
T ss_dssp SCCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCSCCCTTTT
T ss_pred cCchhhccCCCCCEEECCCCcC-cccCHHHHcCCCCCCEEECCCCCCCccC-hhhcccccCCCEEECCCCcCCccCHHHh
Confidence 3444445667777777777642 2221 11 256777777765432111 00011356788888877765433 224
Q ss_pred cCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchh
Q 043655 304 ENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPC 350 (512)
Q Consensus 304 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~ 350 (512)
..+++|+.++++...... +...+...++++.|.+.++.
T Consensus 169 ~~l~~L~~L~L~~N~l~~---------ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 169 NGLENLDTLLLQENSLYT---------IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCTTCCEEECCSSCCCC---------CCTTTTTTCCCSEEECCSCC
T ss_pred cCcCCCCEEECCCCcCCc---------cChhhcccccCCeEEeCCCC
Confidence 567788888776543321 11123344567777776543
No 96
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.13 E-value=1.7e-06 Score=79.84 Aligned_cols=187 Identities=12% Similarity=0.099 Sum_probs=103.2
Q ss_pred CCccEEEEecccCccccCCCccccccCcccceEEeeeEE-eeC--ccchhhhhcCCCCcccceeccccccccc----hhc
Q 043655 163 DSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVI-LFN--QPCLLDLFTDSSFPHLKKLDLDACYGLK----QLK 235 (512)
Q Consensus 163 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~--~~~l~~l~~~~~~p~L~~L~L~~~~~l~----~l~ 235 (512)
++|++|+|+++.. -.+++.. ..++++|++|+|+++. +.. ...+ ..+++|+.|++.+|..+. ..+
T Consensus 31 ~~l~~L~l~~n~l-~~i~~~~--~~~l~~L~~L~l~~n~~l~~i~~~~f------~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 31 PSTQTLKLIETHL-RTIPSHA--FSNLPNISRIYVSIDVTLQQLESHSF------YNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp TTCCEEEEESCCC-SEECTTT--TTTCTTCCEEEEECCSSCCEECTTTE------ESCTTCCEEEEEEETTCCEECTTSE
T ss_pred CcccEEEEeCCcc-eEECHHH--ccCCCCCcEEeCCCCCCcceeCHhHc------CCCcCCcEEECCCCCCeeEcCHHHh
Confidence 3677777777421 1233211 2357777777777764 432 1112 257777777777643222 234
Q ss_pred ccccccceeeeccccCcccee-Ee-ccCcc---eEEEeee-ccccCCCceEEEeCCCcc-eEEeeccccCCC--ccccCc
Q 043655 236 VGCRALEDLTLDNCIQLCGLD-IF-GTKLE---RLRVASC-FDAYCDKSWVKIDASKLK-VLNWEYNAITAS--SSLENL 306 (512)
Q Consensus 236 ~~cp~Le~L~l~~c~~l~~~~-v~-~~~L~---~L~l~~c-~~~~~~~~~~~i~~p~L~-~L~~~~~~~~~~--~~l~~~ 306 (512)
..+++|+.|++.++.. ..+. +. .++|+ .|.+.++ ........ ..-..++|+ +|.++++.+... ..+..
T Consensus 102 ~~l~~L~~L~l~~n~l-~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~-~~~~l~~L~~~L~l~~n~l~~i~~~~~~~- 178 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPVN-AFQGLCNETLTLKLYNNGFTSVQGYAFNG- 178 (239)
T ss_dssp ECCTTCCEEEEEEECC-CSCCCCTTCCBCCSEEEEEEESCTTCCEECTT-TTTTTBSSEEEEECCSCCCCEECTTTTTT-
T ss_pred CCCCCCCEEeCCCCCC-ccccccccccccccccEEECCCCcchhhcCcc-cccchhcceeEEEcCCCCCcccCHhhcCC-
Confidence 4677788888877742 1121 11 14555 7777765 22110000 001356788 888877655321 12233
Q ss_pred ccceeeEEeeEE-cccchhHHHHhHHHHHhhcC-CcccEeeecchhhhhhcccccccccccccccceEEEEe
Q 043655 307 ASLHEASVGFIL-LHEDLTSAKLQSVSNFLSGL-SHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHT 376 (512)
Q Consensus 307 ~~L~~l~l~~~~-~~~~~~~~~~~~~~~~l~~l-~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 376 (512)
++|+++++..+. ...-. ...+..+ ++++.|+++...+..+.. ..|++|+.|.+..
T Consensus 179 ~~L~~L~L~~n~~l~~i~--------~~~~~~l~~~L~~L~l~~N~l~~l~~-------~~~~~L~~L~l~~ 235 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVID--------KDAFGGVYSGPSLLDVSQTSVTALPS-------KGLEHLKELIARN 235 (239)
T ss_dssp CEEEEEECTTCTTCCEEC--------TTTTTTCSBCCSEEECTTCCCCCCCC-------TTCTTCSEEECTT
T ss_pred CCCCEEEcCCCCCcccCC--------HHHhhccccCCcEEECCCCccccCCh-------hHhccCceeeccC
Confidence 688888887552 21110 1235667 899999998876544321 2688999998754
No 97
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.12 E-value=8.2e-07 Score=76.84 Aligned_cols=45 Identities=11% Similarity=0.199 Sum_probs=20.2
Q ss_pred CCccEEEEecccCccccCCCcc-ccccCcccceEEeeeEEeeCccchhhh
Q 043655 163 DSLRVFKLRSRYRGFRLPPSSV-VAGGFRSLHTLSLSLVILFNQPCLLDL 211 (512)
Q Consensus 163 ~~L~~L~L~~~~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~l~~l 211 (512)
-.|+.|+|++| . +.+.++ ...++++|++|+|++|...++.++..+
T Consensus 61 ~~L~~LDLs~~--~--Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L 106 (176)
T 3e4g_A 61 YKIQAIDATDS--C--IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL 106 (176)
T ss_dssp CCEEEEEEESC--C--CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH
T ss_pred ceEeEEeCcCC--C--ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH
Confidence 35666666663 1 111111 123455555555555544444444433
No 98
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.11 E-value=6.6e-06 Score=83.63 Aligned_cols=115 Identities=15% Similarity=0.007 Sum_probs=50.7
Q ss_pred cCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhcccccccceeeeccccCccceeEeccCcceE
Q 043655 188 GFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERL 265 (512)
Q Consensus 188 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L 265 (512)
.+++|++|+++++.+.+-. ...++|++|++.++. ++.. +..+++|+.|++.+|.. ..+....++|+.|
T Consensus 151 ~l~~L~~L~l~~N~l~~lp--------~~~~~L~~L~L~~n~l~~l~~-~~~l~~L~~L~l~~N~l-~~l~~~~~~L~~L 220 (454)
T 1jl5_A 151 NSSFLKIIDVDNNSLKKLP--------DLPPSLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSL-KKLPDLPLSLESI 220 (454)
T ss_dssp TCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCC-SSCCCCCTTCCEE
T ss_pred CCCCCCEEECCCCcCcccC--------CCcccccEEECcCCcCCcCcc-ccCCCCCCEEECCCCcC-CcCCCCcCcccEE
Confidence 4555555555555443211 122455555555543 2221 34455566666655542 1121122456666
Q ss_pred EEeeeccccCCCceEEEeCCCcceEEeeccccCCCccccCcccceeeEEeeE
Q 043655 266 RVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFI 317 (512)
Q Consensus 266 ~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~ 317 (512)
.+.+|..... .. ....++|++|.++++.+.... ...++|+.++++.+
T Consensus 221 ~l~~n~l~~l--p~-~~~l~~L~~L~l~~N~l~~l~--~~~~~L~~L~l~~N 267 (454)
T 1jl5_A 221 VAGNNILEEL--PE-LQNLPFLTTIYADNNLLKTLP--DLPPSLEALNVRDN 267 (454)
T ss_dssp ECCSSCCSSC--CC-CTTCTTCCEEECCSSCCSSCC--SCCTTCCEEECCSS
T ss_pred ECcCCcCCcc--cc-cCCCCCCCEEECCCCcCCccc--ccccccCEEECCCC
Confidence 6655532210 11 113455666666655443211 12345555555543
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.11 E-value=2.4e-06 Score=79.45 Aligned_cols=54 Identities=13% Similarity=0.243 Sum_probs=31.9
Q ss_pred hhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccC---CcHHHHHHHHhh
Q 043655 335 LSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNK---HNVQGLACLFRS 392 (512)
Q Consensus 335 l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~---~~~~~l~~~L~~ 392 (512)
+..+++|+.|+++.+.+..+.. .....+++|++|+|..+.-. .+...+..+++.
T Consensus 151 ~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~ 207 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQSVPH----GAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRE 207 (251)
T ss_dssp TTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHH
T ss_pred cCcCcCCCEEECCCCcCCccCH----HHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHh
Confidence 4566777888887765443221 13446778888888764322 345556555553
No 100
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.11 E-value=1.6e-06 Score=88.17 Aligned_cols=134 Identities=17% Similarity=0.110 Sum_probs=67.4
Q ss_pred cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF 217 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 217 (512)
..++.|++.... ...+|.. .++|++|+|++|... .+|. ...+++|++|+++++.+.+-. ...
T Consensus 153 ~~L~~L~l~~N~--l~~lp~~---~~~L~~L~L~~n~l~-~l~~----~~~l~~L~~L~l~~N~l~~l~--------~~~ 214 (454)
T 1jl5_A 153 SFLKIIDVDNNS--LKKLPDL---PPSLEFIAAGNNQLE-ELPE----LQNLPFLTAIYADNNSLKKLP--------DLP 214 (454)
T ss_dssp TTCCEEECCSSC--CSCCCCC---CTTCCEEECCSSCCS-SCCC----CTTCTTCCEEECCSSCCSSCC--------CCC
T ss_pred CCCCEEECCCCc--CcccCCC---cccccEEECcCCcCC-cCcc----ccCCCCCCEEECCCCcCCcCC--------CCc
Confidence 345555554322 2234432 247788888774221 1221 346777777777776665421 123
Q ss_pred cccceecccccc--ccchhcccccccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeecc
Q 043655 218 PHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYN 295 (512)
Q Consensus 218 p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~ 295 (512)
++|+.|++.++. .+.. +..+++|+.|++.++.- ..+.-..++|+.|.+.++.... +....++|+.|+++++
T Consensus 215 ~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l-~~l~~~~~~L~~L~l~~N~l~~-----l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 215 LSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLL-KTLPDLPPSLEALNVRDNYLTD-----LPELPQSLTFLDVSEN 287 (454)
T ss_dssp TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCC-SSCCSCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSS
T ss_pred CcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcC-CcccccccccCEEECCCCcccc-----cCcccCcCCEEECcCC
Confidence 567777776664 2322 34566677777766642 2221122566666666553221 0011245555555554
Q ss_pred c
Q 043655 296 A 296 (512)
Q Consensus 296 ~ 296 (512)
.
T Consensus 288 ~ 288 (454)
T 1jl5_A 288 I 288 (454)
T ss_dssp C
T ss_pred c
Confidence 4
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.10 E-value=6.2e-06 Score=76.64 Aligned_cols=96 Identities=18% Similarity=0.169 Sum_probs=58.5
Q ss_pred EeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecc
Q 043655 146 EVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDL 225 (512)
Q Consensus 146 ~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L 225 (512)
++.......+|..+. ++|+.|+|+++... .+++. ....+++|++|+|+++.+.+... ..+ ..+++|+.|+|
T Consensus 20 ~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~-~~~~~--~~~~l~~L~~L~L~~n~l~~~~~--~~~--~~l~~L~~L~L 90 (251)
T 3m19_A 20 DCQGKSLDSVPSGIP--ADTEKLDLQSTGLA-TLSDA--TFRGLTKLTWLNLDYNQLQTLSA--GVF--DDLTELGTLGL 90 (251)
T ss_dssp ECTTCCCSSCCSCCC--TTCCEEECTTSCCC-CCCTT--TTTTCTTCCEEECTTSCCCCCCT--TTT--TTCTTCCEEEC
T ss_pred ecCCCCccccCCCCC--CCCCEEEccCCCcC-ccCHh--HhcCcccCCEEECCCCcCCccCH--hHh--ccCCcCCEEEC
Confidence 333444455665543 57888888874221 22221 13468888888888887765211 111 36788888888
Q ss_pred cccc--cc-chhcccccccceeeecccc
Q 043655 226 DACY--GL-KQLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 226 ~~~~--~l-~~l~~~cp~Le~L~l~~c~ 250 (512)
.++. .+ ...+..+++|+.|+|.++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 118 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQ 118 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCc
Confidence 8775 22 2344567888888888774
No 102
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.06 E-value=1.4e-06 Score=85.56 Aligned_cols=155 Identities=14% Similarity=0.025 Sum_probs=78.9
Q ss_pred ccchhcccccccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEE-eCCCcceEEeecc--c-cCC------
Q 043655 230 GLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKI-DASKLKVLNWEYN--A-ITA------ 299 (512)
Q Consensus 230 ~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i-~~p~L~~L~~~~~--~-~~~------ 299 (512)
.+..++..+|.|++|.|.+|.++....+..++|++|.|..|.........+.. ..|+|+.|+++.. . ...
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred CHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 34566667788888888776443322234578888888766432111111111 4688888887421 1 011
Q ss_pred --CccccCcccceeeEEeeEEcccchhHHHHhHHHHHh--hcCCcccEeeecchhhhhhcccccccccccccccceEEEE
Q 043655 300 --SSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFL--SGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELH 375 (512)
Q Consensus 300 --~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l--~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 375 (512)
......+|+|+.+++..+...+.. ...+. ..+++|++|+|+.+.+...........++.+++|++|+|.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~-------~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVV-------VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHH-------HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHH-------HHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECC
Confidence 111234678888877654322110 01111 2467788888876543222111111233466778888776
Q ss_pred eeccCCcHHHHHHHHhhC
Q 043655 376 TGFNKHNVQGLACLFRSS 393 (512)
Q Consensus 376 ~~~~~~~~~~l~~~L~~c 393 (512)
.+. .+..++..+-+.+
T Consensus 316 ~n~--i~d~~~~~l~~al 331 (362)
T 2ra8_A 316 YNY--LSDEMKKELQKSL 331 (362)
T ss_dssp SBB--CCHHHHHHHHHHC
T ss_pred CCc--CCHHHHHHHHHHc
Confidence 542 2334444444433
No 103
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.05 E-value=9.9e-07 Score=76.32 Aligned_cols=82 Identities=11% Similarity=0.143 Sum_probs=65.2
Q ss_pred cccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc-----ccchhcc---cccccceeeeccccCccceeEe---
Q 043655 190 RSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY-----GLKQLKV---GCRALEDLTLDNCIQLCGLDIF--- 258 (512)
Q Consensus 190 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~-----~l~~l~~---~cp~Le~L~l~~c~~l~~~~v~--- 258 (512)
.+|+.|+|++|.+. +.++..+ .+|++|++|+|.+|. ++..+.. .|++|++|+|.+|..+++..+.
T Consensus 61 ~~L~~LDLs~~~It-d~GL~~L---~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIM-SIGFDHM---EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEESCCCC-GGGGGGG---TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred ceEeEEeCcCCCcc-HHHHHHh---cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 47999999999954 4567665 489999999999997 4566654 3789999999999987765443
Q ss_pred -ccCcceEEEeeeccccC
Q 043655 259 -GTKLERLRVASCFDAYC 275 (512)
Q Consensus 259 -~~~L~~L~l~~c~~~~~ 275 (512)
.++|++|.+.+|....+
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 38999999999975543
No 104
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.03 E-value=4e-06 Score=77.25 Aligned_cols=77 Identities=19% Similarity=0.176 Sum_probs=46.7
Q ss_pred cccceEEeeeEEeeCccchhhhhcCCCCcccceecccccccc---ch-hcccccccceeeeccccCccceeE----eccC
Q 043655 190 RSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYGL---KQ-LKVGCRALEDLTLDNCIQLCGLDI----FGTK 261 (512)
Q Consensus 190 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~l---~~-l~~~cp~Le~L~l~~c~~l~~~~v----~~~~ 261 (512)
++|++|+|+++.+..-.. ..+ ..+++|++|+|.++..+ .. .+..+++|+.|++.+|..+..+.. ..++
T Consensus 31 ~~l~~L~l~~n~l~~i~~--~~~--~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~ 106 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPS--HAF--SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL 106 (239)
T ss_dssp TTCCEEEEESCCCSEECT--TTT--TTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred CcccEEEEeCCcceEECH--HHc--cCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence 489999999887765211 011 36888888888877522 22 345678888888887554443321 1145
Q ss_pred cceEEEeee
Q 043655 262 LERLRVASC 270 (512)
Q Consensus 262 L~~L~l~~c 270 (512)
|+.|.+.++
T Consensus 107 L~~L~l~~n 115 (239)
T 2xwt_C 107 LKFLGIFNT 115 (239)
T ss_dssp CCEEEEEEE
T ss_pred CCEEeCCCC
Confidence 555555544
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.02 E-value=9.7e-06 Score=75.92 Aligned_cols=97 Identities=21% Similarity=0.192 Sum_probs=61.6
Q ss_pred cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF 217 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 217 (512)
..++.|++.... ...+| .+..+++|++|+|++|... .+++ ...+++|+.|+|+++.+.+-..+ ..
T Consensus 41 ~~L~~L~l~~n~--i~~l~-~l~~l~~L~~L~L~~N~i~-~~~~----l~~l~~L~~L~L~~N~l~~l~~~------~~- 105 (263)
T 1xeu_A 41 SGVQNFNGDNSN--IQSLA-GMQFFTNLKELHLSHNQIS-DLSP----LKDLTKLEELSVNRNRLKNLNGI------PS- 105 (263)
T ss_dssp TTCSEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCC-CCGG----GTTCSSCCEEECCSSCCSCCTTC------CC-
T ss_pred CcCcEEECcCCC--cccch-HHhhCCCCCEEECCCCccC-CChh----hccCCCCCEEECCCCccCCcCcc------cc-
Confidence 567777665332 23445 4556888999999885211 2222 34688899999988877653222 12
Q ss_pred cccceecccccc--ccchhcccccccceeeecccc
Q 043655 218 PHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 218 p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~ 250 (512)
++|+.|+|.++. ++.. +..+++|+.|++.++.
T Consensus 106 ~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~Ls~N~ 139 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNK 139 (263)
T ss_dssp SSCCEEECCSSCCSBSGG-GTTCTTCCEEECTTSC
T ss_pred CcccEEEccCCccCCChh-hcCcccccEEECCCCc
Confidence 788888887775 3332 4567777777777765
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.99 E-value=7.5e-06 Score=85.26 Aligned_cols=180 Identities=19% Similarity=0.134 Sum_probs=104.6
Q ss_pred cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF 217 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 217 (512)
.+++.|++.... ...+|..++ ++|++|+|++|... .+| ..+++|++|+|+++.+.+-. . + .
T Consensus 59 ~~L~~L~Ls~n~--L~~lp~~l~--~~L~~L~Ls~N~l~-~ip------~~l~~L~~L~Ls~N~l~~ip---~-l----~ 119 (571)
T 3cvr_A 59 NQFSELQLNRLN--LSSLPDNLP--PQITVLEITQNALI-SLP------ELPASLEYLDACDNRLSTLP---E-L----P 119 (571)
T ss_dssp TTCSEEECCSSC--CSCCCSCCC--TTCSEEECCSSCCS-CCC------CCCTTCCEEECCSSCCSCCC---C-C----C
T ss_pred CCccEEEeCCCC--CCccCHhHc--CCCCEEECcCCCCc-ccc------cccCCCCEEEccCCCCCCcc---h-h----h
Confidence 467777776432 234676553 78999999985332 333 24789999999988776522 2 1 1
Q ss_pred cccceecccccc--ccchhcccccccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeecc
Q 043655 218 PHLKKLDLDACY--GLKQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYN 295 (512)
Q Consensus 218 p~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~ 295 (512)
.+|+.|+|.++. ++.. .+++|+.|+|.++.. ..+.-..++|+.|.+.++...... . +. ++|+.|+++++
T Consensus 120 ~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~~l~~L~~L~Ls~N~L~~lp--~--l~-~~L~~L~Ls~N 190 (571)
T 3cvr_A 120 ASLKHLDVDNNQLTMLPE---LPALLEYINADNNQL-TMLPELPTSLEVLSVRNNQLTFLP--E--LP-ESLEALDVSTN 190 (571)
T ss_dssp TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSCCC--C--CC-TTCCEEECCSS
T ss_pred cCCCEEECCCCcCCCCCC---cCccccEEeCCCCcc-CcCCCcCCCcCEEECCCCCCCCcc--h--hh-CCCCEEECcCC
Confidence 288888888875 3333 678888888888753 223223467788887776433211 1 22 77777777776
Q ss_pred ccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEE
Q 043655 296 AITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELH 375 (512)
Q Consensus 296 ~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 375 (512)
.+.....+.. +| ....+.++.|+++.+.+..+.. ....+++|+.|+|.
T Consensus 191 ~L~~lp~~~~--~L-------------------------~~~~~~L~~L~Ls~N~l~~lp~-----~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 191 LLESLPAVPV--RN-------------------------HHSEETEIFFRCRENRITHIPE-----NILSLDPTCTIILE 238 (571)
T ss_dssp CCSSCCCCC-----------------------------------CCEEEECCSSCCCCCCG-----GGGGSCTTEEEECC
T ss_pred CCCchhhHHH--hh-------------------------hcccccceEEecCCCcceecCH-----HHhcCCCCCEEEee
Confidence 5432111100 11 1222335777777766543321 23347788888876
Q ss_pred ee
Q 043655 376 TG 377 (512)
Q Consensus 376 ~~ 377 (512)
.+
T Consensus 239 ~N 240 (571)
T 3cvr_A 239 DN 240 (571)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 107
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.99 E-value=2.8e-06 Score=79.57 Aligned_cols=36 Identities=25% Similarity=0.602 Sum_probs=34.1
Q ss_pred CccCCCChHHHHHHHccCCchhhH-HHhhhcHhHHHh
Q 043655 24 DRISDLPDAILHHILFLLPIKSIA-QTCTLSKRWRSL 59 (512)
Q Consensus 24 D~is~LPdevl~~Ils~L~~~d~~-rts~lSrrWr~l 59 (512)
..+..||||++..||++||.++++ |++.|||+|+.+
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 468999999999999999999999 999999999985
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.95 E-value=2.1e-05 Score=81.82 Aligned_cols=175 Identities=18% Similarity=0.093 Sum_probs=94.0
Q ss_pred cCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhccccc
Q 043655 162 SDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGCR 239 (512)
Q Consensus 162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp 239 (512)
+.+|+.|+|+++... .+|.. -+++|++|+|+++.+..-. ..+++|+.|+|.++. ++.. + +.
T Consensus 58 ~~~L~~L~Ls~n~L~-~lp~~-----l~~~L~~L~Ls~N~l~~ip--------~~l~~L~~L~Ls~N~l~~ip~-l--~~ 120 (571)
T 3cvr_A 58 INQFSELQLNRLNLS-SLPDN-----LPPQITVLEITQNALISLP--------ELPASLEYLDACDNRLSTLPE-L--PA 120 (571)
T ss_dssp HTTCSEEECCSSCCS-CCCSC-----CCTTCSEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCCCC-C--CT
T ss_pred cCCccEEEeCCCCCC-ccCHh-----HcCCCCEEECcCCCCcccc--------cccCCCCEEEccCCCCCCcch-h--hc
Confidence 358999999985322 24432 2578999999988776321 246788888887764 3332 1 12
Q ss_pred ccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCCccccCcccceeeEEeeEEc
Q 043655 240 ALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEASVGFILL 319 (512)
Q Consensus 240 ~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~ 319 (512)
+|+.|+|.++.. ..+.-..++|+.|.+ +++.+..... .+++|+.++++.+..
T Consensus 121 ~L~~L~Ls~N~l-~~lp~~l~~L~~L~L-------------------------s~N~l~~lp~--~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 121 SLKHLDVDNNQL-TMLPELPALLEYINA-------------------------DNNQLTMLPE--LPTSLEVLSVRNNQL 172 (571)
T ss_dssp TCCEEECCSSCC-SCCCCCCTTCCEEEC-------------------------CSSCCSCCCC--CCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcC-CCCCCcCccccEEeC-------------------------CCCccCcCCC--cCCCcCEEECCCCCC
Confidence 677777776642 111112244444444 4443322111 334555555443322
Q ss_pred ccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccccccccccc-------ceEEEEeeccCCcHHHHHHHHhh
Q 043655 320 HEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNL-------KSLELHTGFNKHNVQGLACLFRS 392 (512)
Q Consensus 320 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L-------~~L~L~~~~~~~~~~~l~~~L~~ 392 (512)
..- .. +. ++|+.|+++.+.+..+.. .+ .+| +.|+|..+.-. .++.-+..
T Consensus 173 ~~l---------p~-l~--~~L~~L~Ls~N~L~~lp~------~~--~~L~~~~~~L~~L~Ls~N~l~----~lp~~l~~ 228 (571)
T 3cvr_A 173 TFL---------PE-LP--ESLEALDVSTNLLESLPA------VP--VRNHHSEETEIFFRCRENRIT----HIPENILS 228 (571)
T ss_dssp SCC---------CC-CC--TTCCEEECCSSCCSSCCC------CC----------CCEEEECCSSCCC----CCCGGGGG
T ss_pred CCc---------ch-hh--CCCCEEECcCCCCCchhh------HH--HhhhcccccceEEecCCCcce----ecCHHHhc
Confidence 110 00 11 568888888776543322 11 155 88888754211 23333445
Q ss_pred CCCCcEEEEEeec
Q 043655 393 SPSIHTLILKIIN 405 (512)
Q Consensus 393 cp~Le~L~l~~~~ 405 (512)
+++|+.|+|....
T Consensus 229 l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 229 LDPTCTIILEDNP 241 (571)
T ss_dssp SCTTEEEECCSSS
T ss_pred CCCCCEEEeeCCc
Confidence 9999999997543
No 109
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.93 E-value=2.1e-05 Score=83.19 Aligned_cols=95 Identities=20% Similarity=0.172 Sum_probs=63.0
Q ss_pred EEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeC--ccchhhhhcCCCCcccce
Q 043655 145 IEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFN--QPCLLDLFTDSSFPHLKK 222 (512)
Q Consensus 145 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--~~~l~~l~~~~~~p~L~~ 222 (512)
+++...+...+|..+ .+++++|+|++|.. -.+++.. ..++++|++|+|+++.+.. ++.+ .++++|++
T Consensus 36 ~~c~~~~l~~vP~~l--p~~~~~LdLs~N~i-~~l~~~~--f~~l~~L~~L~Ls~N~i~~i~~~~f------~~L~~L~~ 104 (635)
T 4g8a_A 36 YQCMELNFYKIPDNL--PFSTKNLDLSFNPL-RHLGSYS--FFSFPELQVLDLSRCEIQTIEDGAY------QSLSHLST 104 (635)
T ss_dssp EECTTSCCSSCCSSS--CTTCCEEECTTSCC-CEECTTT--TTTCTTCCEEECTTCCCCEECTTTT------TTCTTCCE
T ss_pred EECCCCCcCccCCCC--CcCCCEEEeeCCCC-CCCCHHH--HhCCCCCCEEECCCCcCCCcChhHh------cCCCCCCE
Confidence 343334455666544 35789999998532 2344332 3578999999999887754 2222 36889999
Q ss_pred ecccccc--ccc-hhcccccccceeeecccc
Q 043655 223 LDLDACY--GLK-QLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 223 L~L~~~~--~l~-~l~~~cp~Le~L~l~~c~ 250 (512)
|+|.++. .+. ..+.++++|+.|++.+|.
T Consensus 105 L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~ 135 (635)
T 4g8a_A 105 LILTGNPIQSLALGAFSGLSSLQKLVAVETN 135 (635)
T ss_dssp EECTTCCCCEECGGGGTTCTTCCEEECTTSC
T ss_pred EEccCCcCCCCCHHHhcCCCCCCEEECCCCc
Confidence 9998875 332 356678889999888875
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.88 E-value=1e-05 Score=69.93 Aligned_cols=104 Identities=20% Similarity=0.166 Sum_probs=53.5
Q ss_pred cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF 217 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 217 (512)
..++.|++....-....+|..+..+++|++|+|++|. +.-. .....+++|++|+|+++.+.+. +...+ ..+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~--l~~~---~~~~~l~~L~~L~Ls~N~l~~~--~~~~~--~~l 94 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG--LISV---SNLPKLPKLKKLELSENRIFGG--LDMLA--EKL 94 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC--CCCC---SSCCCCSSCCEEEEESCCCCSC--CCHHH--HHC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC--CCCh---hhhccCCCCCEEECcCCcCchH--HHHHH--hhC
Confidence 3455555543321112455555566777777777642 2111 1123567777777777766542 11112 136
Q ss_pred cccceecccccc--ccc--hhcccccccceeeecccc
Q 043655 218 PHLKKLDLDACY--GLK--QLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 218 p~L~~L~L~~~~--~l~--~l~~~cp~Le~L~l~~c~ 250 (512)
|+|+.|+|.++. ++. ..+..+++|+.|++.+|.
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence 666666666654 222 233455666666666654
No 111
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.88 E-value=3e-06 Score=78.32 Aligned_cols=38 Identities=26% Similarity=0.504 Sum_probs=35.0
Q ss_pred cCCCChHHHHHHHccCCchhhHHHhhhcHhHHH------hhccC
Q 043655 26 ISDLPDAILHHILFLLPIKSIAQTCTLSKRWRS------LWCSF 63 (512)
Q Consensus 26 is~LPdevl~~Ils~L~~~d~~rts~lSrrWr~------lw~~~ 63 (512)
|++||+||+.+|||||+++|+++++.|||+||. +|+.+
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~ 48 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYF 48 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHH
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 788999999999999999999999999999996 57654
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.87 E-value=8.2e-06 Score=70.64 Aligned_cols=109 Identities=17% Similarity=0.127 Sum_probs=67.0
Q ss_pred CCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccc
Q 043655 285 SKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLH 364 (512)
Q Consensus 285 p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~ 364 (512)
++|+.|.+.++.+.....+..+++|+.++++.+...+. +..++..+++|+.|+++.+.+..+... ....
T Consensus 49 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~l~ 117 (168)
T 2ell_A 49 VNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG--------LDMLAEKLPNLTHLNLSGNKLKDISTL---EPLK 117 (168)
T ss_dssp GGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC--------CCHHHHHCTTCCEEECBSSSCCSSGGG---GGGS
T ss_pred CCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH--------HHHHHhhCCCCCEEeccCCccCcchhH---HHHh
Confidence 44555555554443334455677777777766544321 123456688999999988765443221 2445
Q ss_pred cccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEee
Q 043655 365 TFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKII 404 (512)
Q Consensus 365 ~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~ 404 (512)
.+++|++|+|..+.-..........+..+|+|+.|++...
T Consensus 118 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 118 KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 7889999999765322211223357899999999988754
No 113
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.84 E-value=4.5e-06 Score=70.68 Aligned_cols=107 Identities=20% Similarity=0.141 Sum_probs=68.4
Q ss_pred CCCcceEEeeccccCCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccccc
Q 043655 284 ASKLKVLNWEYNAITASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNL 363 (512)
Q Consensus 284 ~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~ 363 (512)
.++|++|.++++.+.....+.++++|+.++++.+...+. +...+..+++++.|+++.+.+..+... ...
T Consensus 41 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~--------~~~~~~~l~~L~~L~ls~N~i~~~~~~---~~~ 109 (149)
T 2je0_A 41 FEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG--------LEVLAEKCPNLTHLNLSGNKIKDLSTI---EPL 109 (149)
T ss_dssp CTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC--------THHHHHHCTTCCEEECTTSCCCSHHHH---GGG
T ss_pred cCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch--------HHHHhhhCCCCCEEECCCCcCCChHHH---HHH
Confidence 356666666666554445566778888888876544321 234566789999999988765443211 244
Q ss_pred ccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEE
Q 043655 364 HTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLIL 401 (512)
Q Consensus 364 ~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l 401 (512)
..+++|++|++..+.-..........+..+|+|+.|++
T Consensus 110 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 110 KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 57889999999764222111122357899999999865
No 114
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.80 E-value=9.4e-06 Score=85.96 Aligned_cols=150 Identities=15% Similarity=0.207 Sum_probs=83.7
Q ss_pred CCCcceEEeeccccCC--CccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccc
Q 043655 284 ASKLKVLNWEYNAITA--SSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFT 361 (512)
Q Consensus 284 ~p~L~~L~~~~~~~~~--~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~ 361 (512)
.++++.+.++++.... ...+..++.|+.+++..+...... ....+..+++|+.|+++.+.+..+.. .
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~-------~~~~~~~l~~L~~L~Ls~N~L~~l~~----~ 512 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF-------LPDIFTELRNLTFLDLSQCQLEQLSP----T 512 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE-------ECSCCTTCTTCCEEECTTSCCCEECT----T
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhccccccc-------CchhhhhccccCEEECCCCccCCcCh----H
Confidence 4556666655543321 133456677777777644321110 11246677888888888776544321 2
Q ss_pred ccccccccceEEEEeeccCCcHHHH-HHHHhhCCCCcEEEEEeecccchhhhcccccccCccCccchhhhhccccCchhh
Q 043655 362 NLHTFTNLKSLELHTGFNKHNVQGL-ACLFRSSPSIHTLILKIINDYKIQRRQWNRDLWDMYTSEEEQYWQSQSQTLKPF 440 (512)
Q Consensus 362 ~~~~~~~L~~L~L~~~~~~~~~~~l-~~~L~~cp~Le~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 440 (512)
.+..+++|+.|+|+.+.-. ++ ...+..+++|+.|++....=... .+. ....+
T Consensus 513 ~f~~l~~L~~L~Ls~N~l~----~l~~~~~~~l~~L~~L~Ls~N~l~~~---------------~~~--------~l~~l 565 (635)
T 4g8a_A 513 AFNSLSSLQVLNMSHNNFF----SLDTFPYKCLNSLQVLDYSLNHIMTS---------------KKQ--------ELQHF 565 (635)
T ss_dssp TTTTCTTCCEEECTTSCCC----BCCCGGGTTCTTCCEEECTTSCCCBC---------------CSS--------CTTCC
T ss_pred HHcCCCCCCEEECCCCcCC----CCChhHHhCCCCCCEEECCCCcCCCC---------------CHH--------HHHhh
Confidence 4456788888888653211 11 22357788999988864211100 000 11222
Q ss_pred hcCccEEEEee--eccchhHHHHHHHHHhcCcc
Q 043655 441 LNNLNVVEIHG--FLECENEVSLAKFLLKHGKA 471 (512)
Q Consensus 441 ~~~L~~v~i~~--~~g~~~e~~l~~~ll~~a~~ 471 (512)
..+|+++.+.+ |.++..-..|+.++-.+...
T Consensus 566 ~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~ 598 (635)
T 4g8a_A 566 PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL 598 (635)
T ss_dssp CTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTT
T ss_pred hCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCc
Confidence 46899999976 55666666777777555443
No 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.78 E-value=1.1e-05 Score=68.33 Aligned_cols=79 Identities=27% Similarity=0.300 Sum_probs=37.4
Q ss_pred CCccEEEEecccCc-cccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--c-cchhcccc
Q 043655 163 DSLRVFKLRSRYRG-FRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--G-LKQLKVGC 238 (512)
Q Consensus 163 ~~L~~L~L~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~-l~~l~~~c 238 (512)
++|+.|++++|... ..++. ....+++|+.|+|+++.+.+...+ ..+++|+.|+|.++. + +......+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~------~~l~~L~~L~Ls~n~i~~~~~~~~~~l 87 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG---LTDEFEELEFLSTINVGLTSIANL------PKLNKLKKLELSDNRVSGGLEVLAEKC 87 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS---CCTTCTTCCEEECTTSCCCCCTTC------CCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred ccCeEEEccCCcCChhHHHH---HHhhcCCCcEEECcCCCCCCchhh------hcCCCCCEEECCCCcccchHHHHhhhC
Confidence 45566666653211 11221 123456666666665555432111 245555555555554 2 33334445
Q ss_pred cccceeeecccc
Q 043655 239 RALEDLTLDNCI 250 (512)
Q Consensus 239 p~Le~L~l~~c~ 250 (512)
++|+.|++.+|.
T Consensus 88 ~~L~~L~ls~N~ 99 (149)
T 2je0_A 88 PNLTHLNLSGNK 99 (149)
T ss_dssp TTCCEEECTTSC
T ss_pred CCCCEEECCCCc
Confidence 566666665553
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.72 E-value=2.8e-05 Score=69.85 Aligned_cols=92 Identities=21% Similarity=0.238 Sum_probs=52.5
Q ss_pred CCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc
Q 043655 150 DDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY 229 (512)
Q Consensus 150 ~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~ 229 (512)
.+...+|..+ .++|++|+|+++... .+++. ....+++|++|+|+++.+.+-.. ..+ ..+++|++|+|.++.
T Consensus 17 ~~l~~~p~~~--~~~l~~L~l~~n~l~-~~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~--~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 17 QGRTSVPTGI--PAQTTYLDLETNSLK-SLPNG--VFDELTSLTQLYLGGNKLQSLPN--GVF--NKLTSLTYLNLSTNQ 87 (208)
T ss_dssp SCCSSCCSCC--CTTCSEEECCSSCCC-CCCTT--TTTTCTTCSEEECCSSCCCCCCT--TTT--TTCTTCCEEECCSSC
T ss_pred CCccCCCCCC--CCCCcEEEcCCCccC-cCChh--hhcccccCcEEECCCCccCccCh--hhc--CCCCCcCEEECCCCc
Confidence 3344555544 357888888874221 22221 13467888888888777654211 111 356777777777664
Q ss_pred --ccc-hhcccccccceeeecccc
Q 043655 230 --GLK-QLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 230 --~l~-~l~~~cp~Le~L~l~~c~ 250 (512)
.+. ..+..+++|+.|++.++.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~ 111 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQ 111 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHhHhcCccCCCEEEcCCCc
Confidence 221 223456777777776664
No 117
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.67 E-value=1.1e-05 Score=79.10 Aligned_cols=63 Identities=13% Similarity=0.094 Sum_probs=35.1
Q ss_pred CCCcceEEeeccccCCC-----ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchh
Q 043655 284 ASKLKVLNWEYNAITAS-----SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPC 350 (512)
Q Consensus 284 ~p~L~~L~~~~~~~~~~-----~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~ 350 (512)
.|+|++|.+.++.+... .....+|+|+.++++.+... +.+ ...+...++.+++|+.|+++.+.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~-d~G---~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT-DEG---ARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB-HHH---HHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC-hHH---HHHHHhhcccCCcceEEECCCCc
Confidence 46666666655433211 11135778888888654322 211 12233334667889999998664
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.67 E-value=5.7e-05 Score=68.53 Aligned_cols=145 Identities=14% Similarity=0.139 Sum_probs=80.0
Q ss_pred EEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceec
Q 043655 145 IEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLD 224 (512)
Q Consensus 145 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~ 224 (512)
+++.......+|..+ .+.++.|.|+++... .+++.. ....+++|++|+|+++.+.+-.. ..+ ..+++|++|+
T Consensus 16 l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~-~~~~~~-~~~~l~~L~~L~L~~N~i~~i~~--~~~--~~l~~L~~L~ 87 (220)
T 2v70_A 16 VDCSNQKLNKIPEHI--PQYTAELRLNNNEFT-VLEATG-IFKKLPQLRKINFSNNKITDIEE--GAF--EGASGVNEIL 87 (220)
T ss_dssp EECCSSCCSSCCSCC--CTTCSEEECCSSCCC-EECCCC-CGGGCTTCCEEECCSSCCCEECT--TTT--TTCTTCCEEE
T ss_pred eEeCCCCcccCccCC--CCCCCEEEcCCCcCC-ccCchh-hhccCCCCCEEECCCCcCCEECH--HHh--CCCCCCCEEE
Confidence 333333444566544 345678888875221 222211 23468888888888877654211 011 3678888888
Q ss_pred ccccc--cc-chhcccccccceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC-
Q 043655 225 LDACY--GL-KQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS- 300 (512)
Q Consensus 225 L~~~~--~l-~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~- 300 (512)
|.++. ++ ...+..+++|++|+|.++... .+... . ....++|++|.++++.+...
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~--------------------~-~~~l~~L~~L~L~~N~l~~~~ 145 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGND--------------------S-FIGLSSVRLLSLYDNQITTVA 145 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSCCC-CBCTT--------------------S-STTCTTCSEEECTTSCCCCBC
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCcCC-eECHh--------------------H-cCCCccCCEEECCCCcCCEEC
Confidence 87765 22 233556778888888776521 11000 0 00235666666666554332
Q ss_pred -ccccCcccceeeEEeeEEc
Q 043655 301 -SSLENLASLHEASVGFILL 319 (512)
Q Consensus 301 -~~l~~~~~L~~l~l~~~~~ 319 (512)
..+..+++|+.++++....
T Consensus 146 ~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 146 PGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp TTTTTTCTTCCEEECCSCCE
T ss_pred HHHhcCCCCCCEEEecCcCC
Confidence 3456777888877765443
No 119
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.62 E-value=8.8e-05 Score=67.27 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=47.3
Q ss_pred cCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCc--cchhhhhcCCCCcccceeccc
Q 043655 149 TDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQ--PCLLDLFTDSSFPHLKKLDLD 226 (512)
Q Consensus 149 ~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~l~~l~~~~~~p~L~~L~L~ 226 (512)
......+|..+. ++|+.|+|+++... .+++. ....+++|+.|+|+++.+..- ..+ ..+++|+.|+|.
T Consensus 20 ~~~l~~iP~~l~--~~l~~L~l~~n~i~-~i~~~--~~~~l~~L~~L~Ls~N~i~~~~~~~~------~~l~~L~~L~Ls 88 (220)
T 2v9t_B 20 GKGLTEIPTNLP--ETITEIRLEQNTIK-VIPPG--AFSPYKKLRRIDLSNNQISELAPDAF------QGLRSLNSLVLY 88 (220)
T ss_dssp TSCCSSCCSSCC--TTCCEEECCSSCCC-EECTT--SSTTCTTCCEEECCSSCCCEECTTTT------TTCSSCCEEECC
T ss_pred CCCcCcCCCccC--cCCCEEECCCCcCC-CcCHh--HhhCCCCCCEEECCCCcCCCcCHHHh------hCCcCCCEEECC
Confidence 334445565443 57778887774221 23322 124577777777777666532 112 245666666666
Q ss_pred ccc--ccc-hhcccccccceeeecccc
Q 043655 227 ACY--GLK-QLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 227 ~~~--~l~-~l~~~cp~Le~L~l~~c~ 250 (512)
++. .+. .++.++++|+.|+|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~ 115 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANK 115 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCC
Confidence 554 111 223445555555555543
No 120
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.61 E-value=5.3e-06 Score=81.87 Aligned_cols=74 Identities=19% Similarity=0.110 Sum_probs=43.9
Q ss_pred HHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccC-CcHHHHHHHHhhCCCCcEEEEEe
Q 043655 330 SVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNK-HNVQGLACLFRSSPSIHTLILKI 403 (512)
Q Consensus 330 ~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~l~~~L~~cp~Le~L~l~~ 403 (512)
.+...+..+++|+.|+++.+.+...........+...++|++|+|+.+.-. .....+...++.+|+|++|++..
T Consensus 174 ~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~ 248 (372)
T 3un9_A 174 VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF 248 (372)
T ss_dssp HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccC
Confidence 345556677778888887765433221111123334567888888764222 22345666777888888888764
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.56 E-value=9.6e-05 Score=67.48 Aligned_cols=94 Identities=20% Similarity=0.213 Sum_probs=57.2
Q ss_pred ccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccc
Q 043655 148 ATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDA 227 (512)
Q Consensus 148 ~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~ 227 (512)
.......+|..+ .++|++|+|++|... .+++. ....+++|++|+|+++.+..-.. ..+ ..+++|+.|+|.+
T Consensus 27 ~~~~l~~ip~~~--~~~L~~L~Ls~n~i~-~~~~~--~~~~l~~L~~L~L~~N~l~~i~~--~~~--~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 27 RSKRHASVPAGI--PTNAQILYLHDNQIT-KLEPG--VFDSLINLKELYLGSNQLGALPV--GVF--DSLTQLTVLDLGT 97 (229)
T ss_dssp TTSCCSSCCSCC--CTTCSEEECCSSCCC-CCCTT--TTTTCTTCCEEECCSSCCCCCCT--TTT--TTCTTCCEEECCS
T ss_pred cCCCcCccCCCC--CCCCCEEEcCCCccC-ccCHH--HhhCccCCcEEECCCCCCCCcCh--hhc--ccCCCcCEEECCC
Confidence 333445566544 378889998885221 22222 13468889999998887754211 111 3678888888887
Q ss_pred cc--cc-chhcccccccceeeecccc
Q 043655 228 CY--GL-KQLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 228 ~~--~l-~~l~~~cp~Le~L~l~~c~ 250 (512)
+. .+ ...+..+++|+.|+|.++.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~ 123 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNK 123 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCccChhHhCcchhhCeEeccCCc
Confidence 74 22 2234567788888887765
No 122
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.49 E-value=2.7e-05 Score=78.96 Aligned_cols=38 Identities=26% Similarity=0.423 Sum_probs=35.6
Q ss_pred CCCccCCCChHHHHHHHccCCchhhHHHhhhcHhHHHh
Q 043655 22 GIDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRSL 59 (512)
Q Consensus 22 ~~D~is~LPdevl~~Ils~L~~~d~~rts~lSrrWr~l 59 (512)
..|.|+.||+|++.+||+||+.+|+++++.|||+|+++
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKI 48 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHH
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999999999999999964
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.46 E-value=0.00017 Score=70.71 Aligned_cols=141 Identities=23% Similarity=0.214 Sum_probs=76.4
Q ss_pred cCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccc
Q 043655 149 TDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDAC 228 (512)
Q Consensus 149 ~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~ 228 (512)
......+|..+. +.++.|+|++|.. -.+++. .....+++|++|+|+++.+..-.. ..+ ..+++|+.|+|.++
T Consensus 27 ~~~l~~iP~~~~--~~l~~L~Ls~N~l-~~l~~~-~~~~~l~~L~~L~L~~N~i~~i~~--~~~--~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 27 KQQLPNVPQSLP--SYTALLDLSHNNL-SRLRAE-WTPTRLTNLHSLLLSHNHLNFISS--EAF--VPVPNLRYLDLSSN 98 (361)
T ss_dssp SSCCSSCCSSCC--TTCSEEECCSSCC-CEECTT-SSSSCCTTCCEEECCSSCCCEECT--TTT--TTCTTCCEEECCSS
T ss_pred CCCcCccCccCC--CCCCEEECCCCCC-CccChh-hhhhcccccCEEECCCCcCCccCh--hhc--cCCCCCCEEECCCC
Confidence 333445665443 4578888887522 122222 112267888888888877764211 111 36788888888877
Q ss_pred c--cc-chhcccccccceeeeccccCcccee---Ee-ccCcceEEEeeeccccCCCceEE--EeCCCcceEEeeccccC
Q 043655 229 Y--GL-KQLKVGCRALEDLTLDNCIQLCGLD---IF-GTKLERLRVASCFDAYCDKSWVK--IDASKLKVLNWEYNAIT 298 (512)
Q Consensus 229 ~--~l-~~l~~~cp~Le~L~l~~c~~l~~~~---v~-~~~L~~L~l~~c~~~~~~~~~~~--i~~p~L~~L~~~~~~~~ 298 (512)
. .+ ...+..+++|+.|+|.++.. ..+. +. .++|+.|.+.++.........+. ...++|+.|+++++.+.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcc-cEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 5 22 22456678888888888752 2221 11 15667776666533211111110 23566666666665543
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.43 E-value=9.5e-05 Score=71.56 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=16.0
Q ss_pred Ccccceecccc-ccccc-hhcccccccceeeeccc
Q 043655 217 FPHLKKLDLDA-CYGLK-QLKVGCRALEDLTLDNC 249 (512)
Q Consensus 217 ~p~L~~L~L~~-~~~l~-~l~~~cp~Le~L~l~~c 249 (512)
|++|++|.|.+ ...+. ..+.+|++|+.|.+...
T Consensus 100 ~~~L~~l~L~~~i~~I~~~aF~~~~~L~~l~l~~n 134 (329)
T 3sb4_A 100 KQTLEKVILSEKIKNIEDAAFKGCDNLKICQIRKK 134 (329)
T ss_dssp CTTCCC-CBCTTCCEECTTTTTTCTTCCEEEBCCS
T ss_pred cCCCcEEECCccccchhHHHhhcCcccceEEcCCC
Confidence 56666666654 11111 23445666666666544
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.42 E-value=2.9e-05 Score=67.73 Aligned_cols=81 Identities=15% Similarity=0.106 Sum_probs=44.9
Q ss_pred eccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccc-hhcc
Q 043655 160 ITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLK-QLKV 236 (512)
Q Consensus 160 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~-~l~~ 236 (512)
..+.+|+.|+|++|... .++. ....+++|+.|+|+++.+.+-..+ ..+++|+.|+|.++. .+. .++.
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~---~~~~~~~L~~L~Ls~N~l~~~~~l------~~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN---LGATLDQFDAIDFSDNEIRKLDGF------PLLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC---GGGGTTCCSEEECCSSCCCEECCC------CCCSSCCEEECCSSCCCEECSCHHH
T ss_pred CCcCCceEEEeeCCCCc-hhHH---hhhcCCCCCEEECCCCCCCccccc------ccCCCCCEEECCCCcccccCcchhh
Confidence 45778888888884221 2221 122344888888887776543221 356666666666654 221 2234
Q ss_pred cccccceeeecccc
Q 043655 237 GCRALEDLTLDNCI 250 (512)
Q Consensus 237 ~cp~Le~L~l~~c~ 250 (512)
.+++|+.|++.++.
T Consensus 86 ~l~~L~~L~L~~N~ 99 (176)
T 1a9n_A 86 ALPDLTELILTNNS 99 (176)
T ss_dssp HCTTCCEEECCSCC
T ss_pred cCCCCCEEECCCCc
Confidence 55666666665553
No 126
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.41 E-value=0.0001 Score=65.99 Aligned_cols=122 Identities=25% Similarity=0.232 Sum_probs=73.4
Q ss_pred CCceeEEEeccCCCCCCCccee-ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655 139 NVEELDIEVATDDYFNLPRCVI-TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF 217 (512)
Q Consensus 139 ~v~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 217 (512)
.++.|++.... ...+|...+ .+++|++|+|+++... .+++. ....+++|++|+|+++.+.+-.. ..+ ..+
T Consensus 29 ~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~--~~l 99 (208)
T 2o6s_A 29 QTTYLDLETNS--LKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNG--VFNKLTSLTYLNLSTNQLQSLPN--GVF--DKL 99 (208)
T ss_dssp TCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCC-CCCTT--TTTTCTTCCEEECCSSCCCCCCT--TTT--TTC
T ss_pred CCcEEEcCCCc--cCcCChhhhcccccCcEEECCCCccC-ccChh--hcCCCCCcCEEECCCCcCCccCH--hHh--cCc
Confidence 45555554332 234554443 6889999999985322 23322 13468899999999887764221 111 368
Q ss_pred cccceecccccc--cc-chhcccccccceeeeccccCccceeE---e-ccCcceEEEeee
Q 043655 218 PHLKKLDLDACY--GL-KQLKVGCRALEDLTLDNCIQLCGLDI---F-GTKLERLRVASC 270 (512)
Q Consensus 218 p~L~~L~L~~~~--~l-~~l~~~cp~Le~L~l~~c~~l~~~~v---~-~~~L~~L~l~~c 270 (512)
++|+.|+|.++. ++ ...+..+++|+.|++.++.. ..+.. . .++|+.|.+.++
T Consensus 100 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSC
T ss_pred cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc-ceeCHHHhccCCCccEEEecCC
Confidence 999999998875 22 23356788999999988752 22211 1 245666655553
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.38 E-value=2.3e-06 Score=89.34 Aligned_cols=192 Identities=16% Similarity=0.065 Sum_probs=103.5
Q ss_pred cCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccccccc----------------cchhcccccccceee-ecccc
Q 043655 188 GFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACYG----------------LKQLKVGCRALEDLT-LDNCI 250 (512)
Q Consensus 188 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~~----------------l~~l~~~cp~Le~L~-l~~c~ 250 (512)
.+++|+.|+|+++.+.. +..-+ ..|++|+.|++.++.. ....+..+++|+.|+ +....
T Consensus 347 ~~~~L~~L~Ls~n~L~~---Lp~~i--~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~ 421 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTV---LQSEL--ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 421 (567)
T ss_dssp TTTTSSSCCCCHHHHHH---HHHHH--HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred cCccceeccCChhhHHh---hHHHH--HHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc
Confidence 46677777777665542 11111 2467777777654421 112234456666666 22211
Q ss_pred --Cccce--------eEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC-ccccCcccceeeEEeeEEc
Q 043655 251 --QLCGL--------DIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS-SSLENLASLHEASVGFILL 319 (512)
Q Consensus 251 --~l~~~--------~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~-~~l~~~~~L~~l~l~~~~~ 319 (512)
.+..+ .+....|+.|.+.++..... .. .-..++|+.|.++++.+... ..++++++|+.++++....
T Consensus 422 ~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l--p~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l 498 (567)
T 1dce_A 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 498 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC--CC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred cchhhhhhhhcccccccCccCceEEEecCCCCCCC--cC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCC
Confidence 01000 11124577777776543211 11 12456788888887766432 3466778888888775543
Q ss_pred ccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEE
Q 043655 320 HEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTL 399 (512)
Q Consensus 320 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L 399 (512)
.+ +. .+..+++|+.|+++.+.+..+.. +..+..+++|+.|+|+.+.-......+..++..+|+|+.|
T Consensus 499 ~~---------lp-~l~~l~~L~~L~Ls~N~l~~~~~---p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 499 EN---------VD-GVANLPRLQELLLCNNRLQQSAA---IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp CC---------CG-GGTTCSSCCEEECCSSCCCSSST---TGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CC---------Cc-ccCCCCCCcEEECCCCCCCCCCC---cHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 22 11 36677888888888776543320 1234467788888886543221122344566778888877
Q ss_pred E
Q 043655 400 I 400 (512)
Q Consensus 400 ~ 400 (512)
.
T Consensus 566 ~ 566 (567)
T 1dce_A 566 L 566 (567)
T ss_dssp E
T ss_pred C
Confidence 4
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.37 E-value=4.4e-05 Score=66.59 Aligned_cols=132 Identities=12% Similarity=0.076 Sum_probs=75.6
Q ss_pred ccccccceeeeccccCcccee-Ee--ccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCCccccCcccceee
Q 043655 236 VGCRALEDLTLDNCIQLCGLD-IF--GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITASSSLENLASLHEA 312 (512)
Q Consensus 236 ~~cp~Le~L~l~~c~~l~~~~-v~--~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~l~~~~~L~~l 312 (512)
..+++|+.|++.+|.. ..+. +. .++|+.|.+.+ +.+.....+..+++|+.+
T Consensus 16 ~~~~~L~~L~l~~n~l-~~i~~~~~~~~~L~~L~Ls~-------------------------N~l~~~~~l~~l~~L~~L 69 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSD-------------------------NEIRKLDGFPLLRRLKTL 69 (176)
T ss_dssp ECTTSCEEEECTTSCC-CSCCCGGGGTTCCSEEECCS-------------------------SCCCEECCCCCCSSCCEE
T ss_pred CCcCCceEEEeeCCCC-chhHHhhhcCCCCCEEECCC-------------------------CCCCcccccccCCCCCEE
Confidence 3678899999988852 2221 11 12455555544 433322334556666666
Q ss_pred EEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccCCcHHHHHHHHhh
Q 043655 313 SVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNKHNVQGLACLFRS 392 (512)
Q Consensus 313 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~ 392 (512)
+++.+....-. ..++..+++|+.|+++.+.+..+... .....+++|++|.+..+.-......-..++..
T Consensus 70 ~Ls~N~l~~~~--------~~~~~~l~~L~~L~L~~N~i~~~~~~---~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~ 138 (176)
T 1a9n_A 70 LVNNNRICRIG--------EGLDQALPDLTELILTNNSLVELGDL---DPLASLKSLTYLCILRNPVTNKKHYRLYVIYK 138 (176)
T ss_dssp ECCSSCCCEEC--------SCHHHHCTTCCEEECCSCCCCCGGGG---GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHH
T ss_pred ECCCCcccccC--------cchhhcCCCCCEEECCCCcCCcchhh---HhhhcCCCCCEEEecCCCCCCcHhHHHHHHHH
Confidence 66544332110 11346678888888888765433221 13446788999998764322111223346889
Q ss_pred CCCCcEEEEEee
Q 043655 393 SPSIHTLILKII 404 (512)
Q Consensus 393 cp~Le~L~l~~~ 404 (512)
+|+|+.|++...
T Consensus 139 l~~L~~Ld~~~n 150 (176)
T 1a9n_A 139 VPQVRVLDFQKV 150 (176)
T ss_dssp CTTCSEETTEEC
T ss_pred CCccceeCCCcC
Confidence 999999988754
No 129
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.28 E-value=0.00019 Score=65.00 Aligned_cols=145 Identities=15% Similarity=0.124 Sum_probs=87.8
Q ss_pred cEEEEecccCcc-ccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccc-hhccccccc
Q 043655 166 RVFKLRSRYRGF-RLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLK-QLKVGCRAL 241 (512)
Q Consensus 166 ~~L~L~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~-~l~~~cp~L 241 (512)
+.++++++ .+ .+|.. -.+.+++|+|+++.+.....- ..+ ..+++|+.|+|.++. .+. ..+..+++|
T Consensus 14 ~~l~~s~n--~l~~iP~~-----~~~~~~~L~L~~N~l~~~~~~-~~~--~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 14 TTVDCSNQ--KLNKIPEH-----IPQYTAELRLNNNEFTVLEAT-GIF--KKLPQLRKINFSNNKITDIEEGAFEGASGV 83 (220)
T ss_dssp TEEECCSS--CCSSCCSC-----CCTTCSEEECCSSCCCEECCC-CCG--GGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CEeEeCCC--CcccCccC-----CCCCCCEEEcCCCcCCccCch-hhh--ccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence 46777763 22 23321 245778999998877653110 111 257888888887765 222 245567778
Q ss_pred ceeeeccccCccceeEeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccCCC--ccccCcccceeeEEeeEEc
Q 043655 242 EDLTLDNCIQLCGLDIFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS--SSLENLASLHEASVGFILL 319 (512)
Q Consensus 242 e~L~l~~c~~l~~~~v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~ 319 (512)
+.|+|.++.. ..+.. ...-..++|++|.++++.+... ..+.++++|+.++++....
T Consensus 84 ~~L~Ls~N~l-~~~~~---------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 141 (220)
T 2v70_A 84 NEILLTSNRL-ENVQH---------------------KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141 (220)
T ss_dssp CEEECCSSCC-CCCCG---------------------GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC
T ss_pred CEEECCCCcc-CccCH---------------------hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC
Confidence 8888777652 11110 0001246777787777765433 3467889999999976543
Q ss_pred ccchhHHHHhHHHHHhhcCCcccEeeecchh
Q 043655 320 HEDLTSAKLQSVSNFLSGLSHARSLTLESPC 350 (512)
Q Consensus 320 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~ 350 (512)
..-. ...+..+++++.|+++.+.
T Consensus 142 ~~~~--------~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 142 TTVA--------PGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCBC--------TTTTTTCTTCCEEECCSCC
T ss_pred CEEC--------HHHhcCCCCCCEEEecCcC
Confidence 2211 1346778999999998765
No 130
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.27 E-value=0.00013 Score=73.50 Aligned_cols=42 Identities=31% Similarity=0.445 Sum_probs=38.1
Q ss_pred CCCccCCCChHHHHHHHccCCchhhHHHhhhcHhHHH------hhccC
Q 043655 22 GIDRISDLPDAILHHILFLLPIKSIAQTCTLSKRWRS------LWCSF 63 (512)
Q Consensus 22 ~~D~is~LPdevl~~Ils~L~~~d~~rts~lSrrWr~------lw~~~ 63 (512)
..|.|+.||+|++.+||+||+.+|+++++.|||+|+. +|+..
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~ 62 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREK 62 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhh
Confidence 3689999999999999999999999999999999996 57643
No 131
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.21 E-value=0.0005 Score=62.60 Aligned_cols=128 Identities=20% Similarity=0.050 Sum_probs=72.0
Q ss_pred CcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccc-hhcccccccceeeeccccCccceeEeccCcceE
Q 043655 189 FRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLK-QLKVGCRALEDLTLDNCIQLCGLDIFGTKLERL 265 (512)
Q Consensus 189 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~-~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L 265 (512)
.++|+.|+|+++.+.+... ..+ ..+++|+.|+|.++. .+. ..+..+++|+.|+|.++. +..+.-..
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~--~~~--~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~------ 107 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEP--GVF--DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAV------ 107 (229)
T ss_dssp CTTCSEEECCSSCCCCCCT--TTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT------
T ss_pred CCCCCEEEcCCCccCccCH--HHh--hCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCccChhH------
Confidence 5899999999988876311 111 368899999998876 222 345678889999988875 22221100
Q ss_pred EEeeeccccCCCceEEEeCCCcceEEeeccccCCC-ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEe
Q 043655 266 RVASCFDAYCDKSWVKIDASKLKVLNWEYNAITAS-SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSL 344 (512)
Q Consensus 266 ~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~~~-~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L 344 (512)
.-..++|++|.++++.+... ..+..+++|+.++++......-. ...+..+++++.|
T Consensus 108 ---------------~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~l~~L~~L 164 (229)
T 3e6j_A 108 ---------------FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIP--------HGAFDRLSSLTHA 164 (229)
T ss_dssp ---------------TTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCC--------TTTTTTCTTCCEE
T ss_pred ---------------hCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccC--------HHHHhCCCCCCEE
Confidence 00123444444444433221 22345566666665543321110 1235667778888
Q ss_pred eecchh
Q 043655 345 TLESPC 350 (512)
Q Consensus 345 ~l~~~~ 350 (512)
++.++.
T Consensus 165 ~l~~N~ 170 (229)
T 3e6j_A 165 YLFGNP 170 (229)
T ss_dssp ECTTSC
T ss_pred EeeCCC
Confidence 877654
No 132
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.21 E-value=8.2e-05 Score=74.84 Aligned_cols=41 Identities=34% Similarity=0.546 Sum_probs=37.6
Q ss_pred CCccCCCChH----HHHHHHccCCchhhHHHhhhcHhHHH------hhccC
Q 043655 23 IDRISDLPDA----ILHHILFLLPIKSIAQTCTLSKRWRS------LWCSF 63 (512)
Q Consensus 23 ~D~is~LPde----vl~~Ils~L~~~d~~rts~lSrrWr~------lw~~~ 63 (512)
.|.|+.||+| |+.+||+||+.+++++++.|||+|++ +|+..
T Consensus 8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~ 58 (435)
T 1p22_A 8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKL 58 (435)
T ss_dssp CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHH
T ss_pred cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 5899999999 99999999999999999999999995 57754
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.20 E-value=7.8e-06 Score=72.95 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=24.1
Q ss_pred CCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEee
Q 043655 155 LPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILF 203 (512)
Q Consensus 155 lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 203 (512)
+|..+..+++|++|+|++|. +.-.+ ....+++|+.|+|+++.+.
T Consensus 40 l~~~~~~l~~L~~L~ls~n~--l~~l~---~~~~l~~L~~L~l~~n~l~ 83 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNN--IEKIS---SLSGMENLRILSLGRNLIK 83 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEE--ESCCC---CHHHHTTCCEEEEEEEEEC
T ss_pred hhHHHhcCCCCCEEECCCCC--Ccccc---ccccCCCCCEEECCCCCcc
Confidence 34445556677777776632 21111 2235667777777766665
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.17 E-value=0.00054 Score=60.48 Aligned_cols=95 Identities=18% Similarity=0.199 Sum_probs=52.4
Q ss_pred ccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccc
Q 043655 148 ATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDA 227 (512)
Q Consensus 148 ~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~ 227 (512)
.......+|..+.. +|+.|.|+++.. ..+++. .....+++|++|+|+++.+.+.. ...+ ..+++|+.|+|.+
T Consensus 16 s~~~l~~ip~~~~~--~l~~L~l~~n~i-~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~--~~~~--~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 16 TGRGLKEIPRDIPL--HTTELLLNDNEL-GRISSD-GLFGRLPHLVKLELKRNQLTGIE--PNAF--EGASHIQELQLGE 87 (192)
T ss_dssp TTSCCSSCCSCCCT--TCSEEECCSCCC-CSBCCS-CSGGGCTTCCEEECCSSCCCCBC--TTTT--TTCTTCCEEECCS
T ss_pred CCCCcCcCccCCCC--CCCEEECCCCcC-CccCCc-cccccCCCCCEEECCCCCCCCcC--HhHc--CCcccCCEEECCC
Confidence 33344556665433 788888887422 122221 12346788888888887776521 1111 3567777777776
Q ss_pred cc--cc-chhcccccccceeeecccc
Q 043655 228 CY--GL-KQLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 228 ~~--~l-~~l~~~cp~Le~L~l~~c~ 250 (512)
+. ++ ...+...++|+.|+|.++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCc
Confidence 64 11 1223455666666666654
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.06 E-value=0.00068 Score=70.63 Aligned_cols=99 Identities=24% Similarity=0.209 Sum_probs=59.7
Q ss_pred CCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCc
Q 043655 139 NVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFP 218 (512)
Q Consensus 139 ~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p 218 (512)
.++.|++. ......+|. +..+++|+.|+|++|... .+|. ....+++|+.|+|+++.+.+-+.+ ..++
T Consensus 442 ~L~~L~Ls--~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~---~~~~l~~L~~L~Ls~N~l~~lp~l------~~l~ 508 (567)
T 1dce_A 442 DVRVLHLA--HKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPP---ALAALRCLEVLQASDNALENVDGV------ANLP 508 (567)
T ss_dssp TCSEEECT--TSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCG---GGGGCTTCCEEECCSSCCCCCGGG------TTCS
T ss_pred CceEEEec--CCCCCCCcC-ccccccCcEeecCccccc-ccch---hhhcCCCCCEEECCCCCCCCCccc------CCCC
Confidence 44444443 233344665 556778888888775322 3332 234677888888887777653222 3577
Q ss_pred ccceecccccc--cc--chhcccccccceeeecccc
Q 043655 219 HLKKLDLDACY--GL--KQLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 219 ~L~~L~L~~~~--~l--~~l~~~cp~Le~L~l~~c~ 250 (512)
+|+.|+|.++. ++ ...+..+++|+.|+|.++.
T Consensus 509 ~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 77777777764 33 3445567777777777764
No 136
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.98 E-value=0.0009 Score=60.49 Aligned_cols=103 Identities=24% Similarity=0.250 Sum_probs=66.9
Q ss_pred CCceeEEEeccCCCCCCCc-ceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655 139 NVEELDIEVATDDYFNLPR-CVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF 217 (512)
Q Consensus 139 ~v~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 217 (512)
+++.|++... ....+|. .+..+++|+.|+|++|... .+.+.. ..++++|++|+|+++.+..-.. .++ ..+
T Consensus 33 ~l~~L~l~~n--~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~--~~~l~~L~~L~Ls~N~l~~l~~--~~f--~~l 103 (220)
T 2v9t_B 33 TITEIRLEQN--TIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDA--FQGLRSLNSLVLYGNKITELPK--SLF--EGL 103 (220)
T ss_dssp TCCEEECCSS--CCCEECTTSSTTCTTCCEEECCSSCCC-EECTTT--TTTCSSCCEEECCSSCCCCCCT--TTT--TTC
T ss_pred CCCEEECCCC--cCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHH--hhCCcCCCEEECCCCcCCccCH--hHc--cCC
Confidence 4555655432 2223443 3335789999999985322 232222 3578999999999988875221 112 368
Q ss_pred cccceecccccc--cc-chhcccccccceeeecccc
Q 043655 218 PHLKKLDLDACY--GL-KQLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 218 p~L~~L~L~~~~--~l-~~l~~~cp~Le~L~l~~c~ 250 (512)
++|+.|+|.++. ++ ...+..+++|+.|+|.++.
T Consensus 104 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc
Confidence 999999999886 22 2345678899999988875
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.87 E-value=0.00016 Score=64.29 Aligned_cols=14 Identities=29% Similarity=0.192 Sum_probs=8.8
Q ss_pred CCCcceEEeecccc
Q 043655 284 ASKLKVLNWEYNAI 297 (512)
Q Consensus 284 ~p~L~~L~~~~~~~ 297 (512)
.++|++|.+.++.+
T Consensus 139 l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 139 LDKLEDLLLAGNPL 152 (198)
T ss_dssp TTTCSEEEECSCHH
T ss_pred CCCCCEEEecCCcc
Confidence 46677777666543
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.85 E-value=0.0019 Score=56.99 Aligned_cols=96 Identities=17% Similarity=0.163 Sum_probs=55.4
Q ss_pred EEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceec
Q 043655 145 IEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLD 224 (512)
Q Consensus 145 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~ 224 (512)
+.+.......+|..+. ++|+.|.|+++... .+| . ....+++|+.|+|+++.+..-.. ..+ ..+++|+.|+
T Consensus 15 l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip-~--~~~~l~~L~~L~Ls~N~i~~i~~--~~f--~~l~~L~~L~ 84 (193)
T 2wfh_A 15 VRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVP-K--ELSNYKHLTLIDLSNNRISTLSN--QSF--SNMTQLLTLI 84 (193)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCC-G--GGGGCTTCCEEECCSSCCCCCCT--TTT--TTCTTCCEEE
T ss_pred EEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhH-H--HhhcccCCCEEECCCCcCCEeCH--hHc--cCCCCCCEEE
Confidence 3333344455665443 57888888874221 222 1 23567888888888877765211 111 3567777777
Q ss_pred ccccc--ccc-hhcccccccceeeecccc
Q 043655 225 LDACY--GLK-QLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 225 L~~~~--~l~-~l~~~cp~Le~L~l~~c~ 250 (512)
|.++. .+. ..+..+++|+.|+|.++.
T Consensus 85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~ 113 (193)
T 2wfh_A 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGND 113 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccCEeCHHHhCCCCCCCEEECCCCC
Confidence 77765 222 234556777777777764
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.81 E-value=2.1e-05 Score=77.50 Aligned_cols=86 Identities=21% Similarity=0.129 Sum_probs=50.7
Q ss_pred cCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCc--cchhhhhcCCCCcccceecccccc----c---cc
Q 043655 162 SDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQ--PCLLDLFTDSSFPHLKKLDLDACY----G---LK 232 (512)
Q Consensus 162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~l~~l~~~~~~p~L~~L~L~~~~----~---l~ 232 (512)
+++|++|+|++|. +...........+++|++|+|++|.+.+. ..+...+. ..+++|++|+|.+|. + +.
T Consensus 100 ~~~L~~L~Ls~n~--l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~-~~~~~L~~L~Ls~n~l~~~~~~~l~ 176 (372)
T 3un9_A 100 RHALDEVNLASCQ--LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL-HDQCQITTLRLSNNPLTAAGVAVLM 176 (372)
T ss_dssp SSCEEEEECTTCC--CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH-STTCCCCEEECCSSCCHHHHHHHHH
T ss_pred CCCceEEEecCCC--CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH-hcCCccceeeCCCCCCChHHHHHHH
Confidence 3678888888742 21111111233567888888888877543 12222221 346788888888775 1 22
Q ss_pred hhcccccccceeeecccc
Q 043655 233 QLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 233 ~l~~~cp~Le~L~l~~c~ 250 (512)
..+..++.|++|+|.+|.
T Consensus 177 ~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp HHHHTCSSCCEEECTTSS
T ss_pred HHHhcCCCcCEEeCCCCC
Confidence 233567788888888875
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.80 E-value=0.0023 Score=55.36 Aligned_cols=91 Identities=24% Similarity=0.253 Sum_probs=50.1
Q ss_pred CCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc-
Q 043655 151 DYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY- 229 (512)
Q Consensus 151 ~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~- 229 (512)
....+|..+. ++|+.|+|+++... .+++. ....+++|++|+|+++.+..-.. ..+ ..+++|+.|+|.++.
T Consensus 18 ~l~~~p~~~~--~~l~~L~l~~n~l~-~~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~--~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 18 GLTSVPTGIP--SSATRLELESNKLQ-SLPHG--VFDKLTQLTKLSLSQNQIQSLPD--GVF--DKLTKLTILYLHENKL 88 (177)
T ss_dssp CCSSCCTTCC--TTCSEEECCSSCCC-CCCTT--TTTTCTTCSEEECCSSCCCCCCT--TTT--TTCTTCCEEECCSSCC
T ss_pred CCccCCCCCC--CCCcEEEeCCCccc-EeCHH--HhcCcccccEEECCCCcceEeCh--hHc--cCCCccCEEECCCCCc
Confidence 3344554433 57888888874221 22221 12457788888888777654211 111 256777777776654
Q ss_pred -cc-chhcccccccceeeecccc
Q 043655 230 -GL-KQLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 230 -~l-~~l~~~cp~Le~L~l~~c~ 250 (512)
++ ...+..+++|+.|++.++.
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~ 111 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQ 111 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccCHHHhhCCcccCEEECcCCc
Confidence 22 1233456667777766653
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.71 E-value=0.0013 Score=63.35 Aligned_cols=100 Identities=13% Similarity=0.101 Sum_probs=62.8
Q ss_pred CCCcceEEeeccccCC--CccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCccc-Eeeecchhhhhhcccccc
Q 043655 284 ASKLKVLNWEYNAITA--SSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHAR-SLTLESPCIEILSNRNYF 360 (512)
Q Consensus 284 ~p~L~~L~~~~~~~~~--~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~-~L~l~~~~~~~~~~~~~~ 360 (512)
+++|+++++.++.+.. ...+.++.+|+++.+.... .... ...+.+|++|+ .+.+.. .+..+..
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni--~~I~-------~~aF~~~~~L~~~l~l~~-~l~~I~~---- 290 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNL--KTIG-------QRVFSNCGRLAGTLELPA-SVTAIEF---- 290 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTC--CEEC-------TTTTTTCTTCCEEEEECT-TCCEECT----
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCccc--ceeh-------HHHhhCChhccEEEEEcc-cceEEch----
Confidence 6889999988754432 2457789999998885421 1000 12477889999 999976 3333322
Q ss_pred cccccccccceEEEEeeccCCcHHHH-HHHHhhCCCCcEEEE
Q 043655 361 TNLHTFTNLKSLELHTGFNKHNVQGL-ACLFRSSPSIHTLIL 401 (512)
Q Consensus 361 ~~~~~~~~L~~L~L~~~~~~~~~~~l-~~~L~~cp~Le~L~l 401 (512)
.....+++|+.|.+....- ..+ ...+.+|++|++|..
T Consensus 291 ~aF~~c~~L~~l~l~~n~i----~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 291 GAFMGCDNLRYVLATGDKI----TTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTTCTTEEEEEECSSCC----CEECTTTTCTTCCCCEEEC
T ss_pred hhhhCCccCCEEEeCCCcc----CccchhhhcCCcchhhhcc
Confidence 2445778899998843211 111 224678999999863
No 142
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.64 E-value=0.0025 Score=61.99 Aligned_cols=210 Identities=14% Similarity=0.099 Sum_probs=105.4
Q ss_pred cCCceeEEEeccCCCCCCCccee-ccCCccEEEEecccCccccCCCccccccCcccceEE-eeeEEeeC--ccchhhhhc
Q 043655 138 HNVEELDIEVATDDYFNLPRCVI-TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLS-LSLVILFN--QPCLLDLFT 213 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~-L~~~~~~~--~~~l~~l~~ 213 (512)
.++++|++... ....+|...| .+++|++|+|++|...-.+++.. ..++++|+++. +.++.+.. .+.+
T Consensus 30 ~~l~~L~Ls~N--~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~--f~~L~~l~~~l~~~~N~l~~l~~~~f----- 100 (350)
T 4ay9_X 30 RNAIELRFVLT--KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV--FSNLPKLHEIRIEKANNLLYINPEAF----- 100 (350)
T ss_dssp TTCSEEEEESC--CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS--BCSCTTCCEEEEEEETTCCEECTTSB-----
T ss_pred CCCCEEEccCC--cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH--hhcchhhhhhhcccCCcccccCchhh-----
Confidence 45666766632 2335565444 57888888888753222233321 23456655533 33333322 1112
Q ss_pred CCCCcccceecccccc--ccc-hhcccccccceeeeccccCccceeEe-----ccCcceEEEeeeccccCCCceEEEeCC
Q 043655 214 DSSFPHLKKLDLDACY--GLK-QLKVGCRALEDLTLDNCIQLCGLDIF-----GTKLERLRVASCFDAYCDKSWVKIDAS 285 (512)
Q Consensus 214 ~~~~p~L~~L~L~~~~--~l~-~l~~~cp~Le~L~l~~c~~l~~~~v~-----~~~L~~L~l~~c~~~~~~~~~~~i~~p 285 (512)
..+++|+.|++.++. .+. ........+..|.+.++..+..+... ...++.|.+.++........ ....+
T Consensus 101 -~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~--~f~~~ 177 (350)
T 4ay9_X 101 -QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS--AFNGT 177 (350)
T ss_dssp -CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT--SSTTE
T ss_pred -hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChh--hcccc
Confidence 367888888887764 121 12234456667777666554443322 13566676665432110000 01234
Q ss_pred CcceEEeecc-ccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchh-hhhhccccccc
Q 043655 286 KLKVLNWEYN-AITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPC-IEILSNRNYFT 361 (512)
Q Consensus 286 ~L~~L~~~~~-~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~-~~~~~~~~~~~ 361 (512)
+|+.+.+.+. .+... ..+.++++|+.++++......-. ...+.+++.|.+.... ++.+.
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp-----------~~~~~~L~~L~~l~~~~l~~lP------ 240 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP-----------SYGLENLKKLRARSTYNLKKLP------ 240 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC-----------SSSCTTCCEEECTTCTTCCCCC------
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC-----------hhhhccchHhhhccCCCcCcCC------
Confidence 5677776543 22222 23567888888888754321100 1224455665544321 22211
Q ss_pred ccccccccceEEEEe
Q 043655 362 NLHTFTNLKSLELHT 376 (512)
Q Consensus 362 ~~~~~~~L~~L~L~~ 376 (512)
....+++|+.+.+..
T Consensus 241 ~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 241 TLEKLVALMEASLTY 255 (350)
T ss_dssp CTTTCCSCCEEECSC
T ss_pred CchhCcChhhCcCCC
Confidence 455788888888753
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.63 E-value=0.0036 Score=55.18 Aligned_cols=104 Identities=20% Similarity=0.187 Sum_probs=69.9
Q ss_pred cCCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSF 217 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 217 (512)
.+++.|++... ....+|..+..+++|++|+|++|... .+++. ...++++|++|+|+++.+..-.. ..+ ..+
T Consensus 31 ~~l~~L~L~~n--~i~~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~--~f~~l~~L~~L~Ls~N~l~~i~~--~~f--~~l 101 (193)
T 2wfh_A 31 RDVTELYLDGN--QFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQ--SFSNMTQLLTLILSYNRLRCIPP--RTF--DGL 101 (193)
T ss_dssp TTCCEEECCSS--CCCSCCGGGGGCTTCCEEECCSSCCC-CCCTT--TTTTCTTCCEEECCSSCCCBCCT--TTT--TTC
T ss_pred CCCCEEECCCC--cCchhHHHhhcccCCCEEECCCCcCC-EeCHh--HccCCCCCCEEECCCCccCEeCH--HHh--CCC
Confidence 35666665533 33467766678899999999985322 23322 23578999999999988876321 111 468
Q ss_pred cccceecccccc--ccc-hhcccccccceeeecccc
Q 043655 218 PHLKKLDLDACY--GLK-QLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 218 p~L~~L~L~~~~--~l~-~l~~~cp~Le~L~l~~c~ 250 (512)
++|+.|+|.++. .+. ..+..+++|+.|++.++.
T Consensus 102 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 102 KSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 999999999876 222 245567888888888764
No 144
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.56 E-value=0.0023 Score=62.62 Aligned_cols=123 Identities=19% Similarity=0.035 Sum_probs=77.4
Q ss_pred CCceeEEEeccCCCCCCCccee--ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655 139 NVEELDIEVATDDYFNLPRCVI--TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS 216 (512)
Q Consensus 139 ~v~~L~l~~~~~~~~~lp~~l~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 216 (512)
.++.|++.. .....++...+ .+++|++|+|++|.. -.+++.. ...+++|++|+|+++.+..-.. ..+ ..
T Consensus 40 ~l~~L~Ls~--N~l~~l~~~~~~~~l~~L~~L~L~~N~i-~~i~~~~--~~~l~~L~~L~Ls~N~l~~~~~--~~~--~~ 110 (361)
T 2xot_A 40 YTALLDLSH--NNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEA--FVPVPNLRYLDLSSNHLHTLDE--FLF--SD 110 (361)
T ss_dssp TCSEEECCS--SCCCEECTTSSSSCCTTCCEEECCSSCC-CEECTTT--TTTCTTCCEEECCSSCCCEECT--TTT--TT
T ss_pred CCCEEECCC--CCCCccChhhhhhcccccCEEECCCCcC-CccChhh--ccCCCCCCEEECCCCcCCcCCH--HHh--CC
Confidence 345555542 22333444433 678999999998532 1333322 3468899999999888764211 112 46
Q ss_pred Ccccceecccccc--cc-chhcccccccceeeeccccCcccee-------EeccCcceEEEeeec
Q 043655 217 FPHLKKLDLDACY--GL-KQLKVGCRALEDLTLDNCIQLCGLD-------IFGTKLERLRVASCF 271 (512)
Q Consensus 217 ~p~L~~L~L~~~~--~l-~~l~~~cp~Le~L~l~~c~~l~~~~-------v~~~~L~~L~l~~c~ 271 (512)
+++|+.|+|.++. .+ ...+..+++|+.|+|.++.. ..+. -..++|+.|.+.++.
T Consensus 111 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CTTCCEEECCSSC
T ss_pred CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCCcCCEEECCCCC
Confidence 8999999999886 22 34456789999999998853 2221 124788888887753
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.54 E-value=0.0045 Score=53.28 Aligned_cols=95 Identities=19% Similarity=0.223 Sum_probs=53.0
Q ss_pred eccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceeccc
Q 043655 147 VATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLD 226 (512)
Q Consensus 147 ~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~ 226 (512)
+.......+|..+. ++|++|+|++|... .+++. ....+++|++|+|+++.+..-.. ..+ ..+++|+.|+|.
T Consensus 16 ~s~n~l~~ip~~~~--~~l~~L~L~~N~i~-~~~~~--~~~~l~~L~~L~Ls~N~l~~l~~--~~f--~~l~~L~~L~L~ 86 (170)
T 3g39_A 16 CSGKSLASVPTGIP--TTTQVLYLYDNQIT-KLEPG--VFDRLTQLTRLDLDNNQLTVLPA--GVF--DKLTQLTQLSLN 86 (170)
T ss_dssp CTTSCCSSCCSCCC--TTCSEEECCSSCCC-CCCTT--TTTTCTTCSEEECCSSCCCCCCT--TTT--TTCTTCCEEECC
T ss_pred eCCCCcCccCccCC--CCCcEEEcCCCcCC-ccChh--hhcCcccCCEEECCCCCcCccCh--hhc--cCCCCCCEEECC
Confidence 33344455665543 67888888874221 22222 13457788888888777764211 111 256777777777
Q ss_pred ccc--ccc-hhcccccccceeeecccc
Q 043655 227 ACY--GLK-QLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 227 ~~~--~l~-~l~~~cp~Le~L~l~~c~ 250 (512)
++. .+. ..+..+++|+.|+|.++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 664 222 234456667666666653
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.52 E-value=0.0033 Score=55.31 Aligned_cols=103 Identities=16% Similarity=0.111 Sum_probs=66.6
Q ss_pred CCceeEEEeccCCCCCCCcc--eeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655 139 NVEELDIEVATDDYFNLPRC--VITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS 216 (512)
Q Consensus 139 ~v~~L~l~~~~~~~~~lp~~--l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 216 (512)
.++.|.+... ....++.. +...++|++|+|++|... .+++. ...++++|++|+|+++.+.+... ..+ ..
T Consensus 30 ~l~~L~l~~n--~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~--~~~--~~ 100 (192)
T 1w8a_A 30 HTTELLLNDN--ELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPN--AFEGASHIQELQLGENKIKEISN--KMF--LG 100 (192)
T ss_dssp TCSEEECCSC--CCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTT--TTTTCTTCCEEECCSCCCCEECS--SSS--TT
T ss_pred CCCEEECCCC--cCCccCCccccccCCCCCEEECCCCCCC-CcCHh--HcCCcccCCEEECCCCcCCccCH--HHh--cC
Confidence 4555555432 22334432 447899999999985322 22222 23468999999999988875321 111 36
Q ss_pred Ccccceecccccc--cc-chhcccccccceeeecccc
Q 043655 217 FPHLKKLDLDACY--GL-KQLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 217 ~p~L~~L~L~~~~--~l-~~l~~~cp~Le~L~l~~c~ 250 (512)
+++|+.|+|.++. ++ ...+...++|+.|+|.++.
T Consensus 101 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 8999999999886 22 3345567888888888765
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.48 E-value=0.0051 Score=53.17 Aligned_cols=94 Identities=18% Similarity=0.200 Sum_probs=51.7
Q ss_pred ccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccc
Q 043655 148 ATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDA 227 (512)
Q Consensus 148 ~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~ 227 (512)
.......+|..+. ++|++|+|++|... .+++. ....+++|++|+|+++.+.+-.. ..+ ..+++|+.|+|.+
T Consensus 20 ~~n~l~~iP~~~~--~~L~~L~Ls~N~l~-~~~~~--~~~~l~~L~~L~Ls~N~l~~i~~--~~~--~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 20 QNIRLASVPAGIP--TDKQRLWLNNNQIT-KLEPG--VFDHLVNLQQLYFNSNKLTAIPT--GVF--DKLTQLTQLDLND 90 (174)
T ss_dssp CSSCCSSCCSCCC--TTCSEEECCSSCCC-CCCTT--TTTTCTTCCEEECCSSCCCCCCT--TTT--TTCTTCCEEECCS
T ss_pred CCCCCCccCCCcC--CCCcEEEeCCCCcc-ccCHH--HhcCCcCCCEEECCCCCCCccCh--hHh--CCcchhhEEECCC
Confidence 3333445665543 67888888874221 22222 13457788888888777665211 111 2567777777766
Q ss_pred cc--ccc-hhcccccccceeeecccc
Q 043655 228 CY--GLK-QLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 228 ~~--~l~-~l~~~cp~Le~L~l~~c~ 250 (512)
+. .+. ..+..+++|+.|+|.++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CccceeCHHHhccccCCCEEEeCCCC
Confidence 54 222 224456666666666653
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.18 E-value=0.0088 Score=51.62 Aligned_cols=104 Identities=22% Similarity=0.262 Sum_probs=66.6
Q ss_pred cCCceeEEEeccCCCCCCCccee-ccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCC
Q 043655 138 HNVEELDIEVATDDYFNLPRCVI-TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSS 216 (512)
Q Consensus 138 ~~v~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 216 (512)
.+++.|++.... ...+|...+ .+++|++|+|++|... .+++. ....+++|++|+|+++.+.+... ..+ ..
T Consensus 28 ~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~--~~~~l~~L~~L~l~~N~l~~~~~--~~~--~~ 98 (177)
T 2o6r_A 28 SSATRLELESNK--LQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDG--VFDKLTKLTILYLHENKLQSLPN--GVF--DK 98 (177)
T ss_dssp TTCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCC-CCCTT--TTTTCTTCCEEECCSSCCCCCCT--TTT--TT
T ss_pred CCCcEEEeCCCc--ccEeCHHHhcCcccccEEECCCCcce-EeChh--HccCCCccCEEECCCCCccccCH--HHh--hC
Confidence 356666655322 234555443 6789999999985321 23322 13468999999999988775321 111 36
Q ss_pred Ccccceecccccc--ccc-hhcccccccceeeecccc
Q 043655 217 FPHLKKLDLDACY--GLK-QLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 217 ~p~L~~L~L~~~~--~l~-~l~~~cp~Le~L~l~~c~ 250 (512)
+++|+.|+|.++. ++. .++..+++|+.|++.++.
T Consensus 99 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 99 LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 8999999998875 222 234567888888888875
No 149
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.12 E-value=0.0022 Score=68.92 Aligned_cols=101 Identities=20% Similarity=0.096 Sum_probs=59.1
Q ss_pred CCceeEEEeccCCCCCCCcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCc
Q 043655 139 NVEELDIEVATDDYFNLPRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFP 218 (512)
Q Consensus 139 ~v~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p 218 (512)
.++.|+|. ......+|..++.+++|++|+|++|... .+|. ....+++|+.|+|+++.+..- ..-+ ..++
T Consensus 225 ~L~~L~Ls--~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~---~~~~l~~L~~L~Ls~N~l~~l---p~~~--~~l~ 293 (727)
T 4b8c_D 225 LWHALDLS--NLQIFNISANIFKYDFLTRLYLNGNSLT-ELPA---EIKNLSNLRVLDLSHNRLTSL---PAEL--GSCF 293 (727)
T ss_dssp CCCEEECT--TSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCG---GGGGGTTCCEEECTTSCCSSC---CSSG--GGGT
T ss_pred CCcEEECC--CCCCCCCChhhcCCCCCCEEEeeCCcCc-ccCh---hhhCCCCCCEEeCcCCcCCcc---Chhh--cCCC
Confidence 34444443 3333467777777777777777775322 3332 124577777777777776531 1111 2567
Q ss_pred ccceecccccc--ccchhcccccccceeeecccc
Q 043655 219 HLKKLDLDACY--GLKQLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 219 ~L~~L~L~~~~--~l~~l~~~cp~Le~L~l~~c~ 250 (512)
+|+.|+|.++. .+..-+..+++|+.|+|.++.
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence 77777777764 333335566777777777764
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.09 E-value=0.018 Score=56.98 Aligned_cols=107 Identities=15% Similarity=0.142 Sum_probs=50.2
Q ss_pred CCcceEEeecccc-CCCccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhccccccccc
Q 043655 285 SKLKVLNWEYNAI-TASSSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNL 363 (512)
Q Consensus 285 p~L~~L~~~~~~~-~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~ 363 (512)
.+|+.+.+..... -....+.++++|+.+.+.......+.. ..--...+.+|++|+.+.+... ++.+.. ...
T Consensus 248 ~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~---~~I~~~aF~~c~~L~~l~l~~~-i~~I~~----~aF 319 (401)
T 4fdw_A 248 SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPE---AMIHPYCLEGCPKLARFEIPES-IRILGQ----GLL 319 (401)
T ss_dssp CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTT---CEECTTTTTTCTTCCEECCCTT-CCEECT----TTT
T ss_pred CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcc---cEECHHHhhCCccCCeEEeCCc-eEEEhh----hhh
Confidence 3555555532110 012345567777777664322110000 0000123667777888777632 222221 133
Q ss_pred ccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEEee
Q 043655 364 HTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILKII 404 (512)
Q Consensus 364 ~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~~~ 404 (512)
..+.+|+.|.|.......+ ...+..| +|++|.+...
T Consensus 320 ~~c~~L~~l~lp~~l~~I~----~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 320 GGNRKVTQLTIPANVTQIN----FSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TTCCSCCEEEECTTCCEEC----TTSSSSS-CCCEEEECCS
T ss_pred cCCCCccEEEECccccEEc----HHhCCCC-CCCEEEEcCC
Confidence 4566777777732211100 1234577 8888887653
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.07 E-value=0.0024 Score=55.97 Aligned_cols=96 Identities=13% Similarity=0.059 Sum_probs=60.4
Q ss_pred cCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEE--EeeccC-
Q 043655 304 ENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLEL--HTGFNK- 380 (512)
Q Consensus 304 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L--~~~~~~- 380 (512)
...+.|++++++.+...+. ....+...+...++|+.|+|+.+.+...........+...++|++|+| ..+.-.
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~----g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDP----VAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp TTCCSCCEEECTTSCCCHH----HHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HhCCCcCEEECcCCCCChH----HHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 3456677777765543322 123456677778889999998876433221111134456678999999 433211
Q ss_pred CcHHHHHHHHhhCCCCcEEEEEe
Q 043655 381 HNVQGLACLFRSSPSIHTLILKI 403 (512)
Q Consensus 381 ~~~~~l~~~L~~cp~Le~L~l~~ 403 (512)
.....+...++.+++|++|++..
T Consensus 138 ~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 138 NVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHHHHhCCCcCEEeccC
Confidence 23345778899999999999864
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.76 E-value=0.021 Score=56.62 Aligned_cols=123 Identities=10% Similarity=0.125 Sum_probs=58.4
Q ss_pred cccccccceeeeccccCcccee---EeccCcceEEEeeeccccCCCceEEEeCCCcceEEeeccccC-------CCcccc
Q 043655 235 KVGCRALEDLTLDNCIQLCGLD---IFGTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWEYNAIT-------ASSSLE 304 (512)
Q Consensus 235 ~~~cp~Le~L~l~~c~~l~~~~---v~~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~~~~~~-------~~~~l~ 304 (512)
+.+|++|+.+.+... +..+. ....+|+.+.+...... . ....-..+++|+.+.+.+.... ....+.
T Consensus 222 F~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp~~i~~-I-~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~ 297 (401)
T 4fdw_A 222 FLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLPNGVTN-I-ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE 297 (401)
T ss_dssp TTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEETTCCE-E-CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT
T ss_pred hhCCCCCCEEecCCC--ccCccccccccCCccEEEeCCCccE-E-ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh
Confidence 445666666666541 22111 11246666666331100 0 0000114677777777654321 123456
Q ss_pred CcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEe
Q 043655 305 NLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHT 376 (512)
Q Consensus 305 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 376 (512)
++++|+.+.+.... .... ...+.+|++|+.+.|... +..+.. .....+ +|+.|.+..
T Consensus 298 ~c~~L~~l~l~~~i--~~I~-------~~aF~~c~~L~~l~lp~~-l~~I~~----~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 298 GCPKLARFEIPESI--RILG-------QGLLGGNRKVTQLTIPAN-VTQINF----SAFNNT-GIKEVKVEG 354 (401)
T ss_dssp TCTTCCEECCCTTC--CEEC-------TTTTTTCCSCCEEEECTT-CCEECT----TSSSSS-CCCEEEECC
T ss_pred CCccCCeEEeCCce--EEEh-------hhhhcCCCCccEEEECcc-ccEEcH----HhCCCC-CCCEEEEcC
Confidence 77777777664210 0000 123666777887777533 222211 133345 777777754
No 153
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=95.72 E-value=0.0031 Score=67.85 Aligned_cols=106 Identities=15% Similarity=0.047 Sum_probs=64.0
Q ss_pred CcceeccCCccEEEEecccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccch
Q 043655 156 PRCVITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQ 233 (512)
Q Consensus 156 p~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~ 233 (512)
|..+..++.|+.|+|++|... .++.. ...+++|++|+|+++.+..- ..-+ ..+++|+.|+|.++. .+..
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~---~~~l~~L~~L~Ls~N~l~~l---p~~~--~~l~~L~~L~Ls~N~l~~lp~ 287 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISAN---IFKYDFLTRLYLNGNSLTEL---PAEI--KNLSNLRVLDLSHNRLTSLPA 287 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGG---GGGCCSCSCCBCTTSCCSCC---CGGG--GGGTTCCEEECTTSCCSSCCS
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChh---hcCCCCCCEEEeeCCcCccc---Chhh--hCCCCCCEEeCcCCcCCccCh
Confidence 444456788888888885322 33332 23688888888888877632 1112 257888888888876 3434
Q ss_pred hcccccccceeeeccccCcccee--Ee-ccCcceEEEeeec
Q 043655 234 LKVGCRALEDLTLDNCIQLCGLD--IF-GTKLERLRVASCF 271 (512)
Q Consensus 234 l~~~cp~Le~L~l~~c~~l~~~~--v~-~~~L~~L~l~~c~ 271 (512)
-+..+++|+.|+|.+|. +..+. +. .++|+.|.|.++.
T Consensus 288 ~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSC
T ss_pred hhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCc
Confidence 45677888888888874 23221 11 2577777776653
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=94.96 E-value=0.022 Score=55.08 Aligned_cols=91 Identities=20% Similarity=0.190 Sum_probs=57.4
Q ss_pred CCCCCCcceeccCCccEEEEec-ccCccccCCCccccccCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc
Q 043655 151 DYFNLPRCVITSDSLRVFKLRS-RYRGFRLPPSSVVAGGFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY 229 (512)
Q Consensus 151 ~~~~lp~~l~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~ 229 (512)
....+|. +..+++|+.|+|++ |.. -.+++. ...++++|+.|+|+++.+.+-. ...+ ..+++|+.|+|.++.
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l-~~~~~~--~~~~l~~L~~L~l~~N~l~~~~--~~~~--~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHL-QHLELR--DLRGLGELRNLTIVKSGLRFVA--PDAF--HFTPRLSRLNLSFNA 91 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSC-CEECGG--GSCSCCCCSEEECCSSCCCEEC--TTGG--GSCSCCCEEECCSSC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCC-CCcChh--HhccccCCCEEECCCCccceeC--HHHh--cCCcCCCEEeCCCCc
Confidence 4556787 66788899999984 422 233322 1346889999999988776521 1112 368889999998875
Q ss_pred --ccc-hhcccccccceeeecccc
Q 043655 230 --GLK-QLKVGCRALEDLTLDNCI 250 (512)
Q Consensus 230 --~l~-~l~~~cp~Le~L~l~~c~ 250 (512)
.+. .++... .|+.|.|.++.
T Consensus 92 l~~~~~~~~~~~-~L~~l~l~~N~ 114 (347)
T 2ifg_A 92 LESLSWKTVQGL-SLQELVLSGNP 114 (347)
T ss_dssp CSCCCSTTTCSC-CCCEEECCSSC
T ss_pred cceeCHHHcccC-CceEEEeeCCC
Confidence 222 122222 38888887754
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=94.33 E-value=0.039 Score=47.25 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=61.2
Q ss_pred CCcceEEeeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccc
Q 043655 285 SKLKVLNWEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTN 362 (512)
Q Consensus 285 p~L~~L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~ 362 (512)
++|++|.++++.+... ..+.++++|+.++++......-. ...+..+++|+.|+++.+.+..+.. ..
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--------~~~f~~l~~L~~L~L~~N~l~~~~~----~~ 97 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP--------AGVFDKLTQLTQLSLNDNQLKSIPR----GA 97 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC--------TTTTTTCTTCCEEECCSSCCCCCCT----TT
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC--------hhhccCCCCCCEEECCCCccCEeCH----HH
Confidence 4566666666554332 23567777777777655432211 1235678889999998877554332 13
Q ss_pred cccccccceEEEEeeccCC---cHHHHHHHHhhCCCC
Q 043655 363 LHTFTNLKSLELHTGFNKH---NVQGLACLFRSSPSI 396 (512)
Q Consensus 363 ~~~~~~L~~L~L~~~~~~~---~~~~l~~~L~~cp~L 396 (512)
...+++|++|+|....-.+ +...+..+++.-+.+
T Consensus 98 ~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~ 134 (170)
T 3g39_A 98 FDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGL 134 (170)
T ss_dssp TTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGG
T ss_pred hcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcce
Confidence 4567899999997653222 356677777776654
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.19 E-value=0.053 Score=53.47 Aligned_cols=99 Identities=15% Similarity=0.167 Sum_probs=50.7
Q ss_pred CCCcceEEeeccccCCCccccCcccceeeEEeeEEc-ccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccc
Q 043655 284 ASKLKVLNWEYNAITASSSLENLASLHEASVGFILL-HEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTN 362 (512)
Q Consensus 284 ~p~L~~L~~~~~~~~~~~~l~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~ 362 (512)
++.++.+.+....+. ...+.++.+|+++.+..... .++ ..+.+|.+|+.++|... ++.+.. ..
T Consensus 275 ~~~l~~~~~~~~~i~-~~~F~~~~~L~~i~l~~~i~~I~~----------~aF~~c~~L~~i~lp~~-v~~I~~----~a 338 (394)
T 4fs7_A 275 CSGLKKVIYGSVIVP-EKTFYGCSSLTEVKLLDSVKFIGE----------EAFESCTSLVSIDLPYL-VEEIGK----RS 338 (394)
T ss_dssp CTTCCEEEECSSEEC-TTTTTTCTTCCEEEECTTCCEECT----------TTTTTCTTCCEECCCTT-CCEECT----TT
T ss_pred ccccceeccCceeec-cccccccccccccccccccceech----------hhhcCCCCCCEEEeCCc-ccEEhH----Hh
Confidence 344555544433222 23355677787776632110 011 13667888888888532 222221 13
Q ss_pred cccccccceEEEEeeccCCcHHHHHHHHhhCCCCcEEEEE
Q 043655 363 LHTFTNLKSLELHTGFNKHNVQGLACLFRSSPSIHTLILK 402 (512)
Q Consensus 363 ~~~~~~L~~L~L~~~~~~~~~~~l~~~L~~cp~Le~L~l~ 402 (512)
...+.+|+.+.|......-+ ...+..|++|+++.|.
T Consensus 339 F~~c~~L~~i~lp~~l~~I~----~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 339 FRGCTSLSNINFPLSLRKIG----ANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTCTTCCEECCCTTCCEEC----TTTBTTCTTCCEEEEE
T ss_pred ccCCCCCCEEEECccccEeh----HHHhhCCCCCCEEEEC
Confidence 34566777777632111100 1235788999988874
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.01 E-value=0.049 Score=47.40 Aligned_cols=131 Identities=12% Similarity=0.084 Sum_probs=72.3
Q ss_pred hHHHHHhhcCCcccEeeecch-hhhhhcccccccccccccccceEEEEeeccC-CcHHHHHHHHhhCCCCcEEEEEeecc
Q 043655 329 QSVSNFLSGLSHARSLTLESP-CIEILSNRNYFTNLHTFTNLKSLELHTGFNK-HNVQGLACLFRSSPSIHTLILKIIND 406 (512)
Q Consensus 329 ~~~~~~l~~l~~l~~L~l~~~-~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~l~~~L~~cp~Le~L~l~~~~~ 406 (512)
..+...+...++++.|+++.+ .+...........+...++|++|+|+.+.-. .....+...++..++|++|+|....-
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 345677788888888888776 4322111111123344668888888754322 22345677788888999988864211
Q ss_pred cchhhhcccccccCccCccchhhhhccccCchhhhcCccEEEE--eeec-cchhHHHHHHHHHhcCccccceEEEec
Q 043655 407 YKIQRRQWNRDLWDMYTSEEEQYWQSQSQTLKPFLNNLNVVEI--HGFL-ECENEVSLAKFLLKHGKALQEMTLCTG 480 (512)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~L~~v~i--~~~~-g~~~e~~l~~~ll~~a~~L~~m~i~~~ 480 (512)
. +........... ...+|+++.+ .+-. +.+....+++ .++..+.|+.+.+...
T Consensus 106 ~-------------------~~g~~~l~~~L~-~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 106 S-------------------GSGILALVEALQ-SNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFT 161 (185)
T ss_dssp C-------------------HHHHHHHHHGGG-GCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCS
T ss_pred C-------------------HHHHHHHHHHHH-hCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCC
Confidence 0 000000000000 1357888888 4333 3344444554 5556677999988654
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=93.34 E-value=0.03 Score=51.81 Aligned_cols=38 Identities=26% Similarity=0.168 Sum_probs=19.0
Q ss_pred cCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc
Q 043655 188 GFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY 229 (512)
Q Consensus 188 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~ 229 (512)
.+++|+.|+|+++.+.+...+..+ ..+ +|+.|+|.++.
T Consensus 194 ~l~~L~~L~Ls~N~i~~~~~l~~l---~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 194 KAPNLKILNLSGNELKSERELDKI---KGL-KLEELWLDGNS 231 (267)
T ss_dssp HSTTCCEEECTTSCCCSGGGGGGG---TTS-CCSEEECTTST
T ss_pred hCCCCCEEECCCCccCCchhhhhc---ccC-CcceEEccCCc
Confidence 466666666666665544333322 122 55555555543
No 159
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=93.07 E-value=0.053 Score=46.59 Aligned_cols=98 Identities=13% Similarity=0.127 Sum_probs=56.9
Q ss_pred CCcceEEeeccccCCC--ccccCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccc
Q 043655 285 SKLKVLNWEYNAITAS--SSLENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTN 362 (512)
Q Consensus 285 p~L~~L~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~ 362 (512)
++|+.|.++++.+... ..+.++++|+.++++......-. ...+..+++|+.|+++.+.+..+.. ..
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~--------~~~~~~l~~L~~L~L~~N~l~~l~~----~~ 100 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP--------TGVFDKLTQLTQLDLNDNHLKSIPR----GA 100 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--------TTTTTTCTTCCEEECCSSCCCCCCT----TT
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC--------hhHhCCcchhhEEECCCCccceeCH----HH
Confidence 4566666665554332 23566777777777655432210 1235677888888888776544322 13
Q ss_pred cccccccceEEEEeeccCC---cHHHHHHHHhhCC
Q 043655 363 LHTFTNLKSLELHTGFNKH---NVQGLACLFRSSP 394 (512)
Q Consensus 363 ~~~~~~L~~L~L~~~~~~~---~~~~l~~~L~~cp 394 (512)
+..+++|++|+|....-.. +...+..+++.-+
T Consensus 101 ~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~ 135 (174)
T 2r9u_A 101 FDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHT 135 (174)
T ss_dssp TTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHCG
T ss_pred hccccCCCEEEeCCCCcccccccHHHHHHHHHhcc
Confidence 4567889999887643222 3455666665444
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=88.72 E-value=0.16 Score=46.87 Aligned_cols=60 Identities=27% Similarity=0.300 Sum_probs=34.0
Q ss_pred cCcccceEEeeeEEeeCccchhhhhcCCCCcccceecccccc--ccchhccccc--ccceeeecccc
Q 043655 188 GFRSLHTLSLSLVILFNQPCLLDLFTDSSFPHLKKLDLDACY--GLKQLKVGCR--ALEDLTLDNCI 250 (512)
Q Consensus 188 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l~~l~~~cp--~Le~L~l~~c~ 250 (512)
.+++|++|+|+++.+.+-..+..++. .+|+|+.|+|.++. ++..+ .... .|++|.|.++.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~--~l~~L~~L~Ls~N~i~~~~~l-~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQ--KAPNLKILNLSGNELKSEREL-DKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHH--HSTTCCEEECTTSCCCSGGGG-GGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCccchhHHh--hCCCCCEEECCCCccCCchhh-hhcccCCcceEEccCCc
Confidence 47788888888777766444433332 56777777776654 22111 1111 56666665554
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=87.99 E-value=0.25 Score=47.48 Aligned_cols=79 Identities=16% Similarity=0.074 Sum_probs=51.9
Q ss_pred ccCcccceEEeee-EEeeCccchhhhhcCCCCcccceecccccc--cc-chhcccccccceeeeccccCcccee---Eec
Q 043655 187 GGFRSLHTLSLSL-VILFNQPCLLDLFTDSSFPHLKKLDLDACY--GL-KQLKVGCRALEDLTLDNCIQLCGLD---IFG 259 (512)
Q Consensus 187 ~~~~~L~~L~L~~-~~~~~~~~l~~l~~~~~~p~L~~L~L~~~~--~l-~~l~~~cp~Le~L~l~~c~~l~~~~---v~~ 259 (512)
..+++|++|+|++ +.+..-.. ..+ ..+++|+.|+|.++. ++ ...+..+++|+.|+|.++.. ..+. +..
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~--~~~--~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~ 102 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLEL--RDL--RGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL-ESLSWKTVQG 102 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECG--GGS--CSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC-SCCCSTTTCS
T ss_pred CCCCCeeEEEccCCCCCCCcCh--hHh--ccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc-ceeCHHHccc
Confidence 4678999999985 77654211 111 478999999999885 22 23556789999999999753 2221 111
Q ss_pred cCcceEEEeee
Q 043655 260 TKLERLRVASC 270 (512)
Q Consensus 260 ~~L~~L~l~~c 270 (512)
..|+.|.+.+.
T Consensus 103 ~~L~~l~l~~N 113 (347)
T 2ifg_A 103 LSLQELVLSGN 113 (347)
T ss_dssp CCCCEEECCSS
T ss_pred CCceEEEeeCC
Confidence 23777776653
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=84.81 E-value=0.69 Score=45.26 Aligned_cols=119 Identities=13% Similarity=0.177 Sum_probs=62.1
Q ss_pred ccCCccEEEEecccCccccCCCccccccCcccceEEeee-EEeeCccchhhhhcCCCCcccceeccc-ccccc-chhccc
Q 043655 161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSL-VILFNQPCLLDLFTDSSFPHLKKLDLD-ACYGL-KQLKVG 237 (512)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-~~~~~~~~l~~l~~~~~~p~L~~L~L~-~~~~l-~~l~~~ 237 (512)
.|..|+.+.+... ...+... ....+++|+.+.+.. +.-.++..| .+|.+|+++.|- ++..+ ...+.+
T Consensus 263 ~c~~L~~i~lp~~--~~~I~~~--aF~~c~~L~~i~l~~~i~~I~~~aF------~~c~~L~~i~lp~~v~~I~~~aF~~ 332 (394)
T 4gt6_A 263 SCAYLASVKMPDS--VVSIGTG--AFMNCPALQDIEFSSRITELPESVF------AGCISLKSIDIPEGITQILDDAFAG 332 (394)
T ss_dssp TCSSCCEEECCTT--CCEECTT--TTTTCTTCCEEECCTTCCEECTTTT------TTCTTCCEEECCTTCCEECTTTTTT
T ss_pred ecccccEEecccc--cceecCc--ccccccccccccCCCcccccCceee------cCCCCcCEEEeCCcccEehHhHhhC
Confidence 5788888887652 2233322 234678888887742 222222222 478899998884 34433 245668
Q ss_pred ccccceeeeccc-cCccceeEe-ccCcceEEEeeeccccCCCceEEEeCCCcceEEee
Q 043655 238 CRALEDLTLDNC-IQLCGLDIF-GTKLERLRVASCFDAYCDKSWVKIDASKLKVLNWE 293 (512)
Q Consensus 238 cp~Le~L~l~~c-~~l~~~~v~-~~~L~~L~l~~c~~~~~~~~~~~i~~p~L~~L~~~ 293 (512)
|.+|+.+.|-.. ..+..-... +.+|+.+.+.+....... ...+.+|+.+.+.
T Consensus 333 C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~~~----~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 333 CEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSRSQWNA----ISTDSGLQNLPVA 386 (394)
T ss_dssp CTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCHHHHHT----CBCCCCC------
T ss_pred CCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCceeehhh----hhccCCCCEEEeC
Confidence 888988888532 112221221 367888887664221110 1234567766554
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=77.52 E-value=1.5 Score=42.82 Aligned_cols=104 Identities=16% Similarity=0.237 Sum_probs=59.9
Q ss_pred CCccee-ccCCccEEEEecccCccccCCCccccccCcccceEEeee-EEeeCccchhhhhcCCCCcccceeccc-ccccc
Q 043655 155 LPRCVI-TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSL-VILFNQPCLLDLFTDSSFPHLKKLDLD-ACYGL 231 (512)
Q Consensus 155 lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-~~~~~~~~l~~l~~~~~~p~L~~L~L~-~~~~l 231 (512)
++...| .|..|+.+.+... ...++... ..+|.+|+++.|.. +...++..| .+|.+|+.+.|- ++..+
T Consensus 279 I~~~aF~~c~~L~~i~l~~~--i~~I~~~a--F~~c~~L~~i~lp~~v~~I~~~aF------~~C~~L~~i~ip~sv~~I 348 (394)
T 4gt6_A 279 IGTGAFMNCPALQDIEFSSR--ITELPESV--FAGCISLKSIDIPEGITQILDDAF------AGCEQLERIAIPSSVTKI 348 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT--CCEECTTT--TTTCTTCCEEECCTTCCEECTTTT------TTCTTCCEEEECTTCCBC
T ss_pred ecCcccccccccccccCCCc--ccccCcee--ecCCCCcCEEEeCCcccEehHhHh------hCCCCCCEEEECcccCEE
Confidence 333333 6899999998762 22344332 35788999998853 333333333 589999999994 44444
Q ss_pred -chhcccccccceeeeccccCccceeEeccCcceEEEe
Q 043655 232 -KQLKVGCRALEDLTLDNCIQLCGLDIFGTKLERLRVA 268 (512)
Q Consensus 232 -~~l~~~cp~Le~L~l~~c~~l~~~~v~~~~L~~L~l~ 268 (512)
...+.+|++|+.+.+.+....-..-.....|+.+.+.
T Consensus 349 ~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 349 PESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVA 386 (394)
T ss_dssp CGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC------
T ss_pred hHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeC
Confidence 3456789999999988753211111122456666553
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=76.14 E-value=0.76 Score=40.09 Aligned_cols=95 Identities=7% Similarity=0.049 Sum_probs=56.6
Q ss_pred CcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeecc-CCc-
Q 043655 305 NLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFN-KHN- 382 (512)
Q Consensus 305 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~- 382 (512)
.-..|+.+++..+...+.. -..+...|+.-..|++|+|+.+.+.........+.+..-..|++|.|..+.. ...
T Consensus 68 ~N~~L~~L~L~~n~igd~g----a~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~ 143 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSE----ARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN 143 (197)
T ss_dssp TCSCCCEEECTTSCCBHHH----HTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred hCCCcCEEEccCCCCChHH----HHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCH
Confidence 3456677777655443321 2346667777788999998876643222111112333445689998864322 212
Q ss_pred --HHHHHHHHhhCCCCcEEEEEe
Q 043655 383 --VQGLACLFRSSPSIHTLILKI 403 (512)
Q Consensus 383 --~~~l~~~L~~cp~Le~L~l~~ 403 (512)
...+...|+.-+.|.+|.+..
T Consensus 144 ~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 144 QVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHHHHhCCCcCeEeccC
Confidence 235778899999999988864
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=70.25 E-value=2.8 Score=40.78 Aligned_cols=79 Identities=16% Similarity=0.165 Sum_probs=51.8
Q ss_pred ccCCccEEEEecccCccccCCCccccccCcccceEEeee-EEeeCccchhhhhcCCCCcccceecccc-cccc-chhccc
Q 043655 161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSL-VILFNQPCLLDLFTDSSFPHLKKLDLDA-CYGL-KQLKVG 237 (512)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-~~~~~~~~l~~l~~~~~~p~L~~L~L~~-~~~l-~~l~~~ 237 (512)
.|.+|+.+.+... .-.+... ...+|.+|+++.|.. +...+...| .+|.+|+.++|.. +..+ ...+.+
T Consensus 295 ~~~~L~~i~l~~~--i~~I~~~--aF~~c~~L~~i~lp~~v~~I~~~aF------~~c~~L~~i~lp~~l~~I~~~aF~~ 364 (394)
T 4fs7_A 295 GCSSLTEVKLLDS--VKFIGEE--AFESCTSLVSIDLPYLVEEIGKRSF------RGCTSLSNINFPLSLRKIGANAFQG 364 (394)
T ss_dssp TCTTCCEEEECTT--CCEECTT--TTTTCTTCCEECCCTTCCEECTTTT------TTCTTCCEECCCTTCCEECTTTBTT
T ss_pred ccccccccccccc--cceechh--hhcCCCCCCEEEeCCcccEEhHHhc------cCCCCCCEEEECccccEehHHHhhC
Confidence 6899999998762 1233332 234688999998843 222333333 5899999999953 3333 245678
Q ss_pred ccccceeeeccc
Q 043655 238 CRALEDLTLDNC 249 (512)
Q Consensus 238 cp~Le~L~l~~c 249 (512)
|++|+.+.+...
T Consensus 365 C~~L~~i~lp~~ 376 (394)
T 4fs7_A 365 CINLKKVELPKR 376 (394)
T ss_dssp CTTCCEEEEEGG
T ss_pred CCCCCEEEECCC
Confidence 999999988653
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=61.50 E-value=9.5 Score=36.63 Aligned_cols=78 Identities=17% Similarity=0.147 Sum_probs=45.8
Q ss_pred eccCCccEEEEecccCccccCCCccccccCcccceEEeeeE-EeeCccchhhhhcCCCCcccceeccccc--ccc-chhc
Q 043655 160 ITSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSLV-ILFNQPCLLDLFTDSSFPHLKKLDLDAC--YGL-KQLK 235 (512)
Q Consensus 160 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~l~~l~~~~~~p~L~~L~L~~~--~~l-~~l~ 235 (512)
+.|..|+.+.+..+ .-.+... ....+.+|+.+.+... ...+...+ .+|++|+++.+.+. ..+ ...+
T Consensus 237 ~~~~~L~~i~lp~~--v~~I~~~--aF~~~~~l~~i~l~~~i~~i~~~aF------~~c~~L~~i~l~~~~i~~I~~~aF 306 (379)
T 4h09_A 237 YGMKALDEIAIPKN--VTSIGSF--LLQNCTALKTLNFYAKVKTVPYLLC------SGCSNLTKVVMDNSAIETLEPRVF 306 (379)
T ss_dssp TTCSSCCEEEECTT--CCEECTT--TTTTCTTCCEEEECCCCSEECTTTT------TTCTTCCEEEECCTTCCEECTTTT
T ss_pred cCCccceEEEcCCC--ccEeCcc--ccceeehhccccccccceecccccc------ccccccccccccccccceehhhhh
Confidence 35788888888652 1122221 2345778888777431 11112122 47888888888643 333 3456
Q ss_pred ccccccceeeec
Q 043655 236 VGCRALEDLTLD 247 (512)
Q Consensus 236 ~~cp~Le~L~l~ 247 (512)
.+|.+|+.+.|-
T Consensus 307 ~~c~~L~~i~lp 318 (379)
T 4h09_A 307 MDCVKLSSVTLP 318 (379)
T ss_dssp TTCTTCCEEECC
T ss_pred cCCCCCCEEEcC
Confidence 678888888874
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=50.55 E-value=7.7 Score=33.62 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=52.9
Q ss_pred cCcccceeeEEeeEEcccchhHHHHhHHHHHhhcCCcccEeeecchhhhhhcccccccccccccccceEEEEeeccC-Cc
Q 043655 304 ENLASLHEASVGFILLHEDLTSAKLQSVSNFLSGLSHARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFNK-HN 382 (512)
Q Consensus 304 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~ 382 (512)
.+-+.|+++++......++. ....+...|+.-..|+.|+|..+.+....-......+..-..|++|+|+.+.-. ..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~---ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKE---RIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHH---HHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred hcCCCccEEECCCCCCCCHH---HHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 34567777777543111222 123466667777788888887765422211111112224457888888754322 22
Q ss_pred HHHHHHHHhhCCCCcEEEEE
Q 043655 383 VQGLACLFRSSPSIHTLILK 402 (512)
Q Consensus 383 ~~~l~~~L~~cp~Le~L~l~ 402 (512)
...+...|+.-+.|+.|.|.
T Consensus 115 a~ala~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECC
T ss_pred HHHHHHHHhhCCceeEEECC
Confidence 34455566666778888775
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=32.76 E-value=57 Score=30.95 Aligned_cols=79 Identities=22% Similarity=0.274 Sum_probs=48.2
Q ss_pred ccCCccEEEEecccCccccCCCccccccCcccceEEeee-EEeeCccchhhhhcCCCCcccceeccccc-ccc-chhccc
Q 043655 161 TSDSLRVFKLRSRYRGFRLPPSSVVAGGFRSLHTLSLSL-VILFNQPCLLDLFTDSSFPHLKKLDLDAC-YGL-KQLKVG 237 (512)
Q Consensus 161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-~~~~~~~~l~~l~~~~~~p~L~~L~L~~~-~~l-~~l~~~ 237 (512)
.+.+|+.+.+... ...+... ...++..|+.+.+.. +...+...+ .+|.+|+.+.+... ..+ ...+.+
T Consensus 215 ~~~~l~~i~~~~~--~~~i~~~--~f~~~~~L~~i~lp~~v~~I~~~aF------~~~~~l~~i~l~~~i~~i~~~aF~~ 284 (379)
T 4h09_A 215 YGKNLKKITITSG--VTTLGDG--AFYGMKALDEIAIPKNVTSIGSFLL------QNCTALKTLNFYAKVKTVPYLLCSG 284 (379)
T ss_dssp TCSSCSEEECCTT--CCEECTT--TTTTCSSCCEEEECTTCCEECTTTT------TTCTTCCEEEECCCCSEECTTTTTT
T ss_pred cccccceeeeccc--eeEEccc--cccCCccceEEEcCCCccEeCcccc------ceeehhccccccccceecccccccc
Confidence 5778888887652 1222222 124678898888743 222222222 47999999998542 222 245678
Q ss_pred ccccceeeeccc
Q 043655 238 CRALEDLTLDNC 249 (512)
Q Consensus 238 cp~Le~L~l~~c 249 (512)
|++|+.+.+.+.
T Consensus 285 c~~L~~i~l~~~ 296 (379)
T 4h09_A 285 CSNLTKVVMDNS 296 (379)
T ss_dssp CTTCCEEEECCT
T ss_pred cccccccccccc
Confidence 999999998654
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=31.48 E-value=39 Score=26.71 Aligned_cols=9 Identities=11% Similarity=0.062 Sum_probs=5.0
Q ss_pred CccEEEEec
Q 043655 164 SLRVFKLRS 172 (512)
Q Consensus 164 ~L~~L~L~~ 172 (512)
+|+.|+|++
T Consensus 32 ~l~~L~Ls~ 40 (130)
T 3rfe_A 32 DTTELVLTG 40 (130)
T ss_dssp TCSEEECTT
T ss_pred CCCEEECCC
Confidence 455555555
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=24.43 E-value=48 Score=26.12 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=33.6
Q ss_pred cccEeeecchhhhhhcccccccccccccccceEEEEeecc--CCcHHHHHHHHhhCC
Q 043655 340 HARSLTLESPCIEILSNRNYFTNLHTFTNLKSLELHTGFN--KHNVQGLACLFRSSP 394 (512)
Q Consensus 340 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~--~~~~~~l~~~L~~cp 394 (512)
+++.|+|+.+.+..+... .+..+++|+.|.|..+.- ..+..++..+++.-+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~ 84 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPG----LLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRP 84 (130)
T ss_dssp TCSEEECTTSCCSSCCTT----TGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSS
T ss_pred CCCEEECCCCcCCccChh----hhhhccccCEEEecCCCeeccCccHHHHHHHHhCc
Confidence 477888887776555432 344677899999886543 345677777777554
No 171
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=22.62 E-value=32 Score=26.04 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=19.6
Q ss_pred ccceEEEecccCccchHHHHHHHHHhccCCccCCCceeee
Q 043655 472 LQEMTLCTGHCNYRDSLRRQKVRSQMMGFSWASSNARIAF 511 (512)
Q Consensus 472 L~~m~i~~~~~~~~~~~~~~~~~~~l~~~~~as~~~~v~~ 511 (512)
|++++|.+.+.++......+=+...+-.+.+..|+++|.+
T Consensus 19 lk~l~~~yc~~~~sS~G~R~Fl~~~l~~~k~~NP~v~i~v 58 (102)
T 1s3a_A 19 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILI 58 (102)
T ss_dssp EEEEEEECCSSSCCCHHHHHHHHHTHHHHHHHSTTCCEEE
T ss_pred eeEEEEEEcCCCCCchhHHHHHHHhhHHHHHHCCCceEEE
Confidence 6666666654433333333333344444555566655543
Done!