Your job contains 1 sequence.
>043662
MSYGVVGLPSPLYSNGLLPSTNKQGVGVVGLEGTNNTVKPPTDDSFPGFKWRLVIAYDGT
RYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFITPFSY
DGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYAY
HSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGALLQLEVE
GSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEVKY
NEEHLRLPAACPLSSFGRHHSVRKCKLPFY
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 043662
(330 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2077552 - symbol:AT3G06950 species:3702 "Arabi... 1150 1.0e-116 1
TIGR_CMR|GSU_2877 - symbol:GSU_2877 "tRNA pseudouridine s... 402 1.9e-37 1
TIGR_CMR|CHY_2276 - symbol:CHY_2276 "tRNA pseudouridine s... 401 2.4e-37 1
TIGR_CMR|CBU_0892 - symbol:CBU_0892 "tRNA pseudouridine s... 375 1.3e-34 1
UNIPROTKB|P07649 - symbol:truA "tRNA pseudouridine syntha... 358 8.5e-33 1
UNIPROTKB|Q9KTA4 - symbol:truA "tRNA pseudouridine syntha... 352 3.7e-32 1
TIGR_CMR|ECH_0622 - symbol:ECH_0622 "tRNA pseudouridine s... 352 3.7e-32 1
TIGR_CMR|VC_0999 - symbol:VC_0999 "tRNA pseudouridine syn... 352 3.7e-32 1
TIGR_CMR|DET_0504 - symbol:DET_0504 "tRNA pseudouridine s... 336 1.8e-30 1
TIGR_CMR|APH_0502 - symbol:APH_0502 "tRNA pseudouridine s... 330 7.9e-30 1
TIGR_CMR|NSE_0020 - symbol:NSE_0020 "tRNA pseudouridine s... 289 1.8e-25 1
TIGR_CMR|SPO_3143 - symbol:SPO_3143 "tRNA pseudouridine s... 286 3.6e-25 1
UNIPROTKB|P65846 - symbol:truA "tRNA pseudouridine syntha... 278 2.6e-24 1
UNIPROTKB|E1BUI0 - symbol:PUSL1 "tRNA pseudouridine synth... 261 1.6e-22 1
CGD|CAL0000624 - symbol:orf19.6297 species:5476 "Candida ... 223 2.6e-16 1
POMBASE|SPAC25B8.05 - symbol:SPAC25B8.05 "tRNA-pseudourid... 220 5.0e-16 1
DICTYBASE|DDB_G0283061 - symbol:DDB_G0283061 "tRNA pseudo... 173 8.3e-16 2
TIGR_CMR|CJE_0914 - symbol:CJE_0914 "tRNA pseudouridine s... 194 4.1e-15 1
GENEDB_PFALCIPARUM|PFE0815w - symbol:PFE0815w "hypothetic... 126 1.6e-14 3
UNIPROTKB|Q8I3U5 - symbol:PFE0815w "tRNA pseudouridine sy... 126 1.6e-14 3
UNIPROTKB|F1P3X5 - symbol:PUS3 "tRNA pseudouridine syntha... 167 1.1e-13 2
TAIR|locus:2024397 - symbol:AT1G09800 species:3702 "Arabi... 169 1.2e-13 2
RGD|1559560 - symbol:Pusl1 "pseudouridylate synthase-like... 148 1.2e-13 2
WB|WBGene00006473 - symbol:tag-124 species:6239 "Caenorha... 198 1.9e-13 1
UNIPROTKB|Q8N0Z8 - symbol:PUSL1 "tRNA pseudouridine synth... 192 2.9e-13 1
MGI|MGI:3047787 - symbol:Pusl1 "pseudouridylate synthase-... 190 3.9e-13 1
UNIPROTKB|F1RJE9 - symbol:PUSL1 "tRNA pseudouridine synth... 190 5.1e-13 1
UNIPROTKB|F1S759 - symbol:LOC100739830 "tRNA pseudouridin... 190 2.6e-12 1
UNIPROTKB|F1RVF1 - symbol:LOC100739830 "tRNA pseudouridin... 189 3.4e-12 1
UNIPROTKB|A6QP68 - symbol:PUSL1 "tRNA pseudouridine synth... 181 8.1e-12 1
SGD|S000001895 - symbol:DEG1 "tRNA:pseudouridine synthase... 185 8.3e-12 1
UNIPROTKB|F1PXJ5 - symbol:PUSL1 "tRNA pseudouridine synth... 180 9.5e-12 1
UNIPROTKB|J9P592 - symbol:PUSL1 "tRNA pseudouridine synth... 180 9.8e-12 1
DICTYBASE|DDB_G0288909 - symbol:pus3 "tRNA pseudouridylat... 159 6.5e-11 2
RGD|1310757 - symbol:Pus3 "pseudouridylate synthase 3" sp... 177 8.3e-11 1
UNIPROTKB|Q9BZE2 - symbol:PUS3 "tRNA pseudouridine(38/39)... 177 8.4e-11 1
UNIPROTKB|E2RGS6 - symbol:PUS3 "tRNA pseudouridine syntha... 176 1.1e-10 1
MGI|MGI:1914299 - symbol:Pus3 "pseudouridine synthase 3" ... 174 1.9e-10 1
UNIPROTKB|F1LXZ7 - symbol:Pusl1 "tRNA pseudouridine synth... 157 2.4e-10 1
UNIPROTKB|F1N5P3 - symbol:PUS3 "tRNA pseudouridine syntha... 172 3.1e-10 1
UNIPROTKB|Q3SX07 - symbol:PUS3 "tRNA pseudouridine(38/39)... 172 3.1e-10 1
UNIPROTKB|J3KTG4 - symbol:PUSL1 "tRNA pseudouridine synth... 148 5.9e-10 1
TAIR|locus:2009021 - symbol:AT1G34150 species:3702 "Arabi... 166 1.3e-09 1
UNIPROTKB|G4MKS9 - symbol:MGG_16154 "tRNA-pseudouridine s... 97 1.8e-08 3
UNIPROTKB|F1RFR2 - symbol:PUS1 "tRNA pseudouridine syntha... 153 3.7e-08 1
FB|FBgn0038811 - symbol:CG4159 species:7227 "Drosophila m... 153 3.9e-08 1
SGD|S000003031 - symbol:PUS2 "Mitochondrial tRNA:pseudour... 112 4.7e-08 2
POMBASE|SPBC887.11 - symbol:pus2 "tRNA pseudouridine synt... 106 7.8e-08 2
UNIPROTKB|J9NVH5 - symbol:PUS1 "tRNA pseudouridine syntha... 147 1.5e-07 1
UNIPROTKB|E2QW32 - symbol:PUS1 "tRNA pseudouridine syntha... 147 1.8e-07 1
ASPGD|ASPL0000001573 - symbol:AN6165 species:162425 "Emer... 121 5.7e-07 2
FB|FBgn0083976 - symbol:CG34140 species:7227 "Drosophila ... 89 5.8e-07 3
DICTYBASE|DDB_G0290987 - symbol:pus1 "tRNA pseudouridylat... 124 5.9e-07 3
UNIPROTKB|E1BDL3 - symbol:PUS1 "tRNA pseudouridine syntha... 141 8.4e-07 1
UNIPROTKB|G8JLB3 - symbol:PUS1 "tRNA pseudouridine syntha... 140 8.8e-07 1
UNIPROTKB|Q9Y606 - symbol:PUS1 "tRNA pseudouridine syntha... 140 1.1e-06 1
ZFIN|ZDB-GENE-030131-9433 - symbol:pus3 "pseudouridylate ... 140 1.2e-06 1
SGD|S000006133 - symbol:PUS1 "tRNA:pseudouridine synthase... 139 2.1e-06 1
UNIPROTKB|F1NZ90 - symbol:PUS1 "tRNA pseudouridine syntha... 137 2.1e-06 1
MGI|MGI:1929237 - symbol:Pus1 "pseudouridine synthase 1" ... 133 6.4e-06 1
RGD|1311871 - symbol:Pus1 "pseudouridylate synthase 1" sp... 133 6.4e-06 1
UNIPROTKB|Q4KM92 - symbol:Pus1 "tRNA pseudouridine syntha... 133 6.4e-06 1
ZFIN|ZDB-GENE-041212-26 - symbol:pus1 "pseudouridine synt... 127 2.9e-05 1
POMBASE|SPCC16C4.06c - symbol:SPCC16C4.06c "tRNA pseudour... 127 2.9e-05 1
ASPGD|ASPL0000040109 - symbol:AN3170 species:162425 "Emer... 109 6.9e-05 3
UNIPROTKB|F5H1S9 - symbol:PUS1 "tRNA pseudouridine syntha... 122 8.9e-05 1
TAIR|locus:2012898 - symbol:AT1G20370 species:3702 "Arabi... 89 0.00014 2
DICTYBASE|DDB_G0281619 - symbol:DDB_G0281619 "tRNA pseudo... 112 0.00014 2
POMBASE|SPCC126.03 - symbol:pus1 "tRNA pseudouridine synt... 122 0.00016 1
TAIR|locus:2065748 - symbol:AT2G30320 species:3702 "Arabi... 96 0.00025 2
>TAIR|locus:2077552 [details] [associations]
symbol:AT3G06950 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0006730
"one-carbon metabolic process" evidence=RCA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248673 OMA:GKSFLWE EMBL:BT029513
IPI:IPI00532571 RefSeq:NP_187351.2 UniGene:At.18751
UniGene:At.40432 ProteinModelPortal:A1A6J3 SMR:A1A6J3 STRING:A1A6J3
EnsemblPlants:AT3G06950.1 GeneID:819880 KEGG:ath:AT3G06950
TAIR:At3g06950 InParanoid:A1A6J3 PhylomeDB:A1A6J3
ProtClustDB:CLSN2690754 Genevestigator:A1A6J3 Uniprot:A1A6J3
Length = 323
Score = 1150 (409.9 bits), Expect = 1.0e-116, P = 1.0e-116
Identities = 220/331 (66%), Positives = 265/331 (80%)
Query: 1 MSYGVVGLPSPLYSNGLLPSTNKQGVGVVGLEGTNNTVKPPTDDSFPGFKWRLVIAYDGT 60
MS LP L++NG L S Q + + L N++VK DS +KWRLVIAYDGT
Sbjct: 1 MSCVTPALPPSLFTNGYLSSP--QNISMTNL---NSSVK--VSDS-GAYKWRLVIAYDGT 52
Query: 61 RYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFITPFSY 120
R+AGWQ+Q SPPTIQ ++EKALI++T+L R++L+L+GA RTD GVHAWGQVAHF+TPF+Y
Sbjct: 53 RFAGWQYQESPPTIQSMLEKALIQITELGRKELQLIGAGRTDAGVHAWGQVAHFVTPFNY 112
Query: 121 DGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYAY 180
L+S HAALNGLLP DIRVRE+SAAVPEFHARFSA SK+Y Y+IYND MDPFQRH+AY
Sbjct: 113 TSLDSFHAALNGLLPKDIRVRELSAAVPEFHARFSASSKVYRYQIYNDTFMDPFQRHWAY 172
Query: 181 HSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGALLQLEVE 240
H YKLN + MR+AA FVGKHDFSAF N R D + +P+K++ RFDVI+MG+LLQLEVE
Sbjct: 173 HCAYKLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKTISRFDVIQMGSLLQLEVE 232
Query: 241 GSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY-ALSAPPHGLCLVEVK 299
GSGFLYRQVRNMVALL+QIGKEA+ DIVP IL T+DR+ LAKY +L A PHGLCLV VK
Sbjct: 233 GSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTSLPASPHGLCLVSVK 292
Query: 300 YNEEHLRLPAACPLSSFGRHHSVRKCKLPFY 330
Y E+HL+LP CP++S GRHH++ KCKLPFY
Sbjct: 293 YKEDHLKLPLDCPVTSSGRHHTITKCKLPFY 323
>TIGR_CMR|GSU_2877 [details] [associations]
symbol:GSU_2877 "tRNA pseudouridine synthase A"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 ProtClustDB:PRK00021 HOGENOM:HOG000248673
OMA:TPFRNVH RefSeq:NP_953919.1 ProteinModelPortal:P60350
GeneID:2688667 KEGG:gsu:GSU2877 PATRIC:22028615
BioCyc:GSUL243231:GH27-2866-MONOMER Uniprot:P60350
Length = 244
Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
Identities = 95/249 (38%), Positives = 138/249 (55%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L++ YDGT YAGWQ Q + +IQ +VE AL R+ K E +RL + RTD GVHA G V
Sbjct: 5 KLILEYDGTNYAGWQLQPNGLSIQEVVEGALARLLK---EPVRLRASGRTDAGVHARGMV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T S L + LN LLPPDI VR A+P F+ RF+A K Y Y I+
Sbjct: 62 AAFDTDRSIP-LRAFSDGLNALLPPDIAVRSADEALPGFNPRFAATGKHYRYTIHRGERR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P R ++H LN MR+AA + G+ DF++F R ++ V ++ +
Sbjct: 121 SPLVRLQSWHVRGALNLAAMREAARHLTGERDFASFRTAGCAAR--TTIRRVDAVEISDD 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G +L ++V GSGFL VR MV L+++G+ + P+ V +++ + +APP
Sbjct: 179 GEMLTVDVHGSGFLRNMVRIMVGTLVEVGRGKLTPEHVAQMVVCPG---VVPAGPTAPPQ 235
Query: 292 GLCLVEVKY 300
GLCL +V++
Sbjct: 236 GLCLQKVRF 244
>TIGR_CMR|CHY_2276 [details] [associations]
symbol:CHY_2276 "tRNA pseudouridine synthase A"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006400 "tRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 HOGENOM:HOG000248673
OMA:TPFRNVH RefSeq:YP_361085.1 STRING:Q3A9U9 GeneID:3728226
KEGG:chy:CHY_2276 PATRIC:21277623
BioCyc:CHYD246194:GJCN-2275-MONOMER Uniprot:Q3A9U9
Length = 246
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 101/255 (39%), Positives = 140/255 (54%)
Query: 47 PGFKWRLVIAYDGTRYAGWQFQ-TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGV 105
P FK L IAYDGT +AG+Q Q +P TIQ I+E+ L ++ K E ++++GA RTD GV
Sbjct: 5 PNFK--LTIAYDGTNFAGFQKQKNTPQTIQGILEEKLHKILK---EPVKVIGAGRTDAGV 59
Query: 106 HAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKI 165
HA GQV +F P+ ++ I LN LP IRV E +FHAR+SA+ K Y Y +
Sbjct: 60 HALGQVVNFSAPWKAP-VDKIPEILNNTLPTAIRVLEAEIVPDDFHARYSARKKEYRYYL 118
Query: 166 YNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFR 225
Y PF YA+ KL+ + +A EY +G HDFS F + + NP+K++F
Sbjct: 119 YYGPP-SPFYERYAWALPQKLDREKVAKALEYLIGTHDFSGFGAAGSSGK--NPIKTMFE 175
Query: 226 FDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
E G L FLY+ R + L++IG P+ V +IL T ++K K
Sbjct: 176 ASYREDGFLGYFTFVADSFLYKMARILTGTLVEIGLNG-HPERVREILTTGNKKLAGK-- 232
Query: 286 LSAPPHGLCLVEVKY 300
+AP HGL LV+V Y
Sbjct: 233 -TAPAHGLFLVKVFY 246
>TIGR_CMR|CBU_0892 [details] [associations]
symbol:CBU_0892 "tRNA pseudouridine synthase A"
species:227377 "Coxiella burnetii RSA 493" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0016829 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 KO:K06173 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
HOGENOM:HOG000248672 ProtClustDB:PRK00021 OMA:TPFRNVH
RefSeq:YP_338281.1 ProteinModelPortal:Q4AAX9 SMR:Q4AAX9
GeneID:1208785 KEGG:cbu:CBU_0892 PATRIC:17930485
BioCyc:CBUR227377:GJ7S-885-MONOMER Uniprot:Q4AAX9
Length = 261
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 95/266 (35%), Positives = 140/266 (52%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I YDG+ Y GWQ Q + T+Q VEKAL V + + A RTD GVHA QVA
Sbjct: 6 LGIRYDGSAYHGWQVQEALKTVQGEVEKALSAVAN---HPVFVTCAGRTDAGVHASAQVA 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
HF T +Y + N LP DI + A +FHAR+SA ++ Y Y +YN +
Sbjct: 63 HFDTT-AYRSDHAWVFGANSNLPHDISILWAKAVEEDFHARYSAMARRYRYIVYNHEIRP 121
Query: 173 PFQRH-YAYHSVYK-LNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
R +H Y+ L+ M+ A+Y +G+HDFS+F R PV+ +F+ ++
Sbjct: 122 AILRKAIGWH--YRPLDEKRMQAGAQYLIGEHDFSSFQGAGCQSR--TPVRKIFQIEIYR 177
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+ ++ +EV+ + FL VRN+ +L+ IG PD +L +DR++ ++ PP
Sbjct: 178 IRRMVVIEVQANAFLLHMVRNIAGVLIAIGSGEKHPDWAQTVLKAKDRRQ---GGVTVPP 234
Query: 291 HGLCLVEVKYNEEHLRLPAACPLSSF 316
+GL LVEV Y + +LP PL F
Sbjct: 235 NGLYLVEVNY-PPNFKLPRM-PLGPF 258
>UNIPROTKB|P07649 [details] [associations]
symbol:truA "tRNA pseudouridine synthase I" species:83333
"Escherichia coli K-12" [GO:0000049 "tRNA binding" evidence=IDA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IMP]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IDA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:M68934
GO:GO:0000049 GO:GO:0009982 SUPFAM:SSF55120 EMBL:M15543 EMBL:X02743
GO:GO:0031119 BRENDA:5.4.99.12 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248672 ProtClustDB:PRK00021
EMBL:M15542 PIR:B23792 RefSeq:NP_416821.1 RefSeq:YP_490560.1
PDB:1DJ0 PDB:2NQP PDB:2NR0 PDB:2NRE PDBsum:1DJ0 PDBsum:2NQP
PDBsum:2NR0 PDBsum:2NRE ProteinModelPortal:P07649 SMR:P07649
DIP:DIP-11043N IntAct:P07649 MINT:MINT-1310146 PRIDE:P07649
EnsemblBacteria:EBESCT00000002191 EnsemblBacteria:EBESCT00000002192
EnsemblBacteria:EBESCT00000017099 GeneID:12932365 GeneID:946793
KEGG:ecj:Y75_p2284 KEGG:eco:b2318 PATRIC:32120007 EchoBASE:EB0449
EcoGene:EG10454 OMA:TPFRNVH BioCyc:EcoCyc:EG10454-MONOMER
BioCyc:ECOL316407:JW2315-MONOMER BioCyc:MetaCyc:EG10454-MONOMER
EvolutionaryTrace:P07649 Genevestigator:P07649 Uniprot:P07649
Length = 270
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 94/269 (34%), Positives = 141/269 (52%)
Query: 47 PGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVH 106
P +K L I YDG++Y GWQ Q ++Q +EKAL +V E + + A RTD GVH
Sbjct: 8 PVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN---EPITVFCAGRTDAGVH 64
Query: 107 AWGQVAHF-ITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKI 165
GQV HF T D ++ +N LP DI VR + +FHARFSA ++ Y Y I
Sbjct: 65 GTGQVVHFETTALRKDAAWTL--GVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYII 122
Query: 166 YNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFR 225
YN + H L+ M +AA+ +G++DF++F VQ R P ++V
Sbjct: 123 YNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSR--TPWRNVMH 180
Query: 226 FDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
+V G + ++++ + F++ VRN+V L+++G P + ++LA +DR LA A
Sbjct: 181 INVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRT-LA--A 237
Query: 286 LSAPPHGLCLVEVKYNEEH-LRLPAACPL 313
+A GL LV V Y + + L P PL
Sbjct: 238 ATAKAEGLYLVAVDYPDRYDLPKPPMGPL 266
>UNIPROTKB|Q9KTA4 [details] [associations]
symbol:truA "tRNA pseudouridine synthase A" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006400 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 ProtClustDB:PRK00021 PIR:A82253
RefSeq:NP_230645.1 ProteinModelPortal:Q9KTA4 SMR:Q9KTA4
DNASU:2614252 GeneID:2614252 KEGG:vch:VC0999 PATRIC:20081098
OMA:GKSFLWE Uniprot:Q9KTA4
Length = 264
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 92/256 (35%), Positives = 132/256 (51%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I YDGT Y GWQ Q ++Q +EKAL +K+ + + A RTD GVH GQV
Sbjct: 5 LGIEYDGTHYYGWQRQREVKSVQEALEKAL---SKIANHPVEVQCAGRTDAGVHGTGQVV 61
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
HF T + A N LP DI VR A EFHARFSA ++ Y Y IYN
Sbjct: 62 HFDTTAERQMVAWTMGA-NANLPKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVYRP 120
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
H +L+ M+QA +Y +G++DF++F V R +P ++V +V G
Sbjct: 121 GILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSR--SPWRNVMHLNVTRHG 178
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ ++++ + F++ VRN+ L+ +G+ P+ + +LA +DR LA A +A G
Sbjct: 179 RYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRT-LA--AATAKAEG 235
Query: 293 LCLVEVKYNEEHLRLP 308
L LV V Y H LP
Sbjct: 236 LYLVSVDY-PAHFGLP 250
>TIGR_CMR|ECH_0622 [details] [associations]
symbol:ECH_0622 "tRNA pseudouridine synthase A"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006400
"tRNA modification" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248672 ProtClustDB:PRK00021
RefSeq:YP_507432.1 ProteinModelPortal:Q2GGK1 STRING:Q2GGK1
GeneID:3927636 KEGG:ech:ECH_0622 PATRIC:20576696 OMA:YSINANR
BioCyc:ECHA205920:GJNR-624-MONOMER Uniprot:Q2GGK1
Length = 245
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 91/257 (35%), Positives = 140/257 (54%)
Query: 50 KWRLVIAYDGTRYAGWQFQT-SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
++++ I Y+G+ + GWQ Q S +IQ I+E A++ K ++ + A RTD GVHA
Sbjct: 2 RYKITIEYNGSNFIGWQKQKHSSNSIQEILENAIL---KFSQQHTTVYVAGRTDAGVHAL 58
Query: 109 GQVAHFITPFSYDGLESIHAALN-GLLPPDIRVREISAAVPEFHARFSAKSKIYHYKI-- 165
GQVAHF + D + A+N L+P I + + +FHARFSAK + Y YKI
Sbjct: 59 GQVAHFDLTTNLDTYV-VRNAINYHLIPHAIAILSVEKTDDKFHARFSAKKRHYLYKIIN 117
Query: 166 -YNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF 224
Y+ +D + R + H+ LN M QA EY G HDFS+F R+ + NP+K++
Sbjct: 118 RYSPLTID-YNRAWLIHN--PLNIENMIQAIEYIKGNHDFSSFR--ARHCQSKNPIKTID 172
Query: 225 RFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
+I + + + FL+ QVR +V L++ GK P+ + IL ++R Y
Sbjct: 173 DLKIIHNNQSINIHISAISFLHHQVRIIVGTLVECGKNNFSPEHIKNILKAKNRS----Y 228
Query: 285 A-LSAPPHGLCLVEVKY 300
A ++APP+GL V+V Y
Sbjct: 229 AGMTAPPYGLYFVKVDY 245
>TIGR_CMR|VC_0999 [details] [associations]
symbol:VC_0999 "tRNA pseudouridine synthase A" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006400 "tRNA modification"
evidence=ISS] [GO:0009982 "pseudouridine synthase activity"
evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006400 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 ProtClustDB:PRK00021 PIR:A82253
RefSeq:NP_230645.1 ProteinModelPortal:Q9KTA4 SMR:Q9KTA4
DNASU:2614252 GeneID:2614252 KEGG:vch:VC0999 PATRIC:20081098
OMA:GKSFLWE Uniprot:Q9KTA4
Length = 264
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 92/256 (35%), Positives = 132/256 (51%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I YDGT Y GWQ Q ++Q +EKAL +K+ + + A RTD GVH GQV
Sbjct: 5 LGIEYDGTHYYGWQRQREVKSVQEALEKAL---SKIANHPVEVQCAGRTDAGVHGTGQVV 61
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
HF T + A N LP DI VR A EFHARFSA ++ Y Y IYN
Sbjct: 62 HFDTTAERQMVAWTMGA-NANLPKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVYRP 120
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
H +L+ M+QA +Y +G++DF++F V R +P ++V +V G
Sbjct: 121 GILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSR--SPWRNVMHLNVTRHG 178
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ ++++ + F++ VRN+ L+ +G+ P+ + +LA +DR LA A +A G
Sbjct: 179 RYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRT-LA--AATAKAEG 235
Query: 293 LCLVEVKYNEEHLRLP 308
L LV V Y H LP
Sbjct: 236 LYLVSVDY-PAHFGLP 250
>TIGR_CMR|DET_0504 [details] [associations]
symbol:DET_0504 "tRNA pseudouridine synthase A"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0016829 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248673 OMA:YSINANR
RefSeq:YP_181248.1 ProteinModelPortal:Q3Z951 STRING:Q3Z951
GeneID:3230211 KEGG:det:DET0504 PATRIC:21608077
ProtClustDB:CLSK837466 BioCyc:DETH243164:GJNF-504-MONOMER
Uniprot:Q3Z951
Length = 248
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 96/255 (37%), Positives = 130/255 (50%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
LVI Y+GTRY+G+Q Q TIQ +E A IR KL E R+ G+ RTD GVHA QV
Sbjct: 3 LVIEYEGTRYSGFQVQDKGATIQGELETA-IR--KLTSEQTRVSGSGRTDAGVHAAYQVV 59
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+++ S GL+ I LN LPPDI V+E+ F R A S+ Y Y+I N
Sbjct: 60 SYLSESSL-GLDKIKGGLNFYLPPDIAVKEVHFVAESFDVRRRAISREYSYQILNSKTRS 118
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPV--KSVFRFDVIE 230
P R A+ YKL+ LM QA + G+HDF AF + L P K+V R +
Sbjct: 119 PLARLQAWQVPYKLDIKLMEQAFKMLEGEHDFIAFASS------LGPEIKKTVRRVNWTR 172
Query: 231 MGAL---LQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+G L +E + FL QVRN + L+++G+ + + + A + K +
Sbjct: 173 LGIREDRLIFNIEANSFLTHQVRNTIGTLVELGRGTMS---MSEFEALFEAKTPGLAGPA 229
Query: 288 APPHGLCLVEVKYNE 302
AP GL LV V Y E
Sbjct: 230 APACGLSLVRVNYRE 244
>TIGR_CMR|APH_0502 [details] [associations]
symbol:APH_0502 "tRNA pseudouridine synthase A"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006400 "tRNA
modification" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 RefSeq:YP_505097.1 ProteinModelPortal:Q2GKK4
STRING:Q2GKK4 GeneID:3931158 KEGG:aph:APH_0502 PATRIC:20949644
HOGENOM:HOG000248672 OMA:RHYRYRI ProtClustDB:PRK00021
BioCyc:APHA212042:GHPM-526-MONOMER Uniprot:Q2GKK4
Length = 246
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 85/253 (33%), Positives = 132/253 (52%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIR-VTKLEREDLRLVGASRTDTGVHAW 108
+++ V+ Y+GT + GWQ Q + V++++ R + + ++ + + A RTD GVHA
Sbjct: 2 RYKAVVEYEGTSFIGWQRQHG--VVGKSVQESIERSIKEFCQQSVIVYAAGRTDAGVHAT 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPD-IRVREISAAVPEFHARFSAKSKIYHYKIYN 167
GQV HF S + I ALN L + + + ++ EFHARFSAK + Y YKI N
Sbjct: 60 GQVVHFDLKVSREDYV-IKNALNHYLRNEKVSILQLERVDEEFHARFSAKKRHYTYKISN 118
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
+H +LN MR+AA Y VGKHDF++F ++ + + +K+V D
Sbjct: 119 REAPLCIDLMRMWHVPKRLNVENMREAASYIVGKHDFASFR--AKDCQSKSSIKTVDSID 176
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+I + + + FL++QVR V ++ G PP V +IL +DR A ++
Sbjct: 177 IIAAEEEININISAQSFLHKQVRITVGTFVECGMGLYPPAHVLEILEKKDR---AAAGIT 233
Query: 288 APPHGLCLVEVKY 300
AP HGL L V Y
Sbjct: 234 APAHGLYLTRVDY 246
>TIGR_CMR|NSE_0020 [details] [associations]
symbol:NSE_0020 "tRNA pseudouridine synthase A"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006400
"tRNA modification" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
GO:GO:0008033 EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248672 OMA:RHYRYRI
RefSeq:YP_505923.1 ProteinModelPortal:Q2GF33 STRING:Q2GF33
GeneID:3932291 KEGG:nse:NSE_0020 PATRIC:22680151
ProtClustDB:CLSK2528006 BioCyc:NSEN222891:GHFU-58-MONOMER
Uniprot:Q2GF33
Length = 243
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 84/253 (33%), Positives = 132/253 (52%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ ++ Y GT ++GWQ Q S P++Q +E L + L +E + + A RTD GVHA G
Sbjct: 2 RYKAIVEYVGTGFSGWQKQMSAPSVQEELESVL---SFLLKEKIAVNVAGRTDAGVHALG 58
Query: 110 QVAHFITPFS-YDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
QV HF S + ++A L I + +I F ARFSA + Y YKI N
Sbjct: 59 QVFHFDARESTLQPFQIVNAVNYHLKEKLIVLLKIEIVDETFDARFSAIRRHYQYKITNR 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
++ ++H LN L+R+ A+Y VGKHDF +F + + N ++++ R +V
Sbjct: 119 KTPLAVFKNRSWHVPQTLNLDLIREQAQYLVGKHDFQSFRSSKCGAS--NAIRTLDRLEV 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA-LS 287
+ G + FL+ QVR MV L+ I + V +IL+ ++R+ YA +
Sbjct: 177 EKNGEEMIFHASAKSFLHHQVRIMVGTLVAIASGKLMS--VTEILSKKNRR----YAGPT 230
Query: 288 APPHGLCLVEVKY 300
APP GL L++V Y
Sbjct: 231 APPCGLYLLKVDY 243
>TIGR_CMR|SPO_3143 [details] [associations]
symbol:SPO_3143 "tRNA pseudouridine synthase A"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248672 OMA:RHYRYRI
ProtClustDB:PRK00021 RefSeq:YP_168346.1 ProteinModelPortal:Q5LNR0
GeneID:3193303 KEGG:sil:SPO3143 PATRIC:23379731 Uniprot:Q5LNR0
Length = 262
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 81/258 (31%), Positives = 124/258 (48%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++ L + Y GT +AGWQ Q P++Q +E AL R LE + A RTD GVH G
Sbjct: 3 RYALKVEYLGTPFAGWQRQKDLPSVQGAIETALAR---LEPGPHTIAAAGRTDAGVHGLG 59
Query: 110 QVAHFITPFSYDGLESIHAALN-GLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
QVAH +D + ALN L P + + + ++HARFSA + Y +++
Sbjct: 60 QVAHCDLTRDWDPFR-LSEALNYHLKPQPVAITAAARVAEDWHARFSATERQYLFRLLMR 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSV--FRF 226
+ ++L+ M+ AA+ +G+HDF+ F + + +PVK++ R
Sbjct: 119 RAPATHDAGLVWQVGHRLDARAMQAAADLLLGRHDFTTFRS--SICQAASPVKTLDELRV 176
Query: 227 DVIEM--GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
+ +E G ++ V FL+ QVR+ V L ++G A P+ V L +DR A
Sbjct: 177 EAVESFSGPEIRFHVRARSFLHNQVRSFVGTLERVGAGAWAPEDVRSALEARDR---AAC 233
Query: 285 ALSAPPHGLCLVEVKYNE 302
PP GL L V Y E
Sbjct: 234 GPVCPPQGLYLARVGYPE 251
>UNIPROTKB|P65846 [details] [associations]
symbol:truA "tRNA pseudouridine synthase A" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 GO:GO:0040007 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR EMBL:BX842583
GO:GO:0003723 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
HOGENOM:HOG000248674 ProtClustDB:PRK00021 OMA:TPFRNVH PIR:D70565
RefSeq:NP_217972.2 RefSeq:NP_338087.1 ProteinModelPortal:P65846
SMR:P65846 EnsemblBacteria:EBMYCT00000002601
EnsemblBacteria:EBMYCT00000071399 GeneID:887590 GeneID:922954
KEGG:mtc:MT3562 KEGG:mtu:Rv3455c PATRIC:18129561
TubercuList:Rv3455c Uniprot:P65846
Length = 297
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 87/265 (32%), Positives = 125/265 (47%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
RL IAYDGT +AGW Q T+ ++ AL T + R +RL A RTD GVHA GQV
Sbjct: 25 RLDIAYDGTDFAGWAAQVGQRTVAGDLDAAL---TTIFRTPVRLRAAGRTDAGVHASGQV 81
Query: 112 AHFITPFSYDGLESI-----HAA----------LNGLLPPDIRVREISAAVPEFHARFSA 156
AH P D L + H L LP D+R+ +I+ A F ARFSA
Sbjct: 82 AHVDVPA--DALPNAYPRAGHVGDPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSA 139
Query: 157 KSKIYHYKIYNDAV-MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDR 215
+ Y Y++ ++P Q Y +L+ M A+ +G HDF+AF R+
Sbjct: 140 LRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDLMGLHDFAAFC---RHRE 196
Query: 216 LLNPVKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILAT 275
++ + R D G L+ V F + VR++V LL +G+ ++L
Sbjct: 197 GATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGEHRRATTWCRELLTA 256
Query: 276 QDRKELAKYALSAPPHGLCLVEVKY 300
R + +A+ AP HGL L++V Y
Sbjct: 257 TGRS--SDFAV-APAHGLTLIQVDY 278
>UNIPROTKB|E1BUI0 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 CTD:126789 OMA:WALPADC
GeneTree:ENSGT00510000048520 EMBL:AADN02040857 EMBL:AADN02040858
IPI:IPI00574950 RefSeq:XP_417580.2 UniGene:Gga.10892
Ensembl:ENSGALT00000002630 GeneID:419419 KEGG:gga:419419
NextBio:20822478 Uniprot:E1BUI0
Length = 291
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 87/287 (30%), Positives = 137/287 (47%)
Query: 47 PGFKWRLVIAYDGTRYAGWQFQTSPPT----IQCIVEKALIRVTKLEREDLRLVGASRTD 102
P ++ + Y GT+Y+G QTS +Q +EKA + + + +SRTD
Sbjct: 4 PKTRYLVFFQYWGTKYSG-VMQTSAEQSGIGVQNYLEKAAQNLKPVVPIKFHI--SSRTD 60
Query: 103 TGVHAWGQVAHFI---TPFSYDGLESIH-AALNGLLPPD-IRVREISAAVPEFHARFSAK 157
+GVHA AH P E + LN L P+ IR+ FHARFSA
Sbjct: 61 SGVHALCNSAHLDIQRAPGKPAFQERVLIGCLNHHLKPEPIRILSAYRVTNNFHARFSAL 120
Query: 158 SKIYHYKIY----NDAVMDPFQRH--YAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQ 211
S+ Y Y++ + + + F+R +A Y LN M+ AA++ +G HDFS F ++
Sbjct: 121 SRTYIYRLLMGCTHHSEIPVFERDLCWAPPGGY-LNVPAMQDAAQFLLGTHDFSTFCSLN 179
Query: 212 RNDRLLNPVKSVFRFDVIEMGALL------------QLEVEGSGFLYRQVRNMVALLLQI 259
+PVK++ + D+ L +L+ + FLYRQVR MV L+ +
Sbjct: 180 SETPFRSPVKTILQADIQPSSGFLSHHYEYRGLQFWELKFKSRSFLYRQVRRMVGALVAV 239
Query: 260 GKEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEVKYNEEHLR 306
G+ + P + ++L +D + +A+ AP GL L V+YNE L+
Sbjct: 240 GQGKLAPHHIKELLEMKDARAFPAFAM-APSSGLFLKSVEYNEADLQ 285
>CGD|CAL0000624 [details] [associations]
symbol:orf19.6297 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 CGD:CAL0000624 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 EMBL:AACQ01000212
EMBL:AACQ01000211 RefSeq:XP_711136.1 RefSeq:XP_711154.1
ProteinModelPortal:Q59N30 STRING:Q59N30 GeneID:3647251
GeneID:3647265 KEGG:cal:CaO19.13676 KEGG:cal:CaO19.6297
Uniprot:Q59N30
Length = 489
Score = 223 (83.6 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 86/294 (29%), Positives = 132/294 (44%)
Query: 30 GLEGTNNTVKPPTDDSFPGFKW-----RLV---IAYDGTRYAGWQFQTSP---PTIQCIV 78
G + ++KP F W R V AY G Y G Q P PT++ +
Sbjct: 103 GETSSQRSIKPVKKQKKKEFDWSKQNMRFVAFKFAYLGWNYNGLALQLEPTPLPTVEEVF 162
Query: 79 EKALIRVTKLER--EDLRLVGASRTDTGVHAWGQVAHF-----IT------PFSYDGLES 125
KAL +V ++ E+++ RTD GV A QV IT P +D LE
Sbjct: 163 LKALAKVKLIKEPIEEVKFSRCGRTDKGVSAMNQVISINVRSNITLENQSNP-EFDDLEI 221
Query: 126 IH-AALNGLLPPDIRVREISAAVP-EFHARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSV 183
+ + LN LP DI+V I P +F ARFS S+ HY+ Y +
Sbjct: 222 DYISVLNANLPSDIKVHSICLRPPPDFDARFSCLSR--HYR-------------YIFRK- 265
Query: 184 YKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGA-LLQLEVEGS 242
L+ LM Q A+ + G HDF F + + ++ N V+ +++ +I + +++GS
Sbjct: 266 QDLDIELMNQGAKLYQGIHDFRNFCKLDGSKQITNFVREIYQSQIIHLHQDYYCFDLKGS 325
Query: 243 GFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLV 296
FL+ QVR MVA+L IG+ P I+ ++ T +Y ++ H + LV
Sbjct: 326 AFLWHQVRCMVAILFTIGQSLESPSIITDLMDTNKFPTKPQYEMA---HDIPLV 376
>POMBASE|SPAC25B8.05 [details] [associations]
symbol:SPAC25B8.05 "tRNA-pseudouridine synthase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0009982 "pseudouridine synthase activity"
evidence=ISO] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=ISO]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PomBase:SPAC25B8.05 GO:GO:0005829 GO:GO:0005634 EMBL:CU329670
GO:GO:0003723 GO:GO:0016829 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 KO:K01855 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
HOGENOM:HOG000199032 OMA:KFSRCGR OrthoDB:EOG46T69C PIR:T50192
RefSeq:NP_594465.1 ProteinModelPortal:Q9UTB3 STRING:Q9UTB3
EnsemblFungi:SPAC25B8.05.1 GeneID:2541578 KEGG:spo:SPAC25B8.05
NextBio:20802672 Uniprot:Q9UTB3
Length = 450
Score = 220 (82.5 bits), Expect = 5.0e-16, P = 5.0e-16
Identities = 83/279 (29%), Positives = 128/279 (45%)
Query: 46 FPGFKWRLVIAYDGTRYAGWQFQTSP---PTIQCIVEKALIRVTKL-EREDLRLVGASRT 101
F FK+ AY G Y G +Q P PT++ V +AL+R + + RT
Sbjct: 93 FVAFKF----AYCGWNYNGLAYQLEPTPLPTVEGKVFEALLRAHLITDPSSCSFSRCGRT 148
Query: 102 DTGVHAWGQVAHFITPFSYDGLESIHA-ALNGLLPPDIRVREISAAVPE-FHARFSAKSK 159
D GV A GQV S + I+ LN LLP DIR+ A PE F ARFS K +
Sbjct: 149 DKGVSAMGQVISLNVRHS-ERRPIIYCDVLNRLLPADIRITGY-AFPPEGFDARFSCKQR 206
Query: 160 IYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNP 219
HYK F + Y S L+ M +AA ++G+HDF F + + ++ N
Sbjct: 207 --HYKYL-------FTKDYPGGS---LDIDRMNEAAALYLGEHDFRNFCKIDASKQITNY 254
Query: 220 VKSVFRFDVIEMG---ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQ 276
+ + VI + L +++G+ FL+ QVR M+A+L IG++ P ++ +L +
Sbjct: 255 HRRILSSKVICIDPSTGLYAFDLQGTAFLWHQVRCMMAILFLIGQKLEPASLINDLLDIK 314
Query: 277 DRKELAKYALSAPPHGLCLVEVKYNEEHLRLPAACPLSS 315
Y + A + L L + ++ LP P ++
Sbjct: 315 KVPTKPIYDM-ASEYPLILYDCDFDNIEWTLPTDSPTTA 352
>DICTYBASE|DDB_G0283061 [details] [associations]
symbol:DDB_G0283061 "tRNA pseudouridine synthase truA
family" species:44689 "Dictyostelium discoideum" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 dictyBase:DDB_G0283061 GO:GO:0003723 EMBL:AAFI02000049
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 RefSeq:XP_639285.1 ProteinModelPortal:Q54RR6
STRING:Q54RR6 EnsemblProtists:DDB0218427 GeneID:8623854
KEGG:ddi:DDB_G0283061 InParanoid:Q54RR6 OMA:SISHIKI
ProtClustDB:CLSZ2728984 Uniprot:Q54RR6
Length = 343
Score = 173 (66.0 bits), Expect = 8.3e-16, Sum P(2) = 8.3e-16
Identities = 55/199 (27%), Positives = 101/199 (50%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALI-RVTKLEREDLRLVGASRTDTGVHAW 108
+++++ Y G + G+Q + P ++ V++ L + K+ + +VG+SRTD GV A
Sbjct: 4 RYKIIYEYIGKSFTGFQ-RLKYPVVKLPVQQVLEDSLEKIHGYKIPIVGSSRTDHGVSAV 62
Query: 109 GQVAHFI--TPFSYDGLE-------SIHAALNGLLPPD----IRVREISAAVPEFHARFS 155
GQV+HF T S G+E + A+N + + IR+ + +FH RF+
Sbjct: 63 GQVSHFDVKTRTSKSGIEMPLLSPEELTMAINYNVGKEYLKSIRIIKTEIVDDKFHCRFN 122
Query: 156 AKSKIYHYKIYNDAVMD--PFQRHYAYHSVYK-LNTTLMRQAAEYFVGKHDFSAFVNVQR 212
A S+ Y Y++ + P + + V LN MR+A+E F+G HDFS+F + +
Sbjct: 123 ATSRTYLYRVMANCGRKQIPLELLDRVYLVGPILNLDEMRKASEMFIGTHDFSSFRSAKC 182
Query: 213 NDRLLNPVKSVFRFDVIEM 231
+ P++S+ + ++
Sbjct: 183 SST--RPIRSISHIKIYDL 199
Score = 85 (35.0 bits), Expect = 8.3e-16, Sum P(2) = 8.3e-16
Identities = 20/66 (30%), Positives = 38/66 (57%)
Query: 237 LEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLV 296
+E++ FL+ QVR MVA L+++G+ I + ++ +D+K+ +A P L L+
Sbjct: 242 IEIKARAFLHNQVRIMVASLIKVGEGEIS---IQQLEEIKDKKDRGAAPPTASPEPLTLL 298
Query: 297 EVKYNE 302
V Y++
Sbjct: 299 TVSYDD 304
>TIGR_CMR|CJE_0914 [details] [associations]
symbol:CJE_0914 "tRNA pseudouridine synthase A"
species:195099 "Campylobacter jejuni RM1221" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 ProtClustDB:PRK00021 RefSeq:YP_178916.1
ProteinModelPortal:Q5HUW9 STRING:Q5HUW9 GeneID:3231427
KEGG:cjr:CJE0914 PATRIC:20043595 HOGENOM:HOG000248673 OMA:NYCYEYL
BioCyc:CJEJ195099:GJC0-934-MONOMER Uniprot:Q5HUW9
Length = 240
Score = 194 (73.4 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 69/252 (27%), Positives = 110/252 (43%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
K +++ +YDGT + G Q +Q + AL + L+ ASRTD GVHA
Sbjct: 2 KIKIIFSYDGTAFLGSATQPHKKGVQDALSGALSHLGIFSP----LLMASRTDKGVHASY 57
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
VA + LE + LN P I +++I +F RF KS+ Y Y I++ +
Sbjct: 58 AVASVECGDYFTNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVRFDVKSREYRY-IFSHS 116
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
PF Y H K + + +FVGK D F +++ ++ +F
Sbjct: 117 SYSPFMASYV-HFYPKFDLDKANELLGFFVGKKDLKFFCKSGGDNK--TTLREIFIARAY 173
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQ-DRKELAKYALSA 288
+ +GFL Q+R VA +L++ + + K L Q + K+ + L A
Sbjct: 174 AYKDFSIFHFKANGFLRGQIRLSVASVLKV----LEGKMSEKELKEQIEAKKQYNHFL-A 228
Query: 289 PPHGLCLVEVKY 300
PP+GL L + Y
Sbjct: 229 PPNGLYLSRICY 240
>GENEDB_PFALCIPARUM|PFE0815w [details] [associations]
symbol:PFE0815w "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=RCA] InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
EMBL:AL844504 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 RefSeq:XP_001351720.1
ProteinModelPortal:Q8I3U5 EnsemblProtists:PFE0815w:mRNA
GeneID:812978 KEGG:pfa:PFE0815w EuPathDB:PlasmoDB:PF3D7_0516300
Uniprot:Q8I3U5
Length = 681
Score = 126 (49.4 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 43/151 (28%), Positives = 67/151 (44%)
Query: 161 YHYKI---YNDAV--MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRND- 214
YH + YND M + SV + +++ A+ F+G H+F F +
Sbjct: 521 YHKNMKSSYNDISHSMKIINKEKEIRSVIPCDINKIKECAKLFIGHHNFECFRGTLKGTE 580
Query: 215 --RLLNPVKSVFRFDVIEM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPK 271
R +N ++ DV E+ L Q ++G FLY +R +V L+Q+G + + V
Sbjct: 581 KLRKINTFCTIHFLDVYELKNNLYQFVIQGDRFLYHMIRIIVGTLVQVGVGLLNVEDVRD 640
Query: 272 ILATQDRKELAKYALSAPPHGLCLVEVKYNE 302
L K L K L AP GLCL ++ E
Sbjct: 641 ALHLC--KPL-KVKLCAPSQGLCLNKILLQE 668
Score = 118 (46.6 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 32/99 (32%), Positives = 50/99 (50%)
Query: 88 LEREDLRLVGASRTDTGVHAWGQVAHFIT----PFSYDG-LESIHAALNGLLPPDIRVRE 142
+ + +G SRTD GVHA + +I+ P DG +E I +LN LL DI++
Sbjct: 214 INNKPFEFIGVSRTDKGVHAKEYICQYISYEKEP-PCDGDMEHIKRSLNSLLNKDIKILA 272
Query: 143 ISAAVPE-FHARFSAKSKIYHYKIYNDAVMDPFQRHYAY 180
+ + + F+ RF KIY Y + P +R+YA+
Sbjct: 273 VLKSPHDHFNIRFHNSGKIYTYNLDIRNPSQPLERNYAW 311
Score = 58 (25.5 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 31 LEGTNNTVKPPTDDSFPGFKWR-------LVIAYDGTRYAGW 65
+E NN+V D+S F R L++ YDGT Y GW
Sbjct: 81 MEQQNNSVNVSKDNSSFIFSNRKKLTNLLLIVNYDGTNYNGW 122
>UNIPROTKB|Q8I3U5 [details] [associations]
symbol:PFE0815w "tRNA pseudouridine synthase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
EMBL:AL844504 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 RefSeq:XP_001351720.1
ProteinModelPortal:Q8I3U5 EnsemblProtists:PFE0815w:mRNA
GeneID:812978 KEGG:pfa:PFE0815w EuPathDB:PlasmoDB:PF3D7_0516300
Uniprot:Q8I3U5
Length = 681
Score = 126 (49.4 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 43/151 (28%), Positives = 67/151 (44%)
Query: 161 YHYKI---YNDAV--MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRND- 214
YH + YND M + SV + +++ A+ F+G H+F F +
Sbjct: 521 YHKNMKSSYNDISHSMKIINKEKEIRSVIPCDINKIKECAKLFIGHHNFECFRGTLKGTE 580
Query: 215 --RLLNPVKSVFRFDVIEM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPK 271
R +N ++ DV E+ L Q ++G FLY +R +V L+Q+G + + V
Sbjct: 581 KLRKINTFCTIHFLDVYELKNNLYQFVIQGDRFLYHMIRIIVGTLVQVGVGLLNVEDVRD 640
Query: 272 ILATQDRKELAKYALSAPPHGLCLVEVKYNE 302
L K L K L AP GLCL ++ E
Sbjct: 641 ALHLC--KPL-KVKLCAPSQGLCLNKILLQE 668
Score = 118 (46.6 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 32/99 (32%), Positives = 50/99 (50%)
Query: 88 LEREDLRLVGASRTDTGVHAWGQVAHFIT----PFSYDG-LESIHAALNGLLPPDIRVRE 142
+ + +G SRTD GVHA + +I+ P DG +E I +LN LL DI++
Sbjct: 214 INNKPFEFIGVSRTDKGVHAKEYICQYISYEKEP-PCDGDMEHIKRSLNSLLNKDIKILA 272
Query: 143 ISAAVPE-FHARFSAKSKIYHYKIYNDAVMDPFQRHYAY 180
+ + + F+ RF KIY Y + P +R+YA+
Sbjct: 273 VLKSPHDHFNIRFHNSGKIYTYNLDIRNPSQPLERNYAW 311
Score = 58 (25.5 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 31 LEGTNNTVKPPTDDSFPGFKWR-------LVIAYDGTRYAGW 65
+E NN+V D+S F R L++ YDGT Y GW
Sbjct: 81 MEQQNNSVNVSKDNSSFIFSNRKKLTNLLLIVNYDGTNYNGW 122
>UNIPROTKB|F1P3X5 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071 OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:AADN02042043 EMBL:AADN02042044
IPI:IPI00588906 Ensembl:ENSGALT00000001417 Uniprot:F1P3X5
Length = 379
Score = 167 (63.8 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 54/180 (30%), Positives = 82/180 (45%)
Query: 119 SYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHY 178
S + L H LN +LPPDIRV + P+F ARFS + Y Y
Sbjct: 152 SEEELRYTHI-LNRVLPPDIRVLAWAPVEPDFSARFSCLKRTYRY--------------- 195
Query: 179 AYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI------EMG 232
+ L+ LM AA+ +VG HDF + + ++N +++ V E G
Sbjct: 196 -FFPCADLDVALMHTAAQRYVGTHDFRNLCKMDVANGVINFQRTILSAQVTWADGGAESG 254
Query: 233 A-----LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
L Q EV G FLY QVR M+A+L IG+ P+I+ ++L + +Y+++
Sbjct: 255 LRDPFRLCQFEVTGQAFLYHQVRCMMAILFLIGQRMEGPEIIDELLDVEKNPRKPQYSMA 314
Score = 74 (31.1 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 34/101 (33%), Positives = 45/101 (44%)
Query: 20 STNKQGVGVVGLEGTNNTVKP----PTDDSFPGFKW-RLVIAYDGTRYAGWQFQTSPPTI 74
S K+G V T+ K P D S G + L IAY G Y G+ Q + T
Sbjct: 25 SEGKEGTAVKDTPSTSRKSKKQQQRPFDFSAHGRRHVALRIAYLGWGYQGFASQEN--TS 82
Query: 75 QCIVEKAL--IRVTKL--EREDLRLVGASRTDTGVHAWGQV 111
I EK ++ T+L +R+ RTD GV A+GQV
Sbjct: 83 NTIEEKLFEALKKTRLVDDRQTSNYHRCGRTDKGVSAFGQV 123
>TAIR|locus:2024397 [details] [associations]
symbol:AT1G09800 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;TAS] [GO:0019243
"methylglyoxal catabolic process to D-lactate" evidence=RCA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 EMBL:CP002684 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142 OMA:RHYRYRI
IPI:IPI00517202 RefSeq:NP_172451.2 UniGene:At.477 UniGene:At.49869
ProteinModelPortal:F4I2L0 SMR:F4I2L0 PRIDE:F4I2L0
EnsemblPlants:AT1G09800.1 GeneID:837510 KEGG:ath:AT1G09800
Uniprot:F4I2L0
Length = 372
Score = 169 (64.5 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 58/234 (24%), Positives = 107/234 (45%)
Query: 16 GLLPSTNKQGVGVVGLEGTNNTVKPPTDDSFPGFKWRLVIAYDGTRYAGWQFQTSPPTIQ 75
G +++ G+ LE N V P ++ + I Y GTR++G Q Q T+
Sbjct: 29 GFSDEESEEQQGLADLESMN-PVNPRVQ------RYLVAIEYIGTRFSGSQQQAKDRTVV 81
Query: 76 CIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHF------------ITPFSYDGL 123
++++A K + +++ +SRTD GVHA V H + P G+
Sbjct: 82 GVLQEAF---HKFIGQPVKIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGV 138
Query: 124 ESIHAALNGLLPP---DIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPF---QRH 177
+ A+N L D+ V ++ +HAR+ A+ + Y Y++ + + DP ++
Sbjct: 139 --VQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQERTYFYRLLSGS--DPLSILEKD 194
Query: 178 YAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
+H +LN M++A VG HDFS+F + +P++S+ ++ E+
Sbjct: 195 RCWHVPEELNLRFMQEACRVLVGSHDFSSFRAAGCQAK--SPMRSLDELNITEV 246
Score = 71 (30.1 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 243 GFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEVKY 300
GFLY QVR +V L +G + V +IL + K ++ AP GL L V+Y
Sbjct: 315 GFLYHQVRLIVGALKCVGTGELTVSDVERIL---EAKTVSAAKPMAPASGLYLARVRY 369
>RGD|1559560 [details] [associations]
symbol:Pusl1 "pseudouridylate synthase-like 1" species:10116
"Rattus norvegicus" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 RGD:1559560 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
IPI:IPI00779525 Ensembl:ENSRNOT00000055334 ArrayExpress:F1M9T7
Uniprot:F1M9T7
Length = 278
Score = 148 (57.2 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 61/184 (33%), Positives = 86/184 (46%)
Query: 91 EDLRLVGASRTDTGVHAWGQVAHFIT-------PFSYDGLESIHAALNGLLP-PDIRVRE 142
E +R +SRTD GVHA AH PFS E + ALN L P IRV +
Sbjct: 20 EPVRFTISSRTDAGVHALSNAAHLDIQRRPGRPPFSP---EIVTKALNTHLKHPAIRVLK 76
Query: 143 ISAAVPEFHARFSAKSKIYHYKIYNDAV----MDPFQRH--YAYHSVYKLNTTLMRQAAE 196
+FHAR +A S+ Y Y++ + F+++ ++ + Y L+ M++AA+
Sbjct: 77 AFRVPNDFHARHAATSRTYLYRLATGCSGPNQLPVFEQNVCWSLQTEY-LDIAAMQEAAQ 135
Query: 197 YFVGKHDFSAFVN----VQRNDRLLNPVK----SVFRFDVIEMGALLQ---LEVEGSGFL 245
+ +G HDFSAF + V R L V F + + LQ LE E FL
Sbjct: 136 HLLGTHDFSAFQSAGSPVPHAVRTLRRVSVSPGPASLFVLPQESRRLQFWTLEFESQSFL 195
Query: 246 YRQV 249
YRQV
Sbjct: 196 YRQV 199
Score = 89 (36.4 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 25/55 (45%), Positives = 31/55 (56%)
Query: 248 QVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY-ALSAPPHGLCLVEVKYN 301
QVR M A+L+ +G + P V IL +QD L KY A AP HGL L V Y+
Sbjct: 220 QVRRMTAVLVAVGLGILAPTQVKVILESQD--PLGKYQARVAPAHGLFLKSVLYD 272
>WB|WBGene00006473 [details] [associations]
symbol:tag-124 species:6239 "Caenorhabditis elegans"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:Z47075 RefSeq:NP_496062.3
GeneID:174509 KEGG:cel:CELE_E02H1.3 CTD:174509 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 HOGENOM:HOG000199032
OMA:NHAVKTH GeneTree:ENSGT00510000047444 PIR:T20413
ProteinModelPortal:Q09524 SMR:Q09524 STRING:Q09524
EnsemblMetazoa:E02H1.3 UCSC:E02H1.3.1 WormBase:E02H1.3
InParanoid:Q09524 NextBio:884332 Uniprot:Q09524
Length = 402
Score = 198 (74.8 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 67/215 (31%), Positives = 99/215 (46%)
Query: 102 DTGVHAWGQVA--HFITPFSYDGLESIHAA-LNGLLPPDIRVREISAAVPEFHARFSAKS 158
D+GV W H + G E + LNG+LP IRV + F+ARF
Sbjct: 106 DSGVF-WSDSTQEHQKVDYKASGEELPYVKMLNGVLPKTIRVFAWAPVAQTFNARFDCNR 164
Query: 159 KIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRND-RLL 217
+ Y Y A D LN MRQ AE VG+HDFS F + N+ RLL
Sbjct: 165 RTYKYSF---AKAD-------------LNLEKMRQGAELLVGEHDFSNFCQIDMNEKRLL 208
Query: 218 NP-VKSVFRFDVIE--------MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDI 268
V+ V+ V + M ++++L V GSGFL+ +R +V +L +IG+E P +
Sbjct: 209 QSYVRKVYEVKVEQVSTHPENDMYSMVELTVSGSGFLWHMIRYIVTILQEIGRENEQPSL 268
Query: 269 VPKILATQDRKELAKYALSAPPHGLCLVEVKYNEE 303
+ ++L + +Y L++ LCL + Y E
Sbjct: 269 ISQLLDLKKYPSRPQYTLASDTP-LCLFDCGYKSE 302
>UNIPROTKB|Q8N0Z8 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase-like 1"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723 EMBL:AL139287
EMBL:CH471183 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 EMBL:AK075292 EMBL:AK298218
EMBL:BC034304 IPI:IPI00166125 IPI:IPI00915388 RefSeq:NP_699170.1
UniGene:Hs.400659 ProteinModelPortal:Q8N0Z8 SMR:Q8N0Z8
STRING:Q8N0Z8 PhosphoSite:Q8N0Z8 DMDM:52783232 PRIDE:Q8N0Z8
DNASU:126789 Ensembl:ENST00000379031 GeneID:126789 KEGG:hsa:126789
UCSC:uc001aed.3 UCSC:uc010nyi.2 CTD:126789 GeneCards:GC01P001233
HGNC:HGNC:26914 HPA:HPA032057 neXtProt:NX_Q8N0Z8
PharmGKB:PA134947837 HOGENOM:HOG000248674 HOVERGEN:HBG053770
InParanoid:Q8N0Z8 OMA:WALPADC OrthoDB:EOG4P5K9S PhylomeDB:Q8N0Z8
ChiTaRS:PUSL1 GenomeRNAi:126789 NextBio:81916 Bgee:Q8N0Z8
CleanEx:HS_PUSL1 Genevestigator:Q8N0Z8 GermOnline:ENSG00000169972
Uniprot:Q8N0Z8
Length = 303
Score = 192 (72.6 bits), Expect = 2.9e-13, P = 2.9e-13
Identities = 68/205 (33%), Positives = 100/205 (48%)
Query: 136 PDIRVREISAAVPEFHARFSAKSKIYHYKI----YNDAVMDPFQRHYAYHSVYK-LNTTL 190
P IRV +FHAR +A S+ Y Y++ + + F+R+ + L+
Sbjct: 105 PAIRVLRAFRVPSDFHARHAATSRTYLYRLATGCHRRDELPVFERNLCWTLPADCLDMVA 164
Query: 191 MRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI--EMGALL-----------QL 237
M++AA++ +G HDFSAF + + +PV+++ R V + L+ L
Sbjct: 165 MQEAAQHLLGTHDFSAFQSA--GSPVPSPVRTLRRVSVSPGQASPLVTPEESRKLRFWNL 222
Query: 238 EVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS-APPHGLCLV 296
E E FLYRQVR M A+L+ +G A+ P V IL +QD L K+ AP HGL L
Sbjct: 223 EFESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILESQD--PLGKHQTRVAPAHGLFLK 280
Query: 297 EVKYNEEHLRLPAACPLSS--FGRH 319
V Y +L A+C L FG H
Sbjct: 281 SVLYG--NLGA-ASCTLQGPQFGSH 302
Score = 145 (56.1 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 52/168 (30%), Positives = 82/168 (48%)
Query: 74 IQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFIT-------PFSYDGLESI 126
+Q +E+A R+ +E +R +SRTD GVHA AH PF + L
Sbjct: 40 VQNYLEEAAERLNSVE--PVRFTISSRTDAGVHALSNAAHLDVQRRSGRPPFPPEVLAE- 96
Query: 127 HAALNG-LLPPDIRVREISAAVPEFHARFSAKSKIYHYKI----YNDAVMDPFQRHYAYH 181
ALN L P IRV +FHAR +A S+ Y Y++ + + F+R+ +
Sbjct: 97 --ALNTHLRHPAIRVLRAFRVPSDFHARHAATSRTYLYRLATGCHRRDELPVFERNLCWT 154
Query: 182 SVYK-LNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
L+ M++AA++ +G HDFSAF + + +PV+++ R V
Sbjct: 155 LPADCLDMVAMQEAAQHLLGTHDFSAFQSA--GSPVPSPVRTLRRVSV 200
>MGI|MGI:3047787 [details] [associations]
symbol:Pusl1 "pseudouridylate synthase-like 1" species:10090
"Mus musculus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 MGI:MGI:3047787 GO:GO:0003723 GO:GO:0008033
EMBL:AL670236 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
UniGene:Mm.259270 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 CTD:126789
HOGENOM:HOG000248674 HOVERGEN:HBG053770 OMA:WALPADC
OrthoDB:EOG4P5K9S EMBL:AK151452 EMBL:AK160236 IPI:IPI00458175
IPI:IPI00626517 IPI:IPI00875388 RefSeq:NP_001028662.1
ProteinModelPortal:A2ADA5 SMR:A2ADA5 STRING:A2ADA5
PhosphoSite:A2ADA5 PaxDb:A2ADA5 PRIDE:A2ADA5
Ensembl:ENSMUST00000097737 GeneID:433813 KEGG:mmu:433813
UCSC:uc008wfi.1 UCSC:uc012drb.1 GeneTree:ENSGT00510000048520
InParanoid:A2ADA5 NextBio:409016 Bgee:A2ADA5 Genevestigator:A2ADA5
Uniprot:A2ADA5
Length = 291
Score = 190 (71.9 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 69/206 (33%), Positives = 101/206 (49%)
Query: 116 TPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV----M 171
+PFS + + A L P IRV + +FHAR +A S+ Y Y++ +
Sbjct: 87 SPFSPEVVAK--ALNTHLKHPAIRVLKAFRVPNDFHARHAATSRTYQYRLATGCSWPNQL 144
Query: 172 DPFQRH--YAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
F+++ +A + Y L+ M++AA++ +G HDFSAF + + N V+++ R V
Sbjct: 145 PVFEQNVCWALQTEY-LDMAAMQEAAQHLLGTHDFSAFQSA--GSPVTNTVRTLRRVSVS 201
Query: 230 ----------EMGALLQ---LEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQ 276
E LQ LE E FLYRQVR M A+L+ +G + P V IL +Q
Sbjct: 202 PGPASPFVLPEGSRRLQFWTLEFESQSFLYRQVRRMTAVLVAVGLGILAPTQVKVILESQ 261
Query: 277 DRKELAKY-ALSAPPHGLCLVEVKYN 301
D L KY A AP GL L V Y+
Sbjct: 262 D--PLGKYQARVAPARGLFLKSVLYD 285
Score = 154 (59.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 57/196 (29%), Positives = 98/196 (50%)
Query: 50 KWRLVIAYDGTRYAGWQ-FQTSPPTIQCI--VEKALIRVTKLEREDLRLVGASRTDTGVH 106
++ + + Y GT + G + +P + + +E+A R+ ++ +R +SRTD GVH
Sbjct: 13 RYLVFLQYLGTDFNGVAAVRGNPRAVGVLNFLEEAAKRLNSVD--PVRFTISSRTDAGVH 70
Query: 107 AWGQVAHFI-------TPFSYDGLESIHAALNGLLP-PDIRVREISAAVPEFHARFSAKS 158
A AH +PFS E + ALN L P IRV + +FHAR +A S
Sbjct: 71 ALSNAAHLDIQRRPGQSPFSP---EVVAKALNTHLKHPAIRVLKAFRVPNDFHARHAATS 127
Query: 159 KIYHYKIYNDAV----MDPFQRH--YAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQR 212
+ Y Y++ + F+++ +A + Y L+ M++AA++ +G HDFSAF +
Sbjct: 128 RTYQYRLATGCSWPNQLPVFEQNVCWALQTEY-LDMAAMQEAAQHLLGTHDFSAFQSA-- 184
Query: 213 NDRLLNPVKSVFRFDV 228
+ N V+++ R V
Sbjct: 185 GSPVTNTVRTLRRVSV 200
>UNIPROTKB|F1RJE9 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9823
"Sus scrofa" [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142 OMA:WALPADC
GeneTree:ENSGT00510000048520 EMBL:FP102596
Ensembl:ENSSSCT00000003707 Uniprot:F1RJE9
Length = 302
Score = 190 (71.9 bits), Expect = 5.1e-13, P = 5.1e-13
Identities = 70/220 (31%), Positives = 106/220 (48%)
Query: 117 PFSYDGL-ESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV----M 171
PFS + L E+++ L P IRV + FHAR++A S+ Y Y++ +
Sbjct: 88 PFSPEVLTEALNTHLRH---PAIRVLQAFRVPSHFHARYAATSRTYLYRLATGCPRPDHL 144
Query: 172 DPFQRHYAYH-SVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI- 229
F+R+ + L+ M++AA++ +G HDFSAF + +PV+++ R V
Sbjct: 145 SVFERNRCWPLRADCLDVAAMQEAAQHLLGTHDFSAFQST--GSPATSPVRTLRRASVSP 202
Query: 230 EMGALL------------QLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQD 277
E + L LE E FLYRQVR M A+L+ +G A+ P V IL ++D
Sbjct: 203 EPSSPLVLPGESRGLRFWSLEFESQSFLYRQVRRMTAVLVAVGLGALTPAQVKMILESRD 262
Query: 278 RKELAKY-ALSAPPHGLCLVEVKYNE-EHLRLPAACPLSS 315
L ++ + AP HGL L V Y + R P P S
Sbjct: 263 --PLGRHQSRVAPAHGLFLKSVLYGDLGKRRWPKEVPAGS 300
Score = 147 (56.8 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 61/214 (28%), Positives = 97/214 (45%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPT---IQCIVEKALIRVTKLEREDLRLVGASRTDTGVH 106
++ + Y GT + G P +Q +E+A R+ + ++ +SRTD GVH
Sbjct: 13 RYLVYFQYLGTDFNGVAAVRGPQHAVGVQNYLEEAAERLNSVV--PVKFTISSRTDAGVH 70
Query: 107 AWGQVAHFIT-------PFSYDGLESIHAALNG-LLPPDIRVREISAAVPEFHARFSAKS 158
A AH PFS + L ALN L P IRV + FHAR++A S
Sbjct: 71 ALSNAAHLDIQRRSGQPPFSPEVLTE---ALNTHLRHPAIRVLQAFRVPSHFHARYAATS 127
Query: 159 KIYHYKIYNDAV----MDPFQRHYAYH-SVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRN 213
+ Y Y++ + F+R+ + L+ M++AA++ +G HDFSAF +
Sbjct: 128 RTYLYRLATGCPRPDHLSVFERNRCWPLRADCLDVAAMQEAAQHLLGTHDFSAFQST--G 185
Query: 214 DRLLNPVKSVFRFDVI-EMGALLQLEVEGSGFLY 246
+PV+++ R V E + L L E G +
Sbjct: 186 SPATSPVRTLRRASVSPEPSSPLVLPGESRGLRF 219
>UNIPROTKB|F1S759 [details] [associations]
symbol:LOC100739830 "tRNA pseudouridine synthase"
species:9823 "Sus scrofa" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 OMA:NHAVKTH GeneTree:ENSGT00510000047444
EMBL:CU928873 RefSeq:XP_003482688.1 Ensembl:ENSSSCT00000016588
GeneID:100739830 KEGG:ssc:100739830 Uniprot:F1S759
Length = 479
Score = 190 (71.9 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 80/270 (29%), Positives = 125/270 (46%)
Query: 53 LVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLE-REDLRLVGASRTDTGVHAWGQ 110
L IAY G Y G+ Q + TI+ + +AL + +E R+ RTD GV A+GQ
Sbjct: 66 LKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVENRQTSNYHRCGRTDKGVSAFGQ 125
Query: 111 V------AHFITPFSYDGL---ESIHAA---------LNGLLPPDIRVREISAAVPEFHA 152
V +HF+ + + + ++ A LN +LPPDIRV + P F A
Sbjct: 126 VISLDLRSHFLKDKDSEDINLKDEVNDATKEIRYTHILNRVLPPDIRVLAWAPVEPSFSA 185
Query: 153 RFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFV--GKHDFSAFVNV 210
RFS + Y Y + A +D +YA Y + T R + V G +F + +
Sbjct: 186 RFSCLERTYRY-FFPHADLDIVTMNYAAQK-Y-VGTHDFRNLCKMDVANGVTNFQRTI-L 241
Query: 211 QRNDRLLNPVKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVP 270
+LL+ R+ E L Q EV G FLY QVR M+A+L IG+ P+++
Sbjct: 242 SAQVQLLSQSLEEERWQ--EAFQLCQFEVVGQAFLYHQVRCMMAVLFLIGQGMEKPEVID 299
Query: 271 KILATQDRKELAKYALSAPPHGLCLVEVKY 300
++L + + +Y++ A L L + K+
Sbjct: 300 ELLNIEKNPQKPQYSM-AVEFPLVLYDCKF 328
>UNIPROTKB|F1RVF1 [details] [associations]
symbol:LOC100739830 "tRNA pseudouridine synthase"
species:9823 "Sus scrofa" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047444 OMA:CQVISID
Ensembl:ENSSSCT00000012144 Uniprot:F1RVF1
Length = 479
Score = 189 (71.6 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 80/270 (29%), Positives = 125/270 (46%)
Query: 53 LVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLE-REDLRLVGASRTDTGVHAWGQ 110
L IAY G Y G+ Q + TI+ + +AL + +E R+ RTD GV A+GQ
Sbjct: 66 LKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVENRQTSNYHRCGRTDKGVSAFGQ 125
Query: 111 V------AHFITPFSYDGL---ESIHAA---------LNGLLPPDIRVREISAAVPEFHA 152
V +HF+ + + + ++ A LN +LPPDIRV + P F A
Sbjct: 126 VISLDLRSHFLKDKDSEDINLKDEVNDATKEIRYTHILNRVLPPDIRVLAWAPVEPSFSA 185
Query: 153 RFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFV--GKHDFSAFVNV 210
RFS + Y Y + A +D +YA Y + T R + V G +F + +
Sbjct: 186 RFSCLERTYRY-FFPHADLDIVTMNYAAQK-Y-VGTHDFRNLCKMDVANGVTNFQRTI-L 241
Query: 211 QRNDRLLNPVKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVP 270
+LL+ R+ E L Q EV G FLY QVR M+A+L IG+ P+++
Sbjct: 242 SAQVQLLSQSLEEERWQ--EAFQLCQFEVVGQAFLYHQVRCMMAVLFLIGQGMEKPEVID 299
Query: 271 KILATQDRKELAKYALSAPPHGLCLVEVKY 300
++L + + +Y++ A L L + K+
Sbjct: 300 ELLNIEKNPQKHQYSM-AVEFPLVLYDCKF 328
>UNIPROTKB|A6QP68 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9913
"Bos taurus" [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 HOGENOM:HOG000248674 HOVERGEN:HBG053770
OMA:WALPADC OrthoDB:EOG4P5K9S GeneTree:ENSGT00510000048520
EMBL:DAAA02043243 EMBL:BC149176 IPI:IPI00698369 UniGene:Bt.62155
STRING:A6QP68 Ensembl:ENSBTAT00000044945 InParanoid:A6QP68
Uniprot:A6QP68
Length = 312
Score = 181 (68.8 bits), Expect = 8.1e-12, P = 8.1e-12
Identities = 66/206 (32%), Positives = 102/206 (49%)
Query: 115 ITPFSYDGL-ESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV--- 170
+ PFS + L E+++ L P IRV + FHAR +A S+ Y Y++
Sbjct: 107 LPPFSPEVLTEALNTHLKH---PAIRVLQAFRVPSHFHARHAAISRTYLYRLATGCPRPD 163
Query: 171 -MDPFQRHYAYH-SVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFR--- 225
+ F+R+ + L+ M++AA++ +G HDFSAF + +PV+++ R
Sbjct: 164 RLPVFERNRCWALQADCLDVAAMQEAAQHLLGTHDFSAFQSA--GSPASSPVRTLRRASV 221
Query: 226 -------FDVIEMGALLQ---LEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILAT 275
F + E LQ +E E FLY+QVR M A+L+ +G A+ P V IL +
Sbjct: 222 SPDPASPFVLPEESRQLQFWSMEFESQSFLYKQVRRMTAVLVAVGLGALMPAQVKAILES 281
Query: 276 QDRKELAKY-ALSAPPHGLCLVEVKY 300
+D L K+ + AP HGL L V Y
Sbjct: 282 RD--PLGKHQSRVAPAHGLFLKSVLY 305
Score = 140 (54.3 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 51/168 (30%), Positives = 81/168 (48%)
Query: 74 IQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHF-------ITPFSYDGLESI 126
+Q +E+A R+ + ++ +SRTD GVHA AH + PFS + L
Sbjct: 61 VQNYLEEAAERLNSVM--PVKFTISSRTDAGVHALSNAAHLDIQRRSDLPPFSPEVLTE- 117
Query: 127 HAALNGLLP-PDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV----MDPFQRHYAYH 181
ALN L P IRV + FHAR +A S+ Y Y++ + F+R+ +
Sbjct: 118 --ALNTHLKHPAIRVLQAFRVPSHFHARHAAISRTYLYRLATGCPRPDRLPVFERNRCWA 175
Query: 182 -SVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
L+ M++AA++ +G HDFSAF + +PV+++ R V
Sbjct: 176 LQADCLDVAAMQEAAQHLLGTHDFSAFQSA--GSPASSPVRTLRRASV 221
>SGD|S000001895 [details] [associations]
symbol:DEG1 "tRNA:pseudouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IMP;IDA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IDA;IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0016853 "isomerase
activity" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 SGD:S000001895 GO:GO:0005634 GO:GO:0005737 EMBL:D50617
EMBL:BK006940 GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 KO:K01855 BRENDA:5.4.99.12 eggNOG:COG0101
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000199032
GeneTree:ENSGT00510000047444 EMBL:AY693197 PIR:S14145
RefSeq:NP_116655.1 ProteinModelPortal:P31115 SMR:P31115
DIP:DIP-5151N IntAct:P31115 MINT:MINT-531752 STRING:P31115
PaxDb:P31115 PeptideAtlas:P31115 PRIDE:P31115 EnsemblFungi:YFL001W
GeneID:850550 KEGG:sce:YFL001W CYGD:YFL001w OMA:KFSRCGR
OrthoDB:EOG46T69C NextBio:966327 Genevestigator:P31115
GermOnline:YFL001W Uniprot:P31115
Length = 442
Score = 185 (70.2 bits), Expect = 8.3e-12, P = 8.3e-12
Identities = 76/270 (28%), Positives = 118/270 (43%)
Query: 53 LVIAYDGTRYAGWQFQ---TSPPTIQCIVEKALIR---VTKLEREDLRLVGASRTDTGVH 106
L AY G Y G Q T PT++ + +A+ + V + +D + RTD GV
Sbjct: 96 LRFAYLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKGVS 155
Query: 107 AWGQVAHF-----ITPFSY-----DGLES--IHAALNGLLPPDIRVREISAAVP-EFHAR 153
A QV +T D E +H LN LLP DIR+ + P F AR
Sbjct: 156 AMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHV-LNQLLPDDIRISAVCLRPPPNFDAR 214
Query: 154 FSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRN 213
FS + Y Y I+N LN M +AA YFVG+ DF F + +
Sbjct: 215 FSCVHRHYKY-IFNGK---------------NLNIEKMSKAASYFVGERDFRNFCKLDGS 258
Query: 214 DRLLNPVKSVFRFDVIEMGALLQ-LEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKI 272
++ N +++ ++ + ++ GS FL+ QVR M+A+L +G+ P+IV ++
Sbjct: 259 KQITNFKRTIISSKILPLSETFYCFDLVGSAFLWHQVRCMMAILFLVGQSLEVPEIVLRL 318
Query: 273 LATQDRKELAKYALSAPPHGLCLVEVKYNE 302
+ + Y + A L L + K+ E
Sbjct: 319 TDIEKTPQRPVYEM-ANDIPLLLYDCKFPE 347
>UNIPROTKB|F1PXJ5 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 OMA:WALPADC GeneTree:ENSGT00510000048520
EMBL:AAEX03003844 Ensembl:ENSCAFT00000030633 Uniprot:F1PXJ5
Length = 303
Score = 180 (68.4 bits), Expect = 9.5e-12, P = 9.5e-12
Identities = 71/214 (33%), Positives = 106/214 (49%)
Query: 117 PFSYDGLESIHAALNG-LLPPDIRVREISAAVPEFHARFSAKSKIYHYKI----YNDAVM 171
PFS + L ALN + P IRV + +FHAR +A S+ Y Y++ + +
Sbjct: 88 PFSPEVLAE---ALNAHVRHPAIRVLQAFRVPSDFHARHAATSRTYLYRLVTGCHRPDQL 144
Query: 172 DPFQRHYAYH-SVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI- 229
F+R+ + L+ M++AA++ +G HDF AF + + V+++ R V
Sbjct: 145 SVFERNRCWPLRADCLDVDAMQEAAQHLLGTHDFRAFQSA--GSPTTSSVRTLRRASVSP 202
Query: 230 EMGA---LLQ--------LEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDR 278
+ G+ L Q LE E FLYRQVR M A+L+ +G A+ P V IL ++D
Sbjct: 203 DPGSPFVLAQEKRLHFWNLEFESRSFLYRQVRRMTAVLVAVGLGALRPAQVKVILESRD- 261
Query: 279 KELAKY-ALSAPPHGLCLVEVKYNEEHLRLPAAC 311
L ++ A AP HGL L V Y E+L AC
Sbjct: 262 -PLGRHQARVAPAHGLFLKSVLY--ENLGGNPAC 292
Score = 131 (51.2 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 42/128 (32%), Positives = 63/128 (49%)
Query: 93 LRLVGASRTDTGVHAWGQVAHFIT-------PFSYDGLESIHAALNG-LLPPDIRVREIS 144
+R +SRTD GVHA AH PFS + L ALN + P IRV +
Sbjct: 57 VRFTISSRTDAGVHALSNAAHLDVQRRSGQPPFSPEVLAE---ALNAHVRHPAIRVLQAF 113
Query: 145 AAVPEFHARFSAKSKIYHYKI----YNDAVMDPFQRHYAYH-SVYKLNTTLMRQAAEYFV 199
+FHAR +A S+ Y Y++ + + F+R+ + L+ M++AA++ +
Sbjct: 114 RVPSDFHARHAATSRTYLYRLVTGCHRPDQLSVFERNRCWPLRADCLDVDAMQEAAQHLL 173
Query: 200 GKHDFSAF 207
G HDF AF
Sbjct: 174 GTHDFRAF 181
>UNIPROTKB|J9P592 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 GeneTree:ENSGT00510000048520 EMBL:AAEX03003844
Ensembl:ENSCAFT00000048781 Uniprot:J9P592
Length = 305
Score = 180 (68.4 bits), Expect = 9.8e-12, P = 9.8e-12
Identities = 71/214 (33%), Positives = 106/214 (49%)
Query: 117 PFSYDGLESIHAALNG-LLPPDIRVREISAAVPEFHARFSAKSKIYHYKI----YNDAVM 171
PFS + L ALN + P IRV + +FHAR +A S+ Y Y++ + +
Sbjct: 86 PFSPEVLAE---ALNAHVRHPAIRVLQAFRVPSDFHARHAATSRTYLYRLVTGCHRPDQL 142
Query: 172 DPFQRHYAYH-SVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI- 229
F+R+ + L+ M++AA++ +G HDF AF + + V+++ R V
Sbjct: 143 SVFERNRCWPLRADCLDVDAMQEAAQHLLGTHDFRAFQSA--GSPTTSSVRTLRRASVSP 200
Query: 230 EMGA---LLQ--------LEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDR 278
+ G+ L Q LE E FLYRQVR M A+L+ +G A+ P V IL ++D
Sbjct: 201 DPGSPFVLAQEKRLHFWNLEFESRSFLYRQVRRMTAVLVAVGLGALRPAQVKVILESRD- 259
Query: 279 KELAKY-ALSAPPHGLCLVEVKYNEEHLRLPAAC 311
L ++ A AP HGL L V Y E+L AC
Sbjct: 260 -PLGRHQARVAPAHGLFLKSVLY--ENLGGNPAC 290
Score = 131 (51.2 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 42/128 (32%), Positives = 63/128 (49%)
Query: 93 LRLVGASRTDTGVHAWGQVAHFIT-------PFSYDGLESIHAALNG-LLPPDIRVREIS 144
+R +SRTD GVHA AH PFS + L ALN + P IRV +
Sbjct: 55 VRFTISSRTDAGVHALSNAAHLDVQRRSGQPPFSPEVLAE---ALNAHVRHPAIRVLQAF 111
Query: 145 AAVPEFHARFSAKSKIYHYKI----YNDAVMDPFQRHYAYH-SVYKLNTTLMRQAAEYFV 199
+FHAR +A S+ Y Y++ + + F+R+ + L+ M++AA++ +
Sbjct: 112 RVPSDFHARHAATSRTYLYRLVTGCHRPDQLSVFERNRCWPLRADCLDVDAMQEAAQHLL 171
Query: 200 GKHDFSAF 207
G HDF AF
Sbjct: 172 GTHDFRAF 179
>DICTYBASE|DDB_G0288909 [details] [associations]
symbol:pus3 "tRNA pseudouridylate synthase"
species:44689 "Dictyostelium discoideum" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0006396 "RNA
processing" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0004730 "pseudouridylate
synthase activity" evidence=ISS] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 dictyBase:DDB_G0288909 GO:GO:0005634 GO:GO:0005737
EMBL:AAFI02000126 GenomeReviews:CM000154_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0008033 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0004730 KO:K01855 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
RefSeq:XP_636482.1 ProteinModelPortal:Q54I97 STRING:Q54I97
EnsemblProtists:DDB0231223 GeneID:8626865 KEGG:ddi:DDB_G0288909
InParanoid:Q54I97 OMA:PPYEMAS Uniprot:Q54I97
Length = 491
Score = 159 (61.0 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 50/176 (28%), Positives = 92/176 (52%)
Query: 130 LNGLLPPDIRVREISAAVP-EFHARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNT 188
LNG+LPP+IR+ A VP F+ARFS S+ Y Y +N +D LN
Sbjct: 215 LNGVLPPEIRILAW-APVPFHFNARFSTLSRTYKY-FFNPNGLD-------------LN- 258
Query: 189 TLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV--IEMGALLQLEVEGSGFLY 246
LM++A++ ++G+H++ F + N + ++ + +FD+ +E L ++G FL+
Sbjct: 259 -LMKEASKLYLGEHNYINFCKIDVNVKSF--MRVILQFDIEKVENSELYVATIKGFAFLW 315
Query: 247 RQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEVKYNE 302
Q+R M+A+L IG++ ++ ++L T Y +++ L L + Y++
Sbjct: 316 HQIRCMMAVLFLIGQKKANISLITQLLDTNKTITKPPYEMASEVP-LVLFDCGYDD 370
Score = 61 (26.5 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 62 YAGWQF------QTSPPTIQCIVEKALIRVTKL-EREDLRLVGASRTDTGVHAWGQV 111
Y GW F S TI+ + KA ++ + + + + + RTD GV A+GQV
Sbjct: 93 YVGWPFFGFAAQDCSEETIENYLIKAFLKTSLIPDIKTANYFKSGRTDKGVSAYGQV 149
>RGD|1310757 [details] [associations]
symbol:Pus3 "pseudouridylate synthase 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISO] [GO:0031119
"tRNA pseudouridine synthesis" evidence=IEA;ISO] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 RGD:1310757
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:BC158693 EMBL:CH474007
IPI:IPI00194825 RefSeq:NP_001101604.1 UniGene:Rn.22763
STRING:B0BN58 Ensembl:ENSRNOT00000017648 GeneID:315554
KEGG:rno:315554 UCSC:RGD:1310757 NextBio:669414
Genevestigator:B0BN58 Uniprot:B0BN58
Length = 479
Score = 177 (67.4 bits), Expect = 8.3e-11, P = 8.3e-11
Identities = 82/280 (29%), Positives = 121/280 (43%)
Query: 53 LVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLE-REDLRLVGASRTDTGVHAWGQ 110
L IAY G Y G+ Q + TI+ + +ALI+ +E R+ RTD GV A+GQ
Sbjct: 66 LKIAYLGWGYQGFASQENTSNTIEEKLFEALIKTRLVESRQTSNYHRCGRTDKGVSAFGQ 125
Query: 111 VAHFITPFSY------------DGLESI-----HA-ALNGLLPPDIRVREISAAVPEFHA 152
V + DG + I +A LN +LP DIRV + A P F A
Sbjct: 126 VISLDLRSQFPRSRDSEDSNLKDGADDIAKEIRYAHILNRVLPADIRVLAWAPAEPSFSA 185
Query: 153 RFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQR 212
RFS + Y Y + L+ M AA+ +VG HDF +
Sbjct: 186 RFSCLERTYRY----------------FFPCADLDIATMNYAAQKYVGTHDFRNLCKMDV 229
Query: 213 NDRLLNPVKSVFRFDVI-------EMGA-----LLQLEVEGSGFLYRQVRNMVALLLQIG 260
+ + N +++ V E G L Q EV G FLY QVR M+A+L IG
Sbjct: 230 ANGVTNFQRTILSAQVQTVAQSPGEEGRQGPFQLCQFEVIGQAFLYHQVRCMMAILFLIG 289
Query: 261 KEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEVKY 300
+ P+I+ ++L + + +Y++ A L L + K+
Sbjct: 290 QGMEKPEIIDELLNIEKNPQKPQYSM-AVEFPLVLYDCKF 328
>UNIPROTKB|Q9BZE2 [details] [associations]
symbol:PUS3 "tRNA pseudouridine(38/39) synthase"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0005634 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG EMBL:AF325689 EMBL:AK055702
EMBL:AK314251 EMBL:BC004822 EMBL:BC013427 IPI:IPI00306260
RefSeq:NP_112597.3 UniGene:Hs.660922 ProteinModelPortal:Q9BZE2
SMR:Q9BZE2 STRING:Q9BZE2 PhosphoSite:Q9BZE2 DMDM:126302589
PaxDb:Q9BZE2 PRIDE:Q9BZE2 DNASU:83480 Ensembl:ENST00000227474
Ensembl:ENST00000530811 GeneID:83480 KEGG:hsa:83480 UCSC:uc001qcy.2
GeneCards:GC11M125763 H-InvDB:HIX0010246 HGNC:HGNC:25461
HPA:HPA038040 neXtProt:NX_Q9BZE2 PharmGKB:PA134874048
InParanoid:Q9BZE2 OMA:NHAVKTH PhylomeDB:Q9BZE2 GenomeRNAi:83480
NextBio:72425 ArrayExpress:Q9BZE2 Bgee:Q9BZE2 CleanEx:HS_PUS3
Genevestigator:Q9BZE2 GermOnline:ENSG00000110060 Uniprot:Q9BZE2
Length = 481
Score = 177 (67.4 bits), Expect = 8.4e-11, P = 8.4e-11
Identities = 82/280 (29%), Positives = 121/280 (43%)
Query: 53 LVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLE-REDLRLVGASRTDTGVHAWGQ 110
L IAY G Y G+ Q + TI+ + +AL + +E R+ RTD GV A+GQ
Sbjct: 67 LRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAFGQ 126
Query: 111 VAHFIT----PFSYDG-----LESIHAA---------LNGLLPPDIRVREISAAVPEFHA 152
V P D E +AA LN +LPPDIR+ + P F A
Sbjct: 127 VISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSFSA 186
Query: 153 RFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQR 212
RFS + Y Y F R L+ M AA+ +VG HDF +
Sbjct: 187 RFSCLERTYRYF---------FPRA-------DLDIVTMDYAAQKYVGTHDFRNLCKMDV 230
Query: 213 NDRLLNPVKSVFRFDVIEMGA------------LLQLEVEGSGFLYRQVRNMVALLLQIG 260
+ ++N +++ V +G L Q EV G FLY QVR M+A+L IG
Sbjct: 231 ANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIG 290
Query: 261 KEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEVKY 300
+ P+I+ ++L + + +Y++ A L L + K+
Sbjct: 291 QGMEKPEIIDELLNIEKNPQKPQYSM-AVEFPLVLYDCKF 329
>UNIPROTKB|E2RGS6 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 KO:K01855 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:AAEX03003383 RefSeq:XP_536533.1
ProteinModelPortal:E2RGS6 Ensembl:ENSCAFT00000016731 GeneID:479397
KEGG:cfa:479397 NextBio:20854586 Uniprot:E2RGS6
Length = 480
Score = 176 (67.0 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 79/271 (29%), Positives = 117/271 (43%)
Query: 53 LVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLE-REDLRLVGASRTDTGVHAWGQ 110
L IAY G Y G+ Q + TI+ + AL + +E R+ RTD GV A+GQ
Sbjct: 66 LKIAYLGWGYQGFASQENTNNTIEEKLFDALTKTRLVESRQTSNYHRCGRTDKGVSAFGQ 125
Query: 111 V------AHF----------ITPFSYDGLESIHAA--LNGLLPPDIRVREISAAVPEFHA 152
V +HF + D + I LN +LPPDIRV + P F A
Sbjct: 126 VISLDLRSHFPEGSTSEDSNLKNEVNDVAKEIRYTHILNRVLPPDIRVLAWAPVEPSFSA 185
Query: 153 RFSAKSKIYHYKIYNDAVMDPFQRHYA---YHSVYKLNTTLMRQAAEYFVGKHDFSAFVN 209
RFS + Y Y + A +D +YA Y + A + F
Sbjct: 186 RFSCLERTYRY-FFPRADLDIITMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTVLFAQ 244
Query: 210 VQRNDRLLNPVKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIV 269
V+ + L+ K ++ E L Q EV G FLY QVR M+A+L IG+ P+I+
Sbjct: 245 VELVGQSLD--KEQWQ----EPFQLCQFEVVGQAFLYHQVRCMMAILFLIGQGMEKPEII 298
Query: 270 PKILATQDRKELAKYALSAPPHGLCLVEVKY 300
++L + + +Y++ A L L + K+
Sbjct: 299 DELLNIEKNPQKPQYSM-AVEFPLVLYDCKF 328
>MGI|MGI:1914299 [details] [associations]
symbol:Pus3 "pseudouridine synthase 3" species:10090 "Mus
musculus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IDA] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IDA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 MGI:MGI:1914299 GO:GO:0005634 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 UniGene:Mm.482285 GO:GO:0031119
KO:K01855 eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG OMA:NHAVKTH EMBL:AF266505
EMBL:AK079095 EMBL:BC029253 IPI:IPI00331619 RefSeq:NP_075781.3
UniGene:Mm.425574 ProteinModelPortal:Q9JI38 SMR:Q9JI38
STRING:Q9JI38 PhosphoSite:Q9JI38 PRIDE:Q9JI38
Ensembl:ENSMUST00000034615 GeneID:67049 KEGG:mmu:67049
UCSC:uc009oth.2 GeneTree:ENSGT00510000047444 InParanoid:Q9JI38
BRENDA:4.2.1.70 NextBio:323424 Bgee:Q9JI38 CleanEx:MM_PUS3
Genevestigator:Q9JI38 GermOnline:ENSMUSG00000032103 Uniprot:Q9JI38
Length = 481
Score = 174 (66.3 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 83/280 (29%), Positives = 122/280 (43%)
Query: 53 LVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLE-REDLRLVGASRTDTGVHAWGQ 110
L IAY G Y G+ Q + TI+ + +AL + +E R+ RTD GV A+GQ
Sbjct: 68 LKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAFGQ 127
Query: 111 VAHFIT----PFSYDGLESI--HAA------------LNGLLPPDIRVREISAAVPEFHA 152
V P S D +S H A LN +LP DIRV + P F A
Sbjct: 128 VISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEPSFSA 187
Query: 153 RFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQR 212
RFS + Y Y F R L+ M AA+ +VG HDF +
Sbjct: 188 RFSCLERTYRYF---------FPRA-------DLDIATMNYAAQKYVGTHDFRNLCKMDV 231
Query: 213 NDRLLNPVKSVF--RFDVI----------EMGALLQLEVEGSGFLYRQVRNMVALLLQIG 260
+ ++N +++ + ++ E L Q EV G FLY QVR M+A+L IG
Sbjct: 232 ANGVINFQRTILCAQVQLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIG 291
Query: 261 KEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEVKY 300
+ P+I+ ++L Q + +Y++ A L L + K+
Sbjct: 292 QGMEKPEIIDELLNIQKNPQKPQYSM-AVEFPLVLYDCKF 330
>UNIPROTKB|F1LXZ7 [details] [associations]
symbol:Pusl1 "tRNA pseudouridine synthase" species:10116
"Rattus norvegicus" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 RGD:1559560 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
IPI:IPI00359178 Ensembl:ENSRNOT00000036307 ArrayExpress:F1LXZ7
Uniprot:F1LXZ7
Length = 217
Score = 157 (60.3 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 53/171 (30%), Positives = 85/171 (49%)
Query: 136 PDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV----MDPFQRH--YAYHSVYKLNTT 189
P IRV + +FHAR +A S+ Y Y++ + F+++ ++ + Y L+
Sbjct: 39 PAIRVLKAFRVPNDFHARHAATSRTYLYRLATGCSGPNQLPVFEQNVCWSLQTEY-LDIA 97
Query: 190 LMRQAAEYFVGKHDFSAFVN----VQRNDRLLNPVK----SVFRFDVIEMGALLQ---LE 238
M++AA++ +G HDFSAF + V R L V F + + LQ LE
Sbjct: 98 AMQEAAQHLLGTHDFSAFQSAGSPVPHAVRTLRRVSVSPGPASLFVLPQESRRLQFWTLE 157
Query: 239 VEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E FLYRQVR M A+L+ +G + P V IL +QD +++ + +P
Sbjct: 158 FESQSFLYRQVRRMTAVLVAVGLGILAPTQVKVILESQDPGQVSGSSCPSP 208
>UNIPROTKB|F1N5P3 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9913 "Bos
taurus" [GO:0031119 "tRNA pseudouridine synthesis" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
IPI:IPI00688075 UniGene:Bt.33259 OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:DAAA02063102
Ensembl:ENSBTAT00000019065 Uniprot:F1N5P3
Length = 481
Score = 172 (65.6 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 79/280 (28%), Positives = 119/280 (42%)
Query: 53 LVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLE-REDLRLVGASRTDTGVHAWGQ 110
L IAY G Y G+ Q + TI+ + +AL + +E R+ RTD GV A+GQ
Sbjct: 67 LKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVENRQTSNYHRCGRTDKGVSAFGQ 126
Query: 111 VAHF-ITPFSYDGLESIHA-----------------ALNGLLPPDIRVREISAAVPEFHA 152
V + G +S H LN +LPPDIRV + F A
Sbjct: 127 VISLDLRSHIPKGRDSEHFNLKNEVNDVATEIRYTHILNRVLPPDIRVLAWAPVETSFSA 186
Query: 153 RFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQR 212
RFS + Y Y F R L+ M AA+ +VG HDF +
Sbjct: 187 RFSCLERTYRYF---------FPRA-------NLDIVTMNYAAQKYVGTHDFRNLCKMDV 230
Query: 213 NDRLLNPVKSVFRFDVIEMGA------------LLQLEVEGSGFLYRQVRNMVALLLQIG 260
+ ++N +++ V +G L Q EV G FLY QVR M+A+L IG
Sbjct: 231 ANGVINFQRTILSAQVQRVGQNLGEEGWQEPFQLCQFEVTGQAFLYHQVRCMMAVLFLIG 290
Query: 261 KEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEVKY 300
+ P+++ ++L + + +Y++ A L L + K+
Sbjct: 291 QGMEKPEVIDELLNIEKNPQKPQYSM-AVEFPLVLYDCKF 329
>UNIPROTKB|Q3SX07 [details] [associations]
symbol:PUS3 "tRNA pseudouridine(38/39) synthase"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0005634 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 EMBL:BC104569 IPI:IPI00688075
RefSeq:NP_001029684.1 UniGene:Bt.33259 ProteinModelPortal:Q3SX07
STRING:Q3SX07 PRIDE:Q3SX07 GeneID:515824 KEGG:bta:515824 CTD:83480
HOGENOM:HOG000199032 HOVERGEN:HBG053769 InParanoid:Q3SX07
OrthoDB:EOG4B2SXG NextBio:20872016 Uniprot:Q3SX07
Length = 481
Score = 172 (65.6 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 79/280 (28%), Positives = 119/280 (42%)
Query: 53 LVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLE-REDLRLVGASRTDTGVHAWGQ 110
L IAY G Y G+ Q + TI+ + +AL + +E R+ RTD GV A+GQ
Sbjct: 67 LKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVENRQTSNYHRCGRTDKGVSAFGQ 126
Query: 111 VAHF-ITPFSYDGLESIHA-----------------ALNGLLPPDIRVREISAAVPEFHA 152
V + G +S H LN +LPPDIRV + F A
Sbjct: 127 VISLDLRSHIPKGRDSEHFNLKNEVNDVATEIRYTHILNRVLPPDIRVLAWAPVETSFSA 186
Query: 153 RFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQR 212
RFS + Y Y F R L+ M AA+ +VG HDF +
Sbjct: 187 RFSCLERTYRYF---------FPRA-------NLDIVTMNYAAQKYVGTHDFRNLCKMDV 230
Query: 213 NDRLLNPVKSVFRFDVIEMGA------------LLQLEVEGSGFLYRQVRNMVALLLQIG 260
+ ++N +++ V +G L Q EV G FLY QVR M+A+L IG
Sbjct: 231 ANGVINFQRTILSAQVQRVGQNLGEEGWQEPFQLCQFEVTGQAFLYHQVRCMMAVLFLIG 290
Query: 261 KEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEVKY 300
+ P+++ ++L + + +Y++ A L L + K+
Sbjct: 291 QGMEKPEVIDELLNIEKNPQKPQYSM-AVEFPLVLYDCKF 329
>UNIPROTKB|J3KTG4 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9606
"Homo sapiens" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
EMBL:AL139287 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.30.70.660 PANTHER:PTHR11142
HGNC:HGNC:26914 ChiTaRS:PUSL1 Ensembl:ENST00000467712
Uniprot:J3KTG4
Length = 126
Score = 148 (57.2 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 46/124 (37%), Positives = 65/124 (52%)
Query: 191 MRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI--EMGALL-----------QL 237
M++AA++ +G HDFSAF + + +PV+++ R V + L+ L
Sbjct: 4 MQEAAQHLLGTHDFSAFQSA--GSPVPSPVRTLRRVSVSPGQASPLVTPEESRKLRFWNL 61
Query: 238 EVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS-APPHGLCLV 296
E E FLYRQVR M A+L+ +G A+ P V IL +QD L K+ AP HGL L
Sbjct: 62 EFESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILESQD--PLGKHQTRVAPAHGLFLK 119
Query: 297 EVKY 300
V Y
Sbjct: 120 SVLY 123
>TAIR|locus:2009021 [details] [associations]
symbol:AT1G34150 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0006730
"one-carbon metabolic process" evidence=RCA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 KO:K01855 eggNOG:COG0101
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000199032 EMBL:AF360187 EMBL:AY040002
IPI:IPI00521240 RefSeq:NP_564438.1 UniGene:At.19010
ProteinModelPortal:Q9C5K6 SMR:Q9C5K6 STRING:Q9C5K6 PaxDb:Q9C5K6
PRIDE:Q9C5K6 EnsemblPlants:AT1G34150.1 GeneID:840314
KEGG:ath:AT1G34150 TAIR:At1g34150 InParanoid:Q9C5K6 OMA:KFIGEHD
PhylomeDB:Q9C5K6 ProtClustDB:CLSN2688258 ArrayExpress:Q9C5K6
Genevestigator:Q9C5K6 Uniprot:Q9C5K6
Length = 446
Score = 166 (63.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 77/263 (29%), Positives = 114/263 (43%)
Query: 53 LVIAYDGTRYAGWQFQTS-PPTIQCIVEKALIRVTKL--EREDLRLVGASRTDTGVHAWG 109
L I Y G R+ G+ + P+I+ V KAL R L +++D RTD GV + G
Sbjct: 94 LKIMYFGKRFYGFSAEAQMEPSIESEVFKALERTRLLVGDKKDSCYSRCGRTDKGVSSTG 153
Query: 110 QV-AHFI-----TPFSYDGLESIHA------------ALNGLLPPDIRVREISAAVPEFH 151
QV A F+ +P D ++ LN LP DIRV S A +FH
Sbjct: 154 QVIALFLRSRLKSPPG-DSKAQVNGRTGERPEYDYVRVLNRALPDDIRVIGWSPAPIDFH 212
Query: 152 ARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQ 211
ARFS ++ Y Y + LN + M A + F+G+HDF F +
Sbjct: 213 ARFSCYAREYKYFFWRQ----------------NLNLSAMDFAGKKFIGEHDFRNFCKMD 256
Query: 212 RNDRLLNPVKSVFRFDVI------EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIP 265
+ + F F+V E L + GS FL+ Q+R MVA+L IG+
Sbjct: 257 VANVHCYTRRVTF-FEVSPCQNSHEGDQLCTFTMRGSAFLWHQIRCMVAVLFMIGQGVES 315
Query: 266 PDIVPKILATQDRKELAKYALSA 288
D++ +L T+ +Y L++
Sbjct: 316 VDVIDTLLDTKKTPRKPQYLLAS 338
>UNIPROTKB|G4MKS9 [details] [associations]
symbol:MGG_16154 "tRNA-pseudouridine synthase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723 GO:GO:0008033
EMBL:CM001231 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
RefSeq:XP_003709381.1 ProteinModelPortal:G4MKS9
EnsemblFungi:MGG_16154T0 GeneID:12984466 KEGG:mgr:MGG_16154
Uniprot:G4MKS9
Length = 694
Score = 97 (39.2 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 33/112 (29%), Positives = 52/112 (46%)
Query: 130 LNGLLPPDIRVRE-ISAAVPEFHARFSAKSKIYHY----KIYND--AVMDPFQRHYAYHS 182
LN +LP DIRV P F AR S + Y Y I++ A +D + S
Sbjct: 319 LNAVLPVDIRVLAWCPNPPPGFSARHSCHERQYRYFFTQPIFSPVPARLDGVMGYKEPGS 378
Query: 183 VYK---LNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
+K L+ MR+AA F G+HDF F + + ++ N + + ++E+
Sbjct: 379 THKDGYLDLDAMREAARLFEGEHDFRNFCKIDASKQISNFKRLIREASIVEV 430
Score = 81 (33.6 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 239 VEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKIL 273
V GS FL+ Q+R+M+A+L +G+ P IV ++L
Sbjct: 463 VRGSAFLWHQIRHMIAVLFLVGQRLEKPSIVSELL 497
Score = 68 (29.0 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 53 LVIAYDGTRYAGWQFQTSP--PTIQCIVEKALIRVTKL----ERE----DLRLVGAS--- 99
L +AY G Y G ++Q S P I+ + KAL++ + ER+ D ++ S
Sbjct: 170 LKLAYLGKNYNGLEYQPSGALPAIEEELWKALVKTCLIFPDPERDPSEVDFKVCDYSKCG 229
Query: 100 RTDTGVHAWGQV 111
RTD GV A+GQV
Sbjct: 230 RTDRGVSAFGQV 241
>UNIPROTKB|F1RFR2 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0005730 GO:GO:0003677 GO:GO:0045944
GO:GO:0003723 GO:GO:0005667 GO:GO:0030374 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
OMA:CDARTYF EMBL:CU469318 Ensembl:ENSSSCT00000010680 Uniprot:F1RFR2
Length = 433
Score = 153 (58.9 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 75/275 (27%), Positives = 119/275 (43%)
Query: 47 PGFKWRLVIAYDGTRYAGWQFQTSPP---TIQCIVEKALIR---VTKLEREDLRLVG--- 97
P K L++AY G Y G Q TI+ + AL+R + + ED+R +
Sbjct: 88 PKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQR 147
Query: 98 ASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAK 157
+RTD GV A GQV D LE I N LP IR+ + F+++
Sbjct: 148 CARTDKGVSAAGQVVSLKVWLIDDILEKI----NSHLPSHIRILGLKRVTGGFNSKNKCD 203
Query: 158 SKIYHYKIYNDAVMDPFQRHYAYHSVYKLNT-TLMR--QAAEYFVGKHDFSAFVNVQ--R 212
++ Y Y + A + H Y+L+T TL R + + G H+F F + + R
Sbjct: 204 ARTYFYMLPTFAFAH--KDHDVQDETYRLSTETLQRVNRLLACYKGTHNFHNFTSQKGPR 261
Query: 213 NDRLLNPVKSVFRFD--VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVP 270
+ +F + V E ++V+G F+ Q+R MV L++ I K P ++
Sbjct: 262 EPSARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAIIKGYAPESVLE 321
Query: 271 KILATQDRKELAKYALSAPPHGLCLVEV---KYNE 302
+ + + ++ K AP GL L V KYN+
Sbjct: 322 RSWG-EAKVDVPK----APGLGLVLERVHFEKYNQ 351
>FB|FBgn0038811 [details] [associations]
symbol:CG4159 species:7227 "Drosophila melanogaster"
[GO:0004730 "pseudouridylate synthase activity" evidence=ISS]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 EMBL:AE014297 GO:GO:0003723 GO:GO:0008033
GO:GO:0016829 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706 OMA:CDARTYF
RefSeq:NP_001163664.1 UniGene:Dm.27944 ProteinModelPortal:E1JIR1
SMR:E1JIR1 EnsemblMetazoa:FBtr0302323 GeneID:42440
KEGG:dme:Dmel_CG4159 FlyBase:FBgn0038811 PhylomeDB:E1JIR1
GenomeRNAi:42440 NextBio:828799 Bgee:E1JIR1 Uniprot:E1JIR1
Length = 442
Score = 153 (58.9 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 72/286 (25%), Positives = 123/286 (43%)
Query: 32 EGTNNTVKPPTD--DSFPGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIR---VT 86
+ N + P D D K ++++Y G Y G Q TI+ + KA+++ +T
Sbjct: 83 DAANGVKRAPFDPADRIKRKKSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWIT 142
Query: 87 KLEREDLRLV---GASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREI 143
+ E +++ A+RTD GV A QV P D LE A N LP IR+ +
Sbjct: 143 EDSFEQIQISCFQRAARTDKGVSAARQVCSVKLPEELD-LE----AFNADLPQQIRLFGV 197
Query: 144 SAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYA-YHSVYKLNTTLMRQAAE---YFV 199
F+A+ ++ Y Y + A PF+ H ++++ L+++ E +
Sbjct: 198 ERVTKGFNAKDQCNARTYTYTLPTVAFA-PFEEKVDDVHDTFRISPELLQKVKETLKLYE 256
Query: 200 GKHDFSAFVNVQR-----NDRLLNPVKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVA 254
G +F F + + + R + S F + + L+V+G F+ Q+R MV
Sbjct: 257 GTKNFHNFTSKKSFLDPSSKRFIMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQIRKMVG 316
Query: 255 LLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEVKY 300
L + I + + + L T++R +L AP GL L V Y
Sbjct: 317 LAIAIVRGNTTAATLERAL-TEERLDLPM----APGLGLVLDTVHY 357
>SGD|S000003031 [details] [associations]
symbol:PUS2 "Mitochondrial tRNA:pseudouridine synthase"
species:4932 "Saccharomyces cerevisiae" [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IGI;IMP]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IGI;IMP] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 SGD:S000003031 GO:GO:0005739 EMBL:BK006941
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
RefSeq:NP_011452.4 GeneID:852817 KEGG:sce:YGL063W KO:K15452
RefSeq:NP_011456.5 GeneID:852821 KEGG:sce:YGL059W eggNOG:COG0101
HOGENOM:HOG000213984 OrthoDB:EOG48KVMJ Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 EMBL:X80674 EMBL:Z72585 PIR:S64067
ProteinModelPortal:P53167 SMR:P53167 DIP:DIP-5022N MINT:MINT-499274
STRING:P53167 EnsemblFungi:YGL063W CYGD:YGL063w OMA:CFISSES
BioCyc:MetaCyc:MONOMER-16706 NextBio:972357 Genevestigator:P53167
GermOnline:YGL063W Uniprot:P53167
Length = 370
Score = 112 (44.5 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 37/127 (29%), Positives = 57/127 (44%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDL------RLVGASRTDTGVH 106
+++ Y G+ Y G Q+ TI+ + L V + E+ + A+RTD GVH
Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVH 60
Query: 107 AWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIY 166
A + D + A LN LPP+IRV I +F+AR + S+ Y Y I
Sbjct: 61 AMLNLLSLKITLREDTV----AKLNAALPPEIRVWGIQPVNKKFNARSACDSRWYQYLIP 116
Query: 167 NDAVMDP 173
++ P
Sbjct: 117 EFILIGP 123
Score = 82 (33.9 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 29/104 (27%), Positives = 44/104 (42%)
Query: 194 AAEYFVGKHDFSAFVN--VQRNDRLLNPVKSVFRFDVIEMGALLQLEVEGSGFLYRQVRN 251
A + +VG H+F F + + +K V G + + + G F+ Q+R
Sbjct: 206 AMQEYVGTHNFHNFTTGKLWGDPSAQRHIKKVV-VSQASPGWIC-VRIHGQSFMLHQIRR 263
Query: 252 MVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLCL 295
MVAL + + +PP+IV RK Y AP GL L
Sbjct: 264 MVALAVLAARCQLPPNIVRNYFNAGPRK----YIPRAPAQGLLL 303
>POMBASE|SPBC887.11 [details] [associations]
symbol:pus2 "tRNA pseudouridine synthase Pus2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0009982 "pseudouridine synthase activity" evidence=ISO]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PomBase:SPBC887.11 GO:GO:0005634
GO:GO:0046872 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 KO:K15452
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 PIR:T40736 RefSeq:NP_596485.1
ProteinModelPortal:O94295 EnsemblFungi:SPBC887.11.1 GeneID:2541236
KEGG:spo:SPBC887.11 OrthoDB:EOG4M952K NextBio:20802348
Uniprot:O94295
Length = 451
Score = 106 (42.4 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 34/128 (26%), Positives = 58/128 (45%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQ----CIVEK-ALIRVTKLEREDLRLVGASRTDTGVHA 107
+++ Y G Y G Q TI+ +++K ++ ++ E L + A+RTD GVH
Sbjct: 43 ILLGYSGYGYHGIQINNPLKTIEGDVVAVLKKLGYLKTNNIDAEHLCIARAARTDKGVHT 102
Query: 108 WGQVA--HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKI 165
+ + D + + LN L IRV + A F+ R S +S+ Y Y I
Sbjct: 103 LRNLISLNLFVDKPLD-ISLLKTELNEALCSQIRVWSVFPAPKYFNPRISCESRTYEYLI 161
Query: 166 YNDAVMDP 173
+ A++ P
Sbjct: 162 PSFALLPP 169
Score = 89 (36.4 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 30/133 (22%), Positives = 61/133 (45%)
Query: 177 HYAYHSVYKLNTT---LMRQAAEYFVGKHDFSAFVNVQ-----RNDRLLNPVKSVFRFDV 228
+Y Y + Y++ +++Q + + G+H+F F N R + V F V
Sbjct: 261 YYCYMN-YRIKEDRLKVLQQLLKKYEGRHNFHNFTVTDDSTSPSNYRFIESVTCGTPF-V 318
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E + + ++G+ F+ Q+R M+A +L I + P ++ K ++K +
Sbjct: 319 YENWEWIPVTIKGNSFMLNQIRKMMAHVLMIIRSCAPTGLIDKAFDPNITMNISK----S 374
Query: 289 PPHGLCLVEVKYN 301
P H L L ++K++
Sbjct: 375 PGHVLLLKDIKFS 387
>UNIPROTKB|J9NVH5 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 EMBL:AAEX03014587
Ensembl:ENSCAFT00000047970 Uniprot:J9NVH5
Length = 398
Score = 147 (56.8 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 77/277 (27%), Positives = 121/277 (43%)
Query: 47 PGFKWRLVIAYDGTRYAGWQFQTSPP---TIQCIVEKALIR---VTKLEREDLRLVG--- 97
P K L++AY G Y G Q TI+ + AL++ + + ED+R +
Sbjct: 59 PKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQSGCIPENHGEDMRKMSFQR 118
Query: 98 ASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAK 157
+RTD GV A GQV D LE I N LPP IR+ + F+++
Sbjct: 119 CARTDKGVSAAGQVVSLKVWLIDDILEKI----NSHLPPHIRILGLKRVTGGFNSKNKCD 174
Query: 158 SKIYHYKIYNDAVMDPFQRHYAYHSVYKLNT-TLMRQAA--EYFVGKHDFSAFVNVQRND 214
++ Y Y + A + H Y+L+ TL R + G H+F F + Q+
Sbjct: 175 ARTYFYMLPTFAFAH--KDHDVQDESYRLSAETLQRVNGLLACYKGTHNFHNFTS-QKGP 231
Query: 215 RLLNP---VKSVFRFD--VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIV 269
+ + + +F + V E ++V+G F+ Q+R MV LL+ I K P ++
Sbjct: 232 QEASARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLLVAIVKGYAPESVL 291
Query: 270 PKILATQDRK-ELAKYALSAPPHGLCLVEV---KYNE 302
+ + D K ++ K AP GL L V KYN+
Sbjct: 292 ER--SWGDAKVDVPK----APGLGLVLERVHFEKYNQ 322
>UNIPROTKB|E2QW32 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 OMA:CDARTYF EMBL:AAEX03014587
Ensembl:ENSCAFT00000010378 Uniprot:E2QW32
Length = 438
Score = 147 (56.8 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 77/277 (27%), Positives = 121/277 (43%)
Query: 47 PGFKWRLVIAYDGTRYAGWQFQTSPP---TIQCIVEKALIR---VTKLEREDLRLVG--- 97
P K L++AY G Y G Q TI+ + AL++ + + ED+R +
Sbjct: 92 PKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQSGCIPENHGEDMRKMSFQR 151
Query: 98 ASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAK 157
+RTD GV A GQV D LE I N LPP IR+ + F+++
Sbjct: 152 CARTDKGVSAAGQVVSLKVWLIDDILEKI----NSHLPPHIRILGLKRVTGGFNSKNKCD 207
Query: 158 SKIYHYKIYNDAVMDPFQRHYAYHSVYKLNT-TLMRQAA--EYFVGKHDFSAFVNVQRND 214
++ Y Y + A + H Y+L+ TL R + G H+F F + Q+
Sbjct: 208 ARTYFYMLPTFAFAH--KDHDVQDESYRLSAETLQRVNGLLACYKGTHNFHNFTS-QKGP 264
Query: 215 RLLNP---VKSVFRFD--VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIV 269
+ + + +F + V E ++V+G F+ Q+R MV LL+ I K P ++
Sbjct: 265 QEASARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLLVAIVKGYAPESVL 324
Query: 270 PKILATQDRK-ELAKYALSAPPHGLCLVEV---KYNE 302
+ + D K ++ K AP GL L V KYN+
Sbjct: 325 ER--SWGDAKVDVPK----APGLGLVLERVHFEKYNQ 355
>ASPGD|ASPL0000001573 [details] [associations]
symbol:AN6165 species:162425 "Emericella nidulans"
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=RCA] [GO:0004730 "pseudouridylate synthase activity"
evidence=RCA] [GO:0005634 "nucleus" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0031120 "snRNA pseudouridine synthesis"
evidence=IEA] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 EMBL:BN001301 EMBL:AACD01000105
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101
HOGENOM:HOG000213984 KO:K06173 OMA:IRKMISM OrthoDB:EOG48KVMJ
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 RefSeq:XP_663769.1 ProteinModelPortal:Q5AZW5
STRING:Q5AZW5 EnsemblFungi:CADANIAT00006845 GeneID:2871138
KEGG:ani:AN6165.2 Uniprot:Q5AZW5
Length = 574
Score = 121 (47.7 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 43/138 (31%), Positives = 60/138 (43%)
Query: 47 PGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIR---VTKLEREDLR---LVGASR 100
P K ++I Y GT Y G Q T+ TI+ + A + ++K D + LV +R
Sbjct: 77 PKKKVAVLIGYSGTGYKGMQLSTTEKTIEGELFTAFVAAGAISKANAADPKKSSLVRCAR 136
Query: 101 TDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKI 160
TD GVHA G + + D I +N L P IRV I A F + S+I
Sbjct: 137 TDKGVHAAGNIVS-LKLIVED--PDIVQKINDHLSPQIRVWGILVANKSFSSYQMCDSRI 193
Query: 161 YHYKIYNDAVMDPFQRHY 178
Y Y I + + P Y
Sbjct: 194 YEYLIPSHCFLPPHPNTY 211
Score = 67 (28.6 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 191 MRQAAEYFVGKHDFSAF-VNVQ-RNDRLLNPVKSVFRFD----VIEMGALLQLEVEGSGF 244
++QA + +VG +F + + Q R+ +KS F+ + +I+ L L+V G F
Sbjct: 347 IQQALDKYVGTKNFYNYTIQKQYRDPSAKRHIKS-FKLNPEPIIIDGTEWLSLKVHGQSF 405
Query: 245 LYRQVRNMVALLLQI 259
+ Q+R MVA+ +
Sbjct: 406 MMHQIRKMVAMATMV 420
>FB|FBgn0083976 [details] [associations]
symbol:CG34140 species:7227 "Drosophila melanogaster"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 EMBL:AE014296 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
GeneTree:ENSGT00510000048520 EMBL:BT088434 RefSeq:NP_001036574.1
UniGene:Dm.21318 SMR:Q0E8K6 STRING:Q0E8K6
EnsemblMetazoa:FBtr0110975 GeneID:4379908 KEGG:dme:Dmel_CG34140
FlyBase:FBgn0083976 InParanoid:Q0E8K6 OMA:HHDFSSF OrthoDB:EOG4CNP7D
NextBio:855816 Uniprot:Q0E8K6
Length = 306
Score = 89 (36.4 bits), Expect = 5.8e-07, Sum P(3) = 5.8e-07
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 237 LEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLV 296
+E+ FLY+QVR +V L+ +G I + ++L + L AP GL L
Sbjct: 238 IEIRAKSFLYKQVRRIVGALIALGNGRIDERCLYQMLTVPSKNSWDHRVLLAPACGLYLC 297
Query: 297 EVKYNE 302
V Y E
Sbjct: 298 RVHYRE 303
Score = 69 (29.3 bits), Expect = 5.8e-07, Sum P(3) = 5.8e-07
Identities = 38/131 (29%), Positives = 55/131 (41%)
Query: 49 FKWRLVIAYDGTRYAGWQ-----FQTS---PPTIQCIVEKALIRVTKLEREDLRLVGASR 100
+++ L I+Y GT + G Q + S +IQ +E AL +V E + V +SR
Sbjct: 2 YRYLLNISYIGTTFRGIQKTVNKLEQSRLDTKSIQGCLELAL-QVFHPTNE-IHTVLSSR 59
Query: 101 TDTGVHAWGQVAHFIT------PFSYDGLESI-HAALNGLLPPDIRVREISAAVPEFHAR 153
TD GVHA P+ L + + LN P IRV FH R
Sbjct: 60 TDAGVHALHSTVQVDLERPNGQPYDTTILTGVLNRTLNKQRLP-IRVLSSKLVANSFHCR 118
Query: 154 FSAKSKIYHYK 164
+ A + Y Y+
Sbjct: 119 YDAIGRTYLYR 129
Score = 60 (26.2 bits), Expect = 5.8e-07, Sum P(3) = 5.8e-07
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 191 MRQAAEYFVGKHDFSAFVNVQRNDRLLN-PVKSVFRFDVIEM 231
++ AA F+G HDF F++V R + P+ +V + D I +
Sbjct: 173 VQAAARMFIGVHDFRTFMSVSRQKVCRDHPMFTVRKIDEINI 214
>DICTYBASE|DDB_G0290987 [details] [associations]
symbol:pus1 "tRNA pseudouridylate synthase"
species:44689 "Dictyostelium discoideum" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 dictyBase:DDB_G0290987
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 EMBL:AAFI02000174 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 RefSeq:XP_635437.1 ProteinModelPortal:Q54FA0
EnsemblProtists:DDB0231224 GeneID:8627937 KEGG:ddi:DDB_G0290987
InParanoid:Q54FA0 OMA:VEMVSIN Uniprot:Q54FA0
Length = 596
Score = 124 (48.7 bits), Expect = 5.9e-07, Sum P(3) = 5.9e-07
Identities = 40/134 (29%), Positives = 58/134 (43%)
Query: 36 NTVKPPTDDSFPGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRL 95
N K TD+S K +++ Y GT YAG Q T++ +E AL R + +++
Sbjct: 128 NKTKITTDESRKK-KVAIILGYSGTNYAGMQKNPGLKTVEEELEHALFRTGGISPDNMYY 186
Query: 96 ------VGASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPE 149
+ +RTD GV A V E + ALN LP DI V I
Sbjct: 187 QQKVDWIRCARTDKGVSAIRNVVSLKMEMGPPDFEGMKIALNKELPKDITVFHIMRVNNS 246
Query: 150 FHARFSAKSKIYHY 163
FHA+ + ++ Y Y
Sbjct: 247 FHAKNAVDARSYIY 260
Score = 64 (27.6 bits), Expect = 5.9e-07, Sum P(3) = 5.9e-07
Identities = 16/83 (19%), Positives = 40/83 (48%)
Query: 189 TLMRQAAEYFVGKHDFSAFVN-VQRND-RLLNPVKSVFRFD--VIEMGALLQLEVEGSGF 244
+++ + +++G H F + + + ND + + S + V+E ++ + V G F
Sbjct: 302 SILNKVLSFYLGNHRFHNYTSRKESNDVSVFRKIHSFVCSEPFVLEGVEMVSINVVGESF 361
Query: 245 LYRQVRNMVALLLQIGKEAIPPD 267
+ Q+R M+ L+ ++ + D
Sbjct: 362 MLHQIRKMIGCLISFIRKGMFED 384
Score = 37 (18.1 bits), Expect = 5.9e-07, Sum P(3) = 5.9e-07
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 261 KEAIPPDIVPKILATQDRKEL 281
K+ PP P ++ ++R+EL
Sbjct: 498 KKIRPPSTNPSRMSKRERREL 518
>UNIPROTKB|E1BDL3 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0005730 GO:GO:0003677 GO:GO:0045944
GO:GO:0003723 GO:GO:0005667 GO:GO:0030374 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 KO:K06173 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 CTD:80324 OMA:CDARTYF
EMBL:DAAA02044957 IPI:IPI00698653 RefSeq:XP_002694500.1
RefSeq:XP_593895.2 UniGene:Bt.7818 Ensembl:ENSBTAT00000017270
GeneID:515808 KEGG:bta:515808 NextBio:20872010 Uniprot:E1BDL3
Length = 433
Score = 141 (54.7 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 73/275 (26%), Positives = 118/275 (42%)
Query: 47 PGFKWRLVIAYDGTRYAGWQFQTSPP---TIQCIVEKALIR---VTKLEREDLRLVG--- 97
P K L++AY G Y G Q TI+ + AL+R + + ED+R +
Sbjct: 88 PKRKIVLLMAYSGKGYHGMQRNVGSSKFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQR 147
Query: 98 ASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAK 157
+RTD GV A GQV D LE I N LP IR+ + F+++
Sbjct: 148 CARTDKGVSAAGQVVSLKVWLIDDILEKI----NSHLPSHIRILGLKRVTGGFNSKNKCD 203
Query: 158 SKIYHYKIYNDAVMDPFQRHYAYHSVYKLNT-TLMR--QAAEYFVGKHDFSAFVNVQ--R 212
++ Y Y + A + H + Y+L+ TL R + + G H+F F + +
Sbjct: 204 ARTYVYMLPTFAFAH--KDHDSQDETYRLSAETLGRVNRLLACYKGTHNFHNFTSQKGPH 261
Query: 213 NDRLLNPVKSVFRFD--VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVP 270
+ +F + V E ++V+G F+ Q+R MV L++ I K P ++
Sbjct: 262 EPSARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAIVKGYAPESVLE 321
Query: 271 KILATQDRKELAKYALSAPPHGLCLVEV---KYNE 302
+ + + ++ K AP GL L V KYN+
Sbjct: 322 RCWG-EAKVDVPK----APGLGLVLERVHFEKYNQ 351
>UNIPROTKB|G8JLB3 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0005730
GO:GO:0003677 GO:GO:0045944 GO:GO:0003723 GO:GO:0005667
GO:GO:0030374 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
EMBL:AC131009 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 HGNC:HGNC:15508 ChiTaRS:PUS1
ProteinModelPortal:G8JLB3 SMR:G8JLB3 PRIDE:G8JLB3
Ensembl:ENST00000322060 Bgee:G8JLB3 Uniprot:G8JLB3
Length = 384
Score = 140 (54.3 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 71/276 (25%), Positives = 116/276 (42%)
Query: 47 PGFKWRLVIAYDGTRYAGWQFQTSPP---TIQCIVEKALIR---VTKLEREDLRLVG--- 97
P K L++AY G Y G Q TI+ + AL+R + + ED+R +
Sbjct: 54 PKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQR 113
Query: 98 ASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAK 157
+RTD GV A GQV D LE I N LP IR+ + F+++
Sbjct: 114 CARTDKGVSAAGQVVSLKVWLIDDILEKI----NSHLPSHIRILGLKRVTGGFNSKNRCD 169
Query: 158 SKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEY---FVGKHDFSAFVNVQRND 214
++ Y Y + A R Y+L+ ++Q + G H+F F + Q+
Sbjct: 170 ARTYCYLLPTFAFAHK-DRD-VQDETYRLSAETLQQVNRLLACYKGTHNFHNFTS-QKGP 226
Query: 215 RLLNPVKSVFRF----DVIEMGA-LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIV 269
+ + + + + G + V+G F+ Q+R MV L++ I K P ++
Sbjct: 227 QDPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVL 286
Query: 270 PKILATQDRKELAKYALSAPPHGLCLVEV---KYNE 302
+ T+ + ++ K AP GL L V KYN+
Sbjct: 287 ERSWGTE-KVDVPK----APGLGLVLERVHFEKYNQ 317
>UNIPROTKB|Q9Y606 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase A, mitochondrial"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005667 "transcription
factor complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0004730
"pseudouridylate synthase activity" evidence=NAS] [GO:0008033 "tRNA
processing" evidence=NAS] [GO:0005634 "nucleus" evidence=NAS]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0005739
GO:GO:0005634 GO:GO:0005730 GO:GO:0003677 GO:GO:0045944
GO:GO:0003723 GO:GO:0005667 GO:GO:0008033 GO:GO:0030374
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0004730 GO:GO:0031119
BRENDA:5.4.99.12 eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
Orphanet:2598 EMBL:AF318369 EMBL:AK074659 EMBL:AK292242
EMBL:BC002901 EMBL:BC009505 EMBL:BC019320 EMBL:AF116238
IPI:IPI00001716 IPI:IPI00619930 RefSeq:NP_001002019.1
RefSeq:NP_001002020.1 RefSeq:NP_079491.2 UniGene:Hs.592004
ProteinModelPortal:Q9Y606 SMR:Q9Y606 STRING:Q9Y606
PhosphoSite:Q9Y606 DMDM:114152895 PaxDb:Q9Y606 PRIDE:Q9Y606
DNASU:80324 Ensembl:ENST00000376649 Ensembl:ENST00000440818
Ensembl:ENST00000443358 GeneID:80324 KEGG:hsa:80324 UCSC:uc001ujf.3
CTD:80324 GeneCards:GC12P132413 HGNC:HGNC:15508 HPA:HPA051636
MIM:600462 MIM:608109 neXtProt:NX_Q9Y606 PharmGKB:PA34047
HOGENOM:HOG000031229 HOVERGEN:HBG000489 InParanoid:Q9Y606
OMA:CDARTYF OrthoDB:EOG4QRH44 ChiTaRS:PUS1 GenomeRNAi:80324
NextBio:70847 ArrayExpress:Q9Y606 Bgee:Q9Y606 CleanEx:HS_PUS1
Genevestigator:Q9Y606 GermOnline:ENSG00000177192 Uniprot:Q9Y606
Length = 427
Score = 140 (54.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 71/276 (25%), Positives = 116/276 (42%)
Query: 47 PGFKWRLVIAYDGTRYAGWQFQTSPP---TIQCIVEKALIR---VTKLEREDLRLVG--- 97
P K L++AY G Y G Q TI+ + AL+R + + ED+R +
Sbjct: 82 PKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQR 141
Query: 98 ASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAK 157
+RTD GV A GQV D LE I N LP IR+ + F+++
Sbjct: 142 CARTDKGVSAAGQVVSLKVWLIDDILEKI----NSHLPSHIRILGLKRVTGGFNSKNRCD 197
Query: 158 SKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEY---FVGKHDFSAFVNVQRND 214
++ Y Y + A R Y+L+ ++Q + G H+F F + Q+
Sbjct: 198 ARTYCYLLPTFAFAHK-DRD-VQDETYRLSAETLQQVNRLLACYKGTHNFHNFTS-QKGP 254
Query: 215 RLLNPVKSVFRF----DVIEMGA-LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIV 269
+ + + + + G + V+G F+ Q+R MV L++ I K P ++
Sbjct: 255 QDPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVL 314
Query: 270 PKILATQDRKELAKYALSAPPHGLCLVEV---KYNE 302
+ T+ + ++ K AP GL L V KYN+
Sbjct: 315 ERSWGTE-KVDVPK----APGLGLVLERVHFEKYNQ 345
>ZFIN|ZDB-GENE-030131-9433 [details] [associations]
symbol:pus3 "pseudouridylate synthase 3"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 ZFIN:ZDB-GENE-030131-9433 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG EMBL:BC049516 IPI:IPI00509994
RefSeq:NP_956361.1 UniGene:Dr.79340 ProteinModelPortal:Q7ZW97
PRIDE:Q7ZW97 GeneID:337487 KEGG:dre:337487 InParanoid:Q7ZW97
NextBio:20812266 ArrayExpress:Q7ZW97 Bgee:Q7ZW97 Uniprot:Q7ZW97
Length = 460
Score = 140 (54.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 69/275 (25%), Positives = 121/275 (44%)
Query: 38 VKPPTDDS-FPGFKWRLVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKL--EREDL 93
V+ P D S P L +AY G +Y G+ Q + T++ + +AL++ TKL +R+
Sbjct: 46 VEKPFDFSAHPRRHVALRLAYLGWQYQGFAVQENTDNTVEARLFEALLK-TKLIQDRQTS 104
Query: 94 RLVGASRTDTGVHAWGQVAHF-ITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHA 152
RTD GV A+ QV + Y G L +P D+ V+ ++A +
Sbjct: 105 CYHRCGRTDKGVSAFSQVISIDLRSTQYGG------GLGVTVPADVDVKGKTSADELPYV 158
Query: 153 RFSAKSKIYHYKIYN--------DAVMDPFQRHYAYHSVY-KLNTTLMRQAAEYFVGKHD 203
+ + + +I A D R Y Y+ L+ LM +AA+ + G HD
Sbjct: 159 KILNRVLPHDIRILQWAPVESGFSARFDCQSRTYRYYFPRGDLDLELMAEAAKRYEGTHD 218
Query: 204 FSAFVNVQRNDRLLNPVKSVFRFDVI-----------EMGALLQLEVEGSGFLYRQVRNM 252
F + + +L +++ V + L +V+G LY QVR M
Sbjct: 219 FRNLCKMDVGNGVLQFQRTILSASVQPAQLPHPSVHNDPHQLFVFQVKGLALLYHQVRCM 278
Query: 253 VALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ALLL IG++ P+++ ++L + +Y+++
Sbjct: 279 MALLLLIGQKLEAPEVIDQLLDVEKNPRKPQYSMA 313
>SGD|S000006133 [details] [associations]
symbol:PUS1 "tRNA:pseudouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IPI]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IDA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IDA]
[GO:0031120 "snRNA pseudouridine synthesis" evidence=IMP]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 SGD:S000006133 GO:GO:0005634
GO:GO:0003723 EMBL:BK006949 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031120 GO:GO:0031119 eggNOG:COG0101 HOGENOM:HOG000213984
KO:K06173 OrthoDB:EOG48KVMJ Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 EMBL:X80673 EMBL:Z73568
PIR:S65231 RefSeq:NP_015112.1 ProteinModelPortal:Q12211
DIP:DIP-5344N IntAct:Q12211 MINT:MINT-513680 STRING:Q12211
PaxDb:Q12211 PeptideAtlas:Q12211 EnsemblFungi:YPL212C GeneID:855889
KEGG:sce:YPL212C CYGD:YPL212c GeneTree:ENSGT00510000047706
OMA:TEWISIT NextBio:980559 Genevestigator:Q12211 GermOnline:YPL212C
Uniprot:Q12211
Length = 544
Score = 139 (54.0 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 45/156 (28%), Positives = 68/156 (43%)
Query: 41 PTDDSFPGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIR---VTKLEREDLRLVG 97
P + P K +++ Y GT Y G Q+ PTI+ + KA + ++K DL+ G
Sbjct: 67 PKEPRLPKRKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNG 126
Query: 98 ---ASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARF 154
A+RTD GVHA G + + D I +N LP IRV +I F R
Sbjct: 127 FMRAARTDKGVHAGGNLIS-LKMIIED--PDIKQKINEKLPEGIRVWDIERVNKAFDCRK 183
Query: 155 SAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTL 190
S+ Y Y + +++ P Y + + T L
Sbjct: 184 MCSSRWYEYLLPTYSLIGPKPGSILYRDIEESKTEL 219
>UNIPROTKB|F1NZ90 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0005730
GO:GO:0003677 GO:GO:0045944 GO:GO:0003723 GO:GO:0005667
GO:GO:0030374 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706 OMA:CDARTYF
EMBL:AADN02034827 IPI:IPI00587879 Ensembl:ENSGALT00000003714
Uniprot:F1NZ90
Length = 405
Score = 137 (53.3 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 67/277 (24%), Positives = 120/277 (43%)
Query: 47 PGFKWRLVIAYDGTRYAGWQFQTSPP---TIQCIVEKALIR---VTKLEREDLRLVG--- 97
P K L++AY G Y G Q TI+ + AL+R + + ED++ +
Sbjct: 58 PKRKIVLLMAYSGKGYHGMQRNLGSSQFKTIEDDLVSALVRSGCIPENHGEDMKKMSFQR 117
Query: 98 ASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAK 157
+RTD GV A GQ+ D LE I N LP IR+ + F+++
Sbjct: 118 CARTDKGVSAAGQIVSLKVRLIDDILEKI----NNHLPSHIRILGLKRVTGGFNSKNKCD 173
Query: 158 SKIYHYKI------YNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQ 211
++ Y Y + + D + + ++ K+N+ L R + G H+F F + +
Sbjct: 174 ARTYAYMLPTFAFAHKDHDVQEEAHRLSRETLEKVNSLLAR-----YKGTHNFHNFTSQK 228
Query: 212 --RNDRLLNPVKSVFRFD-VIEMGA-LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPD 267
++ + ++ + + G ++V+G F+ Q+R M+ L++ I K P
Sbjct: 229 GPKDPSARRYIMEMYCGEPFVREGIEFAVIKVKGQSFMMHQIRKMIGLVIAIVKGYAPES 288
Query: 268 IVPKILATQDRKELAKYALSAPPHGLCLVEV---KYN 301
I+ + +++ ++ K AP GL L V KYN
Sbjct: 289 IIERSWG-EEKVDVPK----APGLGLVLERVHFEKYN 320
>MGI|MGI:1929237 [details] [associations]
symbol:Pus1 "pseudouridine synthase 1" species:10090 "Mus
musculus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005667 "transcription
factor complex" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IMP] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IDA;IMP]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IDA] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 MGI:MGI:1929237 GO:GO:0005739
GO:GO:0005730 GO:GO:0003677 GO:GO:0045944 GO:GO:0003723
GO:GO:0005667 GO:GO:0030374 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 BRENDA:5.4.99.12 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706 CTD:80324
HOVERGEN:HBG000489 OrthoDB:EOG4QRH44 EMBL:AF116237 EMBL:AF269250
EMBL:AB041563 EMBL:AK089258 EMBL:AK138570 EMBL:BC021446
EMBL:BC034359 IPI:IPI00123912 IPI:IPI00621502 IPI:IPI00623093
IPI:IPI00653171 RefSeq:NP_001020733.1 RefSeq:NP_062674.2
UniGene:Mm.23528 ProteinModelPortal:Q9WU56 SMR:Q9WU56 STRING:Q9WU56
PhosphoSite:Q9WU56 PRIDE:Q9WU56 DNASU:56361
Ensembl:ENSMUST00000031481 Ensembl:ENSMUST00000031483
Ensembl:ENSMUST00000112426 Ensembl:ENSMUST00000170468 GeneID:56361
KEGG:mmu:56361 UCSC:uc008yrm.1 UCSC:uc008yrn.1 UCSC:uc008yro.1
UCSC:uc008yrp.1 NextBio:312382 Bgee:Q9WU56 CleanEx:MM_PUS1
Genevestigator:Q9WU56 GermOnline:ENSMUSG00000029507 Uniprot:Q9WU56
Length = 423
Score = 133 (51.9 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 71/284 (25%), Positives = 120/284 (42%)
Query: 39 KPPTDDSFPGFKWRLVIAYDGTRYAGWQFQTSPP---TIQCIVEKALIR---VTKLERED 92
+PP P K L++AY G Y G Q TI+ + AL++ + + D
Sbjct: 72 EPPR--KLPKRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTD 129
Query: 93 LRLVG---ASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPE 149
+R + +RTD GV A GQV D L+ I N LP IR+ +
Sbjct: 130 MRKMSFQRCARTDKGVSAAGQVVSLKVWLIDDILDKI----NSHLPSHIRILGLKRVTGG 185
Query: 150 FHARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEY---FVGKHDFSA 206
F+++ ++ Y Y + A R S Y+L+ ++Q + G H+F
Sbjct: 186 FNSKNKCDARTYCYMLPTFAFAHK-DRDVQDES-YRLSAETLQQVNRLLACYKGTHNFHN 243
Query: 207 FVNVQRNDRLLNPVKSVFRF----DVIEMGA-LLQLEVEGSGFLYRQVRNMVALLLQIGK 261
F + Q+ R + + + + G ++V+G F+ Q+R MV L++ I K
Sbjct: 244 FTS-QKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVK 302
Query: 262 EAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEV---KYNE 302
P ++ + +++ ++ K AP GL L V KYN+
Sbjct: 303 GYAPESVLERSWG-EEKVDVPK----APGLGLVLERVHFEKYNQ 341
>RGD|1311871 [details] [associations]
symbol:Pus1 "pseudouridylate synthase 1" species:10116 "Rattus
norvegicus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA;ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005667 "transcription factor complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0008152 "metabolic process" evidence=ISO]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;ISO]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA;ISO] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 RGD:1311871 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
CTD:80324 HOGENOM:HOG000031229 HOVERGEN:HBG000489 EMBL:AC095390
IPI:IPI00190104 RefSeq:NP_001020734.1 UniGene:Rn.11475
ProteinModelPortal:Q4KM92 STRING:Q4KM92 Ensembl:ENSRNOT00000056780
GeneID:304567 KEGG:rno:304567 UCSC:RGD:1311871 NextBio:653267
ArrayExpress:Q4KM92 Genevestigator:Q4KM92
GermOnline:ENSRNOG00000037500 Uniprot:Q4KM92
Length = 423
Score = 133 (51.9 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 71/284 (25%), Positives = 120/284 (42%)
Query: 39 KPPTDDSFPGFKWRLVIAYDGTRYAGWQFQTSPP---TIQCIVEKALIR---VTKLERED 92
+PP P K L++AY G Y G Q TI+ + AL++ + + D
Sbjct: 72 EPPR--KLPKRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTD 129
Query: 93 LRLVG---ASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPE 149
+R + +RTD GV A GQV D L+ I N LP IR+ +
Sbjct: 130 MRKMSFQRCARTDKGVSAAGQVVSLKVWLIDDILDKI----NSHLPSHIRILGLKRVTGG 185
Query: 150 FHARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEY---FVGKHDFSA 206
F+++ ++ Y Y + A R S Y+L+ ++Q + G H+F
Sbjct: 186 FNSKNKCDARTYCYMLPTFAFAHK-DRDVQDES-YRLSAETLQQVNRLLGCYKGTHNFHN 243
Query: 207 FVNVQRNDRLLNPVKSVFRF----DVIEMGA-LLQLEVEGSGFLYRQVRNMVALLLQIGK 261
F + Q+ R + + + + G ++V+G F+ Q+R MV L++ I K
Sbjct: 244 FTS-QKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVK 302
Query: 262 EAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEV---KYNE 302
P ++ + +++ ++ K AP GL L V KYN+
Sbjct: 303 GYAPESVLERSWG-EEKVDVPK----APGLGLVLERVHFEKYNQ 341
>UNIPROTKB|Q4KM92 [details] [associations]
symbol:Pus1 "tRNA pseudouridine synthase A, mitochondrial"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 RGD:1311871 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
CTD:80324 HOGENOM:HOG000031229 HOVERGEN:HBG000489 EMBL:AC095390
IPI:IPI00190104 RefSeq:NP_001020734.1 UniGene:Rn.11475
ProteinModelPortal:Q4KM92 STRING:Q4KM92 Ensembl:ENSRNOT00000056780
GeneID:304567 KEGG:rno:304567 UCSC:RGD:1311871 NextBio:653267
ArrayExpress:Q4KM92 Genevestigator:Q4KM92
GermOnline:ENSRNOG00000037500 Uniprot:Q4KM92
Length = 423
Score = 133 (51.9 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 71/284 (25%), Positives = 120/284 (42%)
Query: 39 KPPTDDSFPGFKWRLVIAYDGTRYAGWQFQTSPP---TIQCIVEKALIR---VTKLERED 92
+PP P K L++AY G Y G Q TI+ + AL++ + + D
Sbjct: 72 EPPR--KLPKRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTD 129
Query: 93 LRLVG---ASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPE 149
+R + +RTD GV A GQV D L+ I N LP IR+ +
Sbjct: 130 MRKMSFQRCARTDKGVSAAGQVVSLKVWLIDDILDKI----NSHLPSHIRILGLKRVTGG 185
Query: 150 FHARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEY---FVGKHDFSA 206
F+++ ++ Y Y + A R S Y+L+ ++Q + G H+F
Sbjct: 186 FNSKNKCDARTYCYMLPTFAFAHK-DRDVQDES-YRLSAETLQQVNRLLGCYKGTHNFHN 243
Query: 207 FVNVQRNDRLLNPVKSVFRF----DVIEMGA-LLQLEVEGSGFLYRQVRNMVALLLQIGK 261
F + Q+ R + + + + G ++V+G F+ Q+R MV L++ I K
Sbjct: 244 FTS-QKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVK 302
Query: 262 EAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEV---KYNE 302
P ++ + +++ ++ K AP GL L V KYN+
Sbjct: 303 GYAPESVLERSWG-EEKVDVPK----APGLGLVLERVHFEKYNQ 341
>ZFIN|ZDB-GENE-041212-26 [details] [associations]
symbol:pus1 "pseudouridine synthase 1" species:7955
"Danio rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009451
"RNA modification" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 ZFIN:ZDB-GENE-041212-26
GO:GO:0003723 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
EMBL:CR450803 IPI:IPI00502878 Ensembl:ENSDART00000144859
Bgee:F1QWW1 Uniprot:F1QWW1
Length = 412
Score = 127 (49.8 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 64/272 (23%), Positives = 115/272 (42%)
Query: 46 FPGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEK---ALIR---VTKLEREDLRLVG-- 97
+P K L++AY G Y G Q + I ++ AL+ + + E+++ +
Sbjct: 73 YPKKKVALLMAYSGKGYYGMQRNARNSQFKTIEDELVTALVGARCIPEGHAEEMKKMSFQ 132
Query: 98 -ASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSA 156
++RTD GV A GQV +E+I +N LPP IRV F+++ +
Sbjct: 133 RSARTDKGVSAVGQVVSLKVWM----IENILEKINAHLPPQIRVLGCKRVTGGFNSKNNC 188
Query: 157 KSKIYHYKIYNDAVM--DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRND 214
++ Y Y + A D Q ++ T+ R Y G H+F F + Q+
Sbjct: 189 YARTYSYMLPTVAFSPKDYNQEDTSFRLTSDTLQTVNRLFGLY-KGTHNFHNFTS-QKGH 246
Query: 215 RLLNPVKSVFRFDVIEMGALLQLE-----VEGSGFLYRQVRNMVALLLQIGKEAIPPDIV 269
R + ++ + E +E V G F+ Q+R M+ L++ + K + ++
Sbjct: 247 RDPSAMRYITHMSCGEPFIRKDVEFAVITVRGQSFMMHQIRKMIGLVIAVVKGYVDEGVI 306
Query: 270 PKILATQDRKELAKYALSAPPHGLCLVEVKYN 301
K +++ + K AP GL L V ++
Sbjct: 307 EKSWG-EEKVGVPK----APGLGLVLERVHFD 333
>POMBASE|SPCC16C4.06c [details] [associations]
symbol:SPCC16C4.06c "tRNA pseudouridine synthase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006400 "tRNA modification"
evidence=ISO] [GO:0009982 "pseudouridine synthase activity"
evidence=ISO] [GO:0016829 "lyase activity" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PomBase:SPCC16C4.06c GO:GO:0005634 GO:GO:0005737 EMBL:CU329672
GO:GO:0003723 GO:GO:0006400 GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 OMA:CFISSES PIR:T41096 RefSeq:NP_587916.1
ProteinModelPortal:O74451 EnsemblFungi:SPCC16C4.06c.1
GeneID:2539359 KEGG:spo:SPCC16C4.06c NextBio:20800524
Uniprot:O74451
Length = 413
Score = 127 (49.8 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 46/179 (25%), Positives = 80/179 (44%)
Query: 54 VIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLER------EDLRLVGASRTDTGVHA 107
V++Y GT +AG Q+ + TIQ + +A RV + + + +R+ A+RTD GVHA
Sbjct: 42 VVSYRGTGFAGLQYNANVKTIQDTLFQAFARVGAVVQVNADSPKKIRMCSAARTDKGVHA 101
Query: 108 WGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
V + L + +N +LPP IRV +++ F S++Y Y +
Sbjct: 102 IVNVLG-LKVLDNQPLPHVVNLVNDILPPCIRVWKMARTFNSFSPHTVCDSRVYEYWLPV 160
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEY-FVGKHDFSAFVNVQRNDRLLNPVKSVFR 225
+++ P L ++ +A+E F S N+ + D + N + FR
Sbjct: 161 SSLLTP--------RPCTLEAYVIAKASEKAFPINETLSHLANLSKQDCVANSLSEPFR 211
>ASPGD|ASPL0000040109 [details] [associations]
symbol:AN3170 species:162425 "Emericella nidulans"
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=RCA] [GO:0004730 "pseudouridylate synthase activity"
evidence=RCA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:BN001306
GO:GO:0003723 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 HOGENOM:HOG000199032
EnsemblFungi:CADANIAT00009900 OMA:LWDCIFP Uniprot:C8VIE4
Length = 664
Score = 109 (43.4 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 35/110 (31%), Positives = 50/110 (45%)
Query: 130 LNGLLPPDIRVREISAAVPE-FHARFSAKSKIYHYKIYNDAVMDP-------FQRHYAYH 181
LN LP DIRV PE F AR+S + + Y Y + P R
Sbjct: 306 LNKALPEDIRVLAWCPNPPEDFDARYSCRERHYKY-FFTQPAFSPTPGPLGLLPRKGDAP 364
Query: 182 SVYK---LNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
Y+ L+ MR+AA+YF G HDF F V + ++ N + ++R D+
Sbjct: 365 PKYREGWLDIDAMREAAKYFEGVHDFRNFCKVDTSKQIENFERIIYRADI 414
Score = 51 (23.0 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 38 VKPPT-----DDSFPGFKW-RLVIAYDGTRYAGWQFQTSPPTIQCIVE----KALIRVTK 87
V+PP D S F++ L AY G RY G + + PT +E KAL+R T+
Sbjct: 148 VRPPKQPKKMDPSQYNFRFIALKFAYLGQRYQGLEHANNNPTALPTIEEEMWKALMR-TR 206
Query: 88 L 88
L
Sbjct: 207 L 207
Score = 48 (22.0 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 98 ASRTDTGVHAWGQV 111
A RTD GV A+GQV
Sbjct: 243 AGRTDRGVSAFGQV 256
>UNIPROTKB|F5H1S9 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9606
"Homo sapiens" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AC131009 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 HGNC:HGNC:15508 ChiTaRS:PUS1
IPI:IPI00795171 ProteinModelPortal:F5H1S9 SMR:F5H1S9 PRIDE:F5H1S9
Ensembl:ENST00000542167 UCSC:uc001uji.3 ArrayExpress:F5H1S9
Bgee:F5H1S9 Uniprot:F5H1S9
Length = 374
Score = 122 (48.0 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 62/247 (25%), Positives = 105/247 (42%)
Query: 73 TIQCIVEKALIR---VTKLEREDLRLVG---ASRTDTGVHAWGQVAHFITPFSYDGLESI 126
TI+ + AL+R + + ED+R + +RTD GV A GQV D LE I
Sbjct: 58 TIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDDILEKI 117
Query: 127 HAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKL 186
N LP IR+ + F+++ ++ Y Y + A R Y+L
Sbjct: 118 ----NSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHK-DRD-VQDETYRL 171
Query: 187 NTTLMRQAAEY---FVGKHDFSAFVNVQRNDRLLNPVKSVFRF----DVIEMGA-LLQLE 238
+ ++Q + G H+F F + Q+ + + + + + G +
Sbjct: 172 SAETLQQVNRLLACYKGTHNFHNFTS-QKGPQDPSACRYILEMYCEEPFVREGLEFAVIR 230
Query: 239 VEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEV 298
V+G F+ Q+R MV L++ I K P ++ + T+ + ++ K AP GL L V
Sbjct: 231 VKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTE-KVDVPK----APGLGLVLERV 285
Query: 299 ---KYNE 302
KYN+
Sbjct: 286 HFEKYNQ 292
>TAIR|locus:2012898 [details] [associations]
symbol:AT1G20370 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0006333 "chromatin assembly or
disassembly" evidence=RCA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
EMBL:AC026234 eggNOG:COG0101 KO:K06173 OMA:IRKMISM
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 EMBL:AY035176 EMBL:AY059123 IPI:IPI00538439
PIR:E86337 RefSeq:NP_564112.1 UniGene:At.21336
ProteinModelPortal:Q9LN29 STRING:Q9LN29 PaxDb:Q9LN29 PRIDE:Q9LN29
EnsemblPlants:AT1G20370.1 GeneID:838625 KEGG:ath:AT1G20370
TAIR:At1g20370 HOGENOM:HOG000030790 InParanoid:Q9LN29
PhylomeDB:Q9LN29 ProtClustDB:CLSN2917029 ArrayExpress:Q9LN29
Genevestigator:Q9LN29 Uniprot:Q9LN29
Length = 549
Score = 89 (36.4 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 40/130 (30%), Positives = 54/130 (41%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIR---VTKLEREDLR---LVGASRTDT 103
K +V A+ G Y G Q TI+ +E+AL V +R R ++RTD
Sbjct: 59 KVAIVFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDADRNKPRNYEWARSARTDK 118
Query: 104 GVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHY 163
GV A GQV ++ Y LN LP IRV P F ++ + Y Y
Sbjct: 119 GVSAVGQV---VSGRFYVDPPGFVERLNSKLPDQIRVFGYKRVAPSFSSKKFCDRRRYVY 175
Query: 164 KIYNDAVMDP 173
I A +DP
Sbjct: 176 LIPVFA-LDP 184
Score = 78 (32.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 30/113 (26%), Positives = 48/113 (42%)
Query: 197 YFVGKHDFSAFVN-VQRNDRLLNPVKSVFRFD-VIEMGA--LLQLEVEGSGFLYRQVRNM 252
Y+VG H+F F + D N F + VI + ++ EV G F+ Q+R M
Sbjct: 327 YYVGSHNFHNFTTRTKAADPAANRYILSFNANTVINLDGKDFVKCEVVGQSFMLHQIRKM 386
Query: 253 VALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVE---VKYNE 302
+ L + I + P ++ +K++ AP GL L E YN+
Sbjct: 387 IGLAVAIMRNYAPESLIEASF----KKDVRINVPMAPEVGLYLDECFFTSYNK 435
>DICTYBASE|DDB_G0281619 [details] [associations]
symbol:DDB_G0281619 "tRNA pseudouridine synthase"
species:44689 "Dictyostelium discoideum" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 dictyBase:DDB_G0281619
GO:GO:0003723 EMBL:AAFI02000042 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 ProtClustDB:CLSZ2846682
RefSeq:XP_640538.1 ProteinModelPortal:Q54TQ3
EnsemblProtists:DDB0304450 GeneID:8623148 KEGG:ddi:DDB_G0281619
InParanoid:Q54TQ3 OMA:FINGHIA Uniprot:Q54TQ3
Length = 504
Score = 112 (44.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 37/126 (29%), Positives = 56/126 (44%)
Query: 53 LVIAYDGTRY--AGWQFQTSPPTIQCIVEKALIRVTKL------EREDLRLVGASRTDTG 104
+V YDGT Y G+Q P+I+ ++EK L R + E + L+ +SRTD G
Sbjct: 93 MVFGYDGTGYYGLGYQVDIKYPSIENLIEKVLFRCGHILPSNVGELKRLKWSHSSRTDKG 152
Query: 105 VHAWGQVAH-FIT----PFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSK 159
VH+ V F+ F D ++ +N LP IR+ F AR +
Sbjct: 153 VHSLATVISCFLVVDDNTFKNDINQTFIDTINNYLPSSIRLFSACKVSRSFQARKKGIER 212
Query: 160 IYHYKI 165
Y+Y +
Sbjct: 213 SYNYMV 218
Score = 52 (23.4 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 23/94 (24%), Positives = 41/94 (43%)
Query: 211 QRNDRLLNPVKSVF-RFDVIEM-G-ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPD 267
+ N + +KS + ++IE+ G + + G F+ Q+R MV L I K +
Sbjct: 304 RNNSTNIRNIKSFYVENEIIEIKGKGWYKFVIIGESFILYQIRRMVGFFLSIVKGYSTVE 363
Query: 268 IVPKILATQDRKELAKYALSAPPHGLCLVEVKYN 301
+ L + + +APP L L VK++
Sbjct: 364 ALELSL----KSPFSICVPTAPPFPLYLFNVKFD 393
>POMBASE|SPCC126.03 [details] [associations]
symbol:pus1 "tRNA pseudouridine synthase Lsp1"
species:4896 "Schizosaccharomyces pombe" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IGI;IDA] [GO:0006400 "tRNA
modification" evidence=IDA] [GO:0009982 "pseudouridine synthase
activity" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PomBase:SPCC126.03 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003723 GO:GO:0006400
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 EMBL:AJ251329
PIR:T40907 RefSeq:NP_588446.1 ProteinModelPortal:O94396
STRING:O94396 EnsemblFungi:SPCC126.03.1 GeneID:2539082
KEGG:spo:SPCC126.03 eggNOG:COG0101 HOGENOM:HOG000213984 KO:K06173
OMA:IRKMISM OrthoDB:EOG48KVMJ NextBio:20800254 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
Uniprot:O94396
Length = 534
Score = 122 (48.0 bits), Expect = 0.00016, P = 0.00016
Identities = 39/133 (29%), Positives = 62/133 (46%)
Query: 47 PGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIR---VTKLERED---LRLVGASR 100
P K ++ Y G+ Y G Q TI+ + A ++ V+ +D + L A+R
Sbjct: 42 PKRKVACLVGYCGSGYHGMQLNPPSKTIEGDLFDAFVKAGAVSSYNADDPKKVALARAAR 101
Query: 101 TDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKI 160
TD GVHA G V + D E + +N LPP IR+ ++ + F+ R +S+I
Sbjct: 102 TDKGVHAAGNVIS-LKLIMED--EKLIEKVNEHLPPSIRLWDVIRTINSFNPRTYCESRI 158
Query: 161 YHYKIYNDAVMDP 173
Y Y + A + P
Sbjct: 159 YEYMVPTYAFVPP 171
>TAIR|locus:2065748 [details] [associations]
symbol:AT2G30320 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0008033 EMBL:AC002338
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101
KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
IPI:IPI00537336 PIR:A84707 RefSeq:NP_180591.1 UniGene:At.38371
ProteinModelPortal:O22928 PaxDb:O22928 PRIDE:O22928
EnsemblPlants:AT2G30320.1 GeneID:817582 KEGG:ath:AT2G30320
TAIR:At2g30320 HOGENOM:HOG000070648 InParanoid:O22928 OMA:IRKMVGT
PhylomeDB:O22928 ProtClustDB:PLN03078 Genevestigator:O22928
GermOnline:AT2G30320 Uniprot:O22928
Length = 510
Score = 96 (38.9 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 43/160 (26%), Positives = 71/160 (44%)
Query: 34 TNNTVKPPTDDSFPGFKW------RLVI--AYDGTRYAGWQFQTSPPTIQCI---VEKAL 82
++ ++ PP+ D+F KW ++VI Y GT Y G Q Q P+I+ I +E A+
Sbjct: 40 SSTSLSPPSSDNFLADKWESYRKKKVVIRIGYVGTDYRGLQIQRDDPSIKTIEGELEVAI 99
Query: 83 IRVTKLERE---DLRLVG---ASRTDTGVHAWGQVAHFI-----TPFSYDGLESIHA-AL 130
+ + DL +G +SRTD GVH+ T + D ++ A +
Sbjct: 100 YKAGGIRDSNYGDLHKIGWARSSRTDKGVHSLATSISLKMEIPETAWKDDPQGTVLAKCI 159
Query: 131 NGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
+ LP +IRV + + F R + Y Y + D +
Sbjct: 160 SKHLPENIRVFSVLPSNRRFDPRRECTLRKYSYLLPVDVL 199
Score = 67 (28.6 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 21/96 (21%), Positives = 40/96 (41%)
Query: 235 LQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLC 294
+++ + G F+ Q+R M+ + + +E +P DI+ L + + L P +
Sbjct: 344 VEISIWGESFMLHQIRKMIGTAVAVKRELLPRDIIRLSL-----NKFTRIVLPLAPSEVL 398
Query: 295 LVEVKYNEEHLRLPAACPLSSFGRHHSVRKCKLPFY 330
++ E RLP + + G V K FY
Sbjct: 399 ILRGNSFEVR-RLPERPGMEATGESEEVEKEIEEFY 433
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.138 0.421 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 330 330 0.00089 116 3 11 22 0.37 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 70
No. of states in DFA: 606 (64 KB)
Total size of DFA: 224 KB (2123 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.95u 0.12s 25.07t Elapsed: 00:00:01
Total cpu time: 24.96u 0.12s 25.08t Elapsed: 00:00:01
Start: Fri May 10 12:07:59 2013 End: Fri May 10 12:08:00 2013