BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043659
         (112 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P35930|POL1_RCMV RNA1 polyprotein OS=Red clover mottle virus PE=3 SV=1
          Length = 1864

 Score = 30.4 bits (67), Expect = 3.1,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 26/112 (23%)

Query: 6    GLLLVVNIATLARVDGAGECGTSSPDDEAMKLSP---CATAPQDEKV----PVSAGCRRN 58
            G +++ N+    ++ G    G  +    A  L P   CA A   EK     P+       
Sbjct: 1110 GSMIITNVGGKTKIVGIHVAGRDNKIGMASLLPPLLPCAQAQGAEKYFNFYPIEYDAAEG 1169

Query: 59   VQRIGQNPNCLCAVLLSDTAKLSGVKPQVAITIPKRCNITKLPADYVCG-PC 109
            + R+G+                  +KP++ I +PK+ ++ K P ++  G PC
Sbjct: 1170 IARVGE------------------LKPKLYIPLPKKTSLVKTPEEWHLGTPC 1203


>sp|Q6GZQ1|074L_FRG3G Uncharacterized protein 074L OS=Frog virus 3 (isolate Goorha)
           GN=FV3-074L PE=4 SV=1
          Length = 370

 Score = 30.0 bits (66), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 18  RVD-GAGECGTSSPDDEAMKLSPCATAPQDEKVPVSAGCRRNV 59
           R+D  AG C    P     +   C TA   E++ VSAG RRNV
Sbjct: 222 RLDMSAGGCPNVLPFRPETRHHDCTTASSGERLEVSAGGRRNV 264


>sp|Q9LLR7|NLTP3_ARATH Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana
           GN=LTP3 PE=3 SV=1
          Length = 115

 Score = 29.6 bits (65), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 9   LVVNIATLARVDGAGECGTSSPDDEAMKLSPCATA-PQDEKVPVS--AGCR--RNVQRIG 63
           LV+ +  +A VD A  CGT      A  L+PCAT   +   VP S  AG +   ++ +  
Sbjct: 11  LVLTVCIVASVDAAISCGT-----VAGSLAPCATYLSKGGLVPPSCCAGVKTLNSMAKTT 65

Query: 64  QNPNCLCAVLLSDTAKLSGVKPQVAITIPKRCNIT 98
            +    C  + S    +SG+ P +A  +P +C ++
Sbjct: 66  PDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVS 100


>sp|Q6C619|NPL4_YARLI Nuclear protein localization protein 4 OS=Yarrowia lipolytica
           (strain CLIB 122 / E 150) GN=NPL4 PE=3 SV=2
          Length = 563

 Score = 28.9 bits (63), Expect = 9.4,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 41  ATAPQDEKVPVSAGCRRNVQRIGQNPNCLCAVLLSDTAKLSGVKPQVAITIPK------R 94
           AT+P  ++ P S    + VQ++G N   +  V  +D+A  + V+   A T P+      R
Sbjct: 44  ATSPTGKQEPASRLLGKTVQKLGLNHGDMLFVSYTDSAPRAAVEAVTAETAPQMTAAHIR 103

Query: 95  CNITKLPAD 103
               +LP D
Sbjct: 104 DATKQLPVD 112


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.137    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,540,086
Number of Sequences: 539616
Number of extensions: 1493646
Number of successful extensions: 2927
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2919
Number of HSP's gapped (non-prelim): 18
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)