BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043662
(330 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225432191|ref|XP_002275097.1| PREDICTED: tRNA pseudouridine synthase A 1-like [Vitis vinifera]
Length = 336
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 243/288 (84%), Positives = 263/288 (91%)
Query: 43 DDSFPGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTD 102
+ S G+KWRLVIAY+GTRY+GWQ+Q SPPTIQCIVEKAL R TKLEREDL LVGASRTD
Sbjct: 49 NTSASGYKWRLVIAYEGTRYSGWQYQQSPPTIQCIVEKALTRATKLEREDLYLVGASRTD 108
Query: 103 TGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYH 162
TGVHAWGQVAHF+TPF+YDGLESIHAALNGLLPPDIRVREIS AVPEFHARFS KSKIYH
Sbjct: 109 TGVHAWGQVAHFLTPFNYDGLESIHAALNGLLPPDIRVREISPAVPEFHARFSVKSKIYH 168
Query: 163 YKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKS 222
YKIYNDAVMDPF RHY YHSVYKLNT MR+AA++F GKHDFSAFVN NDR NPVK+
Sbjct: 169 YKIYNDAVMDPFLRHYVYHSVYKLNTLAMREAAKHFTGKHDFSAFVNASHNDRSPNPVKN 228
Query: 223 VFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELA 282
+FRFDV EMGALLQLEVEGSGFLYRQVRNMVALLLQIG+EAIPP+IVP ILAT+DRKELA
Sbjct: 229 IFRFDVNEMGALLQLEVEGSGFLYRQVRNMVALLLQIGREAIPPNIVPWILATRDRKELA 288
Query: 283 KYALSAPPHGLCLVEVKYNEEHLRLPAACPLSSFGRHHSVRKCKLPFY 330
KYALSAPPHGLCL+ VKYNEEHL+LP+ CP +S GRHH+VRKCKLPFY
Sbjct: 289 KYALSAPPHGLCLMSVKYNEEHLQLPSGCPATSHGRHHTVRKCKLPFY 336
>gi|297736816|emb|CBI26017.3| unnamed protein product [Vitis vinifera]
Length = 326
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 243/288 (84%), Positives = 263/288 (91%)
Query: 43 DDSFPGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTD 102
+ S G+KWRLVIAY+GTRY+GWQ+Q SPPTIQCIVEKAL R TKLEREDL LVGASRTD
Sbjct: 39 NTSASGYKWRLVIAYEGTRYSGWQYQQSPPTIQCIVEKALTRATKLEREDLYLVGASRTD 98
Query: 103 TGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYH 162
TGVHAWGQVAHF+TPF+YDGLESIHAALNGLLPPDIRVREIS AVPEFHARFS KSKIYH
Sbjct: 99 TGVHAWGQVAHFLTPFNYDGLESIHAALNGLLPPDIRVREISPAVPEFHARFSVKSKIYH 158
Query: 163 YKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKS 222
YKIYNDAVMDPF RHY YHSVYKLNT MR+AA++F GKHDFSAFVN NDR NPVK+
Sbjct: 159 YKIYNDAVMDPFLRHYVYHSVYKLNTLAMREAAKHFTGKHDFSAFVNASHNDRSPNPVKN 218
Query: 223 VFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELA 282
+FRFDV EMGALLQLEVEGSGFLYRQVRNMVALLLQIG+EAIPP+IVP ILAT+DRKELA
Sbjct: 219 IFRFDVNEMGALLQLEVEGSGFLYRQVRNMVALLLQIGREAIPPNIVPWILATRDRKELA 278
Query: 283 KYALSAPPHGLCLVEVKYNEEHLRLPAACPLSSFGRHHSVRKCKLPFY 330
KYALSAPPHGLCL+ VKYNEEHL+LP+ CP +S GRHH+VRKCKLPFY
Sbjct: 279 KYALSAPPHGLCLMSVKYNEEHLQLPSGCPATSHGRHHTVRKCKLPFY 326
>gi|255556594|ref|XP_002519331.1| pseudouridylate synthase, putative [Ricinus communis]
gi|223541646|gb|EEF43195.1| pseudouridylate synthase, putative [Ricinus communis]
Length = 344
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 226/291 (77%), Positives = 252/291 (86%), Gaps = 1/291 (0%)
Query: 33 GTNNTVKPPTDDS-FPGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLERE 91
G + VK T S FKWRLVIAYDGTRYAGWQFQ SPPTIQC +EKALI+VTKL+R+
Sbjct: 54 GNGDVVKKWTGTSTVDCFKWRLVIAYDGTRYAGWQFQQSPPTIQCYLEKALIQVTKLDRK 113
Query: 92 DLRLVGASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFH 151
DL LVGASRTDTGVHA+GQVAHF+TPF+Y L++IHAALNGLLPPDIRVREIS AVPEFH
Sbjct: 114 DLLLVGASRTDTGVHAFGQVAHFVTPFNYPSLDTIHAALNGLLPPDIRVREISPAVPEFH 173
Query: 152 ARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQ 211
ARFS SK+YHYKIYND MDPF RHYAYHS YKLN MRQAA+YF+G HDFSAF N
Sbjct: 174 ARFSTISKLYHYKIYNDTFMDPFLRHYAYHSTYKLNAAAMRQAAKYFIGSHDFSAFANAS 233
Query: 212 RNDRLLNPVKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPK 271
R+DR+ NPVK++FRFDVIEMGALLQLEVEG+GFLYRQVRNMVALLLQIGKEA+PP+IVPK
Sbjct: 234 RDDRVPNPVKTIFRFDVIEMGALLQLEVEGTGFLYRQVRNMVALLLQIGKEAVPPEIVPK 293
Query: 272 ILATQDRKELAKYALSAPPHGLCLVEVKYNEEHLRLPAACPLSSFGRHHSV 322
ILA +DR+ELAKYAL PPHGLCLV +KYNEEHLRLP+ CP +SFGR +V
Sbjct: 294 ILAARDRRELAKYALPTPPHGLCLVSIKYNEEHLRLPSGCPTTSFGRWFTV 344
>gi|147865780|emb|CAN81146.1| hypothetical protein VITISV_020811 [Vitis vinifera]
Length = 403
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/280 (81%), Positives = 245/280 (87%), Gaps = 13/280 (4%)
Query: 64 GWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFITPFSYDGL 123
GWQ+Q SPPTIQCIVEKAL R TKLEREDL LVGASRTDTGVHAWGQVAHF+TPF+YDGL
Sbjct: 124 GWQYQQSPPTIQCIVEKALTRATKLEREDLYLVGASRTDTGVHAWGQVAHFLTPFNYDGL 183
Query: 124 ESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSV 183
ESIHAALNGLLPPDIRVREIS AVPEFHARFS KSKIYHYKIYNDAVMDPF RHY YHSV
Sbjct: 184 ESIHAALNGLLPPDIRVREISPAVPEFHARFSXKSKIYHYKIYNDAVMDPFLRHYVYHSV 243
Query: 184 YKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM------------ 231
YKLNT MR+AA++F GKHDFSAFVN NDR NPVK++FRFDV EM
Sbjct: 244 YKLNTLAMREAAKHFTGKHDFSAFVNASHNDRSPNPVKNIFRFDVNEMMFLELIVNCIIA 303
Query: 232 -GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
GALLQLEVEGSGFLYRQVRNMVALLLQIG+EAIPP+IVP ILAT+DRKELAKYALSAPP
Sbjct: 304 QGALLQLEVEGSGFLYRQVRNMVALLLQIGREAIPPNIVPWILATRDRKELAKYALSAPP 363
Query: 291 HGLCLVEVKYNEEHLRLPAACPLSSFGRHHSVRKCKLPFY 330
HGLCL+ VKYNEEHL+LP+ CP +S GRHH+VRKCKLPFY
Sbjct: 364 HGLCLMSVKYNEEHLQLPSGCPATSHGRHHTVRKCKLPFY 403
>gi|356564676|ref|XP_003550576.1| PREDICTED: tRNA pseudouridine synthase A 1-like [Glycine max]
Length = 309
Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/294 (75%), Positives = 253/294 (86%), Gaps = 5/294 (1%)
Query: 38 VKPPTDDSFPGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVG 97
VKP D +KWRLV+AYDGT+YAGWQ+Q SPPT+QC +EKAL R TKL+R+D LVG
Sbjct: 19 VKPIQD----WYKWRLVLAYDGTKYAGWQYQQSPPTVQCTLEKALTRATKLQRKDFCLVG 74
Query: 98 ASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAK 157
ASRTD GVHAWGQVAHF TPF+YD LE +HAALNGLLP DIRVREIS A EFHARFSA
Sbjct: 75 ASRTDAGVHAWGQVAHFFTPFNYDNLEELHAALNGLLPTDIRVREISPASAEFHARFSAI 134
Query: 158 SKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLL 217
SKIYHYKIYNDA+MDPFQRH+AYHSVYKLN+ +MR+AA+YFVGKHDFSAF N ND +
Sbjct: 135 SKIYHYKIYNDAIMDPFQRHFAYHSVYKLNSAVMREAAKYFVGKHDFSAFANASNNDGVP 194
Query: 218 NPVKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQD 277
+PVK VFRFD+ EMGALLQ+EVEGSGFLYRQVRNMVALLLQIG+EAIPPDIVP ILA++D
Sbjct: 195 DPVKHVFRFDLKEMGALLQIEVEGSGFLYRQVRNMVALLLQIGREAIPPDIVPHILASRD 254
Query: 278 RKELAKYALSAPPHGLCLVEVKYNEEHLRLPAAC-PLSSFGRHHSVRKCKLPFY 330
RKELAKY+LSAPPHGLCLV + YNE HL P C P +SFGRHH++RKCK+PF+
Sbjct: 255 RKELAKYSLSAPPHGLCLVSINYNESHLLPPPGCPPANSFGRHHTIRKCKVPFF 308
>gi|356545824|ref|XP_003541334.1| PREDICTED: tRNA pseudouridine synthase A 1-like [Glycine max]
Length = 327
Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/332 (69%), Positives = 267/332 (80%), Gaps = 12/332 (3%)
Query: 1 MSYGVVGLPSPLYSNGLLPSTNKQGVGVVGLE-GTNNTVKPPTDDSFPGFKWRLVIAYDG 59
++ G + +PSP P V LE G + VK D G+KWR+V+AYDG
Sbjct: 5 VAVGALAVPSPT------PIPFLNSTAPVELEHGHGHGVKLIQD----GYKWRIVLAYDG 54
Query: 60 TRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFITPFS 119
T+YAGWQ+Q SPPT+QC VEKAL + TKL+R+DL LVGASRTD GVHAWGQVAHF TPF+
Sbjct: 55 TQYAGWQYQESPPTVQCTVEKALTQATKLQRKDLCLVGASRTDAGVHAWGQVAHFFTPFN 114
Query: 120 YDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYA 179
YD LE +HAALNGLLP DIR+REIS A EFHARFSAKSKIYHYKIYNDA+MDPFQRH+A
Sbjct: 115 YDNLEQLHAALNGLLPTDIRIREISPASAEFHARFSAKSKIYHYKIYNDAIMDPFQRHFA 174
Query: 180 YHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGALLQLEV 239
YHSVYKLN+ +MR+AA YFVGKHDFSAF N NDR+ +PVK VFRFD+ EMGALLQLEV
Sbjct: 175 YHSVYKLNSAVMREAATYFVGKHDFSAFANASHNDRVPDPVKHVFRFDLKEMGALLQLEV 234
Query: 240 EGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEVK 299
EGSGFLYRQVRNMVALLLQIG+EAIPPDIVP ILA++DRKELAKY+L APPHGLCLV +
Sbjct: 235 EGSGFLYRQVRNMVALLLQIGREAIPPDIVPHILASRDRKELAKYSLPAPPHGLCLVSIN 294
Query: 300 YNEEHLR-LPAACPLSSFGRHHSVRKCKLPFY 330
YNE HL P + P +SFGRH ++RKCK+PF+
Sbjct: 295 YNESHLLPPPESPPANSFGRHQTIRKCKVPFF 326
>gi|357479187|ref|XP_003609879.1| tRNA pseudouridine synthase family protein [Medicago truncatula]
gi|355510934|gb|AES92076.1| tRNA pseudouridine synthase family protein [Medicago truncatula]
Length = 322
Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust.
Identities = 224/320 (70%), Positives = 257/320 (80%), Gaps = 11/320 (3%)
Query: 10 SPLYSNGLLPSTNKQGVGVVGLEGTNNTVKPPTDDSFPGFKWRLVIAYDGTRYAGWQFQT 69
+P+ S L S N VV VKP D G+KWRL+++YDGTRYAGWQ+Q
Sbjct: 14 TPIPSPTSLLSLNSAASDVV-------EVKPNQD----GYKWRLLLSYDGTRYAGWQYQE 62
Query: 70 SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFITPFSYDGLESIHAA 129
SPPT+QC VEKALIR TKL+R+DL+LVGASRTD GVHAWGQVAHF+TPF+YD L+S+HAA
Sbjct: 63 SPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWGQVAHFLTPFNYDNLDSVHAA 122
Query: 130 LNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTT 189
LNGLLP DIRVREIS A EFHARFS KSKIYHYKIY+D +MDPFQRH+AYH++YKLN+
Sbjct: 123 LNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTIMDPFQRHFAYHNMYKLNSA 182
Query: 190 LMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGALLQLEVEGSGFLYRQV 249
MR+AA YF+GKHDF+AF N NDR+ +PVK +FRFDV EMGALLQLEVEGSGFLYRQV
Sbjct: 183 AMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFRFDVKEMGALLQLEVEGSGFLYRQV 242
Query: 250 RNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEVKYNEEHLRLPA 309
RNMVALLLQIGKEA PPDIVP ILA++DRKELAKY PPHGLCLV + YNE HL P
Sbjct: 243 RNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPPHGLCLVSINYNESHLLPPP 302
Query: 310 ACPLSSFGRHHSVRKCKLPF 329
CP SFG HH++RKCK+ F
Sbjct: 303 GCPAKSFGMHHTIRKCKVVF 322
>gi|357479185|ref|XP_003609878.1| tRNA pseudouridine synthase family protein [Medicago truncatula]
gi|355510933|gb|AES92075.1| tRNA pseudouridine synthase family protein [Medicago truncatula]
Length = 350
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 217/292 (74%), Positives = 248/292 (84%), Gaps = 4/292 (1%)
Query: 38 VKPPTDDSFPGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVG 97
VKP D G+KWRL+++YDGTRYAGWQ+Q SPPT+QC VEKALIR TKL+R+DL+LVG
Sbjct: 63 VKPNQD----GYKWRLLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVG 118
Query: 98 ASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAK 157
ASRTD GVHAWGQVAHF+TPF+YD L+S+HAALNGLLP DIRVREIS A EFHARFS K
Sbjct: 119 ASRTDAGVHAWGQVAHFLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVK 178
Query: 158 SKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLL 217
SKIYHYKIY+D +MDPFQRH+AYH++YKLN+ MR+AA YF+GKHDF+AF N NDR+
Sbjct: 179 SKIYHYKIYSDTIMDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIP 238
Query: 218 NPVKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQD 277
+PVK +FRFDV EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEA PPDIVP ILA++D
Sbjct: 239 DPVKHIFRFDVKEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRD 298
Query: 278 RKELAKYALSAPPHGLCLVEVKYNEEHLRLPAACPLSSFGRHHSVRKCKLPF 329
RKELAKY PPHGLCLV + YNE HL P CP SFG HH++RKCK+ F
Sbjct: 299 RKELAKYCYYLPPHGLCLVSINYNESHLLPPPGCPAKSFGMHHTIRKCKVVF 350
>gi|449441496|ref|XP_004138518.1| PREDICTED: tRNA pseudouridine synthase A 1-like [Cucumis sativus]
gi|449518841|ref|XP_004166444.1| PREDICTED: tRNA pseudouridine synthase A 1-like [Cucumis sativus]
Length = 335
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/318 (69%), Positives = 259/318 (81%), Gaps = 7/318 (2%)
Query: 17 LLPSTNKQGV----GVVGLEGTNNTVKPPTDDSFPGFKWRLVIAYDGTRYAGWQFQTSPP 72
++PS N G E + +K P SFP FKWRL+IAYDGTRYAGWQ+Q SPP
Sbjct: 21 IIPSPNGASSSSSRGFPNAEDDASYIKEP---SFPCFKWRLLIAYDGTRYAGWQYQRSPP 77
Query: 73 TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNG 132
TIQC++E+ALI TKLER+DL LVGASRTD GVHAWGQVAHF+TPF+YD LES+HAALNG
Sbjct: 78 TIQCLIEEALIGATKLERKDLHLVGASRTDKGVHAWGQVAHFVTPFNYDSLESVHAALNG 137
Query: 133 LLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMR 192
LLP DIRVRE+S AVP+FHARFS SK+YHYKIY+ +MDPFQR Y YH VYKLN M+
Sbjct: 138 LLPVDIRVREMSPAVPDFHARFSTLSKVYHYKIYSGTIMDPFQRCYTYHCVYKLNYAAMK 197
Query: 193 QAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNM 252
+AA YFVGKHDFSAF N NDR++NPVK +FRFDVIEMGAL+QLEVEGSGFLYRQVRNM
Sbjct: 198 EAANYFVGKHDFSAFTNAAHNDRVVNPVKVIFRFDVIEMGALVQLEVEGSGFLYRQVRNM 257
Query: 253 VALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEVKYNEEHLRLPAACP 312
V LL+QIGKEA+PP++VPKILA++DR+ELAKYA PP GLCLV + Y E+HL+LP+ CP
Sbjct: 258 VGLLVQIGKEALPPEVVPKILASRDRRELAKYASGVPPQGLCLVSINYKEDHLKLPSDCP 317
Query: 313 LSSFGRHHSVRKCKLPFY 330
+SFGR SV KCK+PFY
Sbjct: 318 GTSFGRTRSVSKCKVPFY 335
>gi|297829238|ref|XP_002882501.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328341|gb|EFH58760.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 323
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 218/331 (65%), Positives = 260/331 (78%), Gaps = 9/331 (2%)
Query: 1 MSYGVVGLPSPLYSNGLLPSTNKQGVGVVGLEGTNNTVKPPTDDSFPGFKWRLVIAYDGT 60
MS LP L++NG L S + + N+ VK +++ KWRLVIAYDGT
Sbjct: 1 MSCVTPALPPSLFTNGSLSSPQN-----ISMTNLNSLVKVSDSNAY---KWRLVIAYDGT 52
Query: 61 RYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFITPFSY 120
R+AGWQ+Q SPPTIQ ++EKALI++T+L R++L L+GA RTD GVHAWGQVAHF+TPF+Y
Sbjct: 53 RFAGWQYQESPPTIQSMLEKALIQITELGRKELHLIGAGRTDAGVHAWGQVAHFVTPFNY 112
Query: 121 DGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYAY 180
L+S HAALNGLLP DIRVRE+SAAVPEFHARFSA SK+Y Y+IYND MDPFQRH+AY
Sbjct: 113 TSLDSFHAALNGLLPKDIRVRELSAAVPEFHARFSAHSKVYRYQIYNDTFMDPFQRHWAY 172
Query: 181 HSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGALLQLEVE 240
H YKLN + MR+AA FVG HDFSAF N R D L +P+K++ RFDVI+MG+LLQLEVE
Sbjct: 173 HCAYKLNASKMREAANLFVGMHDFSAFANATREDGLPDPLKTISRFDVIQMGSLLQLEVE 232
Query: 241 GSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY-ALSAPPHGLCLVEVK 299
GSGFLYRQVRNMVALL+QIGKEA+ DIVP IL T+DR+ LAKY L APPHGLCLV VK
Sbjct: 233 GSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTTLPAPPHGLCLVSVK 292
Query: 300 YNEEHLRLPAACPLSSFGRHHSVRKCKLPFY 330
Y E HL+LP CP++SFGRHH++ KCKLPFY
Sbjct: 293 YRESHLKLPLDCPVTSFGRHHTITKCKLPFY 323
>gi|30680075|ref|NP_187351.2| tRNA pseudouridine synthase A [Arabidopsis thaliana]
gi|119360081|gb|ABL66769.1| At3g06950 [Arabidopsis thaliana]
gi|332640958|gb|AEE74479.1| tRNA pseudouridine synthase A [Arabidopsis thaliana]
Length = 323
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 218/331 (65%), Positives = 263/331 (79%), Gaps = 9/331 (2%)
Query: 1 MSYGVVGLPSPLYSNGLLPSTNKQGVGVVGLEGTNNTVKPPTDDSFPGFKWRLVIAYDGT 60
MS LP L++NG L S + + N++VK DS +KWRLVIAYDGT
Sbjct: 1 MSCVTPALPPSLFTNGYLSSPQN-----ISMTNLNSSVK--VSDS-GAYKWRLVIAYDGT 52
Query: 61 RYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFITPFSY 120
R+AGWQ+Q SPPTIQ ++EKALI++T+L R++L+L+GA RTD GVHAWGQVAHF+TPF+Y
Sbjct: 53 RFAGWQYQESPPTIQSMLEKALIQITELGRKELQLIGAGRTDAGVHAWGQVAHFVTPFNY 112
Query: 121 DGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYAY 180
L+S HAALNGLLP DIRVRE+SAAVPEFHARFSA SK+Y Y+IYND MDPFQRH+AY
Sbjct: 113 TSLDSFHAALNGLLPKDIRVRELSAAVPEFHARFSASSKVYRYQIYNDTFMDPFQRHWAY 172
Query: 181 HSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGALLQLEVE 240
H YKLN + MR+AA FVGKHDFSAF N R D + +P+K++ RFDVI+MG+LLQLEVE
Sbjct: 173 HCAYKLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKTISRFDVIQMGSLLQLEVE 232
Query: 241 GSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY-ALSAPPHGLCLVEVK 299
GSGFLYRQVRNMVALL+QIGKEA+ DIVP IL T+DR+ LAKY +L A PHGLCLV VK
Sbjct: 233 GSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTSLPASPHGLCLVSVK 292
Query: 300 YNEEHLRLPAACPLSSFGRHHSVRKCKLPFY 330
Y E+HL+LP CP++S GRHH++ KCKLPFY
Sbjct: 293 YKEDHLKLPLDCPVTSSGRHHTITKCKLPFY 323
>gi|110737769|dbj|BAF00823.1| putative tRNA pseudouridine synthase [Arabidopsis thaliana]
Length = 323
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 216/331 (65%), Positives = 262/331 (79%), Gaps = 9/331 (2%)
Query: 1 MSYGVVGLPSPLYSNGLLPSTNKQGVGVVGLEGTNNTVKPPTDDSFPGFKWRLVIAYDGT 60
MS LP L++NG L S + + N++VK ++ KWRLVIAYDGT
Sbjct: 1 MSCVTPALPPSLFTNGYLSSPQN-----ISMTNLNSSVKVSGSGAY---KWRLVIAYDGT 52
Query: 61 RYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFITPFSY 120
R+AGWQ+Q SPPTIQ ++EKALI++T+L R++L+L+GA RTD GVHAWGQVAHF+TPF+Y
Sbjct: 53 RFAGWQYQESPPTIQSMLEKALIQITELGRKELQLIGAGRTDAGVHAWGQVAHFVTPFNY 112
Query: 121 DGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYAY 180
L+S HAALNGLLP DIRVRE+SAAVPEFHARFSA SK+Y Y+IYND MDPFQRH+AY
Sbjct: 113 TSLDSFHAALNGLLPKDIRVRELSAAVPEFHARFSASSKVYRYQIYNDTFMDPFQRHWAY 172
Query: 181 HSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGALLQLEVE 240
H YKLN + MR+AA FVGKHDFSAF N R D + +P+K++ RFDVI+MG+LLQLEVE
Sbjct: 173 HCAYKLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKTISRFDVIQMGSLLQLEVE 232
Query: 241 GSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY-ALSAPPHGLCLVEVK 299
GSGFLYRQVRNMVALL+QIGKEA+ DIVP IL T+DR+ LAKY +L A PHGLCLV VK
Sbjct: 233 GSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTSLPASPHGLCLVSVK 292
Query: 300 YNEEHLRLPAACPLSSFGRHHSVRKCKLPFY 330
Y E+HL+LP CP++S GRHH++ KCKLPFY
Sbjct: 293 YKEDHLKLPLDCPVTSSGRHHTITKCKLPFY 323
>gi|6729002|gb|AAF26999.1|AC016827_10 putative tRNA pseudouridine synthase [Arabidopsis thaliana]
Length = 298
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 209/301 (69%), Positives = 251/301 (83%), Gaps = 4/301 (1%)
Query: 31 LEGTNNTVKPPTDDSFPGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLER 90
+ N++VK DS +KWRLVIAYDGTR+AGWQ+Q SPPTIQ ++EKALI++T+L R
Sbjct: 1 MTNLNSSVK--VSDS-GAYKWRLVIAYDGTRFAGWQYQESPPTIQSMLEKALIQITELGR 57
Query: 91 EDLRLVGASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEF 150
++L+L+GA RTD GVHAWGQVAHF+TPF+Y L+S HAALNGLLP DIRVRE+SAAVPEF
Sbjct: 58 KELQLIGAGRTDAGVHAWGQVAHFVTPFNYTSLDSFHAALNGLLPKDIRVRELSAAVPEF 117
Query: 151 HARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNV 210
HARFSA SK+Y Y+IYND MDPFQRH+AYH YKLN + MR+AA FVGKHDFSAF N
Sbjct: 118 HARFSASSKVYRYQIYNDTFMDPFQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFANA 177
Query: 211 QRNDRLLNPVKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVP 270
R D + +P+K++ RFDVI+MG+LLQLEVEGSGFLYRQVRNMVALL+QIGKEA+ DIVP
Sbjct: 178 TREDGVPDPLKTISRFDVIQMGSLLQLEVEGSGFLYRQVRNMVALLIQIGKEALDSDIVP 237
Query: 271 KILATQDRKELAKY-ALSAPPHGLCLVEVKYNEEHLRLPAACPLSSFGRHHSVRKCKLPF 329
IL T+DR+ LAKY +L A PHGLCLV VKY E+HL+LP CP++S GRHH++ KCKLPF
Sbjct: 238 MILETKDRRVLAKYTSLPASPHGLCLVSVKYKEDHLKLPLDCPVTSSGRHHTITKCKLPF 297
Query: 330 Y 330
Y
Sbjct: 298 Y 298
>gi|413937480|gb|AFW72031.1| pseudouridylate synthase [Zea mays]
Length = 335
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/281 (69%), Positives = 225/281 (80%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
KWR+VIAYDGT++ GWQ+Q S PTIQ +E ALI +TKL+R+ L LVGA RTDTGVHAWG
Sbjct: 55 KWRMVIAYDGTKFKGWQYQPSIPTIQYFLEDALICITKLDRKKLCLVGAGRTDTGVHAWG 114
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVAHF TPFSY L SIH+A+NGLLPP+IRVREISAA PEFHAR S KSK+Y YKIYN+A
Sbjct: 115 QVAHFTTPFSYSCLSSIHSAMNGLLPPEIRVREISAARPEFHARSSTKSKVYRYKIYNEA 174
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+MDPF HYAYHS YKLN M++AA YFVG HDF++F N ND P K + RFDV
Sbjct: 175 IMDPFHNHYAYHSAYKLNPHAMQEAANYFVGIHDFTSFANAAHNDGERRPTKKITRFDVT 234
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
EMGA+LQLEVEG+GFLYRQVRNMVALLLQ+GKEA+PPDIVP I+A +DRKELAK ALSAP
Sbjct: 235 EMGAVLQLEVEGTGFLYRQVRNMVALLLQVGKEALPPDIVPAIIAARDRKELAKVALSAP 294
Query: 290 PHGLCLVEVKYNEEHLRLPAACPLSSFGRHHSVRKCKLPFY 330
PHGL L+ V Y+EE L+ P P SFGR H + KCKL Y
Sbjct: 295 PHGLYLMSVNYDEEILKPPEGSPPISFGRTHHLSKCKLTLY 335
>gi|413937481|gb|AFW72032.1| pseudouridylate synthase [Zea mays]
Length = 334
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/281 (69%), Positives = 225/281 (80%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
KWR+VIAYDGT++ GWQ+Q S PTIQ +E ALI +TKL+R+ L LVGA RTDTGVHAWG
Sbjct: 54 KWRMVIAYDGTKFKGWQYQPSIPTIQYFLEDALICITKLDRKKLCLVGAGRTDTGVHAWG 113
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVAHF TPFSY L SIH+A+NGLLPP+IRVREISAA PEFHAR S KSK+Y YKIYN+A
Sbjct: 114 QVAHFTTPFSYSCLSSIHSAMNGLLPPEIRVREISAARPEFHARSSTKSKVYRYKIYNEA 173
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+MDPF HYAYHS YKLN M++AA YFVG HDF++F N ND P K + RFDV
Sbjct: 174 IMDPFHNHYAYHSAYKLNPHAMQEAANYFVGIHDFTSFANAAHNDGERRPTKKITRFDVT 233
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
EMGA+LQLEVEG+GFLYRQVRNMVALLLQ+GKEA+PPDIVP I+A +DRKELAK ALSAP
Sbjct: 234 EMGAVLQLEVEGTGFLYRQVRNMVALLLQVGKEALPPDIVPAIIAARDRKELAKVALSAP 293
Query: 290 PHGLCLVEVKYNEEHLRLPAACPLSSFGRHHSVRKCKLPFY 330
PHGL L+ V Y+EE L+ P P SFGR H + KCKL Y
Sbjct: 294 PHGLYLMSVNYDEEILKPPEGSPPISFGRTHHLSKCKLTLY 334
>gi|326522897|dbj|BAJ88494.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 328
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/281 (67%), Positives = 233/281 (82%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
KWR+VIAYDGT++ GWQ+Q SPPTIQC +EKAL+R+TKL+R++L LVGA RTDTGVHA G
Sbjct: 48 KWRMVIAYDGTKFKGWQYQPSPPTIQCFLEKALMRITKLDRKELCLVGAGRTDTGVHARG 107
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVAHF TPF+Y L+S H+A+NGLLPPDIRVREISAA EFHAR S KSKIYHYKIYN+A
Sbjct: 108 QVAHFTTPFAYHCLDSFHSAINGLLPPDIRVREISAACGEFHARTSTKSKIYHYKIYNEA 167
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
VMDPF +YAYHS +KLN M++AA +FVG HDF++F N NDR+ +P+K + RFDV
Sbjct: 168 VMDPFHTNYAYHSAHKLNPHAMQEAANHFVGVHDFTSFANAVHNDRVRSPIKKISRFDVT 227
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+M A++QLEVEG+GFLYRQVRNMVALL+Q+G+E +PP+IVPKI+A +DRKELAK ALSAP
Sbjct: 228 KMDAIIQLEVEGTGFLYRQVRNMVALLIQVGREGLPPEIVPKIIAAKDRKELAKVALSAP 287
Query: 290 PHGLCLVEVKYNEEHLRLPAACPLSSFGRHHSVRKCKLPFY 330
PHGL L+ V Y++E L+ P P SFGR H + +CKL FY
Sbjct: 288 PHGLYLMSVNYDKEILKPPVGSPPVSFGRTHQISRCKLLFY 328
>gi|357146309|ref|XP_003573945.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase A
1-like [Brachypodium distachyon]
Length = 333
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 192/295 (65%), Positives = 237/295 (80%), Gaps = 5/295 (1%)
Query: 36 NTVKPPTDDSFPGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRL 95
+TV P + KWR+VIAYDGT++ GWQ+Q SPPTIQC +EKALI +TKL+R++L L
Sbjct: 44 DTVAPES-----AHKWRMVIAYDGTKFKGWQYQPSPPTIQCFLEKALIHITKLDRKELCL 98
Query: 96 VGASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFS 155
VGA RTDTGVHA GQVAHF TPF+Y L+S H+A+NGLLPPDIRVREISAA PEFHAR S
Sbjct: 99 VGAGRTDTGVHARGQVAHFTTPFTYRCLDSFHSAINGLLPPDIRVREISAARPEFHARTS 158
Query: 156 AKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDR 215
KSKIYHYKIYN+AVMDPF +YAYHS ++LN+ MR+AA++FVG+HDF++F N NDR
Sbjct: 159 TKSKIYHYKIYNEAVMDPFHNNYAYHSAHRLNSHAMREAAKHFVGEHDFTSFANAVHNDR 218
Query: 216 LLNPVKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILAT 275
+ +P+K + RFDV EM A++QLEVEG+GFLYRQVRNM ALL+Q+G+EA+PP+IVPKI+
Sbjct: 219 VRSPIKKILRFDVTEMDAIIQLEVEGTGFLYRQVRNMAALLIQVGREALPPEIVPKIIEA 278
Query: 276 QDRKELAKYALSAPPHGLCLVEVKYNEEHLRLPAACPLSSFGRHHSVRKCKLPFY 330
+DRKELAK A APPHGL L+ V Y+ E L+ P P SFGR H + +CKL FY
Sbjct: 279 KDRKELAKVAFLAPPHGLYLMSVNYDREILKPPEDSPPISFGRTHQISRCKLLFY 333
>gi|89953446|gb|ABD83318.1| Fgenesh protein 88 [Beta vulgaris]
Length = 278
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 173/248 (69%), Positives = 207/248 (83%)
Query: 65 WQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFITPFSYDGLE 124
WQ+Q SPPT+QC +EKAL ++T L+R++L +VGA RTDTGVHAWGQVAHF TPF+YD L+
Sbjct: 26 WQYQASPPTVQCAIEKALTKITHLDRKELSVVGAGRTDTGVHAWGQVAHFFTPFNYDSLD 85
Query: 125 SIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVY 184
+HAA NGLLP DIRVRE+S A P+FHARFSAK KIY Y IYN + MDPF R++ YHS Y
Sbjct: 86 EVHAAFNGLLPSDIRVREVSPASPQFHARFSAKGKIYRYSIYNSSFMDPFLRYHVYHSTY 145
Query: 185 KLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGALLQLEVEGSGF 244
KLN +M +AA YF GKHDF+AF N RNDR+ +P+K++ RFDV E G LL+LEVEGSGF
Sbjct: 146 KLNAAVMAEAARYFTGKHDFTAFANAIRNDRVRDPIKTISRFDVTERGPLLELEVEGSGF 205
Query: 245 LYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEVKYNEEH 304
LYRQVRNMVALLLQIG+EAIPPDIVP+IL T++R+ELAKY S PPHGL LV VKYNE+H
Sbjct: 206 LYRQVRNMVALLLQIGREAIPPDIVPEILETKNRRELAKYTKSTPPHGLSLVSVKYNEDH 265
Query: 305 LRLPAACP 312
L+LP+ CP
Sbjct: 266 LKLPSGCP 273
>gi|222630953|gb|EEE63085.1| hypothetical protein OsJ_17893 [Oryza sativa Japonica Group]
Length = 279
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 147/211 (69%), Positives = 177/211 (83%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+KWR+VIAYDGT++ GWQ+Q SPPTIQC +E AL R+TKL+R++L LVGA RTDTGVHAW
Sbjct: 63 YKWRMVIAYDGTKFKGWQYQPSPPTIQCSIENALTRITKLDRKELCLVGAGRTDTGVHAW 122
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQVAHF TPFSY L+S+H+A+NGLLP +IRVREISAA PEFHAR S +SKIYHYKIYN
Sbjct: 123 GQVAHFTTPFSYHCLDSMHSAINGLLPHEIRVREISAAKPEFHARTSTRSKIYHYKIYNG 182
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
VMDPF HYAYHS YKLN+ MR+AA++FVG HDF++F N NDR+ +P+K + RFDV
Sbjct: 183 PVMDPFHNHYAYHSAYKLNSQAMREAAKHFVGTHDFTSFANAVHNDRVRSPIKKIMRFDV 242
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQI 259
IEMGA+LQLE+EG+GFLYRQVRNM L +
Sbjct: 243 IEMGAILQLEIEGTGFLYRQVRNMAGSSLAV 273
>gi|215737309|dbj|BAG96238.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 223
Score = 324 bits (831), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 152/220 (69%), Positives = 181/220 (82%)
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VAHF TPFSY L+S+H+A+NGLLP +IRVREISAA PEFHAR S +SKIYHYKIYN V
Sbjct: 4 VAHFTTPFSYHCLDSMHSAINGLLPHEIRVREISAAKPEFHARTSTRSKIYHYKIYNGPV 63
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
MDPF HYAYHS YKLN+ MR+AA++FVG HDF++F N NDR+ +P+K + RFDVIE
Sbjct: 64 MDPFHNHYAYHSAYKLNSQAMREAAKHFVGTHDFTSFANAVHNDRVRSPIKKIMRFDVIE 123
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
MGA+LQLE+EG+GFLYRQVRNMVALLLQ+G+EA+PPDIV KI+A +DRKELAK ALSAPP
Sbjct: 124 MGAILQLEIEGTGFLYRQVRNMVALLLQVGREALPPDIVAKIIAARDRKELAKVALSAPP 183
Query: 291 HGLCLVEVKYNEEHLRLPAACPLSSFGRHHSVRKCKLPFY 330
HGL L+ V Y++E L+ P P SFGR H + KCKL FY
Sbjct: 184 HGLYLMSVNYDKEMLQPPEGAPHISFGRTHQISKCKLLFY 223
>gi|413937483|gb|AFW72034.1| pseudouridylate synthase [Zea mays]
Length = 271
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 154/221 (69%), Positives = 175/221 (79%)
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVAHF TPFSY L SIH+A+NGLLPP+IRVREISAA PEFHAR S KSK+Y YKIYN+A
Sbjct: 51 QVAHFTTPFSYSCLSSIHSAMNGLLPPEIRVREISAARPEFHARSSTKSKVYRYKIYNEA 110
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+MDPF HYAYHS YKLN M++AA YFVG HDF++F N ND P K + RFDV
Sbjct: 111 IMDPFHNHYAYHSAYKLNPHAMQEAANYFVGIHDFTSFANAAHNDGERRPTKKITRFDVT 170
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
EMGA+LQLEVEG+GFLYRQVRNMVALLLQ+GKEA+PPDIVP I+A +DRKELAK ALSAP
Sbjct: 171 EMGAVLQLEVEGTGFLYRQVRNMVALLLQVGKEALPPDIVPAIIAARDRKELAKVALSAP 230
Query: 290 PHGLCLVEVKYNEEHLRLPAACPLSSFGRHHSVRKCKLPFY 330
PHGL L+ V Y+EE L+ P P SFGR H + KCKL Y
Sbjct: 231 PHGLYLMSVNYDEEILKPPEGSPPISFGRTHHLSKCKLTLY 271
>gi|413937482|gb|AFW72033.1| pseudouridylate synthase [Zea mays]
Length = 223
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 153/220 (69%), Positives = 174/220 (79%)
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VAHF TPFSY L SIH+A+NGLLPP+IRVREISAA PEFHAR S KSK+Y YKIYN+A+
Sbjct: 4 VAHFTTPFSYSCLSSIHSAMNGLLPPEIRVREISAARPEFHARSSTKSKVYRYKIYNEAI 63
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
MDPF HYAYHS YKLN M++AA YFVG HDF++F N ND P K + RFDV E
Sbjct: 64 MDPFHNHYAYHSAYKLNPHAMQEAANYFVGIHDFTSFANAAHNDGERRPTKKITRFDVTE 123
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
MGA+LQLEVEG+GFLYRQVRNMVALLLQ+GKEA+PPDIVP I+A +DRKELAK ALSAPP
Sbjct: 124 MGAVLQLEVEGTGFLYRQVRNMVALLLQVGKEALPPDIVPAIIAARDRKELAKVALSAPP 183
Query: 291 HGLCLVEVKYNEEHLRLPAACPLSSFGRHHSVRKCKLPFY 330
HGL L+ V Y+EE L+ P P SFGR H + KCKL Y
Sbjct: 184 HGLYLMSVNYDEEILKPPEGSPPISFGRTHHLSKCKLTLY 223
>gi|219888663|gb|ACL54706.1| unknown [Zea mays]
Length = 271
Score = 316 bits (810), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 153/221 (69%), Positives = 174/221 (78%)
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVAHF TPFSY L SIH+A+NGL PP+IRVREISAA PEFHAR S KSK+Y YKIYN+A
Sbjct: 51 QVAHFTTPFSYSCLSSIHSAMNGLPPPEIRVREISAARPEFHARSSTKSKVYRYKIYNEA 110
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+MDPF HYAYHS YKLN M++AA YFVG HDF++F N ND P K + RFDV
Sbjct: 111 IMDPFHNHYAYHSAYKLNPHAMQEAANYFVGIHDFTSFANAAHNDGERRPTKKITRFDVT 170
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
EMGA+LQLEVEG+GFLYRQVRNMVALLLQ+GKEA+PPDIVP I+A +DRKELAK ALSAP
Sbjct: 171 EMGAVLQLEVEGTGFLYRQVRNMVALLLQVGKEALPPDIVPAIIAARDRKELAKVALSAP 230
Query: 290 PHGLCLVEVKYNEEHLRLPAACPLSSFGRHHSVRKCKLPFY 330
PHGL L+ V Y+EE L+ P P SFGR H + KCKL Y
Sbjct: 231 PHGLYLMSVNYDEEILKPPEGSPPISFGRTHHLSKCKLTLY 271
>gi|297789719|ref|XP_002862797.1| hypothetical protein ARALYDRAFT_920264 [Arabidopsis lyrata subsp.
lyrata]
gi|297308524|gb|EFH39055.1| hypothetical protein ARALYDRAFT_920264 [Arabidopsis lyrata subsp.
lyrata]
Length = 244
Score = 310 bits (794), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 151/241 (62%), Positives = 182/241 (75%), Gaps = 15/241 (6%)
Query: 91 EDLRLVGASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEF 150
ED R++ + T VH + L+S HAALNGLLP DIRVRE+SAAVPEF
Sbjct: 18 EDGRIIIIWKLPTTVHVF--------------LDSFHAALNGLLPKDIRVRELSAAVPEF 63
Query: 151 HARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNV 210
HARFSA+SK+Y Y+IYND MDPFQR++AYH YKLN + MR+ + FVG HD SAF N
Sbjct: 64 HARFSAQSKVYRYQIYNDTFMDPFQRYWAYHCAYKLNASKMRETVDLFVGMHDVSAFANA 123
Query: 211 QRNDRLLNPVKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVP 270
R D + +P+KS+ RF VI+MG+LLQLEVEGSGFLYRQVRNMVALL+ IGKE++ DIVP
Sbjct: 124 TREDGVPDPLKSISRFYVIQMGSLLQLEVEGSGFLYRQVRNMVALLIHIGKESLDSDIVP 183
Query: 271 KILATQDRKELAKY-ALSAPPHGLCLVEVKYNEEHLRLPAACPLSSFGRHHSVRKCKLPF 329
IL T+DR+ LAKY L PPHGLCLV VKY E+HL+LP CP++SFGRHH++ KCKLPF
Sbjct: 184 MILETKDRRVLAKYTTLPVPPHGLCLVSVKYKEDHLKLPLDCPVTSFGRHHTITKCKLPF 243
Query: 330 Y 330
Y
Sbjct: 244 Y 244
>gi|224102643|ref|XP_002312761.1| predicted protein [Populus trichocarpa]
gi|222852581|gb|EEE90128.1| predicted protein [Populus trichocarpa]
Length = 232
Score = 307 bits (786), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 145/205 (70%), Positives = 164/205 (80%), Gaps = 4/205 (1%)
Query: 20 STNKQGVGVVGLEGTNNTVKPPTDDSFPGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVE 79
S + VG G E N +KP D GFKWRL+I+YDGT Y GWQFQ +PPTIQCI+E
Sbjct: 32 SVRVRDVGSGGAEHPNTVLKPTVD----GFKWRLLISYDGTHYKGWQFQQTPPTIQCILE 87
Query: 80 KALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIR 139
KAL R TKLER+DL LVGASRTD GVHAWGQVAHF+TPF+YD L+SIHAALNGLLPPDIR
Sbjct: 88 KALTRATKLERKDLHLVGASRTDGGVHAWGQVAHFVTPFNYDSLDSIHAALNGLLPPDIR 147
Query: 140 VREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFV 199
VREISA VPEFHARFSAK K YHYKI+ND VMDPFQR YAYH +KLN +MR+AA +F+
Sbjct: 148 VREISAVVPEFHARFSAKGKTYHYKIFNDTVMDPFQRLYAYHVTHKLNAAVMREAANHFI 207
Query: 200 GKHDFSAFVNVQRNDRLLNPVKSVF 224
G DFSAFVN RND + NPVK++F
Sbjct: 208 GTRDFSAFVNSSRNDGVPNPVKTIF 232
>gi|242062120|ref|XP_002452349.1| hypothetical protein SORBIDRAFT_04g024110 [Sorghum bicolor]
gi|241932180|gb|EES05325.1| hypothetical protein SORBIDRAFT_04g024110 [Sorghum bicolor]
Length = 201
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 141/201 (70%), Positives = 161/201 (80%)
Query: 130 LNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTT 189
+NGLLPP+IRVREISAA PEFHAR S KSK+Y YKIYN+A+MDPF YAYHS YKLN
Sbjct: 1 MNGLLPPEIRVREISAARPEFHARTSTKSKVYRYKIYNEAIMDPFHNRYAYHSAYKLNPH 60
Query: 190 LMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGALLQLEVEGSGFLYRQV 249
M++AA YFVG HDF++F N NDR K + RFDV EMGA+LQLEVEG+GFLYRQV
Sbjct: 61 AMQEAANYFVGTHDFTSFANAAHNDRERRSTKKITRFDVTEMGAVLQLEVEGTGFLYRQV 120
Query: 250 RNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEVKYNEEHLRLPA 309
RNMVALLLQ+GKEA+PPDIVP I+A +DRKELAK ALSAPPHGLCL+ V Y+EE L+ P
Sbjct: 121 RNMVALLLQVGKEALPPDIVPAIIAVRDRKELAKVALSAPPHGLCLMSVNYDEEILKPPE 180
Query: 310 ACPLSSFGRHHSVRKCKLPFY 330
P SFGR H + KCKLPFY
Sbjct: 181 GSPPVSFGRTHHLSKCKLPFY 201
>gi|219363303|ref|NP_001136956.1| uncharacterized protein LOC100217116 [Zea mays]
gi|194697754|gb|ACF82961.1| unknown [Zea mays]
gi|413937485|gb|AFW72036.1| pseudouridylate synthase [Zea mays]
Length = 201
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 139/201 (69%), Positives = 159/201 (79%)
Query: 130 LNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTT 189
+NGLLPP+IRVREISAA PEFHAR S KSK+Y YKIYN+A+MDPF HYAYHS YKLN
Sbjct: 1 MNGLLPPEIRVREISAARPEFHARSSTKSKVYRYKIYNEAIMDPFHNHYAYHSAYKLNPH 60
Query: 190 LMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGALLQLEVEGSGFLYRQV 249
M++AA YFVG HDF++F N ND P K + RFDV EMGA+LQLEVEG+GFLYRQV
Sbjct: 61 AMQEAANYFVGIHDFTSFANAAHNDGERRPTKKITRFDVTEMGAVLQLEVEGTGFLYRQV 120
Query: 250 RNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEVKYNEEHLRLPA 309
RNMVALLLQ+GKEA+PPDIVP I+A +DRKELAK ALSAPPHGL L+ V Y+EE L+ P
Sbjct: 121 RNMVALLLQVGKEALPPDIVPAIIAARDRKELAKVALSAPPHGLYLMSVNYDEEILKPPE 180
Query: 310 ACPLSSFGRHHSVRKCKLPFY 330
P SFGR H + KCKL Y
Sbjct: 181 GSPPISFGRTHHLSKCKLTLY 201
>gi|413937484|gb|AFW72035.1| hypothetical protein ZEAMMB73_631883 [Zea mays]
Length = 212
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 135/194 (69%), Positives = 155/194 (79%)
Query: 130 LNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTT 189
+NGLLPP+IRVREISAA PEFHAR S KSK+Y YKIYN+A+MDPF HYAYHS YKLN
Sbjct: 1 MNGLLPPEIRVREISAARPEFHARSSTKSKVYRYKIYNEAIMDPFHNHYAYHSAYKLNPH 60
Query: 190 LMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGALLQLEVEGSGFLYRQV 249
M++AA YFVG HDF++F N ND P K + RFDV EMGA+LQLEVEG+GFLYRQV
Sbjct: 61 AMQEAANYFVGIHDFTSFANAAHNDGERRPTKKITRFDVTEMGAVLQLEVEGTGFLYRQV 120
Query: 250 RNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEVKYNEEHLRLPA 309
RNMVALLLQ+GKEA+PPDIVP I+A +DRKELAK ALSAPPHGL L+ V Y+EE L+ P
Sbjct: 121 RNMVALLLQVGKEALPPDIVPAIIAARDRKELAKVALSAPPHGLYLMSVNYDEEILKPPE 180
Query: 310 ACPLSSFGRHHSVR 323
P SFGR H +R
Sbjct: 181 GSPPISFGRTHHLR 194
>gi|168009447|ref|XP_001757417.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691540|gb|EDQ77902.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 299
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 132/254 (51%), Positives = 171/254 (67%)
Query: 65 WQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFITPFSYDGLE 124
WQ Q + +IQ VE AL + T+L R++L+LVGA RTD GVHAWGQVAHF TP + LE
Sbjct: 36 WQIQKNYVSIQEKVEDALSKFTRLPRDELKLVGAGRTDAGVHAWGQVAHFTTPTCFCDLE 95
Query: 125 SIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVY 184
+H +LNG+LPPDIR+ E+S+ P+FHAR+SA K Y YK Y VMDPFQ YAYH
Sbjct: 96 PLHTSLNGILPPDIRILEVSSVQPDFHARYSACRKTYQYKAYVSPVMDPFQHAYAYHIKN 155
Query: 185 KLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGALLQLEVEGSGF 244
+N M +AA YFVG H+FSAF N + + ++ + F V +G L EVEG F
Sbjct: 156 SVNIAAMEEAASYFVGTHNFSAFANHSADTASRDTLRDLLSFTVSSIGPQLLFEVEGKSF 215
Query: 245 LYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEVKYNEEH 304
+Y+QVRNMV LL+Q+GKE +PP +V IL T+DR+ELAK + AP HGL L+ V Y+++
Sbjct: 216 MYKQVRNMVGLLVQVGKELVPPSMVRTILLTEDRRELAKISPVAPAHGLYLMSVGYDDKV 275
Query: 305 LRLPAACPLSSFGR 318
LR P +SFGR
Sbjct: 276 LRPVPNAPKASFGR 289
>gi|302757930|ref|XP_002962388.1| hypothetical protein SELMODRAFT_78854 [Selaginella moellendorffii]
gi|300169249|gb|EFJ35851.1| hypothetical protein SELMODRAFT_78854 [Selaginella moellendorffii]
Length = 268
Score = 267 bits (682), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 128/261 (49%), Positives = 177/261 (67%), Gaps = 2/261 (0%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
KWR+V++YDGTR++GWQ+Q PT+Q ++E AL ++T+ RE+L + ASRTD GVHA G
Sbjct: 1 KWRIVVSYDGTRFSGWQYQPDFPTVQGLIEDALTKLTRYTREELLMAAASRTDAGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVAHF +P L IH LNG LP +IRVREIS A FHA+ A++K Y YK++
Sbjct: 61 QVAHFHSPACIGDLSRIHRGLNGTLPHEIRVREISPAKSSFHAQACARTKRYQYKLFVAP 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
VMDP R YAYH +L+ M +A YFVGKHDFS F N L NPV+ + RFD++
Sbjct: 121 VMDPLLRLYAYHVPERLDVAAMAEACGYFVGKHDFSTFSNSSTLRPLQNPVREILRFDLL 180
Query: 230 EM--GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G +L E+EG+GF ++Q+RNMV L++ IGK ++P++LA +DR++LA+ +++
Sbjct: 181 EQASGPVLCFEIEGTGFFHKQIRNMVGLIVAIGKGEHEARVIPELLAMKDRQKLARVSIT 240
Query: 288 APPHGLCLVEVKYNEEHLRLP 308
AP GL LV V Y++ L LP
Sbjct: 241 APSRGLTLVSVHYDQSDLDLP 261
>gi|302764370|ref|XP_002965606.1| hypothetical protein SELMODRAFT_84331 [Selaginella moellendorffii]
gi|300166420|gb|EFJ33026.1| hypothetical protein SELMODRAFT_84331 [Selaginella moellendorffii]
Length = 269
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 127/262 (48%), Positives = 178/262 (67%), Gaps = 3/262 (1%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
KWR+V++YDGTR++GWQ+Q PT+Q ++E AL ++T+ RE+L + ASRTD GVHA G
Sbjct: 1 KWRIVVSYDGTRFSGWQYQPDFPTVQGLIEDALTKLTRYTREELLMAAASRTDAGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVAHF +P L IH LNG LP +IRVREIS A FHA+ A++K Y YK++
Sbjct: 61 QVAHFHSPACIGDLSRIHRGLNGTLPHEIRVREISPAKSSFHAQACARTKRYQYKLFVAP 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
VMDP R YAYH +L+ M +A YFVGKHDFS F N L NPV+ + RF+++
Sbjct: 121 VMDPLLRLYAYHVPERLDVAAMAEACGYFVGKHDFSTFSNSSTLRPLQNPVREILRFELL 180
Query: 230 E---MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
E +G +L E+EG+GF ++Q+RNMV L++ IGK ++P++LA +DR++LA+ ++
Sbjct: 181 EQASLGPVLCFEIEGTGFFHKQIRNMVGLIVAIGKGEHQARVIPELLAMKDRQKLARVSI 240
Query: 287 SAPPHGLCLVEVKYNEEHLRLP 308
+AP GL LV V Y++ L LP
Sbjct: 241 TAPSRGLTLVSVHYDQSDLDLP 262
>gi|338174192|ref|YP_004651002.1| tRNA pseudouridine synthase A 1 [Parachlamydia acanthamoebae UV-7]
gi|336478550|emb|CCB85148.1| tRNA pseudouridine synthase A 1 [Parachlamydia acanthamoebae UV-7]
Length = 256
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/260 (43%), Positives = 159/260 (61%), Gaps = 7/260 (2%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+K+++ +AYDGT Y+GWQ Q + IQ IVEK + K+ R+ +R+V + RTD GVHA
Sbjct: 3 YKFKITLAYDGTHYSGWQIQPNALAIQEIVEK---EIGKIVRQPVRVVASGRTDAGVHAR 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQVAHF T D L ++NGLLP DIRV++I P+FHA++S K YHY +
Sbjct: 60 GQVAHFSTDAEID-LRRFLVSINGLLPKDIRVKDICQVPPDFHAQYSVSGKAYHYHLTLS 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
V PF R YA+H KL+ + ++ AA+ FVG HDF++F N + N V+++ R DV
Sbjct: 119 RVQSPFSRFYAWHIRQKLDLSQLQAAAQLFVGTHDFTSFANEAHREHPQNAVRTIKRVDV 178
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
I +LE EG GFLY+ VRNMV +L+++ P +P I A +DRK+ K +A
Sbjct: 179 IMEDEGCRLEFEGDGFLYKMVRNMVGILIEVATGYRPITDIPAIFAAKDRKKAGK---AA 235
Query: 289 PPHGLCLVEVKYNEEHLRLP 308
PPHGL L +V + E L P
Sbjct: 236 PPHGLFLHQVNFPEGVLSFP 255
>gi|46445962|ref|YP_007327.1| tRNA pseudouridylate synthase I [Candidatus Protochlamydia
amoebophila UWE25]
gi|51316632|sp|Q6MEE7.1|TRUA1_PARUW RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 1; AltName: Full=tRNA-uridine
isomerase I 1
gi|46399603|emb|CAF23052.1| putative tRNA pseudouridylate synthase I [Candidatus Protochlamydia
amoebophila UWE25]
Length = 256
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 107/255 (41%), Positives = 163/255 (63%), Gaps = 7/255 (2%)
Query: 51 WRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
++L IAYDGT Y+GWQ Q + +IQ +++AL + L++E + LVG+ RTD GVHA GQ
Sbjct: 4 YKLTIAYDGTNYSGWQIQPNASSIQQKIQEALCIL--LKKEKVVLVGSGRTDAGVHAKGQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VAHF Y L +H +LNGLLP DIR++ + P FH+++SA K YHY ++ + V
Sbjct: 62 VAHFHFQ-DYIDLSRLHVSLNGLLPRDIRIKAVEPVSPRFHSQYSAIRKEYHYYLHLNKV 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVN-VQRNDRLLNPVKSVFRFDVI 229
MDPFQR Y++H K++ ++++AA F G HDF++F N R NPV++++R D+
Sbjct: 121 MDPFQRLYSWHFQRKIDVNILKKAAILFTGTHDFTSFANEAHRGTAAKNPVRTLYRLDIK 180
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
L+LE EG GFLY+ VRN+V L+ + + + +I A ++R++ +L+AP
Sbjct: 181 PNEGGLRLEFEGDGFLYKMVRNIVGTLMDVASHKRAIEEINQIFAAKNRRQA---SLAAP 237
Query: 290 PHGLCLVEVKYNEEH 304
P GL L++V Y E+
Sbjct: 238 PEGLFLIQVFYENEN 252
>gi|255083272|ref|XP_002504622.1| predicted protein [Micromonas sp. RCC299]
gi|226519890|gb|ACO65880.1| predicted protein [Micromonas sp. RCC299]
Length = 253
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 112/254 (44%), Positives = 155/254 (61%), Gaps = 9/254 (3%)
Query: 51 WRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+ L +AYDG Y G+Q+Q T+Q VE+AL ++T +RE L + + RTDTGVHA GQ
Sbjct: 3 YALKLAYDGEAYLGFQYQPKGKTVQGEVERALTKLTGHDREFLGMQASGRTDTGVHARGQ 62
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
+ HF T LE H +LNG++P D+R E+ P FHARF A K YHY + V
Sbjct: 63 ILHFYTKEPVSDLERFHKSLNGIMPKDVRCVEVMRPHPAFHARFHAVRKTYHYFLDPRLV 122
Query: 171 MDPFQRHYAYHSVYK-LNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLL-NPVKSVFRFDV 228
+DPF R +A H +K + +R+AA FVG HDF++F N R+ L+ +P ++++RFDV
Sbjct: 123 LDPFVRRHALHCGWKPPSVERLREAAAVFVGTHDFTSFSNKSRDKTLVRSPTRTIYRFDV 182
Query: 229 IEM-GALLQLEVEGSGFLYRQVRNMV-ALLLQIGKE--AIPPDIVPKILATQDRKELAKY 284
+E L++LEVEG+GFLYR VRNMV AL+L E + + +L +DR
Sbjct: 183 VEQPDGLIRLEVEGNGFLYRMVRNMVGALMLAATGEDGKFTAEDLRDMLEGKDR---GVA 239
Query: 285 ALSAPPHGLCLVEV 298
+ APPHGL L EV
Sbjct: 240 PMGAPPHGLFLHEV 253
>gi|145356339|ref|XP_001422390.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582632|gb|ABP00707.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 286
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 118/268 (44%), Positives = 154/268 (57%), Gaps = 15/268 (5%)
Query: 51 WRLVIAYDGTRYAGWQFQTSP-PTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ L I+YDG RY G+Q+Q PTIQ +E+AL ++T ++RE LRL A RTD GVHA G
Sbjct: 18 YALKISYDGERYNGFQYQGEDVPTIQRELERALAKLTGIDRERLRLGAAGRTDAGVHARG 77
Query: 110 QVAHFITPFSY-DGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
QVAHF S + L A+NG+LP DIRV P FH+RF A K YHY +
Sbjct: 78 QVAHFYCEKSLGEDLTRCQKAMNGMLPKDIRVDAFWEPHPLFHSRFHASGKTYHYYVDAR 137
Query: 169 AVMDPFQRHYAYHSVYK-LNTTLMRQAAEYFVGKHDFSAFVNVQRN----DRLLNPVKSV 223
A PF R YA+ ++ + L+RQAA+ FVG D+ F N R+ DR N +++
Sbjct: 138 ATSSPFTRKYAHQVGWRPCDVELLRQAAQLFVGTMDYKGFCNTSRDKSNEDR--NTTRTI 195
Query: 224 FRFDVIEMGA---LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKE 280
RFDV E A L++LEVEG GFLYRQVRNMV LL + + ++ T+DR
Sbjct: 196 RRFDVFEDAADDGLIRLEVEGDGFLYRQVRNMVGALLVVASGKHDLAYLRTLIETKDR-- 253
Query: 281 LAKYALSAPPHGLCLVEVKYNEEHLRLP 308
++ + AP GL L EV Y E L P
Sbjct: 254 -SRAPMGAPARGLFLHEVFYPTEVLARP 280
>gi|414153603|ref|ZP_11409926.1| tRNA pseudouridine synthase A [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
gi|411455001|emb|CCO07830.1| tRNA pseudouridine synthase A [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
Length = 250
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 104/251 (41%), Positives = 150/251 (59%), Gaps = 10/251 (3%)
Query: 52 RLVIAYDGTRYAGWQFQ--TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+L +AYDGT Y G+Q Q T T+Q ++E L +K+ ++ ++++GA RTD GVHAWG
Sbjct: 8 KLTVAYDGTNYHGFQEQRGTGLATVQEVLESTL---SKIAKDTIQVIGAGRTDAGVHAWG 64
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV +F + E IH A+N LLP DI+V + +FHARFSA +K Y Y IYN
Sbjct: 65 QVVNFRSGRWPVPTEKIHLAMNALLPDDIKVLQAEEVPLDFHARFSATAKTYRYSIYNHR 124
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
VM P R Y YH L+ M++ A Y VG HDF +F + + + V++++R +++
Sbjct: 125 VMSPLHRLYCYHEPRLLDVRAMQEGAAYLVGSHDFKSF--QAQGTPVKDTVRTIYRAEIL 182
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
L+ L + G+GFLY VR + LL IG IPP + +I+A +DR LA + P
Sbjct: 183 SEPPLIHLYLRGNGFLYNMVRIITGTLLDIGMGKIPPSAMAQIIAARDRT-LA--GTTVP 239
Query: 290 PHGLCLVEVKY 300
P GLCL+EV+Y
Sbjct: 240 PQGLCLMEVEY 250
>gi|377832251|ref|ZP_09815213.1| tRNA pseudouridine synthase A [Lactobacillus mucosae LM1]
gi|377553887|gb|EHT15604.1| tRNA pseudouridine synthase A [Lactobacillus mucosae LM1]
Length = 264
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 159/258 (61%), Gaps = 8/258 (3%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+++++ AYDGT ++G+Q Q + T++ ++ A+ ++ K L ++G+ RTD GVHA
Sbjct: 2 YRYKITFAYDGTNFSGFQIQPNKRTVEQTLKNAVNKIAKNPEPPLSVIGSGRTDAGVHAL 61
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
QVAHF P+ G +S+ ALN LLP DI V++ P+FHARF+A SK Y Y++
Sbjct: 62 NQVAHFDCPYKL-GNDSMRKALNSLLPLDIIVKKAELVSPDFHARFNAHSKHYRYRVDQS 120
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
++PF+R+Y H Y ++ M++AA+ VG+HDF++F V + L+ V+++++ DV
Sbjct: 121 DFVNPFKRNYTAHFKYPVDVAKMQKAAQDLVGEHDFTSF--VASGSQALSNVRTIYQADV 178
Query: 229 --IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
E + + G+GFLY QVR MVA LL+IG P D V ++LA +DR + +
Sbjct: 179 HRDEANNEIVFDFVGNGFLYNQVRIMVAFLLEIGSNQRPVDDVIRVLAAKDRNQA---RM 235
Query: 287 SAPPHGLCLVEVKYNEEH 304
+AP GL LV V Y +++
Sbjct: 236 TAPASGLYLVSVDYGDQN 253
>gi|169830466|ref|YP_001716448.1| tRNA pseudouridine synthase A [Candidatus Desulforudis audaxviator
MP104C]
gi|238688213|sp|B1I1B5.1|TRUA_DESAP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|169637310|gb|ACA58816.1| tRNA pseudouridine synthase A [Candidatus Desulforudis audaxviator
MP104C]
Length = 250
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/252 (42%), Positives = 148/252 (58%), Gaps = 10/252 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSP--PTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
RL +AYDGT Y G+Q Q+ PTIQ +E+ L +L L++ GASRTD GVHA G
Sbjct: 5 RLTLAYDGTAYHGFQKQSGSGLPTIQETLERCL---AELSGAALKVTGASRTDAGVHARG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV +F+T E I AALNG+LP DI + +FHAR+SA +K Y Y +YN
Sbjct: 62 QVVNFVTGRWGIPTERIPAALNGVLPGDIAALDAREVPADFHARYSAVAKTYSYTLYNHP 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
V PFQR Y+ H L+ MR AA + +G+HDFS F R + + V+++ R D+
Sbjct: 122 VRSPFQRLYSLHVPRALDLRAMRLAARHLMGRHDFSTFQAAGRP--VQSAVRTLTRADIE 179
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
L++L GFLY VR M LL++G E + P+ +P I+A+ DR A+ + P
Sbjct: 180 AQAPLVRLVFRADGFLYNMVRIMAGTLLEVGLERLDPEALPDIIASGDR---ARAGPTVP 236
Query: 290 PHGLCLVEVKYN 301
PHGLCL EV+Y+
Sbjct: 237 PHGLCLEEVEYD 248
>gi|338811094|ref|ZP_08623330.1| tRNA pseudouridine synthase A [Acetonema longum DSM 6540]
gi|337276917|gb|EGO65318.1| tRNA pseudouridine synthase A [Acetonema longum DSM 6540]
Length = 245
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 107/249 (42%), Positives = 149/249 (59%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
RL I+YDG+ Y G+Q Q + TIQ I+E+ R+++L L++ GA RTD GVHAWGQV
Sbjct: 6 RLTISYDGSNYHGFQRQQNALTIQEILEE---RLSRLFGHHLKITGAGRTDAGVHAWGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
+F T + +E I AA NGLLP DI V+ + +FHAR+SAKSKIY YK+YN +
Sbjct: 63 VNFFTTGTIP-VERIPAAANGLLPRDIVVKAAATVDADFHARYSAKSKIYIYKVYNHLLP 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
DPF R+ A+H L+ MRQA G HDFSAF +PV+++ + D +
Sbjct: 122 DPFYRNLAWHIKGSLDLAKMRQALAVVQGTHDFSAFRAAGGA--AADPVRTMLQTDCRQQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
+ L G+GFLY VRN+ L++IG P + + ILA++DR + ++APP
Sbjct: 180 SGTIDLLFHGTGFLYHMVRNLTGTLVEIGLGKRPHEDMGPILASKDRNQA---GITAPPQ 236
Query: 292 GLCLVEVKY 300
GL L E+ Y
Sbjct: 237 GLYLSEIFY 245
>gi|227530236|ref|ZP_03960285.1| tRNA pseudouridine synthase A [Lactobacillus vaginalis ATCC 49540]
gi|227349848|gb|EEJ40139.1| tRNA pseudouridine synthase A [Lactobacillus vaginalis ATCC 49540]
Length = 256
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 160/257 (62%), Gaps = 8/257 (3%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+++++ AYDG+ ++G+Q Q T++ +++ A+ ++ K ++ ++G+ RTD GVHA
Sbjct: 2 YRYKITFAYDGSNFSGFQIQPHKRTVEQVLKNAVNKIAKHPTPEIPVIGSGRTDAGVHAL 61
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
QVAHF P+ ES+ ALN +LP DI +++ +FHAR+SA +K Y Y++
Sbjct: 62 NQVAHFDIPYHLSN-ESMRKALNSILPLDILIKKAELVDSDFHARYSAHNKTYRYRVDQG 120
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
++PF+R+Y H Y L+ TLMR+AA+ F+G+HDF++F V + + V++V++ D+
Sbjct: 121 EFVNPFKRNYTAHFKYPLDLTLMRKAAKNFIGEHDFTSF--VASGSQAKSNVRTVYKIDI 178
Query: 229 I--EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
++ + + G+GFLY Q+R MVA LL+IG + P D V ++LA +DR + +
Sbjct: 179 KRDKLRNEVVFDFTGNGFLYNQIRIMVAFLLEIGSKQRPVDDVKRVLAAKDRTQA---RM 235
Query: 287 SAPPHGLCLVEVKYNEE 303
+AP GL LV V Y +
Sbjct: 236 TAPASGLYLVSVDYGND 252
>gi|20808627|ref|NP_623798.1| tRNA pseudouridine synthase A [Thermoanaerobacter tengcongensis
MB4]
gi|24212532|sp|Q8R7Y7.1|TRUA_THETN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|20517260|gb|AAM25402.1| Pseudouridylate synthase (tRNA psi55) [Thermoanaerobacter
tengcongensis MB4]
Length = 240
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 106/248 (42%), Positives = 149/248 (60%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L+I YDGT Y GWQ+Q + T+Q ++EKA+ +VT E + L+G+SRTDTGVHA QVA
Sbjct: 2 LIIEYDGTNYHGWQYQKNAITVQEVLEKAIEKVTG---EKVNLIGSSRTDTGVHALYQVA 58
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T E + ALN +LP D+ V + FHAR+SA+SK Y Y I N
Sbjct: 59 NFKTKTKIPP-EKLPYALNAVLPDDVVVVKAKEVDKSFHARYSARSKRYRYLILNRQFPM 117
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P R+Y +H Y L+ M++AA +F G HDFSAF ++ +NPVK++F V + G
Sbjct: 118 PTMRNYCWHVPYPLDVEAMKKAAFFFRGTHDFSAF--KASGNKKVNPVKTIFDLTVEKEG 175
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
L+++EVE GFLY VR +V L+ +G I +P I+ ++DR K ++APP G
Sbjct: 176 DLIKIEVEADGFLYNMVRIIVGTLVYVGLGKIKAGEIPAIIESKDR---TKAGITAPPQG 232
Query: 293 LCLVEVKY 300
L LV + Y
Sbjct: 233 LYLVRIVY 240
>gi|427393155|ref|ZP_18887058.1| tRNA pseudouridine synthase A [Alloiococcus otitis ATCC 51267]
gi|425730737|gb|EKU93569.1| tRNA pseudouridine synthase A [Alloiococcus otitis ATCC 51267]
Length = 264
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 148/253 (58%), Gaps = 8/253 (3%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
++++VIAYDGTRY+G+Q Q + T+Q +E AL ++ K E +R+ ASRTD GVHA
Sbjct: 3 LRYKMVIAYDGTRYSGYQTQVNALTVQDEIEGALQKLAKGEF--VRIHAASRTDAGVHAR 60
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQVAHF PF + E + LN LLP DI +R + FH+RF AK K Y Y + N
Sbjct: 61 GQVAHFDFPFEIES-EGLQRGLNTLLPGDISIRSLDRVGGNFHSRFDAKGKHYRYWLSNS 119
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
+MDPF R YA H Y L+ ++ A + VG HDF++F Q + + + V++++R D+
Sbjct: 120 PIMDPFNRLYACHHPYPLDLEAVQAALAHLVGCHDFTSFAASQTD--VKDKVRTLYRADL 177
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+G G GFLY VR MV ++ G+ I PD VP I+ +DR + K +
Sbjct: 178 EVLGHDWIFNFVGDGFLYNMVRIMVGTVVAAGEGRIAPDQVPDIIQAKDRSQAGK---TM 234
Query: 289 PPHGLCLVEVKYN 301
P GLCL+++ Y
Sbjct: 235 PSKGLCLMKLYYG 247
>gi|282890286|ref|ZP_06298816.1| hypothetical protein pah_c014o179 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281499943|gb|EFB42232.1| hypothetical protein pah_c014o179 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 231
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/236 (43%), Positives = 141/236 (59%), Gaps = 7/236 (2%)
Query: 73 TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNG 132
IQ IVEK + K+ R+ +R+V + RTD GVHA GQVAHF T D L ++NG
Sbjct: 2 AIQEIVEK---EIGKIVRQPVRVVASGRTDAGVHARGQVAHFSTNAEID-LRRFLVSING 57
Query: 133 LLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMR 192
LLP DIRV++I P+FHA++S K YHY + V PF R YA+H KL+ + ++
Sbjct: 58 LLPKDIRVKDICQVPPDFHAQYSVSGKAYHYHLTLSRVQSPFSRFYAWHIRQKLDLSQLQ 117
Query: 193 QAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNM 252
AA+ FVG HDF++F N + N V+++ R DVI +LE EG GFLY+ VRNM
Sbjct: 118 VAAQLFVGTHDFTSFANEAHREHPQNAVRTIKRVDVIMEDEGCRLEFEGDGFLYKMVRNM 177
Query: 253 VALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEVKYNEEHLRLP 308
V +L+++ P +P I A +DRK+ K +APPHGL L +V + E L P
Sbjct: 178 VGILIEVATGYRPITDIPAIFAAKDRKKAGK---AAPPHGLFLHQVNFPEGVLSFP 230
>gi|323703515|ref|ZP_08115161.1| tRNA pseudouridine synthase A [Desulfotomaculum nigrificans DSM
574]
gi|323531506|gb|EGB21399.1| tRNA pseudouridine synthase A [Desulfotomaculum nigrificans DSM
574]
Length = 249
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/251 (41%), Positives = 148/251 (58%), Gaps = 10/251 (3%)
Query: 52 RLVIAYDGTRYAGWQFQ--TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+L +AYDGT Y G+Q Q T T+Q ++E AL +K+ E ++++GA RTD GVHA G
Sbjct: 7 KLTVAYDGTNYHGFQEQRGTGLATVQEVLEAAL---SKVANETVQVIGAGRTDAGVHARG 63
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV +F + E IH A+N LLP DI V + +FHARFSA +K Y Y IYN
Sbjct: 64 QVVNFRSTNWPVPTEKIHLAVNSLLPDDIAVIKAEEVPLDFHARFSATAKTYRYSIYNHR 123
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
VM P R YAYH L+ MRQAA+Y +G HDF +F + + + V++++R +++
Sbjct: 124 VMSPLHRLYAYHEPRPLDIEAMRQAAQYLLGTHDFKSF--QAQGTPVKDTVRTIYRAELV 181
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
L+ L + G+GFLY VR + LL +GK P + I+ ++R + + P
Sbjct: 182 SEPPLIHLYLRGNGFLYNMVRIITGTLLDVGKGKKSPPEMKSIIEARNR---TRAGTTVP 238
Query: 290 PHGLCLVEVKY 300
PHGLCL+EV+Y
Sbjct: 239 PHGLCLMEVEY 249
>gi|375087869|ref|ZP_09734214.1| tRNA pseudouridine synthase A [Dolosigranulum pigrum ATCC 51524]
gi|374563579|gb|EHR34891.1| tRNA pseudouridine synthase A [Dolosigranulum pigrum ATCC 51524]
Length = 260
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 102/253 (40%), Positives = 151/253 (59%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++L +AYDGT Y+G+Q Q + PTIQ +E+AL R+ K E +R+ GA RTD GVHA G
Sbjct: 3 RYKLTVAYDGTNYSGFQVQPNVPTIQGELEQALQRIAKGEF--VRIHGAGRTDAGVHAAG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF PF Y E + A++ P DI +++ FHAR+ A K+Y Y++Y
Sbjct: 61 QVCHFNFPF-YISEEGMLRAIDANTPTDIVPQKVERVSDTFHARYDACGKMYEYRLYTGK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
DPF+R YAYH + LN ++QA E+F G+HDF++F V N + + V+ ++ +I
Sbjct: 120 QADPFKRLYAYHHPHALNVERIKQALEHFKGEHDFTSFSAV--NAEVDSRVRELYEACLI 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G L GSGFLY +R MV LL + + PD +P IL ++R+ ++ +A
Sbjct: 178 QEGTDYILRFSGSGFLYNMIRIMVGTLLDVSDGKLDPDAIPDILQAKERQAASR---TAS 234
Query: 290 PHGLCLVEVKYNE 302
P GL +VEV Y +
Sbjct: 235 PVGLKMVEVYYKD 247
>gi|157363557|ref|YP_001470324.1| tRNA pseudouridine synthase ACD [Thermotoga lettingae TMO]
gi|166991166|sp|A8F526.1|TRUA_THELT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|157314161|gb|ABV33260.1| tRNA pseudouridine synthase A [Thermotoga lettingae TMO]
Length = 245
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 101/248 (40%), Positives = 151/248 (60%), Gaps = 10/248 (4%)
Query: 54 VIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAH 113
+++YDGT + G+Q Q T+Q + E+AL R+ K + + + A RTDTGVHA GQ+
Sbjct: 7 IVSYDGTNFCGFQVQKDVRTVQGMFEQALERILK---QRVITIAAGRTDTGVHANGQIVC 63
Query: 114 FITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDP 173
F D ES+ A+N LP DI VR++ FH RF AK +IYHY IYN +
Sbjct: 64 FDCYLDIDE-ESMKNAMNANLPDDIYVRKVVEVDKNFHPRFDAKRRIYHYLIYNSQEPNL 122
Query: 174 FQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM-G 232
F R+YA+ YKLN MR+AA++F G+HDF +F ++ D N V++++R V+++ G
Sbjct: 123 FIRNYAWWFPYKLNICKMREAAKFFEGEHDFRSF--MKSGDHRENTVRTIYRVRVLQLRG 180
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
++ + VEG FL R VRNMV L+++G P+ + ++L +DR +K A++APPHG
Sbjct: 181 GIILIRVEGRSFLRRMVRNMVGALVKVGVGEWKPEDISRVLELKDR---SKAAVTAPPHG 237
Query: 293 LCLVEVKY 300
L L V +
Sbjct: 238 LYLYAVDF 245
>gi|333922481|ref|YP_004496061.1| tRNA pseudouridine synthase A [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|333748042|gb|AEF93149.1| tRNA pseudouridine synthase A [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 249
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 151/252 (59%), Gaps = 12/252 (4%)
Query: 52 RLVIAYDGTRYAGWQFQ--TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+L +AYDGT Y G+Q Q T T+Q ++E AL +K+ E ++++GA RTD GVHA G
Sbjct: 7 KLTVAYDGTNYHGFQEQRGTGLATVQEVLEAAL---SKVANETVQVIGAGRTDAGVHARG 63
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV +F + E IH A+N LLP DI V + +FHARFSA +K Y Y IYN
Sbjct: 64 QVVNFRSTNWPVPTEKIHLAVNSLLPDDIAVIKAEEVPLDFHARFSATAKTYRYSIYNHR 123
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
VM P R YAYH L+ MRQAA+Y +G HDF +F + + + V++++R +++
Sbjct: 124 VMSPLHRLYAYHEPRPLDIEAMRQAAQYLLGTHDFKSF--QAQGTPVKDTVRTIYRAELV 181
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGK-EAIPPDIVPKILATQDRKELAKYALSA 288
L+ L + G+GFLY VR + LL +GK + PP++ I+ ++R + +
Sbjct: 182 SEPPLIHLYLRGNGFLYNMVRIITGTLLDVGKGKKFPPEM-KSIIEARNR---TRAGTTV 237
Query: 289 PPHGLCLVEVKY 300
PPHGLCL+EV+Y
Sbjct: 238 PPHGLCLMEVEY 249
>gi|303288620|ref|XP_003063598.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454666|gb|EEH51971.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 261
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 109/261 (41%), Positives = 153/261 (58%), Gaps = 9/261 (3%)
Query: 51 WRLVIAYDGTRYAGWQFQ-TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ L +AYDG Y G+Q+Q T+Q VEKAL ++T +R+ L + + RTD GVHA G
Sbjct: 3 YALTLAYDGENYLGFQYQPRDAKTVQGEVEKALTKITGEDRDFLGIQASGRTDAGVHARG 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + L ++NG+LP D+RV + P FHARF A K YHY +
Sbjct: 63 QVLHFYARRPIEDLARFQRSMNGVLPRDVRVMKAIRPHPAFHARFHAVRKTYHYYLDTRL 122
Query: 170 VMDPFQRHYAYHSVYK-LNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLL-NPVKSVFRFD 227
MDPF R +A H + + +R+ AE FVG DFSAF N R+ L+ +PV++++RFD
Sbjct: 123 TMDPFLRRHALHVGWNPPDVEKLRRGAECFVGTRDFSAFSNKPRDKTLVRDPVRTIYRFD 182
Query: 228 VIEM--GALLQLEVEGSGFLYRQVRNMV-ALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
V E+ LL+LEVEG+GF+Y+QVRNMV A++ + + P + +L +DR
Sbjct: 183 VNELKGDGLLRLEVEGNGFMYKQVRNMVGAMITAATSKKMQPADIAAMLEGKDR---GVA 239
Query: 285 ALSAPPHGLCLVEVKYNEEHL 305
+ AP HGL L +V Y E L
Sbjct: 240 PMGAPAHGLFLHDVVYPRELL 260
>gi|350264244|ref|YP_004875551.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349597131|gb|AEP84919.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 247
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 106/253 (41%), Positives = 147/253 (58%), Gaps = 7/253 (2%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+ + I+YDG + G+Q Q T+Q +EKAL + K ++ + +V + RTD+GVHA
Sbjct: 1 MRLKCTISYDGHLFNGYQVQPGKRTVQNELEKALAVLHK-SKDRIPVVSSGRTDSGVHAA 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF TP S E ALN LLP DI V++ A FHARFSA K Y Y +Y +
Sbjct: 60 GQVIHFDTPLSIPA-ERWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTE 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
D F+RHYAYH Y LN MR+AA++ +G HDF++F V+ + + V++++ D
Sbjct: 119 KHPDVFKRHYAYHFSYHLNVQNMREAAKHLIGTHDFTSFCAVKT--EVQDKVRTIYELDW 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E LQ+ + GSGFLY VR +V LL G I PD V +LA +DR+ + +A
Sbjct: 177 TETDDGLQMRITGSGFLYNMVRIIVGTLLDAGIGKISPDDVKSMLAAKDREAAGR---TA 233
Query: 289 PPHGLCLVEVKYN 301
P HGL L V Y+
Sbjct: 234 PGHGLYLWNVYYD 246
>gi|18309973|ref|NP_561907.1| tRNA pseudouridine synthase A [Clostridium perfringens str. 13]
gi|24212547|sp|Q8XLQ0.1|TRUA1_CLOPE RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 1; AltName: Full=tRNA-uridine
isomerase I 1
gi|18144651|dbj|BAB80697.1| tRNA-pseudouridine synthase I [Clostridium perfringens str. 13]
Length = 248
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 99/253 (39%), Positives = 148/253 (58%), Gaps = 13/253 (5%)
Query: 52 RLVIAYDGTRYAGWQFQ----TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHA 107
++ + YDG++Y GWQ Q ++ T+Q +EK L TK+ E+++L+G RTD+GVHA
Sbjct: 5 KITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVL---TKMTSEEIQLIGCGRTDSGVHA 61
Query: 108 WGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
VA+F T S LE I +N LP DIRV EI A FHARF+ KSK Y Y I N
Sbjct: 62 KNYVANFKTN-SLMTLEQIIEYINEYLPEDIRVTEIREASERFHARFNVKSKTYEYTIDN 120
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
+ D F R YA+H KL+ M + A+Y +G HDF +F +++ ++ + ++++ +
Sbjct: 121 NKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNK--STLRTINSIE 178
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E +L +++ G+GFL VR MV L+ +G I P + IL ++R AK +
Sbjct: 179 FHENNNILSIKINGNGFLLNMVRIMVGTLVDVGLGKIEPKYINDILEAKER---AKASEK 235
Query: 288 APPHGLCLVEVKY 300
AP HGLCL+E+ Y
Sbjct: 236 APAHGLCLLELNY 248
>gi|337292758|emb|CCB90763.1| trNA pseudouridine synthase A 1 [Waddlia chondrophila 2032/99]
Length = 254
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 104/267 (38%), Positives = 158/267 (59%), Gaps = 16/267 (5%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
K++L+IAYDGT+Y+GWQ Q + +IQ ++E+ L +TK L GA RTD GVHA G
Sbjct: 3 KYKLIIAYDGTQYSGWQMQPNALSIQEVLEEKLKVLTKTRTS---LTGAGRTDAGVHAIG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVAHF ++ + +LNGLLP DIR+ ++ +FHAR+SA +KIY+Y +
Sbjct: 60 QVAHFKVEAPFNP-SLLRLSLNGLLPKDIRIMDVEEVPLDFHARYSATNKIYYYHLNLGP 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVN-VQRNDRLLNPVKSVFRFDV 228
V DPF++ Y+++ LN L+++ Y +G H+FSAF N + NP++++ R V
Sbjct: 119 VQDPFEKQYSWNITNSLNMELLKKGISYLIGTHNFSAFANEANQGAAKKNPIRTLKRISV 178
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ ++LE EG FLY+ VRNM L+ + K + P+ + KIL ++DR+ + +A
Sbjct: 179 VPERIGMRLEFEGESFLYKMVRNMTGTLIDVAKGKLSPEEIKKILESKDRRNAGR---AA 235
Query: 289 PPHGLCLVEVKYNEEHLRLPAACPLSS 315
P GL LV + Y A+ PL S
Sbjct: 236 PAKGLFLVRIDY--------ASNPLKS 254
>gi|110803601|ref|YP_698382.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101]
gi|110684102|gb|ABG87472.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101]
Length = 248
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 149/253 (58%), Gaps = 13/253 (5%)
Query: 52 RLVIAYDGTRYAGWQFQ----TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHA 107
++ + YDG++Y GWQ Q ++ T+Q +EK L TK+ E+++L+G RTD+GVHA
Sbjct: 5 KITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVL---TKMTSEEIQLIGCGRTDSGVHA 61
Query: 108 WGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
VA+F T S LE I +N LP DIRV+EI A FHARF+ KSK Y Y I N
Sbjct: 62 KNYVANFKTN-SLMTLEQIIKYINEYLPEDIRVKEIREASERFHARFNVKSKTYEYTIDN 120
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
+ D F R YA+H KL+ M + A+Y +G HDF +F +++ ++ + ++++ +
Sbjct: 121 NKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNK--STLRTINSIE 178
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E +L +++ G+GFL VR +V L+ +G I P + IL ++R AK +
Sbjct: 179 FHENNNILSIKINGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKER---AKASEK 235
Query: 288 APPHGLCLVEVKY 300
AP HGLCL+E+ Y
Sbjct: 236 APAHGLCLLELNY 248
>gi|297620615|ref|YP_003708752.1| tRNA pseudouridine synthase A [Waddlia chondrophila WSU 86-1044]
gi|297375916|gb|ADI37746.1| tRNA pseudouridine synthase A [Waddlia chondrophila WSU 86-1044]
Length = 254
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/252 (39%), Positives = 153/252 (60%), Gaps = 8/252 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
K++L+IAYDGT+Y+GWQ Q + +IQ ++E+ L +TK L GA RTD GVHA G
Sbjct: 3 KYKLIIAYDGTQYSGWQMQPNALSIQEVLEEKLKVLTKTRTS---LTGAGRTDAGVHAIG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVAHF ++ + +LNGLLP DIR+ ++ +FHAR+SA +KIY+Y +
Sbjct: 60 QVAHFKVEAPFNP-SLLRLSLNGLLPKDIRIMDVEEVPLDFHARYSATNKIYYYHLNLGP 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVN-VQRNDRLLNPVKSVFRFDV 228
V DPF++ Y+++ LN L+++ Y +G H+FSAF N + NP++++ R V
Sbjct: 119 VQDPFEKQYSWNITNSLNMELLKKGISYLIGTHNFSAFANEANQGAAKKNPIRTLKRISV 178
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ ++LE EG FLY+ VRNM L+ + K + P+ + KIL ++DR+ + +A
Sbjct: 179 VPERIGMRLEFEGESFLYKMVRNMTGTLIDVAKGKLSPEEIKKILESKDRRNAGR---AA 235
Query: 289 PPHGLCLVEVKY 300
P GL LV + Y
Sbjct: 236 PAKGLFLVRIDY 247
>gi|110800554|ref|YP_695694.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124]
gi|110675201|gb|ABG84188.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124]
Length = 248
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 149/253 (58%), Gaps = 13/253 (5%)
Query: 52 RLVIAYDGTRYAGWQFQ----TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHA 107
++ + YDG++Y GWQ Q ++ T+Q +EK L TK+ E+++L+G RTD+GVHA
Sbjct: 5 KITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVL---TKMTSEEIQLIGCGRTDSGVHA 61
Query: 108 WGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
VA+F T S LE I +N LP DIRV+EI A FHARF+ KSK Y Y I N
Sbjct: 62 KNYVANFKTN-SLMTLEQIIEYINEYLPEDIRVKEIREASERFHARFNVKSKTYEYTIDN 120
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
+ D F R YA+H KL+ M + A+Y +G HDF +F +++ ++ + ++++ +
Sbjct: 121 NKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNK--STLRTINSIE 178
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E +L +++ G+GFL VR +V L+ +G I P + IL ++R AK +
Sbjct: 179 FHENNNILSIKINGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKER---AKASEK 235
Query: 288 APPHGLCLVEVKY 300
AP HGLCL+E+ Y
Sbjct: 236 APAHGLCLLELNY 248
>gi|260893342|ref|YP_003239439.1| tRNA pseudouridine synthase A [Ammonifex degensii KC4]
gi|260865483|gb|ACX52589.1| tRNA pseudouridine synthase A [Ammonifex degensii KC4]
Length = 259
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/251 (42%), Positives = 145/251 (57%), Gaps = 9/251 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L +AYDGT ++G+Q Q T+Q ++E+AL R+TK E ++ GA RTD GVHA GQV
Sbjct: 8 LKVAYDGTAFSGFQRQPGLRTVQGVLEEALARLTK---ETCQVKGAGRTDAGVHAEGQVV 64
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
F T S + ALNGLLPPD+ V + +FH R+ A SK+Y Y + AV
Sbjct: 65 SFRTASSIP-TPRLVPALNGLLPPDVAVLAAAEVPEQFHPRYDAVSKVYRYTFFRRAVRC 123
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P R YA H L+ MR+AA Y G+HDF AF N R + + V++VF + E G
Sbjct: 124 PLTRFYALHVPEPLDVERMREAAAYLGGRHDFRAFQNTGRPVK--SSVRTVFSCRLEEAG 181
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
L +E GFLY+ VR + LL+IG+ + P + ILA ++ E +APPHG
Sbjct: 182 PFLYFWIEADGFLYQMVRVIAGTLLEIGRGKLEPSV---ILAALEKGERQLLGPTAPPHG 238
Query: 293 LCLVEVKYNEE 303
LCLV+VKY ++
Sbjct: 239 LCLVQVKYPQD 249
>gi|291549528|emb|CBL25790.1| pseudouridylate synthase I [Ruminococcus torques L2-14]
Length = 256
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 149/258 (57%), Gaps = 9/258 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ RL +AYDGT Y GWQ Q PTI+ + +A+ R+TK E++ ++GASRTD GVHA G
Sbjct: 3 RIRLRVAYDGTAYCGWQVQPEVPTIEGELNQAISRLTK---EEIIVIGASRTDAGVHAKG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
VA F T + + ALN LLP DI V ++H R K Y YKI N
Sbjct: 60 NVAVFDTESTIPA-DRFAYALNPLLPEDIVVVASDEVEADWHPRHCDTEKTYEYKILNSK 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
DP +R YH + LN MR+AAEY G+HDF +F NV + ++ + V++++ +V
Sbjct: 119 FPDPMRRRDTYHVSFDLNLEKMREAAEYLKGEHDFKSFCNV--HTQVEDTVRTIYDLEVE 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ L+ + V G+GFLY VR + L+ +G+ AI P+ +P IL +DR+ ++ P
Sbjct: 177 KEEELITIRVRGNGFLYNMVRILAGTLIGVGRGAIAPEQIPAILEAKDRQ---AAGMTVP 233
Query: 290 PHGLCLVEVKYNEEHLRL 307
P GL LV++ Y +E ++
Sbjct: 234 PQGLTLVKIDYLDEKKQI 251
>gi|159469598|ref|XP_001692950.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii]
gi|158277752|gb|EDP03519.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii]
Length = 239
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/237 (40%), Positives = 135/237 (56%), Gaps = 8/237 (3%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+RL++AYDGT Y GWQ Q + PT+Q +E AL V + +R L + A RTD+GVHA
Sbjct: 3 LSYRLILAYDGTDYCGWQLQPAAPTVQAKLEAALGTVLREDRGVLGVRAAGRTDSGVHAR 62
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV +T ++ + LN +LPPDIRV + P+F S K YHY I N
Sbjct: 63 GQVRTGLTGRGGLPVDKLAYKLNAVLPPDIRVMGVRRTAPDFSVTCSPIGKTYHYNITNS 122
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRND---RLLNPVKSVFR 225
DP + YAYH L+ MR AA VG HDF+ F N+ R NPVK++ R
Sbjct: 123 EAHDPLRHRYAYHVRKPLDLAGMRAAAALLVGTHDFTQFSNIGEEGGRPRKRNPVKTLRR 182
Query: 226 FDVIEMG-----ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQD 277
DV+E+ +++EVEG+GFLY+ VR++ +L+ +G+ +PP IV ++L D
Sbjct: 183 MDVVELDPAAFPGGVRIEVEGNGFLYKMVRHISGVLVAVGERKLPPGIVSEMLEVGD 239
>gi|308814270|ref|XP_003084440.1| TRUA1_PARUW tRNA pseudouridine synthase A 1 (ISS) [Ostreococcus
tauri]
gi|116056325|emb|CAL56708.1| TRUA1_PARUW tRNA pseudouridine synthase A 1 (ISS) [Ostreococcus
tauri]
Length = 705
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/258 (40%), Positives = 143/258 (55%), Gaps = 13/258 (5%)
Query: 53 LVIAYDGTRYAGWQFQTSP-PTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ I+YDGT Y G+Q Q + ++Q +E+ L R+T R+ LRL G+ RTD GVHA GQV
Sbjct: 19 MTISYDGTNYKGFQRQGADVASVQRELERCLTRLTGEGRDALRLGGSGRTDGGVHARGQV 78
Query: 112 AHFITPFSYDGLESIH---AALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
HF + + E A+NG+LP D+R P FHARF A K Y Y +
Sbjct: 79 VHFYSEKDWRSAEDFARCVKAMNGMLPRDVRCERFWRPHPAFHARFHATRKTYAYYVDAR 138
Query: 169 AVMDPFQRHYAYHSVYK-LNTTLMRQAAEYFVGKHDFSAFVNVQRN----DRLLNPVKSV 223
+ D F R YA ++ + +R+A +YFVG DF AF N R+ D LN +++
Sbjct: 139 SPHDVFARAYACQCGWRACDVDALRRACQYFVGTRDFRAFANTSRDKPTSDEDLNTTRTI 198
Query: 224 FRFDVIEMG-ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELA 282
FRFDV E L++LE EG GFLYRQVRNMV L + P+ + +LA+ DR+ +
Sbjct: 199 FRFDVFEQADGLIRLECEGDGFLYRQVRNMVGAALVVASGREKPEWILDLLASGDRRRV- 257
Query: 283 KYALSAPPHGLCLVEVKY 300
+AP GL L V+Y
Sbjct: 258 --PTAAPARGLFLQSVEY 273
>gi|168213913|ref|ZP_02639538.1| tRNA pseudouridine synthase A [Clostridium perfringens CPE str.
F4969]
gi|170714597|gb|EDT26779.1| tRNA pseudouridine synthase A [Clostridium perfringens CPE str.
F4969]
Length = 248
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 148/253 (58%), Gaps = 13/253 (5%)
Query: 52 RLVIAYDGTRYAGWQFQ----TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHA 107
++ + YDG++Y GWQ Q ++ T+Q +EK L TK+ E+++L+G RTD+GVHA
Sbjct: 5 KITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVL---TKMTSEEIQLIGCGRTDSGVHA 61
Query: 108 WGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
VA+F T S LE I +N LP DIRV EI A FHARF+ KSK Y Y I N
Sbjct: 62 KNYVANFKTN-SLMTLEQIIEYINEYLPEDIRVTEIREASERFHARFNVKSKTYEYTIDN 120
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
+ D F R YA+H KL+ M + A+Y +G HDF +F +++ ++ + ++++ +
Sbjct: 121 NKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNK--STLRTINSIE 178
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E +L +++ G+GFL VR +V L+ +G I P + IL ++R AK +
Sbjct: 179 FHENNNILSIKINGNGFLLNMVRIIVGTLVNVGLGKIEPKYINDILEAKER---AKASEK 235
Query: 288 APPHGLCLVEVKY 300
AP HGLCL+E+ Y
Sbjct: 236 APAHGLCLLELNY 248
>gi|302388745|ref|YP_003824566.1| tRNA pseudouridine synthase A [Thermosediminibacter oceani DSM
16646]
gi|302199373|gb|ADL06943.1| tRNA pseudouridine synthase A [Thermosediminibacter oceani DSM
16646]
Length = 243
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 148/249 (59%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
++++ YDGT Y GWQ Q + ++Q ++EKA+ +T E + ++GA RTD GVHA GQV
Sbjct: 4 KILLEYDGTNYHGWQKQNNALSVQEVLEKAIYALTG---ERVSIIGAGRTDAGVHARGQV 60
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F T +E + A+N LP DI V+ A +FHAR+SAK+K+Y Y IYN
Sbjct: 61 ANFRTNTRIP-VERLPYAINSKLPEDIAVKGAEAVPDDFHARYSAKAKVYTYSIYNAPFP 119
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P R Y+Y L+ MR+AA+ F+G HDF+AF + V+++ R DV +
Sbjct: 120 SPLLRRYSYFFPLPLDVEAMRRAAKAFIGVHDFAAF--RASGSSVKTSVRNITRLDVKKC 177
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G LL +EVE GFLY VR + LL++G P+ +P I+ ++DR+ + ++ P H
Sbjct: 178 GKLLTIEVEADGFLYNMVRIIAGTLLEVGTGKKDPEEIPSIIESRDRE---RAGVTLPAH 234
Query: 292 GLCLVEVKY 300
GLCL +V Y
Sbjct: 235 GLCLEKVIY 243
>gi|168211805|ref|ZP_02637430.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC
3626]
gi|170710235|gb|EDT22417.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC
3626]
Length = 248
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 148/253 (58%), Gaps = 13/253 (5%)
Query: 52 RLVIAYDGTRYAGWQFQ----TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHA 107
++ + YDG++Y GWQ Q ++ T+Q +EK L TK+ E+++L+G RTD+GVHA
Sbjct: 5 KITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVL---TKMTSEEIQLIGCGRTDSGVHA 61
Query: 108 WGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
VA+F T S LE I +N LP DIRV EI A FHARF+ KSK Y Y I N
Sbjct: 62 KNYVANFKTN-SLMTLEQIIEYINEYLPEDIRVTEIREASERFHARFNVKSKTYEYTIDN 120
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
+ D F R YA+H KL+ M + A+Y +G HDF +F +++ ++ + ++++ +
Sbjct: 121 NKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNK--STLRTINSIE 178
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E +L +++ G+GFL VR +V L+ +G I P + IL ++R AK +
Sbjct: 179 FHENNNILSIKINGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKER---AKASEK 235
Query: 288 APPHGLCLVEVKY 300
AP HGLCL+E+ Y
Sbjct: 236 APSHGLCLLELNY 248
>gi|223935594|ref|ZP_03627510.1| tRNA pseudouridine synthase A [bacterium Ellin514]
gi|223895602|gb|EEF62047.1| tRNA pseudouridine synthase A [bacterium Ellin514]
Length = 270
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/257 (40%), Positives = 146/257 (56%), Gaps = 9/257 (3%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
K++L IAYDG Y+GWQ Q S +Q VE+AL TKL R+ +SRTDTGVHA
Sbjct: 4 LKFKLTIAYDGKNYSGWQVQKSGIGVQQRVEEAL---TKLFPSVGRIHSSSRTDTGVHAI 60
Query: 109 GQVAHFITPFSYDGL--ESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIY 166
G VAH P + + E + A+N LP DIRV +FHARF A K Y Y ++
Sbjct: 61 GMVAHMEIPKAEFRMTSEKLALAINAHLPEDIRVMSAQKVAADFHARFDAAGKQYRYFVW 120
Query: 167 NDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRF 226
N M+P R A+ +L+ MR AA+ F GKHDF +F RN + + V+++ R
Sbjct: 121 NQTAMNPLLREQAWQVPKELDLKAMRSAAKLFPGKHDFRSFA-ASRNYEVESTVRTLARC 179
Query: 227 DVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
D+ + G+LL +EG GFLY+ R +V L+Q+G+ I + KIL T+DR+ +
Sbjct: 180 DIKKSGSLLTFIIEGDGFLYKMCRGIVGTLVQVGQGKIAAADIKKILETRDRRVA---GM 236
Query: 287 SAPPHGLCLVEVKYNEE 303
+AP HGL L +V Y +
Sbjct: 237 TAPAHGLVLWKVFYKSK 253
>gi|168208061|ref|ZP_02634066.1| tRNA pseudouridine synthase A [Clostridium perfringens E str.
JGS1987]
gi|168215906|ref|ZP_02641531.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239]
gi|169341141|ref|ZP_02863234.1| tRNA pseudouridine synthase A [Clostridium perfringens C str.
JGS1495]
gi|422345695|ref|ZP_16426609.1| tRNA pseudouridine synthase A 1 [Clostridium perfringens WAL-14572]
gi|422873893|ref|ZP_16920378.1| tRNA pseudouridine synthase A [Clostridium perfringens F262]
gi|169299748|gb|EDS81800.1| tRNA pseudouridine synthase A [Clostridium perfringens C str.
JGS1495]
gi|170660642|gb|EDT13325.1| tRNA pseudouridine synthase A [Clostridium perfringens E str.
JGS1987]
gi|182381869|gb|EDT79348.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239]
gi|373227360|gb|EHP49674.1| tRNA pseudouridine synthase A 1 [Clostridium perfringens WAL-14572]
gi|380305126|gb|EIA17407.1| tRNA pseudouridine synthase A [Clostridium perfringens F262]
Length = 248
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 148/253 (58%), Gaps = 13/253 (5%)
Query: 52 RLVIAYDGTRYAGWQFQ----TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHA 107
++ + YDG++Y GWQ Q ++ T+Q +EK L TK+ E+++L+G RTD+GVHA
Sbjct: 5 KITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVL---TKMTSEEIQLIGCGRTDSGVHA 61
Query: 108 WGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
VA+F T S LE I +N LP DIRV EI A FHARF+ KSK Y Y I N
Sbjct: 62 KNYVANFKTN-SLMTLEQIIEYINEYLPEDIRVTEIREASERFHARFNVKSKTYEYTIDN 120
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
+ D F R YA+H KL+ M + A+Y +G HDF +F +++ ++ + ++++ +
Sbjct: 121 NKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNK--STLRTINSIE 178
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E +L +++ G+GFL VR +V L+ +G I P + IL ++R AK +
Sbjct: 179 FHENNNILSIKINGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKER---AKASEK 235
Query: 288 APPHGLCLVEVKY 300
AP HGLCL+E+ Y
Sbjct: 236 APAHGLCLLELNY 248
>gi|421875306|ref|ZP_16306900.1| tRNA pseudouridine synthase A [Brevibacillus laterosporus GI-9]
gi|372455774|emb|CCF16449.1| tRNA pseudouridine synthase A [Brevibacillus laterosporus GI-9]
Length = 250
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 103/249 (41%), Positives = 146/249 (58%), Gaps = 9/249 (3%)
Query: 54 VIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAH 113
++AYDGT Y+G+Q Q TIQ +E A++R+T E +++ G+ RTD GVHA GQ H
Sbjct: 11 IVAYDGTDYSGFQVQPEQVTIQGKIEAAIMRITG---ETIQIHGSGRTDAGVHAKGQTFH 67
Query: 114 FITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDP 173
F T S +E LN LP I ++ I P FHARF + K Y Y I N V D
Sbjct: 68 FDTK-STIPIEKWCWILNNQLPDSIVIQTIEEVEPSFHARFDVREKEYRYCINNTQVPDI 126
Query: 174 FQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGA 233
F+ YA+H Y L+ MRQAA + +G HDF++F + + + + N V++++ + + G
Sbjct: 127 FRHRYAWHVRYPLDVEAMRQAATHLIGTHDFTSFCSARTH--VENKVRTIYDVKIEQEGT 184
Query: 234 LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGL 293
LL + G+GFLY VR + LL +G+ + PD +P+ILA DR ELA +APPHGL
Sbjct: 185 LLWIICRGNGFLYNMVRIIAGTLLNVGEGKLSPDHIPRILAGCDR-ELA--GQTAPPHGL 241
Query: 294 CLVEVKYNE 302
+ EV Y E
Sbjct: 242 TMWEVFYKE 250
>gi|182625331|ref|ZP_02953105.1| tRNA pseudouridine synthase A [Clostridium perfringens D str.
JGS1721]
gi|177909489|gb|EDT71936.1| tRNA pseudouridine synthase A [Clostridium perfringens D str.
JGS1721]
Length = 248
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 148/253 (58%), Gaps = 13/253 (5%)
Query: 52 RLVIAYDGTRYAGWQFQ----TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHA 107
++ + YDG++Y GWQ Q ++ T+Q +EK L TK+ E+++L+G RTD+GVHA
Sbjct: 5 KITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVL---TKMTSEEIQLIGCGRTDSGVHA 61
Query: 108 WGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
VA+F T S LE I +N LP DIR+ EI A FHARF+ KSK Y Y I N
Sbjct: 62 KNYVANFKTN-SLMTLEQIIEYINEYLPEDIRITEIREASERFHARFNVKSKTYEYTIDN 120
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
+ D F R YA+H KL+ M + A+Y +G HDF +F +++ ++ + ++++ +
Sbjct: 121 NKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNK--STLRTINSIE 178
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E +L +++ G+GFL VR +V L+ +G I P + IL ++R AK +
Sbjct: 179 FHENNNILSIKINGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKER---AKASEK 235
Query: 288 APPHGLCLVEVKY 300
AP HGLCL+E+ Y
Sbjct: 236 APAHGLCLLELNY 248
>gi|418034822|ref|ZP_12673291.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|351468476|gb|EHA28696.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. subtilis
str. SC-8]
Length = 247
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 146/253 (57%), Gaps = 7/253 (2%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+ + I+YDG + G+Q Q T+Q +EKAL + K ++ + +V + RTD+GVHA
Sbjct: 1 MRLKCTISYDGHLFNGYQVQPGKRTVQDELEKALAVLHK-SKDRIPVVSSGRTDSGVHAA 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF TP S E ALN LLP DI V++ A FHARFSA K Y Y +Y +
Sbjct: 60 GQVIHFDTPLSIPA-ERWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTE 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
D F+RHYAYH Y+LN MR+AA++ +G HDF++F + + + V++++ D
Sbjct: 119 KHPDVFKRHYAYHFSYRLNVQDMREAAKHLIGTHDFTSFCAAKTE--VQDKVRTIYELDW 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E LQ+ + GSGFLY VR + LL +G I PD V +L +DR+ + +A
Sbjct: 177 TETADGLQMRITGSGFLYNMVRIIAGTLLDVGIGKISPDEVKSMLEAKDREAAGR---TA 233
Query: 289 PPHGLCLVEVKYN 301
P HGL L V Y+
Sbjct: 234 PGHGLYLWNVYYD 246
>gi|325662523|ref|ZP_08151126.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 4_1_37FAA]
gi|325471219|gb|EGC74444.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 4_1_37FAA]
Length = 249
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 101/251 (40%), Positives = 147/251 (58%), Gaps = 9/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ +L IAYDGT Y GWQ Q + T++ ++ KAL KL ED+ ++GASRTD+GVHA G
Sbjct: 5 RIKLTIAYDGTNYCGWQVQPNGITVEEVINKAL---CKLTGEDIAVIGASRTDSGVHALG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
VA F + S E I ALN LP DI + + P+FH R+ K Y Y I N
Sbjct: 62 NVAVFDSATSIPP-ERIAMALNQRLPDDIVIVKSEEVAPDFHPRYCDCEKTYEYHIINTR 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
P +R Y Y L+ M+QAA+Y VG+HDF +F NV+ ++ + V++V +V+
Sbjct: 121 TPIPTKRLTNYFVSYDLDVERMQQAADYLVGEHDFVSFCNVR--TQVEDTVRTVTELEVL 178
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
G + + + G+GFLY VR +V L+++G+ P+ V +IL +DRK ++AP
Sbjct: 179 REGEEITIRISGNGFLYNMVRIIVGTLVRVGRGFYTPEKVKEILEAKDRK---AAGVTAP 235
Query: 290 PHGLCLVEVKY 300
HGL LVE++Y
Sbjct: 236 AHGLMLVEIRY 246
>gi|339006512|ref|ZP_08639087.1| tRNA pseudouridine synthase A [Brevibacillus laterosporus LMG
15441]
gi|338775721|gb|EGP35249.1| tRNA pseudouridine synthase A [Brevibacillus laterosporus LMG
15441]
Length = 246
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 103/249 (41%), Positives = 146/249 (58%), Gaps = 9/249 (3%)
Query: 54 VIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAH 113
++AYDGT Y+G+Q Q TIQ +E A++R+T E +++ G+ RTD GVHA GQ H
Sbjct: 7 IVAYDGTDYSGFQVQPEQVTIQGEIEAAIMRITG---ETIQIHGSGRTDAGVHAKGQTFH 63
Query: 114 FITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDP 173
F T S +E LN LP I ++ I P FHARF + K Y Y I N V D
Sbjct: 64 FDTK-STIPIEKWCWILNNQLPNSIVIQTIEEVEPSFHARFDVREKEYRYCINNTQVPDI 122
Query: 174 FQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGA 233
F+ YA+H Y L+ MRQAA + +G HDF++F + + + + N V++++ + + G
Sbjct: 123 FRHRYAWHVRYPLDVEAMRQAATHLIGTHDFTSFCSARTH--VENKVRTIYDVKIEQEGT 180
Query: 234 LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGL 293
LL + G+GFLY VR + LL +G+ + PD +P+ILA DR ELA +APPHGL
Sbjct: 181 LLWIICRGNGFLYNMVRIIAGTLLNVGEGKLSPDHIPRILAGCDR-ELA--GQTAPPHGL 237
Query: 294 CLVEVKYNE 302
+ EV Y E
Sbjct: 238 TMWEVFYKE 246
>gi|452994850|emb|CCQ93516.1| tRNA pseudouridine synthase A [Clostridium ultunense Esp]
Length = 244
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 149/249 (59%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L I YDGT Y GWQ Q + +IQ +E+A+ +T E + L+G+ RTD+GVHA GQV
Sbjct: 5 KLTIQYDGTSYCGWQKQKNGNSIQEEIERAIKLITG---ERVNLIGSGRTDSGVHAKGQV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F+T S ++ ALN LP DI + + +FH+RF A K Y Y IYN +
Sbjct: 62 ANFLTD-SNIPVDRFKFALNSKLPRDISIIDSRRVDEKFHSRFDAIRKRYQYIIYNKKIR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
+P R++AYH Y LN M +A +YF+G HDFS+F + N + +++++ F +
Sbjct: 121 NPLYRNFAYHVPYFLNYKEMEEATKYFLGSHDFSSF--MASNSNVKTTIRTIYTFTIKRT 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G L+ +EG+GFLY VR ++ L++IG + D +P I+ +++R E A Y +APP
Sbjct: 179 GDLIIFSIEGNGFLYNMVRIIIGTLVEIGSGKLKSDSIPYIIHSKNR-EAAGY--TAPPE 235
Query: 292 GLCLVEVKY 300
GL L +V Y
Sbjct: 236 GLYLEKVFY 244
>gi|334338934|ref|YP_004543914.1| tRNA pseudouridine synthase A [Desulfotomaculum ruminis DSM 2154]
gi|334090288|gb|AEG58628.1| tRNA pseudouridine synthase A [Desulfotomaculum ruminis DSM 2154]
Length = 251
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 100/253 (39%), Positives = 154/253 (60%), Gaps = 10/253 (3%)
Query: 52 RLVIAYDGTRYAGWQFQ--TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+L +AYDGT Y G+Q Q T PT+Q +E L ++L ++ ++++GA RTD GVHA G
Sbjct: 7 KLTVAYDGTHYHGFQEQRGTGLPTVQEALEAVL---SQLAQKPVQVIGAGRTDAGVHALG 63
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV +F +E A+N LLP DI V + +FHARFSA +K Y Y IY+
Sbjct: 64 QVVNFRCDPWRIPVERTPLAMNPLLPADISVLKAEPVPQDFHARFSAIAKTYRYSIYHHR 123
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+M P QR Y +H +L+T M+QAA+Y +G HDF +F + + + V++++R +V+
Sbjct: 124 IMSPLQRLYCHHEPRRLDTGAMKQAAQYLLGTHDFKSF--QAQGTPVRDTVRTIYRAEVV 181
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E G L+ + V G+GFLY VR + LL+ G I P+ + I+A+++R ++ P
Sbjct: 182 EEGPLIHIYVRGNGFLYNMVRIIAGTLLKAGLGKIKPEEMEHIIASKNR---VLAGVTVP 238
Query: 290 PHGLCLVEVKYNE 302
P GLCL+EV+Y++
Sbjct: 239 PRGLCLMEVEYSK 251
>gi|125975420|ref|YP_001039330.1| tRNA pseudouridine synthase A [Clostridium thermocellum ATCC 27405]
gi|256005284|ref|ZP_05430250.1| tRNA pseudouridine synthase A [Clostridium thermocellum DSM 2360]
gi|281419381|ref|ZP_06250396.1| tRNA pseudouridine synthase A [Clostridium thermocellum JW20]
gi|385777865|ref|YP_005687030.1| tRNA pseudouridine synthase A [Clostridium thermocellum DSM 1313]
gi|419723270|ref|ZP_14250403.1| tRNA pseudouridine synthase A [Clostridium thermocellum AD2]
gi|419727085|ref|ZP_14254091.1| tRNA pseudouridine synthase A [Clostridium thermocellum YS]
gi|166991160|sp|A3DJK8.1|TRUA_CLOTH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|125715645|gb|ABN54137.1| tRNA pseudouridine synthase A [Clostridium thermocellum ATCC 27405]
gi|255990720|gb|EEU00836.1| tRNA pseudouridine synthase A [Clostridium thermocellum DSM 2360]
gi|281407001|gb|EFB37264.1| tRNA pseudouridine synthase A [Clostridium thermocellum JW20]
gi|316939545|gb|ADU73579.1| tRNA pseudouridine synthase A [Clostridium thermocellum DSM 1313]
gi|380769490|gb|EIC03404.1| tRNA pseudouridine synthase A [Clostridium thermocellum YS]
gi|380780735|gb|EIC10400.1| tRNA pseudouridine synthase A [Clostridium thermocellum AD2]
Length = 244
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 144/249 (57%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+I YDGT Y GWQ Q + T+Q +E+A + L E + L+GASRTD GVHA GQV
Sbjct: 5 KLIIEYDGTNYHGWQKQKNAKTVQDTIERA---IKGLTGEKVDLIGASRTDFGVHALGQV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+FIT G + ALN +LP DI ++E +FHAR+ AK K Y Y IYN
Sbjct: 62 ANFITNSGIPG-DRFSYALNRMLPDDIVIKESQEVDMDFHARYKAKGKRYRYLIYNSQFP 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
RH YH +KL+ M++AA YF+G HDFSAF + + + V+++ +
Sbjct: 121 SALLRHRTYHVSHKLDFESMQRAASYFLGTHDFSAFRSSGSSAK--TSVRTITDVSLERE 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
+++ E+ G GFLY VR +V L+++G I D +P+I+ ++ RK + +AP
Sbjct: 179 DKIVKFEIAGDGFLYNMVRIIVGTLMEVGIGKIRADEIPQIIESRKRKRAGR---TAPAE 235
Query: 292 GLCLVEVKY 300
GL LVEV Y
Sbjct: 236 GLYLVEVYY 244
>gi|449092858|ref|YP_007425349.1| tRNA pseudouridine synthase A [Bacillus subtilis XF-1]
gi|449026773|gb|AGE62012.1| tRNA pseudouridine synthase A [Bacillus subtilis XF-1]
Length = 247
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 145/253 (57%), Gaps = 7/253 (2%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+ + I+YDG + G+Q Q T+Q +EKAL + K ++ + +V + RTD+GVHA
Sbjct: 1 MRLKCTISYDGHLFNGYQVQPGKRTVQDELEKALAVLHK-SKDRIPVVSSGRTDSGVHAA 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF TP S HA LN LLP DI V++ A FHARFSA K Y Y +Y +
Sbjct: 60 GQVIHFDTPLSIPAERWPHA-LNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTE 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
D F+RHYAYH Y+LN MR+AA++ +G HDF++F + + + V++++ D
Sbjct: 119 KHPDVFKRHYAYHFSYRLNVQDMREAAKHLIGTHDFTSFCAAKTE--VQDKVRTIYELDW 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E LQ+ + GSGFLY VR + LL G I PD V +L +DR+ + +A
Sbjct: 177 TETADGLQMRITGSGFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAGR---TA 233
Query: 289 PPHGLCLVEVKYN 301
P HGL L V Y+
Sbjct: 234 PGHGLYLWNVYYD 246
>gi|210618029|ref|ZP_03291864.1| hypothetical protein CLONEX_04097 [Clostridium nexile DSM 1787]
gi|210149022|gb|EEA80031.1| hypothetical protein CLONEX_04097 [Clostridium nexile DSM 1787]
Length = 245
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 100/251 (39%), Positives = 149/251 (59%), Gaps = 9/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ +L IAYDGT Y GWQ Q + T++ +V KAL KL ED++++GASRTD+GVHA G
Sbjct: 3 RIKLTIAYDGTNYCGWQVQPNGITVEEVVNKAL---KKLTGEDIQVIGASRTDSGVHALG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
VA F T + E I ALN LP DI + + +FH R+ SK Y Y I N
Sbjct: 60 NVAVFDTHTTIPP-ERISYALNQRLPEDIVIVKSEEVAEDFHPRYCDCSKTYEYHILNMR 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ P +R Y Y L+ MR+AA Y +G+HDF +F NV+ + + + V++V +++
Sbjct: 119 IPIPTKRLTNYFVSYDLDVEKMRKAAGYLIGEHDFVSFCNVRTD--VEDTVRTVTELEIL 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G + + + G+GFLY VR +V L+++G+ P+ V +IL +DRK ++AP
Sbjct: 177 KDGEEITIRISGNGFLYNMVRIIVGTLIRVGRGFYEPEKVKEILEAKDRKAA---GVTAP 233
Query: 290 PHGLCLVEVKY 300
PHGL L E++Y
Sbjct: 234 PHGLILAEIRY 244
>gi|121534665|ref|ZP_01666486.1| tRNA pseudouridine synthase A [Thermosinus carboxydivorans Nor1]
gi|121306685|gb|EAX47606.1| tRNA pseudouridine synthase A [Thermosinus carboxydivorans Nor1]
Length = 250
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 146/249 (58%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L +AYDGT Y G+Q Q + T+Q ++E+ R+ + L++ GA+RTD GVHA+GQV
Sbjct: 11 KLTVAYDGTAYHGFQRQANAITVQQVLEE---RLATIFGHPLKVTGAARTDAGVHAYGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
F T + + AA +LPPDI V + +FHARFSA+SKIY Y+IYN AV
Sbjct: 68 VGFATSGTIPAANIVRAA-KSVLPPDIVVVKAEEVSADFHARFSARSKIYLYRIYNAAVA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
DPF+R+YA+H L+ M A + VG HDFSAF ++PV++++
Sbjct: 127 DPFRRNYAWHVTQPLDEAAMDTAVQTVVGTHDFSAFRAA--GGPPVSPVRTIYEAGCTRE 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G +L+ G+GFLY VRN+V L+ +G + D +ILA +DR + ++APP
Sbjct: 185 GDMLEFRFWGNGFLYHMVRNLVGTLVDVGLGRLTRDGFTRILAGRDRT---RAGITAPPQ 241
Query: 292 GLCLVEVKY 300
GL L E+ Y
Sbjct: 242 GLYLKEIFY 250
>gi|384173806|ref|YP_005555191.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|349593030|gb|AEP89217.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
Length = 247
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 145/253 (57%), Gaps = 7/253 (2%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+ + I+YDG + G+Q Q T+Q +EKAL + K ++ + +V + RTD+GVHA
Sbjct: 1 MRLKCTISYDGHLFNGYQVQPGKRTVQDELEKALAVLHK-SKDRIPVVSSGRTDSGVHAA 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF TP S E ALN LLP DI V++ A FHARFSA K Y Y +Y +
Sbjct: 60 GQVIHFDTPLSIPA-ERWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTE 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
D F+RHYAYH Y+LN MR+AA++ +G HDF++F + + + V++++ D
Sbjct: 119 KHPDVFKRHYAYHFSYRLNVQDMREAAKHLIGTHDFTSFCAAKTE--VQDKVRTIYELDW 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E LQ+ + GSGFLY VR + LL G I PD V +L +DR+ + +A
Sbjct: 177 TETADGLQMRITGSGFLYNMVRIIAGTLLDAGIGKISPDDVKSMLEAKDREAAGR---TA 233
Query: 289 PPHGLCLVEVKYN 301
P HGL L V Y+
Sbjct: 234 PGHGLYLWNVYYD 246
>gi|221307961|ref|ZP_03589808.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. subtilis
str. 168]
gi|221312282|ref|ZP_03594087.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. subtilis
str. NCIB 3610]
gi|221317216|ref|ZP_03598510.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. subtilis
str. JH642]
gi|221321479|ref|ZP_03602773.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. subtilis
str. SMY]
gi|255767037|ref|NP_388029.2| tRNA pseudouridine synthase A [Bacillus subtilis subsp. subtilis
str. 168]
gi|321313820|ref|YP_004206107.1| tRNA pseudouridine synthase A [Bacillus subtilis BSn5]
gi|402774391|ref|YP_006628335.1| Pseudouridylate synthase I [Bacillus subtilis QB928]
gi|428277563|ref|YP_005559298.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. natto
BEST195]
gi|430755550|ref|YP_007211111.1| tRNA pseudouridine synthase A (tRNA-uridine isomeras I; tRNA
pseudouridylate synthase I) [Bacillus subtilis subsp.
subtilis str. BSP1]
gi|452916565|ref|ZP_21965187.1| tRNA pseudouridine(38-40) synthase [Bacillus subtilis MB73/2]
gi|239938721|sp|P70973.2|TRUA_BACSU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|225184664|emb|CAB11924.2| pseudouridylate synthase I [Bacillus subtilis subsp. subtilis str.
168]
gi|291482520|dbj|BAI83595.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. natto
BEST195]
gi|320020094|gb|ADV95080.1| tRNA pseudouridine synthase A [Bacillus subtilis BSn5]
gi|402483457|gb|AFQ59966.1| Pseudouridylate synthase I [Bacillus subtilis QB928]
gi|407955837|dbj|BAM49077.1| tRNA pseudouridine synthase A [Bacillus subtilis BEST7613]
gi|407963108|dbj|BAM56347.1| tRNA pseudouridine synthase A [Bacillus subtilis BEST7003]
gi|430020070|gb|AGA20676.1| tRNA pseudouridine synthase A (tRNA-uridine isomeras I; tRNA
pseudouridylate synthase I) [Bacillus subtilis subsp.
subtilis str. BSP1]
gi|452114474|gb|EME04874.1| tRNA pseudouridine(38-40) synthase [Bacillus subtilis MB73/2]
Length = 247
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 145/253 (57%), Gaps = 7/253 (2%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+ + I+YDG + G+Q Q T+Q +EKAL + K ++ + +V + RTD+GVHA
Sbjct: 1 MRLKCTISYDGHLFNGYQVQPGKRTVQDELEKALAVLHK-SKDRIPVVSSGRTDSGVHAA 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF TP S E ALN LLP DI V++ A FHARFSA K Y Y +Y +
Sbjct: 60 GQVIHFDTPLSIPA-ERWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTE 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
D F+RHYAYH Y+LN MR+AA++ +G HDF++F + + + V++++ D
Sbjct: 119 KHPDVFKRHYAYHFSYRLNVQDMREAAKHLIGTHDFTSFCAAKTE--VQDKVRTIYELDW 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E LQ+ + GSGFLY VR + LL G I PD V +L +DR+ + +A
Sbjct: 177 TETADGLQMRITGSGFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAGR---TA 233
Query: 289 PPHGLCLVEVKYN 301
P HGL L V Y+
Sbjct: 234 PGHGLYLWNVYYD 246
>gi|310829551|ref|YP_003961908.1| hypothetical protein [Eubacterium limosum KIST612]
gi|308741285|gb|ADO38945.1| hypothetical protein ELI_4001 [Eubacterium limosum KIST612]
Length = 244
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/249 (41%), Positives = 146/249 (58%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+++IAY GTRYAGWQ Q + PT++ + A+ VT E + L G+ RTD GVHA GQ
Sbjct: 5 QMIIAYKGTRYAGWQRQPNAPTVEEALTGAIKAVTG---ETVTLYGSGRTDAGVHALGQS 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
AHF T S E AALN LP DIRV A FH+R+SAK K+Y Y++Y + V+
Sbjct: 62 AHFHTE-SRVPPERFAAALNTRLPGDIRVLSSCEAPEGFHSRYSAKGKVYTYQLYLNPVL 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
PF Y++H Y ++ + M+ A+ F+G+HDF F+ + R V+++ +
Sbjct: 121 SPFYAEYSWHVNYPVDVSRMKAASAAFLGEHDFCGFMAAGSSVR--GTVRTIRAITFEQE 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
GALL++ G+GFLY VR M L +IG I + +P I+A+ DRK+ ++APP
Sbjct: 179 GALLRITYTGNGFLYNMVRIMTGTLAEIGMGRIKAEALPGIIASCDRKQA---GMTAPPQ 235
Query: 292 GLCLVEVKY 300
GL L EV Y
Sbjct: 236 GLFLREVLY 244
>gi|386756729|ref|YP_006229945.1| tRNA pseudouridine synthase A [Bacillus sp. JS]
gi|384930011|gb|AFI26689.1| tRNA pseudouridine synthase A [Bacillus sp. JS]
Length = 247
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 145/253 (57%), Gaps = 7/253 (2%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+ + I+YDG + G+Q Q T+Q +EKAL + K +E + +V + RTD+GVHA
Sbjct: 1 MRLKCTISYDGHLFNGYQVQPGKRTVQDELEKALAVLHK-SKERIPVVSSGRTDSGVHAA 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF TP + E ALN LLP DI V++ FHARFSA K Y Y +Y +
Sbjct: 60 GQVIHFDTPLAIPA-ERWPYALNALLPDDIAVKQAEITDDGFHARFSAVKKEYRYFVYTE 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
D F+RHYAYH Y+LN MR+AA++ +G HDF++F + + + V++++ D
Sbjct: 119 KHPDVFKRHYAYHFSYRLNVQDMREAAKHLIGTHDFTSFCAAKTE--VQDKVRTIYELDW 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E LQ+ + GSGFLY VR +V LL G I PD V +L +DR+ + +A
Sbjct: 177 TETDDGLQMRITGSGFLYNMVRIIVGTLLDAGIGKISPDDVKSMLEAKDREAAGR---TA 233
Query: 289 PPHGLCLVEVKYN 301
P HGL L V Y+
Sbjct: 234 PGHGLYLWNVYYD 246
>gi|218230830|ref|YP_002364991.1| tRNA pseudouridine synthase A [Bacillus cereus B4264]
gi|228950690|ref|ZP_04112824.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229077443|ref|ZP_04210092.1| tRNA pseudouridine synthase A [Bacillus cereus Rock4-2]
gi|229148551|ref|ZP_04276807.1| tRNA pseudouridine synthase A [Bacillus cereus m1550]
gi|229176742|ref|ZP_04304146.1| tRNA pseudouridine synthase A [Bacillus cereus 172560W]
gi|449086809|ref|YP_007419250.1| TruA [Bacillus thuringiensis serovar kurstaki str. HD73]
gi|218158787|gb|ACK58779.1| tRNA pseudouridine synthase A [Bacillus cereus B4264]
gi|228606785|gb|EEK64202.1| tRNA pseudouridine synthase A [Bacillus cereus 172560W]
gi|228634967|gb|EEK91540.1| tRNA pseudouridine synthase A [Bacillus cereus m1550]
gi|228705869|gb|EEL58206.1| tRNA pseudouridine synthase A [Bacillus cereus Rock4-2]
gi|228809041|gb|EEM55526.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|449020566|gb|AGE75729.1| TruA [Bacillus thuringiensis serovar kurstaki str. HD73]
Length = 252
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 148/250 (59%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q + T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + I+A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLEEWQWINA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 127 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
+ G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 185 NDEIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L EV YN
Sbjct: 242 GLYLWEVNYN 251
>gi|365164116|ref|ZP_09360202.1| tRNA pseudouridine synthase A 1 [Bacillus sp. 7_6_55CFAA_CT2]
gi|423415958|ref|ZP_17393078.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG3O-2]
gi|423422375|ref|ZP_17399406.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG3X2-2]
gi|423428248|ref|ZP_17405252.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG4O-1]
gi|423439403|ref|ZP_17416341.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG4X12-1]
gi|423507832|ref|ZP_17484399.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HD73]
gi|363613417|gb|EHL64934.1| tRNA pseudouridine synthase A 1 [Bacillus sp. 7_6_55CFAA_CT2]
gi|401094405|gb|EJQ02486.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG3O-2]
gi|401112757|gb|EJQ20631.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG4X12-1]
gi|401120092|gb|EJQ27893.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG3X2-2]
gi|401127170|gb|EJQ34899.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG4O-1]
gi|402442619|gb|EJV74540.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HD73]
Length = 247
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 148/250 (59%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q + T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + I+A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWINA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
+ G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 NDEIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L EV YN
Sbjct: 237 GLYLWEVNYN 246
>gi|311070796|ref|YP_003975719.1| tRNA pseudouridine synthase A [Bacillus atrophaeus 1942]
gi|419823139|ref|ZP_14346699.1| tRNA pseudouridine synthase A [Bacillus atrophaeus C89]
gi|310871313|gb|ADP34788.1| tRNA pseudouridine synthase A [Bacillus atrophaeus 1942]
gi|388472670|gb|EIM09433.1| tRNA pseudouridine synthase A [Bacillus atrophaeus C89]
Length = 247
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/253 (40%), Positives = 144/253 (56%), Gaps = 7/253 (2%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
K + I+YDG + G+Q Q T+Q +EKAL + K E + + ++ + RTD+GVHA
Sbjct: 1 MKMKCTISYDGHLFNGYQVQPGKRTVQAELEKALAILHKSE-DKVPVISSGRTDSGVHAA 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF TP S E ALN LLP DI V+ A FHARFSA K Y Y +Y +
Sbjct: 60 GQVIHFDTPLSIPA-ERWPYALNALLPGDIAVKTAEHADDGFHARFSAIKKEYRYFVYTE 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
D F+RHYAYH Y+LN MR+A+E+ +G HDF++F + N + + V++++ D
Sbjct: 119 KHPDVFKRHYAYHFSYRLNVQKMREASEHLIGTHDFTSFCSA--NTEVRDKVRTIYELDW 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ LQ+ + GSGFLY VR + LL +G D V +L +DR+ + +A
Sbjct: 177 TDTDDGLQMRIVGSGFLYNMVRIIAGTLLDVGTGKFSADDVKGMLDAKDREAAGR---TA 233
Query: 289 PPHGLCLVEVKYN 301
P HGL L V Y+
Sbjct: 234 PGHGLYLWHVYYD 246
>gi|296333145|ref|ZP_06875599.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305672848|ref|YP_003864519.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. spizizenii
str. W23]
gi|296149761|gb|EFG90656.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305411091|gb|ADM36209.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 247
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/253 (41%), Positives = 145/253 (57%), Gaps = 7/253 (2%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+ + I+YDG + G+Q Q T+Q +EKAL + K ++ + +V + RTD+GVHA
Sbjct: 1 MRLKCTISYDGHLFNGYQVQPGKRTVQDELEKALAVLHK-SKDRIPVVSSGRTDSGVHAA 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF TP S E ALN LLP DI V++ A FHARFSA K Y Y +Y +
Sbjct: 60 GQVIHFDTPLSIPA-EKWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTE 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
D F+RHYAYH Y LN MR+AA++ +G HDF++F V+ + + V++++ D
Sbjct: 119 KHPDVFKRHYAYHFSYHLNVQNMREAAKHLLGTHDFTSFCAVKT--EVQDKVRTIYELDW 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E LQ+ + GSGFLY VR + LL G I PD V +L +DR+ + +A
Sbjct: 177 AETDDGLQMRITGSGFLYNMVRIIAGTLLDAGIGKISPDDVKSMLEAKDREAAGR---TA 233
Query: 289 PPHGLCLVEVKYN 301
P HGL L V Y+
Sbjct: 234 PGHGLYLWNVFYD 246
>gi|397905071|ref|ZP_10505943.1| tRNA pseudouridine synthase A [Caloramator australicus RC3]
gi|397161866|emb|CCJ33277.1| tRNA pseudouridine synthase A [Caloramator australicus RC3]
Length = 244
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/250 (40%), Positives = 154/250 (61%), Gaps = 11/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
++VI YDGTRY GWQ Q + +IQ +EKA+ +VT E ++ +SRTD GVHA GQV
Sbjct: 5 KIVIEYDGTRYCGWQRQKNGVSIQETIEKAIEKVTG---EKTEIISSSRTDAGVHAKGQV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVP-EFHARFSAKSKIYHYKIYNDAV 170
A+F+T + E I A+N LP DI + S VP +FH+R+S+K K Y Y I N +
Sbjct: 62 ANFLTSSTVPP-EKICYAINSFLPDDIVILS-SQEVPLDFHSRYSSKGKKYSYTILNRKI 119
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
++Y+ H Y+LN M +A++YF+G+HDFSAF + + V+++ R ++I+
Sbjct: 120 PSALLKNYSAHIPYELNIEDMIRASKYFLGEHDFSAFKST--GSSVKGNVRTIKRLELIK 177
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
++++ +E +GFLY VR + L+++GK I PD +P I+ ++DRK K +AP
Sbjct: 178 DEDIIKMFIEANGFLYNMVRIIAGTLIEVGKGRIKPDDIPFIIDSRDRK---KAGPTAPA 234
Query: 291 HGLCLVEVKY 300
GLCL +V Y
Sbjct: 235 QGLCLEKVYY 244
>gi|423405134|ref|ZP_17382307.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG2X1-2]
gi|423479977|ref|ZP_17456691.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG6X1-1]
gi|401645504|gb|EJS63159.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG2X1-2]
gi|402423961|gb|EJV56157.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG6X1-1]
Length = 247
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 148/250 (59%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L + +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEISSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 GDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 237 GLYLWQVNYN 246
>gi|270285538|ref|ZP_06194932.1| tRNA pseudouridine synthase A [Chlamydia muridarum Nigg]
gi|270289549|ref|ZP_06195851.1| tRNA pseudouridine synthase A [Chlamydia muridarum Weiss]
gi|301336935|ref|ZP_07225137.1| tRNA pseudouridine synthase A [Chlamydia muridarum MopnTet14]
gi|13431951|sp|Q9PJT0.1|TRUA_CHLMU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
Length = 267
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 150/252 (59%), Gaps = 14/252 (5%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L IAY GT Y+GWQ+Q + +IQ ++E L K+ R + ++ + RTD GVHA GQVA
Sbjct: 7 LRIAYQGTAYSGWQYQPNALSIQEVLETLL---QKISRTRISVIASGRTDAGVHAQGQVA 63
Query: 113 HFITP----FSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
HF P FS G I LN LLP DI +R++ A +FH+RFSA +K YHY +
Sbjct: 64 HFCCPDHPHFSDPG--QIKKMLNALLPHDIVIRDVIATNEDFHSRFSAITKEYHYTLSLL 121
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
P R + + +KL MR+AA+Y VG HDF++F N+ R + V++++ D+
Sbjct: 122 PKPLPHHRLFCFSPRHKLCLESMREAAKYLVGTHDFASFANLGRE--YSSTVRTLYALDL 179
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+E L+ + +G+GFLY+ VRN+V LL IGK PP+ + ++L +DRK K SA
Sbjct: 180 LEQEHLVTVICKGNGFLYKMVRNIVGALLDIGKGKYPPEHLLEMLEKKDRK---KGPPSA 236
Query: 289 PPHGLCLVEVKY 300
PP+GL L V Y
Sbjct: 237 PPYGLSLHHVCY 248
>gi|229917326|ref|YP_002885972.1| tRNA pseudouridine synthase A [Exiguobacterium sp. AT1b]
gi|259550390|sp|C4KZL4.1|TRUA_EXISA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|229468755|gb|ACQ70527.1| tRNA pseudouridine synthase A [Exiguobacterium sp. AT1b]
Length = 246
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/255 (39%), Positives = 144/255 (56%), Gaps = 15/255 (5%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ +L++AYDGT YAG+Q Q + TIQ +E L R + R ++++ + RTD VHA G
Sbjct: 3 RIKLIVAYDGTHYAGYQVQPNGNTIQAEIESVLAR---MHRHPVKIIASGRTDARVHALG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF T E ALN +LP DI V++ FHAR+ AK K Y Y I
Sbjct: 60 QVIHFDTTLEMPA-ERFVKALNAMLPDDILVKQAEEMDDTFHARYGAKRKEYRYHIRQTE 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAF--VNVQRNDRLLNPVKSVFRFD 227
DPF+RHYA YKL+ MRQA E +G HDF++F + DR V++++ +
Sbjct: 119 --DPFRRHYAATVTYKLSLEAMRQAMERLIGTHDFTSFSVTKAEVEDR----VRTIYEAE 172
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V+EMG + GSGFLY QVR MV ++++G+ P + ++L +DR+ ++
Sbjct: 173 VLEMGDEIIFRFVGSGFLYNQVRIMVGTVIEVGRGKYQPADITQMLEAKDRRVA---GIT 229
Query: 288 APPHGLCLVEVKYNE 302
APPHGL L V Y +
Sbjct: 230 APPHGLYLWNVNYEK 244
>gi|392408581|ref|YP_006445188.1| pseudouridylate synthase I [Desulfomonile tiedjei DSM 6799]
gi|390621717|gb|AFM22924.1| pseudouridylate synthase I [Desulfomonile tiedjei DSM 6799]
Length = 246
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/253 (40%), Positives = 142/253 (56%), Gaps = 11/253 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
K+R+ + YDGT Y GWQ Q S PT+Q +E AL R+ + +R+ GA RTD GVHA G
Sbjct: 3 KFRITVEYDGTAYHGWQLQKSLPTVQGALEGALSRILTVP---VRVHGAGRTDAGVHATG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVAHF ++ LE++ A N LLPPD+ VR + +A +FHAR SA+SK Y Y I N
Sbjct: 60 QVAHFSADWN-KSLEALQKACNALLPPDVVVRNLVSAPEDFHARHSAQSKTYVYTILNGP 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF--RFD 227
+ RHY +H + L+ M+ AA+ G HDF+AF + + V+ + +
Sbjct: 119 LRCALNRHYTWHIPFSLDVDAMKHAAKLLEGTHDFAAFGSPTEGTP--STVRRILSAHWS 176
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
LQ + G+GFL VR++V L+ +G I P KIL + DR + +
Sbjct: 177 NGNSSDTLQFTIIGTGFLRYMVRSLVGTLVPVGAGKIDPTAFGKILESCDRSQSGP---T 233
Query: 288 APPHGLCLVEVKY 300
APPHGLCL V+Y
Sbjct: 234 APPHGLCLALVEY 246
>gi|331086292|ref|ZP_08335372.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330406058|gb|EGG85581.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 249
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 99/251 (39%), Positives = 147/251 (58%), Gaps = 9/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ +L IAYDGT Y GWQ Q + T++ ++ KAL ++T ED+ ++GASRTD+GVHA G
Sbjct: 5 RIKLTIAYDGTNYCGWQVQPNGITVEEVINKALCKLTG---EDIAVIGASRTDSGVHALG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
VA F + S E I ALN LP DI + + +FH R+ K Y Y I N
Sbjct: 62 NVAVFDSATSIPP-ERIAMALNQRLPDDIVIVKSEEVATDFHPRYCDCEKTYEYHIINTR 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
P +R Y Y L+ M+QAA+Y VG+HDF +F NV+ ++ + V++V +V+
Sbjct: 121 TPIPTKRLTNYFVSYDLDVERMQQAADYLVGEHDFVSFCNVR--TQVEDTVRTVTELEVL 178
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
G + + + G+GFLY VR +V L+++G+ P+ V +IL +DRK ++AP
Sbjct: 179 REGEEITIRISGNGFLYNMVRIIVGTLVRVGRGFYTPEKVKEILEAKDRK---AAGVTAP 235
Query: 290 PHGLCLVEVKY 300
HGL LVE++Y
Sbjct: 236 AHGLMLVEIRY 246
>gi|229159315|ref|ZP_04287339.1| tRNA pseudouridine synthase A [Bacillus cereus R309803]
gi|228624207|gb|EEK81009.1| tRNA pseudouridine synthase A [Bacillus cereus R309803]
Length = 252
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 147/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLEEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 127 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 185 GDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 242 GLYLWQVNYN 251
>gi|374298040|ref|YP_005048231.1| pseudouridylate synthase I [Clostridium clariflavum DSM 19732]
gi|359827534|gb|AEV70307.1| pseudouridylate synthase I [Clostridium clariflavum DSM 19732]
Length = 244
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 100/256 (39%), Positives = 144/256 (56%), Gaps = 23/256 (8%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L I YDGT Y GWQ Q++ T+Q +EKA+ +T E + + G+SRTD GVHA+GQV
Sbjct: 5 KLTIEYDGTNYHGWQAQSNAKTVQGTIEKAIHGLTG---EKIAITGSSRTDQGVHAYGQV 61
Query: 112 AHFITP-------FSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYK 164
A+F T FSY ALN +LP DI +++ +FHAR+ +K K Y Y
Sbjct: 62 ANFFTNSNIPPERFSY--------ALNRMLPDDIVIKKSEEVSMDFHARYCSKGKKYRYL 113
Query: 165 IYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF 224
IYN++ R+ AYH ++L+ M +A E+F G HDFSAF + + V+++F
Sbjct: 114 IYNNSFPSAIYRNRAYHISHRLDLEKMNRAIEFFKGTHDFSAFRATGSSSK--TSVRTIF 171
Query: 225 RFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
+ L+ EV G GFLY VR MV ++ +G I + +P I+ + DR+ +
Sbjct: 172 DVSLTSKEDLICFEVSGDGFLYNMVRIMVGTIVDVGMGRIEAEDIPDIIESLDRRRAGR- 230
Query: 285 ALSAPPHGLCLVEVKY 300
+APP GL LVEV Y
Sbjct: 231 --TAPPQGLYLVEVYY 244
>gi|375360838|ref|YP_005128877.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|371566832|emb|CCF03682.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
Length = 247
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 101/250 (40%), Positives = 141/250 (56%), Gaps = 7/250 (2%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ IAYDG + G+Q Q T+Q +EKAL + K + + ++ + RTD+ VHA GQV
Sbjct: 4 KCTIAYDGHLFNGYQVQPGKRTVQSELEKALAVIHKTDGR-VPVISSGRTDSDVHAAGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S E ALN LLP DI V+ A FHARFSA K Y Y +Y +
Sbjct: 63 IHFDTPLSIPA-EKWPFALNALLPDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTEKHP 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+RHYAYH Y+LN MR+A+ + +GKHDF++F + + + V++++ D E
Sbjct: 122 DVFKRHYAYHFAYQLNVQKMREASRHLIGKHDFTSFCAA--DTAVQDKVRTIYELDWTET 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G LQ+ + G+GFLY VR + LL G PD V +L +DR+ + +AP H
Sbjct: 180 GDGLQMRITGNGFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGR---TAPGH 236
Query: 292 GLCLVEVKYN 301
GL L V Y+
Sbjct: 237 GLYLWSVCYD 246
>gi|331091743|ref|ZP_08340575.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_46FAA]
gi|330402642|gb|EGG82209.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_46FAA]
Length = 245
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 150/252 (59%), Gaps = 9/252 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ +L IAYDGT Y GWQ Q + TI+ IV KAL +KL E + ++GASRTD+GVHA G
Sbjct: 3 RVKLTIAYDGTNYCGWQIQPNGITIEEIVNKAL---SKLTGEKIVVIGASRTDSGVHAMG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
VA F T + E + A+N +LP DI V + +FH R+ K Y Y I N
Sbjct: 60 NVAVFDTETTIPP-ERVAMAVNRILPEDIVVVKSEEVPLDFHPRYCDCEKTYEYHIVNTR 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ P +R Y Y+L+ MR+ A Y +G+HDF++F N++ + + + V++V +++
Sbjct: 119 IPIPTKRLTNYFVSYELDLDKMREGASYLIGEHDFASFCNIKTD--VESTVRTVKELEIL 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E G + + + G+GFLY VR +V L+++G+ P V +IL ++RK ++AP
Sbjct: 177 ENGEEITIRISGNGFLYNMVRIIVGTLIRVGRGFYEPVQVKEILEAKNRK---AAGVTAP 233
Query: 290 PHGLCLVEVKYN 301
PHGL L+E++YN
Sbjct: 234 PHGLMLMEIRYN 245
>gi|229074203|ref|ZP_04207249.1| tRNA pseudouridine synthase A [Bacillus cereus Rock4-18]
gi|228708973|gb|EEL61100.1| tRNA pseudouridine synthase A [Bacillus cereus Rock4-18]
Length = 252
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 146/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLEEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V+++F ++IE
Sbjct: 127 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIFEIELIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL IG+ + PD +P+ILA Q+R+ K AP H
Sbjct: 185 DDELIFRFVGNGFLYNMVRIIVGTLLNIGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 242 GLYLWQVNYN 251
>gi|218895277|ref|YP_002443688.1| tRNA pseudouridine synthase A [Bacillus cereus G9842]
gi|218542262|gb|ACK94656.1| tRNA pseudouridine synthase A [Bacillus cereus G9842]
Length = 252
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ IAYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTIAYDGMHFCGYQIQPKHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + + ALN +LP DI +R + EFHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLEEWQ-WNNALNTMLPDDIVIRRVEKKTEEFHARYGVEKKEYRYRVLLSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 127 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 185 DDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L EV YN
Sbjct: 242 GLYLWEVNYN 251
>gi|229170993|ref|ZP_04298594.1| tRNA pseudouridine synthase A [Bacillus cereus MM3]
gi|228612533|gb|EEK69754.1| tRNA pseudouridine synthase A [Bacillus cereus MM3]
Length = 252
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 148/250 (59%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI ++++ EFHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLEEWQWSNA-LNTMLPDDIVIKQVEKKTEEFHARYGVERKEYRYRVLLSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L + +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 127 DVFRRNYVYQYPYPLEISSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 185 GDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 242 GLYLWQVNYN 251
>gi|220928242|ref|YP_002505151.1| tRNA pseudouridine synthase A [Clostridium cellulolyticum H10]
gi|254789632|sp|B8I814.1|TRUA_CLOCE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|219998570|gb|ACL75171.1| tRNA pseudouridine synthase A [Clostridium cellulolyticum H10]
Length = 245
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 145/252 (57%), Gaps = 10/252 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
K RL I YDGT Y GWQ Q + T+Q +++KAL +KL ED+ + G SRTD GVHA+G
Sbjct: 3 KIRLTIEYDGTNYHGWQIQKNAKTVQEVIQKAL---SKLLGEDVGVTGCSRTDVGVHAYG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVAHF+T G + A+N LLP DI ++ EFHAR+SAK K Y Y IYN
Sbjct: 60 QVAHFLTDSKIPG-DKFSYAINNLLPDDIVIKNSEEVPEEFHARYSAKGKKYRYLIYNSP 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV- 228
R+ + H +LN M++AA YF G+HDF AF ++ + V+ ++ +V
Sbjct: 119 HASAIMRNRSCHVRPELNVAEMQKAAGYFKGEHDFLAFQAT--GGQVRSTVREIYGMEVY 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
++ ++ +EV G+GFLY VR + L+ +G + +P I+A DR + K +A
Sbjct: 177 VKEDNMISIEVSGNGFLYNMVRIIAGTLIYVGMGKLHESEIPGIIAGLDRTKAGK---TA 233
Query: 289 PPHGLCLVEVKY 300
P GL LV++ Y
Sbjct: 234 PAQGLYLVQIYY 245
>gi|1644206|dbj|BAA10987.1| unknown [Bacillus subtilis]
Length = 247
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 145/253 (57%), Gaps = 7/253 (2%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+ + I+YDG + G+Q Q T+Q +EKAL + K ++ + +V + RTD+GVHA
Sbjct: 1 MRLKCTISYDGHLFNGYQVQPGKRTVQDELEKALAVLHK-SKDRIPVVSSGRTDSGVHAA 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF TP S E ALN LLP DI V++ A FHARFSA K Y Y +Y +
Sbjct: 60 GQVIHFDTPLSIPA-ERWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTE 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
D F+RHYAYH Y+LN MR+AA++ +G HDF++F + + + V++++ D
Sbjct: 119 KHPDVFKRHYAYHFSYRLNVQDMREAAKHPIGTHDFTSFCAAKTE--VQDKVRTIYELDW 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E LQ+ + GSGFLY VR + LL G I PD V +L +DR+ + +A
Sbjct: 177 TETADGLQMRITGSGFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAER---TA 233
Query: 289 PPHGLCLVEVKYN 301
P HGL L V Y+
Sbjct: 234 PGHGLYLWNVYYD 246
>gi|407708090|ref|YP_006831675.1| phosphoribosylformylglycinamidine synthase 1 [Bacillus
thuringiensis MC28]
gi|407385775|gb|AFU16276.1| tRNA pseudouridine synthase A [Bacillus thuringiensis MC28]
Length = 257
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 146/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 15 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 72
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 73 IHFDTPLSLEEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTA 131
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V+++F ++IE
Sbjct: 132 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIFEIELIEQ 189
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 190 DDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKVDPDSIPEILAKQNRQFAGK---MAPGH 246
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 247 GLYLWQVNYN 256
>gi|325265188|ref|ZP_08131914.1| tRNA pseudouridine synthase A [Clostridium sp. D5]
gi|324029592|gb|EGB90881.1| tRNA pseudouridine synthase A [Clostridium sp. D5]
Length = 263
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 149/251 (59%), Gaps = 9/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ +L +AYDGT Y GWQ Q + TI+ I+ K L R+T E++R++GASRTD+GVHA G
Sbjct: 3 RIKLTVAYDGTNYCGWQIQPNGITIEEILNKKLSRLTG---EEIRVIGASRTDSGVHALG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
VA F T + + + ALN +P DI + + ++H R+ K Y Y I N
Sbjct: 60 NVAVFDTETTIPP-DRLAYALNQRMPEDIVIVKSEEVPADWHPRYCDTVKTYEYLILNAK 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ DP +R Y Y L+ MR+AA Y G+HDF++F NV+ N + + V++++ D++
Sbjct: 119 IPDPTRRLTTYFVSYDLDLQKMRRAAGYLSGEHDFASFCNVRTN--VEDTVRTIYELDIL 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E G + + + G+GFLY VR +V LL++G+ P+ V IL +DR+ ++AP
Sbjct: 177 ENGEEITIRIRGNGFLYNMVRIIVGTLLRVGRGFYTPEQVKDILEAKDRQAA---GVTAP 233
Query: 290 PHGLCLVEVKY 300
PHGL L+ ++Y
Sbjct: 234 PHGLRLIGIEY 244
>gi|398309251|ref|ZP_10512725.1| tRNA pseudouridine synthase A [Bacillus mojavensis RO-H-1]
Length = 247
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 102/253 (40%), Positives = 144/253 (56%), Gaps = 7/253 (2%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+ + I+YDG + G+Q Q T+Q +EKAL + K ++ + +V + RTD+GVHA
Sbjct: 1 MRLKCTISYDGHLFNGYQVQPGKRTVQDELEKALAVLHK-SKDRIPVVSSGRTDSGVHAA 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF TP S E ALN LLP D+ V+ A FHARFSA K Y Y +Y +
Sbjct: 60 GQVIHFDTPLSIPA-ERWPYALNALLPDDVAVKTAEIADDGFHARFSAVKKEYRYFVYTE 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
D F+RHYAYH Y+LN MR+AA++ +G HDF++F + + + V++++ D
Sbjct: 119 KHPDVFKRHYAYHFSYRLNVQNMREAAKHLLGTHDFTSFCAAKTE--VQDKVRTIYELDW 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E LQ+ + GSGFLY VR + LL G I PD V +L +DR+ + +A
Sbjct: 177 TETDDGLQMRITGSGFLYNMVRIIAGTLLDAGIGKISPDDVKSMLEAKDREAAGR---TA 233
Query: 289 PPHGLCLVEVKYN 301
P HGL L V Y+
Sbjct: 234 PGHGLYLWNVYYD 246
>gi|89898653|ref|YP_515763.1| tRNA pseudouridine synthase A [Chlamydophila felis Fe/C-56]
gi|123735904|sp|Q253C0.1|TRUA_CHLFF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|89332025|dbj|BAE81618.1| tRNA pseudouridine synthase A [Chlamydophila felis Fe/C-56]
Length = 268
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 152/250 (60%), Gaps = 10/250 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L++AY GT YAGWQ Q + +IQ ++E AL RV + + + + RTD+GVHA+GQVA
Sbjct: 6 LLLAYQGTAYAGWQRQPNDLSIQEVIESALARVLG---KPIVVSSSGRTDSGVHAYGQVA 62
Query: 113 HFITPFS--YDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
HF P + +SI LN +LP DI +R++ + FHARFSA +K Y Y +
Sbjct: 63 HFSQPDHPLFSQPQSIKKMLNAILPKDIVIRDVVLSDVNFHARFSAIAKEYRYSLTRSPK 122
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
P+QR++AY+ + + LM++ A+Y +G HDF++F N R+ + +++F+ D+I+
Sbjct: 123 PLPWQRYFAYYPRHSIKIDLMQKGAKYLLGTHDFASFANHGRD--YTSTERTLFKLDIID 180
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
++ + +G+GFLY+ VRN+V LL I KE PP+ + +ILA + R+ K +AP
Sbjct: 181 NEEIVTIICKGNGFLYKMVRNIVGSLLDISKEKYPPEYIQEILAQKSRR---KGPPAAPS 237
Query: 291 HGLCLVEVKY 300
H L L V Y
Sbjct: 238 HALSLHHVCY 247
>gi|228919092|ref|ZP_04082471.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228840617|gb|EEM85879.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 252
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 147/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q + T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLEEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 127 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
+ G+GFLY VR +V LL IG+ + PD +P+ILA Q+R+ K AP H
Sbjct: 185 DDEIIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L EV YN
Sbjct: 242 GLYLWEVNYN 251
>gi|152973988|ref|YP_001373505.1| tRNA pseudouridine synthase A [Bacillus cytotoxicus NVH 391-98]
gi|152022740|gb|ABS20510.1| tRNA pseudouridine synthase A [Bacillus cytotoxicus NVH 391-98]
Length = 247
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGINFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN LLP DI + ++ EFHAR+ K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWGNA-LNTLLPDDIVIVQVEKKTEEFHARYGVVKKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y ++ L+R+A YF+G HDF++F + + + + + V++++ D+ E
Sbjct: 122 DVFRRNYVYQYPYPIDIQLIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIDLFEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G L G+GFLY VR +V LL +G+ + PD +P+ILA QDR+ K P H
Sbjct: 180 GDELVFRFVGNGFLYNMVRIIVGTLLSVGQGKVDPDSIPEILAKQDRRFAGK---MVPGH 236
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 237 GLYLWQVNYN 246
>gi|167036834|ref|YP_001664412.1| tRNA pseudouridine synthase A [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|167039553|ref|YP_001662538.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X514]
gi|256752665|ref|ZP_05493517.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus
CCSD1]
gi|300915196|ref|ZP_07132511.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X561]
gi|307725120|ref|YP_003904871.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X513]
gi|320115256|ref|YP_004185415.1| tRNA pseudouridine synthase A [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|238687621|sp|B0K5S6.1|TRUA_THEPX RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|238687718|sp|B0KCN3.1|TRUA_THEP3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|166853793|gb|ABY92202.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X514]
gi|166855668|gb|ABY94076.1| tRNA pseudouridine synthase A [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|256748485|gb|EEU61537.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus
CCSD1]
gi|300888920|gb|EFK84067.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X561]
gi|307582181|gb|ADN55580.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X513]
gi|319928347|gb|ADV79032.1| tRNA pseudouridine synthase A [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 244
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 143/248 (57%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
+V+ YDGT Y GWQ+Q + T+Q +++KA+ +VT E++ L+GASRTDTGVHA QVA
Sbjct: 6 IVVEYDGTNYHGWQYQKNAVTVQEVLQKAIKKVTG---EEVNLIGASRTDTGVHALYQVA 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T E + ALN +LP DI V + FHAR+SAK K Y Y I N
Sbjct: 63 NFKTNTKIPA-EKLPYALNSVLPDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRKFQM 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P R+Y +H Y LN M++AA Y +G HDFSAF + +++V+ + +
Sbjct: 122 PTMRNYCWHISYPLNIEEMKKAASYLIGTHDFSAF--KASGSSKTSTIRTVYDLTIEKNE 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ +E+E +GFLY VR +V L +G I D V IL ++DR K ++APP G
Sbjct: 180 DFINIEIEANGFLYNMVRIIVGTLSYVGLGKIKEDEVYDILKSKDR---TKAGITAPPQG 236
Query: 293 LCLVEVKY 300
L L+++ Y
Sbjct: 237 LYLIKIIY 244
>gi|423364434|ref|ZP_17341924.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD022]
gi|423565500|ref|ZP_17541776.1| tRNA pseudouridine synthase A 1 [Bacillus cereus MSX-A1]
gi|401072853|gb|EJP81307.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD022]
gi|401193702|gb|EJR00705.1| tRNA pseudouridine synthase A 1 [Bacillus cereus MSX-A1]
Length = 247
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGMHFCGYQIQPKHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + + ALN +LP DI +R + EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQ-WNNALNTMLPDDIVIRRVEKKTEEFHARYGVEKKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 DDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L EV YN
Sbjct: 237 GLYLWEVNYN 246
>gi|423578549|ref|ZP_17554660.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD014]
gi|423638145|ref|ZP_17613797.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD156]
gi|401221274|gb|EJR27898.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD014]
gi|401271869|gb|EJR77872.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD156]
Length = 247
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 147/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q + T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
+ G+GFLY VR +V LL IG+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 DDEIIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L EV YN
Sbjct: 237 GLYLWEVNYN 246
>gi|229094864|ref|ZP_04225869.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-29]
gi|229100941|ref|ZP_04231745.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-28]
gi|229113818|ref|ZP_04243253.1| tRNA pseudouridine synthase A [Bacillus cereus Rock1-3]
gi|228669689|gb|EEL25096.1| tRNA pseudouridine synthase A [Bacillus cereus Rock1-3]
gi|228682520|gb|EEL36593.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-28]
gi|228688607|gb|EEL42480.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-29]
Length = 252
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 146/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLEEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V+++F ++IE
Sbjct: 127 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIFEIELIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 185 DDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 242 GLYLWQVNYN 251
>gi|423381811|ref|ZP_17359094.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG1O-2]
gi|423439680|ref|ZP_17416586.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG4X2-1]
gi|423450163|ref|ZP_17427041.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG5O-1]
gi|423467937|ref|ZP_17444705.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG6O-1]
gi|423537337|ref|ZP_17513755.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuB2-9]
gi|423543065|ref|ZP_17519453.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuB4-10]
gi|423543629|ref|ZP_17519987.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuB5-5]
gi|423620250|ref|ZP_17596081.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD115]
gi|423626916|ref|ZP_17602691.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD148]
gi|401126786|gb|EJQ34520.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG5O-1]
gi|401166765|gb|EJQ74065.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuB4-10]
gi|401187794|gb|EJQ94866.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuB5-5]
gi|401248810|gb|EJR55131.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD115]
gi|401250111|gb|EJR56415.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD148]
gi|401628437|gb|EJS46278.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG1O-2]
gi|402411804|gb|EJV44167.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG6O-1]
gi|402421861|gb|EJV54105.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG4X2-1]
gi|402459043|gb|EJV90781.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuB2-9]
Length = 247
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 146/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V+++F ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIFEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 DDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 237 GLYLWQVNYN 246
>gi|75764616|ref|ZP_00744060.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74487896|gb|EAO51668.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 264
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 22 KCTVAYDGMHFCGYQIQPKHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 79
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + + ALN +LP DI +R + EFHAR+ + K Y Y++
Sbjct: 80 IHFDTPLSLEEWQW-NNALNTMLPDDIVIRRVEKKTEEFHARYGVEKKEYRYRVLLSKTA 138
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 139 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 196
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 197 DDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 253
Query: 292 GLCLVEVKYN 301
GL L EV YN
Sbjct: 254 GLYLWEVNYN 263
>gi|228898895|ref|ZP_04063177.1| tRNA pseudouridine synthase A [Bacillus thuringiensis IBL 4222]
gi|228963242|ref|ZP_04124411.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar sotto
str. T04001]
gi|402562765|ref|YP_006605489.1| tRNA pseudouridine synthase A [Bacillus thuringiensis HD-771]
gi|434378787|ref|YP_006613431.1| tRNA pseudouridine synthase A [Bacillus thuringiensis HD-789]
gi|228796500|gb|EEM43939.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228860795|gb|EEN05173.1| tRNA pseudouridine synthase A [Bacillus thuringiensis IBL 4222]
gi|401791417|gb|AFQ17456.1| tRNA pseudouridine synthase A [Bacillus thuringiensis HD-771]
gi|401877344|gb|AFQ29511.1| tRNA pseudouridine synthase A [Bacillus thuringiensis HD-789]
Length = 252
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGMHFCGYQIQPKHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + + ALN +LP DI +R + EFHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLEEWQ-WNNALNTMLPDDIVIRRVEKKTEEFHARYGVEKKEYRYRVLLSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 127 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 185 DDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L EV YN
Sbjct: 242 GLYLWEVNYN 251
>gi|134298133|ref|YP_001111629.1| tRNA pseudouridine synthase A [Desulfotomaculum reducens MI-1]
gi|172044244|sp|A4J151.1|TRUA_DESRM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|134050833|gb|ABO48804.1| tRNA pseudouridine synthase A [Desulfotomaculum reducens MI-1]
Length = 247
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 102/251 (40%), Positives = 151/251 (60%), Gaps = 10/251 (3%)
Query: 52 RLVIAYDGTRYAGWQFQ--TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+L +AYDGT Y G+Q Q T TIQ +EKAL + + + ++++GA RTD GVHA G
Sbjct: 5 KLTLAYDGTNYHGFQEQRGTGLATIQEALEKAL---STIAQTPIQVIGAGRTDAGVHAQG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV +F + E ALN LLP DI+V + +FHARFSA +K Y Y IY+
Sbjct: 62 QVVNFRSEKWPVPAEKAPLALNVLLPGDIKVVKAEEVPMDFHARFSAVAKTYRYSIYHHR 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
VM PF R+Y YH +L+ M++ A Y +G +DF +F + + + +++++R D+I
Sbjct: 122 VMSPFHRYYCYHEPRRLDVNAMQEGAAYLLGTYDFKSF--QAQGTPVKDTIRTIYRADII 179
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E ++ L + G+GFLY VR + LL IG I P+ + KI+ +++R LA +AP
Sbjct: 180 EDAPVINLYLRGNGFLYNMVRIITGTLLNIGFGKIKPEDMVKIIESKNRT-LA--GTTAP 236
Query: 290 PHGLCLVEVKY 300
P GLCL+EV+Y
Sbjct: 237 PQGLCLMEVEY 247
>gi|423387372|ref|ZP_17364626.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG1X1-2]
gi|423526560|ref|ZP_17503005.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuB1-1]
gi|401628955|gb|EJS46783.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG1X1-2]
gi|402455600|gb|EJV87381.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuB1-1]
Length = 247
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 146/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGMHFCGYQIQPKHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEIKKIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 DDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L EV YN
Sbjct: 237 GLYLWEVNYN 246
>gi|229067907|ref|ZP_04201224.1| tRNA pseudouridine synthase A [Bacillus cereus F65185]
gi|228715266|gb|EEL67125.1| tRNA pseudouridine synthase A [Bacillus cereus F65185]
Length = 252
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 147/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q + T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF T S + + I+A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 68 IHFDTSLSLEEWQWINA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 127 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
+ G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 185 NDEIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L EV YN
Sbjct: 242 GLYLWEVNYN 251
>gi|410668857|ref|YP_006921228.1| tRNA pseudouridine synthase A [Thermacetogenium phaeum DSM 12270]
gi|409106604|gb|AFV12729.1| tRNA pseudouridine synthase A [Thermacetogenium phaeum DSM 12270]
Length = 262
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 110/267 (41%), Positives = 148/267 (55%), Gaps = 13/267 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPP--TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
RL + YDGT +AG+Q QT T+Q ++E+AL R+T E +++VGA RTD GVHA G
Sbjct: 5 RLCLEYDGTNFAGFQKQTGTGLRTVQGVLEEALARLTG---EGIKIVGAGRTDKGVHALG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF T S +E AALNGLLPPD+ V + A FHAR+ A K Y Y I N
Sbjct: 62 QVVHFDTCSSIP-VERFPAALNGLLPPDLVVLSAALADTSFHARYGAVGKRYSYLILNSR 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
R Y Y L+ T MR A ++F G+HDF F + + + V+ +F FD+
Sbjct: 121 RPTALWRSRCYQYPYSLDLTAMRLAVQFFHGEHDFQGFSATGSSAQ--STVRRIFSFDID 178
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E G + V GFLY+ VR MV LL++G+ + P V +IL DR E + + P
Sbjct: 179 EQGDWICFSVTADGFLYKMVRLMVGTLLEVGRGKMRPQQVKEIL---DRGERGEGGPALP 235
Query: 290 PHGLCLVEVKY--NEEHLRLPAACPLS 314
P GL LV+V Y E+ + L P+S
Sbjct: 236 PQGLYLVKVYYPGEEKGMFLDRVWPIS 262
>gi|184155960|ref|YP_001844300.1| tRNA pseudouridine synthase A [Lactobacillus fermentum IFO 3956]
gi|238692990|sp|B2GDT8.1|TRUA_LACF3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|183227304|dbj|BAG27820.1| pseudouridylate synthase A [Lactobacillus fermentum IFO 3956]
Length = 258
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/260 (39%), Positives = 154/260 (59%), Gaps = 20/260 (7%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ AYDG+ +AG+Q Q T+Q ++E+A+ ++ K + L + G+ RTD GVHA G
Sbjct: 3 RYKITFAYDGSNFAGFQIQPGERTVQQVLERAVNKIAKKPQPPLMVFGSGRTDAGVHALG 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVAHF P+ G S+ ALN LP D+ V+E + P+FHARF A K Y Y++
Sbjct: 63 QVAHFDLPYQIPG-PSLVRALNSSLPLDVLVKEATEVAPDFHARFDAHHKRYRYRVVGGE 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--------NVQRNDRLLNPVK 221
+PF+R+Y H Y ++ M+ AA+ FVG+HDF++FV NV+R D +
Sbjct: 122 FTNPFKRNYTGHYKYPVDVERMQTAAQDFVGEHDFTSFVASGSQATSNVRRIDEV----- 176
Query: 222 SVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKEL 281
+V R E + + G+GFLY QVR MVA LL+IG P D V +++ ++R +L
Sbjct: 177 TVVR---DEENDEVVFDFVGNGFLYNQVRIMVAFLLEIGNGRRPVDDVMRVMKAKNR-DL 232
Query: 282 AKYALSAPPHGLCLVEVKYN 301
A+ +AP GL LVEV Y+
Sbjct: 233 AR--GTAPASGLYLVEVTYD 250
>gi|423590571|ref|ZP_17566633.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD045]
gi|423632051|ref|ZP_17607797.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD154]
gi|423645039|ref|ZP_17620655.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD166]
gi|423646277|ref|ZP_17621847.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD169]
gi|51340814|sp|Q814C2.2|TRUA1_BACCR RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 1; AltName: Full=tRNA-uridine
isomerase I 1
gi|401220208|gb|EJR26850.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD045]
gi|401262770|gb|EJR68908.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD154]
gi|401267734|gb|EJR73790.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD166]
gi|401287906|gb|EJR93673.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD169]
Length = 247
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 147/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q + T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
+ G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 DDEIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L EV YN
Sbjct: 237 GLYLWEVNYN 246
>gi|30018411|ref|NP_830042.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 14579]
gi|206972233|ref|ZP_03233180.1| tRNA pseudouridine synthase A [Bacillus cereus AH1134]
gi|228956583|ref|ZP_04118379.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229041047|ref|ZP_04189810.1| tRNA pseudouridine synthase A [Bacillus cereus AH676]
gi|229125659|ref|ZP_04254691.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-Cer4]
gi|229142948|ref|ZP_04271389.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST24]
gi|229188427|ref|ZP_04315475.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10876]
gi|296500975|ref|YP_003662675.1| tRNA pseudouridine synthase A [Bacillus thuringiensis BMB171]
gi|29893951|gb|AAP07243.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 14579]
gi|206732807|gb|EDZ49982.1| tRNA pseudouridine synthase A [Bacillus cereus AH1134]
gi|228595101|gb|EEK52872.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10876]
gi|228640569|gb|EEK96958.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST24]
gi|228657851|gb|EEL13657.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-Cer4]
gi|228727344|gb|EEL78538.1| tRNA pseudouridine synthase A [Bacillus cereus AH676]
gi|228803148|gb|EEM49970.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|296322027|gb|ADH04955.1| tRNA pseudouridine synthase A [Bacillus thuringiensis BMB171]
Length = 252
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 147/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q + T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLEEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 127 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
+ G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 185 DDEIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L EV YN
Sbjct: 242 GLYLWEVNYN 251
>gi|228937445|ref|ZP_04100091.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228970331|ref|ZP_04130990.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228976901|ref|ZP_04137313.1| tRNA pseudouridine synthase A [Bacillus thuringiensis Bt407]
gi|384184228|ref|YP_005570124.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
chinensis CT-43]
gi|228782871|gb|EEM31037.1| tRNA pseudouridine synthase A [Bacillus thuringiensis Bt407]
gi|228789440|gb|EEM37360.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228822278|gb|EEM68260.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326937937|gb|AEA13833.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 252
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 146/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGMHFCGYQIQPKHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLEEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 127 DVFRRNYVYQYPYPLEIKKIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 185 DDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L EV YN
Sbjct: 242 GLYLWEVNYN 251
>gi|410672513|ref|YP_006924884.1| tRNA pseudouridine synthase A 1 [Bacillus thuringiensis Bt407]
gi|452196520|ref|YP_007476601.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|409171642|gb|AFV15947.1| tRNA pseudouridine synthase A 1 [Bacillus thuringiensis Bt407]
gi|452101913|gb|AGF98852.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 247
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 146/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGMHFCGYQIQPKHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEIKKIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 DDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L EV YN
Sbjct: 237 GLYLWEVNYN 246
>gi|387928079|ref|ZP_10130757.1| tRNA pseudouridine synthase A [Bacillus methanolicus PB1]
gi|387587665|gb|EIJ79987.1| tRNA pseudouridine synthase A [Bacillus methanolicus PB1]
Length = 245
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 144/251 (57%), Gaps = 8/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I YDG++++G+Q Q TIQ +E AL ++ K +R +++ + RTD GVHA G
Sbjct: 3 RFKCTITYDGSQFSGYQIQPGKRTIQGEIEVALSKLHKGKR--IKISASGRTDAGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + + E ALN +LP DI V + A P FHARF A K Y Y ++
Sbjct: 61 QVIHFDSALAI-STEKWEIALNSILPDDIAVIRVEKAAPGFHARFDAFGKEYRYFVHLSP 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
DPF+RHYAY Y L+ M++A +Y +G HDF++F + + + + V+++ + D
Sbjct: 120 KRDPFKRHYAYQFPYPLDYAAMKEALKYLIGTHDFTSFCSAKTE--IEDKVRTIEKIDFF 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G LL G+GFLY VR + LL++G + PD +P IL +DRK K +AP
Sbjct: 178 QEGDLLVFRFIGNGFLYNMVRILTGTLLEVGSGSRSPDSIPDILEKKDRKFAGK---TAP 234
Query: 290 PHGLCLVEVKY 300
HGL L V Y
Sbjct: 235 AHGLYLWRVFY 245
>gi|255284006|ref|ZP_05348561.1| tRNA pseudouridine synthase A [Bryantella formatexigens DSM 14469]
gi|255265459|gb|EET58664.1| tRNA pseudouridine synthase A [Marvinbryantia formatexigens DSM
14469]
Length = 245
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 148/251 (58%), Gaps = 9/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ +L++AYDGT Y+GWQ Q + TI+ ++ + +++L E +R++GASRTD GVHA G
Sbjct: 3 RVKLIVAYDGTNYSGWQIQPNAVTIESMLN---LHLSELLGEPIRVIGASRTDAGVHALG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
VA F T E I A+N LP DIR+++ +FH RF K Y Y+I N
Sbjct: 60 NVAVFDTSARMPA-EKISYAMNTRLPQDIRIQDSCEVAADFHPRFCKTIKTYEYRILNRR 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
DP +R Y+ Y L+ MR+A Y VG+HDF + + + N V++++ D+
Sbjct: 119 FPDPTRRLYSLFYYYPLDVENMRRALAYLVGEHDFKSLCT--HKEEVENTVRTIYEADIQ 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G ++ + + G+GFLY VR +V LL++G PP+ + ++LA ++R+ + +AP
Sbjct: 177 KDGDMISIRISGNGFLYNMVRIIVGTLLRVGSGYYPPEYMQELLAAKNRQAAGE---TAP 233
Query: 290 PHGLCLVEVKY 300
P GL L+E++Y
Sbjct: 234 PQGLTLLEIRY 244
>gi|423653076|ref|ZP_17628375.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD200]
gi|401303184|gb|EJS08747.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD200]
Length = 247
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 147/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q + T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGMHFCGYQIQPNHRTVQHEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
+ G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 DDEIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L EV YN
Sbjct: 237 GLYLWEVNYN 246
>gi|227515518|ref|ZP_03945567.1| tRNA-pseudouridine synthase I [Lactobacillus fermentum ATCC 14931]
gi|227086131|gb|EEI21443.1| tRNA-pseudouridine synthase I [Lactobacillus fermentum ATCC 14931]
Length = 258
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/260 (39%), Positives = 154/260 (59%), Gaps = 20/260 (7%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ AYDG+ +AG+Q Q T+Q ++E+A+ ++ K + L + G+ RTD GVHA G
Sbjct: 3 RYKITFAYDGSNFAGFQVQPGERTVQQVLERAVNKIAKKPQPPLMVFGSGRTDAGVHALG 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVAHF P+ G S+ ALN LP D+ V+E + P+FHARF A K Y Y++
Sbjct: 63 QVAHFDLPYQIPG-PSLVRALNSSLPLDVLVKEATEVAPDFHARFDAHHKRYRYRVVGGE 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--------NVQRNDRLLNPVK 221
+PF+R+Y H Y ++ M+ AA+ FVG+HDF++FV NV+R D +
Sbjct: 122 FTNPFKRNYTGHYKYPVDVERMQTAAQDFVGEHDFTSFVASGSQATSNVRRIDEV----- 176
Query: 222 SVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKEL 281
+V R E + + G+GFLY QVR MVA LL+IG P D V +++ ++R +L
Sbjct: 177 TVVR---DEENDEVVFDFVGNGFLYNQVRIMVAFLLEIGNGRRPVDDVMRVMKAKNR-DL 232
Query: 282 AKYALSAPPHGLCLVEVKYN 301
A+ +AP GL LVEV Y+
Sbjct: 233 AR--GTAPASGLYLVEVTYD 250
>gi|317055617|ref|YP_004104084.1| tRNA pseudouridine synthase A [Ruminococcus albus 7]
gi|315447886|gb|ADU21450.1| tRNA pseudouridine synthase A [Ruminococcus albus 7]
Length = 245
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/256 (39%), Positives = 144/256 (56%), Gaps = 21/256 (8%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
+ +AYDG+ Y GWQ Q++ +Q +VE A+ ++T E++ + G SRTD GVHA V
Sbjct: 1 MTLAYDGSNYHGWQRQSNALAVQEVVEDAIFKLTG---ENVVVQGCSRTDAGVHAREYVL 57
Query: 113 HFITPFSYDGLE------SIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIY 166
F GLE I LN LP DI V A FHAR+ K K Y Y ++
Sbjct: 58 SF-------GLELPINCRGIQLGLNSWLPDDISVIGCEEADEGFHARYMCKGKEYEYIVH 110
Query: 167 NDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRF 226
N + DPF R+ A+ + Y ++ L+ +AA+YFVG+HDF AF + + + V+ ++RF
Sbjct: 111 NSRIKDPFMRNTAFRNTYPIDEVLLDRAAKYFVGEHDFKAFCSTACDKEI--TVRKIYRF 168
Query: 227 DVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
DV G + V G+GFLY VR MV LL I + I D +P+IL ++DRK+ K
Sbjct: 169 DVRREGDKVIFTVAGNGFLYNMVRIMVGTLLFINEGKIAADAIPRILDSKDRKKAGK--- 225
Query: 287 SAPPHGLCLVEVKYNE 302
+ PP GL L +V Y+E
Sbjct: 226 TVPPQGLYLNKVYYDE 241
>gi|423480286|ref|ZP_17456976.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG6X1-2]
gi|401149291|gb|EJQ56766.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG6X1-2]
Length = 247
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 146/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGIHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEIDSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL IG+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 DDELIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQCAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 237 GLYLWQVNYN 246
>gi|451348462|ref|YP_007447093.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens IT-45]
gi|449852220|gb|AGF29212.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens IT-45]
Length = 247
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 140/250 (56%), Gaps = 7/250 (2%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ IAYDG + G+Q Q T+Q +EKAL + K + + ++ + RTD+ VHA GQV
Sbjct: 4 KCTIAYDGHLFNGYQVQPGKRTVQSELEKALAVIHKTDGR-VPVISSGRTDSDVHAAGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S E ALN LLP DI V+ A FHARFSA K Y Y +Y +
Sbjct: 63 IHFDTPLSIPA-EKWPFALNALLPDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTEKHP 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+RHYAYH Y+LN MR+A+ + +G HDF++F + + + V++++ D E
Sbjct: 122 DVFKRHYAYHFAYQLNVQKMREASRHLIGTHDFTSFCAA--DTAVQDKVRTIYELDWTET 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G LQ+ + G+GFLY VR + LL G PD V +L +DR+ + +AP H
Sbjct: 180 GDGLQMRITGNGFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGR---TAPGH 236
Query: 292 GLCLVEVKYN 301
GL L V Y+
Sbjct: 237 GLYLWSVCYD 246
>gi|423456237|ref|ZP_17433090.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG5X1-1]
gi|401130836|gb|EJQ38491.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG5X1-1]
Length = 247
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 146/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGIHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIIIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEIDSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL IG+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 DDELIFRFVGNGFLYNMVRIIVGTLLNIGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 237 GLYLWQVNYN 246
>gi|423462584|ref|ZP_17439378.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG5X2-1]
gi|401130763|gb|EJQ38419.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG5X2-1]
Length = 247
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 147/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L + +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEISSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G L G+GFLY VR +V LL +G+ + PD + +ILA Q+R+ K AP H
Sbjct: 180 GDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSISEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 237 GLYLWQVNYN 246
>gi|423473167|ref|ZP_17449909.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG6O-2]
gi|402426665|gb|EJV58786.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG6O-2]
Length = 247
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 146/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGIHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIIIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEIDSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL IG+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 DDELIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 237 GLYLWQVNYN 246
>gi|392939543|ref|ZP_10305187.1| pseudouridylate synthase I [Thermoanaerobacter siderophilus SR4]
gi|392291293|gb|EIV99736.1| pseudouridylate synthase I [Thermoanaerobacter siderophilus SR4]
Length = 244
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 144/248 (58%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
+V+ YDGT Y GWQ+Q + T+Q +++KA+ +VT E++ L+GASRTDTGVHA QVA
Sbjct: 6 IVVEYDGTNYHGWQYQENAVTVQEVLQKAIKKVTG---EEVNLIGASRTDTGVHALYQVA 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T E + ALN +LP DI V + FHAR+SAK K Y Y I N
Sbjct: 63 NFRTNTKIPA-EKLPYALNSVLPDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRKFPM 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P R+Y +H Y LN M++AA Y +G HDFSAF + +++V+ + +
Sbjct: 122 PTMRNYCWHIGYPLNIEEMKKAASYLIGTHDFSAF--RASGSSKTSTIRTVYDLTIEKNE 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ +E+E +GFLY VR +V L+ +G I D V IL ++DR K ++APP G
Sbjct: 180 DFINIEIEANGFLYNMVRIIVGTLVYVGLGKIKEDEVYDILKSRDR---TKAGVTAPPQG 236
Query: 293 LCLVEVKY 300
L L+++ Y
Sbjct: 237 LYLIKIMY 244
>gi|319789624|ref|YP_004151257.1| tRNA pseudouridine synthase A [Thermovibrio ammonificans HB-1]
gi|317114126|gb|ADU96616.1| tRNA pseudouridine synthase A [Thermovibrio ammonificans HB-1]
Length = 254
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/256 (38%), Positives = 151/256 (58%), Gaps = 12/256 (4%)
Query: 51 WRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
++L + Y GT Y GWQF PT+Q + + L V R ++L+GASRTD GVHA GQ
Sbjct: 4 FKLTVEYLGTNYYGWQFLPDKPTVQGEIIRCLETVL---RHPVKLIGASRTDAGVHARGQ 60
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F+T E + +ALNGLLPPDIRV+E+ EFHAR SA+ K+Y Y+++ V
Sbjct: 61 VANFLTAKEV-SCEKLLSALNGLLPPDIRVKEVEEVPLEFHARRSARGKLYRYRLFIRDV 119
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI- 229
PF+ +++ L+ MR+A ++ VG HDF+ F +R R +NP++++ + ++
Sbjct: 120 PSPFEFRRSWYLRRTLSVEPMREATQFLVGTHDFTTFSKSERK-REVNPIRTIDKIEITN 178
Query: 230 ---EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
E G L++L G FL VR +VA L+++G + P V ++L +DR ++
Sbjct: 179 KEWEEGVLVELLFTGRSFLRHMVRVIVATLVKVGTGEVKPQEVKEMLQAKDR---SRAPF 235
Query: 287 SAPPHGLCLVEVKYNE 302
APP GL L V Y++
Sbjct: 236 LAPPDGLYLERVFYDD 251
>gi|15618490|ref|NP_224776.1| tRNA pseudouridine synthase A [Chlamydophila pneumoniae CWL029]
gi|33241935|ref|NP_876876.1| tRNA pseudouridine synthase A [Chlamydophila pneumoniae TW-183]
gi|4376873|gb|AAD18719.1| Pseudouridylate Synthase I [Chlamydophila pneumoniae CWL029]
gi|33236445|gb|AAP98533.1| pseudouridylate synthase I [Chlamydophila pneumoniae TW-183]
Length = 267
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/257 (38%), Positives = 151/257 (58%), Gaps = 14/257 (5%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
K L+IAY GT Y+GWQ Q + +IQ ++E +L ++TK L+ + RTD GVHA+G
Sbjct: 3 KVALLIAYQGTAYSGWQQQPNDLSIQEVIESSLKKITKTRTP---LIASGRTDAGVHAYG 59
Query: 110 QVAHFITP----FSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKI 165
QVAHF P F+ L ALN +LP DI +R+++ FHAR+ A +K Y Y +
Sbjct: 60 QVAHFRAPDHPLFANANLTK--KALNAILPKDIVIRDVALFDDNFHARYLAIAKEYRYSL 117
Query: 166 YNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFR 225
A P+QRH+ Y + +T LM++ A +G HDF++F N R+ + V++++
Sbjct: 118 SRLAKPLPWQRHFCYTPRHPFSTELMQEGANLLIGTHDFASFANHGRDYN--STVRTIYT 175
Query: 226 FDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
D+++ G L + G+GFLY+ VRN+V LL +GK A PP+ + IL ++R+E
Sbjct: 176 LDIVDKGDSLSIICRGNGFLYKMVRNLVGALLDVGKGAYPPEHLLDILEQKNRREGPS-- 233
Query: 286 LSAPPHGLCLVEVKYNE 302
+AP +GL L V Y+
Sbjct: 234 -AAPAYGLSLHHVCYSS 249
>gi|163938150|ref|YP_001643034.1| tRNA pseudouridine synthase A [Bacillus weihenstephanensis KBAB4]
gi|163860347|gb|ABY41406.1| tRNA pseudouridine synthase A [Bacillus weihenstephanensis KBAB4]
Length = 252
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 146/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGIHFCGYQIQPHHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLEEWQWSNA-LNSMLPDDIIIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 127 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 185 DDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 242 GLYLWQVNYN 251
>gi|423485441|ref|ZP_17462123.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BtB2-4]
gi|423491166|ref|ZP_17467810.1| tRNA pseudouridine synthase A 1 [Bacillus cereus CER057]
gi|423502038|ref|ZP_17478655.1| tRNA pseudouridine synthase A 1 [Bacillus cereus CER074]
gi|423526356|ref|ZP_17502805.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuA4-10]
gi|423556862|ref|ZP_17533165.1| tRNA pseudouridine synthase A 1 [Bacillus cereus MC67]
gi|423597031|ref|ZP_17573041.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD048]
gi|423671591|ref|ZP_17646595.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VDM034]
gi|423672605|ref|ZP_17647544.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VDM062]
gi|401151432|gb|EJQ58883.1| tRNA pseudouridine synthase A 1 [Bacillus cereus CER074]
gi|401162091|gb|EJQ69450.1| tRNA pseudouridine synthase A 1 [Bacillus cereus CER057]
gi|401163406|gb|EJQ70752.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuA4-10]
gi|401194177|gb|EJR01169.1| tRNA pseudouridine synthase A 1 [Bacillus cereus MC67]
gi|401218208|gb|EJR24892.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD048]
gi|401291980|gb|EJR97645.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VDM034]
gi|401311465|gb|EJS16760.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VDM062]
gi|402441632|gb|EJV73582.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BtB2-4]
Length = 247
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 146/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGIHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIIIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 DDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 237 GLYLWQVNYN 246
>gi|229009651|ref|ZP_04166877.1| tRNA pseudouridine synthase A [Bacillus mycoides DSM 2048]
gi|229131150|ref|ZP_04260062.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST196]
gi|229165130|ref|ZP_04292925.1| tRNA pseudouridine synthase A [Bacillus cereus AH621]
gi|228618393|gb|EEK75423.1| tRNA pseudouridine synthase A [Bacillus cereus AH621]
gi|228652363|gb|EEL08288.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST196]
gi|228751673|gb|EEM01473.1| tRNA pseudouridine synthase A [Bacillus mycoides DSM 2048]
Length = 252
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 146/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGIHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLEEWQWSNA-LNTMLPDDIIIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 127 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 185 DDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 242 GLYLWQVNYN 251
>gi|423334733|ref|ZP_17312511.1| tRNA pseudouridine synthase A [Lactobacillus reuteri ATCC 53608]
gi|337728254|emb|CCC03349.1| tRNA pseudouridine synthase A [Lactobacillus reuteri ATCC 53608]
Length = 256
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/261 (38%), Positives = 152/261 (58%), Gaps = 14/261 (5%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+++++ AYDGT ++G+Q Q + T++ ++ A+ ++ K + ++G+ RTD GVHA
Sbjct: 2 YRYKITFAYDGTNFSGFQIQPNKRTVEQTLKNAVNKIAKHPTPAIPVIGSGRTDAGVHAL 61
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
QVAHF P+ ES+ ALN +LP DI +++ +FHAR+SA K Y Y++
Sbjct: 62 NQVAHFDIPYHLSN-ESMRKALNSILPLDILIKKAELVDNDFHARYSAHRKTYRYRVDQG 120
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV----NVQRNDRLLNPVKSVF 224
++PF+R+Y H Y LN MR+AA VG HDF++FV + N R + +
Sbjct: 121 EFVNPFKRNYTSHFKYPLNLEKMRKAASDLVGTHDFTSFVASGSQAKSNVRTIENI--TI 178
Query: 225 RFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
R D E+ + + G+GFLY QVR MVA LL+IG P D V ++L +DR LA+
Sbjct: 179 RRD--ELRNEVVFDFTGNGFLYNQVRIMVAFLLEIGSNQRPVDDVSRVLTAKDR-TLAR- 234
Query: 285 ALSAPPHGLCLVEVKY--NEE 303
++AP GL LV V Y N+E
Sbjct: 235 -MTAPASGLYLVNVDYGTNDE 254
>gi|297545296|ref|YP_003677598.1| tRNA pseudouridine synthase A [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296843071|gb|ADH61587.1| tRNA pseudouridine synthase A [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 240
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 143/248 (57%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
+V+ YDGT Y GWQ+Q + T+Q +++KA+ +VT E++ L+GASRTDTGVHA QVA
Sbjct: 2 IVVQYDGTNYHGWQYQKNAITVQEVLQKAIKKVTG---EEVNLIGASRTDTGVHALYQVA 58
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T E + ALN +LP DI + + FHAR+SAK K Y Y I N
Sbjct: 59 NFKTNTKIPA-EKLPYALNSVLPDDIVITQAKDVEDSFHARYSAKRKRYKYLILNRKFRM 117
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P R+Y +H Y LN M++AA Y +G HDFSAF + +++V+ + +
Sbjct: 118 PTMRNYCWHISYPLNVEKMKKAATYLIGTHDFSAF--KASGSSKTSTIRTVYDLIIEKNE 175
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ +E+E GFLY VR +V L +G I + V ILA++DR K ++APP G
Sbjct: 176 DFINIEIEADGFLYNMVRIIVGTLSYVGLGKIGENEVYNILASKDR---TKAGITAPPQG 232
Query: 293 LCLVEVKY 300
L L+++ Y
Sbjct: 233 LYLIKIIY 240
>gi|153813476|ref|ZP_01966144.1| hypothetical protein RUMOBE_03896 [Ruminococcus obeum ATCC 29174]
gi|149830420|gb|EDM85512.1| tRNA pseudouridine synthase A [Ruminococcus obeum ATCC 29174]
Length = 250
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 141/248 (56%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
LV+AYDGT Y+GWQ Q + TIQ ++ AL T L E + ++GASRTD GVHA G VA
Sbjct: 10 LVVAYDGTNYSGWQIQPNGITIQGVLNDAL---TDLLGEKIEIMGASRTDAGVHALGNVA 66
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
F T G E I ALN LP DIR++ P+FH R+ K Y Y+I N
Sbjct: 67 VFDTNTRIPG-EKISYALNQRLPEDIRIQLSEEVEPDFHPRYCDSEKTYEYRILNRKFPV 125
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P +R Y+Y YKL+ MR+A Y +G+HDF++F ++ + V+++ D+ G
Sbjct: 126 PTERLYSYFYHYKLDVDKMREATSYLIGRHDFASFCGT--GAQVKSTVRTLTGIDIWRDG 183
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
++ + V+G GFLY VR + L+Q+G PP+ V KIL DR + +AP HG
Sbjct: 184 DIVTIRVKGEGFLYNMVRIIAGTLIQVGNGQYPPERVKKILDACDR---SVSGPTAPAHG 240
Query: 293 LCLVEVKY 300
L L+ +++
Sbjct: 241 LTLMGIEF 248
>gi|407978647|ref|ZP_11159476.1| tRNA pseudouridine synthase A [Bacillus sp. HYC-10]
gi|407414843|gb|EKF36469.1| tRNA pseudouridine synthase A [Bacillus sp. HYC-10]
Length = 247
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/253 (39%), Positives = 143/253 (56%), Gaps = 7/253 (2%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
K + ++YDGT + G+Q Q T+Q +E AL ++ K + E + +V + RTD+GVHA
Sbjct: 1 MKVKCTVSYDGTHFKGYQVQPGQRTVQTEIESALAKMHK-QDELIPIVASGRTDSGVHAK 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF TP + +E ALN LLP DIRV + FHARF SK Y YK+ +
Sbjct: 60 GQVIHFDTPLAIP-MERWPFALNSLLPDDIRVLKAEEVDESFHARFGVASKEYRYKVSTE 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
+ F R YA H Y L+ MR+AAEY +G HDF++F N + + V+ ++ +
Sbjct: 119 THQNVFTRQYACHYPYPLDVDKMREAAEYLIGSHDFTSFCAA--NTEVQDKVRVIYALEW 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ L++ V GSGFLY VR M LL+IG P+ + +LA ++R+ K +A
Sbjct: 177 KNVSDGLEMRVRGSGFLYNMVRIMAGTLLEIGAGKFHPEEIKAMLAARNREAAGK---TA 233
Query: 289 PPHGLCLVEVKYN 301
P HGL L EV Y+
Sbjct: 234 PSHGLYLWEVFYD 246
>gi|423602329|ref|ZP_17578329.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD078]
gi|423665345|ref|ZP_17640484.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VDM022]
gi|401225868|gb|EJR32412.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD078]
gi|401290252|gb|EJR95947.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VDM022]
Length = 247
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 146/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGIHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIIIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 DDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFSGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 237 GLYLWQVNYN 246
>gi|423514594|ref|ZP_17491101.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuA2-1]
gi|423514994|ref|ZP_17491475.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuA2-4]
gi|401168495|gb|EJQ75758.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuA2-4]
gi|402441994|gb|EJV73938.1| tRNA pseudouridine synthase A 1 [Bacillus cereus HuA2-1]
Length = 247
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 146/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGIHFCGYQIQPHHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIIIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 DDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 237 GLYLWQVNYN 246
>gi|376259837|ref|YP_005146557.1| pseudouridylate synthase I [Clostridium sp. BNL1100]
gi|373943831|gb|AEY64752.1| pseudouridylate synthase I [Clostridium sp. BNL1100]
Length = 245
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/252 (38%), Positives = 145/252 (57%), Gaps = 10/252 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
K ++ I YDGT Y GWQ Q + T+Q +++KA ++KL E++ + G SRTD GVHA+G
Sbjct: 3 KIKITIEYDGTDYHGWQVQKNAKTVQEVIQKA---ISKLLGEEVGVTGCSRTDVGVHAYG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVAHF+T G + A+N LLP DI ++ EFHAR+S K K Y Y IYN
Sbjct: 60 QVAHFLTESQIPG-DKFSYAINNLLPDDIVIKHSEEVTGEFHARYSTKGKKYRYLIYNAP 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
R+ + H KLN M++A EYF+G+HDF+AF ++ + V+ ++ +V
Sbjct: 119 HPSAIMRNRSCHVRPKLNIAQMQKATEYFIGEHDFAAFQAT--GGQVRSTVREIYSMEVS 176
Query: 230 EM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E ++ +EV G+GFLY VR + L+ +G + +P ++A DR + K +A
Sbjct: 177 EKEDNMIYIEVTGNGFLYNMVRIIAGTLIYVGMGKLHESEIPSLIAGLDRTKAGK---TA 233
Query: 289 PPHGLCLVEVKY 300
P GL L+E+ Y
Sbjct: 234 PAQGLYLMEIYY 245
>gi|404493538|ref|YP_006717644.1| tRNA pseudouridine synthase A [Pelobacter carbinolicus DSM 2380]
gi|123756611|sp|Q3A3B5.1|TRUA_PELCD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|77545580|gb|ABA89142.1| tRNA pseudouridines 38,39,40 synthase [Pelobacter carbinolicus DSM
2380]
Length = 252
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 140/249 (56%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
RL+I YDGT Y GWQ Q + ++Q +VE+AL +V LV + RTD GVHA G V
Sbjct: 5 RLIIEYDGTPYVGWQRQPNGLSVQQVVEEALAKVCGGPHS---LVSSGRTDAGVHARGMV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
AHF+TP + + +N LP I VR+ + +FHAR+SA K Y Y IY V
Sbjct: 62 AHFVTPQPLP-MAAYREGVNRFLPAQIAVRDAALMPDDFHARYSAVGKWYRYSIYRSPVR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P +++H L+ MRQAA VG+HDF+AF R V+ VF D+++
Sbjct: 121 SPLACRFSWHVRTVLDLQAMRQAARLLVGRHDFAAFRASGCAAR--TTVREVFSVDIVDA 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
+ ++V GSGFL VR MV L+++G+ A PP+ V +LA RK+ ++AP
Sbjct: 179 EEWVYVDVRGSGFLRNMVRIMVGTLVEVGRGARPPEEVGAMLAGGCRKQ---SGITAPAQ 235
Query: 292 GLCLVEVKY 300
GLCL+EV Y
Sbjct: 236 GLCLMEVAY 244
>gi|229003158|ref|ZP_04161004.1| tRNA pseudouridine synthase A [Bacillus mycoides Rock1-4]
gi|228758121|gb|EEM07320.1| tRNA pseudouridine synthase A [Bacillus mycoides Rock1-4]
Length = 252
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 146/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGINFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHARGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + ++A LN +LP DI VR++ + +FHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLEEWQWMNA-LNTMLPDDIVVRQVEKKIEDFHARYGVERKEYRYRVLLSKNA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ D++E
Sbjct: 127 DVFRRNYVYQYPYPLEIESIRKAIPYFIGTHDFTSFCSTKTDKK--DKVRTIYEIDLMEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL IG+ + PD +P+IL QDR+ K P H
Sbjct: 185 DDELIFRFVGNGFLYNMVRIIVGTLLSIGQGKMVPDSIPEILKKQDRRFAGK---MVPGH 241
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 242 GLYLWQVNYN 251
>gi|421733080|ref|ZP_16172195.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|407073121|gb|EKE46119.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 247
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 139/250 (55%), Gaps = 7/250 (2%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ IAYDG + G+Q Q T+Q +EKAL + K + + ++ + RTD+ VHA GQV
Sbjct: 4 KCTIAYDGHLFNGYQVQPGKRTVQSELEKALAVIHKTDGR-VPVISSGRTDSDVHAAGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S E ALN LLP DI V+ A FHARFSA K Y Y +Y +
Sbjct: 63 IHFDTPLSIPA-EKWPFALNALLPDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTEKHP 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+RHYAYH Y+LN MR+A+ + G HDF++F + + + V++++ D E
Sbjct: 122 DVFKRHYAYHFAYQLNVQKMREASRHLTGTHDFTSFCAA--DTAVQDKVRTIYELDWTET 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G LQ+ + G+GFLY VR + LL G PD V +L +DR+ + +AP H
Sbjct: 180 GDGLQMRITGNGFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGR---TAPGH 236
Query: 292 GLCLVEVKYN 301
GL L V Y+
Sbjct: 237 GLYLWSVCYD 246
>gi|333980376|ref|YP_004518321.1| tRNA pseudouridine synthase A [Desulfotomaculum kuznetsovii DSM
6115]
gi|333823857|gb|AEG16520.1| tRNA pseudouridine synthase A [Desulfotomaculum kuznetsovii DSM
6115]
Length = 248
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 107/252 (42%), Positives = 142/252 (56%), Gaps = 11/252 (4%)
Query: 52 RLVIAYDGTRYAGWQFQ--TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+L IAYDGT Y G+Q Q T TIQ ++EK L R+ E +R++GA RTD GVHA G
Sbjct: 5 KLTIAYDGTNYHGFQEQRGTGLVTIQGVLEKCLRRLVGRE---IRVIGAGRTDAGVHARG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV +F E I ALNG+LP DI + PEFHAR+SA +K Y Y IYN
Sbjct: 62 QVVNFDACGWSIPTERIVLALNGMLPRDIAALKAEEVGPEFHARYSALAKTYRYTIYNSR 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ PF R Y++ L+ M +AA+ VG HDF++F + + V+++F DV
Sbjct: 122 IPSPFWRLYSHFVPRPLDVQAMARAAQRLVGTHDFASFQAA--GSPVKHTVRTLFSADVC 179
Query: 230 EMGA-LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
G L+ L G GFLY VR MV L+++G PD +P ILA +DR + +A
Sbjct: 180 REGKELVHLTFRGDGFLYNMVRIMVGTLIEVGLGKRDPDDIPAILAARDR---TRAGPTA 236
Query: 289 PPHGLCLVEVKY 300
PP GLCL V+Y
Sbjct: 237 PPEGLCLERVEY 248
>gi|228905939|ref|ZP_04069836.1| tRNA pseudouridine synthase A [Bacillus thuringiensis IBL 200]
gi|228853754|gb|EEM98514.1| tRNA pseudouridine synthase A [Bacillus thuringiensis IBL 200]
Length = 252
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGMHFCGYQIQPKHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + + ALN +LP DI +R + EFHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLEEWQ-WNNALNTMLPDDIVIRRVEKKTEEFHARYGVEKKEYRYRVLLSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 127 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + P+ +P+ILA Q+R+ K AP H
Sbjct: 185 DDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPNSIPEILAKQNRQFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L EV YN
Sbjct: 242 GLYLWEVNYN 251
>gi|157690932|ref|YP_001485394.1| tRNA pseudouridine synthase A [Bacillus pumilus SAFR-032]
gi|166991159|sp|A8F9B7.1|TRUA_BACP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|157679690|gb|ABV60834.1| tRNA-pseudouridine synthase I [Bacillus pumilus SAFR-032]
Length = 247
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/253 (39%), Positives = 144/253 (56%), Gaps = 7/253 (2%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
K + ++YDGT + G+Q Q T+Q +E AL ++ K + E + +V + RTD+GVHA
Sbjct: 1 MKVKCTVSYDGTHFKGYQVQPGQRTVQTEIESALAKMHK-QDELVPIVASGRTDSGVHAK 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF TP S +E ALN LLP DIRV + FHARFS SK Y YK+ +
Sbjct: 60 GQVIHFDTPLSIP-MERWPFALNSLLPDDIRVLKAEEVDESFHARFSVVSKEYRYKVSTE 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
+ F R YA H Y+L+ MR+AA Y +G HDF++F N + + V+ ++ +
Sbjct: 119 THQNVFTRQYACHFPYRLDADKMREAAGYLIGTHDFTSFCAA--NTEVQDKVREIYTLEW 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ L++ V G+GFLY VR + LL++G PD + +LA ++R+ K +A
Sbjct: 177 KNVSDGLEMRVRGNGFLYNMVRIIAGTLLEVGSGKFHPDEIKAMLAARNREAAGK---TA 233
Query: 289 PPHGLCLVEVKYN 301
P HGL L EV Y+
Sbjct: 234 PSHGLYLWEVFYD 246
>gi|386813930|ref|ZP_10101154.1| tRNA pseudouridine synthase [planctomycete KSU-1]
gi|386403427|dbj|GAB64035.1| tRNA pseudouridine synthase [planctomycete KSU-1]
Length = 246
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 149/251 (59%), Gaps = 9/251 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+I YDGT YAGWQ+Q + TIQ + A+ + + E ++L GASRTD GVHA+GQV
Sbjct: 5 QLLIEYDGTHYAGWQWQKNEKTIQETLTGAIEQAIQ---EQIKLYGASRTDAGVHAFGQV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F T S E + A+N LP DI V++++ FHA++ AKSKIY Y ++ND +
Sbjct: 62 ANFKT-ISDIPPERLLLAINFYLPCDITVKKVTDVPESFHAQYGAKSKIYQYTLFNDWIR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
R++ Y + ++ + AA + +G HDF++F R ++ + ++++ DV +
Sbjct: 121 TSLNRYFCYLYGFHMDMNKIVTAARHLIGTHDFTSFTTKARYEK--DRIRTIKSLDVKKE 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G + +E GFLY VR +V L++IG+ I + + IL ++RK +AP
Sbjct: 179 GKYIYFTIEADGFLYNMVRTIVGTLIEIGRGKIMVESIKDILDAKNRKAAGP---TAPAK 235
Query: 292 GLCLVEVKYNE 302
GLCL+EVKY++
Sbjct: 236 GLCLMEVKYDD 246
>gi|295109363|emb|CBL23316.1| pseudouridylate synthase I [Ruminococcus obeum A2-162]
Length = 246
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 141/248 (56%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
LV+AYDGT Y+GWQ Q + TIQ ++ AL + L E + ++GASRTD GVHA G VA
Sbjct: 6 LVVAYDGTNYSGWQIQPNGITIQGVLNDAL---SDLLGEKIEIMGASRTDAGVHALGNVA 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
F T G E I ALN LP DIR++ P+FH R+ K Y Y+I N
Sbjct: 63 VFDTNTRIPG-EKISYALNQRLPEDIRIQLSEEVEPDFHPRYCDSEKTYEYRILNRKFPV 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P +R Y+Y YKL+ MR+A Y +G+HDF++F ++ + V+++ DV G
Sbjct: 122 PTERLYSYFYHYKLDIEKMREATSYLIGRHDFASFCGT--GAQVKSTVRTITGIDVWRDG 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
++ + V+G GFLY VR + L+Q+G PP+ V KIL DR + +AP HG
Sbjct: 180 DIVTIRVKGEGFLYNMVRIIAGTLIQVGNGQYPPERVKKILDACDR---SVSGPTAPAHG 236
Query: 293 LCLVEVKY 300
L L+ +++
Sbjct: 237 LTLMGIEF 244
>gi|260662783|ref|ZP_05863677.1| tRNA pseudouridine synthase A [Lactobacillus fermentum 28-3-CHN]
gi|260552864|gb|EEX25863.1| tRNA pseudouridine synthase A [Lactobacillus fermentum 28-3-CHN]
Length = 258
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/260 (39%), Positives = 153/260 (58%), Gaps = 20/260 (7%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ AYDG+ +AG+Q Q T+Q +E+A+ ++ K + L + G+ RTD GVHA G
Sbjct: 3 RYKITFAYDGSNFAGFQVQPGERTVQQALERAVNKIAKKPQPPLMVFGSGRTDAGVHALG 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVAHF P+ G S+ ALN LP D+ V+E + P+FHARF A K Y Y++
Sbjct: 63 QVAHFDLPYQIPG-PSLVRALNSSLPLDVLVKEATEVAPDFHARFDAHHKRYRYRVVGGE 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--------NVQRNDRLLNPVK 221
+PF+R+Y H Y ++ M+ AA+ FVG+HDF++FV NV+R D +
Sbjct: 122 FTNPFKRNYTGHYKYPVDVERMQTAAQDFVGEHDFTSFVASGSQATSNVRRIDEV----- 176
Query: 222 SVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKEL 281
+V R E + + G+GFLY QVR MVA LL+IG P D V +++ ++R +L
Sbjct: 177 TVVR---DEENDEVVFDFVGNGFLYNQVRIMVAFLLEIGNGRRPVDDVMRVMKAKNR-DL 232
Query: 282 AKYALSAPPHGLCLVEVKYN 301
A+ +AP GL LVEV Y+
Sbjct: 233 AR--GTAPASGLYLVEVTYD 250
>gi|394994819|ref|ZP_10387526.1| tRNA pseudouridine synthase A [Bacillus sp. 916]
gi|393804386|gb|EJD65798.1| tRNA pseudouridine synthase A [Bacillus sp. 916]
Length = 247
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 101/250 (40%), Positives = 139/250 (55%), Gaps = 7/250 (2%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ IAYDG + G+Q Q T+Q +EKAL + K + + + + RTD+ VHA GQV
Sbjct: 4 KCTIAYDGHLFNGYQVQPGKRTVQSELEKALAVIHKTDGR-VPVYSSGRTDSDVHAAGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S E ALN LLP DI V+ A FHARFSA K Y Y +Y +
Sbjct: 63 IHFDTPLSIPA-EKWPFALNALLPDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTEKHP 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+RHYAYH Y+LN MR+A+ + VG HDF++F + + + V++++ D E
Sbjct: 122 DVFKRHYAYHFAYQLNVQKMREASRHLVGTHDFTSFCAA--DTAVQDKVRTIYELDWTET 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G LQ+ + G+GFLY VR + LL G PD V +L +DR+ + +AP H
Sbjct: 180 GDGLQMRITGNGFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGR---TAPGH 236
Query: 292 GLCLVEVKYN 301
GL L V Y+
Sbjct: 237 GLYLWSVCYD 246
>gi|229015543|ref|ZP_04172540.1| tRNA pseudouridine synthase A [Bacillus cereus AH1273]
gi|229021754|ref|ZP_04178334.1| tRNA pseudouridine synthase A [Bacillus cereus AH1272]
gi|228739541|gb|EEL89957.1| tRNA pseudouridine synthase A [Bacillus cereus AH1272]
gi|228745766|gb|EEL95771.1| tRNA pseudouridine synthase A [Bacillus cereus AH1273]
Length = 252
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLAEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 127 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 185 DDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 242 GLYLWQVNYN 251
>gi|227543592|ref|ZP_03973641.1| tRNA pseudouridine synthase A [Lactobacillus reuteri CF48-3A]
gi|338202916|ref|YP_004649061.1| tRNA pseudouridine synthase A [Lactobacillus reuteri SD2112]
gi|227186432|gb|EEI66503.1| tRNA pseudouridine synthase A [Lactobacillus reuteri CF48-3A]
gi|336448156|gb|AEI56771.1| tRNA pseudouridine synthase A [Lactobacillus reuteri SD2112]
Length = 256
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 99/261 (37%), Positives = 152/261 (58%), Gaps = 14/261 (5%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+++++ AYDGT ++G+Q Q + T++ ++ A+ ++ K + ++G+ RTD GVHA
Sbjct: 2 YRYKITFAYDGTNFSGFQIQPNKRTVEQTLKNAVNKIAKHPNPAIPVIGSGRTDAGVHAL 61
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
QVAHF P+ ES+ ALN +LP DI +++ +FHAR+SA K Y Y++
Sbjct: 62 NQVAHFDIPYHLSN-ESMRKALNSILPLDILIKKAELVDNDFHARYSAHRKTYRYRVDQG 120
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV----NVQRNDRLLNPVKSVF 224
++PF+R+Y H Y LN MR+AA VG HDF++FV + N R + +
Sbjct: 121 EFVNPFKRNYTSHFKYPLNLEKMRKAANDLVGTHDFTSFVASGSQAKSNVRTIESI--TI 178
Query: 225 RFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
+ D E+ + + G+GFLY QVR MVA LL+IG P D V ++L +DR LA+
Sbjct: 179 KRD--ELRNEVVFDFTGNGFLYNQVRIMVAFLLEIGSNQRPVDDVSRVLEAKDRT-LAR- 234
Query: 285 ALSAPPHGLCLVEVKY--NEE 303
++AP GL LV V Y N+E
Sbjct: 235 -MTAPASGLYLVNVDYGTNDE 254
>gi|366163712|ref|ZP_09463467.1| tRNA pseudouridine synthase A [Acetivibrio cellulolyticus CD2]
Length = 260
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 102/256 (39%), Positives = 142/256 (55%), Gaps = 23/256 (8%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+I YDGT Y GWQ Q++ T+Q VEKA+ +T E + + G+SRTD GVHA+GQV
Sbjct: 20 KLIIEYDGTNYHGWQSQSNAKTVQETVEKAIYGLTG---EVININGSSRTDQGVHAYGQV 76
Query: 112 AHFITP-------FSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYK 164
A+F T FSY ALN +LP DI +R+ +FHAR+ AK K Y Y
Sbjct: 77 ANFFTKSNIPHDRFSY--------ALNRMLPEDIIIRKSEEVSMDFHARYCAKGKKYRYL 128
Query: 165 IYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF 224
IYN + R+ +YH + L+ M++A +F G HDFSAF + V+++F
Sbjct: 129 IYNSSFPSAIFRNRSYHVSHNLDMDSMKKAIPFFKGTHDFSAFKAT--GSSVKTSVRTIF 186
Query: 225 RFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
++ + EV G GFLY VR MV L+ +G I + +P I+ + DRK +
Sbjct: 187 DVNLSRAEDNIWFEVSGDGFLYNMVRIMVGTLVDVGMGRIKAEEIPGIIESCDRKRAGR- 245
Query: 285 ALSAPPHGLCLVEVKY 300
+APP GL LVEV Y
Sbjct: 246 --TAPPQGLYLVEVYY 259
>gi|308172039|ref|YP_003918744.1| pseudouridylate synthase I [Bacillus amyloliquefaciens DSM 7]
gi|384157761|ref|YP_005539834.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens TA208]
gi|384162549|ref|YP_005543928.1| pseudouridylate synthase I [Bacillus amyloliquefaciens LL3]
gi|384166770|ref|YP_005548148.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens XH7]
gi|307604903|emb|CBI41274.1| pseudouridylate synthase I [Bacillus amyloliquefaciens DSM 7]
gi|328551849|gb|AEB22341.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens TA208]
gi|328910104|gb|AEB61700.1| pseudouridylate synthase I [Bacillus amyloliquefaciens LL3]
gi|341826049|gb|AEK87300.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens XH7]
Length = 247
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 100/253 (39%), Positives = 141/253 (55%), Gaps = 7/253 (2%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+ + IAYDG + G+Q Q T+Q +EKAL + K + + + + RTD+ VHA
Sbjct: 1 MRMKCTIAYDGHLFNGYQVQPGKRTVQSELEKALAVIHKTDGR-VPVYSSGRTDSDVHAA 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF TP S E ALN LLP DI V+ A FHARFSA K Y Y +Y +
Sbjct: 60 GQVIHFDTPLSIPA-EKWPFALNALLPDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTE 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
D F+RHYAYH Y+LN MR+A+ + +G HDF++F V + + + V++++ +
Sbjct: 119 KHPDVFKRHYAYHFAYQLNVQKMREASRHLIGTHDFTSFCAV--DTAVQDKVRTIYELEW 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E G LQ+ + G+GFLY VR + LL G PD V +L +DR+ + +A
Sbjct: 177 TETGDGLQMRITGNGFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGR---TA 233
Query: 289 PPHGLCLVEVKYN 301
P HGL L V Y+
Sbjct: 234 PGHGLYLWSVCYD 246
>gi|196041154|ref|ZP_03108450.1| tRNA pseudouridine synthase A [Bacillus cereus NVH0597-99]
gi|196028089|gb|EDX66700.1| tRNA pseudouridine synthase A [Bacillus cereus NVH0597-99]
Length = 252
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI + ++ EFHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLEEWQWSNA-LNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLVSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 127 DVFRRNYVYQYPYSLEVNSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 185 DDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 242 GLYLWQVNYN 251
>gi|28211488|ref|NP_782432.1| tRNA pseudouridine synthase A [Clostridium tetani E88]
gi|42559805|sp|Q893H3.1|TRUA1_CLOTE RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 1; AltName: Full=tRNA-uridine
isomerase I 1
gi|28203929|gb|AAO36369.1| tRNA pseudouridine synthase A [Clostridium tetani E88]
Length = 245
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 92/250 (36%), Positives = 144/250 (57%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
++++ YDGTRY GWQ Q TIQ +E L +K+ ED++++G RTD GVHA
Sbjct: 5 KMILEYDGTRYKGWQKQKKDVLTIQDKIETVL---SKMTGEDIQVIGCGRTDAGVHAENY 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T + ++ + L LP DI V+ + FHAR++ KSK Y Y+I N+
Sbjct: 62 VANFHTNCDF-TVDYMLDYLYEFLPEDIVVKTMKDTSERFHARYNVKSKTYVYRINNNKF 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
F + YAYH KLN + M+ AAE+ +G HDF +F ++ N + + ++++ ++ E
Sbjct: 121 RSVFNKKYAYHDNEKLNISAMKDAAEFLIGTHDFKSFTRLKSNSK--STIRAIKYINITE 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
++ +EV G+GFL VR + LL++GKE I P + K+L + R A +L P
Sbjct: 179 NQGIISIEVNGNGFLLNMVRIVAGALLEVGKENIKPIDIEKMLNEKKR---ADASLILPA 235
Query: 291 HGLCLVEVKY 300
GLCL +++Y
Sbjct: 236 KGLCLKDIQY 245
>gi|423393405|ref|ZP_17370631.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG1X1-3]
gi|423421692|ref|ZP_17398781.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG3X2-1]
gi|401096811|gb|EJQ04848.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG3X2-1]
gi|401629512|gb|EJS47325.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG1X1-3]
Length = 247
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLAEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 DDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 237 GLYLWQVNYN 246
>gi|229053988|ref|ZP_04195422.1| tRNA pseudouridine synthase A [Bacillus cereus AH603]
gi|228721406|gb|EEL72927.1| tRNA pseudouridine synthase A [Bacillus cereus AH603]
Length = 252
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGIHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLEEWQWSNA-LNTMLPDDIIIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ +IE
Sbjct: 127 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIGLIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 185 DDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 242 GLYLWQVNYN 251
>gi|15836112|ref|NP_300636.1| tRNA pseudouridine synthase A [Chlamydophila pneumoniae J138]
gi|16752458|ref|NP_444720.1| tRNA pseudouridine synthase A [Chlamydophila pneumoniae AR39]
gi|12644497|sp|Q9Z7X4.2|TRUA_CHLPN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|7189101|gb|AAF38045.1| tRNA pseudouridine synthase A [Chlamydophila pneumoniae AR39]
gi|8978952|dbj|BAA98787.1| pseudouridylate synthase I [Chlamydophila pneumoniae J138]
Length = 267
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 98/257 (38%), Positives = 150/257 (58%), Gaps = 14/257 (5%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
K L+IAY GT Y+GWQ Q + +IQ ++E +L ++TK L+ + RTD GVHA+G
Sbjct: 3 KVALLIAYQGTAYSGWQQQPNDLSIQEVIESSLKKITKTRTP---LIASGRTDAGVHAYG 59
Query: 110 QVAHFITP----FSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKI 165
QVAHF P F+ L ALN +LP DI +R+++ FHAR+ +K Y Y +
Sbjct: 60 QVAHFRAPDHPLFANANLTK--KALNAILPKDIVIRDVALFDDNFHARYLTIAKEYRYSL 117
Query: 166 YNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFR 225
A P+QRH+ Y + +T LM++ A +G HDF++F N R+ + V++++
Sbjct: 118 SRLAKPLPWQRHFCYTPRHPFSTELMQEGANLLIGTHDFASFANHGRDYN--STVRTIYT 175
Query: 226 FDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
D+++ G L + G+GFLY+ VRN+V LL +GK A PP+ + IL ++R+E
Sbjct: 176 LDIVDKGDSLSIICRGNGFLYKMVRNLVGALLDVGKGAYPPEHLLDILEQKNRREGPS-- 233
Query: 286 LSAPPHGLCLVEVKYNE 302
+AP +GL L V Y+
Sbjct: 234 -AAPAYGLSLHHVCYSS 249
>gi|148544665|ref|YP_001272035.1| tRNA pseudouridine synthase A [Lactobacillus reuteri DSM 20016]
gi|184154018|ref|YP_001842359.1| tRNA pseudouridine synthase A [Lactobacillus reuteri JCM 1112]
gi|194466922|ref|ZP_03072909.1| tRNA pseudouridine synthase A [Lactobacillus reuteri 100-23]
gi|227363788|ref|ZP_03847895.1| tRNA pseudouridine synthase A [Lactobacillus reuteri MM2-3]
gi|325682999|ref|ZP_08162515.1| tRNA pseudouridine synthase A [Lactobacillus reuteri MM4-1A]
gi|166991164|sp|A5VLH4.1|TRUA_LACRD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|229557996|sp|B2G8U7.1|TRUA_LACRJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|148531699|gb|ABQ83698.1| tRNA pseudouridine synthase A [Lactobacillus reuteri DSM 20016]
gi|183225362|dbj|BAG25879.1| tRNA pseudouridine synthase A [Lactobacillus reuteri JCM 1112]
gi|194453958|gb|EDX42855.1| tRNA pseudouridine synthase A [Lactobacillus reuteri 100-23]
gi|227071145|gb|EEI09461.1| tRNA pseudouridine synthase A [Lactobacillus reuteri MM2-3]
gi|324977349|gb|EGC14300.1| tRNA pseudouridine synthase A [Lactobacillus reuteri MM4-1A]
Length = 256
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 99/261 (37%), Positives = 153/261 (58%), Gaps = 14/261 (5%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+++++ AYDGT ++G+Q Q + T++ ++ A+ ++ K + ++G+ RTD GVHA
Sbjct: 2 YRYKITFAYDGTNFSGFQIQPNKRTVEQTLKNAVNKIAKHPTPAIPVIGSGRTDAGVHAL 61
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
QVAHF P+ ES+ ALN +LP DI +++ +FHAR+SA K Y Y++
Sbjct: 62 NQVAHFDIPYHLSN-ESMRKALNSILPLDILIKKAELVDNDFHARYSAHRKTYRYRVDQG 120
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV----NVQRNDRLLNPVKSVF 224
++PF+R+Y H Y LN MR+AA+ VG HDF++FV + N R + +
Sbjct: 121 EFVNPFKRNYTSHFKYPLNLEKMRKAADDLVGTHDFTSFVASGSQAKSNVRTIENI--TI 178
Query: 225 RFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
+ D E+ + + G+GFLY QVR MVA LL+IG P D V ++L +DR LA+
Sbjct: 179 KRD--EVRNEVVFDFTGNGFLYNQVRIMVAFLLEIGSNQRPVDDVSRVLKAKDR-TLAR- 234
Query: 285 ALSAPPHGLCLVEVKY--NEE 303
++AP GL LV V Y N+E
Sbjct: 235 -MTAPASGLYLVNVDYGTNDE 254
>gi|261417639|ref|YP_003251321.1| tRNA pseudouridine synthase A [Geobacillus sp. Y412MC61]
gi|319765297|ref|YP_004130798.1| tRNA pseudouridine synthase A [Geobacillus sp. Y412MC52]
gi|261374096|gb|ACX76839.1| tRNA pseudouridine synthase A [Geobacillus sp. Y412MC61]
gi|317110163|gb|ADU92655.1| tRNA pseudouridine synthase A [Geobacillus sp. Y412MC52]
Length = 258
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 146/254 (57%), Gaps = 8/254 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +IAYDGT ++G+Q Q T+Q +E+ L R+ K + +R+ + RTD GVHA+GQV
Sbjct: 6 KCIIAYDGTHFSGYQIQPGKRTVQGELEEVLRRMHK--GKGVRVAASGRTDAGVHAYGQV 63
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF T S E ALN LP DI VR + A +FHARFSAK+K Y YK++ A
Sbjct: 64 IHFDTSLSLSS-EQWKKALNAQLPDDIVVRFVQEADADFHARFSAKAKEYRYKVWTAAER 122
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+RHY Y L+ M +A F G HDF++F + + + + V++++R V
Sbjct: 123 DVFRRHYCAWHPYPLHMDAMNEALRLFCGTHDFTSFCSAKTT--IEDRVRTIYRAKVKVD 180
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G +L+ GSGFLY VR MV +L+IG+ P + +LA +DR+ LA +AP
Sbjct: 181 GPMLEFRFVGSGFLYNMVRIMVGTVLEIGQGKRSPADISTLLAAKDRR-LA--GPTAPAE 237
Query: 292 GLCLVEVKYNEEHL 305
GL L V Y +E L
Sbjct: 238 GLYLWRVYYGDEWL 251
>gi|228989350|ref|ZP_04149341.1| tRNA pseudouridine synthase A [Bacillus pseudomycoides DSM 12442]
gi|228995533|ref|ZP_04155201.1| tRNA pseudouridine synthase A [Bacillus mycoides Rock3-17]
gi|228764262|gb|EEM13141.1| tRNA pseudouridine synthase A [Bacillus mycoides Rock3-17]
gi|228770428|gb|EEM19001.1| tRNA pseudouridine synthase A [Bacillus pseudomycoides DSM 12442]
Length = 252
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGINFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHARGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + ++A LN +LP DI VR++ +FHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLEEWQWMNA-LNTMLPDDIVVRQVEKKTEDFHARYGVERKEYRYRVLLSKNA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ D++E
Sbjct: 127 DVFRRNYVYQYPYPLEIESIRKAIPYFIGTHDFTSFCSTKTDKK--DKVRTIYEIDLMEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL IG+ + PD +P+IL QDR+ K P H
Sbjct: 185 DDELIFRFVGNGFLYNMVRIIVGTLLSIGQGKMVPDSIPEILKKQDRRFAGK---MVPGH 241
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 242 GLYLWQVNYN 251
>gi|358065618|ref|ZP_09152154.1| hypothetical protein HMPREF9473_04217 [Clostridium hathewayi
WAL-18680]
gi|356696104|gb|EHI57727.1| hypothetical protein HMPREF9473_04217 [Clostridium hathewayi
WAL-18680]
Length = 496
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 146/252 (57%), Gaps = 9/252 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
R+V+AYDGT Y GWQ Q + TI+ ++ KAL + L RE + ++GASRTD+GVHA G V
Sbjct: 5 RMVVAYDGTNYCGWQIQPNGITIEEVLNKAL---SDLLREPVVVIGASRTDSGVHAEGNV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T E I ALN LP DIR+ + P++H R +K Y YKI N +
Sbjct: 62 AVFDTENRMPA-EKICFALNQRLPQDIRILKSEEVAPDWHPRKCNCTKTYEYKILNRKID 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P R Y++ + L+ M++AA+Y VG+HDF +F V+ + V++++ DV +
Sbjct: 121 MPTLRLYSHFCYFPLDVEKMKEAAKYLVGEHDFRSFCTVR--GQAEETVRTIYSLDVEKS 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G ++ + + GSGFLY VR + L+++G PP+ V +IL +DR+ + AL P
Sbjct: 179 GDMITIRISGSGFLYNMVRIIAGTLMKVGMGVYPPEHVEEILDARDRQAAGQTAL---PK 235
Query: 292 GLCLVEVKYNEE 303
GL L+ + Y E
Sbjct: 236 GLTLISLDYETE 247
>gi|443634957|ref|ZP_21119128.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
gi|443345148|gb|ELS59214.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
Length = 247
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 101/253 (39%), Positives = 143/253 (56%), Gaps = 7/253 (2%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+ + I+YDG + G+Q Q T+Q +EKAL + K ++ + +V + RTD+GVHA
Sbjct: 1 MRLKCTISYDGHLFNGYQVQPGKRTVQDELEKALAVLHK-SKDRIPVVSSGRTDSGVHAA 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF T S E ALN LLP DI V++ A FHARFSA K Y Y +Y +
Sbjct: 60 GQVIHFDTSLSIP-TERWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTE 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
D F+RHYAYH Y LN MR+AA++ +G HDF++F + + + V++++ D
Sbjct: 119 KHPDVFKRHYAYHFSYHLNVQNMREAAKHLIGTHDFTSFCATKTE--VQDKVRTIYELDW 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E LQ+ + GSGFLY VR + LL G I P+ V +L +DR+ + +A
Sbjct: 177 TETDDGLQMRITGSGFLYNMVRIIAGTLLDAGIGKISPEDVKSMLEAKDREAAGR---TA 233
Query: 289 PPHGLCLVEVKYN 301
P HGL L V Y+
Sbjct: 234 PGHGLYLWNVYYD 246
>gi|229107828|ref|ZP_04237464.1| tRNA pseudouridine synthase A [Bacillus cereus Rock1-15]
gi|228675677|gb|EEL30885.1| tRNA pseudouridine synthase A [Bacillus cereus Rock1-15]
Length = 252
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 146/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q + T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLEEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 127 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
+ G+GFLY VR +V LL +G+ + D +P+ILA Q+R+ K AP H
Sbjct: 185 DDEIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDSDSIPEILAKQNRQFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L EV YN
Sbjct: 242 GLYLWEVNYN 251
>gi|384917179|ref|ZP_10017310.1| tRNA pseudouridine synthase A [Methylacidiphilum fumariolicum SolV]
gi|384525438|emb|CCG93183.1| tRNA pseudouridine synthase A [Methylacidiphilum fumariolicum SolV]
Length = 257
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 148/256 (57%), Gaps = 8/256 (3%)
Query: 45 SFPGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTG 104
+ P ++++++Y GT + GWQ Q PT+Q +E+A V K+ + ++ + GASRTD G
Sbjct: 2 NLPLVGYKIILSYCGTGFHGWQKQGQLPTVQRFLEEA---VAKIWQTEIHIEGASRTDAG 58
Query: 105 VHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYK 164
VHA GQVA FI P + E + ALN LP IRV I EFHARF A SK Y Y
Sbjct: 59 VHAKGQVASFIAPRKLEA-EVLQRALNYYLPETIRVLHIRVVSKEFHARFHAISKTYQYW 117
Query: 165 IYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF 224
I+ND VMDPF A+H +L+ M +AA FVGK DF++FV+ L + +++VF
Sbjct: 118 IWNDPVMDPFYLWRAWHIPRQLDLQSMNEAATLFVGKKDFASFVS-SPGFVLKDTIRTVF 176
Query: 225 RFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
G L ++ +GFLYR VRN+V L++IG + + + I +++RK
Sbjct: 177 DCGFTVQGQLCLFTIKANGFLYRMVRNIVGALVKIGLGRLDLEKLKDIFESKNRK---LS 233
Query: 285 ALSAPPHGLCLVEVKY 300
SAPP GL L++V Y
Sbjct: 234 PASAPPWGLYLLKVDY 249
>gi|163816009|ref|ZP_02207379.1| hypothetical protein COPEUT_02189 [Coprococcus eutactus ATCC 27759]
gi|158448819|gb|EDP25814.1| tRNA pseudouridine synthase A [Coprococcus eutactus ATCC 27759]
Length = 254
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 144/249 (57%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+LV+AYDGT Y GWQ Q + T++ ++ K L ++L E+++++GASRTD+GVHA G V
Sbjct: 14 KLVVAYDGTNYCGWQVQINGITVEEVLNKTL---SELCHENIKVIGASRTDSGVHALGNV 70
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T G E ALN LP DIR++E +FH R+ K Y YKI N
Sbjct: 71 AVFDTESGIPG-EKFSFALNQRLPEDIRIQESCQVADDFHPRYCDTIKTYEYKILNRRFD 129
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P +R Y+ Y L+ M++AA VG+HDF++F + + ++ N V+++ + ++
Sbjct: 130 MPTERLYSTFVYYPLDIDKMKRAAAVLVGEHDFNSFCSTR--SQVENTVRTITDITIDKV 187
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G ++ + + G+GFLY VR +V L++IG P D + ILA +DR K A
Sbjct: 188 GDMIHIRISGNGFLYNMVRIIVGTLMKIGLGIWPEDCMESILAAKDR---TKAGPKAEAK 244
Query: 292 GLCLVEVKY 300
GL LVE+KY
Sbjct: 245 GLTLVEIKY 253
>gi|225387194|ref|ZP_03756958.1| hypothetical protein CLOSTASPAR_00946 [Clostridium asparagiforme
DSM 15981]
gi|225046673|gb|EEG56919.1| hypothetical protein CLOSTASPAR_00946 [Clostridium asparagiforme
DSM 15981]
Length = 259
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 102/258 (39%), Positives = 148/258 (57%), Gaps = 10/258 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
RLV+AYDGT Y GWQ+Q + TI+ ++ KAL T+L RE + ++GASRTD GVHA G V
Sbjct: 11 RLVVAYDGTNYHGWQYQPNAVTIEEVLNKAL---TELLREPIAVIGASRTDAGVHAQGNV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T + I A+N LP DIRV+ ++H R K Y YKI N +
Sbjct: 68 AVFDTKNRM-AADKICLAVNQRLPEDIRVQSSEEVATDWHPRKRRCVKTYEYKILNRRIE 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV-IE 230
P +R Y YH Y L+ MRQAAE+ +G+HDF +F + + ++ + V++V+ + +
Sbjct: 127 MPDKRLYTYHCYYDLDLEKMRQAAEFILGEHDFKSFCSAK--TQVTDTVRTVYDLKLERD 184
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
++ + + GSGFLY VR + LL G I P+ V +ILA +DR+ K +AP
Sbjct: 185 QEDVITIRITGSGFLYNMVRIIAGTLLWAGTGLIRPEAVGEILAAEDRR---KAGPTAPA 241
Query: 291 HGLCLVEVKYNEEHLRLP 308
GL L+ + Y +E +P
Sbjct: 242 KGLTLIRMHYPDETAEMP 259
>gi|206978041|ref|ZP_03238926.1| tRNA pseudouridine synthase A [Bacillus cereus H3081.97]
gi|217957717|ref|YP_002336261.1| tRNA pseudouridine synthase A [Bacillus cereus AH187]
gi|229136988|ref|ZP_04265615.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST26]
gi|375282240|ref|YP_005102675.1| tRNA pseudouridine synthase A [Bacillus cereus NC7401]
gi|206743754|gb|EDZ55176.1| tRNA pseudouridine synthase A [Bacillus cereus H3081.97]
gi|217063029|gb|ACJ77279.1| tRNA pseudouridine synthase A [Bacillus cereus AH187]
gi|228646526|gb|EEL02733.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST26]
gi|358350763|dbj|BAL15935.1| tRNA pseudouridine synthase A [Bacillus cereus NC7401]
Length = 252
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--IRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI + ++ EFHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLEEWQWSNA-LNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLLSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 127 DVFRRNYVYQYPYPLEINAIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 185 DDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 242 GLYLWQVNYN 251
>gi|402554270|ref|YP_006595541.1| tRNA pseudouridine synthase A [Bacillus cereus FRI-35]
gi|401795480|gb|AFQ09339.1| tRNA pseudouridine synthase A [Bacillus cereus FRI-35]
Length = 252
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + + ALN +LP DI + ++ EFHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLEEWQ-WNNALNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLLSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 127 DVFRRNYVYQYPYPLEINAIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 185 DDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 242 GLYLWQVNYN 251
>gi|423370724|ref|ZP_17348129.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD142]
gi|401073460|gb|EJP81882.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD142]
Length = 247
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 146/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGIHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIIIRQVEKKTEEFHARYGVEKKEYRYRVLLSKPA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 DDELIFRFVGNGFLYNMVRIIVGTLLSVGQGRLDPDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 237 GLYLWQVNYN 246
>gi|289579109|ref|YP_003477736.1| tRNA pseudouridine synthase A [Thermoanaerobacter italicus Ab9]
gi|289528822|gb|ADD03174.1| tRNA pseudouridine synthase A [Thermoanaerobacter italicus Ab9]
Length = 240
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 142/248 (57%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
+V+ YDGT Y GWQ Q + T+Q +++KA+ +VT E++ L+GASRTDTGVHA QVA
Sbjct: 2 IVVQYDGTNYHGWQLQKNAITVQEVLQKAIKKVTG---EEVNLIGASRTDTGVHALYQVA 58
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T E + ALN +LP DI + + FHAR+SAK K Y Y I N
Sbjct: 59 NFKTNTKMPA-EKLPYALNSVLPDDIVITQAKDVEDSFHARYSAKRKRYKYIILNRKFRM 117
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P R+Y +H Y LN M++AA Y +G HDFSAF + +++V+ + +
Sbjct: 118 PTMRNYCWHISYPLNVEKMKKAATYLIGTHDFSAF--KASGSSKTSTIRTVYDLIIEKNE 175
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ +E+E GFLY VR +V L +G I + V ILA++DR K ++APP G
Sbjct: 176 DFINIEIEADGFLYNMVRIIVGTLSYVGLGKIGENEVYHILASKDR---TKAGITAPPQG 232
Query: 293 LCLVEVKY 300
L L+++ Y
Sbjct: 233 LYLIKIIY 240
>gi|228983397|ref|ZP_04143610.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228776387|gb|EEM24740.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 252
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI + ++ EFHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLEEWQWSNA-LNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLLSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 127 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL IG+ + PD +P+ILA Q+R+ K AP H
Sbjct: 185 DDELIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 242 GLYLWQVNYN 251
>gi|194017442|ref|ZP_03056053.1| tRNA pseudouridine synthase A [Bacillus pumilus ATCC 7061]
gi|194010714|gb|EDW20285.1| tRNA pseudouridine synthase A [Bacillus pumilus ATCC 7061]
Length = 247
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 99/253 (39%), Positives = 144/253 (56%), Gaps = 7/253 (2%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
K + ++YDGT + G+Q Q T+Q +E AL R+ K + E + +V + RTD+GVHA
Sbjct: 1 MKVKCTVSYDGTHFKGYQVQPGQRTVQTEIESALARMHK-QDELIPIVASGRTDSGVHAK 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF TP S +E ALN LLP DIRV + FHARFS SK Y YK+ +
Sbjct: 60 GQVIHFDTPLSIP-MERWPFALNSLLPDDIRVLKAEEVDESFHARFSVVSKEYRYKVSTE 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
+ F R YA H Y+L+ MR+AA + +G HDF++F N + + V+ ++ +
Sbjct: 119 THQNVFTRQYACHFPYRLDADKMREAAGHLIGTHDFTSFCAA--NTEVQDKVREIYTLEW 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ L++ V G+GFLY VR + LL+IG P+ + +LA ++R+ K +A
Sbjct: 177 KNVSDGLEMRVRGNGFLYNMVRIIAGTLLEIGSGKFHPEEIKAMLAARNREAAGK---TA 233
Query: 289 PPHGLCLVEVKYN 301
P HGL L EV Y+
Sbjct: 234 PSHGLYLWEVFYD 246
>gi|42779223|ref|NP_976470.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10987]
gi|51316699|sp|Q73F64.1|TRUA1_BACC1 RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 1; AltName: Full=tRNA-uridine
isomerase I 1
gi|42735138|gb|AAS39078.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10987]
Length = 247
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + + ALN +LP DI + ++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQ-WNNALNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEINAIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 DDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 237 GLYLWQVNYN 246
>gi|229153920|ref|ZP_04282050.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 4342]
gi|228629601|gb|EEK86298.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 4342]
Length = 252
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGIHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI + ++ EFHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLEEWQWSNA-LNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLLSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 127 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL IG+ + PD +P+ILA Q+R+ K AP H
Sbjct: 185 DDELIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 242 GLYLWQVNYN 251
>gi|238925343|ref|YP_002938860.1| tRNA pseudouridine synthase A [Eubacterium rectale ATCC 33656]
gi|238877019|gb|ACR76726.1| tRNA pseudouridine synthase A [Eubacterium rectale ATCC 33656]
Length = 252
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 95/252 (37%), Positives = 143/252 (56%), Gaps = 9/252 (3%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+ ++++AYDGT Y GWQ Q + TI+ ++ + L R+ K ED+++ GASRTD GVH+
Sbjct: 9 MRVKMIVAYDGTNYCGWQIQPNGITIEQVLNEHLSRLLK---EDIKVTGASRTDAGVHSL 65
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
G V F T E I ALN LP DI V + +FH RFS K Y Y+I N
Sbjct: 66 GNVCMFDTNTRMPA-EKISYALNQKLPEDIVVVDSCEVSDDFHPRFSKSRKTYEYRILNA 124
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
+P +R Y Y L+T M +AA+Y +G+HDF++F + N + V++++ V
Sbjct: 125 RFRNPTRRLDTYFYHYPLDTEKMSEAAKYLIGEHDFASFCSA--NSQAQTTVRTIYDCTV 182
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ G ++ + V G+GFLY VR + L++IG +P D + I+AT DR A +A
Sbjct: 183 SKAGDIITIRVTGNGFLYNMVRIIAGTLVKIGGSDMPADAMKDIIATTDR---AAAGPTA 239
Query: 289 PPHGLCLVEVKY 300
P HGL ++ +KY
Sbjct: 240 PAHGLTMIGLKY 251
>gi|118475910|ref|YP_893061.1| tRNA pseudouridine synthase A [Bacillus thuringiensis str. Al
Hakam]
gi|118415135|gb|ABK83554.1| tRNA pseudouridine synthase A [Bacillus thuringiensis str. Al
Hakam]
Length = 264
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 22 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 79
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI + ++ EFHAR+ + K Y Y++
Sbjct: 80 IHFDTPLSLEEWQWSNA-LNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLVSKTA 138
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 139 DVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 196
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 197 DDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 253
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 254 GLYLWQVNYN 263
>gi|300119545|ref|ZP_07057089.1| tRNA pseudouridine synthase A [Bacillus cereus SJ1]
gi|298723017|gb|EFI63915.1| tRNA pseudouridine synthase A [Bacillus cereus SJ1]
Length = 252
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI + ++ EFHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLEEWQWSNA-LNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLVSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 127 DVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 185 DDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 242 GLYLWQVNYN 251
>gi|47570254|ref|ZP_00240905.1| tRNA pseudouridine synthase A [Bacillus cereus G9241]
gi|47553078|gb|EAL11478.1| tRNA pseudouridine synthase A [Bacillus cereus G9241]
Length = 247
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI + ++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL IG+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 DDELIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 237 GLYLWQVNYN 246
>gi|89100313|ref|ZP_01173178.1| pseudouridylate synthase I [Bacillus sp. NRRL B-14911]
gi|89084934|gb|EAR64070.1| pseudouridylate synthase I [Bacillus sp. NRRL B-14911]
Length = 245
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/251 (39%), Positives = 143/251 (56%), Gaps = 8/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ IAYDG++++G+Q Q T+Q VE+AL ++ K +++ + RTD GVHA G
Sbjct: 3 RFKCKIAYDGSQFSGYQVQPGKRTVQLEVERALAKIHK--GNPVKIFASGRTDAGVHARG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF +P + + ALN LLP DI V A FHARF A K Y Y IY
Sbjct: 61 QVIHFDSPLAIPEDRWV-TALNSLLPKDIAVESTEKAAEGFHARFDACGKEYRYFIYRGK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ PF+RHY+YH + L+ MR+AAE+ +G HDFS+F R D + + V+ + + V
Sbjct: 120 IRSPFERHYSYHYPHPLDIRAMREAAEHLLGTHDFSSFC-ASRTD-VEDKVREIRKVHVE 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E G +L+L GSGFLY VR + LL+ G P P++++ +DR K +AP
Sbjct: 178 EAGEMLELHFTGSGFLYNMVRILTGTLLEAGAGTRDPGSFPEVISGRDRSLAGK---TAP 234
Query: 290 PHGLCLVEVKY 300
GL L +V Y
Sbjct: 235 AEGLYLWKVFY 245
>gi|423357567|ref|ZP_17335162.1| tRNA pseudouridine synthase A 1 [Bacillus cereus IS075]
gi|423376266|ref|ZP_17353580.1| tRNA pseudouridine synthase A 1 [Bacillus cereus AND1407]
gi|423572574|ref|ZP_17548753.1| tRNA pseudouridine synthase A 1 [Bacillus cereus MSX-A12]
gi|401074433|gb|EJP82833.1| tRNA pseudouridine synthase A 1 [Bacillus cereus IS075]
gi|401088723|gb|EJP96905.1| tRNA pseudouridine synthase A 1 [Bacillus cereus AND1407]
gi|401195972|gb|EJR02920.1| tRNA pseudouridine synthase A 1 [Bacillus cereus MSX-A12]
Length = 247
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--IRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI + ++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEINAIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 DDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 237 GLYLWQVNYN 246
>gi|452854208|ref|YP_007495891.1| pseudouridylate synthase I [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|452078468|emb|CCP20218.1| pseudouridylate synthase I [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 247
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/250 (40%), Positives = 138/250 (55%), Gaps = 7/250 (2%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ IAYDG + G+Q Q T+Q +EKAL + K + + + + RTD+ VHA GQV
Sbjct: 4 KCTIAYDGHLFNGYQVQPGKRTVQSELEKALAVIHKTDGR-VPVYSSGRTDSDVHAAGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S E ALN LLP DI V+ A FHARFSA K Y Y +Y +
Sbjct: 63 IHFDTPLSIPA-EKWPFALNALLPDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTEKHP 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+RHYAYH Y LN MR+A+ + VG HDF++F + + + V++++ D E
Sbjct: 122 DVFKRHYAYHFAYPLNVQKMREASRHLVGTHDFTSFCAA--DTAVQDKVRTIYELDWTET 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G LQ+ + G+GFLY VR + LL G PD V +L +DR+ + +AP H
Sbjct: 180 GDGLQMRITGNGFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGR---TAPGH 236
Query: 292 GLCLVEVKYN 301
GL L V Y+
Sbjct: 237 GLYLWSVCYD 246
>gi|339634773|ref|YP_004726414.1| tRNA pseudouridine synthase A [Weissella koreensis KACC 15510]
gi|420160761|ref|ZP_14667533.1| pseudouridylate synthase [Weissella koreensis KCTC 3621]
gi|338854569|gb|AEJ23735.1| tRNA pseudouridine synthase A [Weissella koreensis KACC 15510]
gi|394746053|gb|EJF34858.1| pseudouridylate synthase [Weissella koreensis KCTC 3621]
Length = 249
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 153/253 (60%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++R ++AYDGT ++GWQ Q S T+Q +EKA+ R+ K + +R+ G+ RTD GVHA G
Sbjct: 3 RYRAIVAYDGTDFSGWQVQPSKRTVQGELEKAVNRMAKNPEQPIRVQGSGRTDAGVHALG 62
Query: 110 QVAHFITPFSYDGLES-IHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
QVAHF PF D ES + L +LP DI ++++ +FHA++SA +K Y Y++ N
Sbjct: 63 QVAHFDLPF--DIPESGVRKGLATMLPFDIEIKKVEKVDADFHAQYSAHTKTYQYRLSNR 120
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQ-RNDRLLNPVKSVFRFD 227
A DPF+R+Y + +++ + + A ++G+HD+ +F + + V +V +
Sbjct: 121 AFRDPFKRNYTGYWPRRIDPSKIEMAINDYLGEHDWQSFAASGFQAKTTIRTVTAVKFMN 180
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+E L+ E G+GFLY Q+R MV +LL+IG + P D +P++LA +DR++ L+
Sbjct: 181 DVEHEELI-FEFTGTGFLYNQIRIMVGVLLEIGGGSRPVDDIPRLLAQKDRQQA---RLT 236
Query: 288 APPHGLCLVEVKY 300
AP GL L V Y
Sbjct: 237 APASGLYLKSVDY 249
>gi|65317587|ref|ZP_00390546.1| COG0101: Pseudouridylate synthase [Bacillus anthracis str. A2012]
gi|376264171|ref|YP_005116883.1| tRNA pseudouridine synthase A [Bacillus cereus F837/76]
gi|386734008|ref|YP_006207189.1| tRNA pseudouridine synthase A 1 [Bacillus anthracis str. H9401]
gi|364509971|gb|AEW53370.1| tRNA pseudouridine synthase A [Bacillus cereus F837/76]
gi|384383860|gb|AFH81521.1| tRNA pseudouridine synthase A 1 [Bacillus anthracis str. H9401]
Length = 257
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 15 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 72
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI + ++ EFHAR+ + K Y Y++
Sbjct: 73 IHFDTPLSLEEWQWSNA-LNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLVSKTA 131
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 132 DVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 189
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 190 DDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 246
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 247 GLYLWQVNYN 256
>gi|433461721|ref|ZP_20419324.1| tRNA pseudouridine synthase A [Halobacillus sp. BAB-2008]
gi|432189736|gb|ELK46813.1| tRNA pseudouridine synthase A [Halobacillus sp. BAB-2008]
Length = 247
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/253 (39%), Positives = 145/253 (57%), Gaps = 9/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ + + YDGT YAG+Q Q + TIQ +EKAL ++ K E +++ + RTD GVHA G
Sbjct: 3 RMKFTLQYDGTAYAGYQVQPNGNTIQAELEKALAKIHK--GETVKVTASGRTDAGVHAMG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPE-FHARFSAKSKIYHYKIYND 168
QV HF TP S E+ A+N LLP DI + S AVPE FHAR+ K Y Y ++ND
Sbjct: 61 QVIHFDTPLSIPD-ENWKRAVNSLLPDDIMITH-SEAVPEDFHARYGTVGKEYRYYVWND 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
F+RH+ YH +L+ M++A G+HDF++F + + D + V++++ +
Sbjct: 119 RDRQLFKRHHTYHVKAELDMAAMKEACRLLEGEHDFTSFCS-PKTDIKGDKVRTIYEASI 177
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ GA + GSGFLY VR +V LL++G+ P +P+ILA DR K +A
Sbjct: 178 RKEGAEIVFLFRGSGFLYNMVRILVGTLLEVGRHEREPASIPRILAAMDRAAAGK---TA 234
Query: 289 PPHGLCLVEVKYN 301
PP GL L EV Y
Sbjct: 235 PPQGLFLWEVFYQ 247
>gi|49183176|ref|YP_026428.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Sterne]
gi|49476722|ref|YP_034493.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52145077|ref|YP_081752.1| tRNA pseudouridine synthase A [Bacillus cereus E33L]
gi|165873347|ref|ZP_02217948.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0488]
gi|167642077|ref|ZP_02400301.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0193]
gi|196046214|ref|ZP_03113441.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB108]
gi|270000591|ref|YP_003329029.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Ames]
gi|291612229|ref|YP_003541012.1| tRNA pseudouridine synthase A [Bacillus anthracis str. 'Ames
Ancestor']
gi|423553924|ref|ZP_17530251.1| tRNA pseudouridine synthase A 1 [Bacillus cereus ISP3191]
gi|62901423|sp|Q63H59.1|TRUA1_BACCZ RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 1; AltName: Full=tRNA-uridine
isomerase I 1
gi|62901430|sp|Q6HPM7.1|TRUA1_BACHK RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 1; AltName: Full=tRNA-uridine
isomerase I 1
gi|62901432|sp|Q6I4Q2.1|TRUA1_BACAN RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 1; AltName: Full=tRNA-uridine
isomerase I 1
gi|49177103|gb|AAT52479.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Sterne]
gi|49328278|gb|AAT58924.1| tRNA pseudouridine synthase A (pseudouridylate synthase) [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|51978546|gb|AAU20096.1| tRNA-pseudouridylate synthase I [Bacillus cereus E33L]
gi|164710915|gb|EDR16491.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0488]
gi|167509964|gb|EDR85386.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0193]
gi|196022959|gb|EDX61639.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB108]
gi|224552852|gb|ACN55064.1| tRNA pseudouridine synthase A [Bacillus anthracis str. 'Ames
Ancestor']
gi|269850235|gb|ACZ49980.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Ames]
gi|401182131|gb|EJQ89270.1| tRNA pseudouridine synthase A 1 [Bacillus cereus ISP3191]
Length = 247
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI + ++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLVSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 DDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 237 GLYLWQVNYN 246
>gi|170689686|ref|ZP_02880864.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0465]
gi|177656196|ref|ZP_02937177.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0174]
gi|190567334|ref|ZP_03020248.1| tRNA pseudouridine synthase A [Bacillus anthracis str.
Tsiankovskii-I]
gi|196036037|ref|ZP_03103438.1| tRNA pseudouridine synthase A [Bacillus cereus W]
gi|218901347|ref|YP_002449181.1| tRNA pseudouridine synthase A [Bacillus cereus AH820]
gi|225862194|ref|YP_002747572.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB102]
gi|227812815|ref|YP_002812824.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CDC 684]
gi|228912881|ref|ZP_04076528.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228925395|ref|ZP_04088491.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228943947|ref|ZP_04106332.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229089273|ref|ZP_04220554.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-42]
gi|229119804|ref|ZP_04249065.1| tRNA pseudouridine synthase A [Bacillus cereus 95/8201]
gi|229182536|ref|ZP_04309787.1| tRNA pseudouridine synthase A [Bacillus cereus BGSC 6E1]
gi|229604554|ref|YP_002864793.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0248]
gi|254686641|ref|ZP_05150500.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CNEVA-9066]
gi|254726279|ref|ZP_05188061.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A1055]
gi|254735284|ref|ZP_05192992.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Western
North America USA6153]
gi|254739476|ref|ZP_05197174.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Kruger B]
gi|254755530|ref|ZP_05207564.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Vollum]
gi|301051879|ref|YP_003790090.1| tRNA pseudouridine synthase A [Bacillus cereus biovar anthracis
str. CI]
gi|421510470|ref|ZP_15957363.1| tRNA pseudouridine synthase A [Bacillus anthracis str. UR-1]
gi|421640558|ref|ZP_16081140.1| tRNA pseudouridine synthase A [Bacillus anthracis str. BF1]
gi|170666357|gb|EDT17142.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0465]
gi|172079844|gb|EDT64958.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0174]
gi|190561461|gb|EDV15432.1| tRNA pseudouridine synthase A [Bacillus anthracis str.
Tsiankovskii-I]
gi|195991406|gb|EDX55373.1| tRNA pseudouridine synthase A [Bacillus cereus W]
gi|218535501|gb|ACK87899.1| tRNA pseudouridine synthase A [Bacillus cereus AH820]
gi|225789774|gb|ACO29991.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB102]
gi|227005095|gb|ACP14838.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CDC 684]
gi|228600991|gb|EEK58560.1| tRNA pseudouridine synthase A [Bacillus cereus BGSC 6E1]
gi|228663705|gb|EEL19284.1| tRNA pseudouridine synthase A [Bacillus cereus 95/8201]
gi|228694112|gb|EEL47794.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-42]
gi|228815780|gb|EEM62016.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228834317|gb|EEM79858.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228846817|gb|EEM91822.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229268962|gb|ACQ50599.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0248]
gi|300374048|gb|ADK02952.1| tRNA pseudouridine synthase A [Bacillus cereus biovar anthracis
str. CI]
gi|401819552|gb|EJT18729.1| tRNA pseudouridine synthase A [Bacillus anthracis str. UR-1]
gi|403392374|gb|EJY89628.1| tRNA pseudouridine synthase A [Bacillus anthracis str. BF1]
Length = 252
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI + ++ EFHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLEEWQWSNA-LNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLVSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 127 DVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 185 DDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 242 GLYLWQVNYN 251
>gi|229194532|ref|ZP_04321335.1| tRNA pseudouridine synthase A [Bacillus cereus m1293]
gi|384178049|ref|YP_005563811.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|228588998|gb|EEK47013.1| tRNA pseudouridine synthase A [Bacillus cereus m1293]
gi|324324133|gb|ADY19393.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 252
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI + ++ EFHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLEEWQWSNA-LNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLLSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 127 DVFRRNYVYQYPYPLEINAIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 185 DDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 242 GLYLWQVNYN 251
>gi|442803780|ref|YP_007371929.1| tRNA pseudouridine synthase A [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442739630|gb|AGC67319.1| tRNA pseudouridine synthase A [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 266
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 148/258 (57%), Gaps = 10/258 (3%)
Query: 48 GFK-WRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVH 106
GFK +LVI YDG+ + GWQ Q + ++Q +EKA+ ++T E + + G+ RTD GVH
Sbjct: 2 GFKRIKLVIEYDGSFFHGWQVQNNQLSVQGEIEKAIFKITG---EKVSVTGSGRTDAGVH 58
Query: 107 AWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIY 166
A+GQVAHF T S E LN +LPP I V P+FHARFSA K Y YK+
Sbjct: 59 AFGQVAHFDTQ-SRIPAEKFAVVLNTVLPPSIAVISSKEVSPDFHARFSAIKKTYKYKVL 117
Query: 167 NDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRF 226
N + P A+H + L+ M +AA YF+G+HDF+AF N + N V+ ++
Sbjct: 118 NRPMRSPIMDKRAWHVPWPLDIESMNRAAAYFIGRHDFTAFCASGHN--VKNFVREIYVS 175
Query: 227 DVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
+ E V G+GFLY VR M ++++G + +P++L ++R+ LA +
Sbjct: 176 EWTEEEGCFVYTVTGNGFLYNMVRIMTGTMVEVGLNKRSAENIPELLEKKNRR-LA--GI 232
Query: 287 SAPPHGLCLVEVKYNEEH 304
+APP+GL L EV Y+EE+
Sbjct: 233 TAPPYGLYLWEVFYDEEN 250
>gi|260584448|ref|ZP_05852195.1| tRNA pseudouridine synthase A [Granulicatella elegans ATCC 700633]
gi|260157966|gb|EEW93035.1| tRNA pseudouridine synthase A [Granulicatella elegans ATCC 700633]
Length = 250
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/257 (37%), Positives = 148/257 (57%), Gaps = 8/257 (3%)
Query: 48 GFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHA 107
GF+++++++YDGT Y G+Q Q + +IQ + KAL ++TK + + G+ RTD+GVHA
Sbjct: 2 GFRYKVILSYDGTNYVGFQVQENGNSIQAELNKALRKMTKGLY--IPVCGSGRTDSGVHA 59
Query: 108 WGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
GQV HF P + E++ ALN LLP DI +++ A EFHAR+S K Y Y++
Sbjct: 60 NGQVIHFDYPTKIEE-ENLQRALNSLLPDDISAKQVMAVSDEFHARYSVTGKRYIYRVNI 118
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
++PF R Y H Y++N M +A + +G+HDF++F + + + + V+ V + +
Sbjct: 119 QKFVNPFSRLYTLHHPYRVNVDNMNEALQAVIGEHDFTSFCSTKTDKE--SKVRIVTKAE 176
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V+E L EG+GFLY +R +V LQIG P + IL DR+ K +
Sbjct: 177 VVEKDGELVFTFEGNGFLYNMIRILVGTSLQIGDGLRPVSDMRDILVAMDRQ---KAGPT 233
Query: 288 APPHGLCLVEVKYNEEH 304
APP GL L EV Y E+
Sbjct: 234 APPQGLYLDEVFYEEKE 250
>gi|384247684|gb|EIE21170.1| tRNA pseudouridine synthase A [Coccomyxa subellipsoidea C-169]
Length = 297
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 152/256 (59%), Gaps = 9/256 (3%)
Query: 51 WRLVIAYDGTRYAGWQFQ--TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
++ I+YDGT Y G+Q Q TIQ +EKAL VT+ +R +L++ + RTD GVHA
Sbjct: 45 YKATISYDGTDYNGFQLQLGVRGRTIQGELEKALTLVTQNDRAELKVTASGRTDAGVHAS 104
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV +F + + H+ +N LLPPDIRV ++ P+F+ARFSA SK Y ++I
Sbjct: 105 GQVVNFFSGKGHCPSRLWHS-MNRLLPPDIRVLDVQPVGPDFNARFSALSKEYRFQICTG 163
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
+ DPF Y+ H L+ MRQAA+ F+G HDF+ F + +NP K++ RF+V
Sbjct: 164 PLHDPFLWRYSQHVYLPLDVEAMRQAAKCFLGSHDFTQFASTYPVG--MNPRKTLTRFEV 221
Query: 229 IEMG-ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRK---ELAKY 284
+E+ L+LEV+GSGFLYR VR+MV L+++GK + + ++LA +K E +
Sbjct: 222 VEVRPGFLRLEVQGSGFLYRMVRHMVGALIEVGKGTMKEAQIEELLALGSKKFPGEKHRG 281
Query: 285 ALSAPPHGLCLVEVKY 300
A GL L EV Y
Sbjct: 282 WTVADAKGLFLHEVWY 297
>gi|222093912|ref|YP_002527962.1| tRNA pseudouridine synthase A [Bacillus cereus Q1]
gi|423578006|ref|ZP_17554125.1| tRNA pseudouridine synthase A 1 [Bacillus cereus MSX-D12]
gi|423608033|ref|ZP_17583926.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD102]
gi|221237960|gb|ACM10670.1| tRNA pseudouridine synthase A [Bacillus cereus Q1]
gi|401203586|gb|EJR10422.1| tRNA pseudouridine synthase A 1 [Bacillus cereus MSX-D12]
gi|401238716|gb|EJR45149.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD102]
Length = 247
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI + ++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEINAIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 DDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 237 GLYLWQVNYN 246
>gi|423614568|ref|ZP_17590425.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD107]
gi|401237412|gb|EJR43864.1| tRNA pseudouridine synthase A 1 [Bacillus cereus VD107]
Length = 247
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGIHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R+ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIVIRQAEKKTEEFHARYGVEKKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + ++ V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEIESIRKAIPYFIGTHDFTSFCSAKTDK--VDKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 DDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 237 GLYLWQVNYN 246
>gi|56418673|ref|YP_145991.1| tRNA pseudouridine synthase A [Geobacillus kaustophilus HTA426]
gi|62901182|sp|Q5L3Q7.1|TRUA_GEOKA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|56378515|dbj|BAD74423.1| pseudouridylate synthaseI [Geobacillus kaustophilus HTA426]
Length = 258
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 102/254 (40%), Positives = 148/254 (58%), Gaps = 8/254 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +IAYDGT ++G+Q Q T+Q E+ L R+ K + +R+ + RTD GVHA+GQV
Sbjct: 6 KCIIAYDGTHFSGYQIQPGKRTVQGEFEEVLRRMHKGTK--VRVAASGRTDAGVHAYGQV 63
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S E ALN LP DI VR + A +FHARFSAK+K Y YK++ A
Sbjct: 64 IHFDTPLSLSS-EQWKKALNAQLPDDIVVRFVQEADADFHARFSAKAKEYRYKVWTAAER 122
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+RHY Y L+ + M +A G HDF++F + + + + + V++++R +V
Sbjct: 123 DVFRRHYCAWHPYSLHISAMNEALRLLHGTHDFTSFCSAKTS--IEDRVRTMYRAEVKAD 180
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G +L+ GSGFLY VR +V +L+IG+ P + +LA +DR+ LA +AP
Sbjct: 181 GPMLEFRFVGSGFLYNMVRIIVGTVLEIGQGKRSPADISTLLAAKDRR-LA--GPTAPAE 237
Query: 292 GLCLVEVKYNEEHL 305
GL L V Y +E L
Sbjct: 238 GLYLWRVYYEDECL 251
>gi|229083462|ref|ZP_04215810.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-44]
gi|228699895|gb|EEL52532.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-44]
Length = 252
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E++R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGINFCGYQIQPQHRTVQQEIEKALQKLHK--GENVRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP + + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 68 IHFDTPLTLEEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A Y +G HDF++F + + + + + V++++ ++IE
Sbjct: 127 DVFRRNYVYQYPYPLEINSIRKAIPYLIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + D +P+ILA Q+RK K AP H
Sbjct: 185 DDELIFRFVGNGFLYNMVRIIVGTLLDVGQGKLDADSIPEILAKQNRKFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 242 GLYLWQVNYN 251
>gi|384263778|ref|YP_005419485.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387896668|ref|YP_006326964.1| pseudouridylate synthase [Bacillus amyloliquefaciens Y2]
gi|380497131|emb|CCG48169.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387170778|gb|AFJ60239.1| pseudouridylate synthase [Bacillus amyloliquefaciens Y2]
Length = 247
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 138/250 (55%), Gaps = 7/250 (2%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ IAYDG + G+Q Q T+Q +EKAL + K + + + + RTD+ VHA GQV
Sbjct: 4 KCTIAYDGHLFNGYQVQPGKRTVQSELEKALAVIHKTDGR-VPVYSSGRTDSDVHAAGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S E ALN LLP DI V+ A FHARFSA K Y Y +Y +
Sbjct: 63 IHFDTPLSIPA-EKWPFALNALLPDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTEKHP 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+RHYAYH Y LN MR+A+ + +G HDF++F + + + V++++ D E
Sbjct: 122 DVFKRHYAYHFAYPLNVQKMREASRHLIGTHDFTSFCAA--DTAVQDKVRTIYELDWTET 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G LQ+ + G+GFLY VR + LL G PD V +L +DR+ + +AP H
Sbjct: 180 GDGLQMRITGNGFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGR---TAPGH 236
Query: 292 GLCLVEVKYN 301
GL L V Y+
Sbjct: 237 GLYLWSVCYD 246
>gi|332982675|ref|YP_004464116.1| tRNA pseudouridine synthase A [Mahella australiensis 50-1 BON]
gi|332700353|gb|AEE97294.1| tRNA pseudouridine synthase A [Mahella australiensis 50-1 BON]
Length = 245
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 139/249 (55%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L + YDGT YAGWQ+Q + TIQ +VE+A + L + ++ A RTD GVHA GQV
Sbjct: 6 KLTLQYDGTAYAGWQYQKNALTIQQVVEEA---IESLTGQHSTVIAAGRTDRGVHALGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
+F T + ++A LN +LP DIRV + +P FHARF AK K+Y Y I+N
Sbjct: 63 TNFKTESNIPTDRWLYA-LNAVLPEDIRVIDAQDVLPSFHARFDAKGKLYRYIIWNAPYS 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
R+++ H L+ M++AA YFVG HDFS+F R + V++++ +
Sbjct: 122 SALLRNFSLHVARPLDADAMKRAALYFVGTHDFSSFQASGSTVR--DTVRNIWDISIQTE 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G ++ + + G GFLY VR MV L+ +G I IL +DRK K +A PH
Sbjct: 180 GKMISISISGDGFLYNMVRIMVGTLIDVGIGKITACDAKLILEARDRKRAGK---TAGPH 236
Query: 292 GLCLVEVKY 300
GL LVEV Y
Sbjct: 237 GLYLVEVYY 245
>gi|228995804|ref|ZP_04155464.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides Rock3-17]
gi|229003424|ref|ZP_04161244.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides Rock1-4]
gi|228757802|gb|EEM07027.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides Rock1-4]
gi|228763965|gb|EEM12852.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides Rock3-17]
Length = 245
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 144/251 (57%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG RY GWQ + TIQ +E L +T E + ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGGRYKGWQRLGNNDNTIQGKIESVLSEMTGRE---IEIIGCSRTDAGVHALH 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + L+ + LN LP DI + ++ FHAR+++KSK Y YKI+N+
Sbjct: 61 QVANFKIDENLPELK-VKKYLNQYLPNDISITDVELVSERFHARYNSKSKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA+Y +G HDF+AF N + + + V+ ++ DV+
Sbjct: 120 HTNPFMRKYSMHVGKKLNIENMQKAAQYLIGSHDFTAFSNAKSKKKSM--VREIYMLDVV 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + +++P+IL + R ++ A
Sbjct: 178 ESEGFIQIRVNGNGFLHNMVRKIVGALVEVGLGQLDAEVIPQILEAKQRNQI---NCLAD 234
Query: 290 PHGLCLVEVKY 300
GL L +V +
Sbjct: 235 ASGLYLEKVDF 245
>gi|228931644|ref|ZP_04094550.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228828072|gb|EEM73800.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 252
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 10 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 67
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI + ++ EFHAR+ + K Y Y++
Sbjct: 68 IHFDTPLSLEEWQWSNA-LNTMLPNDIVITQVEKKTEEFHARYGVERKEYRYRVLVSKTA 126
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 127 DVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 184
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 185 DDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 241
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 242 GLYLWQVNYN 251
>gi|366052631|ref|ZP_09450353.1| tRNA pseudouridine synthase A [Lactobacillus suebicus KCTC 3549]
Length = 251
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/258 (37%), Positives = 152/258 (58%), Gaps = 12/258 (4%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
++++++ AYDG+ +AG+Q Q T++ ++ A+ ++ K + + G+ RTD GVHA
Sbjct: 2 YRYKIIFAYDGSDFAGFQVQPHQRTVEKTLKIAVNKIAKNPDPAIEVYGSGRTDAGVHAL 61
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQVAHF PF +S+ ALN LLP D+ V+ FHAR+SA K+Y Y++
Sbjct: 62 GQVAHFDIPFDLPD-DSMRRALNSLLPLDMMVKSAEHVDANFHARYSAHRKLYRYRVSQG 120
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV----NVQRNDRLLNPVKSVF 224
+DPF+R Y H Y L+ M+ A + +G+HDF++ V + N R++ + ++
Sbjct: 121 EFVDPFKRRYTAHYKYPLDIERMQIAVKDLIGEHDFTSLVASGSQTKSNVRIIYHAQ-IW 179
Query: 225 RFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
R E + E EG+GFLY QVR MV+LLL+IG + P + +P++LA +DR +
Sbjct: 180 R---DEHDQEIIFEFEGNGFLYNQVRIMVSLLLEIGNDQRPVNDIPRVLAARDRNQARG- 235
Query: 285 ALSAPPHGLCLVEVKYNE 302
+AP GL LVEV Y++
Sbjct: 236 --TAPASGLYLVEVNYDD 251
>gi|424824853|ref|ZP_18249840.1| tRNA pseudouridine synthase A [Chlamydophila abortus LLG]
gi|333409952|gb|EGK68939.1| tRNA pseudouridine synthase A [Chlamydophila abortus LLG]
Length = 268
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/250 (36%), Positives = 149/250 (59%), Gaps = 10/250 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
+++AY GT YAGWQ Q + +IQ ++E +L +V + + + + RTD GVHA+GQVA
Sbjct: 6 ILLAYQGTAYAGWQRQPNDLSIQEVIENSLAQVVG---KRIPVTSSGRTDAGVHAFGQVA 62
Query: 113 HFITPF--SYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
HF P + SI LN LLP DI +R++ +FH+RFSA +K Y Y +
Sbjct: 63 HFSQPDHPQFSQASSIKKMLNALLPKDIVIRDVVLGDDKFHSRFSAIAKEYRYVLTRSPK 122
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
P++R++AY+ + L T LM++ A+Y +G HDF++F N R+ + ++++F D+++
Sbjct: 123 PLPWERYFAYYPRHHLKTDLMQEGAQYLLGTHDFASFANHGRD--YTSTIRTLFNLDIVD 180
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G + + G+GFLY+ VRN+V LL I + PP+ + +IL ++R++ +AP
Sbjct: 181 HGETVTIICRGNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILMQKNRRQGPP---AAPS 237
Query: 291 HGLCLVEVKY 300
H L L V Y
Sbjct: 238 HALSLYHVCY 247
>gi|154505512|ref|ZP_02042250.1| hypothetical protein RUMGNA_03049 [Ruminococcus gnavus ATCC 29149]
gi|336431647|ref|ZP_08611492.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_58FAA]
gi|153794170|gb|EDN76590.1| tRNA pseudouridine synthase A [Ruminococcus gnavus ATCC 29149]
gi|336019920|gb|EGN49638.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_58FAA]
Length = 246
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 149/253 (58%), Gaps = 9/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ +L +AYDGT Y GWQ Q + T++ ++ +AL KL E++ ++GASRTD+GVHA G
Sbjct: 3 RLKLTVAYDGTNYCGWQIQPNGITVEEVLNRAL---RKLTGEEITVIGASRTDSGVHALG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
VA F + S E I ALN LP DI V ++H R+ K Y Y I N
Sbjct: 60 NVAVFDSETSIPP-ERISYALNQRLPDDIVVIRSEEVSADWHPRYCNSKKTYEYHILNAK 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ DP +R Y + L+ M++AA+Y VG HDF +F NV+ + + + V++++ D++
Sbjct: 119 IPDPTRRLTRYFVSFDLDIEKMKKAAQYLVGTHDFVSFCNVRTD--VEDTVRTIYSLDIL 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+G + + ++G+GFLY VR +V L+++G+ P+ V +IL ++RK ++AP
Sbjct: 177 PVGDEITIRIQGNGFLYNMVRIIVGTLVRVGRGFYTPEQVQEILEAKNRKAA---GVTAP 233
Query: 290 PHGLCLVEVKYNE 302
P GL LV ++Y E
Sbjct: 234 PQGLFLVGIEYEE 246
>gi|377556458|ref|ZP_09786163.1| tRNA pseudouridine synthase A [Lactobacillus gastricus PS3]
gi|376168386|gb|EHS87160.1| tRNA pseudouridine synthase A [Lactobacillus gastricus PS3]
Length = 260
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/258 (37%), Positives = 151/258 (58%), Gaps = 12/258 (4%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+++++ AYDG ++G+Q Q T++ ++ A+ ++ K L ++G+ RTD GVHA
Sbjct: 2 YRYKITFAYDGAGFSGFQIQPHKRTVEQTLKTAVNKIAKNPDPPLHVIGSGRTDAGVHAL 61
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
QVAHF P+ ES+ ALN +LP DI V++ +FHAR+ SK Y Y++
Sbjct: 62 NQVAHFDMPYLIPD-ESMRKALNSILPLDILVKKAERVPNDFHARYDTHSKRYRYRVDQG 120
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV----NVQRNDRLLNPVKSVF 224
++PF+R Y H Y L+ M++AA+ +G+HDF++FV Q N R ++ V +
Sbjct: 121 EFVNPFKRLYTAHYKYPLDLAKMQRAAQDLLGEHDFTSFVASGSQAQSNVRRIDDV--LV 178
Query: 225 RFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
+ D I + E EG+GFLY QVR MVALLL+IG P D +P++LA +DR+
Sbjct: 179 KRDEINHEVI--FEFEGNGFLYNQVRIMVALLLEIGNGQRPVDDIPRVLAAKDRQAA--- 233
Query: 285 ALSAPPHGLCLVEVKYNE 302
++AP GL LV V Y +
Sbjct: 234 RMTAPATGLYLVRVNYAD 251
>gi|375006952|ref|YP_004980582.1| tRNA pseudouridine synthase A 1 [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359285798|gb|AEV17482.1| tRNA pseudouridine synthase A 1 [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 258
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/254 (40%), Positives = 148/254 (58%), Gaps = 8/254 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +IAYDGT ++G+Q Q T+Q E+ L R+ K + +R+ + RTD GVHA+GQV
Sbjct: 6 KCIIAYDGTHFSGYQIQPGKRTVQGEFEEVLRRMHKGTK--VRVAASGRTDAGVHAYGQV 63
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S E ALN LP DI VR + A +FHARFSAK+K Y YK++ A
Sbjct: 64 IHFDTPLSLSS-EQWKKALNAQLPDDIVVRFVQEADADFHARFSAKAKEYRYKVWTAAER 122
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+RHY Y L+ + M +A G HDF++F + + + + + V++++R +V
Sbjct: 123 DVFRRHYCAWHPYSLHISAMNEALGLLHGTHDFTSFCSAKTS--IEDRVRTMYRAEVKAD 180
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G +L+ GSGFLY VR +V +L+IG+ P + +LA +DR+ LA +AP
Sbjct: 181 GPMLEFRFVGSGFLYNMVRIIVGTVLEIGQGKRSPADISMLLAAKDRR-LA--GPTAPAE 237
Query: 292 GLCLVEVKYNEEHL 305
GL L V Y +E L
Sbjct: 238 GLYLWRVYYEDECL 251
>gi|345018501|ref|YP_004820854.1| tRNA pseudouridine synthase A [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033844|gb|AEM79570.1| tRNA pseudouridine synthase A [Thermoanaerobacter wiegelii Rt8.B1]
Length = 244
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 143/248 (57%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
+V+ YDGT Y GWQ+Q + T+Q +++KA+ +VT E++ L+GASRTDTGVHA QVA
Sbjct: 6 IVVEYDGTNYHGWQYQENAVTVQEVLQKAIKKVTG---EEVNLIGASRTDTGVHALYQVA 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T E + ALN +LP DI V + FHAR+SAK K Y Y I N
Sbjct: 63 NFRTNTKIPA-EKLPYALNSVLPDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRKFPM 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P R+Y +H Y L+ M++AA Y +G HDFSAF + +++V+ + +
Sbjct: 122 PTMRNYCWHISYPLSIEKMKKAASYLIGTHDFSAF--KASGSSKTSTIRTVYDLTIEKNE 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ +E+E +GFLY VR +V L +G I + V IL ++DR K ++APP G
Sbjct: 180 EFINIEIEANGFLYNMVRIIVGTLSYVGLGKIEENEVYDILKSRDR---TKAGITAPPQG 236
Query: 293 LCLVEVKY 300
L L+++ Y
Sbjct: 237 LYLIKIMY 244
>gi|326390628|ref|ZP_08212183.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus JW
200]
gi|325993306|gb|EGD51743.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus JW
200]
Length = 244
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 143/248 (57%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
+V+ YDGT Y GWQ+Q + T+Q +++KA+ +VT E++ L+GASRTDTGVHA QVA
Sbjct: 6 IVVEYDGTNYHGWQYQKNAVTVQEVLQKAIKKVTG---EEVNLIGASRTDTGVHALYQVA 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T E + ALN +LP DI V + FHAR+SAK K Y Y I N
Sbjct: 63 NFKTNTKIPA-EKLPYALNSVLPDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRKFQM 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P R+Y +H Y L+ M++AA Y +G HDFSAF + +++V+ + +
Sbjct: 122 PTMRNYCWHIDYPLSIEKMKKAASYLIGTHDFSAF--KASGSSKTSTIRTVYDLTIEKDE 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ +E+E +GFLY VR +V L +G I + V IL ++DR K ++APP G
Sbjct: 180 DFINIEIEANGFLYNMVRIIVGTLSYVGLGKIEVNEVYDILTSRDR---TKAGITAPPQG 236
Query: 293 LCLVEVKY 300
L L+++ Y
Sbjct: 237 LYLIKIMY 244
>gi|433448925|ref|ZP_20411790.1| tRNA pseudouridine synthase A [Weissella ceti NC36]
gi|429539314|gb|ELA07351.1| tRNA pseudouridine synthase A [Weissella ceti NC36]
Length = 249
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/254 (37%), Positives = 149/254 (58%), Gaps = 10/254 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ IAYDGT + GWQ Q T+Q +E A+ ++ K E +R+ G+ RTD VHA G
Sbjct: 3 RYKATIAYDGTDFFGWQVQPGKRTVQLELEAAVNKMAKNPAEPIRVQGSGRTDARVHAIG 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVAHF PF+ E++ L+ +LP DI ++++ EFHA+++A K Y Y+
Sbjct: 63 QVAHFDLPFNIPA-EAVRKGLSTMLPYDIGIKDVEIVDDEFHAQYAAHDKTYRYRFSTTE 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
DPF+R+Y H +L+T LM+QA +VG+HD+ +FV + V++V+ ++I
Sbjct: 122 FRDPFKRNYTGHWNRRLDTDLMQQAIGDYVGEHDWLSFVAAGFQQK--TTVRTVYSAEMI 179
Query: 230 ---EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
E + E G+GFLY Q+R MV +LL+IG + P D + ++ +DR+E
Sbjct: 180 LKPEENEIW-FEFSGNGFLYNQIRIMVGVLLEIGHGSRPVDDIKRLFEVKDRQEA---RF 235
Query: 287 SAPPHGLCLVEVKY 300
+AP GL LVEV+Y
Sbjct: 236 TAPAQGLYLVEVRY 249
>gi|187776609|ref|ZP_02993082.1| hypothetical protein CLOSPO_00123 [Clostridium sporogenes ATCC
15579]
gi|187775268|gb|EDU39070.1| tRNA pseudouridine synthase A [Clostridium sporogenes ATCC 15579]
Length = 246
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 142/251 (56%), Gaps = 11/251 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPP--TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+L + YDGT Y GWQ Q + T+Q +EK + +TK E + + GASRTD+GVHA G
Sbjct: 5 KLKLEYDGTNYCGWQKQKNEKFITLQGTLEKVISNITK---EKVEITGASRTDSGVHAKG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
+ +F T S E++ +N LPPDI V EFH+RF +K K Y Y I N +
Sbjct: 62 YMCNFFTN-SRIPPENLQRVINNNLPPDIVVLSSEEVSSEFHSRFCSKGKTYEYTILNKS 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
R+Y +H YKL+ M+ A++YF+G HDFSAF + + V+++ +F++
Sbjct: 121 EPIAIGRNYVFHFKYKLDIDKMKIASKYFIGTHDFSAFQT--KGSSVKTSVRTISKFEIN 178
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G L++ + G GFLY VR +V L++IG P+ + ++ ++DR++ K P
Sbjct: 179 KSGDLIKFIITGDGFLYNMVRIIVGTLIEIGLNKREPEYIEYVIKSKDRRKAGK---CVP 235
Query: 290 PHGLCLVEVKY 300
GLCL EV Y
Sbjct: 236 SSGLCLKEVFY 246
>gi|23097605|ref|NP_691071.1| tRNA pseudouridine synthase A [Oceanobacillus iheyensis HTE831]
gi|38258776|sp|Q8CXP1.1|TRUA_OCEIH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|22775828|dbj|BAC12106.1| tRNA pseudouridine synthase A [Oceanobacillus iheyensis HTE831]
Length = 253
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 150/253 (59%), Gaps = 7/253 (2%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ + ++YDG+ +AG+Q Q T+Q ++EKAL + K + +R+ + RTDTGVHA G
Sbjct: 3 RLKCTVSYDGSDFAGFQVQPDHRTVQGVLEKALYNMHK--GKSIRIQASGRTDTGVHAVG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF +P + ALN LLP D+R++++ EFHAR+S K K YHY + N+
Sbjct: 61 QVIHFDSPLEIPE-RNWKQALNTLLPDDVRIQKVEKKTEEFHARYSVKEKEYHYFVLNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ FQR Y YH KL+ M++A +Y G HDF++F + + + + + V++++
Sbjct: 120 DPNVFQRGYVYHEPRKLDLERMQEACQYLEGTHDFTSFSSAKSSVK-GSKVRTLYHVSCH 178
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G ++ GSGFLY VR M+++L+ +GK P+ + +LA+++R+++ K +
Sbjct: 179 QTGTNIEFIFRGSGFLYNMVRIMMSVLIDVGKGKRNPEDIIDLLASKNRQQIGK---TMA 235
Query: 290 PHGLCLVEVKYNE 302
P GL L V Y E
Sbjct: 236 PQGLYLWRVSYEE 248
>gi|392958512|ref|ZP_10324021.1| tRNA pseudouridine synthase A [Bacillus macauensis ZFHKF-1]
gi|391875413|gb|EIT84024.1| tRNA pseudouridine synthase A [Bacillus macauensis ZFHKF-1]
Length = 245
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 145/251 (57%), Gaps = 8/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+W+ +++YDGT + G+Q Q S T+Q +E L ++ K +R+ + RTD GVHA G
Sbjct: 3 RWKAIVSYDGTNFLGYQVQASGRTVQQEIETVLKKMHK--GLAVRIAASGRTDAGVHAIG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV H+ + + E+ ALN +LP DI + ++ +FHAR+ A K YHY ++ +
Sbjct: 61 QVIHWDSALTLAS-EAWKKALNAMLPHDIHIEKVERVNDDFHARYGAVKKTYHYHLHIGS 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ F RH+AYH Y L MR+A E G HDF++F + + + + V++++ ++V
Sbjct: 120 EPNVFNRHFAYHFPYPLALAPMREAMERLCGTHDFTSFSSARST--VEDKVRTIYSYEVQ 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E G L +V GSGFLY VR M LL +G+ I P + ++L ++R+ K +AP
Sbjct: 178 ERGQELIFKVTGSGFLYNMVRIMTGTLLDVGQGRISPAAIDEMLLAKNREAAGK---TAP 234
Query: 290 PHGLCLVEVKY 300
HGL L EV+Y
Sbjct: 235 AHGLYLYEVQY 245
>gi|389573482|ref|ZP_10163556.1| tRNA pseudouridine synthase A [Bacillus sp. M 2-6]
gi|388426797|gb|EIL84608.1| tRNA pseudouridine synthase A [Bacillus sp. M 2-6]
Length = 247
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/253 (39%), Positives = 144/253 (56%), Gaps = 7/253 (2%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
K + ++YDGT + G+Q Q TIQ +E AL R+ K + E + +V + RTD+GVHA
Sbjct: 1 MKVKCTVSYDGTHFKGYQVQPGQRTIQTEIESALARMHK-QDELIPIVASGRTDSGVHAK 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF TP + +E ALN LLP DIRV + FHARFS SK Y YK+ +
Sbjct: 60 GQVIHFDTPLAIP-MERWPFALNSLLPDDIRVLKAEEVDESFHARFSVVSKEYRYKVSTE 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
+ F R YA H Y+L+ MR+AA + +G HDF++F N + + V+ ++ +
Sbjct: 119 THQNVFTRQYACHFPYRLDADKMREAAGHLIGIHDFTSFCAA--NTEVQDKVREIYTLEW 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ L++ V G+GFLY VR + LL+IG P+ + +LA ++R+ K +A
Sbjct: 177 KNVSDGLEMRVRGNGFLYNMVRIIAGTLLEIGSGKFHPEEIKAMLAARNREAAGK---TA 233
Query: 289 PPHGLCLVEVKYN 301
P HGL L EV Y+
Sbjct: 234 PSHGLYLWEVFYD 246
>gi|325660678|ref|ZP_08149308.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 4_1_37FAA]
gi|325473039|gb|EGC76247.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 4_1_37FAA]
Length = 249
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 139/251 (55%), Gaps = 12/251 (4%)
Query: 51 WRLVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ IAYDG Y GWQ T+ P TIQ +E+ L +++E +++ G+ RTD GVHA G
Sbjct: 9 YKMTIAYDGGGYKGWQRLTNEPGTIQGTIERVL---SEIEGSPVKISGSGRTDAGVHAKG 65
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVAH + D E + LN +LP DIR+ + + FH+R+SA SK+Y Y+I +
Sbjct: 66 QVAHVFLKTNEDP-ELLRQELNRMLPEDIRICRVESVSQSFHSRYSAVSKVYEYRIDQRS 124
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
D F R Y YH L+ MRQAA++ G HDF +F + + D V+++F D+
Sbjct: 125 RADVFTRKYCYHRPVHLDLDRMRQAADHLTGTHDFGSFTDNKEAD----SVRTIFSIDMK 180
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E L L G GFLY VR + LL++G+ P+ V + +DR + AP
Sbjct: 181 EENEKLVLAFCGDGFLYHMVRILAGTLLEVGEGIRTPESVLEAFHHRDR---SLTGFLAP 237
Query: 290 PHGLCLVEVKY 300
HGLCL EV Y
Sbjct: 238 AHGLCLREVNY 248
>gi|154684666|ref|YP_001419827.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens FZB42]
gi|166228678|sp|A7Z0S0.1|TRUA_BACA2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|154350517|gb|ABS72596.1| TruA [Bacillus amyloliquefaciens FZB42]
Length = 247
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 101/250 (40%), Positives = 138/250 (55%), Gaps = 7/250 (2%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ IAYDG + G+Q Q T+Q +EKAL + K + + + + RTD+ VHA GQV
Sbjct: 4 KCTIAYDGHLFNGYQVQPGKRTVQSELEKALAVIHKTDGR-VPVYSSGRTDSDVHAAGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S G E ALN LLP DI V+ A FHARFSA K Y Y +Y +
Sbjct: 63 IHFDTPLSIPG-EKWPFALNALLPDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTEKHP 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+RHYAYH Y LN MR+A+ + VG HDF++F + + + V++++ D E
Sbjct: 122 DVFKRHYAYHFAYPLNVQKMREASRHLVGTHDFTSFCAA--DTAVQDKVRTIYELDWTET 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
LQ+ + G+GFLY VR + LL G PD V +L +DR+ + +AP H
Sbjct: 180 VDGLQMRITGNGFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGR---TAPGH 236
Query: 292 GLCLVEVKYN 301
GL L V Y+
Sbjct: 237 GLYLWSVCYD 246
>gi|291524335|emb|CBK89922.1| pseudouridylate synthase I [Eubacterium rectale DSM 17629]
gi|291527615|emb|CBK93201.1| pseudouridylate synthase I [Eubacterium rectale M104/1]
Length = 244
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/252 (37%), Positives = 142/252 (56%), Gaps = 9/252 (3%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+ ++++AYDGT Y GWQ Q + TI+ ++ + L R+ K ED+++ GASRTD GVH+
Sbjct: 1 MRVKMIVAYDGTNYCGWQIQPNGITIEQVLNEHLSRLLK---EDIKVTGASRTDAGVHSL 57
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
G V F T E I ALN LP DI V + +FH RFS K Y Y+I N
Sbjct: 58 GNVCMFDTNTRMPA-EKISYALNQKLPEDIVVVDSCEVSDDFHPRFSKSRKTYEYRILNA 116
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
+P +R Y Y L+T M +AA+Y +G+HDF++F + N + V++++ V
Sbjct: 117 RFRNPTRRLDTYFYHYPLDTEKMSEAAKYLIGEHDFASFCSA--NSQAQTTVRTIYDCTV 174
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ G ++ + V G+GFLY VR + L++IG +P D + I+A DR A +A
Sbjct: 175 SKAGDIITIRVTGNGFLYNMVRIIAGTLVKIGGSDMPADAMKDIIAATDR---AAAGPTA 231
Query: 289 PPHGLCLVEVKY 300
P HGL ++ +KY
Sbjct: 232 PAHGLTMIGLKY 243
>gi|255348836|ref|ZP_05380843.1| tRNA pseudouridine synthase A [Chlamydia trachomatis 70]
gi|255503376|ref|ZP_05381766.1| tRNA pseudouridine synthase A [Chlamydia trachomatis 70s]
Length = 267
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 144/250 (57%), Gaps = 10/250 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L IAY GT Y+GWQ+Q + +IQ ++E L ++ + ++ + RTD GVHA GQ+A
Sbjct: 7 LQIAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFR---ISVISSGRTDAGVHAQGQIA 63
Query: 113 HFITPFS--YDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
HF P + I LN LLP DI +R+ +FH+RFSA +K Y Y +
Sbjct: 64 HFHCPDHPHFTDPRQIQKMLNALLPHDIVIRDAVMTDGDFHSRFSAIAKEYRYTLSLLPK 123
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
P R + + YKLN M++AA+Y VG HDF++F N+ R + +++++ D+ E
Sbjct: 124 PVPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGRE--YSSTIRTLYTLDLSE 181
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
L+ + G+GFLY+ VRN+V LL IGK PP+ + +LAT+DR+ K SAPP
Sbjct: 182 QEHLVTVICRGNGFLYKMVRNIVGALLDIGKGKYPPEYLLDMLATKDRR---KGPPSAPP 238
Query: 291 HGLCLVEVKY 300
+GL L V Y
Sbjct: 239 YGLSLHHVCY 248
>gi|255507054|ref|ZP_05382693.1| tRNA pseudouridine synthase A [Chlamydia trachomatis D(s)2923]
gi|385241841|ref|YP_005809681.1| tRNA pseudouridine synthase A [Chlamydia trachomatis E/11023]
gi|385245448|ref|YP_005814271.1| tRNA pseudouridine synthase A [Chlamydia trachomatis E/150]
gi|386262820|ref|YP_005816099.1| tRNA pseudouridine synthase A [Chlamydia trachomatis Sweden2]
gi|389858159|ref|YP_006360401.1| tRNA pseudouridine synthase A [Chlamydia trachomatis F/SW4]
gi|389859035|ref|YP_006361276.1| tRNA pseudouridine synthase A [Chlamydia trachomatis E/SW3]
gi|389859911|ref|YP_006362151.1| tRNA pseudouridine synthase A [Chlamydia trachomatis F/SW5]
gi|289525508|emb|CBJ14985.1| tRNA pseudouridine synthase A [Chlamydia trachomatis Sweden2]
gi|296435064|gb|ADH17242.1| tRNA pseudouridine synthase A [Chlamydia trachomatis E/150]
gi|296438784|gb|ADH20937.1| tRNA pseudouridine synthase A [Chlamydia trachomatis E/11023]
gi|380249231|emb|CCE14523.1| tRNA pseudouridine synthase A [Chlamydia trachomatis F/SW5]
gi|380250106|emb|CCE13634.1| tRNA pseudouridine synthase A [Chlamydia trachomatis F/SW4]
gi|380250984|emb|CCE12745.1| tRNA pseudouridine synthase A [Chlamydia trachomatis E/SW3]
gi|440527170|emb|CCP52654.1| tRNA pseudouridine synthase A [Chlamydia trachomatis D/SotonD1]
gi|440529844|emb|CCP55328.1| tRNA pseudouridine synthase A [Chlamydia trachomatis E/SotonE4]
gi|440530743|emb|CCP56227.1| tRNA pseudouridine synthase A [Chlamydia trachomatis E/SotonE8]
gi|440531634|emb|CCP57144.1| tRNA pseudouridine synthase A [Chlamydia trachomatis F/SotonF3]
gi|440535211|emb|CCP60721.1| tRNA pseudouridine synthase A [Chlamydia trachomatis E/Bour]
Length = 267
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 144/250 (57%), Gaps = 10/250 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L IAY GT Y+GWQ+Q + +IQ ++E L ++ + ++ + RTD GVHA GQ+A
Sbjct: 7 LQIAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFR---ISVISSGRTDAGVHAQGQIA 63
Query: 113 HFITPFS--YDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
HF P + I LN LLP DI +R+ +FH+RFSA +K Y Y +
Sbjct: 64 HFHCPDHPHFTDPRQIQKMLNALLPHDIVIRDAVMTDGDFHSRFSAIAKEYRYTLSLLPK 123
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
P R + + YKLN M++AA+Y VG HDF++F N+ R + +++++ D+ E
Sbjct: 124 PLPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGRE--YSSTIRTLYTLDLSE 181
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
L+ + G+GFLY+ VRN+V LL IGK PP+ + +LAT+DR+ K SAPP
Sbjct: 182 QEHLVTVICRGNGFLYKMVRNIVGALLDIGKGKYPPEYLLDMLATKDRR---KGPPSAPP 238
Query: 291 HGLCLVEVKY 300
+GL L V Y
Sbjct: 239 YGLSLHHVCY 248
>gi|295093665|emb|CBK82756.1| pseudouridylate synthase I [Coprococcus sp. ART55/1]
Length = 247
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 141/249 (56%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L++AYDGT Y GWQ Q + T++ ++ K L ++L ED++++GASRTD+GVHA G V
Sbjct: 7 KLIVAYDGTNYCGWQVQINGITVEEVLNKTL---SELCHEDIKVIGASRTDSGVHALGNV 63
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T G E ALN LP DIR++E +FH R+ K Y YKI N
Sbjct: 64 AVFDTESGIPG-EKFSFALNQRLPEDIRIQESCQVADDFHPRYCDTIKTYEYKILNRRFD 122
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P +R Y+ Y L+ M++AA VG+HDF +F + + ++ N V+++ + +
Sbjct: 123 MPTERLYSTFVYYPLDIDKMKRAAAVLVGEHDFKSFCSSR--SQVENTVRTITDITIDKA 180
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G ++ + + G+GFLY VR +V L++IG P D + IL +DR K A
Sbjct: 181 GDMIHIRISGNGFLYNMVRIIVGTLMKIGLGIWPEDCMESILEAKDR---TKAGPKAEAK 237
Query: 292 GLCLVEVKY 300
GL LVE+KY
Sbjct: 238 GLTLVEIKY 246
>gi|238916297|ref|YP_002929814.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750]
gi|238871657|gb|ACR71367.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750]
Length = 253
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 146/249 (58%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L++AYDGT Y+GWQ Q PTI+ ++KA + +L E++ + GASRTD GVHA+G V
Sbjct: 5 KLIVAYDGTEYSGWQIQPEAPTIEMCLDKA---IRELTGENVHVTGASRTDAGVHAYGNV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T + G + ALN LP I +++ +FH R K Y Y+I N V
Sbjct: 62 AVFDTESTIPG-DRFTFALNRFLPDSIVIQDSWEVSGDFHPRHCNTRKTYEYRILNTVVP 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P +R++ +H ++ M++AA Y VG+HDF +F V+ + V++++ +V++
Sbjct: 121 LPQKRNFTWHVTGSIDIEKMKEAAAYIVGEHDFKSFCCVRTQAE--STVRTIYSLEVLQE 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G+ + + ++G+GFLY VR + L+Q+GK P+ V ++L +DR + +APP
Sbjct: 179 GSEIIIRIKGNGFLYNMVRIITGTLIQVGKGRFKPEYVKQMLEAKDRTVAGQ---TAPPQ 235
Query: 292 GLCLVEVKY 300
GL LV ++Y
Sbjct: 236 GLTLVGIEY 244
>gi|429503682|ref|YP_007184866.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|429485272|gb|AFZ89196.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 247
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 138/250 (55%), Gaps = 7/250 (2%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ IAYDG + G+Q Q T+Q +EKAL + K + + + + RTD+ VHA GQV
Sbjct: 4 KCTIAYDGHLFNGYQVQPGKRTVQSELEKALAVIHKTDGR-VPVYSSGRTDSDVHAAGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S E ALN LLP DI V+ A FHARFSA K Y Y +Y +
Sbjct: 63 IHFDTPLSIPA-EKWPFALNALLPDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTEKHP 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+RHYAYH Y LN MR+A+ + VG HDF++F + + + V++++ D E
Sbjct: 122 DVFKRHYAYHFAYPLNVQKMREASRHLVGTHDFTSFCAA--DTAVQDKVRTIYELDWTET 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G LQ+ + G+GFLY VR + LL G P+ V +L +DR+ + +AP H
Sbjct: 180 GDGLQMRITGNGFLYNMVRIIAGTLLDTGAGKFSPEDVKAMLEAKDREAAGR---TAPGH 236
Query: 292 GLCLVEVKYN 301
GL L V Y+
Sbjct: 237 GLYLWSVCYD 246
>gi|228989617|ref|ZP_04149601.1| tRNA pseudouridine synthase A 2 [Bacillus pseudomycoides DSM 12442]
gi|228770154|gb|EEM18734.1| tRNA pseudouridine synthase A 2 [Bacillus pseudomycoides DSM 12442]
Length = 245
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 144/251 (57%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG RY GWQ + TIQ +E L +T E + ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGGRYKGWQRLGNNDNTIQGKIESVLSEMTGRE---IEIIGCSRTDAGVHALH 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + L+ + LN LP DI + ++ FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFKIDENLPELK-VKKYLNQYLPNDISITDVELISERFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA+Y +G HDF+AF N + + + V+ ++ DV+
Sbjct: 120 HTNPFMRKYSMHVGKKLNIENMQKAAQYLIGSHDFTAFSNAKSKKKSM--VREIYMLDVV 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + +++P+IL + R ++ A
Sbjct: 178 ESEGFIQIRVNGNGFLHNMVRKIVGALVEVGLGQLDAEVIPQILEAKQRNQI---NCLAD 234
Query: 290 PHGLCLVEVKY 300
GL L +V +
Sbjct: 235 ASGLYLEKVDF 245
>gi|423409809|ref|ZP_17386958.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG2X1-3]
gi|401652349|gb|EJS69906.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG2X1-3]
Length = 247
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGMHFYGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y + +R+A YFVG HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPIQIESIRKAIPYFVGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + D +P+ILA Q+R+ K AP H
Sbjct: 180 NDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDSDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 237 GLYLWQVNYN 246
>gi|15605190|ref|NP_219976.1| tRNA pseudouridine synthase A [Chlamydia trachomatis D/UW-3/CX]
gi|385240910|ref|YP_005808751.1| tRNA pseudouridine synthase A [Chlamydia trachomatis G/11222]
gi|385243671|ref|YP_005811517.1| tRNA pseudouridine synthase A [Chlamydia trachomatis D-EC]
gi|385244551|ref|YP_005812395.1| tRNA pseudouridine synthase A [Chlamydia trachomatis D-LC]
gi|8134751|sp|O84469.1|TRUA_CHLTR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|3328897|gb|AAC68063.1| Pseudouridylate Synthase I [Chlamydia trachomatis D/UW-3/CX]
gi|296436918|gb|ADH19088.1| tRNA pseudouridine synthase A [Chlamydia trachomatis G/11222]
gi|297748594|gb|ADI51140.1| tRNA pseudouridine synthase A [Chlamydia trachomatis D-EC]
gi|297749474|gb|ADI52152.1| tRNA pseudouridine synthase A [Chlamydia trachomatis D-LC]
gi|440525385|emb|CCP50636.1| tRNA pseudouridine synthase A [Chlamydia trachomatis K/SotonK1]
gi|440528062|emb|CCP53546.1| tRNA pseudouridine synthase A [Chlamydia trachomatis D/SotonD5]
gi|440528952|emb|CCP54436.1| tRNA pseudouridine synthase A [Chlamydia trachomatis D/SotonD6]
gi|440532527|emb|CCP58037.1| tRNA pseudouridine synthase A [Chlamydia trachomatis G/SotonG1]
Length = 267
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 144/250 (57%), Gaps = 10/250 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L IAY GT Y+GWQ+Q + +IQ ++E L ++ + ++ + RTD GVHA GQ+A
Sbjct: 7 LQIAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFR---ISVISSGRTDAGVHAQGQIA 63
Query: 113 HFITPFS--YDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
HF P + I LN LLP DI +R+ +FH+RFSA +K Y Y +
Sbjct: 64 HFHCPDHPHFTDPRQIQKMLNALLPHDIVIRDAVMTDEDFHSRFSAIAKEYRYTLSLLPK 123
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
P R + + YKLN M++AA+Y VG HDF++F N+ R + +++++ D+ E
Sbjct: 124 PLPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGRE--YSSTIRTLYTLDLSE 181
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
L+ + G+GFLY+ VRN+V LL IGK PP+ + +LAT+DR+ K SAPP
Sbjct: 182 QEHLVTVICRGNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRR---KGPPSAPP 238
Query: 291 HGLCLVEVKY 300
+GL L V Y
Sbjct: 239 YGLSLHHVCY 248
>gi|390934155|ref|YP_006391660.1| tRNA pseudouridine synthase A [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389569656|gb|AFK86061.1| tRNA pseudouridine synthase A [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 239
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 143/248 (57%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
+VI YDGT Y GWQ Q + T+Q ++ KA+ ++T ED+ L+G+SRTD GVHA QVA
Sbjct: 1 MVIEYDGTNYHGWQMQKNAVTVQEVITKAIKKITS---EDVNLIGSSRTDAGVHALNQVA 57
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+FI+ + L I ALN +LP DI +R+ A +FH+R+SAK K Y Y IYN
Sbjct: 58 NFISNCNIP-LSKIPNALNSVLPKDIVIRDAYEAGMDFHSRYSAKGKRYKYIIYNRKFNS 116
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P R+Y++H +L+ M ++ Y G HDFSAF + + +++V + +
Sbjct: 117 PICRNYSWHISDELDLDKMVESLTYLKGTHDFSAF--KASGSSVKDSIRTVRDISLRKND 174
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
++ E+E GFLY VR +V ++ +G I P V +IL ++DR K +APP G
Sbjct: 175 FNVEFEIEADGFLYNMVRIIVGTIVDVGLGKINPIYVKEILESKDRGMAGK---TAPPQG 231
Query: 293 LCLVEVKY 300
L L ++ Y
Sbjct: 232 LFLTKIYY 239
>gi|451982071|ref|ZP_21930405.1| tRNA pseudouridine synthase A [Nitrospina gracilis 3/211]
gi|451760736|emb|CCQ91683.1| tRNA pseudouridine synthase A [Nitrospina gracilis 3/211]
Length = 258
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 99/251 (39%), Positives = 145/251 (57%), Gaps = 9/251 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L++ Y+G++Y GWQ+Q + TIQ ++EK L +T + +VG+ RTD+GVHA GQV
Sbjct: 5 KLLLEYEGSQYHGWQYQPNGITIQEVLEKRLETITG---KKTPVVGSGRTDSGVHAEGQV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
AHF T + + + ALN LLP DI VR + +FHAR SAK KIY Y + N
Sbjct: 62 AHFNTASNMTPRQFL-KALNSLLPHDIVVRAVEEVDSDFHARKSAKRKIYRYTLLNRDYP 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
+ A++ L T MR+AA + VGKH+F +F + + V+ + + +
Sbjct: 121 SALRCRQAHYVAQPLKVTAMRKAARHLVGKHNFKSFQGAGCEAK--SAVREIHDLSIKKR 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G ++ V+GSGFL VRN+V L+++G I PD + IL +DRK K +AP
Sbjct: 179 GDWIEFSVDGSGFLKHMVRNLVGTLIEVGYGRIEPDDIKAILKARDRK---KAGPTAPAR 235
Query: 292 GLCLVEVKYNE 302
GLCLVEV Y++
Sbjct: 236 GLCLVEVFYDK 246
>gi|340356749|ref|ZP_08679390.1| tRNA pseudouridine synthase A [Sporosarcina newyorkensis 2681]
gi|339620087|gb|EGQ24658.1| tRNA pseudouridine synthase A [Sporosarcina newyorkensis 2681]
Length = 245
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 99/252 (39%), Positives = 143/252 (56%), Gaps = 10/252 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ + IAYDGT +AG+Q Q + T+Q ++KAL+++ K + V + RTD GVHA G
Sbjct: 3 RMKATIAYDGTNFAGYQSQPNMRTVQSEIDKALVKLHK--DSSVYSVASGRTDAGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF TP D + ALN LLP D+RV + A +FHAR+ A K Y Y+
Sbjct: 61 QVIHFDTPL--DLADRWKMALNVLLPKDVRVIGVEEAAVDFHARYGATGKTYVYRWSYSE 118
Query: 170 VMDPFQRHYAYH-SVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
V PF+R++A H + + MR+ A++ +G HDF++F + + N V+++ + +
Sbjct: 119 VQSPFERNFAVHLGRWNPDVERMREGAQHLIGTHDFTSFCSAKTA--TTNKVRTIRKLSL 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
G L LEVEG GFLY VR + +LL +G P+ V KI +DRK K +A
Sbjct: 177 ERQGDHLVLEVEGDGFLYNMVRTIAGVLLAVGIGWDEPEDVRKIRDAKDRKMAGK---TA 233
Query: 289 PPHGLCLVEVKY 300
P HGL L+EV Y
Sbjct: 234 PAHGLYLMEVTY 245
>gi|424835359|ref|ZP_18260024.1| tRNA pseudouridine synthase A [Clostridium sporogenes PA 3679]
gi|365978152|gb|EHN14247.1| tRNA pseudouridine synthase A [Clostridium sporogenes PA 3679]
Length = 246
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 142/251 (56%), Gaps = 11/251 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPP--TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+L + YDGT Y GWQ Q + T+Q +EK + +TK E + + GASRTD+GVHA G
Sbjct: 5 KLKLEYDGTNYCGWQKQKNEKFITLQGTLEKVISNITK---EKVEITGASRTDSGVHAKG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
+ +F T S E++ +N LPPDI V EFH+RF +K K Y Y I N +
Sbjct: 62 YICNFFTN-SRIPPENLQKVINNNLPPDIVVLSSEEVSSEFHSRFCSKGKTYEYTILNKS 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
R+Y +H +KLN MR A++YF+G +DFSAF + + V+++ +F++
Sbjct: 121 EPIAIGRNYVFHFKHKLNIDKMRIASKYFIGTYDFSAFQT--KGSSVKTSVRTISKFEIN 178
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G ++ + G+GFLY VR +V L++IG P+ + ++ ++DR++ K P
Sbjct: 179 KSGDFIKFIITGNGFLYNMVRIIVGTLIEIGLNKREPEYIEYVIKSKDRRKAGK---CVP 235
Query: 290 PHGLCLVEVKY 300
GLCL EV Y
Sbjct: 236 SSGLCLKEVFY 246
>gi|385239986|ref|YP_005807828.1| tRNA pseudouridine synthase A [Chlamydia trachomatis G/9768]
gi|385242764|ref|YP_005810603.1| tRNA pseudouridine synthase A [Chlamydia trachomatis G/9301]
gi|385246373|ref|YP_005815195.1| tRNA pseudouridine synthase A [Chlamydia trachomatis G/11074]
gi|296435991|gb|ADH18165.1| tRNA pseudouridine synthase A [Chlamydia trachomatis G/9768]
gi|296437852|gb|ADH20013.1| tRNA pseudouridine synthase A [Chlamydia trachomatis G/11074]
gi|297140352|gb|ADH97110.1| tRNA pseudouridine synthase A [Chlamydia trachomatis G/9301]
Length = 267
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 144/250 (57%), Gaps = 10/250 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L IAY GT Y+GWQ+Q + +IQ ++E L ++ + ++ + RTD GVHA GQ+A
Sbjct: 7 LQIAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFR---ISVISSGRTDAGVHAQGQIA 63
Query: 113 HFITPFS--YDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
HF P + I LN LLP DI +R+ +FH+RFSA +K Y Y +
Sbjct: 64 HFHCPDHPHFTDPRQIQKMLNALLPHDIVIRDAVMTDGDFHSRFSAIAKEYRYTLSLLPK 123
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
P R + + YKLN M++AA+Y VG HDF++F N+ R + +++++ D+ E
Sbjct: 124 PVPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGRE--YSSTIRTLYTLDLSE 181
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
L+ + G+GFLY+ VRN+V LL IGK PP+ + +LAT+DR+ K SAPP
Sbjct: 182 QEHLVTVICRGNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRR---KGPPSAPP 238
Query: 291 HGLCLVEVKY 300
+GL L V Y
Sbjct: 239 YGLSLHHVCY 248
>gi|237802891|ref|YP_002888085.1| tRNA pseudouridine synthase A [Chlamydia trachomatis B/Jali20/OT]
gi|237804813|ref|YP_002888967.1| tRNA pseudouridine synthase A [Chlamydia trachomatis B/TZ1A828/OT]
gi|255311275|ref|ZP_05353845.1| tRNA pseudouridine synthase A [Chlamydia trachomatis 6276]
gi|255317577|ref|ZP_05358823.1| tRNA pseudouridine synthase A [Chlamydia trachomatis 6276s]
gi|376282472|ref|YP_005156298.1| tRNA pseudouridine synthase A [Chlamydia trachomatis A2497]
gi|385270163|ref|YP_005813323.1| tRNA pseudouridine synthase A [Chlamydia trachomatis A2497]
gi|231273113|emb|CAX10026.1| tRNA pseudouridine synthase A [Chlamydia trachomatis B/TZ1A828/OT]
gi|231274125|emb|CAX10919.1| tRNA pseudouridine synthase A [Chlamydia trachomatis B/Jali20/OT]
gi|347975303|gb|AEP35324.1| tRNA pseudouridine synthase A [Chlamydia trachomatis A2497]
gi|371908502|emb|CAX09132.1| tRNA pseudouridine synthase A [Chlamydia trachomatis A2497]
gi|438690396|emb|CCP49653.1| tRNA pseudouridine synthase A [Chlamydia trachomatis A/7249]
gi|438691481|emb|CCP48755.1| tRNA pseudouridine synthase A [Chlamydia trachomatis A/5291]
gi|438692854|emb|CCP47856.1| tRNA pseudouridine synthase A [Chlamydia trachomatis A/363]
gi|440533420|emb|CCP58930.1| tRNA pseudouridine synthase A [Chlamydia trachomatis Ia/SotonIa1]
gi|440534314|emb|CCP59824.1| tRNA pseudouridine synthase A [Chlamydia trachomatis Ia/SotonIa3]
Length = 267
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 144/250 (57%), Gaps = 10/250 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L IAY GT Y+GWQ+Q + +IQ ++E L ++ + ++ + RTD GVHA GQ+A
Sbjct: 7 LQIAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFR---ISVISSGRTDAGVHAQGQIA 63
Query: 113 HFITPFS--YDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
HF P + I LN LLP DI +R+ +FH+RFSA +K Y Y +
Sbjct: 64 HFHCPDHPHFTDPRQIQKMLNALLPHDIVIRDAVMTDGDFHSRFSAIAKEYRYTLSLLPK 123
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
P R + + YKLN M++AA+Y VG HDF++F N+ R + +++++ D+ E
Sbjct: 124 PLPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGRE--YSSTIRTLYTLDLSE 181
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
L+ + G+GFLY+ VRN+V LL IGK PP+ + +LAT+DR+ K SAPP
Sbjct: 182 QEHLVTVICRGNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRR---KGPPSAPP 238
Query: 291 HGLCLVEVKY 300
+GL L V Y
Sbjct: 239 YGLSLHHVCY 248
>gi|331085595|ref|ZP_08334679.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330407482|gb|EGG86984.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 239
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 137/249 (55%), Gaps = 12/249 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ IAYDG Y GWQ T+ P TIQ +E+ L +K+E +++ G+ RTD GVHA GQV
Sbjct: 1 MTIAYDGGGYKGWQRLTNEPGTIQGTIERVL---SKIEGSPVKISGSGRTDAGVHAKGQV 57
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
AH + D E + LN +LP DIR+ + + FH+R+SA SK+Y Y+I +
Sbjct: 58 AHAFLKTNEDP-ELLRQELNRMLPEDIRICLVESVSQSFHSRYSAVSKVYEYRIDQRSRA 116
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F R Y YH L+ MRQAA++ G HDF +F + + D V+++F D+ E
Sbjct: 117 DVFTRKYCYHRPVHLDLDRMRQAADHLTGTHDFGSFTDNKEAD----SVRTIFSIDMKEE 172
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L L G GFLY VR + LL++G+ P+ V + +DR + AP H
Sbjct: 173 NEKLVLAFRGDGFLYHMVRILAGTLLEVGEGIRTPESVLEAFHHRDR---SLTGFLAPAH 229
Query: 292 GLCLVEVKY 300
GLCL EV Y
Sbjct: 230 GLCLREVNY 238
>gi|423399415|ref|ZP_17376613.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG2X1-1]
gi|401644515|gb|EJS62205.1| tRNA pseudouridine synthase A 1 [Bacillus cereus BAG2X1-1]
Length = 247
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGMHFYGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y + +R+A YFVG HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPIQIESIRKAIPYFVGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + D +P+ILA Q+R+ K AP H
Sbjct: 180 DDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDSDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 237 GLYLWQVNYN 246
>gi|153938429|ref|YP_001392800.1| tRNA pseudouridine synthase A [Clostridium botulinum F str.
Langeland]
gi|384463763|ref|YP_005676358.1| tRNA pseudouridine synthase A [Clostridium botulinum F str. 230613]
gi|152934325|gb|ABS39823.1| tRNA pseudouridine synthase A [Clostridium botulinum F str.
Langeland]
gi|295320780|gb|ADG01158.1| tRNA pseudouridine synthase A [Clostridium botulinum F str. 230613]
Length = 246
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 138/251 (54%), Gaps = 11/251 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPP--TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+L + YDG Y GWQ Q + T+Q +EKA+ +TK E + ++GASRTD+GVHA G
Sbjct: 5 KLKLEYDGANYCGWQKQKNEKFITLQGTLEKAISNITK---EKIEVIGASRTDSGVHAKG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
+ +F T E++ +N LPPDI V A EFH+RF +K K Y Y + N +
Sbjct: 62 YICNFFTNTKIPP-ENLQKVINNNLPPDIVVLSSEEASSEFHSRFCSKGKTYEYTVLNSS 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
R+Y + KLN M+ A+ YF+G HDFSAF + + V+++ +F++
Sbjct: 121 QPIAIGRNYIFQFKNKLNIDNMKMASRYFIGTHDFSAFKT--KGSSIKTSVRTISKFEIN 178
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G ++ + G GFLY VR MV L++IG P+ + ++ ++DR + K P
Sbjct: 179 KKGDFIKFIITGDGFLYNMVRIMVGTLIEIGLNKREPEYIKYVIKSKDRTKAGK---CVP 235
Query: 290 PHGLCLVEVKY 300
GLCL EV Y
Sbjct: 236 SSGLCLKEVFY 246
>gi|160941032|ref|ZP_02088370.1| hypothetical protein CLOBOL_05925 [Clostridium bolteae ATCC
BAA-613]
gi|158435981|gb|EDP13748.1| hypothetical protein CLOBOL_05925 [Clostridium bolteae ATCC
BAA-613]
Length = 247
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 101/253 (39%), Positives = 150/253 (59%), Gaps = 12/253 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ RLV+AYDGT+Y GWQ Q TI+ ++ +AL T+L RE ++++GASRTD+GVHA G
Sbjct: 3 RIRLVVAYDGTQYHGWQIQPGAVTIESVLNEAL---TQLMREPIQVIGASRTDSGVHARG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVP-EFHARFSAKSKIYHYKIYND 168
VA F T S + I ALN LP DIRV ++S VP ++H R K Y Y+I N
Sbjct: 60 NVAVFDTE-SQMPPDKICMALNQRLPEDIRV-QVSEEVPSDWHPRKCTCIKTYEYRILNR 117
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
+ P +R Y++ YKL+ M+ AA G+HDF +F +V+ ++ + V++V+R DV
Sbjct: 118 RINMPMERLYSHFCYYKLDVDRMQAAANMLAGEHDFKSFCSVR--TQVTDTVRTVYRIDV 175
Query: 229 IEMG-ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
++ + V G+GFLY VR + L+ +G I + +P IL +DR+ +
Sbjct: 176 TRNADDIITIRVTGNGFLYNMVRIIAGTLMAVGTGHIQAEDMPSILEAKDRRAAGP---T 232
Query: 288 APPHGLCLVEVKY 300
AP GL L+E+KY
Sbjct: 233 APARGLTLIEMKY 245
>gi|138893815|ref|YP_001124268.1| tRNA pseudouridine synthase A [Geobacillus thermodenitrificans
NG80-2]
gi|196250992|ref|ZP_03149674.1| tRNA pseudouridine synthase A [Geobacillus sp. G11MC16]
gi|166228701|sp|A4IJL9.1|TRUA_GEOTN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|134265328|gb|ABO65523.1| tRNA pseudouridine synthase A [Geobacillus thermodenitrificans
NG80-2]
gi|196209464|gb|EDY04241.1| tRNA pseudouridine synthase A [Geobacillus sp. G11MC16]
Length = 253
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 100/252 (39%), Positives = 144/252 (57%), Gaps = 8/252 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ V+AYDGT ++G+Q Q T+Q E L R+ K +D+R+ + RTD GVHA+GQV
Sbjct: 6 KCVVAYDGTYFSGYQVQPGKRTVQGEFEGVLKRMHK--GDDVRITASGRTDAGVHAYGQV 63
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP + E ALN LP DI VR + A FHARFSAK+K Y Y ++ A
Sbjct: 64 IHFDTPLAL-SPEQWKKALNAQLPDDIAVRSVDEADSTFHARFSAKAKEYRYNVWTAAER 122
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+RHY Y L M +A G HDF++F + + + + V+++++ ++
Sbjct: 123 DVFRRHYCAWHPYPLRVDAMSEALGLLKGTHDFTSFCSAKTV--IEDRVRTIYQAEMEVD 180
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G +LQ GSGFLY VR +V +L++G+ PPD + +LA +DR+ LA +AP
Sbjct: 181 GPMLQFRFVGSGFLYNMVRIIVGTVLEVGQGKRPPDDIEALLAAKDRR-LA--GPTAPAE 237
Query: 292 GLCLVEVKYNEE 303
GL L V Y+ E
Sbjct: 238 GLYLWRVYYDGE 249
>gi|220930998|ref|YP_002507906.1| pseudouridylate synthase I [Halothermothrix orenii H 168]
gi|220931093|ref|YP_002508001.1| pseudouridylate synthase I [Halothermothrix orenii H 168]
gi|219992308|gb|ACL68911.1| pseudouridylate synthase I [Halothermothrix orenii H 168]
gi|219992403|gb|ACL69006.1| pseudouridylate synthase I [Halothermothrix orenii H 168]
Length = 246
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 142/250 (56%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQT-SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
++ + YDGT Y+GWQ Q +P TIQ ++ K L + K ++L+GASRTD GVHA GQ
Sbjct: 6 KITVEYDGTNYSGWQIQNNTPETIQGVLSKCLFDINK---SPVKLIGASRTDAGVHARGQ 62
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F +E I ALN LPPDI ++ +FHARF A+ K Y Y+I N
Sbjct: 63 VANFRLKVGIP-VERIPLALNSKLPPDIVCKDAEEVTEDFHARFDARGKRYIYRILNSEY 121
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
PF R+Y Y + LN MR+A +G+HDF++F +++ V+++ + D+
Sbjct: 122 PSPFLRNYTYFIPHNLNIDKMREAGSLLIGEHDFASFQASGGSNK--TTVRTITKLDIYR 179
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+++EV G+GFLY+ VR + L+++G V ++L +DR + +APP
Sbjct: 180 DQYQIKIEVCGNGFLYKMVRIIAGTLIEVGLGKRTVKSVGQLLEIKDRD---RAGFTAPP 236
Query: 291 HGLCLVEVKY 300
GL L+EV Y
Sbjct: 237 RGLTLIEVFY 246
>gi|363894615|ref|ZP_09321694.1| tRNA pseudouridine synthase A [Eubacteriaceae bacterium ACC19a]
gi|361961910|gb|EHL15072.1| tRNA pseudouridine synthase A [Eubacteriaceae bacterium ACC19a]
Length = 245
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 143/249 (57%), Gaps = 11/249 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L ++YDGT Y GWQ Q + +IQ +EKA+ +T RED+ L+ + RTD+GVHA GQV
Sbjct: 6 LKVSYDGTNYCGWQKQNNAVSIQQTLEKAISDIT---REDIELIASGRTDSGVHALGQVC 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T + + A+N LP DIRV E F+ARF+AK K Y Y+IYN +
Sbjct: 63 NFKTGSNIPS-QKFAYAINSKLPRDIRVIESKEVDFAFNARFTAKKKTYMYRIYNSEISS 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
PF Y+ KL+ LM + + +G +D+++F + N+ NPV++++ D+++
Sbjct: 122 PFYYKYSMQVAQKLDMDLMSKNVKMLIGTYDWTSFYTYETNNP-KNPVRTIYSADILKNS 180
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA-LSAPPH 291
++ E+EG+GFLY VR +V L+ IG DI +I+ +DR YA +A P
Sbjct: 181 NMITFEIEGNGFLYNMVRIIVGTLIDIGLNKNERDI-KRIIEKKDR----SYAGATAKPQ 235
Query: 292 GLCLVEVKY 300
GL L EV Y
Sbjct: 236 GLFLKEVCY 244
>gi|255526720|ref|ZP_05393623.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7]
gi|255509607|gb|EET85944.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7]
Length = 249
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 140/254 (55%), Gaps = 14/254 (5%)
Query: 52 RLVIAYDGTRYAGWQFQT-----SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVH 106
+++I YDG+RY GWQ Q S TIQ +E L +K+ ED+++VG RTDTGVH
Sbjct: 5 KMLIQYDGSRYKGWQKQNHKDNNSVSTIQDKIESVL---SKMTGEDIQVVGCGRTDTGVH 61
Query: 107 AWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIY 166
A VA+F T S +E + L LP DI V+ + FHAR++AKSK Y Y I
Sbjct: 62 AENYVANFHTD-SILTVEDMLKYLYEFLPEDIVVKSLRDTSERFHARYNAKSKTYLYTIN 120
Query: 167 NDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRF 226
N+ + F R YAYH LN + MR AAE G HDF +F +++ N + + V+++
Sbjct: 121 NNKFRNVFNRKYAYHVEENLNLSEMRDAAEVLTGTHDFQSFTSLKSNTK--STVRTINYI 178
Query: 227 DVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
+ E ++ +EV G+ FL VR +V LL +GK + P V KIL + R E
Sbjct: 179 SITEEHGMIGIEVNGNSFLLNMVRIIVGTLLDVGKGILKPSDVEKILYEKKRAEAGPM-- 236
Query: 287 SAPPHGLCLVEVKY 300
A GLCL +++Y
Sbjct: 237 -AAAKGLCLKDIQY 249
>gi|342214140|ref|ZP_08706848.1| tRNA pseudouridine synthase A [Veillonella sp. oral taxon 780 str.
F0422]
gi|341595825|gb|EGS38464.1| tRNA pseudouridine synthase A [Veillonella sp. oral taxon 780 str.
F0422]
Length = 260
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/255 (38%), Positives = 150/255 (58%), Gaps = 9/255 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L++AYDGT G+Q Q + PT+Q +E+AL +K+ E + + G+SRTD GVHA GQV
Sbjct: 6 QLIVAYDGTELCGYQRQQNGPTVQGYLEEAL---SKVCNESITIYGSSRTDAGVHARGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
F T ++++ AL +PP I VRE +++ R K K Y Y I+NDAV+
Sbjct: 63 VAFTTTGKIP-VDNLMRALIAHMPPYIVVREAQELPSDWNPRNYVKGKEYIYTIHNDAVV 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
DP Q YAYH L+ + M+QAA+ G H+FS F N + +PVK+++ V +
Sbjct: 122 DPLQLRYAYHVRKPLDISSMKQAAKALEGTHNFSTFKG--HNTTIQDPVKTMYAVKVSQQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G+ +++ V G GF+Y VRN+ L+ +G P+ V I+A+++R+ + K +AP H
Sbjct: 180 GSTVRIHVLGDGFVYHMVRNIAGFLVDVGLGRFQPEDVLCIIASENRQLIGK---TAPAH 236
Query: 292 GLCLVEVKYNEEHLR 306
GLCL V +E L+
Sbjct: 237 GLCLDTVFTDEASLQ 251
>gi|148381387|ref|YP_001255928.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC
3502]
gi|153931537|ref|YP_001385762.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC
19397]
gi|153934471|ref|YP_001389169.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. Hall]
gi|148290871|emb|CAL85007.1| tRNA pseudouridine synthase [Clostridium botulinum A str. ATCC
3502]
gi|152927581|gb|ABS33081.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC
19397]
gi|152930385|gb|ABS35884.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. Hall]
Length = 246
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 139/251 (55%), Gaps = 11/251 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPP--TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+L + YDG Y GWQ Q + T+Q +EKA+ +TK E + ++GASRTD+GVHA G
Sbjct: 5 KLKLEYDGANYCGWQKQKNEKFITLQGTLEKAISNITK---EKIEVIGASRTDSGVHARG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
+ +F T E++ +N +LPPDI V A EFH+RF +K K Y Y + N +
Sbjct: 62 YICNFFTNTKIPP-ENLQKVINNILPPDIVVLSSEEASSEFHSRFCSKGKTYEYTVLNSS 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
R+Y + KLN M+ A+ YF+G HDFSAF + + V+++ +F++
Sbjct: 121 KPIAIGRNYIFQFKDKLNIDNMKMASRYFIGTHDFSAFKT--KGSSIKTSVRTISKFEIN 178
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G ++ + G GFLY VR +V L++IG P+ + ++ ++DR + K P
Sbjct: 179 KKGDFIKFIITGDGFLYNMVRIIVGTLIEIGLNKREPEYIKYVIKSKDRTKAGK---CVP 235
Query: 290 PHGLCLVEVKY 300
GLCL EV Y
Sbjct: 236 SSGLCLKEVFY 246
>gi|354559009|ref|ZP_08978261.1| tRNA pseudouridine synthase A [Desulfitobacterium metallireducens
DSM 15288]
gi|353544179|gb|EHC13634.1| tRNA pseudouridine synthase A [Desulfitobacterium metallireducens
DSM 15288]
Length = 245
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 139/250 (55%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L IAYDG+RY GWQ Q TIQ +E L +K+ E + LVG RTD+GVHA
Sbjct: 5 KLTIAYDGSRYKGWQKQKDNDLTIQGKIETVL---SKMTGESILLVGCGRTDSGVHAENY 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
+A+F T + E I L LP DI V+ I FHAR++ KSK Y Y+I D
Sbjct: 62 IANFHTKCALSPNE-IVDYLYEYLPEDIVVKSIDEIAERFHARYNVKSKTYVYRINTDKF 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
D F R Y YH KLN M+ A+E +G HDF +F N++ D+ + ++++ ++ E
Sbjct: 121 RDVFNRKYTYHLADKLNLREMKSASEVLIGTHDFQSFTNLKSRDK--STIRTINYINIGE 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
LL++EV G+GFL+ VR +V LL++GK + P V KIL + R E A
Sbjct: 179 QDGLLEIEVNGNGFLWNMVRIIVGTLLEVGKGNLKPSDVEKILNEKKRWEAGPL---AQA 235
Query: 291 HGLCLVEVKY 300
GL L +V+Y
Sbjct: 236 KGLFLKDVQY 245
>gi|170756303|ref|YP_001783087.1| tRNA pseudouridine synthase A [Clostridium botulinum B1 str. Okra]
gi|429245536|ref|ZP_19208916.1| tRNA pseudouridine synthase A [Clostridium botulinum CFSAN001628]
gi|169121515|gb|ACA45351.1| tRNA pseudouridine synthase A [Clostridium botulinum B1 str. Okra]
gi|428757422|gb|EKX79914.1| tRNA pseudouridine synthase A [Clostridium botulinum CFSAN001628]
Length = 246
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 138/251 (54%), Gaps = 11/251 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPP--TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+L + YDG Y GWQ Q + T+Q +EKA+ +TK E + ++GASRTD+GVHA G
Sbjct: 5 KLKLEYDGANYCGWQKQKNEKFITLQGTLEKAISNITK---EKIEVIGASRTDSGVHAKG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
+ +F T E++ +N LPPDI V A EFH+RF +K K Y Y + N +
Sbjct: 62 YICNFFTNTKIPP-ENLQKVINNNLPPDIVVLSSEEASSEFHSRFCSKGKTYEYTVLNSS 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
R+Y + KLN M+ A+ YF+G HDFSAF + + V+++ +F++
Sbjct: 121 QPIAIGRNYIFQFKDKLNIDNMKMASRYFIGTHDFSAFKT--KGSSIKTSVRTISKFEIN 178
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G ++ + G GFLY VR MV L++IG P+ + ++ ++DR + K P
Sbjct: 179 KKGDFIKFIITGDGFLYNMVRIMVGTLIEIGLNKREPEYIKYVIKSKDRTKAGK---CVP 235
Query: 290 PHGLCLVEVKY 300
GLCL EV Y
Sbjct: 236 SSGLCLKEVFY 246
>gi|448236447|ref|YP_007400505.1| tRNA pseudouridine synthase [Geobacillus sp. GHH01]
gi|445205289|gb|AGE20754.1| tRNA pseudouridine synthase [Geobacillus sp. GHH01]
Length = 258
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/254 (39%), Positives = 147/254 (57%), Gaps = 8/254 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +IAYDGT ++G+Q Q T+Q E+ L R+ K + +R+ + RTD GVHA+GQV
Sbjct: 6 KCIIAYDGTHFSGYQIQPGKRTVQGEFEEVLRRMHKGTK--VRVAASGRTDAGVHAYGQV 63
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF T S E ALN LP DI VR + A +FHARFSAK+K Y YK++ A
Sbjct: 64 IHFDTSLSLSS-EQWKKALNAQLPDDIVVRFVQEADADFHARFSAKAKEYRYKVWTAAER 122
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+RHY Y L+ + M +A G HDF++F + + + + + V++++R +V
Sbjct: 123 DVFRRHYCAWHPYSLHISAMNEALGLLHGTHDFTSFCSAKTS--IEDRVRTMYRAEVKAD 180
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G +L+ GSGFLY VR +V +L+IG+ P + +LA +DR+ LA +AP
Sbjct: 181 GPMLEFRFVGSGFLYNMVRIIVGTVLEIGQGKRSPADISMLLAAKDRR-LA--GPTAPAE 237
Query: 292 GLCLVEVKYNEEHL 305
GL L V Y +E L
Sbjct: 238 GLYLWRVYYEDECL 251
>gi|329942480|ref|ZP_08291290.1| tRNA pseudouridine synthase A [Chlamydophila psittaci Cal10]
gi|332287117|ref|YP_004422018.1| tRNA pseudouridine synthase A [Chlamydophila psittaci 6BC]
gi|384450263|ref|YP_005662863.1| tRNA pseudouridine synthase A [Chlamydophila psittaci 6BC]
gi|384451268|ref|YP_005663866.1| tRNA pseudouridine synthase A [Chlamydophila psittaci 01DC11]
gi|384452244|ref|YP_005664841.1| tRNA pseudouridine synthase A [Chlamydophila psittaci 08DC60]
gi|384453218|ref|YP_005665814.1| tRNA pseudouridine synthase A [Chlamydophila psittaci C19/98]
gi|384454196|ref|YP_005666791.1| tRNA pseudouridine synthase A [Chlamydophila psittaci 02DC15]
gi|392376370|ref|YP_004064148.1| putative tRNA pseudouridine synthase a [Chlamydophila psittaci RD1]
gi|406591982|ref|YP_006739162.1| tRNA pseudouridine synthase A [Chlamydia psittaci CP3]
gi|406594329|ref|YP_006741314.1| tRNA pseudouridine synthase A [Chlamydia psittaci MN]
gi|407453652|ref|YP_006732760.1| tRNA pseudouridine synthase A [Chlamydia psittaci 84/55]
gi|407454984|ref|YP_006733875.1| tRNA pseudouridine synthase A [Chlamydia psittaci GR9]
gi|407456353|ref|YP_006734926.1| tRNA pseudouridine synthase A [Chlamydia psittaci VS225]
gi|407460334|ref|YP_006738109.1| tRNA pseudouridine synthase A [Chlamydia psittaci WC]
gi|410858147|ref|YP_006974087.1| putative tRNA pseudouridine synthase a [Chlamydia psittaci 01DC12]
gi|449070810|ref|YP_007437890.1| tRNA pseudouridine synthase A [Chlamydophila psittaci Mat116]
gi|313847713|emb|CBY16703.1| putative tRNA pseudouridine synthase a [Chlamydophila psittaci RD1]
gi|325507334|gb|ADZ18972.1| tRNA pseudouridine synthase A [Chlamydophila psittaci 6BC]
gi|328815390|gb|EGF85378.1| tRNA pseudouridine synthase A [Chlamydophila psittaci Cal10]
gi|328914357|gb|AEB55190.1| tRNA pseudouridine synthase A [Chlamydophila psittaci 6BC]
gi|334691999|gb|AEG85218.1| tRNA pseudouridine synthase A [Chlamydophila psittaci C19/98]
gi|334692978|gb|AEG86196.1| tRNA pseudouridine synthase A [Chlamydophila psittaci 01DC11]
gi|334693953|gb|AEG87170.1| tRNA pseudouridine synthase A [Chlamydophila psittaci 02DC15]
gi|334694933|gb|AEG88149.1| tRNA pseudouridine synthase A [Chlamydophila psittaci 08DC60]
gi|405780411|gb|AFS19161.1| tRNA pseudouridine synthase A [Chlamydia psittaci 84/55]
gi|405781527|gb|AFS20276.1| tRNA pseudouridine synthase A [Chlamydia psittaci GR9]
gi|405782761|gb|AFS21509.1| tRNA pseudouridine synthase A [Chlamydia psittaci MN]
gi|405783614|gb|AFS22361.1| tRNA pseudouridine synthase A [Chlamydia psittaci VS225]
gi|405786876|gb|AFS25620.1| tRNA pseudouridine synthase A [Chlamydia psittaci WC]
gi|405787854|gb|AFS26597.1| tRNA pseudouridine synthase A [Chlamydia psittaci CP3]
gi|410811042|emb|CCO01685.1| putative tRNA pseudouridine synthase a [Chlamydia psittaci 01DC12]
gi|449039318|gb|AGE74742.1| tRNA pseudouridine synthase A [Chlamydophila psittaci Mat116]
Length = 268
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 149/250 (59%), Gaps = 10/250 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L++AY GT YAGWQ Q + ++Q ++E +L TK+ + + + + RTD GVHA+GQVA
Sbjct: 6 LLLAYQGTAYAGWQRQPNDLSVQEVIENSL---TKVVGKRIHVTSSGRTDAGVHAFGQVA 62
Query: 113 HFITPF--SYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
HF P + I LN LLP DI +R++ FH+RFSA +K Y Y +
Sbjct: 63 HFPQPDHPRFSQASGIKKMLNALLPKDIVIRDVVLGDDTFHSRFSAIAKEYRYLLTRSPK 122
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
P++R+++Y+ + L T LM++ A+Y +G HDF++F N R+ + ++++F D+++
Sbjct: 123 PLPWERYFSYYPRHHLRTDLMQEGAKYLIGTHDFASFANHGRD--YTSTIRTLFNLDIVD 180
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G + + +G+GFLY+ VRN+V LL I + PP+ + +IL ++R+ K +AP
Sbjct: 181 NGETVTIICKGNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILIQKNRR---KGPPAAPS 237
Query: 291 HGLCLVEVKY 300
+ L L V Y
Sbjct: 238 YALSLYHVCY 247
>gi|407457717|ref|YP_006736022.1| tRNA pseudouridine synthase A [Chlamydia psittaci WS/RT/E30]
gi|405785231|gb|AFS23977.1| tRNA pseudouridine synthase A [Chlamydia psittaci WS/RT/E30]
Length = 268
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 149/250 (59%), Gaps = 10/250 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L++AY GT YAGWQ Q + ++Q ++E +L TK+ + + + + RTD GVHA+GQVA
Sbjct: 6 LLLAYQGTAYAGWQRQPNDLSVQEVIENSL---TKVVGKRIHVTSSGRTDAGVHAFGQVA 62
Query: 113 HFITPF--SYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
HF P + I LN LLP DI +R++ FH+RFSA +K Y Y +
Sbjct: 63 HFPQPDHPRFSQASGIKKMLNALLPKDIVIRDVVLGDDTFHSRFSAIAKEYRYLLKRSPK 122
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
P++R+++Y+ + L T LM++ A+Y +G HDF++F N R+ + ++++F D+++
Sbjct: 123 PLPWERYFSYYPRHHLRTDLMQEGAKYLIGTHDFASFANHGRD--YTSTIRTLFNLDIVD 180
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G + + +G+GFLY+ VRN+V LL I + PP+ + +IL ++R+ K +AP
Sbjct: 181 NGETVTIICKGNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILIQKNRR---KGPPAAPS 237
Query: 291 HGLCLVEVKY 300
+ L L V Y
Sbjct: 238 YALSLYHVCY 247
>gi|296131870|ref|YP_003639117.1| tRNA pseudouridine synthase A [Thermincola potens JR]
gi|296030448|gb|ADG81216.1| tRNA pseudouridine synthase A [Thermincola potens JR]
Length = 246
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/251 (41%), Positives = 145/251 (57%), Gaps = 11/251 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSP--PTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++ I YDGT Y G+Q Q PTIQ +EKAL KL E++ + GA RTD GVHA G
Sbjct: 5 KMTIEYDGTSYHGFQKQADQNLPTIQEALEKAL---RKLTGEEISVTGAGRTDAGVHALG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV +F T S + A LN +LP DI ++ A +FHA+F AK K Y Y I+ND
Sbjct: 62 QVINFYTESSIPTGNFVRA-LNSVLPEDIVAKDAVEAPGDFHAQFWAKKKTYRYTIFNDT 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
V F R Y+ KLN MR+AA + VG+HDFSAF R + +++++R +V
Sbjct: 121 VPSVFYRRYSLFVPCKLNVDNMRKAASFLVGQHDFSAFRAAGSTAR--SSIRTMYRAEVE 178
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G L+ + +E +GFLY VR + LL IG+ + + + I+A+ DR LA + P
Sbjct: 179 QEGELIHVYLEANGFLYNMVRIITGTLLYIGQGKLRVEEMKDIIASGDRT-LA--GPTVP 235
Query: 290 PHGLCLVEVKY 300
P GLCL+ V+Y
Sbjct: 236 PQGLCLMRVEY 246
>gi|62184804|ref|YP_219589.1| tRNA pseudouridine synthase A [Chlamydophila abortus S26/3]
gi|81313017|sp|Q5L6V3.1|TRUA_CHLAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|62147871|emb|CAH63617.1| putative tRNA pseudouridine synthase a [Chlamydophila abortus
S26/3]
Length = 268
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 148/250 (59%), Gaps = 10/250 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
+++AY GT YAGWQ Q + +IQ ++E +L +V + + + + RTD VHA+GQVA
Sbjct: 6 ILLAYQGTAYAGWQRQPNDLSIQEVIENSLAQVVG---KRIPVTSSGRTDAEVHAFGQVA 62
Query: 113 HFITPF--SYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
HF P + SI LN LLP DI +R++ +FH+RFSA +K Y Y +
Sbjct: 63 HFSQPDHPQFSQASSIKKMLNALLPKDIVIRDVVLGDDKFHSRFSAIAKEYRYVLTRSPK 122
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
P++R++AY+ + L T LM++ A+Y +G HDF++F N R+ + ++++F D+++
Sbjct: 123 PLPWERYFAYYPRHHLKTDLMQEGAQYLLGTHDFASFANHGRD--YTSTIRTLFNLDIVD 180
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G + + G+GFLY+ VRN+V LL I + PP+ + +IL ++R++ +AP
Sbjct: 181 HGETVTIICRGNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILMQKNRRQGPP---AAPS 237
Query: 291 HGLCLVEVKY 300
H L L V Y
Sbjct: 238 HALSLYHVCY 247
>gi|152974254|ref|YP_001373771.1| tRNA pseudouridine synthase A [Bacillus cytotoxicus NVH 391-98]
gi|152023006|gb|ABS20776.1| tRNA pseudouridine synthase A [Bacillus cytotoxicus NVH 391-98]
Length = 260
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 145/252 (57%), Gaps = 12/252 (4%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E L +++ +++ ++G SRTD GVHA
Sbjct: 19 YKLTIQYDGGRFKGWQRLGNNDNTIQGKIESVL---SEMIGQEIEIIGCSRTDAGVHALN 75
Query: 110 QVAHFITPFSYDGLES-IHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
QVA+F +E+ + LN LP DI + E+ FHAR+++K+K Y YKI+N+
Sbjct: 76 QVANFKVDEKL--VETKVKKYLNQYLPNDISITEVEQVPERFHARYNSKTKTYLYKIWNE 133
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
+PF R Y+ H KLN M+QAA YF+G HDF+AF N + + + V+ ++ DV
Sbjct: 134 EHTNPFMRKYSMHVPKKLNVENMKQAAHYFIGSHDFTAFSNAKSKKKSM--VREIYVLDV 191
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E +Q+ V G+GFL+ VR +V L+++G + + +P+IL + R ++ A
Sbjct: 192 FESEGFIQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQI---NCLA 248
Query: 289 PPHGLCLVEVKY 300
+GL L +V +
Sbjct: 249 DANGLYLEKVDF 260
>gi|154483152|ref|ZP_02025600.1| hypothetical protein EUBVEN_00853 [Eubacterium ventriosum ATCC
27560]
gi|149735960|gb|EDM51846.1| tRNA pseudouridine synthase A [Eubacterium ventriosum ATCC 27560]
Length = 246
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 145/251 (57%), Gaps = 9/251 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
RL+IAYDGT Y GWQ Q + T++ ++ KAL L E++ ++GASRTD+GVHA G V
Sbjct: 5 RLIIAYDGTNYCGWQVQINGITVEEVLNKAL---KDLLNEEIAVIGASRTDSGVHAMGNV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T E I ALN LP DIR+++ ++H R+ +K Y YKI N
Sbjct: 62 AVFDTETRIPA-EKISFALNQRLPNDIRIQKSDEVPLDWHPRYRDSTKTYEYKILNRRFP 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
DP QR Y + L+ M++AAEY VG+HDF++F + ++ + V++V+ V +
Sbjct: 121 DPLQRFYTHFMYMPLDEQKMKEAAEYIVGEHDFASFCSA--GSQVDSTVRTVYSLSVNKR 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
++ + + G+GFLY VR +V L+++G PP+ V +I+ +DR AP
Sbjct: 179 DDVISIRITGNGFLYNMVRIIVGTLIKVGLGVYPPEHVKEIIEAKDRYVAGP---KAPAC 235
Query: 292 GLCLVEVKYNE 302
GL LV ++Y+E
Sbjct: 236 GLTLVGIEYSE 246
>gi|357039717|ref|ZP_09101509.1| tRNA pseudouridine synthase A [Desulfotomaculum gibsoniae DSM 7213]
gi|355357523|gb|EHG05296.1| tRNA pseudouridine synthase A [Desulfotomaculum gibsoniae DSM 7213]
Length = 247
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/251 (39%), Positives = 139/251 (55%), Gaps = 10/251 (3%)
Query: 52 RLVIAYDGTRYAGWQFQ--TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+L +AYDGT Y G+Q Q T T+Q ++E L R L +++ GA RTD GVHA G
Sbjct: 5 KLTVAYDGTNYHGFQEQRGTGLATVQEVLELCLGR---LAGRRVQVTGAGRTDAGVHALG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV +F +E I A+NGLLP D+ V E +FHARFSA++KIY Y I+N+
Sbjct: 62 QVVNFDAAGWPIPVERIPLAMNGLLPGDVVVTEAREVGQDFHARFSARAKIYRYTIWNNR 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ PF R Y+ LN M QA ++ +G+HDF F + V++++R +VI
Sbjct: 122 IPSPFNRLYSSFWPVPLNDEAMSQACDHLLGRHDFKCF--QASGATVKTTVRTLYRAEVI 179
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
G L+ +G GFLY VR M LLQ+G PD + +L ++ R A+ + P
Sbjct: 180 REGTLVHFVFKGDGFLYNMVRIMTGTLLQVGMGKASPDSIRNLLESRQR---AQAGPTMP 236
Query: 290 PHGLCLVEVKY 300
P GLCL V+Y
Sbjct: 237 PQGLCLEHVEY 247
>gi|304315974|ref|YP_003851119.1| tRNA pseudouridine synthase A [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|433654133|ref|YP_007297841.1| pseudouridylate synthase I [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|302777476|gb|ADL68035.1| tRNA pseudouridine synthase A [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|433292322|gb|AGB18144.1| pseudouridylate synthase I [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 248
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 143/248 (57%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
LVI YDGT Y GWQ Q + TIQ + KA+ ++T ED+ L+G+SRTD GVHA QVA
Sbjct: 10 LVIEYDGTNYHGWQIQKNVVTIQETITKAIKKIT---NEDVDLIGSSRTDAGVHALHQVA 66
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T + I ALN +LP DI +++ A +FH+R+SAK K Y Y IYN
Sbjct: 67 NFKTCTNIP-TSKIPNALNSVLPADIVIKDAFEADMDFHSRYSAKGKRYKYIIYNRRFSS 125
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P ++Y++H L+ MR++ +Y G HDFSAF + +PV++V + + G
Sbjct: 126 PILKNYSWHISKSLDVEKMRESLKYLEGTHDFSAF--KASGSSVKSPVRTVRDISLKKNG 183
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
++ E+E GFLY VR +V ++ +G I P V +IL +++R K +APP G
Sbjct: 184 FNVEFEIEADGFLYNMVRIIVGTIVDVGLGKINPIDVKEILDSKNRCMAGK---TAPPQG 240
Query: 293 LCLVEVKY 300
L L ++ Y
Sbjct: 241 LFLTKIYY 248
>gi|385267176|ref|ZP_10045263.1| pseudouridylate synthase I [Bacillus sp. 5B6]
gi|385151672|gb|EIF15609.1| pseudouridylate synthase I [Bacillus sp. 5B6]
Length = 247
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 138/250 (55%), Gaps = 7/250 (2%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ IAYDG + G+Q Q T+Q +EKAL + K + + + + RTD+ VHA GQV
Sbjct: 4 KCTIAYDGHLFNGYQVQPGKRTVQSELEKALAVIHKTDGR-VPVYSSGRTDSDVHAAGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF T S E ALN LLP DI V+ A FHARFSA K Y Y +Y +
Sbjct: 63 IHFDTSLSIPA-EKWPFALNALLPDDIAVKTAEIADDGFHARFSAVQKEYRYIVYTEKHP 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+YAYH Y+LN MR+A+ + +G HDF++F + + + V++++ D E
Sbjct: 122 DVFKRYYAYHFAYQLNVQKMREASRHLIGTHDFTSFCAA--DTAVQDKVRTIYELDWTET 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G LQ+ + G+GFLY VR + LL G PD V +L +DR+ + +AP H
Sbjct: 180 GDGLQMRITGNGFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGR---TAPGH 236
Query: 292 GLCLVEVKYN 301
GL L V Y+
Sbjct: 237 GLYLWSVCYD 246
>gi|168178866|ref|ZP_02613530.1| tRNA pseudouridine synthase A [Clostridium botulinum NCTC 2916]
gi|226950899|ref|YP_002805990.1| tRNA pseudouridine synthase A [Clostridium botulinum A2 str. Kyoto]
gi|182670055|gb|EDT82031.1| tRNA pseudouridine synthase A [Clostridium botulinum NCTC 2916]
gi|226843785|gb|ACO86451.1| tRNA pseudouridine synthase A [Clostridium botulinum A2 str. Kyoto]
Length = 246
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 139/251 (55%), Gaps = 11/251 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPP--TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+L + YDG Y GWQ Q + T+Q +EKA+ +TK E + ++GASRTD+GVHA G
Sbjct: 5 KLKLEYDGANYCGWQKQKNEKFITLQGTLEKAISNITK---EKIEVIGASRTDSGVHAKG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
+ +F T E++ +N LPPDI V A EFH+RF +K K Y Y + N +
Sbjct: 62 YICNFFTNTKIPP-ENLQKVINNNLPPDIVVLSSEEASSEFHSRFCSKGKTYEYTVLNSS 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
R+Y + KLN M+ A+ YF+G HDFSAF + + V+++ +F++
Sbjct: 121 KPIAIGRNYIFQFKDKLNIDNMKMASRYFIGTHDFSAFKT--KGSSIKTSVRTISKFEIN 178
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G ++ + G GFLY VR +V L++IG P+ + ++ ++DR++ K P
Sbjct: 179 KKGDFIKFIITGDGFLYNMVRIIVGTLIEIGLNKREPEYIKYVIKSKDRRKAGK---CVP 235
Query: 290 PHGLCLVEVKY 300
GLCL EV Y
Sbjct: 236 SSGLCLKEVFY 246
>gi|438001157|ref|YP_007270900.1| tRNA pseudouridine synthase A [Tepidanaerobacter acetatoxydans Re1]
gi|432177951|emb|CCP24924.1| tRNA pseudouridine synthase A [Tepidanaerobacter acetatoxydans Re1]
Length = 256
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 144/249 (57%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
++++ Y+GT Y+GWQ Q + +IQ ++E A+ +T E + ++G+ RTD GVHA GQV
Sbjct: 17 KILLEYEGTAYSGWQRQKNAISIQEVLENAIKSITG---EAVNVIGSGRTDAGVHALGQV 73
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F T +E + A+N LP DI V+ +FHARF AK+KIY Y IYN
Sbjct: 74 ANFKTQTKIP-IEKLPYAINSKLPEDIVVKHAEIVPEDFHARFWAKAKIYTYTIYNAKFP 132
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P + Y+Y LN M++AA+ +G HDF++F + N + + V+ + R +V +
Sbjct: 133 SPLLKRYSYFYPRPLNVRAMKKAADMLIGTHDFASF--MASNSPVKSTVRCIERLEVFQN 190
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G +++ E+E +GFLY VR + LL +G + + I+ ++DR K + PP
Sbjct: 191 GDIVKFEIEANGFLYNMVRIIAGTLLDVGINKKKANDIISIIKSKDRSMAGK---TLPPQ 247
Query: 292 GLCLVEVKY 300
GLCL++V Y
Sbjct: 248 GLCLIKVIY 256
>gi|332798239|ref|YP_004459738.1| tRNA pseudouridine synthase A [Tepidanaerobacter acetatoxydans Re1]
gi|332695974|gb|AEE90431.1| tRNA pseudouridine synthase A [Tepidanaerobacter acetatoxydans Re1]
Length = 243
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 144/249 (57%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
++++ Y+GT Y+GWQ Q + +IQ ++E A+ +T E + ++G+ RTD GVHA GQV
Sbjct: 4 KILLEYEGTAYSGWQRQKNAISIQEVLENAIKSITG---EAVNVIGSGRTDAGVHALGQV 60
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F T +E + A+N LP DI V+ +FHARF AK+KIY Y IYN
Sbjct: 61 ANFKTQTKIP-IEKLPYAINSKLPEDIVVKHAEIVPEDFHARFWAKAKIYTYTIYNAKFP 119
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P + Y+Y LN M++AA+ +G HDF++F + N + + V+ + R +V +
Sbjct: 120 SPLLKRYSYFYPRPLNVRAMKKAADMLIGTHDFASF--MASNSPVKSTVRCIERLEVFQN 177
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G +++ E+E +GFLY VR + LL +G + + I+ ++DR K + PP
Sbjct: 178 GDIVKFEIEANGFLYNMVRIIAGTLLDVGINKKKANDIISIIKSKDRSMAGK---TLPPQ 234
Query: 292 GLCLVEVKY 300
GLCL++V Y
Sbjct: 235 GLCLIKVIY 243
>gi|166154677|ref|YP_001654795.1| tRNA pseudouridine synthase A [Chlamydia trachomatis 434/Bu]
gi|166155552|ref|YP_001653807.1| tRNA pseudouridine synthase A [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|301335947|ref|ZP_07224191.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L2tet1]
gi|339626142|ref|YP_004717621.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L2c]
gi|238687386|sp|B0B836.1|TRUA_CHLT2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|238687485|sp|B0BCA1.1|TRUA_CHLTB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|165930665|emb|CAP04162.1| tRNA pseudouridine synthase A [Chlamydia trachomatis 434/Bu]
gi|165931540|emb|CAP07116.1| tRNA pseudouridine synthase A [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|339460521|gb|AEJ77024.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L2c]
gi|440526272|emb|CCP51756.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L2b/8200/07]
gi|440536097|emb|CCP61610.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L2b/795]
gi|440536990|emb|CCP62504.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L1/440/LN]
gi|440537879|emb|CCP63393.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L1/1322/p2]
gi|440538769|emb|CCP64283.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L1/115]
gi|440539658|emb|CCP65172.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L1/224]
gi|440540550|emb|CCP66064.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L2/25667R]
gi|440541438|emb|CCP66952.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L3/404/LN]
gi|440542325|emb|CCP67839.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L2b/UCH-2]
gi|440543216|emb|CCP68730.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L2b/Canada2]
gi|440544107|emb|CCP69621.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L2b/LST]
gi|440544997|emb|CCP70511.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L2b/Ams1]
gi|440545887|emb|CCP71401.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L2b/CV204]
gi|440914149|emb|CCP90566.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L2b/Ams2]
gi|440915039|emb|CCP91456.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L2b/Ams3]
gi|440915930|emb|CCP92347.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L2b/Canada1]
gi|440916825|emb|CCP93242.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L2b/Ams4]
gi|440917715|emb|CCP94132.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L2b/Ams5]
Length = 267
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 144/250 (57%), Gaps = 10/250 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L IAY GT Y+GWQ+Q + +IQ +++ L ++ + ++ + RTD GVHA GQ+A
Sbjct: 7 LQIAYQGTSYSGWQYQPNALSIQEVLKTILKKIAGFR---ISVISSGRTDAGVHAQGQIA 63
Query: 113 HFITPFS--YDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
HF P + I LN LLP DI +R+ +FH+RFSA +K Y Y +
Sbjct: 64 HFHCPDHPHFTDPRQIQKMLNALLPHDIVIRDAVMTDGDFHSRFSAIAKEYRYTLSLLPK 123
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
P R + + YKLN M++AA+Y VG HDF++F N+ R + +++++ D+ E
Sbjct: 124 PLPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGRE--YSSTIRTLYTLDLSE 181
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
L+ + G+GFLY+ VRN+V LL IGK PP+ + +LAT+DR+ K SAPP
Sbjct: 182 QEHLVTVICRGNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRR---KGPPSAPP 238
Query: 291 HGLCLVEVKY 300
+GL L V Y
Sbjct: 239 YGLSLHHVCY 248
>gi|259502563|ref|ZP_05745465.1| tRNA pseudouridine synthase A [Lactobacillus antri DSM 16041]
gi|259169515|gb|EEW54010.1| tRNA pseudouridine synthase A [Lactobacillus antri DSM 16041]
Length = 256
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 149/257 (57%), Gaps = 8/257 (3%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+++++ AYDG ++G+Q Q T++ +++ A+ ++ K + ++G+ RTD GVHA
Sbjct: 2 YRYKITFAYDGANFSGFQIQPHKRTVEQVLKNAVNKIAKHPDPPVSVIGSGRTDAGVHAL 61
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
QVAHF P+ E++ ALN LLP DI V++ FHAR+SA K Y Y++
Sbjct: 62 NQVAHFDIPYQLSD-EAMRKALNSLLPLDILVKKAERVDENFHARYSAHRKTYRYRVDQG 120
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
+DPF+R+Y H ++ MR AA+ F+G+HDF++F V + + V++V + V
Sbjct: 121 DFVDPFKRNYTAHYKVPVDIEKMRLAAKDFIGEHDFTSF--VASGSQAKSNVRTVEKITV 178
Query: 229 IEMGALLQL--EVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
A ++ E G+GFLY Q+R MVA LL++G P V ++LA +DR + +
Sbjct: 179 NRDPAQNEVVFEFTGNGFLYNQIRIMVAFLLEVGSGQRPVSDVKRVLAAKDRTQA---RM 235
Query: 287 SAPPHGLCLVEVKYNEE 303
+AP GL LV V Y +E
Sbjct: 236 TAPASGLYLVSVDYGDE 252
>gi|403237135|ref|ZP_10915721.1| tRNA pseudouridine synthase A [Bacillus sp. 10403023]
Length = 245
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 144/251 (57%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG RY GWQ TIQ +E L T+L E + ++G+ RTD GVHA
Sbjct: 4 YKLTIQYDGGRYKGWQRLGNGDNTIQGKIENVL---TELAGEKIEIIGSGRTDAGVHALA 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
Q+A+F + + E +H LN LP DI V +++ FHAR++AK K Y YKI+N+
Sbjct: 61 QIANFKMRKNANEDEVMHY-LNRYLPNDISVVDVTLVHDRFHARYNAKDKTYLYKIWNEQ 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
PF R Y+ H KL+ MR+A+ YF+GKHDF+++ N + + + V+ ++ ++
Sbjct: 120 YTHPFMRKYSMHVEEKLDIEKMRKASHYFLGKHDFTSYSNAKSKKKSM--VREIYSLEIN 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ ++++V G+GFLY VR +V L+++G I +P IL +++R + + A
Sbjct: 178 KNEGFIEIKVRGNGFLYNMVRKIVGTLIEVGLGEIDATAIPSILESKERIQTGRM---AD 234
Query: 290 PHGLCLVEVKY 300
GL L +V +
Sbjct: 235 AEGLYLEKVGF 245
>gi|402838873|ref|ZP_10887374.1| tRNA pseudouridine(38-40) synthase [Eubacteriaceae bacterium OBRC8]
gi|402271887|gb|EJU21119.1| tRNA pseudouridine(38-40) synthase [Eubacteriaceae bacterium OBRC8]
Length = 245
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 141/249 (56%), Gaps = 11/249 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L ++YDGT Y GWQ Q + +IQ +EKA+ +T RED L+ + RTD+GVHA GQV
Sbjct: 6 LKVSYDGTNYCGWQKQNNAVSIQQTLEKAISNIT---REDTELIASGRTDSGVHALGQVC 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T + + A+N LP DIRV E F+ARFSAK K Y Y+IYN + +
Sbjct: 63 NFKTSSNIPS-QKFAYAINSKLPKDIRVIESKEVDFSFNARFSAKKKTYMYRIYNSEMAN 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
PF Y+ KL+ LM + +G +D+++F + N+ NPV++++ D+ +
Sbjct: 122 PFYYKYSMQVAKKLDMDLMSKNVNMLIGTYDWTSFYTYETNNP-KNPVRTIYSADISKNN 180
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA-LSAPPH 291
++ E+EG+GFLY VR +V L+ IG DI +I+ +DR YA +A P
Sbjct: 181 DMITFEIEGNGFLYNMVRIIVGTLIDIGLHKNERDI-KQIIEKKDR----LYAGATAKPQ 235
Query: 292 GLCLVEVKY 300
GL L EV Y
Sbjct: 236 GLFLKEVCY 244
>gi|452972629|gb|EME72458.1| tRNA pseudouridine synthase A [Bacillus sonorensis L12]
Length = 247
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 146/253 (57%), Gaps = 7/253 (2%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+ + I+YDG + G+Q Q T+Q +E+AL + K +E + +V + RTD+GVHA
Sbjct: 1 MRMKCTISYDGHLFYGYQVQPGQRTVQDELERALKTLHK-SKERIPVVASGRTDSGVHAV 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQ HF T S + +A LN LLP DI V + A +FHARFSAK K Y Y IY
Sbjct: 60 GQTIHFDTQLSIPETKWPYA-LNALLPDDIAVTKAEAVDDQFHARFSAKKKEYRYMIYRG 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
++ F+RHYAYH Y+L+ ++ +AA++ VG HDF++F + + + V++++ +
Sbjct: 119 RHLNVFKRHYAYHVPYELDLQMVEKAAQHLVGTHDFTSFCTAKTE--VKDKVRTIYELEW 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E LQ+ + GSGFLY VR + LL +G PD + K++A ++R + +A
Sbjct: 177 SETEDGLQMRIVGSGFLYNMVRIIAGTLLDVGTGKFLPDDIEKMIAAKNRDAAGR---TA 233
Query: 289 PPHGLCLVEVKYN 301
P HGL L V Y+
Sbjct: 234 PAHGLYLWNVIYD 246
>gi|225570923|ref|ZP_03779946.1| hypothetical protein CLOHYLEM_07027 [Clostridium hylemonae DSM
15053]
gi|225160385|gb|EEG73004.1| hypothetical protein CLOHYLEM_07027 [Clostridium hylemonae DSM
15053]
Length = 282
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 105/281 (37%), Positives = 154/281 (54%), Gaps = 12/281 (4%)
Query: 23 KQGVGVVGLEGTNNTVKPPTDDSFPGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKAL 82
K+G G + L GT K P + RLVIAYDGT Y GWQ Q + TI+ ++ L
Sbjct: 13 KKGTGQIQL-GTEEIEKNPVP-KISQRRIRLVIAYDGTDYCGWQIQPNGITIEEVLNGVL 70
Query: 83 IRVTKLEREDLRLVGASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVRE 142
TKL ED+ ++GASRTD+GVHA G VA F T S E + ALN LP DI +
Sbjct: 71 ---TKLTGEDIHVIGASRTDSGVHALGNVAVFDTASSIPP-ERMAYALNQRLPKDIVIVR 126
Query: 143 ISAAVPEFHARF-SAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGK 201
+H R+ K Y Y IYN V +P +R + H + LN MR+ A+Y +G+
Sbjct: 127 SDEVPAGWHPRYRDVVIKTYEYHIYNAPVQNPLKRRTSTHISFPLNVEKMREGAKYLIGE 186
Query: 202 HDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGK 261
HDF++F NV+ + + + V++V + G + + + G+GFLY VR + L+++G+
Sbjct: 187 HDFASFCNVRTS--VKDTVRTVTELRIDSDGPEIIMRITGNGFLYNMVRIIAGTLIRVGR 244
Query: 262 EAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEVKYNE 302
P+ V +IL ++R ++ PP+GL LVE+ Y E
Sbjct: 245 GFYEPEKVKEILEAKER---TGAGVTVPPNGLVLVEIDYGE 282
>gi|392948176|ref|ZP_10313791.1| tRNA pseudouridine synthase A [Lactobacillus pentosus KCA1]
gi|392436621|gb|EIW14530.1| tRNA pseudouridine synthase A [Lactobacillus pentosus KCA1]
Length = 262
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 151/261 (57%), Gaps = 12/261 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++V+AYDGT +AG+Q Q T++ ++ KA+ ++ K + + + GA RTD GVHA+G
Sbjct: 4 RYKVVLAYDGTNFAGFQRQPHQRTVEQVLTKAVNKMAKDPDDPIVIYGAGRTDAGVHAFG 63
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
Q HF P+ E + LN +LP D+ ++ +S P+FHAR+ K Y Y+ Y +
Sbjct: 64 QTLHFDLPYEIKP-EGVRRGLNSMLPTDMIIKAVSIVAPDFHARYDTVGKRYWYRAYQNE 122
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRND--RLLNPVKSVFR 225
+DPF+RHY H + + ++QA G+HDFS FV Q +D R + K+
Sbjct: 123 FVDPFKRHYTGHFKFHADIDRIQQAIGDLEGRHDFSTFVASGSQAHDHVREIYSAKAWAL 182
Query: 226 FDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
D E +Q E GSGFLY QVR MVA+L++IG+ D +P +LAT+DR++
Sbjct: 183 PDEDE----IQFEFCGSGFLYNQVRIMVAVLMEIGQGRRSVDCIPALLATKDREQARG-- 236
Query: 286 LSAPPHGLCLVEVKYNEEHLR 306
+AP GL + +V Y + L+
Sbjct: 237 -TAPAAGLYMKKVYYEQNELQ 256
>gi|297528514|ref|YP_003669789.1| tRNA pseudouridine synthase A [Geobacillus sp. C56-T3]
gi|297251766|gb|ADI25212.1| tRNA pseudouridine synthase A [Geobacillus sp. C56-T3]
Length = 258
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/254 (39%), Positives = 146/254 (57%), Gaps = 8/254 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +IAYDGT ++G+Q Q T+Q E+ L R+ K + +R+ + RTD GVHA+GQV
Sbjct: 6 KCIIAYDGTHFSGYQIQPGKRTVQGEFEEVLRRMHKGTK--VRVAASGRTDAGVHAYGQV 63
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF T S E ALN LP DI VR + A +FHARFSAK+K Y YK++ A
Sbjct: 64 IHFDTSLSLSS-EQWKKALNAQLPDDIVVRFVQEADADFHARFSAKAKEYRYKVWTAAER 122
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+RHY Y L+ + M +A G HDF++F + + + + V++++R +V
Sbjct: 123 DVFRRHYCAWHPYSLHISAMNEALRLLHGTHDFTSFCSAK--TLIEDRVRTMYRAEVKAD 180
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G +L+ GSGFLY VR +V +L+IG+ P + +LA +DR+ LA +AP
Sbjct: 181 GPMLEFRFVGSGFLYNMVRIIVGTVLEIGQGKRSPADISMLLAAKDRR-LA--GPTAPAE 237
Query: 292 GLCLVEVKYNEEHL 305
GL L V Y +E L
Sbjct: 238 GLYLWRVYYEDECL 251
>gi|406593093|ref|YP_006740272.1| tRNA pseudouridine synthase A [Chlamydia psittaci NJ1]
gi|405788965|gb|AFS27707.1| tRNA pseudouridine synthase A [Chlamydia psittaci NJ1]
Length = 268
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 149/250 (59%), Gaps = 10/250 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L++AY GT YAGWQ Q + ++Q ++E +L TK+ + + + + RTD GVHA+GQVA
Sbjct: 6 LLLAYQGTAYAGWQRQPNDLSVQEVIENSL---TKVVGKRIHVTSSGRTDAGVHAFGQVA 62
Query: 113 HFITPF--SYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
HF P + I LN LLP DI +R++ FH+RFSA +K Y Y +
Sbjct: 63 HFPQPDHPRFSQASGIKKMLNALLPKDIVIRDVVLGDDIFHSRFSAIAKEYRYLLTRSPK 122
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
P++R+++Y+ + L T LM++ A+Y +G HDF++F N R+ + ++++F D+++
Sbjct: 123 PLPWERYFSYYPRHHLRTDLMQEGAKYLIGTHDFASFANHGRD--YTSTIRTLFNLDIVD 180
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G + + +G+GFLY+ VRN+V LL I + PP+ + +IL ++R+ K +AP
Sbjct: 181 NGETVTIICKGNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILIQKNRR---KGPPAAPS 237
Query: 291 HGLCLVEVKY 300
+ L L V Y
Sbjct: 238 YALSLYHVCY 247
>gi|336435341|ref|ZP_08615056.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 1_4_56FAA]
gi|336000794|gb|EGN30940.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 1_4_56FAA]
Length = 257
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 148/256 (57%), Gaps = 13/256 (5%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ +L +AYDGT Y GWQ Q + T++ ++ +AL +T + + ++GASRTD+GVHA G
Sbjct: 3 RIKLTVAYDGTNYCGWQVQPNGITVEEVLNRALSALTGTK---VNVIGASRTDSGVHARG 59
Query: 110 QVAHFIT--PFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
VA F T P D I A+N LP DI V + ++H R+ K Y Y I N
Sbjct: 60 NVAIFDTDSPIPPD---RISYAVNQKLPDDIVVVKSEEVPKDWHPRYQNSVKTYEYHILN 116
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
+ DP +R+ Y Y L+ MR+AA Y VG+HDF++F N+ + + + V++++
Sbjct: 117 ARMPDPTRRYTTYFVSYHLDLEQMRKAAGYLVGEHDFASFCNIHTD--VEDTVRTIYELT 174
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V + G L + V G+GFLY VR + LLQ+G+ P+ V IL T+DR+ ++
Sbjct: 175 VEKSGEDLTIRVRGNGFLYNMVRIIAGTLLQVGRGFYTPEDVRGILETKDRESA---GVT 231
Query: 288 APPHGLCLVEVKYNEE 303
APPHGL L+ ++Y ++
Sbjct: 232 APPHGLMLMRIEYEKD 247
>gi|312870517|ref|ZP_07730636.1| tRNA pseudouridine synthase A [Lactobacillus oris PB013-T2-3]
gi|417886814|ref|ZP_12530958.1| tRNA pseudouridine synthase A [Lactobacillus oris F0423]
gi|311093979|gb|EFQ52304.1| tRNA pseudouridine synthase A [Lactobacillus oris PB013-T2-3]
gi|341593205|gb|EGS36062.1| tRNA pseudouridine synthase A [Lactobacillus oris F0423]
Length = 256
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 147/254 (57%), Gaps = 8/254 (3%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+++++ AYDG ++G+Q Q T++ +++ A+ ++ K + ++G+ RTD GVHA
Sbjct: 2 YRYKITFAYDGANFSGFQIQPHKRTVEQVLKNAVNKIAKYPDPPISVIGSGRTDAGVHAL 61
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
QVAHF P+ ES+ ALN LLP DI V++ FHAR+SA K Y Y++
Sbjct: 62 NQVAHFDLPYQLSD-ESMRKALNSLLPLDILVKKAERVDESFHARYSAHRKTYRYRVDQG 120
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
+DPF+R+Y H ++ MR AA+ F+G+HDF++F V + + V++V + V
Sbjct: 121 DFVDPFKRNYTAHYKVPVDIDKMRLAAKDFIGEHDFTSF--VASGSQAKSNVRTVEKITV 178
Query: 229 IEMGALLQL--EVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
A ++ E G+GFLY Q+R MVA LL++G P V ++LA +DR + +
Sbjct: 179 DRDPAQNEVVFEFTGNGFLYNQIRIMVAFLLEVGSGQRPVSDVKRVLAAKDRTQA---RM 235
Query: 287 SAPPHGLCLVEVKY 300
+AP GL LV V Y
Sbjct: 236 TAPASGLYLVSVDY 249
>gi|355626486|ref|ZP_09048761.1| hypothetical protein HMPREF1020_02840 [Clostridium sp. 7_3_54FAA]
gi|354820806|gb|EHF05211.1| hypothetical protein HMPREF1020_02840 [Clostridium sp. 7_3_54FAA]
Length = 341
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 147/255 (57%), Gaps = 11/255 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ +L +AYDGT Y GWQ Q + TI+ ++ KAL T L +E + ++GASRTD+GVHA G
Sbjct: 3 RIKLTVAYDGTAYCGWQIQPNGVTIEEVLNKAL---TGLLKEPVTVIGASRTDSGVHARG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVP-EFHARFSAKSKIYHYKIYND 168
VA F T G + I ALN LP DIRV + S VP FH R + +K Y YKI N
Sbjct: 60 NVAVFDTESRIPG-DKICFALNQRLPDDIRV-QASEEVPLSFHPRKANCTKTYEYKILNR 117
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
+ P +R Y++ + L+ M+QAA + VG+HDF +F V+ V++++ DV
Sbjct: 118 KISMPLERLYSHFCYFNLDVEKMKQAAAFLVGEHDFKSFCTVRTQAE--ETVRTIYSLDV 175
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ G ++ + + GSGFLY VR + L+++G PP+ + +IL +DR +
Sbjct: 176 SKDGDMITIRISGSGFLYNMVRIITGTLVKVGLGVYPPEHMEEILEARDRSAAGP---TI 232
Query: 289 PPHGLCLVEVKYNEE 303
P GL LV ++Y +E
Sbjct: 233 PAIGLTLVSLEYEKE 247
>gi|76789199|ref|YP_328285.1| tRNA pseudouridine synthase A [Chlamydia trachomatis A/HAR-13]
gi|123606852|sp|Q3KLN5.1|TRUA_CHLTA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|76167729|gb|AAX50737.1| tRNA pseudouridine synthase A [Chlamydia trachomatis A/HAR-13]
Length = 267
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 144/253 (56%), Gaps = 10/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
K L IAY GT Y+GWQ+Q + +IQ ++E L ++ + ++ + RTD GVHA G
Sbjct: 4 KIVLQIAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFR---ISVISSGRTDAGVHAQG 60
Query: 110 QVAHFITPFS--YDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
Q+AHF P + I LN LLP DI + + +FH+RFSA +K Y Y +
Sbjct: 61 QIAHFHCPDHPHFTDPRQIQKMLNALLPHDIVIHDAVMTDGDFHSRFSAIAKEYRYTLSL 120
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
P R + + YKLN M++AA+Y VG HDF++F N+ R + +++++ D
Sbjct: 121 LPKPLPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGRE--YSSTIRTLYTLD 178
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ E L+ + G+GFLY+ VRN+V LL IGK PP+ + +LAT+DR+ K S
Sbjct: 179 LSEQEHLVTVICRGNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRR---KGPPS 235
Query: 288 APPHGLCLVEVKY 300
APP+GL L V Y
Sbjct: 236 APPYGLSLHHVCY 248
>gi|323483257|ref|ZP_08088647.1| tRNA pseudouridine synthase A [Clostridium symbiosum WAL-14163]
gi|323691247|ref|ZP_08105522.1| pseudouridylate synthase [Clostridium symbiosum WAL-14673]
gi|323403355|gb|EGA95663.1| tRNA pseudouridine synthase A [Clostridium symbiosum WAL-14163]
gi|323504587|gb|EGB20374.1| pseudouridylate synthase [Clostridium symbiosum WAL-14673]
Length = 341
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 147/255 (57%), Gaps = 11/255 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ +L +AYDGT Y GWQ Q + TI+ ++ KAL T L +E + ++GASRTD+GVHA G
Sbjct: 3 RIKLTVAYDGTAYCGWQIQPNGVTIEEVLNKAL---TGLLKEPVTVIGASRTDSGVHARG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVP-EFHARFSAKSKIYHYKIYND 168
VA F T G + I ALN LP DIRV + S VP FH R + +K Y YKI N
Sbjct: 60 NVAVFDTESRIPG-DKICFALNQRLPDDIRV-QASEEVPLSFHPRKANCTKTYEYKILNR 117
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
+ P +R Y++ + L+ M+QAA + VG+HDF +F V+ V++++ DV
Sbjct: 118 KISMPLERLYSHFCYFNLDVEKMKQAAAFLVGEHDFKSFCTVRTQAE--ETVRTIYSLDV 175
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ G ++ + + GSGFLY VR + L+++G PP+ + +IL +DR +
Sbjct: 176 SKDGDMITIRISGSGFLYNMVRIITGTLVKVGLGVYPPEHMEEILEARDRSAAGP---TI 232
Query: 289 PPHGLCLVEVKYNEE 303
P GL LV ++Y +E
Sbjct: 233 PAVGLTLVSLEYEKE 247
>gi|452994614|emb|CCQ93719.1| tRNA pseudouridine synthase A [Clostridium ultunense Esp]
Length = 256
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 142/258 (55%), Gaps = 9/258 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
K +++AYDGTRY G+Q Q++ PTIQ +E+AL R L + + GA RTD VHA G
Sbjct: 6 KMAMIVAYDGTRYYGFQRQSTLPTIQERLEEALFR---LHQRKTGVTGAGRTDARVHATG 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF+T E AL LP DI++R FHAR+SA K Y Y+I
Sbjct: 63 QVIHFMTDLRIPP-ERWPYALQAFLPEDIQIRAAYPVEDSFHARYSAVGKRYRYRIDRGK 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ + F R+YA H Y L +++A+ + +G+HDFSAF + N +++++ V+
Sbjct: 122 MRNLFTRNYALHYPYPLEIDKIKEASSFLLGRHDFSAF--AASGSSVKNHIRTLYDIQVV 179
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E+G LQ G GFLY VR +V LL++G + K+L + DR K ++ P
Sbjct: 180 EVGDELQFTFWGDGFLYNMVRILVGTLLEVGGGRRDVKEIVKLLRSGDR---TKAGITVP 236
Query: 290 PHGLCLVEVKYNEEHLRL 307
PHGL L EV Y E RL
Sbjct: 237 PHGLTLEEVLYPEGTFRL 254
>gi|421834688|ref|ZP_16269660.1| tRNA pseudouridine synthase A [Clostridium botulinum CFSAN001627]
gi|409743837|gb|EKN42645.1| tRNA pseudouridine synthase A [Clostridium botulinum CFSAN001627]
Length = 246
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 138/251 (54%), Gaps = 11/251 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPP--TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+L + YDG Y GWQ Q + T+Q +EKA+ +TK E + ++GASRTD+GVHA G
Sbjct: 5 KLKLEYDGANYCGWQKQKNEKFITLQGTLEKAISNITK---EKIEVIGASRTDSGVHAKG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
+ +F T E++ +N LPPDI V A EFH+RF +K K Y Y + N +
Sbjct: 62 YICNFFTNTKIPP-ENLQKVINNNLPPDIVVLSSEEASSEFHSRFCSKGKTYEYTVLNSS 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
R+Y + KLN M+ A+ YF+G HDFSAF + + V+++ +F++
Sbjct: 121 KPIAIGRNYIFQFKDKLNIDNMKMASRYFIGTHDFSAFKT--KGSSIKTSVRTISKFEIN 178
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G ++ + G GFLY VR +V L++IG P+ + ++ ++DR + K P
Sbjct: 179 KKGDFIKFIITGDGFLYNMVRIIVGTLIEIGLNKREPEYIKYVIKSKDRTKAGK---CVP 235
Query: 290 PHGLCLVEVKY 300
GLCL EV Y
Sbjct: 236 SSGLCLKEVFY 246
>gi|326203861|ref|ZP_08193723.1| tRNA pseudouridine synthase A [Clostridium papyrosolvens DSM 2782]
gi|325985959|gb|EGD46793.1| tRNA pseudouridine synthase A [Clostridium papyrosolvens DSM 2782]
Length = 245
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 96/252 (38%), Positives = 143/252 (56%), Gaps = 10/252 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
K +++I YDGT Y GWQ Q + T+Q V+KA ++KL E + + G SRTD GVHA+G
Sbjct: 3 KIKIIIEYDGTNYHGWQVQKNAKTVQETVQKA---ISKLLGEGVGVTGCSRTDVGVHAYG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVAHF+T G + A+N LLP DI ++ EFHAR+S K K Y Y IYN
Sbjct: 60 QVAHFLTDSQIPG-DKFSYAINNLLPDDIVIKHSEEVSEEFHARYSTKGKKYRYLIYNAP 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
R+ + H L+ M++AA YF+G+HDF+AF ++ + V+ ++ +V
Sbjct: 119 HPSAIMRNRSCHVRPVLDIEQMKKAARYFIGEHDFAAFQAT--GGQVRSTVREIYSMEVS 176
Query: 230 -EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ ++ +EV G+GFLY VR + L+ +G + +P I+A DR + K +A
Sbjct: 177 GKEDNMIYIEVSGNGFLYNMVRIIAGTLIYVGMGKLQESEIPGIIAGLDRTKSGK---TA 233
Query: 289 PPHGLCLVEVKY 300
P GL L+E+ Y
Sbjct: 234 PAQGLYLMEIYY 245
>gi|91200879|emb|CAJ73934.1| strongly similar to tRNA pseudouridine synthase I [Candidatus
Kuenenia stuttgartiensis]
Length = 244
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 148/249 (59%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
RL I Y+GT YAGWQ+Q + ++Q + A+ V RE++ + GA RTD GVHA GQV
Sbjct: 5 RLTIEYEGTNYAGWQWQKNAISVQETLTHAVRTVI---REEVEIHGAGRTDAGVHALGQV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F T +S + + A+N LP DI +++++ FHAR+SA SK+Y Y + ND +
Sbjct: 62 ANFKT-YSAIPAKQLLRAINFHLPQDITIKDVADMEEGFHARYSATSKVYRYTVLNDWLR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
R++ Y + L+ + M AA+Y +G HDF++F +++ + ++++ ++ +
Sbjct: 121 TSLNRNFCYVYGFPLDLSKMMTAAQYLIGTHDFTSFTTKALDNK--DRIRTIKNLEIQKE 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G + VE +GFLY+ VR +V LL+IG+ + ++ K+L T +R + +AP
Sbjct: 179 GKYIYFVVEANGFLYKMVRTIVGTLLEIGRGKMDVYLIRKLLETGNRDDAGP---TAPAK 235
Query: 292 GLCLVEVKY 300
GLC+ EVKY
Sbjct: 236 GLCMKEVKY 244
>gi|197302933|ref|ZP_03167984.1| hypothetical protein RUMLAC_01661 [Ruminococcus lactaris ATCC
29176]
gi|197298014|gb|EDY32563.1| tRNA pseudouridine synthase A [Ruminococcus lactaris ATCC 29176]
Length = 297
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 140/251 (55%), Gaps = 9/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ RL +AYDGT Y GWQ Q + TI+ + L T+L + ++++GASRTD GVHA G
Sbjct: 28 RIRLTVAYDGTDYCGWQVQNNVATIEGELNTVL---TQLTGQTVKVIGASRTDAGVHARG 84
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
VA F T S E A+N LLP DI V + ++H R K Y Y++ N
Sbjct: 85 NVAVFDTESSIPP-ERFLYAVNALLPEDIVVVDSCEVAADWHPRHCNTEKTYEYRVLNQK 143
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ DP +R Y + L+ MRQAA Y G+HDF +F NV + + + V++++R +VI
Sbjct: 144 LPDPMRRRDTYFVSFPLDLERMRQAAGYLEGEHDFKSFCNVHTH--VEDTVRTIYRLEVI 201
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
++ V G+GFLY VR + L+ +G+ I P+ +P +L +DR+ ++ P
Sbjct: 202 REENVITFRVRGNGFLYNMVRILAGTLIGVGRGLIDPEEIPAMLEAKDRQ---AAGMTVP 258
Query: 290 PHGLCLVEVKY 300
P GL L+++ Y
Sbjct: 259 PQGLTLMKIDY 269
>gi|387819728|ref|YP_005680075.1| tRNA pseudouridine synthase A [Clostridium botulinum H04402 065]
gi|322807772|emb|CBZ05347.1| tRNA pseudouridine synthase A [Clostridium botulinum H04402 065]
Length = 246
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 138/251 (54%), Gaps = 11/251 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPP--TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+L + YDG Y GWQ Q + T+Q +EKA+ +TK E + ++GASRTD+GVHA G
Sbjct: 5 KLKLEYDGANYCGWQKQKNEKFITLQGTLEKAISNITK---EKIEVIGASRTDSGVHAKG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
+ +F T E++ +N LPPDI V A EFH+RF +K K Y Y + N +
Sbjct: 62 YICNFFTNTKIPP-ENLQKVINNNLPPDIVVLSSEEASSEFHSRFCSKGKTYEYTVLNSS 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
R+Y + KLN M+ A+ YF+G HDFSAF + + V+++ +F++
Sbjct: 121 QPIAIGRNYIFQFKDKLNIDNMKMASRYFIGTHDFSAFKT--KGSSIKTSVRTISKFEIN 178
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G ++ + G GFLY VR +V L++IG P+ + ++ ++DR + K P
Sbjct: 179 KKGDFIKFIITGDGFLYNMVRIIVGTLIEIGLNKRKPEYIKYVIKSKDRTKAGK---CVP 235
Query: 290 PHGLCLVEVKY 300
GLCL EV Y
Sbjct: 236 SSGLCLKEVFY 246
>gi|363890016|ref|ZP_09317364.1| tRNA pseudouridine synthase A [Eubacteriaceae bacterium CM5]
gi|361966114|gb|EHL19055.1| tRNA pseudouridine synthase A [Eubacteriaceae bacterium CM5]
Length = 245
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 142/249 (57%), Gaps = 11/249 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L ++YDGT Y GWQ Q + +IQ +EKA+ +T RED+ L+ + RTD+GVHA GQV
Sbjct: 6 LKVSYDGTNYCGWQKQNNAVSIQQTLEKAISDIT---REDIELIASGRTDSGVHALGQVC 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T + + A+N LP DIRV E F+ARF+AK K Y Y+IYN +
Sbjct: 63 NFKTGSNIPS-QKFAYAINSKLPKDIRVIESKEVDFAFNARFTAKKKTYMYRIYNSEISS 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
PF Y+ KL+ LM + + +G +D+++F + N+ NPV++++ D+++
Sbjct: 122 PFYYKYSMQVAQKLDMDLMSKNVKMLIGTYDWTSFYTYETNNP-KNPVRTIYSADILKNS 180
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA-LSAPPH 291
++ E+EG+GFLY VR +V L+ IG DI +I+ +DR YA +A
Sbjct: 181 DMITFEIEGNGFLYNMVRIIVGTLIDIGLNKNERDI-KRIIEKKDR----SYAGATAKSQ 235
Query: 292 GLCLVEVKY 300
GL L EV Y
Sbjct: 236 GLFLKEVCY 244
>gi|363892466|ref|ZP_09319633.1| tRNA pseudouridine synthase A [Eubacteriaceae bacterium CM2]
gi|361964072|gb|EHL17125.1| tRNA pseudouridine synthase A [Eubacteriaceae bacterium CM2]
Length = 245
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 140/249 (56%), Gaps = 11/249 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L ++YDGT Y GWQ Q + +IQ +EKA+ +T RED L+ + RTD+GVHA GQV
Sbjct: 6 LKVSYDGTNYCGWQKQNNAVSIQQTLEKAISNIT---REDTELIASGRTDSGVHALGQVC 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T + + A+N LP DIRV E F+ARF+AK K Y Y+IYN +
Sbjct: 63 NFKTSSNIPS-QKFAYAINSKLPKDIRVVETKEVDFAFNARFTAKKKTYMYRIYNSEISS 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
PF Y+ KL+ LM + +G +D+++F + N+ NPV++++ D+ +
Sbjct: 122 PFYYKYSMQVAKKLDMDLMSKNVNMLIGTYDWTSFYTYETNNP-KNPVRTIYSADISKNN 180
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA-LSAPPH 291
++ E+EG+GFLY VR +V L+ IG DI +I+ +DR YA +A P
Sbjct: 181 DMITFEIEGNGFLYNMVRIIVGTLIDIGLHKNERDI-KQIIEKKDR----LYAGATAKPQ 235
Query: 292 GLCLVEVKY 300
GL L EV Y
Sbjct: 236 GLFLKEVCY 244
>gi|357055030|ref|ZP_09116108.1| tRNA pseudouridine synthase A [Clostridium clostridioforme
2_1_49FAA]
gi|355383730|gb|EHG30807.1| tRNA pseudouridine synthase A [Clostridium clostridioforme
2_1_49FAA]
Length = 247
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/253 (39%), Positives = 150/253 (59%), Gaps = 12/253 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ RLV+AYDGT+Y GWQ Q TI+ ++ +AL T+L RE ++++GASRTD+GVHA G
Sbjct: 3 RIRLVVAYDGTQYHGWQIQPGAVTIESVLNEAL---TQLMREPIQVIGASRTDSGVHARG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVP-EFHARFSAKSKIYHYKIYND 168
VA F T S + I ALN LP DIRV ++S VP ++H R K Y Y+I N
Sbjct: 60 NVAVFDTE-SQMPPDKICMALNQRLPEDIRV-QVSEEVPSDWHPRKCTCVKTYEYRILNR 117
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
+ P +R Y++ YKL+ M+ AA G+HDF +F +V+ ++ + V++V++ DV
Sbjct: 118 RINMPMERLYSHFCYYKLDVDRMQAAANMLAGEHDFKSFCSVR--TQVTDTVRTVYKIDV 175
Query: 229 IEM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
++ + V G+GFLY VR + L+ +G I + +P IL +DR+ +
Sbjct: 176 ERNDNDIITIRVTGNGFLYNMVRIIAGTLMAVGTGHIQAEDMPSILEAKDRRAAGP---T 232
Query: 288 APPHGLCLVEVKY 300
AP GL L+E+KY
Sbjct: 233 APARGLTLIEMKY 245
>gi|288554758|ref|YP_003426693.1| tRNA pseudouridine synthase A [Bacillus pseudofirmus OF4]
gi|288545918|gb|ADC49801.1| tRNA pseudouridine synthase A [Bacillus pseudofirmus OF4]
Length = 247
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 140/249 (56%), Gaps = 8/249 (3%)
Query: 54 VIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAH 113
+I+YDGT ++G+Q Q + T+Q +E+AL RV K +++ + + RTD GVHA GQV H
Sbjct: 7 IISYDGTNFSGYQVQPNKRTVQLEIEQALKRVHK--GQEVSVTASGRTDAGVHAKGQVIH 64
Query: 114 FITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDP 173
F +PF + ALN LP DIRV A +FHAR+ K Y Y++ N D
Sbjct: 65 FDSPFRIPAAQ-WPKALNACLPDDIRVLSAHYAEKDFHARYHTTGKEYRYRVLNAEDPDV 123
Query: 174 FQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGA 233
F+RH+ H +Y L+ MRQAA Y +G HDFSAF N +++ V++++ D+
Sbjct: 124 FRRHHTAHVLYALDIDKMRQAAAYLIGTHDFSAFCAA--NTSVIDKVRTLYAVDINVHED 181
Query: 234 LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGL 293
L + G+GFLY VR +V LL++G + V L T R + K +APP GL
Sbjct: 182 ELHFILRGNGFLYNMVRIIVGTLLEVGYGKRTAESVDTALRTCKRDDAGK---TAPPQGL 238
Query: 294 CLVEVKYNE 302
L V+YN+
Sbjct: 239 YLWSVQYND 247
>gi|338733687|ref|YP_004672160.1| tRNA pseudouridine synthase A 2 [Simkania negevensis Z]
gi|336483070|emb|CCB89669.1| tRNA pseudouridine synthase A 2 [Simkania negevensis Z]
Length = 247
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 148/249 (59%), Gaps = 8/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+++YDG+ Y GWQ +I+ +++ L K+ +++++L ASRTD GVHA QV
Sbjct: 6 KLILSYDGSAYLGWQASNVGVSIEGTLKEVL---EKILQQEVQLQAASRTDAGVHAEAQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
+F + LE +H +LN LLP DIRV + A +FH +K K YHY++ V
Sbjct: 63 VNFFLEKPRN-LEHLHKSLNQLLPKDIRVAIVEEAPDDFHPTLKSKGKEYHYRLTRSHVQ 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
PF R +A+H + L+ M A ++F+GKHDF AF N + + + +++++R D+I
Sbjct: 122 LPFDRLFAWHYPFSLDLAKMETATKFFIGKHDFQAFGNAA-DPKPKDTIRTLYRLDIISS 180
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L+ E+ G+ FLY+ VRN+V L+ IG + + K++A++DR LA ++AP H
Sbjct: 181 EEELRFEIHGNNFLYKMVRNLVGTLVYIGAGKLSLEEAEKLIASKDRT-LA--GMTAPAH 237
Query: 292 GLCLVEVKY 300
GL L +V Y
Sbjct: 238 GLLLKKVFY 246
>gi|365157295|ref|ZP_09353569.1| tRNA pseudouridine synthase A [Bacillus smithii 7_3_47FAA]
gi|363625441|gb|EHL76480.1| tRNA pseudouridine synthase A [Bacillus smithii 7_3_47FAA]
Length = 247
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 92/252 (36%), Positives = 141/252 (55%), Gaps = 8/252 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ + VI+YDG+ +AG+Q Q + T+Q +E AL + K E +++ + RTD GVHA G
Sbjct: 3 RMKCVISYDGSGFAGYQIQPAKRTVQSEIESALKVLHK--GEAVKVTASGRTDAGVHARG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF T + + LN + P DI ++ A FHARFSA K Y Y++Y
Sbjct: 61 QVIHFDTSLPIPETKWVQV-LNSIFPEDIAAIQVEAVDDAFHARFSATGKEYRYRLYTTP 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
DP +R YAYH Y LN M +AA Y G HDF++F + + + + V+++ + ++
Sbjct: 120 HRDPLKRFYAYHFPYSLNIEAMEEAARYLTGTHDFTSFCSAKTE--VKDKVRTIRKIAIV 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G + ++ G+GFLY VR +V LL+ G P+ +P+IL +DR + K + P
Sbjct: 178 QEGEEIVFQLVGNGFLYNMVRIIVGTLLECGTGKRSPEEIPEILEAKDRSKAGK---TVP 234
Query: 290 PHGLCLVEVKYN 301
P GL L V Y+
Sbjct: 235 PEGLYLWNVFYD 246
>gi|229159574|ref|ZP_04287588.1| tRNA pseudouridine synthase A 2 [Bacillus cereus R309803]
gi|228623876|gb|EEK80688.1| tRNA pseudouridine synthase A 2 [Bacillus cereus R309803]
Length = 250
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 144/255 (56%), Gaps = 14/255 (5%)
Query: 49 FKWRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHA 107
+ ++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 7 YNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHA 63
Query: 108 WGQVAHFITPFSYDGL--ESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKI 165
Q+A+F + + L + LN LP DI + + FHAR+++K+K Y YKI
Sbjct: 64 LNQIANFQSD---EKLVEHKVKKYLNQYLPNDISITNVEEVHERFHARYNSKAKTYLYKI 120
Query: 166 YNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFR 225
+N+ +PF R Y+ H KLN M+QAA++ VG HDF+AF N + + + V+ V+
Sbjct: 121 WNEEHTNPFMRKYSMHVNKKLNVESMKQAAKHLVGSHDFTAFSNAKSKKKSM--VREVYT 178
Query: 226 FDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
DV+E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++
Sbjct: 179 LDVMEEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEGKQRNQI---N 235
Query: 286 LSAPPHGLCLVEVKY 300
A GL L V++
Sbjct: 236 CLAEASGLYLENVEF 250
>gi|255655803|ref|ZP_05401212.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-23m63]
gi|296450959|ref|ZP_06892706.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP08]
gi|296879075|ref|ZP_06903071.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP07]
gi|296260177|gb|EFH07025.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP08]
gi|296429948|gb|EFH15799.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP07]
Length = 245
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 148/250 (59%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
++++AYDG+RY G+Q + TIQ +E L +K+ E + ++G+ RTD G HA GQ
Sbjct: 5 KMIVAYDGSRYKGYQKLGDNNMTIQEKLENVL---SKMTNETVEIIGSGRTDMGAHARGQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
V +F T D L+ I L LP DI V+ + FH+R++ KSK Y Y+I N+
Sbjct: 62 VVNFRTN-CMDSLDKIQKYLYEYLPEDIVVKAVEEVDERFHSRYNVKSKTYMYRIDNNKY 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
+PF R YA H KL+ MR+A+EY VG+HDF++F + + + + V+ ++ ++ E
Sbjct: 121 HNPFIRKYATHVSKKLDLDRMRKASEYLVGEHDFTSFASSKS--KKKSNVREIYSINIKE 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
++++ VEG+GFLY VR +V L+ +G + P + +L ++DR + + +AP
Sbjct: 179 DDNIIEIYVEGNGFLYNMVRIIVGALIDVGLKRRAPQDIKYMLESRDR---CQSSDTAPA 235
Query: 291 HGLCLVEVKY 300
GLCL +V+Y
Sbjct: 236 KGLCLWKVRY 245
>gi|126699393|ref|YP_001088290.1| tRNA pseudouridine synthase A [Clostridium difficile 630]
gi|254975421|ref|ZP_05271893.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-66c26]
gi|255092808|ref|ZP_05322286.1| tRNA pseudouridine synthase A [Clostridium difficile CIP 107932]
gi|255100921|ref|ZP_05329898.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-63q42]
gi|255306811|ref|ZP_05350982.1| tRNA pseudouridine synthase A [Clostridium difficile ATCC 43255]
gi|255314550|ref|ZP_05356133.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-76w55]
gi|255517225|ref|ZP_05384901.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-97b34]
gi|255650331|ref|ZP_05397233.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-37x79]
gi|260683444|ref|YP_003214729.1| tRNA pseudouridine synthase A [Clostridium difficile CD196]
gi|260687040|ref|YP_003218173.1| tRNA pseudouridine synthase A [Clostridium difficile R20291]
gi|306520297|ref|ZP_07406644.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-32g58]
gi|384361061|ref|YP_006198913.1| tRNA pseudouridine synthase A [Clostridium difficile BI1]
gi|423083748|ref|ZP_17072278.1| tRNA pseudouridine synthase A [Clostridium difficile 002-P50-2011]
gi|423088200|ref|ZP_17076583.1| tRNA pseudouridine synthase A [Clostridium difficile 050-P50-2011]
gi|423091504|ref|ZP_17079625.1| tRNA pseudouridine synthase A [Clostridium difficile 70-100-2010]
gi|115250830|emb|CAJ68654.1| Pseudouridylate synthase (tRNA pseudouridine synthase A)
[Clostridium difficile 630]
gi|260209607|emb|CBA63265.1| tRNA pseudouridine synthase 2 [Clostridium difficile CD196]
gi|260213056|emb|CBE04418.1| tRNA pseudouridine synthase 2 [Clostridium difficile R20291]
gi|357542772|gb|EHJ24807.1| tRNA pseudouridine synthase A [Clostridium difficile 050-P50-2011]
gi|357544508|gb|EHJ26512.1| tRNA pseudouridine synthase A [Clostridium difficile 002-P50-2011]
gi|357554986|gb|EHJ36679.1| tRNA pseudouridine synthase A [Clostridium difficile 70-100-2010]
Length = 245
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 92/250 (36%), Positives = 147/250 (58%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
++++AYDG+RY G+Q + TIQ +E L +K+ E + ++G+ RTD G HA GQ
Sbjct: 5 KMIVAYDGSRYKGYQKLGDNNMTIQEKLENVL---SKMTNETVEIIGSGRTDMGAHARGQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
V +F T D L+ I L LP DI V+ + FH+R++ KSK Y YKI N+
Sbjct: 62 VVNFRTN-CMDSLDKIQKYLYEYLPEDIVVKTVEEVDERFHSRYNVKSKTYMYKIDNNKY 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
+PF R YA H KL+ MR+A+EY VG+HDF++F + + + + V+ ++ ++ E
Sbjct: 121 HNPFIRKYATHVSKKLDLDRMRKASEYLVGEHDFTSFASSKS--KKKSNVREIYSINIKE 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
++++ VEG+GFLY VR +V L+ +G + P + +L ++DR + + +AP
Sbjct: 179 DDNVIEIYVEGNGFLYNMVRIIVGALIDVGLKRRAPQDIKYMLESKDR---CQSSDTAPA 235
Query: 291 HGLCLVEVKY 300
GLCL +V Y
Sbjct: 236 KGLCLWKVTY 245
>gi|28212149|ref|NP_783093.1| tRNA pseudouridine synthase A [Clostridium tetani E88]
gi|38258761|sp|Q890R5.1|TRUA2_CLOTE RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 2; AltName: Full=tRNA-uridine
isomerase I 2
gi|28204593|gb|AAO37030.1| tRNA pseudouridine synthase A [Clostridium tetani E88]
Length = 248
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 96/252 (38%), Positives = 139/252 (55%), Gaps = 11/252 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSP--PTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
RL + YDGT Y+GWQ Q TIQ +EKA+ TK E++ L+G+SRTD GVHA
Sbjct: 6 RLKVEYDGTNYSGWQKQKDKNIKTIQSSIEKAIEEATK---EEVELIGSSRTDAGVHALA 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
A+F T + G E ALN LP DI + E EFH+RF K Y YKI N
Sbjct: 63 YTANFKTCSTIPG-EKFKHALNRFLPEDIVILESEEVPMEFHSRFDCIGKTYVYKILNRP 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ P QR+Y YH +L+ M +A+++ +G HDF+AF N L V+++ +++
Sbjct: 122 LFSPIQRNYIYHVKDELDINSMIEASKFLIGTHDFNAFKKSGGN--LKTTVRTITNINIL 179
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ ++++ V G GFLY VR + L+++G P+ + IL ++DR K + AP
Sbjct: 180 KSNDIVEIHVSGDGFLYNMVRIISGTLIEVGLSRRKPEDISIILQSKDR---CKAGMCAP 236
Query: 290 PHGLCLVEVKYN 301
GL L E+ YN
Sbjct: 237 ARGLYLKELFYN 248
>gi|229083731|ref|ZP_04216052.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-44]
gi|228699589|gb|EEL52253.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-44]
Length = 268
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++ I YDG RY GWQ + TIQ +E L +++ +++ ++G SRTD GVHA
Sbjct: 27 YKFTIQYDGARYKGWQRLGNNDNTIQGKIESVL---SEMVGQEIEIIGCSRTDAGVHALN 83
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + LN LP DI + ++ FHAR+++K+K Y YKI+N+
Sbjct: 84 QVANFKIEEKLSE-PKVKKYLNQYLPNDISITDVEQVPERFHARYNSKAKTYLYKIWNEE 142
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA+Y +G HDF+AF N + + + V+ V+ DV
Sbjct: 143 HTNPFMRKYSMHVQKKLNIESMQKAAQYLIGSHDFTAFSNAKSKKKSM--VREVYMLDVA 200
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + D +P+IL + R ++ A
Sbjct: 201 ESEGFIQIRVSGNGFLHNMVRKIVGALVEVGLGQLDADAIPQILEAKQRNQI---NCLAD 257
Query: 290 PHGLCLVEVKY 300
GL L +V +
Sbjct: 258 ASGLYLEKVDF 268
>gi|160894723|ref|ZP_02075498.1| hypothetical protein CLOL250_02274 [Clostridium sp. L2-50]
gi|156863657|gb|EDO57088.1| tRNA pseudouridine synthase A [Clostridium sp. L2-50]
Length = 245
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 144/251 (57%), Gaps = 9/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ +LV+AYDGT Y GWQ Q + TI+ ++ + +++L +ED++++GASRTD GVHA G
Sbjct: 3 RVKLVVAYDGTNYHGWQVQDNGITIEEVLNRT---ISELVQEDIKVIGASRTDAGVHACG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
VA F T G + ALN LP DIR++E +FH R++ K Y Y I N
Sbjct: 60 NVAVFDTESRIPG-DKFSFALNQRLPDDIRIQESCEVDADFHPRYADTVKTYEYNILNRR 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
P +R YA Y ++ M QAA Y VG+HDF +F + ++ V++++ +V
Sbjct: 119 FEMPSKRLYAAFCYYPMDIERMNQAAAYLVGEHDFKSFCSA--GAQVQTTVRTIYAVNVT 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ ++ + + G+GFLY VR + L+Q+G + P+ V +IL +DR +K +A
Sbjct: 177 KEDDMVHIRITGNGFLYNMVRIIAGTLMQVGTGLMEPERVKEILEARDR---SKAGPTAV 233
Query: 290 PHGLCLVEVKY 300
GL LVE++Y
Sbjct: 234 AKGLTLVEIRY 244
>gi|423556593|ref|ZP_17532896.1| tRNA pseudouridine synthase A 2 [Bacillus cereus MC67]
gi|401194867|gb|EJR01835.1| tRNA pseudouridine synthase A 2 [Bacillus cereus MC67]
Length = 245
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 139/253 (54%), Gaps = 14/253 (5%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG RY GWQ + TIQ +E + + E E ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARYKGWQRLGNNDNTIQGKIESIISEMVGKETE---IIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGL--ESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
QVA+F + + L + LN LP DI + + FHAR+++K+K Y YKI+N
Sbjct: 61 QVANFQSD---EKLVEHKVKKYLNQYLPNDISITSVEEVPDRFHARYNSKAKTYLYKIWN 117
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
+ +PF R Y+ H +LN M++AA++ VG HDF+AF N + + + V+ V+ D
Sbjct: 118 EEHTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLD 175
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V E +Q+ V G+GFL+ VR +V L+++G + D +P IL + R ++
Sbjct: 176 VFEESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLEADAIPNILEEKQRNQI---NCL 232
Query: 288 APPHGLCLVEVKY 300
A GL L VK+
Sbjct: 233 AEASGLYLENVKF 245
>gi|339498019|ref|ZP_08658995.1| tRNA pseudouridine synthase A [Leuconostoc pseudomesenteroides KCTC
3652]
Length = 256
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 96/260 (36%), Positives = 151/260 (58%), Gaps = 13/260 (5%)
Query: 50 KWRLVIAYDGTRYAGWQFQT-----SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTG 104
+++ ++AYDGT + G+Q QT S T+Q + K + ++ K + +++VGASRTDTG
Sbjct: 3 RYKAIVAYDGTDFFGFQLQTKNGVESARTVQGELNKVVNQMAKKPQPPIKVVGASRTDTG 62
Query: 105 VHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYK 164
VHA+GQV HF P+ ++ LN LLP D+ V+ ++ +FHARF+ +K Y Y+
Sbjct: 63 VHAFGQVVHFDFPYDI-ASDNFRKGLNTLLPRDVLVKSVTRVSDDFHARFNTHAKRYIYR 121
Query: 165 IYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF 224
I DPF+RHY H + L+ M+ A F+G+HDF++F + V+ +
Sbjct: 122 ISTLDYTDPFKRHYTGHFHWHLDVDRMKSALPDFIGEHDFASF--AASGNETATTVRRIT 179
Query: 225 RFDVIEMGA--LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELA 282
R ++ E L L EG+ FLY Q+R MV +LL+IG P + +++A +DR E A
Sbjct: 180 RVELTEKAEEHELVLVFEGNAFLYNQIRIMVGVLLEIGTGRRPVHDIQRLIAVKDR-EQA 238
Query: 283 KYALSAPPHGLCLVEVKYNE 302
++ +AP GL L E+ YN+
Sbjct: 239 RF--TAPASGLYLDEISYND 256
>gi|313891575|ref|ZP_07825185.1| tRNA pseudouridine synthase A [Dialister microaerophilus UPII
345-E]
gi|313120034|gb|EFR43216.1| tRNA pseudouridine synthase A [Dialister microaerophilus UPII
345-E]
Length = 244
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 145/251 (57%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQFQT-SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++I YDGTRY GWQ Q S T+Q +EKA +VT E+++++GA RTD+GVHA G
Sbjct: 3 YKMIIEYDGTRYEGWQKQKHSDETLQGKIEKAFEKVTG---ENVQIIGAGRTDSGVHAKG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV + P+ + E++ LN +LP DI +++ + +FH+RF AKSKIY Y + +
Sbjct: 60 QVVNVHLPYDLNA-ENLKNELNEILPDDIYIKQCTEVEEKFHSRFHAKSKIYEYNLRIGS 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
D FQ+ + + L M++AAE G HDF+AF N + + + V++V+ ++
Sbjct: 119 NKDVFQKRFIWQFAKPLCIEKMKRAAEILQGTHDFTAFCNNKNFKK--SAVRTVYSIEIS 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+L L G GFL +R MV L+++G+ D + +L ++ R + +AP
Sbjct: 177 TSNDILHLRFCGDGFLQGMIRIMVGTLVEVGENKRDADSLYDVLKSKQR---SNAGFTAP 233
Query: 290 PHGLCLVEVKY 300
P GL L+ V+Y
Sbjct: 234 PQGLTLISVQY 244
>gi|373859661|ref|ZP_09602387.1| tRNA pseudouridine synthase A [Bacillus sp. 1NLA3E]
gi|372450656|gb|EHP24141.1| tRNA pseudouridine synthase A [Bacillus sp. 1NLA3E]
Length = 245
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 148/253 (58%), Gaps = 12/253 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +AY GTR++G+Q Q + T+Q +EKAL ++ K + + + RTD GVHA G
Sbjct: 3 RYKCKVAYTGTRFSGYQVQPNKRTVQSEIEKALKKIHK--GAHIFINASGRTDAGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV +F + + I ALN +LP DI + ++ EFHARF+A K Y Y ++ A
Sbjct: 61 QVINFDSSLAISEDRWI-IALNSVLPDDISILQVEKVPAEFHARFNAVEKEYRYFLHLSA 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVN--VQRNDRLLNPVKSVFRFD 227
+ DPFQ++++Y Y LN + + A+ + +G HDF++F + ++ DR V+++ + +
Sbjct: 120 IRDPFQQYFSYQYSYSLNYSDIVTASRFLIGTHDFTSFCSAKTEKEDR----VRTIHKLE 175
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ E LL V G+GFLY VR +V LL++G P +P+ILA +DR K +
Sbjct: 176 LFEENGLLVFRVVGNGFLYNMVRILVGTLLEVGNGKRDPYSIPEILAKKDRAAAGK---T 232
Query: 288 APPHGLCLVEVKY 300
AP HGL L EV Y
Sbjct: 233 APAHGLYLWEVLY 245
>gi|150020829|ref|YP_001306183.1| tRNA pseudouridine synthase ACD [Thermosipho melanesiensis BI429]
gi|166229846|sp|A6LLJ7.1|TRUA_THEM4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|149793350|gb|ABR30798.1| tRNA pseudouridine synthase A [Thermosipho melanesiensis BI429]
Length = 244
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 99/244 (40%), Positives = 141/244 (57%), Gaps = 11/244 (4%)
Query: 56 AYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFI 115
+YDGT + G+Q Q + T+Q +EKAL R+ K E + GA RTD GVHA GQVA F
Sbjct: 9 SYDGTNFFGYQGQPNVRTVQGELEKALERIFK---ERIFTQGAGRTDAGVHANGQVAAFN 65
Query: 116 TPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQ 175
P I ALN LP DI V++ F+ RF AK +IYHY + + D F+
Sbjct: 66 CPIDRLAAIDIKNALNANLPEDIYVKKAWEVEKNFNPRFRAKKRIYHYLVSTNE-KDVFK 124
Query: 176 RHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGA-L 234
R+Y +H YKLN MR AA Y G+HDFS+F ++ + NP+++V+R ++ + L
Sbjct: 125 RNYVWHFKYKLNIEAMRIAARYLEGEHDFSSF---KKGNDKKNPIRTVYRIRILNVKKEL 181
Query: 235 LQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLC 294
+ + VEG FL VRN+V L+++G P+ + K+L + R+E A +APPHGL
Sbjct: 182 ILIRVEGRSFLRSMVRNIVGSLVRVGLGQWTPEKIKKVLEARSRQEAAG---TAPPHGLY 238
Query: 295 LVEV 298
L +V
Sbjct: 239 LYKV 242
>gi|390629491|ref|ZP_10257485.1| Pseudouridine synthase [Weissella confusa LBAE C39-2]
gi|390485127|emb|CCF29833.1| Pseudouridine synthase [Weissella confusa LBAE C39-2]
Length = 249
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 146/253 (57%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDGT + GWQ Q T+Q +EK + ++ K E +R+ G+ RTD VHA G
Sbjct: 3 RYKATISYDGTEFYGWQVQPGKRTVQLEMEKVVNKMAKDPTEHIRVQGSGRTDARVHAKG 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF PF E++ L+ +LP DI ++ + FHA+FSA +K Y Y++
Sbjct: 63 QVVHFDLPFDIPN-EAVRKGLSTMLPYDIGIKSVEKVDESFHAQFSAHNKTYLYRLSTTE 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+DPF+R+Y H +++T+LM+QA +VG+HD+ +FV + V++V+ +
Sbjct: 122 FIDPFKRNYTGHWHRRIDTSLMQQAIGDYVGEHDWLSFVASGFQQK--TTVRTVYSAKMW 179
Query: 230 EM--GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E + E G+GFLY Q+R MV +LL+IG + P D + ++ A +DR++ +
Sbjct: 180 EKPEEDEIWFEFSGNGFLYNQIRIMVGVLLEIGNGSRPVDDIQRLFAVKDRQQA---RFT 236
Query: 288 APPHGLCLVEVKY 300
AP GL L+ V Y
Sbjct: 237 APAQGLYLMSVDY 249
>gi|189220286|ref|YP_001940926.1| pseudouridylate synthase [Methylacidiphilum infernorum V4]
gi|259550415|sp|B3E0A0.1|TRUA_METI4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|189187144|gb|ACD84329.1| Pseudouridylate synthase [Methylacidiphilum infernorum V4]
Length = 255
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 101/250 (40%), Positives = 142/250 (56%), Gaps = 8/250 (3%)
Query: 51 WRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
++L ++Y G+ + GWQ Q PT+Q +E+A V K+ E + + GA RTD GVHA GQ
Sbjct: 8 YKLTLSYCGSGFHGWQRQGELPTVQRALEEA---VAKIWEEPIPVEGAGRTDAGVHAKGQ 64
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA F P + E + ALN LP +RV + EF ARF A SK Y Y ++ND V
Sbjct: 65 VASFAAPRKLEP-EVLKRALNYHLPDTVRVWDARIVPREFSARFDAVSKTYQYLLWNDPV 123
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
MDPF A+H ++ +M +AA F+GKH+F+AFV+ + NPV++V +E
Sbjct: 124 MDPFYLGRAWHIPRAMDVEMMNEAARLFLGKHNFAAFVS-NPGMPVKNPVRTVLDCFFLE 182
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G+L+ V+ GFLYR VRNMV L+++G + + KI Q R E +APP
Sbjct: 183 QGSLVFFNVKADGFLYRMVRNMVGALVKVGLGRLSRQELKKIFENQKRIEAFA---AAPP 239
Query: 291 HGLCLVEVKY 300
GL L+ V Y
Sbjct: 240 WGLYLLAVDY 249
>gi|329121886|ref|ZP_08250501.1| tRNA pseudouridine synthase A [Dialister micraerophilus DSM 19965]
gi|327467824|gb|EGF13316.1| tRNA pseudouridine synthase A [Dialister micraerophilus DSM 19965]
Length = 244
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 145/251 (57%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQFQT-SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++I YDGTRY GWQ Q S T+Q +EKA +VT E+++++GA RTD+GVHA G
Sbjct: 3 YKMIIEYDGTRYEGWQKQKHSDETLQGKIEKAFEKVTG---ENVQIIGAGRTDSGVHAKG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+ P+ + E++ LN +LP DI +++ +FH+RF AKSKIY Y + +
Sbjct: 60 QVANVHLPYDLNA-ENLKNELNEILPDDIYIKQCIEVEEKFHSRFHAKSKIYEYNLRIGS 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
D FQ+ + + L M++AAE G HDF+AF N + + + V++V+ ++
Sbjct: 119 NKDVFQKRFIWQFAKPLCIEKMKRAAEILQGTHDFTAFCNNKHFKK--SAVRTVYSIEIS 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+L L G GFL +R MV L+++G+ D + +L ++ R + +AP
Sbjct: 177 TSNDILHLRFCGDGFLQGMIRIMVGTLVEVGENKRDADSLYDVLKSKQR---SNAGFTAP 233
Query: 290 PHGLCLVEVKY 300
P GL L+ V+Y
Sbjct: 234 PQGLTLISVQY 244
>gi|52078642|ref|YP_077433.1| tRNA pseudouridine synthase A [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319649083|ref|ZP_08003291.1| tRNA pseudouridine synthase A [Bacillus sp. BT1B_CT2]
gi|404487512|ref|YP_006711618.1| tRNA pseudouridine synthase A [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423680541|ref|ZP_17655380.1| tRNA pseudouridine synthetase A [Bacillus licheniformis WX-02]
gi|62901269|sp|Q65P74.1|TRUA_BACLD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|52001853|gb|AAU21795.1| pseudouridylate synthase I [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52346506|gb|AAU39140.1| tRNA pseudouridine synthase TruA [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|317388783|gb|EFV69602.1| tRNA pseudouridine synthase A [Bacillus sp. BT1B_CT2]
gi|383441647|gb|EID49356.1| tRNA pseudouridine synthetase A [Bacillus licheniformis WX-02]
Length = 247
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 143/253 (56%), Gaps = 7/253 (2%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+ + I+YDG + G+Q Q TIQ +EKAL + K +E + +V + RTD+GVHA
Sbjct: 1 MRMKCTISYDGHLFYGYQVQPGQRTIQDELEKALQTLHK-AKERIPVVSSGRTDSGVHAV 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQ HF +P S + +A LN LLP DI VR+ A +FHARFSAK K Y Y IY
Sbjct: 60 GQTIHFDSPLSIPEAKWPYA-LNALLPDDISVRKAEAVNDQFHARFSAKRKEYRYMIYRG 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
D F+R+YAYH Y L+ +++A+ Y VG HDF++F + + + V++V +
Sbjct: 119 RHPDVFKRYYAYHVPYDLDMEKVKEASRYLVGTHDFTSFCATKTE--VKDKVRTVHELEW 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ G LQ+ + GSGFLY VR + LL +G P + K++ ++R + +A
Sbjct: 177 SDTGDGLQMRIVGSGFLYNMVRIIAGTLLDVGTGKFSPGDIEKMILAKNRDAAGR---TA 233
Query: 289 PPHGLCLVEVKYN 301
P HGL L V Y+
Sbjct: 234 PAHGLYLWRVIYD 246
>gi|270291103|ref|ZP_06197326.1| tRNA pseudouridine synthase A [Pediococcus acidilactici 7_4]
gi|304385383|ref|ZP_07367728.1| tRNA pseudouridine synthase A [Pediococcus acidilactici DSM 20284]
gi|418069660|ref|ZP_12706937.1| pseudouridylate synthase [Pediococcus acidilactici MA18/5M]
gi|270280499|gb|EFA26334.1| tRNA pseudouridine synthase A [Pediococcus acidilactici 7_4]
gi|304328590|gb|EFL95811.1| tRNA pseudouridine synthase A [Pediococcus acidilactici DSM 20284]
gi|357536191|gb|EHJ20222.1| pseudouridylate synthase [Pediococcus acidilactici MA18/5M]
Length = 248
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 152/253 (60%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ +AYDGT +AG+Q Q + T++ ++++A+ ++ K + ++ + G+ RTD GVHA+G
Sbjct: 2 RYKITMAYDGTNFAGFQAQPNQRTVEGVLKRAVNKIAKNPQPEIPIFGSGRTDAGVHAFG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P +H ALN +LP D +V+++ +FHARF+ K Y Y++
Sbjct: 62 QVVHFDLPIEMTANNMLH-ALNSILPLDTQVKKVEIVDEDFHARFTTHGKRYQYRMALGE 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+DPF+R+Y H + ++ L++QA + G HDFS+FV + N V++++
Sbjct: 121 FVDPFKRNYTGHWKFPISIELIQQAIKDLEGTHDFSSFVASGSTAK--NHVRTIYEAKAW 178
Query: 230 EMGALLQL--EVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ A ++ E G+GFLY VR MVA+L++IG + P D +P++LA +DR + +
Sbjct: 179 KDEAQNEIIFEFYGNGFLYNMVRIMVAVLVEIGSKRRPVDDIPRLLAVKDRNQARG---T 235
Query: 288 APPHGLCLVEVKY 300
AP GL L EV Y
Sbjct: 236 APASGLYLKEVDY 248
>gi|222056725|ref|YP_002539087.1| tRNA pseudouridine synthase A [Geobacter daltonii FRC-32]
gi|254789637|sp|B9M6W5.1|TRUA_GEOSF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|221566014|gb|ACM21986.1| tRNA pseudouridine synthase A [Geobacter daltonii FRC-32]
Length = 244
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 138/249 (55%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+I YDGT Y GWQ Q + TIQ ++E++L K+ + +RL + RTD GVHA G V
Sbjct: 5 KLIIEYDGTAYCGWQLQPNGITIQQVIEESL---EKMLGQSVRLQSSGRTDAGVHALGMV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T + + LN LLPPDI +R+ S F+ R A SK Y Y IYN
Sbjct: 62 AVFKTQKDLP-VRAFSDGLNCLLPPDIAIRDASEVPLSFNPRADAISKHYRYTIYNSKRR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P R ++H LN LM+ A +FVG+HDF+AF N ++ +F V ++
Sbjct: 121 SPLTRLNSWHLRGILNMELMQLGASHFVGEHDFAAF--RASNCVAKTTIRRMFHVSVAKV 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G + ++V GSGFL VR + L+ +G+ + P +P +LA DR + ++APP
Sbjct: 179 GDSVIIDVHGSGFLKNMVRVIAGTLVAVGQGKLDPSAIPGLLAGGDR---SASGITAPPQ 235
Query: 292 GLCLVEVKY 300
GLCL+EV Y
Sbjct: 236 GLCLMEVFY 244
>gi|87308089|ref|ZP_01090231.1| Pseudouridylate synthase (tRNA [Blastopirellula marina DSM 3645]
gi|87289171|gb|EAQ81063.1| Pseudouridylate synthase (tRNA [Blastopirellula marina DSM 3645]
Length = 260
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/262 (37%), Positives = 145/262 (55%), Gaps = 13/262 (4%)
Query: 45 SFPGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTG 104
P +L+++YDGT YAGWQ Q TIQ +E+ L+++T E +R+ G+ RTD+G
Sbjct: 3 ELPERALQLIVSYDGTNYAGWQIQNDQRTIQGALERTLLKITG---EKIRVTGSGRTDSG 59
Query: 105 VHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYK 164
VHA GQV F S + + ALN LPPDI V+ A+PEF+A A K Y Y
Sbjct: 60 VHAIGQVVSFRMQ-SQLSPDVMRRALNAELPPDIVVQSARNAIPEFNAIDCAIKKRYRYL 118
Query: 165 IYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF 224
+ + D F R YA+ +LN M+ AA++ +G+HDF++F +V + V+ VF
Sbjct: 119 LQEGRIDDVFSRQYAWFVKKELNFAAMQAAAQHLIGEHDFASFESV--GSERMTTVRHVF 176
Query: 225 RFDVIEMGA----LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKE 280
V+ + +EVE +GFLY VR +V L+ +GK PP+ V ++LA + R
Sbjct: 177 DVQVLRSERHEFDKVAIEVEANGFLYNMVRIIVGTLVDVGKGRRPPEWVAEVLAAKKR-- 234
Query: 281 LAKYALSAPPHGLCLVEVKYNE 302
++AP HGL L+ V Y E
Sbjct: 235 -TAGGMTAPAHGLYLLRVDYPE 255
>gi|291548427|emb|CBL21535.1| pseudouridylate synthase I [Ruminococcus sp. SR1/5]
Length = 245
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 137/248 (55%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
LV+AYDGT+Y+GWQ Q + TIQ ++ L ++L E + +GASRTD GVHA G VA
Sbjct: 6 LVVAYDGTKYSGWQTQPNGITIQGVLNDTL---SELLGEKIETIGASRTDAGVHALGNVA 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
F T G E ALN LP DIR++ P+FH R+ K Y Y+I N
Sbjct: 63 VFDTESRIPG-EKFSYALNQRLPEDIRIQLSEEVEPDFHPRYCDSEKTYEYRILNRKFPV 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P +R Y+Y YKL+ M++A Y +G+HDF++F ++ +++V DV G
Sbjct: 122 PTERLYSYFYHYKLDVDKMKEATSYLIGRHDFASFCG--SGAQVKTTIRTVTSMDVWRDG 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
++ + + G+GFLY VR + L++IG PP+ + KIL DR +AP G
Sbjct: 180 DMVTIRISGTGFLYNMVRIISGTLIEIGNGQYPPERMDKILKACDRGAAGP---TAPAQG 236
Query: 293 LCLVEVKY 300
L L+ +++
Sbjct: 237 LTLMGIEF 244
>gi|325678788|ref|ZP_08158386.1| tRNA pseudouridine synthase A [Ruminococcus albus 8]
gi|324109292|gb|EGC03510.1| tRNA pseudouridine synthase A [Ruminococcus albus 8]
Length = 250
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 144/258 (55%), Gaps = 19/258 (7%)
Query: 51 WRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+++ +AYDG+ Y GWQ Q++ +Q +VE A+ ++T E + + G SRTD GVHA
Sbjct: 4 FKVTLAYDGSGYHGWQRQSNALAVQEVVENAIFKLTG---EKVVVQGCSRTDAGVHARMY 60
Query: 111 VAHF-----ITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKI 165
V ITP I LN LP DI V FHAR+ K K Y Y +
Sbjct: 61 VLSMELESTITP------RGIQLGLNSWLPDDISVIGCEECEAGFHARYHCKGKEYEYIV 114
Query: 166 YNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFR 225
+N + DPF ++ A+ + Y ++ L+ +AA+ +VG+HDF AF + + + V++++R
Sbjct: 115 HNSRIKDPFLKNTAFRNTYPIDEVLLDKAAKDYVGEHDFKAFCSTACDKEI--TVRTIYR 172
Query: 226 FDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
FDV G L+ V G+GFLY VR MV LL I + I D +P+I+ ++DR + K
Sbjct: 173 FDVRREGELVIFTVAGNGFLYNMVRIMVGTLLFINEGKIAADAIPRIIESKDRTKAGK-- 230
Query: 286 LSAPPHGLCLVEVKYNEE 303
+ PP GL L +V Y++E
Sbjct: 231 -TVPPQGLYLNKVYYDKE 247
>gi|423473427|ref|ZP_17450169.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG6O-2]
gi|402425912|gb|EJV58054.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG6O-2]
Length = 245
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 139/253 (54%), Gaps = 14/253 (5%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG RY GWQ + TIQ +E + + E E ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARYKGWQRLGNNDNTIQGKIESIISEMVGKETE---IIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGL--ESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
QVA+F + + L + LN LP DI + + FHAR+++K+K Y YKI+N
Sbjct: 61 QVANFQSD---EKLVEHKVKKYLNQYLPNDISITSVEEVPDRFHARYNSKAKTYLYKIWN 117
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
+ +PF R Y+ H +LN M++AA++ +G HDF+AF N + + + V+ V+ D
Sbjct: 118 EEHTNPFMRKYSMHVNKQLNVKSMKEAAKHLIGSHDFTAFSNAKSKKKSM--VREVYTLD 175
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V E +Q+ V G+GFL+ VR +V L+++G + D +P IL + R ++
Sbjct: 176 VFEESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLEADAIPNILEEKQRNQI---NCL 232
Query: 288 APPHGLCLVEVKY 300
A GL L VK+
Sbjct: 233 AEASGLYLENVKF 245
>gi|223984957|ref|ZP_03635058.1| hypothetical protein HOLDEFILI_02362 [Holdemania filiformis DSM
12042]
gi|223963077|gb|EEF67488.1| hypothetical protein HOLDEFILI_02362 [Holdemania filiformis DSM
12042]
Length = 268
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 144/253 (56%), Gaps = 11/253 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSP--PTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHA 107
+++ V++YDG YAGWQ Q + TIQ ++ A ++ + ++ + + G+ RTD VHA
Sbjct: 4 RFKAVVSYDGFDYAGWQIQPAERGATIQQTIQDA---ISVICQQPVSITGSGRTDAQVHA 60
Query: 108 WGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
WGQV HF FS + + A+NG LP DI +R + A FHARF A K Y Y+I
Sbjct: 61 WGQVFHFDVDFSLNAFQ-WKRAINGHLPKDIHIRSVEAVDSRFHARFDAIGKRYEYRI-Q 118
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
+ F R YA+ S + LN MR+ A Y +G+HDFS+F R + + + +++ R +
Sbjct: 119 LGEANVFTRRYAFQSPWTLNVQAMREGAAYLIGEHDFSSFCANSRAE-MPDQARTITRLE 177
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ E L+L EGSGFL VR M L+++G+ + P V +L QD K++ + +
Sbjct: 178 LAEENDQLRLIYEGSGFLRYMVRMMTGTLIEVGRGRLAPQDVQWMLQAQD-KQICHF--N 234
Query: 288 APPHGLCLVEVKY 300
A P GL LVEV Y
Sbjct: 235 AKPQGLTLVEVYY 247
>gi|407473172|ref|YP_006787572.1| tRNA pseudouridine synthase A [Clostridium acidurici 9a]
gi|407049680|gb|AFS77725.1| tRNA pseudouridine synthase A [Clostridium acidurici 9a]
Length = 251
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 143/250 (57%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQ-TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDG+RY GWQ Q + T+Q +E L R+T E++ ++G+ RTD GVHA GQ
Sbjct: 5 KLTIKYDGSRYKGWQRQENTDMTVQEKIENVLKRIT---NENIEIIGSGRTDAGVHAIGQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T S L+ I + LP DI + + FH+R++A SK Y YKI+N
Sbjct: 62 VANFKTE-SDMSLKEIKKYFSIYLPDDIVIDRVEEVEERFHSRYNAISKKYLYKIWNGDN 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
+DPF R Y+ H LN MR+ A Y +G+HDF++F + + V++++ D+ +
Sbjct: 121 LDPFSRKYSVHIEQSLNLEKMRKGAGYLIGEHDFTSFTT--DKSKKKSKVRTIYSIDITK 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+++ G+GFLY VR +VA L+ +G E P+ V KIL ++R A +A
Sbjct: 179 NDKSVEILFHGNGFLYNMVRIIVATLIDVGLEKSKPENVLKILEGKNR---ALAGDTAVA 235
Query: 291 HGLCLVEVKY 300
GL L+EV+Y
Sbjct: 236 KGLYLLEVEY 245
>gi|423455957|ref|ZP_17432810.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG5X1-1]
gi|401133381|gb|EJQ41012.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG5X1-1]
Length = 245
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 137/251 (54%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG RY GWQ + TIQ +E + + E E ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARYKGWQRLGNNDNTIQGKIESIISEMVGKETE---IIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITSVEEVPDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H LN +M++AA++ +G HDF+AF N + + + V+ V+ DV
Sbjct: 120 HTNPFMRKYSMHVNKPLNVKIMKEAAKHLIGSHDFTAFSNAKSKKKSM--VREVYTLDVF 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + D +P IL + R ++ A
Sbjct: 178 EESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLEADAIPNILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L VK+
Sbjct: 235 ASGLYLENVKF 245
>gi|295099211|emb|CBK88300.1| pseudouridylate synthase I [Eubacterium cylindroides T2-87]
Length = 243
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/251 (39%), Positives = 145/251 (57%), Gaps = 11/251 (4%)
Query: 51 WRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+++++AYDG+ YAGWQ Q + IQ ++EKAL T + ++++ + + RTD VHA GQ
Sbjct: 3 YKVILAYDGSNYAGWQKQENALGIQEVIEKAL---TTIHKKEIFITASGRTDAKVHALGQ 59
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
V HF G + ALN LLP DIR+ ++S +FHARFSAKSK Y Y I
Sbjct: 60 VFHFEADKKI-GPDRYKMALNALLPEDIRILKVSMEADDFHARFSAKSKRYDY-ICTYEK 117
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNP-VKSVFRFDVI 229
+PF Y + LN MR+A+EY VG HDF++F + + + R P +K++ R D+
Sbjct: 118 ENPFVYKYKEILNHTLNIEAMRKASEYLVGTHDFTSFSSSKIDPR--KPRIKTITRIDIF 175
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E ++ EG+GFL QVR M L+ +G I + V +IL D+K+ + +A
Sbjct: 176 EENQDIRFIYEGTGFLRYQVRMMTETLIMVGSNKIDTEEVKRIL---DKKDKSACRYNAS 232
Query: 290 PHGLCLVEVKY 300
P+GL LV V Y
Sbjct: 233 PNGLYLVHVNY 243
>gi|386712499|ref|YP_006178821.1| tRNA pseudouridine synthase A [Halobacillus halophilus DSM 2266]
gi|384072054|emb|CCG43544.1| tRNA pseudouridine synthase A [Halobacillus halophilus DSM 2266]
Length = 247
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 145/249 (58%), Gaps = 7/249 (2%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
R +I YDGT YAG+Q Q + T+Q +EK L ++ K + ++++ + RTD+GVHA GQV
Sbjct: 5 RCIIQYDGTNYAGYQVQLNGKTVQEKLEKVLTKIHKGRK--IKVIASGRTDSGVHAIGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF T +E+ AL +LP DI V + +FHAR+ K Y Y I+N
Sbjct: 63 IHFDTELKLP-MENWKRALATMLPADITVTKAEPVSSDFHARYDTTGKEYRYFIWNSKEP 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
+ F+RHY YH +L+ M++A Y G+H+F++F + ++D + V+++ + V++
Sbjct: 122 NIFKRHYYYHIRKELDVPAMKEACRYIEGEHNFTSFCS-PKSDVKGSKVRTIHQASVVQK 180
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G L + +GSGFLY VR +V LL++G P +P IL ++R E A +APPH
Sbjct: 181 GEELIFQFKGSGFLYNMVRIIVGTLLEVGHHEREPADIPSILEKENR-EFA--GNTAPPH 237
Query: 292 GLCLVEVKY 300
GL L +V Y
Sbjct: 238 GLFLWKVDY 246
>gi|325261709|ref|ZP_08128447.1| tRNA pseudouridine synthase A [Clostridium sp. D5]
gi|324033163|gb|EGB94440.1| tRNA pseudouridine synthase A [Clostridium sp. D5]
Length = 248
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 139/254 (54%), Gaps = 13/254 (5%)
Query: 51 WRLVIAYDGTRYAGWQFQTS-PPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L + YDG+RY GWQ Q S T+Q I+E+A+ VT + E + G+ RTD GVHA G
Sbjct: 4 YKLTVVYDGSRYQGWQRQKSTEKTVQGILERAVTEVTGRQTE---IDGSGRTDGGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
Q A + P + A+LN LP DIRV+E+ FHAR++AK K Y Y I
Sbjct: 61 QTASMVLPGKVEET-GFCASLNNALPEDIRVKEMKLVKNGFHARYNAKGKRYEYFIDTRE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
D F R Y YH Y+LN M +AAEY +G HDF+ F + + ++ +++++ +
Sbjct: 120 KPDVFTRKYCYHYPYELNIPAMEEAAEYLIGTHDFAGFTDKKDE---MSTIRTIYDIIIE 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA-LSA 288
+ + +++E G+GFLY VR + LL+IG P L DR +YA A
Sbjct: 177 KQDSKIRMEFYGTGFLYHMVRILTGTLLEIGTGEKRPHEAAAALEAGDR----EYAGFLA 232
Query: 289 PPHGLCLVEVKYNE 302
P GL L EV YNE
Sbjct: 233 PARGLFLKEVYYNE 246
>gi|333896222|ref|YP_004470096.1| tRNA pseudouridine synthase A [Thermoanaerobacterium xylanolyticum
LX-11]
gi|333111487|gb|AEF16424.1| tRNA pseudouridine synthase A [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 239
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/248 (37%), Positives = 142/248 (57%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
+VI YDGT Y GWQ Q + T+Q ++ KA+ ++T ED+ L+G+SRTD GVHA QVA
Sbjct: 1 MVIEYDGTNYHGWQIQKNAVTVQEVITKAIKKITS---EDVNLIGSSRTDAGVHALNQVA 57
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+FI+ + L + ALN +LP DI ++ A +FH+R+SAK K Y Y IYN
Sbjct: 58 NFISNCNI-PLSKMPNALNSVLPKDIVIKNAYEADMDFHSRYSAKGKRYKYIIYNRKFNS 116
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P R+Y++H +L+ M ++ Y G HDFSAF + + +++V + +
Sbjct: 117 PVYRNYSWHISDELDLDKMIESLTYLKGTHDFSAF--KSSGSSVKDSIRTVRDISLRKND 174
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
++ E+E GFLY VR +V ++ +G I P V +IL ++DR K +APP G
Sbjct: 175 FNVEFEIEADGFLYNMVRIIVGTIVDVGIGKINPIHVKEILESKDRCMAGK---TAPPQG 231
Query: 293 LCLVEVKY 300
L L ++ Y
Sbjct: 232 LFLTKIYY 239
>gi|452821814|gb|EME28840.1| tRNA pseudouridine synthase A [Galdieria sulphuraria]
Length = 329
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/265 (36%), Positives = 154/265 (58%), Gaps = 17/265 (6%)
Query: 48 GFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHA 107
GF++RL +AYDGT ++GWQFQ ++Q ++E+ L + +L R +R++GA RTD+GVHA
Sbjct: 71 GFRYRLRVAYDGTDFSGWQFQEKRRSVQGVLEQVLSK--RLNRS-IRIIGAGRTDSGVHA 127
Query: 108 WGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVP-------EFHARFSAKSKI 160
GQVAHF T S+ + LN +L DIRV ++ P +HA FSA+ K+
Sbjct: 128 RGQVAHFDT-VSFSDCPHLEYTLNRMLSGDIRVYDLQQKEPISSDPRNNWHAIFSARKKV 186
Query: 161 YHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLN 218
Y Y+ +DP +R + +H + N + A + F+G HDF++F N + + N
Sbjct: 187 YSYRFSIAKELDPLERRFRFHFYRRCNLERLYDATKVFLGTHDFTSFCSRNTEMKEMEKN 246
Query: 219 PVKSVFRFDVI-EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQD 277
++++R D++ E G +LE E +G LYR +RN+ + L + + + D + +IL +D
Sbjct: 247 MCRTIYRIDLVHESGDSYRLEYELNGALYRMIRNITSSLFFVASDELTLDDLNEILHAKD 306
Query: 278 RKELAKYALSAPPHGLCLVEVKYNE 302
R+ K +AP HGLCL V Y++
Sbjct: 307 RRRAPK---AAPAHGLCLERVIYDD 328
>gi|392392120|ref|YP_006428722.1| pseudouridylate synthase I [Desulfitobacterium dehalogenans ATCC
51507]
gi|390523198|gb|AFL98928.1| pseudouridylate synthase I [Desulfitobacterium dehalogenans ATCC
51507]
Length = 262
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/253 (41%), Positives = 138/253 (54%), Gaps = 11/253 (4%)
Query: 53 LVIAYDGTRYAGWQFQTS--PPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
L +AYDGT Y G+Q Q PTIQ +E KL E++ L A RTDTGVHA GQ
Sbjct: 9 LKVAYDGTHYHGFQRQPEFHGPTIQGTLETVW---AKLVEEEVTLNTAGRTDTGVHAAGQ 65
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
V +F T ++ I A N LLP DIR+ A +FHARFSAK K Y Y+I N V
Sbjct: 66 VVNFRTGARIP-VDKIPKAFNSLLPRDIRILAAQEAAEDFHARFSAKWKRYDYQIDNRPV 124
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
D F R Y+ H KL+ MRQ A+Y VG+H+F AF + ++++ V E
Sbjct: 125 ADVFTRLYSLHEPVKLDWQRMRQGAQYLVGRHNFKAFSAAGGTSKTFE--RTLYLCQVAE 182
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+++ G GFLY VR + L+ +GK+ I P+ +P IL + DR + ++APP
Sbjct: 183 NQGDIRITCIGDGFLYNMVRIIAGTLVYVGKKRIQPEGIPDILTSLDR---TRGGVTAPP 239
Query: 291 HGLCLVEVKYNEE 303
GL L V Y EE
Sbjct: 240 QGLTLSYVHYGEE 252
>gi|332638011|ref|ZP_08416874.1| tRNA pseudouridine synthase A [Weissella cibaria KACC 11862]
Length = 249
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 146/253 (57%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDGT + GWQ Q T+Q +EK + ++ K + +R+ G+ RTD VHA G
Sbjct: 3 RYKATISYDGTEFYGWQVQPGKRTVQLEMEKVVNKMAKDPADHIRVQGSGRTDARVHAQG 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF PF E++ L+ +LP DI ++ + FHA+FSA +K Y Y++
Sbjct: 63 QVVHFDLPFDIPN-EAVRKGLSTMLPYDIGIKSVEKVDESFHAQFSAHNKTYRYRLSTTE 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+DPF+R+Y H +++T+LM+QA +VG+HD+ +FV + V++V+ +
Sbjct: 122 FIDPFKRNYTGHWHRRIDTSLMQQAIGDYVGEHDWLSFVASGFQQK--TTVRTVYSAKMW 179
Query: 230 EM--GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E + E G+GFLY Q+R MV +LL+IG + P D + ++ A +DR++ +
Sbjct: 180 EKPEEDEIWFEFTGNGFLYNQIRIMVGVLLEIGNGSRPVDDIQRLFAVKDRQQA---RFT 236
Query: 288 APPHGLCLVEVKY 300
AP GL L+ V Y
Sbjct: 237 APAQGLYLMSVDY 249
>gi|399055838|ref|ZP_10743488.1| pseudouridylate synthase I [Brevibacillus sp. CF112]
gi|433543260|ref|ZP_20499670.1| tRNA pseudouridine synthase A [Brevibacillus agri BAB-2500]
gi|398046701|gb|EJL39295.1| pseudouridylate synthase I [Brevibacillus sp. CF112]
gi|432185389|gb|ELK42880.1| tRNA pseudouridine synthase A [Brevibacillus agri BAB-2500]
Length = 244
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 143/251 (56%), Gaps = 9/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ R V+ YDGT ++G+Q Q T+Q +E AL R+T ED+++ G+ RTD GVHA G
Sbjct: 3 RLRCVLGYDGTDFSGFQVQPDQVTVQGEIEAALKRITG---EDIQIHGSGRTDAGVHARG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF T S+ L+ LN LP I +R + FHARF + K Y Y I N+
Sbjct: 60 QVIHFDTN-SHIPLDKWRFVLNNQLPDAIVIRSVEEVAESFHARFDVRVKEYRYCIDNNP 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
V D F+ YA H + L+ M+QAA + VG+HDF++F + + + + V++V+ V
Sbjct: 119 VADVFRHRYADHIRFPLDVEAMQQAARHLVGEHDFTSFCSAKTF--VEDKVRTVYSLTVE 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
G + + G+GFLY VR +V L+++G+ PD + KILA +DR+ K +AP
Sbjct: 177 RSGGEVWVTCRGNGFLYNMVRIIVGTLVEVGQGKRHPDELKKILAARDREMAGK---TAP 233
Query: 290 PHGLCLVEVKY 300
GL + EV Y
Sbjct: 234 AKGLTMWEVVY 244
>gi|423461506|ref|ZP_17438303.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG5X2-1]
gi|401136644|gb|EJQ44231.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG5X2-1]
Length = 245
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 141/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMIGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVQERFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +V+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLEVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + D +P IL + R ++ A
Sbjct: 178 EAAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDADAIPNILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|312898257|ref|ZP_07757648.1| tRNA pseudouridine synthase A [Megasphaera micronuciformis F0359]
gi|310620754|gb|EFQ04323.1| tRNA pseudouridine synthase A [Megasphaera micronuciformis F0359]
Length = 266
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/253 (39%), Positives = 140/253 (55%), Gaps = 9/253 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L +AYDGT + G+Q Q+S P++Q VE AL + + ++R+ GA+RTD+GVHA GQV
Sbjct: 9 LRLAYDGTEFYGFQRQSSLPSVQQHVEAAL---SGIYGRNIRIYGAARTDSGVHARGQVV 65
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F + +E + AL G LPP I V + F R K K Y Y + ND V D
Sbjct: 66 NFYGDDTIP-VERLPYALKGSLPPAIVVLSATLERENFSVRHDNKGKHYRYTLVNDGVPD 124
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
PF YA++ LN M++AA Y G HDFSAF N +NPVK+++ V+
Sbjct: 125 PFMLRYAWYIRKPLNCESMKEAASYLKGTHDFSAFEGA--NTTPMNPVKTMYGIFVVSKK 182
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ ++V GSGFLY VRNM L+ +G + +IL DR++L +AP G
Sbjct: 183 NRIIIDVVGSGFLYHMVRNMAGALVDVGMGRKSSQRIKEILKGGDRRKLGA---TAPAQG 239
Query: 293 LCLVEVKYNEEHL 305
LCL EV Y+ E L
Sbjct: 240 LCLEEVYYSSERL 252
>gi|410657269|ref|YP_006909640.1| tRNA pseudouridine synthase A [Dehalobacter sp. DCA]
gi|410660306|ref|YP_006912677.1| tRNA pseudouridine synthase A [Dehalobacter sp. CF]
gi|409019624|gb|AFV01655.1| tRNA pseudouridine synthase A [Dehalobacter sp. DCA]
gi|409022662|gb|AFV04692.1| tRNA pseudouridine synthase A [Dehalobacter sp. CF]
Length = 239
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 137/249 (55%), Gaps = 11/249 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ IAYDGT+Y GWQ Q TIQ +E L K+ E ++++G RTD GVHA +
Sbjct: 1 MTIAYDGTKYKGWQKQKDTDLTIQGKIETVL---AKMAEEKIQVIGCGRTDAGVHAENYI 57
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F T ++ + I A L LP DI V+ + FHAR++ K+K Y Y I N+
Sbjct: 58 ANFHTTSTFK-TKKILAYLYEFLPEDIVVKSMEEVSERFHARYNVKAKTYVYTINNNKFR 116
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F R Y YH KL+ MR AAE +G HDF +F N + + + S+ + E
Sbjct: 117 DVFNRKYTYHLADKLDLEQMRTAAELLIGTHDFQSFTNERSAKSTVKTINSIL---INEN 173
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L+++E G+ FL+ +R +V LL++GK + P+ V KIL Q++K L A
Sbjct: 174 KGLIKIEFNGNSFLWNMLRIIVGTLLEVGKGTLQPNDVEKIL--QEKKRWEARPL-AQAK 230
Query: 292 GLCLVEVKY 300
GLCLV+V+Y
Sbjct: 231 GLCLVDVQY 239
>gi|302876500|ref|YP_003845133.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B]
gi|307687172|ref|ZP_07629618.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B]
gi|302579357|gb|ADL53369.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B]
Length = 244
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 144/250 (57%), Gaps = 11/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L++ YDGT+Y+GWQ Q + T+Q +EKA+ +TK E + L+G SRTD+GVHA G
Sbjct: 5 KLILEYDGTKYSGWQKQKNSVTVQGTIEKAIEAITK---ESVELIGCSRTDSGVHAKGYT 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPE-FHARFSAKSKIYHYKIYNDAV 170
A+F T S +E + A+N LP DI + S VPE FH+RF+ K Y Y + N
Sbjct: 62 ANFFTN-SKIPIERFYIAINAKLPEDIVILS-SEEVPEDFHSRFNCIGKTYCYSVLNRVS 119
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
R+Y YH KL+ M++AAE FVG +DF+AF N+ + + V+++ R +V E
Sbjct: 120 YPAMYRNYLYHVPRKLSIDEMKKAAESFVGTYDFNAFRNL--GTEVASTVRTIHRIEVEE 177
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G ++ + V G GFLY VR + L+++G D + IL ++DR K +AP
Sbjct: 178 HGDIINILVTGDGFLYNMVRIIAGTLVEVGLGQKRSDQIKVILESKDRNRAGK---TAPA 234
Query: 291 HGLCLVEVKY 300
GL L +V Y
Sbjct: 235 RGLSLDKVYY 244
>gi|228913175|ref|ZP_04076814.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228846580|gb|EEM91593.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 250
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 142/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 9 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 65
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 66 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 124
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ DV+
Sbjct: 125 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVM 182
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P+IL + R ++ A
Sbjct: 183 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQI---NCLAE 239
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 240 ASGLYLENVEF 250
>gi|228906232|ref|ZP_04070119.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis IBL 200]
gi|228853388|gb|EEM98158.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis IBL 200]
Length = 250
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 141/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 9 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 65
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 66 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITSVEEVQDRFHARYNSKAKTYLYKIWNEE 124
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +V+
Sbjct: 125 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLEVM 182
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + D +P IL + R ++ A
Sbjct: 183 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDADAIPNILEEKQRNQI---NCLAE 239
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 240 ASGLYLENVEF 250
>gi|197117301|ref|YP_002137728.1| tRNA pseudouridine synthase A [Geobacter bemidjiensis Bem]
gi|238690881|sp|B5EFM8.1|TRUA_GEOBB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|197086661|gb|ACH37932.1| tRNA pseudouridines 38,39,40 synthase [Geobacter bemidjiensis Bem]
Length = 250
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/252 (38%), Positives = 138/252 (54%), Gaps = 8/252 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+I YDGT Y GWQ Q + T+Q ++++AL + E L G+ RTD GVHA G V
Sbjct: 5 KLIIEYDGTAYCGWQVQPNGRTVQEVLQEAL---AAMLGEKTPLHGSGRTDAGVHARGMV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T + L + LN LLP DI VRE EFH RF A +K Y Y I D +
Sbjct: 62 ACFKTDKAMP-LRAFREGLNCLLPGDIAVREACEVPLEFHPRFDAHAKHYRYTILLDDLR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P R + KL+ MR A FVG+HDF+AF N V+ ++ D+++
Sbjct: 121 SPLSRLTVWRLKGKLDIQAMRAACAAFVGEHDFAAF--RASNCAAKTTVRRIYSMDLVQE 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G LL L+V+GSGFL VR + L+++G+ + V ++L DR++ ++ PP
Sbjct: 179 GCLLHLDVKGSGFLKNMVRIITGTLIEVGQGKKSVEDVARLLQGGDRQQ--NSGMTVPPQ 236
Query: 292 GLCLVEVKYNEE 303
GLCL++V Y E+
Sbjct: 237 GLCLMQVYYQEK 248
>gi|160881752|ref|YP_001560720.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg]
gi|160430418|gb|ABX43981.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg]
Length = 245
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 141/248 (56%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L +AYDGT Y GWQ Q + TI+ ++ + L TKL +E++ ++GASRTD GVHA+G VA
Sbjct: 6 LKVAYDGTNYCGWQVQPNAKTIEGVLNECL---TKLLKEEIVIIGASRTDAGVHAYGNVA 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
F T S E + ALN LP DI ++ +FH R+ K Y Y+IYN
Sbjct: 63 VFDTN-SRIPAEKLSYALNAHLPEDIVIQASMEVESDFHPRYCDTRKTYEYRIYNATFPL 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P R YA+ Y L+ MR+AA Y +G+HDF +F + N ++ + ++++ + +
Sbjct: 122 PTNRRYAHFVYYDLDLEAMRKAASYLIGEHDFVSFCSA--NTQVKDTTRTIYDIQIEKER 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
L+ + ++G+GFLY VR + L+Q+G P+ V + L +DR+ +AP G
Sbjct: 180 ELIVIRIKGNGFLYNMVRIIAGTLIQVGTHQWEPERVLEALTKKDRQAAGP---TAPAKG 236
Query: 293 LCLVEVKY 300
L LVE++Y
Sbjct: 237 LTLVEIEY 244
>gi|365163525|ref|ZP_09359633.1| tRNA pseudouridine synthase A 2 [Bacillus sp. 7_6_55CFAA_CT2]
gi|363615391|gb|EHL66855.1| tRNA pseudouridine synthase A 2 [Bacillus sp. 7_6_55CFAA_CT2]
Length = 245
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 141/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTDTGVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDTGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M+ AA++ VG HDF+AF N + + + V+ V+ DV+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|399516876|ref|ZP_10758457.1| tRNA pseudouridine synthase A [Leuconostoc pseudomesenteroides
4882]
gi|398648256|emb|CCJ66484.1| tRNA pseudouridine synthase A [Leuconostoc pseudomesenteroides
4882]
Length = 256
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 151/260 (58%), Gaps = 13/260 (5%)
Query: 50 KWRLVIAYDGTRYAGWQFQT-----SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTG 104
+++ ++AYDGT + G+Q QT S T+Q + K + ++ K + +++VGASRTDTG
Sbjct: 3 RYKAIVAYDGTDFFGFQLQTKNGVESARTVQGELNKVVNQMAKKPQPPIKVVGASRTDTG 62
Query: 105 VHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYK 164
VHA+GQV HF P+ ++ LN LLP DI V+ ++ +FHARF+ +K Y Y+
Sbjct: 63 VHAFGQVVHFDFPYDI-ASDNFRKGLNTLLPRDILVKSVTRVSDDFHARFNTHAKRYIYR 121
Query: 165 IYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF 224
I DPF+RHY H + L+ M+ A F+G+HDF++F + V+ +
Sbjct: 122 ISTLDYTDPFKRHYTGHFHWHLDVDRMKLALPDFLGEHDFASF--AASGNETATTVRRIT 179
Query: 225 RFDVIEMGA--LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELA 282
R ++ E L L EG+ FLY Q+R MV +LL+IG P + +++A +DR E A
Sbjct: 180 RVELTEKAEEHELVLVFEGNAFLYNQIRIMVGVLLEIGTGRRPVHDIQRLIAVKDR-EQA 238
Query: 283 KYALSAPPHGLCLVEVKYNE 302
++ +AP GL L E+ YN+
Sbjct: 239 RF--TAPASGLYLDEISYND 256
>gi|229165426|ref|ZP_04293210.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH621]
gi|228618024|gb|EEK75065.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH621]
Length = 268
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG RY GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 27 YKLTIQYDGARYKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 83
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 84 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITSVEEVPDRFHARYNSKAKTYLYKIWNEE 142
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H +LN M++AA++ VG HDF+AF N + + + V+ V+ DV
Sbjct: 143 HTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVS 200
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + D +P IL + R ++ A
Sbjct: 201 EESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLEADAIPNILEEKQRNQI---NCLAE 257
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 258 ASGLYLENVEF 268
>gi|228983685|ref|ZP_04143885.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228776037|gb|EEM24403.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 250
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 139/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E + + E E ++G SRTD GVHA
Sbjct: 9 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETE---IIGCSRTDAGVHALN 65
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 66 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 124
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ DV+
Sbjct: 125 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVM 182
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P+IL + R ++ A
Sbjct: 183 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQI---NCLAE 239
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 240 ASGLYLENVEF 250
>gi|168216665|ref|ZP_02642290.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239]
gi|182381201|gb|EDT78680.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239]
Length = 244
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 141/250 (56%), Gaps = 11/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L I YDGT Y GWQ Q TIQ VE+A+ +VTK E++ ++G+SRTD+GVHA V
Sbjct: 5 KLTIEYDGTSYFGWQKQPIGNTIQQKVEEAIKKVTK---EEVEILGSSRTDSGVHAKAYV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F T + G ++ AALN LP DI + +FHAR+ K Y Y I N
Sbjct: 62 ANFKTNSNIPG-KNFKAALNSKLPKDIVIMNSEEVAEDFHARYMTTGKTYCYTILNREEP 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQR-NDRLLNPVKSVFRFDVIE 230
+R+Y YH +L+ M++A +YF+GKHDF AF QR + V+++ +
Sbjct: 121 PALERNYVYHVKKQLDVESMKEACKYFLGKHDFKAF---QRPGGTVKTSVRTITDIHIET 177
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G +++ V GFLY VR +V LL++G+ P+ + +++ + DRK K + PP
Sbjct: 178 EGNKIKIYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRK---KSGICVPP 234
Query: 291 HGLCLVEVKY 300
GLCL +V Y
Sbjct: 235 TGLCLEKVFY 244
>gi|226322882|ref|ZP_03798400.1| hypothetical protein COPCOM_00654 [Coprococcus comes ATCC 27758]
gi|225208668|gb|EEG91022.1| tRNA pseudouridine synthase A [Coprococcus comes ATCC 27758]
Length = 256
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 144/255 (56%), Gaps = 9/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ RL +AYDGT Y GWQ Q + TI+ ++ KA + KL E+++++GASRTD+GVHA G
Sbjct: 11 RIRLTVAYDGTNYCGWQIQPNGITIEEVLNKA---ICKLTGEEIQVIGASRTDSGVHARG 67
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
+A F T S E ALN LP DI V + +H R+ K Y Y I N
Sbjct: 68 NIAVFDTE-SRIPAERFSYALNQRLPKDIVVVKSDEVDLNWHPRYQDTLKTYEYHIINTK 126
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
V P +R Y Y + L+ MR+ A Y G+HDF+ F ++ N + V+++ ++
Sbjct: 127 VPIPTERLYNYFVSFDLDVGQMRRGAAYLEGEHDFAPFCCIRTNAK--TTVRTITDLQIL 184
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G + + + G+GFLY VR + +L+++G+ P+ V ++L +R + A++AP
Sbjct: 185 QSGEHITIRITGNGFLYNMVRIIAGVLVRVGRGFYEPEKVKELLEGGER---TREAVTAP 241
Query: 290 PHGLCLVEVKYNEEH 304
P GLCL+E++Y E
Sbjct: 242 PQGLCLMEIRYQNEE 256
>gi|309809150|ref|ZP_07703023.1| tRNA pseudouridine synthase A [Lactobacillus iners SPIN 2503V10-D]
gi|308170595|gb|EFO72615.1| tRNA pseudouridine synthase A [Lactobacillus iners SPIN 2503V10-D]
Length = 260
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 150/253 (59%), Gaps = 7/253 (2%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++L++AYDGT + G+Q Q + TIQ ++E AL+++TK + + + G+ RTD GVHA G
Sbjct: 3 RYKLILAYDGTLFHGFQKQPNQRTIQGVIEDALLKMTKGKH--VIVHGSGRTDAGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + +++ ALN L+P DI + +FH ++S K+K Y Y I
Sbjct: 61 QVIHFDYPGNVIPAKNMLLALNALMPRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQSR 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
DPF+R+Y H YKL+ M++AA Y +GKHDF++F ++++ V+++F ++
Sbjct: 121 FTDPFRRNYTGHCPYKLDMLKMKKAATYLLGKHDFTSF--AASGGQIVDKVRTIFYINLE 178
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G + L+V G GFLY VR + LL+ IG + V KI+ +DR++ +AP
Sbjct: 179 QNGDEIVLDVIGDGFLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQQARN---TAP 235
Query: 290 PHGLCLVEVKYNE 302
GL L V Y++
Sbjct: 236 ASGLYLYHVFYDD 248
>gi|423421412|ref|ZP_17398501.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG3X2-1]
gi|401098578|gb|EJQ06590.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG3X2-1]
Length = 245
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 141/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG RY GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARYKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFKSDEKLVE-HKVKKYLNQYLPNDISITSVEEVPDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R ++ H KLN M++AA++ VG HDF+AF N + + + V+ V+ DVI
Sbjct: 120 HTNPFMRKHSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYSLDVI 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|403388244|ref|ZP_10930301.1| tRNA pseudouridine synthase A [Clostridium sp. JC122]
Length = 244
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 133/249 (53%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L + YDGT Y GWQ Q + T+Q +E ++ L +ED+ ++G SRTD+GVH+ G +
Sbjct: 5 KLTLEYDGTNYFGWQKQKTKVTLQGTIEDI---ISNLTKEDIEIIGCSRTDSGVHSKGYI 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
+F+T S E ALN LP DI V + EFH+R+S + K Y Y I +
Sbjct: 62 CNFVTNSSIPS-EKFKDALNVKLPDDIAVLKSEEVPEEFHSRYSCRGKKYSYTILERPMK 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
R+Y Y L+ M +A +YF+G HDFSAF N + + V+++ V +
Sbjct: 121 ATIDRNYVCQCKYNLDIEKMNEACKYFIGTHDFSAFKN--KGSSVKTSVRTISELYVEKT 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G +++ V GFLY VR +V L+ +G I P + I+ +++R K S PP
Sbjct: 179 GNYVKIFVSADGFLYNMVRIIVGTLIDVGIGKINPKSIKNIIDSKERTNAGK---SMPPQ 235
Query: 292 GLCLVEVKY 300
GLCL EV Y
Sbjct: 236 GLCLEEVYY 244
>gi|415886248|ref|ZP_11548071.1| tRNA pseudouridine synthase A [Bacillus methanolicus MGA3]
gi|387588901|gb|EIJ81222.1| tRNA pseudouridine synthase A [Bacillus methanolicus MGA3]
Length = 245
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 141/251 (56%), Gaps = 8/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I YDG++++G+Q Q TIQ +E AL ++ K ER +++ + RTD GVHA G
Sbjct: 3 RYKCTITYDGSQFSGYQIQPGMRTIQGEIEAALSKLHKGER--IKISASGRTDAGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + + ALN +LP DI V + A P FHARF A K Y Y +Y
Sbjct: 61 QVIHFDSALAIP-TAKWEIALNSVLPDDIAVIRVEKAAPNFHARFDAVGKEYRYFVYLSP 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
DPF+RHYAY Y L+ M++A +Y +G HDF++F + + + + V+++ +
Sbjct: 120 KRDPFKRHYAYQFPYPLDYVAMKEALKYLIGTHDFTSFCSAKTE--IEDKVRTIEEIEFF 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E G LL G+GFLY VR + LL++G P +P IL +DR+ K +AP
Sbjct: 178 EEGDLLVFRFVGNGFLYNMVRILTGTLLEVGSGNRSPYSIPDILEKKDRQYAGK---TAP 234
Query: 290 PHGLCLVEVKY 300
HGL L +V Y
Sbjct: 235 AHGLYLWKVFY 245
>gi|110799502|ref|YP_697060.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124]
gi|168205200|ref|ZP_02631205.1| tRNA pseudouridine synthase A [Clostridium perfringens E str.
JGS1987]
gi|168211871|ref|ZP_02637496.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC
3626]
gi|110674149|gb|ABG83136.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124]
gi|170663322|gb|EDT16005.1| tRNA pseudouridine synthase A [Clostridium perfringens E str.
JGS1987]
gi|170710156|gb|EDT22338.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC
3626]
Length = 244
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 141/250 (56%), Gaps = 11/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L I YDGT Y GWQ Q TIQ VE+A+ +VTK E++ ++G+SRTD+GVHA V
Sbjct: 5 KLTIEYDGTSYFGWQKQPIGNTIQQKVEEAIKKVTK---EEVEILGSSRTDSGVHAKAYV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F T + G ++ AALN LP DI + +FHAR+ K Y Y I N
Sbjct: 62 ANFKTNSNIPG-KNFKAALNSKLPKDIVIMNSEEVAEDFHARYMTTGKTYCYTILNREEP 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQR-NDRLLNPVKSVFRFDVIE 230
+R+Y YH +L+ M++A +YF+GKHDF AF QR + V+++ +
Sbjct: 121 PALERNYVYHVKKQLDVESMKEACKYFLGKHDFKAF---QRPGGTVKTSVRTITDIHIET 177
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G +++ V GFLY VR +V LL++G+ P+ + +++ + DRK K + PP
Sbjct: 178 EGNKIKIYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRK---KAGICVPP 234
Query: 291 HGLCLVEVKY 300
GLCL +V Y
Sbjct: 235 TGLCLEKVFY 244
>gi|423404869|ref|ZP_17382042.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG2X1-2]
gi|423479706|ref|ZP_17456420.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG6X1-1]
gi|401646175|gb|EJS63807.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG2X1-2]
gi|402424932|gb|EJV57094.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG6X1-1]
Length = 245
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 141/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMIGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITSVEEVQDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +V+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLEVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + D +P IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDADAIPNILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|374709786|ref|ZP_09714220.1| tRNA pseudouridine synthase A [Sporolactobacillus inulinus CASD]
Length = 245
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 141/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG+RY GWQ + TIQ +E+ L T + + + +VG SRTD GVHA G
Sbjct: 4 YKLTIQYDGSRYKGWQRLGDTRNTIQGKIEQTL---TVIIGQSIEIVGCSRTDAGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F T D + ++ LN LP DI V + FHAR++AK+K Y YKI+N+
Sbjct: 61 QVANFKTETLLDEADFLNQ-LNHQLPRDICVPAMEHVSDRFHARYNAKAKTYLYKIWNEP 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ +PF R ++ H KL+ MRQA ++F+G HDF+A+ N + + + S + D
Sbjct: 120 ISNPFMRKFSMHVEEKLDVARMRQAGKHFLGTHDFTAYANAKSKKKSMVRTISAIKMDAH 179
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ + + + G GFLY R MV L+++G AI D +P IL ++ R + + A +
Sbjct: 180 D--GFIDIRLTGDGFLYNMARKMVGTLIEVGLGAIEVDAIPHILESKQRVQTGRLADAC- 236
Query: 290 PHGLCLVEVKY 300
GL L + Y
Sbjct: 237 --GLYLEHISY 245
>gi|229171272|ref|ZP_04298862.1| tRNA pseudouridine synthase A 2 [Bacillus cereus MM3]
gi|228612229|gb|EEK69461.1| tRNA pseudouridine synthase A 2 [Bacillus cereus MM3]
Length = 250
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 141/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 9 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMIGKEIEIIGCSRTDAGVHALN 65
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 66 QVANFQSDEKLVE-HKVKKYLNQHLPNDISITNVEEVQDRFHARYNSKAKTYLYKIWNEE 124
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +V+
Sbjct: 125 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYSLEVM 182
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + D +P IL + R ++ A
Sbjct: 183 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDADAIPNILEEKQRNQI---NCLAE 239
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 240 ASGLYLENVEF 250
>gi|258646072|ref|ZP_05733541.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470]
gi|260403447|gb|EEW96994.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470]
Length = 246
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 143/252 (56%), Gaps = 10/252 (3%)
Query: 51 WRLVIAYDGTRYAGWQFQT-SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+R ++ YDGTRY GWQ Q + TIQ +EK L ++T E+++++GA RTD GVH+ G
Sbjct: 3 YRCIVQYDGTRYEGWQKQKRTEETIQGKLEKTLRKITG---EEVQVIGAGRTDAGVHSLG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV +F + E + ALNG LP DI ++ + A FH+RFS K Y Y+I
Sbjct: 60 QVVNFHLKGRWKA-EELETALNGDLPDDIALKHMETAEERFHSRFSTLEKTYRYRIRTST 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ F+R + + L+ M++AA + +G +DF++F ++ + + V+ + ++
Sbjct: 119 EKNVFERRFVWQYGKSLDIEAMKKAAAFLIGTYDFTSFCGNKKMKK--SAVRCISGIEMK 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E+ LQ++ G GFL VR +V L+++G+ + +P IL ++ R+ K +AP
Sbjct: 177 EIKGELQIDFTGDGFLQGMVRILVGTLVEVGEGKRKAESIPAILESKSRE---KAGFTAP 233
Query: 290 PHGLCLVEVKYN 301
P GL LV V+Y
Sbjct: 234 PQGLILVSVRYE 245
>gi|315651854|ref|ZP_07904857.1| tRNA pseudouridine synthase A [Lachnoanaerobaculum saburreum DSM
3986]
gi|315485856|gb|EFU76235.1| tRNA pseudouridine synthase A [Lachnoanaerobaculum saburreum DSM
3986]
Length = 245
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 148/251 (58%), Gaps = 9/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ RL+++YDGT Y GWQ Q + T++ I+ +A ++KL E++ ++GASRTD+GVHA+G
Sbjct: 3 RIRLIVSYDGTNYCGWQKQPNGITVEEILNRA---ISKLTGEEIEVIGASRTDSGVHAYG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
VA F T + A+N LP DIR++ ++H R + K Y Y+I N
Sbjct: 60 NVAVFDTNVRM-AADKFAFAINQRLPDDIRIQYSDEVESDWHPRKNDCIKTYTYRILNRK 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ P +R YA+ + L+ MR+A+ YF+G HDF++F + + + +P+++VF +V+
Sbjct: 119 IDIPTERLYAHFCYFNLDVEKMREASGYFIGTHDFTSFCS--QKSQASSPIRTVFSLEVL 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ ++ + V G GFLY +R + L+++G PP + +I+ ++RK + + P
Sbjct: 177 QDEDMITIVVRGDGFLYNMIRIIAGTLIKVGMGVYPPSHITEIMKAKERKFAGQ---TMP 233
Query: 290 PHGLCLVEVKY 300
GL LVE++Y
Sbjct: 234 AKGLTLVEIEY 244
>gi|339625095|ref|ZP_08660884.1| tRNA pseudouridine synthase A [Fructobacillus fructosus KCTC 3544]
Length = 260
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/257 (37%), Positives = 144/257 (56%), Gaps = 9/257 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPP-----TIQCIVEKALIRVTKLEREDLRLVGASRTDTG 104
++R V+AYDG+ + G+Q Q+ T+Q + KA+ ++ K E +++VGASRTDTG
Sbjct: 3 RYRAVVAYDGSDFLGFQVQSKNGVERHRTVQGELIKAVNQMGKNPAERIKVVGASRTDTG 62
Query: 105 VHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYK 164
VHA GQV HF PF G E + LN +LP DI ++E+ +FHARFS+ +K Y+Y+
Sbjct: 63 VHANGQVIHFNLPFDIPG-EGVRKGLNTILPRDILIKEVRQVQDDFHARFSSHNKRYYYR 121
Query: 165 IYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF 224
+ +DPF+R Y H + L+ + +A +G+ DF+ F +
Sbjct: 122 VSTQDYVDPFKRRYTGHFHWNLDPKRIEKALPDLIGEQDFATFAASGNQTATTIRTITRA 181
Query: 225 RFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
V E L EG+ FLY Q+R MV +LL+IG P D +PK++A +DR E A+Y
Sbjct: 182 EVQVKEDEQELVFTFEGNAFLYNQIRIMVGVLLEIGTGRRPVDAIPKLIAAKDR-EQARY 240
Query: 285 ALSAPPHGLCLVEVKYN 301
+AP GL L + Y+
Sbjct: 241 --TAPAAGLYLDHIDYD 255
>gi|325913236|ref|ZP_08175605.1| tRNA pseudouridine synthase A [Lactobacillus iners UPII 60-B]
gi|325477500|gb|EGC80643.1| tRNA pseudouridine synthase A [Lactobacillus iners UPII 60-B]
Length = 260
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 150/253 (59%), Gaps = 7/253 (2%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++L++AYDGT + G+Q Q + TIQ ++E AL+++TK + + + G+ RTD GVHA G
Sbjct: 3 RYKLILAYDGTLFHGFQKQPNQRTIQGVIEDALLKMTKGKH--VIVHGSGRTDAGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + +++ ALN L+P DI + +FH ++S K+K Y Y I
Sbjct: 61 QVIHFDYPGNVIPAKNMLLALNALMPRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQSR 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
DPF+R+Y H YKL+ M++AA Y +GKHDF++F ++++ V+++F ++
Sbjct: 121 FTDPFRRNYTGHCPYKLDMLKMKKAATYLLGKHDFTSF--AASGGQIVDKVRTIFYINLE 178
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G + L+V G GFLY VR + LL+ IG + V KI+ +DR++ +AP
Sbjct: 179 QHGDEIVLDVIGDGFLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQKARN---TAP 235
Query: 290 PHGLCLVEVKYNE 302
GL L V Y++
Sbjct: 236 ASGLYLYHVFYDD 248
>gi|259500923|ref|ZP_05743825.1| tRNA pseudouridine synthase A [Lactobacillus iners DSM 13335]
gi|302190624|ref|ZP_07266878.1| tRNA pseudouridine synthase A [Lactobacillus iners AB-1]
gi|309803645|ref|ZP_07697735.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 11V1-d]
gi|309804945|ref|ZP_07699003.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 09V1-c]
gi|309806696|ref|ZP_07700691.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 03V1-b]
gi|309808529|ref|ZP_07702428.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 01V1-a]
gi|312871160|ref|ZP_07731258.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 3008A-a]
gi|312872668|ref|ZP_07732733.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2062A-h1]
gi|315653995|ref|ZP_07906911.1| tRNA pseudouridine synthase A [Lactobacillus iners ATCC 55195]
gi|259167617|gb|EEW52112.1| tRNA pseudouridine synthase A [Lactobacillus iners DSM 13335]
gi|308164243|gb|EFO66500.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 11V1-d]
gi|308165705|gb|EFO67930.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 09V1-c]
gi|308166876|gb|EFO69060.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 03V1-b]
gi|308168357|gb|EFO70476.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 01V1-a]
gi|311091710|gb|EFQ50089.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2062A-h1]
gi|311093174|gb|EFQ51520.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 3008A-a]
gi|315488691|gb|EFU78337.1| tRNA pseudouridine synthase A [Lactobacillus iners ATCC 55195]
Length = 260
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 150/253 (59%), Gaps = 7/253 (2%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++L++AYDGT + G+Q Q + TIQ ++E AL+++TK + + + G+ RTD GVHA G
Sbjct: 3 RYKLILAYDGTLFHGFQKQPNQRTIQGVIEDALLKMTKGKH--VIVHGSGRTDAGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + +++ ALN L+P DI + +FH ++S K+K Y Y I
Sbjct: 61 QVIHFDYPGNVIPAKNMLLALNALMPRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQSR 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
DPF+R+Y H YKL+ M++AA Y +GKHDF++F ++++ V+++F ++
Sbjct: 121 FTDPFRRNYTGHCPYKLDMLKMKKAATYLLGKHDFTSF--AASGGQIVDKVRTIFYINLE 178
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G + L+V G GFLY VR + LL+ IG + V KI+ +DR++ +AP
Sbjct: 179 QNGDEIVLDVIGDGFLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQKARN---TAP 235
Query: 290 PHGLCLVEVKYNE 302
GL L V Y++
Sbjct: 236 ASGLYLYHVFYDD 248
>gi|229009911|ref|ZP_04167130.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides DSM 2048]
gi|229131424|ref|ZP_04260320.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-ST196]
gi|228652008|gb|EEL07949.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-ST196]
gi|228751342|gb|EEM01149.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides DSM 2048]
Length = 268
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG RY GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 27 YKLTIQYDGARYKGWQRLGNNDNTIQGKIESI---ISEMVGKEIEIIGCSRTDAGVHALN 83
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 84 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITSVEEVPDRFHARYNSKAKTYLYKIWNEE 142
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H +LN M++AA++ VG HDF+AF N + + + V+ V+ DV
Sbjct: 143 HTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVS 200
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + D +P IL + R ++ A
Sbjct: 201 EESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLEADAIPNILEEKQRNQI---NCLAE 257
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 258 ASGLYLENVEF 268
>gi|229027990|ref|ZP_04184143.1| tRNA pseudouridine synthase A [Bacillus cereus AH1271]
gi|228733378|gb|EEL84207.1| tRNA pseudouridine synthase A [Bacillus cereus AH1271]
Length = 235
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 140/240 (58%), Gaps = 8/240 (3%)
Query: 62 YAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFITPFSYD 121
+ G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV HF TP S +
Sbjct: 3 FCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQVIHFDTPLSLE 60
Query: 122 GLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYAYH 181
+ +A LN +LP DI +R++ EFHAR+ + K Y Y++ D F+R+Y Y
Sbjct: 61 EWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTADVFRRNYVYQ 119
Query: 182 SVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGALLQLEVEG 241
Y L +R+A YF+G HDF++F + + + + + V++++ ++IE L G
Sbjct: 120 YPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQDDELIFRFVG 177
Query: 242 SGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEVKYN 301
+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP HGL L +V YN
Sbjct: 178 NGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGHGLYLWQVNYN 234
>gi|228919351|ref|ZP_04082720.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228840287|gb|EEM85559.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 250
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 143/255 (56%), Gaps = 14/255 (5%)
Query: 49 FKWRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHA 107
+ ++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 7 YNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHA 63
Query: 108 WGQVAHFITPFSYDGL--ESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKI 165
QVA+F + + L + LN LP DI + + FHAR+++K+K Y YKI
Sbjct: 64 LNQVANFQSD---EKLVEHKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKI 120
Query: 166 YNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFR 225
+N+ +PF R Y+ H KLN M+ AA++ VG HDF+AF N + + + V+ V+
Sbjct: 121 WNEEHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSM--VREVYT 178
Query: 226 FDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
DV+E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++
Sbjct: 179 LDVMEEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQI---N 235
Query: 286 LSAPPHGLCLVEVKY 300
A GL L V++
Sbjct: 236 CLAEASGLYLENVEF 250
>gi|229028278|ref|ZP_04184414.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1271]
gi|228733042|gb|EEL83888.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1271]
Length = 250
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 142/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 9 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 65
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI V ++ FHAR+++K+K Y YKI+N+
Sbjct: 66 QVANFQSDEKLVE-HKVKKYLNQYLPNDISVTDVEEVPDRFHARYNSKAKTYLYKIWNEE 124
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ DV+
Sbjct: 125 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVM 182
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 183 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPYILEAKQRNQI---NCLAE 239
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 240 ASGLYLENVEF 250
>gi|291528184|emb|CBK93770.1| pseudouridylate synthase I [Eubacterium rectale M104/1]
Length = 254
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 100/255 (39%), Positives = 143/255 (56%), Gaps = 14/255 (5%)
Query: 51 WRLVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++++AYDGTRY GWQ Q S TIQ ++ L + L + + ++G+ RTD GVHA G
Sbjct: 8 YKIIVAYDGTRYKGWQVQKSTDDTIQGKLQHVL---STLAGKPVEVIGSGRTDAGVHAVG 64
Query: 110 QVAHFITP--FSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
QVA F P FS D I LN LP DI V +IS FHAR++A SK Y Y I+
Sbjct: 65 QVASFHMPKHFSKD---EIFIWLNEHLPADIAVTDISNVPDRFHARYNAVSKTYVYTIHT 121
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
V D F+R Y Y L+T M++AA Y +G+HDF AF + + + V+++F D
Sbjct: 122 GIVSDVFRRKYVYDYDKPLDTDRMKKAAAYLLGEHDFKAFCGNKHMKK--STVRTIFSID 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ + GA + + G GFL +R + L+++G PD V ILA++DR A+ +
Sbjct: 180 IEKTGADIVISYTGDGFLQNMIRIITGTLIEVGDGRKNPDAVMGILASKDR---AQAGYT 236
Query: 288 APPHGLCLVEVKYNE 302
AP GL L V Y +
Sbjct: 237 APACGLSLERVDYGK 251
>gi|256847793|ref|ZP_05553238.1| tRNA pseudouridine synthase A [Lactobacillus coleohominis
101-4-CHN]
gi|256715482|gb|EEU30458.1| tRNA pseudouridine synthase A [Lactobacillus coleohominis
101-4-CHN]
Length = 253
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 144/255 (56%), Gaps = 12/255 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ AYDGT ++G+Q Q TI+ ++ + R+ K + ++G+ RTD GVHA
Sbjct: 3 RYKITFAYDGTNFSGFQIQPHKRTIEQTLKTIVNRMAKNPDPAISIIGSGRTDAGVHALN 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVAHF P+ +S+ ALN LP DI V++ EFHAR++A K Y Y++
Sbjct: 63 QVAHFDFPYHIPE-QSMVRALNSQLPLDIIVKKAEIVSNEFHARYNAHRKRYRYRVTQGE 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV----NVQRNDRLLNPVKSVFR 225
+DPF+R+Y H Y ++ M +AA+ VG HDF++FV + N R + K +
Sbjct: 122 FVDPFKRNYTAHFKYPVDIAHMNRAAQDLVGTHDFTSFVASGSQAKSNIRTIYEAKVYYE 181
Query: 226 FDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
+ + E G+GFLY QVR MVALLL+IG P D V ++LA +DR+E
Sbjct: 182 ----DHDHEVIFEFVGNGFLYNQVRIMVALLLEIGSGQRPVDDVQRVLAARDRQEA---R 234
Query: 286 LSAPPHGLCLVEVKY 300
++AP GL LV V Y
Sbjct: 235 MTAPASGLYLVNVDY 249
>gi|229137290|ref|ZP_04265906.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-ST26]
gi|228646193|gb|EEL02411.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-ST26]
Length = 250
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 141/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 9 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 65
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 66 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 124
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ DV+
Sbjct: 125 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVM 182
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 183 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQI---NCLAE 239
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 240 ASGLYLENVEF 250
>gi|229194805|ref|ZP_04321592.1| tRNA pseudouridine synthase A 2 [Bacillus cereus m1293]
gi|228588653|gb|EEK46684.1| tRNA pseudouridine synthase A 2 [Bacillus cereus m1293]
Length = 250
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 141/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 9 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 65
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 66 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 124
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ DV+
Sbjct: 125 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYALDVM 182
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 183 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQI---NCLAE 239
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 240 ASGLYLENVEF 250
>gi|284047733|ref|YP_003398072.1| tRNA pseudouridine synthase A [Acidaminococcus fermentans DSM
20731]
gi|283951954|gb|ADB46757.1| tRNA pseudouridine synthase A [Acidaminococcus fermentans DSM
20731]
Length = 245
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 138/249 (55%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDGTRY G+Q Q + +Q ++EKAL V K E + + A RTD GVHA GQV
Sbjct: 6 KATVAYDGTRYQGFQRQKNGVGVQQVLEKALTEVLK---EPILIKAAGRTDAGVHALGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
F T S E+ AL LPPDI +RE +FHARF A K Y YKIY +
Sbjct: 63 ISFATS-SRIPPENYRRALEPHLPPDIAIREAEVVRDDFHARFDAVDKTYQYKIYYSPLP 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
DP QR+ + KL+ M +AA +GKHDF++F N D +PV+++ ++
Sbjct: 122 DPTQRNTTWEIREKLDVEAMNRAAALLLGKHDFTSFKNQGSQD--TSPVRTLTEAHWVQD 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G L + G GFLYR VRN+V L+++G + +++A ++RK+ ++AP
Sbjct: 180 GNLYTFTITGDGFLYRMVRNIVGCLVRVGTGQWNEEDFARVMAAKNRKQA---GMAAPAQ 236
Query: 292 GLCLVEVKY 300
GL L+ V Y
Sbjct: 237 GLYLMHVSY 245
>gi|402299426|ref|ZP_10819037.1| tRNA pseudouridine synthase A [Bacillus alcalophilus ATCC 27647]
gi|401725464|gb|EJS98749.1| tRNA pseudouridine synthase A [Bacillus alcalophilus ATCC 27647]
Length = 251
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 143/248 (57%), Gaps = 8/248 (3%)
Query: 55 IAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHF 114
+AY+GT +AG+Q Q TIQ +E +L ++ K E+LR+ + RTD+ VHA GQV HF
Sbjct: 8 VAYEGTYFAGYQVQPGKRTIQGEIEASLKKIHK--GEELRIHSSGRTDSLVHATGQVFHF 65
Query: 115 ITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPF 174
T + + ALN LLP DIR+ E +FHAR+SA SK Y Y+I D F
Sbjct: 66 ETSLAIP-VSRWAKALNALLPADIRIIEAVEVSKDFHARYSAISKQYRYRILLTKEGDLF 124
Query: 175 QRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGAL 234
+R++ YH L+ +++AA++ +GKHDFSAF N +++ +++V R ++ +G
Sbjct: 125 RRNHCYHFTEMLDIEAIKEAAQHILGKHDFSAFCAA--NTSVIDKIRTVTRLELQHVGDE 182
Query: 235 LQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLC 294
L VEG GFLY VR MV LL++G P + I+ DR + K +AP HGL
Sbjct: 183 LLFIVEGDGFLYNMVRIMVGTLLEVGTGKRDPHELQAIIEGCDRTKAGK---TAPGHGLY 239
Query: 295 LVEVKYNE 302
L +V Y E
Sbjct: 240 LHQVNYPE 247
>gi|163938417|ref|YP_001643301.1| tRNA pseudouridine synthase A [Bacillus weihenstephanensis KBAB4]
gi|423485714|ref|ZP_17462396.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BtB2-4]
gi|423491438|ref|ZP_17468082.1| tRNA pseudouridine synthase A 2 [Bacillus cereus CER057]
gi|423501769|ref|ZP_17478386.1| tRNA pseudouridine synthase A 2 [Bacillus cereus CER074]
gi|423515265|ref|ZP_17491746.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuA2-4]
gi|423596514|ref|ZP_17572541.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD048]
gi|423664454|ref|ZP_17639619.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VDM022]
gi|423671861|ref|ZP_17646865.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VDM034]
gi|423677678|ref|ZP_17652613.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VDM062]
gi|163860614|gb|ABY41673.1| tRNA pseudouridine synthase A [Bacillus weihenstephanensis KBAB4]
gi|401152216|gb|EJQ59655.1| tRNA pseudouridine synthase A 2 [Bacillus cereus CER074]
gi|401159782|gb|EJQ67162.1| tRNA pseudouridine synthase A 2 [Bacillus cereus CER057]
gi|401167391|gb|EJQ74675.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuA2-4]
gi|401219684|gb|EJR26336.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD048]
gi|401290702|gb|EJR96391.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VDM034]
gi|401293025|gb|EJR98674.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VDM022]
gi|401306148|gb|EJS11657.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VDM062]
gi|402440978|gb|EJV72956.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BtB2-4]
Length = 245
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG RY GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARYKGWQRLGNNDNTIQGKIESI---ISEMVGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITSVEEVPDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H +LN M++AA++ VG HDF+AF N + + + V+ V+ DV
Sbjct: 120 HTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVS 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + D +P IL + R ++ A
Sbjct: 178 EESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLEADAIPNILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|423398620|ref|ZP_17375821.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG2X1-1]
gi|423409524|ref|ZP_17386673.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG2X1-3]
gi|401646788|gb|EJS64403.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG2X1-1]
gi|401655144|gb|EJS72679.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG2X1-3]
Length = 245
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 137/251 (54%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E + + E E ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDSTIQGKIESVISEMVGKETE---IIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFKSDEKLVE-HKLKKYLNQYLPNDISITNVEEVSDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M+QAA++ VG HDF+AF N + + + V+ V+ DVI
Sbjct: 120 HTNPFMRKYSMHVNKKLNVESMKQAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVI 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E + + V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 178 EEAGFVLIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLESVEF 245
>gi|170017912|ref|YP_001728831.1| tRNA pseudouridine synthase A [Leuconostoc citreum KM20]
gi|414596266|ref|ZP_11445842.1| tRNA pseudouridine synthase A [Leuconostoc citreum LBAE E16]
gi|421876113|ref|ZP_16307673.1| tRNA pseudouridine synthase A [Leuconostoc citreum LBAE C10]
gi|421878492|ref|ZP_16309972.1| tRNA pseudouridine synthase A [Leuconostoc citreum LBAE C11]
gi|238688937|sp|B1MVY3.1|TRUA_LEUCK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|169804769|gb|ACA83387.1| tRNA pseudouridine synthase A [Leuconostoc citreum KM20]
gi|372558148|emb|CCF23793.1| tRNA pseudouridine synthase A [Leuconostoc citreum LBAE C10]
gi|390447619|emb|CCF26092.1| tRNA pseudouridine synthase A [Leuconostoc citreum LBAE C11]
gi|390483199|emb|CCF27903.1| tRNA pseudouridine synthase A [Leuconostoc citreum LBAE E16]
Length = 260
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 153/260 (58%), Gaps = 13/260 (5%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPP-----TIQCIVEKALIRVTKLEREDLRLVGASRTDTG 104
+++ ++AYDG+ + G+Q QT T+Q + KA+ ++ K +++VGASRTDTG
Sbjct: 3 RYKAIVAYDGSNFFGFQVQTKSGVEVQRTVQGELNKAVNQMAKQPVTPIKVVGASRTDTG 62
Query: 105 VHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYK 164
VHA+GQV HF PF + + + LN LLP DI ++ ++ +FHARFS +K Y Y+
Sbjct: 63 VHAFGQVVHFDLPFDINPV-GVSKGLNTLLPRDILIKAVTKVSDDFHARFSTHAKRYFYR 121
Query: 165 IYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF 224
+ A DPF+RHY H + L+T+ +++A +G+HDF++F ++ + V+++
Sbjct: 122 VSTTAFTDPFKRHYTGHFHWHLDTSRIQEALPDLIGEHDFASF--AASGNQTASTVRTIT 179
Query: 225 RFDVIEM--GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELA 282
+IE L EG+ FLY Q+R MV +LL+IG + +++A +DR E A
Sbjct: 180 SAQLIEKPDEQELVFVFEGNAFLYNQIRIMVGVLLEIGNGRREIHDIQRLIAVKDR-EQA 238
Query: 283 KYALSAPPHGLCLVEVKYNE 302
++ +AP GL L E+ Y E
Sbjct: 239 RF--TAPASGLYLDEIDYGE 256
>gi|18311353|ref|NP_563287.1| tRNA pseudouridine synthase A [Clostridium perfringens str. 13]
gi|42559846|sp|Q8XHV5.1|TRUA2_CLOPE RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 2; AltName: Full=tRNA-uridine
isomerase I 2
gi|18146037|dbj|BAB82077.1| tRNA-pseudouridine synthase I [Clostridium perfringens str. 13]
Length = 244
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 141/250 (56%), Gaps = 11/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L I YDGT Y GWQ Q TIQ VE+A+ +VTK E++ ++G+SRTD+GVHA V
Sbjct: 5 KLTIEYDGTSYFGWQKQPIGNTIQQKVEEAIKKVTK---EEVEILGSSRTDSGVHAKAYV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F T + G ++ AALN LP DI + +FHAR+ K Y Y I N
Sbjct: 62 ANFKTNSNIPG-KNFKAALNSKLPKDIVIINSEEVAEDFHARYMTTGKTYCYTILNREEP 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQR-NDRLLNPVKSVFRFDVIE 230
+R+Y YH +L+ M++A +YF+GKHDF AF QR + V+++ +
Sbjct: 121 PALERNYVYHVKKQLDVESMKEACKYFLGKHDFKAF---QRPGGTVKTSVRTITDIHIET 177
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G +++ V GFLY VR +V LL++G+ P+ + +++ + DRK K + PP
Sbjct: 178 EGNKIKIYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRK---KAGICVPP 234
Query: 291 HGLCLVEVKY 300
GLCL +V Y
Sbjct: 235 TGLCLEKVFY 244
>gi|291460751|ref|ZP_06600141.1| tRNA pseudouridine synthase A [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291416710|gb|EFE90429.1| tRNA pseudouridine synthase A [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 266
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 137/254 (53%), Gaps = 8/254 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ RL IAYDGT Y GWQ+Q TI+ + +AL + L E++ L GASRTD GVHA
Sbjct: 3 RIRLDIAYDGTNYHGWQYQEGQSTIEGELRRALSEL--LPGEEIGLTGASRTDAGVHARQ 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
A F T G + ALN LP DIR+ A +FH RFS K+Y Y+I
Sbjct: 61 NTACFDTKSRIPG-ANFSMALNCRLPEDIRILRSMEAGEDFHPRFSPHKKVYEYRIGRSR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLN--PVKSVFRFD 227
+ DP +R Y + + L+ + MR AAE VG+HDF +F N + V++++
Sbjct: 120 IPDPLKRLYCFPFSFPLSLSEMRLAAEELVGEHDFRSFANPDSQVLMHGGAAVRTLYELS 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ E G L L EGSGFLY +R + LL+IG +P+ILA +DR+ + +
Sbjct: 180 LREEGEELILHFEGSGFLYHMIRILTGTLLEIGSGRRRAAEIPEILAARDRR---RAGFT 236
Query: 288 APPHGLCLVEVKYN 301
AP GLCL+ + Y
Sbjct: 237 APAKGLCLLALCYE 250
>gi|241895121|ref|ZP_04782417.1| pseudouridylate synthase [Weissella paramesenteroides ATCC 33313]
gi|241871617|gb|EER75368.1| pseudouridylate synthase [Weissella paramesenteroides ATCC 33313]
Length = 249
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 146/253 (57%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ IAYDGT + GWQ Q + T+Q +E + ++ K E +R+ G+ RTD VHA G
Sbjct: 3 RYKATIAYDGTDFFGWQVQPNKRTVQAEMELVVNKMAKNPAEHIRVQGSGRTDARVHAKG 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVAHF PF +++ L+ +LP DI ++++ +FHA+F+A +K Y Y+
Sbjct: 63 QVAHFDLPFDIPA-DAVRKGLSTMLPYDIGIKKVEKVSDDFHAQFNAHNKTYFYRFSTSE 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF--RFD 227
+DPF+R+Y H +LN LM+QA +VG+HD+ +FV + V++V+ +
Sbjct: 122 YIDPFKRNYTGHWHRRLNPELMQQAIGDYVGEHDWLSFVASGYQQK--TTVRTVYSAKMW 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V + E G+GFLY Q+R MV +LL+IG P D + ++ +DR++ +
Sbjct: 180 VKPEEEEIWFEFSGNGFLYNQIRIMVGVLLEIGNGVRPVDDIKRLFEVKDRQQA---QFT 236
Query: 288 APPHGLCLVEVKY 300
AP GL L++VKY
Sbjct: 237 APAQGLYLMDVKY 249
>gi|312874027|ref|ZP_07734062.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2052A-d]
gi|312874727|ref|ZP_07734746.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2053A-b]
gi|325912360|ref|ZP_08174756.1| tRNA pseudouridine synthase A [Lactobacillus iners UPII 143-D]
gi|329920629|ref|ZP_08277316.1| tRNA pseudouridine synthase A [Lactobacillus iners SPIN 1401G]
gi|349611897|ref|ZP_08891127.1| tRNA pseudouridine synthase A [Lactobacillus sp. 7_1_47FAA]
gi|311089472|gb|EFQ47897.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2053A-b]
gi|311090367|gb|EFQ48776.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2052A-d]
gi|325475831|gb|EGC79001.1| tRNA pseudouridine synthase A [Lactobacillus iners UPII 143-D]
gi|328935887|gb|EGG32347.1| tRNA pseudouridine synthase A [Lactobacillus iners SPIN 1401G]
gi|348608362|gb|EGY58347.1| tRNA pseudouridine synthase A [Lactobacillus sp. 7_1_47FAA]
Length = 260
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 151/253 (59%), Gaps = 7/253 (2%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++L++AYDGT + G+Q Q + TIQ ++E AL+++TK + + + G+ RTD GVHA G
Sbjct: 3 RYKLILAYDGTLFHGFQKQPNQRTIQGVIEDALLKMTK--GKHVIVHGSGRTDAGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + +++ ALN L+P DI + +FH ++S K+K Y Y I
Sbjct: 61 QVIHFDYPGNVIPAKNMLLALNALMPRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQSR 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
DPF+R+Y H YKL+ M++AA Y +GKHDF++F ++++ V+++F ++
Sbjct: 121 FTDPFRRNYTGHCPYKLDMLKMKKAATYLLGKHDFTSF--AASGGQIVDKVRTIFYINLE 178
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G + L+V G GFLY VR + LL+ IG + V KI+ ++R+++ +AP
Sbjct: 179 QHGDEIVLDVIGDGFLYNMVRIITGLLIDIGHGQKEVEDVEKIILAKNRQQVRN---TAP 235
Query: 290 PHGLCLVEVKYNE 302
GL L V Y++
Sbjct: 236 ASGLYLYHVFYDD 248
>gi|406987977|gb|EKE08138.1| hypothetical protein ACD_17C00326G0001 [uncultured bacterium]
Length = 220
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 135/224 (60%), Gaps = 8/224 (3%)
Query: 78 VEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPD 137
++KAL V R + L G+ RTD GVHA GQVAHF + S+D ++ LN LLP D
Sbjct: 1 MQKALQTVL---RHPVELTGSGRTDAGVHARGQVAHFDSNASFD-TATLRFHLNCLLPSD 56
Query: 138 IRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEY 197
IRV++I A FHAR+S K KIY+Y ++ VM+PF++ Y+YH N L++ A+++
Sbjct: 57 IRVKKIEPAEGGFHARYSTKRKIYYYYLFTHPVMNPFRKLYSYHIRGPFNEKLLQTASQH 116
Query: 198 FVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLL 257
FVG H+F++F NV+ N + ++++FR D+ LL LE EG GFLY+ VRN+ L+
Sbjct: 117 FVGTHNFTSFANVKPNAP-EDQIRTIFRIDIRTSEDLLLLEFEGDGFLYKMVRNITGTLI 175
Query: 258 QIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEVKYN 301
I I + +P I A +DR+ + +AP GL L V Y
Sbjct: 176 DIATGKIALEDLPTIFAAKDRRYAGR---TAPAQGLFLETVIYT 216
>gi|423602052|ref|ZP_17578052.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD078]
gi|401227916|gb|EJR34444.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD078]
Length = 245
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG RY GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARYKGWQRLGNNDNTIQGKIESI---ISEMVGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITSVEEVPDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H +LN M++AA++ VG HDF+AF N + + + V+ V+ DV
Sbjct: 120 HTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVS 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + D +P IL + R ++ A
Sbjct: 178 EESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLEADAIPSILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|206974202|ref|ZP_03235119.1| tRNA pseudouridine synthase A [Bacillus cereus H3081.97]
gi|217958024|ref|YP_002336568.1| tRNA pseudouridine synthase A [Bacillus cereus AH187]
gi|222094223|ref|YP_002528280.1| tRNA pseudouridine synthase a [Bacillus cereus Q1]
gi|375282560|ref|YP_005102997.1| tRNA pseudouridine synthase A [Bacillus cereus NC7401]
gi|423356685|ref|ZP_17334287.1| tRNA pseudouridine synthase A 2 [Bacillus cereus IS075]
gi|423375581|ref|ZP_17352917.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AND1407]
gi|423571396|ref|ZP_17547638.1| tRNA pseudouridine synthase A 2 [Bacillus cereus MSX-A12]
gi|423577718|ref|ZP_17553837.1| tRNA pseudouridine synthase A 2 [Bacillus cereus MSX-D12]
gi|423607751|ref|ZP_17583644.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD102]
gi|206747442|gb|EDZ58832.1| tRNA pseudouridine synthase A [Bacillus cereus H3081.97]
gi|217065270|gb|ACJ79520.1| tRNA pseudouridine synthase A [Bacillus cereus AH187]
gi|221238278|gb|ACM10988.1| tRNA-pseudouridylate synthase I (tRNA pseudouridine synthase A)
[Bacillus cereus Q1]
gi|358351085|dbj|BAL16257.1| tRNA pseudouridine synthase A [Bacillus cereus NC7401]
gi|401077272|gb|EJP85612.1| tRNA pseudouridine synthase A 2 [Bacillus cereus IS075]
gi|401091845|gb|EJP99984.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AND1407]
gi|401200766|gb|EJR07645.1| tRNA pseudouridine synthase A 2 [Bacillus cereus MSX-A12]
gi|401204422|gb|EJR11239.1| tRNA pseudouridine synthase A 2 [Bacillus cereus MSX-D12]
gi|401239948|gb|EJR46356.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD102]
Length = 245
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 141/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ DV+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|423638472|ref|ZP_17614124.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD156]
gi|401270788|gb|EJR76807.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD156]
Length = 245
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 141/253 (55%), Gaps = 10/253 (3%)
Query: 49 FKWRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHA 107
+ ++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 2 YNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHA 58
Query: 108 WGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N
Sbjct: 59 LNQVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWN 117
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
+ +PF R Y+ H KLN M+ AA++ VG HDF+AF N + + + V+ V+ D
Sbjct: 118 EEHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLD 175
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V+E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++
Sbjct: 176 VMEEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQI---NCL 232
Query: 288 APPHGLCLVEVKY 300
A GL L V++
Sbjct: 233 AEASGLYLENVEF 245
>gi|423370307|ref|ZP_17347729.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD142]
gi|401074246|gb|EJP82651.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD142]
Length = 245
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 142/253 (56%), Gaps = 14/253 (5%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG RY GWQ + TIQ E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARYKGWQRLGNNDNTIQGKTESI---ISEMVGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGL--ESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
QVA+F + + L + LN LP DI + + FHAR+++K+K Y YKI+N
Sbjct: 61 QVANFQSD---EKLVEHKVKKYLNQYLPNDISITSVEEVSDRFHARYNSKAKTYLYKIWN 117
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
+ +PF R Y+ H +LN M++AA++ +G HDF+AF N + + + V+ V+ D
Sbjct: 118 EEHTNPFMRKYSMHVNKQLNVKSMKEAAKHLIGSHDFTAFSNAKSKKKSM--VREVYTLD 175
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V E +Q+ V G+GFL+ VR +V L+++G + D +P IL + R ++
Sbjct: 176 VSEESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLEADAIPNILEEKQRNQI---NCL 232
Query: 288 APPHGLCLVEVKY 300
A GL L ++++
Sbjct: 233 AEASGLYLEKIEF 245
>gi|374578976|ref|ZP_09652070.1| pseudouridylate synthase I [Desulfosporosinus youngiae DSM 17734]
gi|374415058|gb|EHQ87493.1| pseudouridylate synthase I [Desulfosporosinus youngiae DSM 17734]
Length = 259
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/255 (39%), Positives = 144/255 (56%), Gaps = 12/255 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSP--PTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
RL +AYDGT Y G+Q Q PTIQ +E KL E++ L A RTD GVHA G
Sbjct: 5 RLKLAYDGTNYHGFQRQVESVGPTIQGTLESVW---AKLVDEEVTLAMAGRTDAGVHALG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
Q+ +F+T + I A N LLP DIR+ + +F+AR+SAK K Y Y + N
Sbjct: 62 QIVNFMTSARIPE-DKIPKAFNSLLPRDIRIHQAECVSDDFNARWSAKWKRYDYLLDNKP 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ D F+R YA H LN TLM+QAA + G+H+F F + + ++++R V
Sbjct: 121 IPDLFKRLYAAHEPIPLNITLMQQAARFLEGRHNFKTFAASGGDSKRFE--RTIYRCQVS 178
Query: 230 EM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E+ L+++ G GFLY VR +V L+ +GK I P +P+I+A+Q+RK + + A
Sbjct: 179 ELENQLIRVSCVGDGFLYHMVRIIVGTLMDVGKGRILPGEIPEIIASQERK---RARVIA 235
Query: 289 PPHGLCLVEVKYNEE 303
P GL LV V Y++E
Sbjct: 236 PAQGLTLVHVNYSDE 250
>gi|229154192|ref|ZP_04282315.1| tRNA pseudouridine synthase A 2 [Bacillus cereus ATCC 4342]
gi|228629282|gb|EEK85986.1| tRNA pseudouridine synthase A 2 [Bacillus cereus ATCC 4342]
Length = 250
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 142/253 (56%), Gaps = 10/253 (3%)
Query: 49 FKWRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHA 107
+ ++L I YDG R+ GWQ + TIQ +E V+++ +++ ++G SRTD GVHA
Sbjct: 7 YNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---VSEMVGKEIEIIGCSRTDAGVHA 63
Query: 108 WGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N
Sbjct: 64 LNQVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWN 122
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
+ +PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +
Sbjct: 123 EEHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLE 180
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V+E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++
Sbjct: 181 VMEEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQI---NCL 237
Query: 288 APPHGLCLVEVKY 300
A GL L V++
Sbjct: 238 AEASGLYLENVEF 250
>gi|83591242|ref|YP_431251.1| tRNA pseudouridine synthase A [Moorella thermoacetica ATCC 39073]
gi|123766692|sp|Q2RFT1.1|TRUA_MOOTA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|83574156|gb|ABC20708.1| tRNA pseudouridine synthase A [Moorella thermoacetica ATCC 39073]
Length = 246
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 102/251 (40%), Positives = 135/251 (53%), Gaps = 11/251 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSP--PTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++ +AYDG+ YAGWQ Q PT+Q V AL R+T E++ V A RTD GVHA G
Sbjct: 5 KITLAYDGSNYAGWQVQPEAHGPTVQGEVAAALKRLTG---EEITPVAAGRTDAGVHARG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV F T +E ALN +LP DI E P+FHAR+ AK K Y Y IYN+
Sbjct: 62 QVISFSTRARIP-VERWPLALNSVLPADIAALEAVEVAPDFHARYCAKRKWYRYTIYNNR 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
V D F R Y++H L+ M +AA Y G HDF +F R + V + V
Sbjct: 121 VPDVFCRRYSWHLRQPLDVIAMARAAAYLQGCHDFRSFCAAGSPVRHFE--RQVQQASVS 178
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G + +V GFLY VR MV L++IG+ + P+ +P ILA + R+ K +AP
Sbjct: 179 QNGPFIYFDVIADGFLYHMVRIMVGTLVEIGRRRLVPEAIPAILAARSRE---KAGPTAP 235
Query: 290 PHGLCLVEVKY 300
GLCL V+Y
Sbjct: 236 ARGLCLERVEY 246
>gi|419720324|ref|ZP_14247561.1| tRNA pseudouridine(38-40) synthase [Lachnoanaerobaculum saburreum
F0468]
gi|383303509|gb|EIC94957.1| tRNA pseudouridine(38-40) synthase [Lachnoanaerobaculum saburreum
F0468]
Length = 245
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 148/251 (58%), Gaps = 9/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ RL+++YDGT Y GWQ Q + T++ ++ +A ++KL E++ ++GASRTD+GVHA+G
Sbjct: 3 RIRLIVSYDGTNYCGWQKQPNGITVEEVLNRA---ISKLTGEEIEVIGASRTDSGVHAYG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
VA F T + A+N LP DIR++ ++H R + K Y Y+I N
Sbjct: 60 NVAVFDTNVRM-AADKFAFAINQRLPDDIRIQYSDEVESDWHPRKNDCIKTYTYRILNRK 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ P +R YA+ + L+ MR+A+ YF+G HDF++F + + + +P+++VF +V+
Sbjct: 119 IDIPTERLYAHFCYFNLDVEKMREASGYFIGTHDFTSFCS--QKSQASSPIRTVFSLEVL 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ ++ + V G GFLY +R + L+++G PP + +I+ ++RK + + P
Sbjct: 177 QDEDMITIVVRGDGFLYNMIRIIAGTLIKVGMGVYPPSHITEIMKAKERKFAGQ---TMP 233
Query: 290 PHGLCLVEVKY 300
GL LVE++Y
Sbjct: 234 AKGLTLVEIEY 244
>gi|407476024|ref|YP_006789901.1| tRNA pseudouridine synthase A [Exiguobacterium antarcticum B7]
gi|407060103|gb|AFS69293.1| tRNA pseudouridine synthase A [Exiguobacterium antarcticum B7]
Length = 249
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 139/253 (54%), Gaps = 11/253 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I YDGT Y+G+Q Q + TIQ ++EK L R+ K ++++G+ RTD VHA G
Sbjct: 3 RFKCTIQYDGTDYSGYQVQPNGLTIQEVIEKTLERMHK---HPVKIIGSGRTDARVHAQG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF T S S+ ALN LLP DIR+R+ +F AR+ K Y Y +
Sbjct: 60 QVIHFNTELSI-APASMVKALNTLLPDDIRIRDCKEVASDFEARYDVVGKEYRYFVRQ-- 116
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
D F+RH + Y L+ +R Y VG HDFS+F + N V++++ ++I
Sbjct: 117 TEDAFRRHQSVLIPYSLDVAQIRLGLAYLVGTHDFSSFCVAKTETD--NRVRTIYEAELI 174
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E G L GSGFLY Q+R MV LL +G+ P+ + ++L +DR ++AP
Sbjct: 175 EQGDELIFRFHGSGFLYNQIRIMVGTLLDVGRGRFAPEDIKRMLEAKDRNVA---GVTAP 231
Query: 290 PHGLCLVEVKYNE 302
PHGL L EV Y E
Sbjct: 232 PHGLYLWEVFYPE 244
>gi|423514198|ref|ZP_17490714.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuA2-1]
gi|402442881|gb|EJV74798.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuA2-1]
Length = 245
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 141/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG RY GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARYKGWQRLGNNDNTIQGKIESI---ISEMVGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITSVEEVPDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H +LN M++AA++ VG HDF+AF N + + + V+ V+ DV
Sbjct: 120 HTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVS 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + D +P IL + R ++ A
Sbjct: 178 EESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLEADAIPNILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L ++++
Sbjct: 235 ASGLYLEKIEF 245
>gi|410454358|ref|ZP_11308297.1| tRNA pseudouridine synthase A [Bacillus bataviensis LMG 21833]
gi|409932173|gb|EKN69140.1| tRNA pseudouridine synthase A [Bacillus bataviensis LMG 21833]
Length = 246
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 94/252 (37%), Positives = 142/252 (56%), Gaps = 8/252 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I YDG+ ++G+Q Q + T+Q ++E L ++ K ++++G+ RTD GVHA G
Sbjct: 3 RYKCIITYDGSGFSGYQVQPNKRTVQSVLEAVLAKMHK--GNPIKVLGSGRTDAGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF +P E ALN +LP DI VR + FHARF A K Y Y ++ A
Sbjct: 61 QVIHFDSPLLIPE-ERWETALNSMLPEDISVRSVMKVESSFHARFDAVGKEYRYVLHLSA 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
DPFQR+YA Y LN M+ A++YF+G HDF++F + + + + ++++ D +
Sbjct: 120 QRDPFQRNYACRYPYPLNLEDMQAASKYFLGSHDFTSFCSAKTE--VADKIRTIEAIDFM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
L L G GFLY VR +V LL +G P+ +P IL +DR+ K +AP
Sbjct: 178 IEDDHLTLRFVGDGFLYNMVRILVGTLLAVGSGDFLPEDMPVILEKKDRRVAGK---TAP 234
Query: 290 PHGLCLVEVKYN 301
+GL L EV Y
Sbjct: 235 ANGLYLWEVFYE 246
>gi|47567253|ref|ZP_00237967.1| tRNA pseudouridine synthase A [Bacillus cereus G9241]
gi|47556096|gb|EAL14433.1| tRNA pseudouridine synthase A [Bacillus cereus G9241]
Length = 245
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 141/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ DV+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 178 EEAGCVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|225573074|ref|ZP_03781829.1| hypothetical protein RUMHYD_01265 [Blautia hydrogenotrophica DSM
10507]
gi|225039560|gb|EEG49806.1| tRNA pseudouridine synthase A [Blautia hydrogenotrophica DSM 10507]
Length = 245
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 142/250 (56%), Gaps = 11/250 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L++AYDGT Y GWQ Q + TIQ + + L ++L E++ +GASRTD GVHA G VA
Sbjct: 6 LIVAYDGTNYCGWQVQPNGITIQGELNRCL---SELLGEEIETIGASRTDAGVHAMGNVA 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVP-EFHARFSAKSKIYHYKIYNDAVM 171
F T G E I ALN LP DIR+ ++S +P +FH R+ K Y Y+I N
Sbjct: 63 VFDTETRMPG-EKISYALNQRLPEDIRI-QLSEEMPMDFHPRYCDSVKTYEYRILNRRFQ 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P +R Y+Y YKL+ MR+A Y +G+HDF++F ++ + V+++ +V
Sbjct: 121 IPTERLYSYFYHYKLDEKKMREATSYLIGRHDFASFCGA--GAQVKSTVRTIRSVEVERF 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G ++ + + G GFLY VR + L++IG PP+ + +IL +DR+ +AP
Sbjct: 179 GDMVTIRISGEGFLYNMVRIIAGTLIEIGNGQYPPERMQEILDARDREWAGP---TAPAK 235
Query: 292 GLCLVEVKYN 301
GL L+ ++Y
Sbjct: 236 GLTLLGIQYE 245
>gi|229056264|ref|ZP_04195685.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH603]
gi|228721069|gb|EEL72607.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH603]
Length = 268
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 141/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG RY GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 27 YKLTIQYDGARYKGWQRLGNNDNTIQGKIESI---ISEMVGKEIEIIGCSRTDAGVHALN 83
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 84 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITSVEEVPDRFHARYNSKAKTYLYKIWNEE 142
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H +LN M++AA++ VG HDF+AF N + + + V+ V+ DV
Sbjct: 143 HTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVS 200
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + D +P IL + R ++ A
Sbjct: 201 EESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLEVDAIPNILEEKQRNQI---NCLAE 257
Query: 290 PHGLCLVEVKY 300
GL L ++++
Sbjct: 258 ASGLYLEKIEF 268
>gi|118476179|ref|YP_893330.1| tRNA pseudouridine synthase A [Bacillus thuringiensis str. Al
Hakam]
gi|228925681|ref|ZP_04088768.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228931917|ref|ZP_04094811.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228944241|ref|ZP_04106617.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229089549|ref|ZP_04220816.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-42]
gi|229120089|ref|ZP_04249341.1| tRNA pseudouridine synthase A 2 [Bacillus cereus 95/8201]
gi|118415404|gb|ABK83823.1| tRNA pseudouridine synthase A [Bacillus thuringiensis str. Al
Hakam]
gi|228663327|gb|EEL18915.1| tRNA pseudouridine synthase A 2 [Bacillus cereus 95/8201]
gi|228693765|gb|EEL47461.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-42]
gi|228815392|gb|EEM61637.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228827702|gb|EEM73442.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228833956|gb|EEM79506.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 250
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 142/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 9 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMIGKEIEIIGCSRTDAGVHALN 65
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 66 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 124
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +V+
Sbjct: 125 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYSLEVM 182
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P+IL + R ++ A
Sbjct: 183 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQI---NCLAE 239
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 240 ASGLYLENVEF 250
>gi|110802389|ref|YP_699630.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101]
gi|110682890|gb|ABG86260.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101]
Length = 244
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 141/250 (56%), Gaps = 11/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L I YDGT Y GWQ Q TIQ VE+A+ +VTK E++ ++G+SRTD+GVHA V
Sbjct: 5 KLTIEYDGTSYFGWQKQPIGNTIQQKVEEAIKKVTK---EEVEILGSSRTDSGVHAKAYV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F T + G ++ AALN LP DI + +FHAR+ K Y Y I N
Sbjct: 62 ANFKTNSNIPG-KNFKAALNSKLPKDIVIMNSEEVAEDFHARYMTTGKTYCYTILNREEP 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQR-NDRLLNPVKSVFRFDVIE 230
+R+Y YH +L+ M++A +YF+GKHDF AF QR + V+++ +
Sbjct: 121 PALERNYVYHVKKQLDVESMKEACKYFLGKHDFKAF---QRPGGTVKTSVRTITDIHIEI 177
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G +++ V GFLY VR +V LL++G+ P+ + +++ + DRK K + PP
Sbjct: 178 EGNKIKIYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRK---KAGICVPP 234
Query: 291 HGLCLVEVKY 300
GLCL +V Y
Sbjct: 235 TGLCLEKVFY 244
>gi|39997968|ref|NP_953919.1| tRNA pseudouridine synthase A [Geobacter sulfurreducens PCA]
gi|409913323|ref|YP_006891788.1| tRNA pseudouridines 38,39,40 synthase [Geobacter sulfurreducens
KN400]
gi|42559718|sp|P60350.1|TRUA_GEOSL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|39984913|gb|AAR36269.1| tRNA pseudouridines 38,39,40 synthase [Geobacter sulfurreducens
PCA]
gi|298506909|gb|ADI85632.1| tRNA pseudouridines 38,39,40 synthase [Geobacter sulfurreducens
KN400]
Length = 244
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/252 (38%), Positives = 139/252 (55%), Gaps = 15/252 (5%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L++ YDGT YAGWQ Q + +IQ +VE AL R+ K E +RL + RTD GVHA G V
Sbjct: 5 KLILEYDGTNYAGWQLQPNGLSIQEVVEGALARLLK---EPVRLRASGRTDAGVHARGMV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T S L + LN LLPPDI VR A+P F+ RF+A K Y Y I+
Sbjct: 62 AAFDTDRSIP-LRAFSDGLNALLPPDIAVRSADEALPGFNPRFAATGKHYRYTIHRGERR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P R ++H LN MR+AA + G+ DF++F R ++ R D +E+
Sbjct: 121 SPLVRLQSWHVRGALNLAAMREAARHLTGERDFASFRTAGCAAR-----TTIRRVDAVEI 175
Query: 232 ---GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
G +L ++V GSGFL VR MV L+++G+ + P+ V +++ + +A
Sbjct: 176 SDDGEMLTVDVHGSGFLRNMVRIMVGTLVEVGRGKLTPEHVAQMVVCPG---VVPAGPTA 232
Query: 289 PPHGLCLVEVKY 300
PP GLCL +V++
Sbjct: 233 PPQGLCLQKVRF 244
>gi|374672511|dbj|BAL50402.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis
IO-1]
Length = 253
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 144/254 (56%), Gaps = 8/254 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ IAYDGT +AG+Q QT+ T+Q +EK L ++ E + L G+ RTD+GVHA+G
Sbjct: 3 RYKATIAYDGTDFAGFQSQTNQRTVQEEIEKVLTKLNSFE--PVILQGSGRTDSGVHAFG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF LE + L+ P DI V+++ ++HAR+ K Y Y + N
Sbjct: 61 QVIHFDLKGKVRDLERLRFGLDTQTPADIAVKKVELVPDDWHARYQKHEKTYEYYLENSI 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
PFQRH + Y LN M++A VG+HDF+ F + + V+++++ ++I
Sbjct: 121 TRSPFQRHSKAYFRYPLNFERMQEAMSKLVGEHDFTGF--TASGSSVDDKVRTIYQAEII 178
Query: 230 EMGAL-LQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ + G+GFLY+QVRNMV +++IG + +P + KIL +++R + A +A
Sbjct: 179 RLDEENFKFIFRGNGFLYKQVRNMVGTVIKIGNDRMPVSQIDKILTSKNR-DFA--GPTA 235
Query: 289 PPHGLCLVEVKYNE 302
P GL L EVKY E
Sbjct: 236 APEGLYLKEVKYAE 249
>gi|384178444|ref|YP_005564206.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324324528|gb|ADY19788.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 245
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 142/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVQDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +V+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLEVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL ++ R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILESKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|218282056|ref|ZP_03488361.1| hypothetical protein EUBIFOR_00932 [Eubacterium biforme DSM 3989]
gi|218216974|gb|EEC90512.1| hypothetical protein EUBIFOR_00932 [Eubacterium biforme DSM 3989]
Length = 247
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 100/252 (39%), Positives = 147/252 (58%), Gaps = 11/252 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +++YDG YAGWQ Q + IQ ++E+AL ++TK E++ +V + RTD GVHA+GQV
Sbjct: 4 KALVSYDGFNYAGWQKQENALGIQQVIEEALYKITK---ENVDVVASGRTDAGVHAFGQV 60
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF T + ++ ALN LLP DIR+ + +FHARFSA K Y Y D +
Sbjct: 61 FHFETNKNIPAIQ-YERALNALLPKDIRILKTEEMPDDFHARFSAVGKRYDYYCSYD-IK 118
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNP-VKSVFRFDVIE 230
+PF Y KL+ M+ A++ F+G HDF++F + + + R P VK++ ++IE
Sbjct: 119 NPFNYKYRNLLTKKLDIEAMKNASKVFLGSHDFTSFASSKIDPR--KPRVKTISNIEIIE 176
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G + EG+GFL QVR M L+ +G+ I D V ++L +D K +Y +A
Sbjct: 177 EGMDVHFIFEGTGFLRYQVRMMTGTLIAVGQHKIGVDDVQRMLDAKD-KSACRY--NASS 233
Query: 291 HGLCLVEVKYNE 302
GL LVEVKYNE
Sbjct: 234 CGLYLVEVKYNE 245
>gi|399889227|ref|ZP_10775104.1| tRNA pseudouridine synthase A [Clostridium arbusti SL206]
Length = 245
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 142/253 (56%), Gaps = 16/253 (6%)
Query: 52 RLVIAYDGTRYAGWQFQT-SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
++ I YDG+RY GWQ Q TIQ +E L +K+ ED++++G RTD GVHA
Sbjct: 5 KMTIEYDGSRYKGWQKQKYGESTIQYKIENVL---SKMTGEDIKVIGCGRTDLGVHAKNY 61
Query: 111 VAHFITPFSYDGLESIHAALNGL---LPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
+A+F T SI A L+ L LP DI V+ + A FHAR++ KSK Y Y+I N
Sbjct: 62 IANFHTECEL----SIDAMLDYLYEFLPEDIVVKYMEDAAERFHARYNVKSKTYVYRINN 117
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
+ + F R Y YH+ KL+ MR AAE +G HDF +F N++ N + + V+ + D
Sbjct: 118 NKFRNVFDRKYTYHTDEKLDLDEMRNAAEVLIGTHDFQSFTNLKPNGK--STVRIINYID 175
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+IE ++++EV G+GFL VR + LL++ K + V K L D K+ ++Y
Sbjct: 176 IIEKEGIVEVEVNGNGFLLNMVRIIAGTLLEVAKGKLKAIDVEKTL---DEKKRSEYGPI 232
Query: 288 APPHGLCLVEVKY 300
A GL L +V+Y
Sbjct: 233 AKAKGLFLKDVQY 245
>gi|386734334|ref|YP_006207515.1| tRNA pseudouridine synthase A 2 [Bacillus anthracis str. H9401]
gi|384384186|gb|AFH81847.1| tRNA pseudouridine synthase A 2 [Bacillus anthracis str. H9401]
Length = 250
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 139/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E + + E E ++G SRTD GVHA
Sbjct: 9 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETE---IIGCSRTDAGVHALN 65
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 66 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 124
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +V+
Sbjct: 125 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYSLEVM 182
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P+IL + R ++ A
Sbjct: 183 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQI---NCLAE 239
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 240 ASGLYLENVEF 250
>gi|226322792|ref|ZP_03798310.1| hypothetical protein COPCOM_00564 [Coprococcus comes ATCC 27758]
gi|225208773|gb|EEG91127.1| tRNA pseudouridine synthase A [Coprococcus comes ATCC 27758]
Length = 259
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/257 (37%), Positives = 141/257 (54%), Gaps = 11/257 (4%)
Query: 51 WRLVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+R+ +AYDGT Y GWQ Q + T+Q I+E+ R++++ + + G+ RTD+GVHA G
Sbjct: 4 YRITVAYDGTAYRGWQRQENTELTVQGILER---RISEIAGKKTVVSGSGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
Q D ++S LN LLP DIRV +IS +FHAR SA K Y Y+I
Sbjct: 61 QECSLYLEQEID-MDSFKKQLNALLPEDIRVLDISREKRDFHARKSAVGKCYEYQIDLRD 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
M+ F R Y +H + ++ M QAAEY +G HDFSAF +++ + + V++++ ++
Sbjct: 120 KMEVFHRKYRFHFPHPVDIAAMEQAAEYLMGTHDFSAFTDLKEDK---DTVRTIYAVGIV 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
L L G GFLY VR + LL +G I + +P+IL +DRK K AP
Sbjct: 177 YEKDTLTLSWIGDGFLYHMVRILTGTLLDVGIGKIKAEEIPEILKAKDRK---KSGFPAP 233
Query: 290 PHGLCLVEVKYNEEHLR 306
GL L V Y E L+
Sbjct: 234 AKGLFLGRVFYTEAELK 250
>gi|376264444|ref|YP_005117156.1| tRNA pseudouridine synthase A [Bacillus cereus F837/76]
gi|364510244|gb|AEW53643.1| tRNA pseudouridine synthase A [Bacillus cereus F837/76]
Length = 245
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 142/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMIGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHNRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +V+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYSLEVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P+IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|169335662|ref|ZP_02862855.1| hypothetical protein ANASTE_02082 [Anaerofustis stercorihominis DSM
17244]
gi|169258400|gb|EDS72366.1| tRNA pseudouridine synthase A [Anaerofustis stercorihominis DSM
17244]
Length = 244
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 144/248 (58%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
+ I YDG Y GWQ Q + +++ EK + KL +E+++L G+ RTD+GVHA GQ A
Sbjct: 6 ITIEYDGKNYVGWQMQNNGISVE---EKVKTAIEKLVKEEVKLYGSGRTDSGVHALGQAA 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
F T S + + +N LP DIRV + +FHAR+SAK K Y Y IYN ++M+
Sbjct: 63 SFYTN-SNISADKLPYGINSFLPEDIRVIKAEEKEEDFHARYSAKGKEYVYLIYNRSIMN 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P + A H YKL+ M++A++ +G HDF+ F+ + + + V+ ++ D+ +
Sbjct: 122 PIYKGRASHVFYKLDLDKMKRASKSLIGIHDFAGFMGSGSD--VKSTVREIYDIDITKDN 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
L+++++ GSGFLY VR +VA L+ IG+ + + +IL T+ R + ++AP G
Sbjct: 180 DLIKIKISGSGFLYNMVRIIVASLIDIGRGRFDENRIEEILETKQR---SMANVTAPAVG 236
Query: 293 LCLVEVKY 300
L L +V Y
Sbjct: 237 LYLNKVFY 244
>gi|423526021|ref|ZP_17502473.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuA4-10]
gi|401164847|gb|EJQ72179.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuA4-10]
Length = 245
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 141/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG RY GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARYKGWQRLGNNDNTIQGKIESV---ISEMIGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITSVEEVPDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H +LN M++AA++ VG HDF+AF N + + + V+ V+ DV
Sbjct: 120 HTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVS 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ + G+GFL+ VR +V L+++G + D +P IL + R ++ A
Sbjct: 178 EEAGFVQIRISGNGFLHNMVRKIVGALIEVGLGQLEADAIPNILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L ++++
Sbjct: 235 ASGLYLEKIEF 245
>gi|238923689|ref|YP_002937205.1| tRNA pseudouridine synthase A [Eubacterium rectale ATCC 33656]
gi|238875364|gb|ACR75071.1| tRNA pseudouridine synthase A [Eubacterium rectale ATCC 33656]
Length = 276
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 100/255 (39%), Positives = 144/255 (56%), Gaps = 14/255 (5%)
Query: 51 WRLVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++++AYDGTRY GWQ Q S TIQ ++ L + L + + ++G+ RTD GVHA G
Sbjct: 30 YKIIVAYDGTRYKGWQVQKSTDDTIQGKLQHVL---STLAGKPVEVIGSGRTDAGVHAVG 86
Query: 110 QVAHFITP--FSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
QVA F P FS D I LN LP DI V +IS FHAR++A SK Y Y I+
Sbjct: 87 QVASFHMPKHFSKD---EIFIWLNEHLPADIAVTDISNVPDRFHARYNAVSKTYVYTIHT 143
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
V D F+R Y Y L+T M++AA Y +G+HDF AF + + + V+++F D
Sbjct: 144 GIVSDVFRRKYVYDYDKPLDTDRMKKAAAYLLGEHDFKAFCGNRHMKK--STVRTIFSID 201
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ + GA + + G GFL +R + L+++G PD V +ILA++DR A+ +
Sbjct: 202 IEKTGADIVISYTGDGFLQNMIRIITGTLIEVGDGRKNPDAVMEILASKDR---AQAGYT 258
Query: 288 APPHGLCLVEVKYNE 302
AP GL L V Y +
Sbjct: 259 APACGLRLERVDYGK 273
>gi|407474680|ref|YP_006789080.1| tRNA pseudouridine synthase A [Clostridium acidurici 9a]
gi|407051188|gb|AFS79233.1| tRNA pseudouridine synthase A [Clostridium acidurici 9a]
Length = 246
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 148/250 (59%), Gaps = 11/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L I YDGT + GWQ Q + +IQ +E A+ +TK E++ +VG+ RTD+ VHA+GQV
Sbjct: 7 KLTIEYDGTNFCGWQKQPNGQSIQQALEDAIYSITK---ENVNIVGSGRTDSKVHAFGQV 63
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVP-EFHARFSAKSKIYHYKIYNDAV 170
A+F T S E A+N LP DI V++ S VP +FH+R+ A K Y Y IYND
Sbjct: 64 ANFYTS-SKIPQEKFTNAINSKLPSDISVKD-SIEVPCDFHSRYGALGKEYKYIIYNDRT 121
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
P R+Y+YH Y+LN M+ A E F G +DF F++ + + ++++ + ++ +
Sbjct: 122 RSPILRNYSYHVPYELNIGHMKNAIESFRGTYDFRGFMST--GSSVKSTIRTINKAELNK 179
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
++++ ++G+GFLY VR + L++IG I + V +I+ +QDRK +APP
Sbjct: 180 KDEIIEITLQGNGFLYNMVRIITGTLVEIGMGKICHEKVFEIIMSQDRKCAGH---TAPP 236
Query: 291 HGLCLVEVKY 300
GL L +V Y
Sbjct: 237 QGLYLNQVFY 246
>gi|49183490|ref|YP_026742.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Sterne]
gi|165870784|ref|ZP_02215437.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0488]
gi|167634709|ref|ZP_02393028.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0442]
gi|167640831|ref|ZP_02399090.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0193]
gi|170688574|ref|ZP_02879780.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0465]
gi|170707209|ref|ZP_02897665.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0389]
gi|177654958|ref|ZP_02936652.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0174]
gi|227816641|ref|YP_002816650.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CDC 684]
gi|229600408|ref|YP_002865093.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0248]
gi|254686878|ref|ZP_05150736.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CNEVA-9066]
gi|254725958|ref|ZP_05187740.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A1055]
gi|254738895|ref|ZP_05196597.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Western
North America USA6153]
gi|254743721|ref|ZP_05201406.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Kruger B]
gi|254744486|ref|ZP_05202165.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Kruger B]
gi|254756260|ref|ZP_05208289.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Vollum]
gi|254762079|ref|ZP_05213928.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Australia
94]
gi|270000592|ref|YP_003329030.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Ames]
gi|291612202|ref|YP_003541016.1| tRNA pseudouridine synthase A [Bacillus anthracis str. 'Ames
Ancestor']
gi|421509894|ref|ZP_15956795.1| tRNA pseudouridine synthase A [Bacillus anthracis str. UR-1]
gi|421639061|ref|ZP_16079655.1| tRNA pseudouridine synthase A [Bacillus anthracis str. BF1]
gi|62901431|sp|Q6I3T8.1|TRUA2_BACAN RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 2; AltName: Full=tRNA-uridine
isomerase I 2
gi|49177417|gb|AAT52793.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Sterne]
gi|164713618|gb|EDR19142.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0488]
gi|167511225|gb|EDR86612.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0193]
gi|167529783|gb|EDR92531.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0442]
gi|170127987|gb|EDS96858.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0389]
gi|170667434|gb|EDT18191.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0465]
gi|172080343|gb|EDT65431.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0174]
gi|224552835|gb|ACN55049.1| tRNA pseudouridine synthase A [Bacillus anthracis str. 'Ames
Ancestor']
gi|227002712|gb|ACP12455.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CDC 684]
gi|229264816|gb|ACQ46453.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0248]
gi|269850281|gb|ACZ49994.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Ames]
gi|401820068|gb|EJT19237.1| tRNA pseudouridine synthase A [Bacillus anthracis str. UR-1]
gi|403393976|gb|EJY91218.1| tRNA pseudouridine synthase A [Bacillus anthracis str. BF1]
Length = 245
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 139/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E + + E E ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETE---IIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +V+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYSLEVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P+IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|423613864|ref|ZP_17589723.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD107]
gi|401240464|gb|EJR46865.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD107]
Length = 245
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 142/253 (56%), Gaps = 14/253 (5%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG RY GWQ + TIQ +E ++++ +++ +VG SRTD GVHA
Sbjct: 4 YKLTIQYDGARYKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIVGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGL--ESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
QVA+F + + L + LN LP DI + + FHAR+++K+K Y YKI+N
Sbjct: 61 QVANFKSD---EKLVEHKVKKYLNQYLPNDISITNVEEVSDRFHARYNSKAKTYLYKIWN 117
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
+ +PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +
Sbjct: 118 EEHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLE 175
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V E +Q+ + G+GFL+ VR +V L+++G + + +P IL + R ++
Sbjct: 176 VSEEAGFVQIRISGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQI---NCL 232
Query: 288 APPHGLCLVEVKY 300
A GL L V++
Sbjct: 233 AEASGLYLENVEF 245
>gi|307244438|ref|ZP_07526548.1| tRNA pseudouridine synthase A [Peptostreptococcus stomatis DSM
17678]
gi|306492195|gb|EFM64238.1| tRNA pseudouridine synthase A [Peptostreptococcus stomatis DSM
17678]
Length = 253
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 141/251 (56%), Gaps = 9/251 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
LV+AY+GTRY GWQ Q P IQ +E A + ++++ + G+ RTD GVHA GQVA
Sbjct: 8 LVVAYEGTRYCGWQKQPDSPGIQGELEYACTQA--FNKKNINITGSGRTDAGVHALGQVA 65
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F + ++ I LN LP DI V EFHAR SA K Y Y+IY +
Sbjct: 66 NFTVDTTIP-VDKIPEVLNNRLPKDIAVLRAQEVKSEFHARHSAHKKTYRYQIYPSRIRS 124
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
PF + +AY Y L+ M++ + +G+HDF F++ + + + V++++R D+ + G
Sbjct: 125 PFLKDFAYQVKYDLDLDRMKEEIIHLLGQHDFKGFMSSGSD--IKSTVRTIYRADIYKRG 182
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
L+ +EVEG+GFLY VR + ++ IG+ I + I+ + R A+ +APP G
Sbjct: 183 DLIVIEVEGNGFLYNMVRIIAGTMVDIGRGKITESL-RDIIGSGVR---ARAGHTAPPQG 238
Query: 293 LCLVEVKYNEE 303
L LV V Y E+
Sbjct: 239 LFLVGVDYPED 249
>gi|196034640|ref|ZP_03102048.1| tRNA pseudouridine synthase A [Bacillus cereus W]
gi|196045298|ref|ZP_03112530.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB108]
gi|218901631|ref|YP_002449465.1| tRNA pseudouridine synthase A [Bacillus cereus AH820]
gi|300119051|ref|ZP_07056762.1| tRNA pseudouridine synthase A [Bacillus cereus SJ1]
gi|301052143|ref|YP_003790354.1| tRNA pseudouridine synthase A [Bacillus cereus biovar anthracis
str. CI]
gi|423553655|ref|ZP_17529982.1| tRNA pseudouridine synthase A 2 [Bacillus cereus ISP3191]
gi|195992683|gb|EDX56643.1| tRNA pseudouridine synthase A [Bacillus cereus W]
gi|196023882|gb|EDX62557.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB108]
gi|218540034|gb|ACK92432.1| tRNA pseudouridine synthase A [Bacillus cereus AH820]
gi|298723667|gb|EFI64398.1| tRNA pseudouridine synthase A [Bacillus cereus SJ1]
gi|300374312|gb|ADK03216.1| tRNA pseudouridine synthase A [Bacillus cereus biovar anthracis
str. CI]
gi|401183428|gb|EJQ90544.1| tRNA pseudouridine synthase A 2 [Bacillus cereus ISP3191]
Length = 245
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 142/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMIGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +V+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYSLEVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P+IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|229015811|ref|ZP_04172787.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1273]
gi|229022018|ref|ZP_04178574.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1272]
gi|228739274|gb|EEL89714.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1272]
gi|228745470|gb|EEL95496.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1273]
Length = 250
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 141/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 9 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 65
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 66 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVQDRFHARYNSKAKTYLYKIWNEE 124
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +V+
Sbjct: 125 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLEVM 182
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 183 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEGKQRNQI---NCLAE 239
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 240 ASGLYLESVEF 250
>gi|229143213|ref|ZP_04271645.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-ST24]
gi|229177012|ref|ZP_04304407.1| tRNA pseudouridine synthase A 2 [Bacillus cereus 172560W]
gi|228606487|gb|EEK63913.1| tRNA pseudouridine synthase A 2 [Bacillus cereus 172560W]
gi|228640294|gb|EEK96692.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-ST24]
Length = 250
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 9 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 65
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 66 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 124
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M+ AA++ VG HDF+AF N + + + V+ V+ DV+
Sbjct: 125 HTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVM 182
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 183 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQI---NCLAE 239
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 240 ASGLYLENVEF 250
>gi|307702068|ref|ZP_07639075.1| tRNA pseudouridine synthase A [Streptococcus mitis NCTC 12261]
gi|307616555|gb|EFN95745.1| tRNA pseudouridine synthase A [Streptococcus mitis NCTC 12261]
Length = 249
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 95/255 (37%), Positives = 141/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q QT ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQTHARSVQEEIEKTLTRLNK--GKAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M++A + G HDF+ F D++ ++ R D
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQEAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLRVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|228956904|ref|ZP_04118685.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228802747|gb|EEM49583.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 250
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 9 YKLTIQYDGVRFKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 65
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 66 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 124
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M+ AA++ VG HDF+AF N + + + V+ V+ DV+
Sbjct: 125 HTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVM 182
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 183 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQI---NCLAE 239
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 240 ASGLYLENVEF 250
>gi|229042328|ref|ZP_04190078.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH676]
gi|228726987|gb|EEL78194.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH676]
Length = 250
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 137/251 (54%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E + + E E ++G SRTD GVHA
Sbjct: 9 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETE---IIGCSRTDAGVHALN 65
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 66 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 124
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M+ AA++ VG HDF+AF N + + + V+ V+ DV+
Sbjct: 125 HTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVM 182
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 183 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQI---NCLAE 239
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 240 ASGLYLENVEF 250
>gi|412988146|emb|CCO17482.1| tRNA pseudouridine synthase A [Bathycoccus prasinos]
Length = 314
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 104/271 (38%), Positives = 146/271 (53%), Gaps = 21/271 (7%)
Query: 51 WRLVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+R +++YDGT Y G+Q Q TIQ +E+ L+++T L+RE L L A RTD GVHA
Sbjct: 33 YRGIVSYDGTNYFGFQKQGEDKITIQSELERCLMQITCLDRELLCLGAAGRTDAGVHARK 92
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF T + A N LL D+RV EI+ P FH+RF A K Y Y I
Sbjct: 93 QVFHFYTKEPLKDELNFMRACNRLLNEDVRVMEIAKPHPMFHSRFHAIEKTYRYTIDFGL 152
Query: 170 VMDPFQRHYAYHSVYK-LNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLL--NPVKSVFRF 226
PF R A Y+ + L+ +A + FVG HDF+AF+N R+ + L N ++++ F
Sbjct: 153 PHSPFHRKTALSVGYREYDMKLLEEACKVFVGTHDFAAFMNRSRDGKNLERNSERTIYSF 212
Query: 227 DVIEM--------------GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKI 272
DVI +L+ L V G+GFLY+QVRNMV +L + D +
Sbjct: 213 DVIRGGGEEEGGERYEDPSSSLVYLYVTGNGFLYKQVRNMVGAILSVAGGRYTIDDLKLF 272
Query: 273 LATQDRKELAKYALSAPPHGLCLVEVKYNEE 303
+ +DRK + ++AP GLCL +VKY +E
Sbjct: 273 MEKKDRKLI---PMAAPAKGLCLYDVKYPDE 300
>gi|312109293|ref|YP_003987609.1| tRNA pseudouridine synthase A [Geobacillus sp. Y4.1MC1]
gi|423718408|ref|ZP_17692590.1| tRNA pseudouridine synthase A [Geobacillus thermoglucosidans
TNO-09.020]
gi|311214394|gb|ADP72998.1| tRNA pseudouridine synthase A [Geobacillus sp. Y4.1MC1]
gi|383365218|gb|EID42519.1| tRNA pseudouridine synthase A [Geobacillus thermoglucosidans
TNO-09.020]
Length = 248
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 142/250 (56%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ ++YDGT + G+Q Q T+Q +E+AL ++ K + +R+ + RTD GVHA+GQV
Sbjct: 6 KCTLSYDGTHFFGYQIQPGKRTVQGELEQALEQIHK--GKAIRVTASGRTDAGVHAYGQV 63
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF T S E ALN LLP DI +++ A P FHARFSA +K Y YK+
Sbjct: 64 IHFDTFLSLSP-EQWKKALNALLPDDIVIKDAQEAAPSFHARFSATAKEYRYKVRIAQER 122
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F RHY YH Y L+ M +A G HDF++F + + + + + V+++++ D+
Sbjct: 123 DVFLRHYCYHYPYPLDMEAMGRALRLIEGTHDFTSFCSAKTD--VDDRVRTIYKADMTVR 180
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
LL+ G+GFLY VR +V +L++G+ D + LA +DR+ K +APP
Sbjct: 181 DDLLEFRFIGNGFLYNMVRIIVGTILEVGQGKRSVDSISSALAAKDRRFAGK---TAPPQ 237
Query: 292 GLCLVEVKYN 301
GL L +V Y+
Sbjct: 238 GLYLWKVYYD 247
>gi|15672468|ref|NP_266642.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis
Il1403]
gi|281490978|ref|YP_003352958.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis
KF147]
gi|385830005|ref|YP_005867818.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis
CV56]
gi|418038482|ref|ZP_12676811.1| tRNA pseudouridine(38-40) synthase [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|13878837|sp|Q9CI80.1|TRUA_LACLA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|12723367|gb|AAK04584.1|AE006284_2 tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis
Il1403]
gi|281374736|gb|ADA64256.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis
KF147]
gi|326406013|gb|ADZ63084.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis
CV56]
gi|354693130|gb|EHE92907.1| tRNA pseudouridine(38-40) synthase [Lactococcus lactis subsp.
cremoris CNCM I-1631]
Length = 253
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 144/254 (56%), Gaps = 8/254 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ IAYDGT +AG+Q QT+ T+Q +EK L ++ E + L G+ RTD+GVHA+G
Sbjct: 3 RYKATIAYDGTDFAGFQSQTNQRTVQKEIEKILTKLNSFE--PVILQGSGRTDSGVHAFG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF LE + L+ P DI V+++ ++HAR+ K Y Y + N
Sbjct: 61 QVIHFDLKGKVRDLERLRFGLDTQTPADIAVKKVELVPDDWHARYQKHEKTYEYYLENSI 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
PFQRH + Y LN M++A VG+HDF+ F + + V+++++ ++I
Sbjct: 121 TRSPFQRHSKAYFRYPLNFERMQEAMSKLVGEHDFTGF--TASGSSVDDKVRTIYQAEII 178
Query: 230 EMGAL-LQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ + G+GFLY+QVRNMV +++IG + +P + KIL +++R + A +A
Sbjct: 179 RLDEENFKFIFRGNGFLYKQVRNMVGTVIKIGNDRMPVSQIDKILTSKNR-DFA--GPTA 235
Query: 289 PPHGLCLVEVKYNE 302
P GL L EVKY E
Sbjct: 236 APEGLYLKEVKYAE 249
>gi|226309840|ref|YP_002769734.1| tRNA pseudouridine synthase A [Brevibacillus brevis NBRC 100599]
gi|254789606|sp|C0ZIL2.1|TRUA_BREBN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|226092788|dbj|BAH41230.1| tRNA pseudouridine synthase A [Brevibacillus brevis NBRC 100599]
Length = 244
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 144/251 (57%), Gaps = 9/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ R V+AYDGT ++G+Q Q T+Q +E AL RVT ED+++ G+ RTD GVHA G
Sbjct: 3 RLRCVLAYDGTDFSGFQVQPDQVTVQGEIEAALNRVTG---EDIQVFGSGRTDAGVHARG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF T S ++ LN LP I +R + FHARF + K Y Y I N+
Sbjct: 60 QVIHFDTA-SNIPMDKWRFVLNNQLPDSIVIRTVEEVDASFHARFDVQVKEYRYCIDNNP 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
V D F+ YA H + L+ M+QAA Y VG+HDF++F + + + + V++V+ V
Sbjct: 119 VADVFRHRYADHVRFPLDVDAMQQAAHYLVGEHDFTSFCSAKT--YVEDKVRTVYGLSVE 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
++G + + G+GFLY VR +V L+++G+ P + +ILA DR++ K +AP
Sbjct: 177 KIGDEVWVTCRGNGFLYNMVRIIVGTLVEVGQGKRNPAELREILAACDREKAGK---TAP 233
Query: 290 PHGLCLVEVKY 300
GL + EV Y
Sbjct: 234 AKGLTMWEVVY 244
>gi|422417078|ref|ZP_16494035.1| tRNA pseudouridine synthase A [Listeria innocua FSL J1-023]
gi|313622273|gb|EFR92777.1| tRNA pseudouridine synthase A [Listeria innocua FSL J1-023]
Length = 248
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 143/253 (56%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG+ + G+Q Q + T+Q +EKAL ++ K + +R+ + RTDTGVHA G
Sbjct: 3 RYKAIISYDGSGFFGYQVQPNTRTVQAEIEKALEKMHK--GKSVRITASGRTDTGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + E AL + P DI + A +FHARF K Y Y I
Sbjct: 61 QVIHFDSELDITA-EKFQKALQVMTPFDISFLTVEEAQADFHARFGTIGKEYRYVIKRTK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ DPF R++A H Y+L+ M+QA+E +G+HDF++F + R +R + V++++ D
Sbjct: 120 IFDPFSRNFALHYPYELDIEKMKQASERLIGEHDFTSFCSA-RTER-DSKVRTLYSIDFY 177
Query: 230 EMGA-LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E A L + +G+GFLY VR + LL G+ I PD + K L DR++L + +A
Sbjct: 178 EEDAETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDITKALLAHDRQKLI--SKTA 235
Query: 289 PPHGLCLVEVKYN 301
PP GL L V Y
Sbjct: 236 PPQGLYLWRVDYE 248
>gi|52144819|ref|YP_082010.1| tRNA pseudouridine synthase A [Bacillus cereus E33L]
gi|62901422|sp|Q63GF1.1|TRUA2_BACCZ RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 2; AltName: Full=tRNA-uridine
isomerase I 2
gi|51978288|gb|AAU19838.1| tRNA-pseudouridylate synthase I (tRNA pseudouridine synthase A)
[Bacillus cereus E33L]
Length = 245
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 142/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMIGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +V+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYSLEVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P+IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|302669997|ref|YP_003829957.1| tRNA pseudouridine synthase A [Butyrivibrio proteoclasticus B316]
gi|302394470|gb|ADL33375.1| tRNA pseudouridine synthase A TruA1 [Butyrivibrio proteoclasticus
B316]
Length = 262
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 136/249 (54%), Gaps = 10/249 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
L ++YDGT Y GW QTS P TI+ + +A+ R+T E + ++GASRTD GVHA+G V
Sbjct: 9 LTVSYDGTAYNGWAEQTSTPNTIEGELNRAIERLTG---EPVHVIGASRTDAGVHAYGNV 65
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T S G + A LN LP DIR+ FH R K Y Y+I+N +M
Sbjct: 66 AVFDTASSIPGDRFVFA-LNHELPQDIRIVNSREVATSFHPRHCDTEKTYEYRIFNSQIM 124
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
DP +R Y H L+ M AA Y VG+HDF++F NV+ + L+ V+++ V
Sbjct: 125 DPTKRFYTCHFSMPLDIGRMNAAAHYLVGEHDFTSFCNVE--SQALSHVRTIKDIRVTRN 182
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G + + V G+GFLY VR + L+QIG+ P V IL D+K +AP
Sbjct: 183 GDEVVISVTGNGFLYNMVRIIAGTLMQIGRGKGTPAEVKDIL---DKKYRGAAGPTAPAE 239
Query: 292 GLCLVEVKY 300
GL LVE K+
Sbjct: 240 GLFLVEYKF 248
>gi|254556054|ref|YP_003062471.1| tRNA pseudouridine synthase A [Lactobacillus plantarum JDM1]
gi|308180048|ref|YP_003924176.1| tRNA-pseudouridine synthase I [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|380032005|ref|YP_004888996.1| tRNA pseudouridine synthase A [Lactobacillus plantarum WCFS1]
gi|418274636|ref|ZP_12890134.1| tRNA pseudouridine synthase A [Lactobacillus plantarum subsp.
plantarum NC8]
gi|448820634|ref|YP_007413796.1| tRNA pseudouridine synthase A [Lactobacillus plantarum ZJ316]
gi|38258756|sp|Q88XU9.1|TRUA_LACPL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|254044981|gb|ACT61774.1| tRNA pseudouridine synthase A [Lactobacillus plantarum JDM1]
gi|308045539|gb|ADN98082.1| tRNA-pseudouridine synthase I [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|342241248|emb|CCC78482.1| tRNA pseudouridine synthase A [Lactobacillus plantarum WCFS1]
gi|376010202|gb|EHS83528.1| tRNA pseudouridine synthase A [Lactobacillus plantarum subsp.
plantarum NC8]
gi|448274131|gb|AGE38650.1| tRNA pseudouridine synthase A [Lactobacillus plantarum ZJ316]
Length = 262
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 149/261 (57%), Gaps = 12/261 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++V+AYDGT +AG+Q Q T++ +V KA+ ++ K E + + GA RTD GVHA+G
Sbjct: 4 RYKVVLAYDGTNFAGFQRQPHQRTVEQVVTKAVNKMAKDPVEPIVIYGAGRTDAGVHAFG 63
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
Q HF P+ + E + LN +LP D V+ +S +FHAR+ K Y Y+ Y +
Sbjct: 64 QTLHFDLPYEINP-EGVRRGLNSMLPMDTIVKAVSIVPNDFHARYDTVGKRYWYRAYQNE 122
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRND--RLLNPVKSVFR 225
+DPF+RHY H + + ++QA G+HDFS FV Q +D R + K+
Sbjct: 123 FVDPFKRHYTGHFKFAADIDRIQQAIGDLEGRHDFSTFVASGSQAHDHVREIYSAKAWAL 182
Query: 226 FDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
D E +Q E GSGFLY QVR MVA+L++IG+ D +P +LA +DR++
Sbjct: 183 PDERE----IQFEFCGSGFLYNQVRIMVAVLMEIGQGRRAVDCIPALLAAKDREQARG-- 236
Query: 286 LSAPPHGLCLVEVKYNEEHLR 306
+AP GL + +V Y + L+
Sbjct: 237 -TAPAAGLYMKKVYYEQNELQ 256
>gi|338730830|ref|YP_004660222.1| tRNA pseudouridine synthase A [Thermotoga thermarum DSM 5069]
gi|335365181|gb|AEH51126.1| tRNA pseudouridine synthase A [Thermotoga thermarum DSM 5069]
Length = 260
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 150/253 (59%), Gaps = 10/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
K+ VI+YDG + G+Q Q T+Q ++E+AL R+ K + + +V A RTDTGVHA G
Sbjct: 3 KFAAVISYDGNNFFGFQLQKDVRTVQGVIEQALERIFKTK---ISVVCAGRTDTGVHAVG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV F P+ E++ ALN LP D+ VR++ +F+ RF A +IYHY IYN
Sbjct: 60 QVIAFDCPYDIPP-ENMKNALNANLPDDVYVRKVIEVPKDFNPRFCATRRIYHYFIYNGK 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ F R Y + Y+L+ MR+AA+Y G+HDF AF + N++ + V++++R ++
Sbjct: 119 TPNVFTRKYYWWFPYELDVNKMREAAKYLEGEHDFKAFAKTEGNEK--STVRTIYRIRIL 176
Query: 230 EM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ L+ + VEG FL R VRN+V L+++G P + +IL +++R LA +A
Sbjct: 177 RLRKNLILIRVEGRSFLRRMVRNIVGALVKVGVGVWEPIKIKEILESRNR-SLA--PATA 233
Query: 289 PPHGLCLVEVKYN 301
P HGL L V+++
Sbjct: 234 PAHGLYLYSVEFS 246
>gi|325294776|ref|YP_004281290.1| tRNA pseudouridine synthase A [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065224|gb|ADY73231.1| tRNA pseudouridine synthase A [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 250
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L I Y GT Y GWQ PTIQ + K L R+ + ++L GASRTD GVHA+GQV
Sbjct: 5 KLTIEYLGTNYFGWQILPEKPTIQGEIIKVLERILQ---HPVKLTGASRTDAGVHAFGQV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F T L + +ALNGLLPPDI++ + EF +R AK K Y Y+I+N V
Sbjct: 62 ANFKTKKEIP-LYKLQSALNGLLPPDIKIISVEEVPLEFDSRRWAKGKRYRYRIFNRKVP 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
PF+ ++ Y+L+ +LM +A E+ +G DF++F RN +NPV++V ++++
Sbjct: 121 SPFEYKRSWFVPYQLDISLMEKAKEFLIGTFDFTSFSKSDRNVD-INPVRTVDNIEIVKK 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
+ + G FL VR MVA L+++GK + P+ + +I ++RK A + APP
Sbjct: 180 ESHIDFIFYGRSFLRHMVRIMVATLVEVGKGKLRPEDIKEIREKKNRK-FAPFL--APPD 236
Query: 292 GLCLVEVKYN 301
GL L +V Y+
Sbjct: 237 GLYLEKVYYD 246
>gi|317123065|ref|YP_004103068.1| tRNA pseudouridine synthase A [Thermaerobacter marianensis DSM
12885]
gi|315593045|gb|ADU52341.1| tRNA pseudouridine synthase A [Thermaerobacter marianensis DSM
12885]
Length = 298
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 99/251 (39%), Positives = 138/251 (54%), Gaps = 9/251 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
R V+AYDGT +AGWQ Q T+Q +VE AL R+ +R+ A RTD GVHA QV
Sbjct: 47 RAVLAYDGTDFAGWQRQPRQRTVQQVVEDALERLLG---HPVRVTAAGRTDAGVHARAQV 103
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
H+ TP + ++ + AL GLLP D+ E A P FHAR+SA+ K Y Y ++ D V
Sbjct: 104 IHWRTPRPFP-VDRLVPALRGLLPADVVAVEAGEAPPGFHARYSARRKTYAYHVWRDPVP 162
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
DP R + +H L+ M +AA G HDF+ F R ++++R V E
Sbjct: 163 DPLHRRWQWHLPLDLDVDAMVEAARRLEGTHDFAPFKAAGSPVRRTR--RTLYRCAVEER 220
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G LL+ +E GFL R +V L++IG+ D V ILA + R++LA +AP H
Sbjct: 221 GPLLRFVLEADGFLMHMARGIVGTLVEIGRGRWQADRVEAILA-EGRRDLA--GPTAPAH 277
Query: 292 GLCLVEVKYNE 302
GL L +V Y++
Sbjct: 278 GLVLWQVVYDD 288
>gi|423632398|ref|ZP_17608144.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD154]
gi|401261276|gb|EJR67438.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD154]
Length = 245
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGVRFKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M+ AA++ VG HDF+AF N + + + V+ V+ DV+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|423578822|ref|ZP_17554933.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD014]
gi|401219753|gb|EJR26404.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD014]
Length = 245
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 143/255 (56%), Gaps = 14/255 (5%)
Query: 49 FKWRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHA 107
+ ++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 2 YNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMFGKEIEIIGCSRTDAGVHA 58
Query: 108 WGQVAHFITPFSYDGL--ESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKI 165
QVA+F + + L + LN LP DI + + FHAR+++K+K Y YKI
Sbjct: 59 LNQVANFQSD---EKLVEHKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKI 115
Query: 166 YNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFR 225
+N+ +PF R Y+ H KLN M+ AA++ VG HDF+AF N + + + V+ V+
Sbjct: 116 WNEEHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSM--VREVYT 173
Query: 226 FDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
DV+E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++
Sbjct: 174 LDVMEEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEEIPNILEEKQRNQI---N 230
Query: 286 LSAPPHGLCLVEVKY 300
A GL L V++
Sbjct: 231 CLAEASGLYLENVEF 245
>gi|331002224|ref|ZP_08325743.1| tRNA pseudouridine synthase A [Lachnospiraceae oral taxon 107 str.
F0167]
gi|330411318|gb|EGG90734.1| tRNA pseudouridine synthase A [Lachnospiraceae oral taxon 107 str.
F0167]
Length = 245
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 147/251 (58%), Gaps = 9/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ RL+++YDGT Y GWQ Q + TI+ ++ A +TKL ED+ ++GASRTD+GVHA+G
Sbjct: 3 RIRLIVSYDGTNYCGWQKQPNGITIEEVLNNA---ITKLTGEDIEVIGASRTDSGVHAYG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
+A F T + + A+N LP DIR++ +H R + K Y Y+I N
Sbjct: 60 NIAVFDTN-ARIAADKFAFAINQRLPEDIRIQYSDEVESGWHPRKNDCIKTYTYRILNRK 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ P +R YA+ + L+ MR+A+ YF+G HDF++F + + + +P++++F +++
Sbjct: 119 IDIPTERLYAHFCYFNLDVEKMREASGYFIGTHDFTSFCS--QKSQASSPIRTIFSLEIL 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ ++ + + G GFLY +R + L+++G PP + +I+ ++RK + + P
Sbjct: 177 QDEDMVTIVIRGDGFLYNMIRIIAGTLIKVGMGVYPPSHITEIMKAKNRKLAGQ---TMP 233
Query: 290 PHGLCLVEVKY 300
GL LVE++Y
Sbjct: 234 AKGLTLVEIEY 244
>gi|30018678|ref|NP_830309.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 14579]
gi|206967868|ref|ZP_03228824.1| tRNA pseudouridine synthase A [Bacillus cereus AH1134]
gi|218230891|ref|YP_002365270.1| tRNA pseudouridine synthase A [Bacillus cereus B4264]
gi|229068175|ref|ZP_04201482.1| tRNA pseudouridine synthase A 2 [Bacillus cereus F65185]
gi|229108094|ref|ZP_04237719.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock1-15]
gi|229125922|ref|ZP_04254947.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-Cer4]
gi|296501252|ref|YP_003662952.1| tRNA pseudouridine synthase A [Bacillus thuringiensis BMB171]
gi|423415688|ref|ZP_17392808.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG3O-2]
gi|423422657|ref|ZP_17399688.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG3X2-2]
gi|423428520|ref|ZP_17405524.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG4O-1]
gi|423644765|ref|ZP_17620381.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD166]
gi|423653368|ref|ZP_17628667.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD200]
gi|42559783|sp|Q813Z9.1|TRUA2_BACCR RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 2; AltName: Full=tRNA-uridine
isomerase I 2
gi|29894219|gb|AAP07510.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 14579]
gi|206736788|gb|EDZ53935.1| tRNA pseudouridine synthase A [Bacillus cereus AH1134]
gi|218158848|gb|ACK58840.1| tRNA pseudouridine synthase A [Bacillus cereus B4264]
gi|228657580|gb|EEL13393.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-Cer4]
gi|228675369|gb|EEL30588.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock1-15]
gi|228714989|gb|EEL66857.1| tRNA pseudouridine synthase A 2 [Bacillus cereus F65185]
gi|296322304|gb|ADH05232.1| tRNA pseudouridine synthase A [Bacillus thuringiensis BMB171]
gi|401095423|gb|EJQ03481.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG3O-2]
gi|401119161|gb|EJQ26987.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG3X2-2]
gi|401124740|gb|EJQ32502.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG4O-1]
gi|401269381|gb|EJR75414.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD166]
gi|401301532|gb|EJS07120.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD200]
Length = 245
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M+ AA++ VG HDF+AF N + + + V+ V+ DV+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|423646553|ref|ZP_17622123.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD169]
gi|401287245|gb|EJR93046.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD169]
Length = 245
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 137/251 (54%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E + + E E ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNNNTIQGKIESVISEMVGKETE---IIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M+ AA++ VG HDF+AF N + + + V+ V+ DV+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|148263121|ref|YP_001229827.1| tRNA pseudouridine synthase A [Geobacter uraniireducens Rf4]
gi|189030134|sp|A5GB00.1|TRUA_GEOUR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|146396621|gb|ABQ25254.1| tRNA pseudouridine synthase A [Geobacter uraniireducens Rf4]
Length = 244
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 136/249 (54%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+I YDGT Y+GWQ Q + TIQ ++E +L + E ++L + RTD GVHA G V
Sbjct: 5 KLIIEYDGTNYSGWQVQPNGITIQQLIEASL---ATMLGEPVKLHSSGRTDAGVHALGMV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T L + LN LLP DI +R+ A F+ R AKSK Y Y IYN
Sbjct: 62 AAFKTG-KLLPLRAFSDGLNALLPNDIAIRDAVEAPLSFNPRADAKSKHYRYTIYNAVRR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P R ++H L+ M+ AA +FVG+HDF+AF N V+ +F V +
Sbjct: 121 SPLARLSSWHLRGALDIERMQAAASHFVGEHDFAAF--RASNCAAKTTVRRLFSVSVAKD 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G + ++V GSGFL VR + L ++G+ PD VP +L + DR A ++APP
Sbjct: 179 GESVIIDVHGSGFLKNMVRIIAGTLAEVGQGKKNPDAVPGLLVSGDR---AASGITAPPQ 235
Query: 292 GLCLVEVKY 300
GLCLVEV Y
Sbjct: 236 GLCLVEVFY 244
>gi|16801808|ref|NP_472076.1| tRNA pseudouridine synthase A [Listeria innocua Clip11262]
gi|422414125|ref|ZP_16491084.1| tRNA pseudouridine synthase A [Listeria innocua FSL S4-378]
gi|423101379|ref|ZP_17089083.1| tRNA pseudouridine synthase A [Listeria innocua ATCC 33091]
gi|24212565|sp|Q927P1.1|TRUA_LISIN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|16415283|emb|CAC97973.1| truA [Listeria innocua Clip11262]
gi|313616961|gb|EFR89587.1| tRNA pseudouridine synthase A [Listeria innocua FSL S4-378]
gi|370792165|gb|EHN60056.1| tRNA pseudouridine synthase A [Listeria innocua ATCC 33091]
Length = 248
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 143/253 (56%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG+ + G+Q Q + T+Q +EKAL ++ K + +R+ + RTDTGVHA G
Sbjct: 3 RYKAIISYDGSGFFGYQVQPNTRTVQAEIEKALEKMHK--GKSVRITASGRTDTGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + E AL + P DI + A +FHARF K Y Y I
Sbjct: 61 QVIHFDSELDITA-EKFQKALQVMTPFDISFLTVEEAPADFHARFGTVGKEYRYVIKRTK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ DPF R++A H Y+L+ M+QA+E +G+HDF++F + R +R + V++++ D
Sbjct: 120 IFDPFSRNFALHYPYELDIAKMKQASERLIGEHDFTSFCSA-RTER-DSKVRTLYSIDFY 177
Query: 230 EMGA-LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E A L + +G+GFLY VR + LL G+ I PD + K L DR++L + +A
Sbjct: 178 EEDAETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDITKALLAHDRQKLI--SKTA 235
Query: 289 PPHGLCLVEVKYN 301
PP GL L V Y
Sbjct: 236 PPQGLYLWRVDYE 248
>gi|229188692|ref|ZP_04315731.1| tRNA pseudouridine synthase A 2 [Bacillus cereus ATCC 10876]
gi|228594881|gb|EEK52661.1| tRNA pseudouridine synthase A 2 [Bacillus cereus ATCC 10876]
Length = 250
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 9 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMIGKEIEIIGCSRTDAGVHALN 65
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 66 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 124
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M+ AA++ VG HDF+AF N + + + V+ V+ DV+
Sbjct: 125 HTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVM 182
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 183 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQI---NCLAE 239
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 240 ASGLYLENVEF 250
>gi|160934132|ref|ZP_02081519.1| hypothetical protein CLOLEP_02995 [Clostridium leptum DSM 753]
gi|156866805|gb|EDO60177.1| tRNA pseudouridine synthase A [Clostridium leptum DSM 753]
Length = 251
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 101/251 (40%), Positives = 138/251 (54%), Gaps = 8/251 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L IAYDG Y GWQ Q + ++Q + + AL +V +D + G SRTD+GVHA Q
Sbjct: 8 LTIAYDGRAYHGWQIQENALSVQEVFQGALRQVIG---DDFDVKGCSRTDSGVHA-NQYC 63
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+ E + AALN LP D+ V+ + +FHAR+S K K Y Y I+ND V +
Sbjct: 64 ISLKTGHRIPCERLVAALNRFLPMDMAVKGCRSVSLDFHARYSCKGKEYQYLIWNDPVRN 123
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
PF A+H Y L+T ++ QAA+ FVGKHDF++F + +R N + V V G
Sbjct: 124 PFLDGRAFHYWYPLDTDMLNQAAQAFVGKHDFTSFCTLDHRER-DNMERMVKCCSVSREG 182
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+L+ VE GFLY VR MV LL+I + IP D +P IL +DR +K +A G
Sbjct: 183 SLVTFRVEADGFLYNMVRIMVGTLLRIAQGKIPEDGIPAILEAKDR---SKAGPTARACG 239
Query: 293 LCLVEVKYNEE 303
L L V Y E+
Sbjct: 240 LYLNRVFYEED 250
>gi|150392315|ref|YP_001322364.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF]
gi|149952177|gb|ABR50705.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF]
Length = 246
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 147/251 (58%), Gaps = 10/251 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
R+++ YDGT+Y GWQ QT+ TIQ +E ++++ + +VG+ RTD G HA+GQ
Sbjct: 5 RMIVEYDGTKYRGWQRQTATDMTIQGKLEHV---ISEMVGKKTEIVGSGRTDAGAHAYGQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T S ++ ++ +N LP DI V+E+ A P FH+R++ K K Y Y+I+N++
Sbjct: 62 VANFHTK-STLSIKEMYQYINQYLPQDIVVKELKEAGPRFHSRYNVKGKKYVYRIWNEST 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
F R ++YH LN LM++AA VG +DF F +V+++++ V+++ + +
Sbjct: 121 ASVFHRKHSYHVPQALNLELMQEAAAKLVGTYDFLPFSSVKKSEK--TTVRTIESITIEK 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
A +++ + G GFLY VR + L++IG + P + +I + R+ + + P
Sbjct: 179 KDAFVEITIVGDGFLYNMVRIITGTLIEIGSKKKKPTYIDEIFSVGKRQNAGE---TVPS 235
Query: 291 HGLCLVEVKYN 301
GL L+EV YN
Sbjct: 236 QGLFLIEVYYN 246
>gi|75761576|ref|ZP_00741532.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218895546|ref|YP_002443957.1| tRNA pseudouridine synthase A [Bacillus cereus G9842]
gi|228899172|ref|ZP_04063442.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis IBL 4222]
gi|228963570|ref|ZP_04124723.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
sotto str. T04001]
gi|402562483|ref|YP_006605207.1| tRNA pseudouridine synthase A [Bacillus thuringiensis HD-771]
gi|423363081|ref|ZP_17340580.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD022]
gi|423565238|ref|ZP_17541514.1| tRNA pseudouridine synthase A 2 [Bacillus cereus MSX-A1]
gi|434373539|ref|YP_006608183.1| tRNA pseudouridine synthase A [Bacillus thuringiensis HD-789]
gi|74490946|gb|EAO54206.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218543347|gb|ACK95741.1| tRNA pseudouridine synthase A [Bacillus cereus G9842]
gi|228796088|gb|EEM43543.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228860441|gb|EEN04831.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis IBL 4222]
gi|401076515|gb|EJP84869.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD022]
gi|401194455|gb|EJR01435.1| tRNA pseudouridine synthase A 2 [Bacillus cereus MSX-A1]
gi|401791135|gb|AFQ17174.1| tRNA pseudouridine synthase A [Bacillus thuringiensis HD-771]
gi|401872096|gb|AFQ24263.1| tRNA pseudouridine synthase A [Bacillus thuringiensis HD-789]
Length = 245
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMIGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M+ AA++ VG HDF+AF N + + + V+ V+ DV+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|196040200|ref|ZP_03107502.1| tRNA pseudouridine synthase A [Bacillus cereus NVH0597-99]
gi|196029055|gb|EDX67660.1| tRNA pseudouridine synthase A [Bacillus cereus NVH0597-99]
Length = 245
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 142/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMIGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQHLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +V+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYSLEVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P+IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|374339101|ref|YP_005095837.1| pseudouridylate synthase I [Marinitoga piezophila KA3]
gi|372100635|gb|AEX84539.1| pseudouridylate synthase I [Marinitoga piezophila KA3]
Length = 244
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 97/246 (39%), Positives = 139/246 (56%), Gaps = 10/246 (4%)
Query: 54 VIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAH 113
++AYDGT++ G+Q Q T+Q EK L R+ K + + GA RTDTGVH +GQV
Sbjct: 6 IVAYDGTKFNGFQGQPKVRTVQGEFEKVLKRIFK---QKVISWGAGRTDTGVHGYGQVIA 62
Query: 114 FITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDP 173
F P LE+I ALN LP DI VR++ +F R A +IYHY IY + +
Sbjct: 63 FDVPNERMTLENIKDALNANLPEDIYVRKVLKVRDKFSPRHEATKRIYHYFIYQNDEPNI 122
Query: 174 FQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM-G 232
F R + Y LN MR+AA+Y G+HDF+ F +DR NPV++++R +++M
Sbjct: 123 FLRDRVWWFPYDLNIEKMRKAAKYLEGEHDFTTF-KTGNDDR--NPVRTIYRIRILKMRN 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
++ + VEG FL R VRN+V L+++G E P+ + +IL + R +K SAPP G
Sbjct: 180 NIILIRVEGHSFLRRMVRNIVGALVKVGTENWEPEYIKEILEAKSR---SKAPASAPPQG 236
Query: 293 LCLVEV 298
L V
Sbjct: 237 LYFYSV 242
>gi|423387092|ref|ZP_17364346.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG1X1-2]
gi|423531511|ref|ZP_17507956.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuB1-1]
gi|401629986|gb|EJS47795.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG1X1-2]
gi|402443961|gb|EJV75853.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuB1-1]
Length = 245
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMIGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M+ AA++ VG HDF+AF N + + + V+ V+ DV+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|341820653|emb|CCC56946.1| tRNA pseudouridine synthase A [Weissella thailandensis fsh4-2]
Length = 249
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 145/255 (56%), Gaps = 12/255 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ IAYDGT + GWQ Q + T+Q +E + ++ K E +R+ G+ RTD VHA G
Sbjct: 3 RYKATIAYDGTDFFGWQVQPNKRTVQAEMELVVNKMAKNPAEHIRVQGSGRTDARVHAKG 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVAHF PF +++ L+ +LP DI ++++ +FHA+F+A K Y Y+
Sbjct: 63 QVAHFDLPFDIPA-DAVRKGLSTMLPYDIGIKKVEKVSDDFHAQFNAHDKTYFYRFSTSE 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV----NVQRNDRLLNPVKSVFR 225
+DPF+R+Y H +LN LM+QA +VG+HD+ +FV + R + K ++
Sbjct: 122 YIDPFKRNYTGHWHRRLNPELMQQAIGDYVGEHDWLSFVASGYQQKTTVRTVYSAKMWYK 181
Query: 226 FDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
+ E + E G+GFLY Q+R MV +LL+IG P D + ++ +DR++
Sbjct: 182 PEEEE----IWFEFSGNGFLYNQIRIMVGVLLEIGNGVRPVDDIKRLFEVKDRQQA---Q 234
Query: 286 LSAPPHGLCLVEVKY 300
+AP GL L++VKY
Sbjct: 235 FTAPAQGLYLMDVKY 249
>gi|42779623|ref|NP_976870.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10987]
gi|402553974|ref|YP_006595245.1| tRNA pseudouridine synthase A [Bacillus cereus FRI-35]
gi|51316696|sp|Q73E17.1|TRUA2_BACC1 RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 2; AltName: Full=tRNA-uridine
isomerase I 2
gi|42735539|gb|AAS39478.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10987]
gi|401795184|gb|AFQ09043.1| tRNA pseudouridine synthase A [Bacillus cereus FRI-35]
Length = 245
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 139/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E + + E E ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETE---IIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +V+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLEVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P+IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|330444180|ref|YP_004377166.1| tRNA pseudouridine synthase A [Chlamydophila pecorum E58]
gi|328807290|gb|AEB41463.1| tRNA pseudouridine synthase A [Chlamydophila pecorum E58]
Length = 267
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 144/251 (57%), Gaps = 12/251 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L++AY GT YAGWQ Q TIQ ++E + + + +V + RTD+GVHA+GQV
Sbjct: 6 LLLAYQGTAYAGWQRQPQHLTIQEVLETLFMPIL---HSRVPMVASGRTDSGVHAYGQVV 62
Query: 113 HFITP---FSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
HF P + D + + LN LP DI VR+I+ FHAR+ A +K YHY + +
Sbjct: 63 HFSLPDHPLTSDPCK-LKKLLNARLPKDIVVRDIALTDASFHARYCAIAKEYHYTLSKNI 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
P+QR+++Y +++ LM Q A+Y +G HDF++F N+ R + ++++++ +
Sbjct: 122 KPLPWQRNFSYSPPHRIRADLMHQGAQYLIGTHDFASFANLGR--EYTSTIRTLYKVAIE 179
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E L L +G+GFLY+ VRN+V LL I K A PP+ + +L ++R+ K SAP
Sbjct: 180 ETEHTLTLIFKGNGFLYKMVRNLVGALLDINKGAYPPEHILNMLKEKNRR---KGPPSAP 236
Query: 290 PHGLCLVEVKY 300
H L L V Y
Sbjct: 237 AHALSLHHVCY 247
>gi|300767857|ref|ZP_07077767.1| tRNA-pseudouridine synthase I [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|300494842|gb|EFK30000.1| tRNA-pseudouridine synthase I [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
Length = 273
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 149/261 (57%), Gaps = 12/261 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++V+AYDGT +AG+Q Q T++ +V KA+ ++ K E + + GA RTD GVHA+G
Sbjct: 15 RYKVVLAYDGTNFAGFQRQPHQRTVEQVVTKAVNKMAKDPVEPIVIYGAGRTDAGVHAFG 74
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
Q HF P+ + E + LN +LP D V+ +S +FHAR+ K Y Y+ Y +
Sbjct: 75 QTLHFDLPYEINP-EGVRRGLNSMLPMDTIVKAVSIVPNDFHARYDTVGKRYWYRAYQNE 133
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRND--RLLNPVKSVFR 225
+DPF+RHY H + + ++QA G+HDFS FV Q +D R + K+
Sbjct: 134 FVDPFKRHYTGHFKFAADIDRIQQAIGDLEGRHDFSTFVASGSQAHDHVREIYSAKAWAL 193
Query: 226 FDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
D E +Q E GSGFLY QVR MVA+L++IG+ D +P +LA +DR++
Sbjct: 194 PDERE----IQFEFCGSGFLYNQVRIMVAVLMEIGQGRRAVDCIPALLAAKDREQARG-- 247
Query: 286 LSAPPHGLCLVEVKYNEEHLR 306
+AP GL + +V Y + L+
Sbjct: 248 -TAPAAGLYMKKVYYEQNELQ 267
>gi|423393125|ref|ZP_17370351.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG1X1-3]
gi|401632158|gb|EJS49947.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG1X1-3]
Length = 245
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 141/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVQDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +V+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLEVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEGKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L +++
Sbjct: 235 ASGLYLENIEF 245
>gi|345862115|ref|ZP_08814350.1| tRNA pseudouridine synthase A [Desulfosporosinus sp. OT]
gi|344324730|gb|EGW36273.1| tRNA pseudouridine synthase A [Desulfosporosinus sp. OT]
Length = 245
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 146/253 (57%), Gaps = 16/253 (6%)
Query: 52 RLVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
++ IA+DG++Y GWQ Q TIQ +E L +K+ ED+++VG RTD+GVHA
Sbjct: 5 KMTIAFDGSKYKGWQRQKENDLTIQGKIEAVL---SKMTGEDIQIVGCGRTDSGVHAENY 61
Query: 111 VAHFITPFSYDGLESIHAALNGL---LPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
+A+F T ++ S + L+ L LP DI V+ I FHAR++ SK Y Y++
Sbjct: 62 IANFHTKSTF----STNRMLDYLYEYLPEDIGVKSIEDVAERFHARYNVISKTYVYRMNT 117
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
+ D F R YAYH KLN MR+A+E +G HDF ++ N + +D+ + ++++ +
Sbjct: 118 NKFRDVFNRKYAYHLAEKLNLVEMRKASEVLIGTHDFQSYTNSRNSDK--STIRTINYIN 175
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+IE L +EV G+GFL+ VR +V L+++GK + P V KIL D+K+ +
Sbjct: 176 IIEKEGHLAIEVNGNGFLWNMVRIIVGTLIEVGKGNLKPVDVEKIL---DKKKRWEAGPL 232
Query: 288 APPHGLCLVEVKY 300
A GL L +V+Y
Sbjct: 233 AQAKGLYLKDVQY 245
>gi|322418344|ref|YP_004197567.1| tRNA pseudouridine synthase A [Geobacter sp. M18]
gi|320124731|gb|ADW12291.1| tRNA pseudouridine synthase A [Geobacter sp. M18]
Length = 250
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 97/252 (38%), Positives = 138/252 (54%), Gaps = 9/252 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+I YDGT Y+GWQ Q + T+Q ++E AL R+ ER L G RTD GVHA G V
Sbjct: 5 KLIIEYDGTAYSGWQVQPNGVTVQAVMEDALSRMLG-ERTPLHASG--RTDAGVHARGMV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T + L + LN LLP DI VRE + FH RF A++K Y Y + D +
Sbjct: 62 ACFKTGKTMP-LRAFREGLNTLLPSDIAVREAAEVPLGFHPRFDAQAKHYRYTMLLDDLR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P RH A+ KL+ MR A FVG+HDF+AF N V+ ++ ++++
Sbjct: 121 SPLSRHTAWRIKGKLDLEAMRAACTVFVGEHDFAAFRGA--NCAAKTTVRRIYSMELVQE 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
LL L+++GSGFL VR + L+ +G+ + V ++L DR+ ++ PP
Sbjct: 179 DRLLHLDIKGSGFLKNMVRIITGTLVDVGQGRLGAADVARLLKGGDRQ---NAGMTVPPQ 235
Query: 292 GLCLVEVKYNEE 303
GLCL+ V Y E+
Sbjct: 236 GLCLMRVFYPEQ 247
>gi|229148825|ref|ZP_04277073.1| tRNA pseudouridine synthase A 2 [Bacillus cereus m1550]
gi|228634619|gb|EEK91200.1| tRNA pseudouridine synthase A 2 [Bacillus cereus m1550]
Length = 250
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 9 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 65
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 66 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 124
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M+ AA++ VG HDF+AF N + + + V+ V+ DV+
Sbjct: 125 HTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVM 182
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 183 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDVEAIPNILEEKQRNQI---NCLAE 239
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 240 ASGLYLENVEF 250
>gi|169347102|ref|ZP_02866044.1| tRNA pseudouridine synthase A [Clostridium perfringens C str.
JGS1495]
gi|169296785|gb|EDS78914.1| tRNA pseudouridine synthase A [Clostridium perfringens C str.
JGS1495]
Length = 244
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 141/250 (56%), Gaps = 11/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+I YDGT Y GWQ Q TIQ VE+A+ +VTK E++ ++G+SRTD+GVHA V
Sbjct: 5 KLIIEYDGTSYFGWQKQPIGNTIQQKVEEAIKKVTK---EEVEILGSSRTDSGVHAKAYV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F T + G ++ AALN LP DI + +FHAR+ K Y Y I N
Sbjct: 62 ANFKTNSNIPG-KNFKAALNSKLPKDIVIMNSEEVAEDFHARYMTTGKTYCYTILNREEP 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQR-NDRLLNPVKSVFRFDVIE 230
+R+ YH +L+ M++A +YF+GKHDF AF QR + V+++ +
Sbjct: 121 PALERNCVYHVKKQLDVESMKEACKYFLGKHDFKAF---QRPGGTVKTSVRTITDIHIET 177
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G +++ V GFLY VR +V LL++G+ P+ + +++ + DRK K + PP
Sbjct: 178 EGNKIKIYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRK---KAGICVPP 234
Query: 291 HGLCLVEVKY 300
GLCL +V Y
Sbjct: 235 TGLCLEKVFY 244
>gi|168181898|ref|ZP_02616562.1| tRNA pseudouridine synthase A [Clostridium botulinum Bf]
gi|237796908|ref|YP_002864460.1| tRNA pseudouridine synthase A [Clostridium botulinum Ba4 str. 657]
gi|182674803|gb|EDT86764.1| tRNA pseudouridine synthase A [Clostridium botulinum Bf]
gi|229262719|gb|ACQ53752.1| tRNA pseudouridine synthase A [Clostridium botulinum Ba4 str. 657]
Length = 246
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 136/251 (54%), Gaps = 11/251 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPP--TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+L + YDG Y GWQ Q + T+Q +EKA+ +TK E + ++G SRTD+GVHA G
Sbjct: 5 KLKLEYDGANYCGWQKQKNEKFITLQGTLEKAISNITK---EKIEVIGVSRTDSGVHAKG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
V +F T E++ +N LP DI V A EFH+RF +K K Y Y + N +
Sbjct: 62 YVCNFFTNTKIPP-ENLQKVINNNLPADIVVLSSEEASNEFHSRFCSKGKTYEYTVLNSS 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
R+Y + KLN M+ A+ YF+G HDFSAF + + V+++ +F++
Sbjct: 121 QPIAIGRNYIFQFKDKLNIDNMKMASRYFIGTHDFSAFKT--KGSSIKTSVRTISKFEIN 178
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G ++ + G GFLY VR +V L++IG P+ + ++ ++DR + K P
Sbjct: 179 KKGDFIKFIITGDGFLYNMVRIIVGTLIEIGLNKREPEYIKYVIKSKDRTKAGK---CVP 235
Query: 290 PHGLCLVEVKY 300
GLCL EV Y
Sbjct: 236 SSGLCLKEVFY 246
>gi|326790769|ref|YP_004308590.1| tRNA pseudouridine synthase A [Clostridium lentocellum DSM 5427]
gi|326541533|gb|ADZ83392.1| tRNA pseudouridine synthase A [Clostridium lentocellum DSM 5427]
Length = 246
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 141/253 (55%), Gaps = 11/253 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPP--TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHA 107
++L IAYDG++Y G+Q Q+ P TIQ +E L T+ ED++++ + RTD GVH+
Sbjct: 3 NYKLTIAYDGSKYNGFQKQSKHPEKTIQGRLENVL---TQCFEEDIQIIASGRTDAGVHS 59
Query: 108 WGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
GQV +F Y ++ L+ LP DI + E+S A P FHAR++ K Y Y I N
Sbjct: 60 KGQVCNFHAE-HYLEPTTVLNYLSNYLPQDIAILELSIASPRFHARYNVLRKCYTYTIDN 118
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
+PF YAYH L+ + M+ AA Y +G HDF AF +++ + + + +F D
Sbjct: 119 GLFANPFTLKYAYHLASPLDISRMQAAANYLLGTHDFKAFTSLKSKTK--STTRHLFNID 176
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ + G++++L EG+GFL VR + L+++G P+ + +L Q R E +
Sbjct: 177 ITQEGSMIKLTYEGNGFLQHMVRILTGTLIEVGLGERSPEEMLVLLNNQIRSEA---GFT 233
Query: 288 APPHGLCLVEVKY 300
AP HGLC+ V Y
Sbjct: 234 APAHGLCMQRVDY 246
>gi|228937724|ref|ZP_04100358.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228970604|ref|ZP_04131252.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228977183|ref|ZP_04137582.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis Bt407]
gi|228782492|gb|EEM30671.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis Bt407]
gi|228789070|gb|EEM37001.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228821932|gb|EEM67926.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 250
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 9 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMIGKEIEIIGCSRTDAGVHALN 65
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 66 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVYDRFHARYNSKAKTYLYKIWNEE 124
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M+ AA++ G HDF+AF N + + + V+ V+ DV+
Sbjct: 125 HTNPFMRKYSMHVNKKLNVESMKAAAKHLAGSHDFTAFSNAKSKKKSM--VREVYTLDVM 182
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P+IL + R ++ A
Sbjct: 183 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQI---NCLAE 239
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 240 ASGLYLENVEF 250
>gi|229077782|ref|ZP_04210409.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock4-2]
gi|228705510|gb|EEL57869.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock4-2]
Length = 245
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M+ AA++ +G HDF+AF N + + + V+ V+ DV+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKAAAKHLIGSHDFTAFSNAKSKKKSM--VREVYTLDVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|147676690|ref|YP_001210905.1| tRNA pseudouridine synthase A [Pelotomaculum thermopropionicum SI]
gi|146272787|dbj|BAF58536.1| pseudouridylate synthase [Pelotomaculum thermopropionicum SI]
Length = 273
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 107/276 (38%), Positives = 147/276 (53%), Gaps = 32/276 (11%)
Query: 38 VKPPTDDSFPGFKWRLVIAYDGTRYAGWQFQ--TSPPTIQCIVEKALIRVTKLEREDLRL 95
+KP + + K + IAYDGT Y G+Q Q T T+Q ++E+ R+++L E +R+
Sbjct: 18 IKPDPEAAMRNIK--VTIAYDGTNYYGFQEQRGTKFRTVQEVIEE---RLSRLAGEQIRV 72
Query: 96 VGASRTDTGVHAWGQVAHF------ITPFSYDGLESIHAALNGLLPPDIRVREISAAVPE 149
+GA RTD GVHA GQV +F I P E + ALN LLP DI E P
Sbjct: 73 IGAGRTDAGVHARGQVINFNPGNWPIPP------ERVAYALNSLLPRDIAALESVEVPPS 126
Query: 150 FHARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVN 209
FHARFSA +K Y Y IYN V PF R Y+YH +L+ M+ A +G+HDFSAF
Sbjct: 127 FHARFSAVAKTYRYTIYNARVHSPFLRLYSYHVPRRLDVEAMQAGAALLIGRHDFSAF-- 184
Query: 210 VQRNDRLLNPVKSVFRFD----VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIP 265
L PVKS R V G L+ ++++ GFLY R + L+++G IP
Sbjct: 185 ----RALGTPVKSTVRTMLEACVSREGDLVYIDLKADGFLYHMARMIAGTLIRVGLGKIP 240
Query: 266 PDIVPKILATQDRKELAKYALSAPPHGLCLVEVKYN 301
P V IL ++D + +AP GLCL +++Y
Sbjct: 241 PGEVAAILKSRDS---LRGGPTAPARGLCLEKIEYT 273
>gi|404482547|ref|ZP_11017774.1| tRNA pseudouridine synthase A [Clostridiales bacterium OBRC5-5]
gi|404344708|gb|EJZ71065.1| tRNA pseudouridine synthase A [Clostridiales bacterium OBRC5-5]
Length = 245
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 146/251 (58%), Gaps = 9/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ RL+++YDGT Y GWQ Q + TI+ ++ A ++KL E++ ++GASRTD+GVHA+G
Sbjct: 3 RIRLIVSYDGTNYCGWQKQPNGITIEEVLNNA---ISKLTGEEIEIIGASRTDSGVHAYG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
VA F T + A+N LP DIR++ +H R + K Y Y+I N
Sbjct: 60 NVAVFDTNARM-AADKFAFAINQRLPDDIRIQYSDEVEAGWHPRKNDCIKTYTYRILNRK 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ P +R YA+ + L+ MR+A+ YF+G HDF++F + + + +PV+++F +V+
Sbjct: 119 IDIPTERLYAHFCYFNLDVEKMREASGYFIGTHDFTSFCS--QKSQASSPVRTIFSLEVL 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ ++ + + G GFLY +R + L+++G PP + +I+ ++RK + + P
Sbjct: 177 QDEDMITVVIRGDGFLYNMIRIIAGTLIKVGMGVYPPSYITEIMKVKNRKLAGQ---TMP 233
Query: 290 PHGLCLVEVKY 300
GL LVE++Y
Sbjct: 234 AKGLTLVEIEY 244
>gi|427439365|ref|ZP_18924020.1| tRNA pseudouridine synthase A [Pediococcus lolii NGRI 0510Q]
gi|425788201|dbj|GAC44808.1| tRNA pseudouridine synthase A [Pediococcus lolii NGRI 0510Q]
Length = 242
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 148/248 (59%), Gaps = 8/248 (3%)
Query: 55 IAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHF 114
+AYDGT +AG+Q Q + T++ ++++A+ ++ K + ++ + G+ RTD GVHA+GQV HF
Sbjct: 1 MAYDGTNFAGFQAQPNQRTVEGVLKRAVNKIAKNPQPEIPIFGSGRTDAGVHAFGQVVHF 60
Query: 115 ITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPF 174
P +HA LN +LP D +V+++ +FHARF+ K Y Y++ +DPF
Sbjct: 61 DLPIEMTANNMLHA-LNSILPLDTQVKKVEIVDEDFHARFTTHGKRYQYRMALGEFVDPF 119
Query: 175 QRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGAL 234
+R+Y H + ++ L++QA + G HDFS+FV + N V++++ + A
Sbjct: 120 KRNYTGHWKFPISIELIQQAIKDLEGTHDFSSFVASGSTAK--NHVRTIYEAKAWKDEAQ 177
Query: 235 LQL--EVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
++ E G+GFLY VR MVA+L++IG + P D +P++LA +DR + +AP G
Sbjct: 178 NEIIFEFYGNGFLYNMVRIMVAVLVEIGSKRRPVDDIPRLLAVKDRNQARG---TAPASG 234
Query: 293 LCLVEVKY 300
L L EV Y
Sbjct: 235 LYLKEVDY 242
>gi|423590246|ref|ZP_17566310.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD045]
gi|401221068|gb|EJR27694.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD045]
Length = 245
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M+ AA++ VG HDF+AF N + + + V+ V+ DV+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDVEAIPNILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|172056172|ref|YP_001812632.1| tRNA pseudouridine synthase A [Exiguobacterium sibiricum 255-15]
gi|229470753|sp|B1YH83.1|TRUA_EXIS2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|171988693|gb|ACB59615.1| tRNA pseudouridine synthase A [Exiguobacterium sibiricum 255-15]
Length = 249
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 140/253 (55%), Gaps = 11/253 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I YDGT Y+G+Q Q + TIQ ++EK L R+ K ++++G+ RTD VHA G
Sbjct: 3 RFKCTIQYDGTDYSGYQVQPNGLTIQEVLEKTLGRMHK---HPVKVIGSGRTDARVHAQG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF T S S+ ALN LLP DIRVR+ +F AR+ K Y Y +
Sbjct: 60 QVIHFDTELSI-APASMVKALNTLLPDDIRVRDCKEVASDFEARYDVVGKEYRYFVRR-- 116
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ F+RH + Y L+ +R + VG HDFS+F + N V++++ ++I
Sbjct: 117 TENAFRRHQSVLIPYSLDVAQIRLGLAHLVGTHDFSSFCVAKTETD--NRVRTIYEAELI 174
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E G L +GSGFLY Q+R MV LL +G+ PD + ++L +DR ++AP
Sbjct: 175 EQGEELIFRFQGSGFLYNQIRIMVGTLLDVGRGRFAPDDIKRMLEAKDRNVA---GVTAP 231
Query: 290 PHGLCLVEVKYNE 302
PHGL L EV Y E
Sbjct: 232 PHGLYLWEVFYPE 244
>gi|384184501|ref|YP_005570397.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410672790|ref|YP_006925161.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis Bt407]
gi|452196796|ref|YP_007476877.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|326938210|gb|AEA14106.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
chinensis CT-43]
gi|409171919|gb|AFV16224.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis Bt407]
gi|452102189|gb|AGF99128.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 245
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMIGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVYDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M+ AA++ G HDF+AF N + + + V+ V+ DV+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVESMKAAAKHLAGSHDFTAFSNAKSKKKSM--VREVYTLDVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P+IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|408355518|ref|YP_006844049.1| tRNA pseudouridine synthase A [Amphibacillus xylanus NBRC 15112]
gi|407726289|dbj|BAM46287.1| tRNA pseudouridine synthase A [Amphibacillus xylanus NBRC 15112]
Length = 248
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 144/257 (56%), Gaps = 15/257 (5%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
++ +I+YDG+ Y+G+Q Q + TIQ ++E AL ++ K E +++ + RTD GVHA+
Sbjct: 1 MRYLAIISYDGSNYSGYQIQPNQLTIQAVIEAALTKMHK--GEPVKITASGRTDAGVHAY 58
Query: 109 GQVAHFITPFSYDGLES-IHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
GQV HF + D ES ALN LLP DI V ++ FHARF A K Y Y I N
Sbjct: 59 GQVIHFDSEL--DIPESNWKKALNSLLPGDIVVLDVKQVSENFHARFDAIKKTYIYTILN 116
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQ---RNDRLLNPVKSVF 224
A +PF+ +Y H +LN LM QA + +G+HDF+AF + D+ +++++
Sbjct: 117 SADANPFEINYCAHVKERLNVDLMNQALQDLIGEHDFTAFCAANSYVKGDK----IRTIY 172
Query: 225 RFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
+ + V G+GFLY VR +V L++IG P + +I+ ++DR + K
Sbjct: 173 HASCQRVNNKVVFSVTGNGFLYNMVRIIVGTLIEIGLGQRPATDIKRIIESKDRTQAGK- 231
Query: 285 ALSAPPHGLCLVEVKYN 301
+APP GL L V+Y+
Sbjct: 232 --TAPPQGLYLNAVEYD 246
>gi|302851591|ref|XP_002957319.1| tRNA pseudouridine synthase [Volvox carteri f. nagariensis]
gi|300257414|gb|EFJ41663.1| tRNA pseudouridine synthase [Volvox carteri f. nagariensis]
Length = 226
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/234 (39%), Positives = 122/234 (52%), Gaps = 20/234 (8%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+R++++YDGT Y GWQ Q S PT+Q +E AL V + ER L + A RTD GVHA
Sbjct: 3 LSYRMIVSYDGTAYCGWQLQPSAPTVQRFLEGALCTVLREERAVLGVRAAGRTDAGVHAR 62
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV F D + + LN +LP DIRV +S P+F SA K Y Y I N
Sbjct: 63 GQVVQFSCDKELD-VTKMPYKLNSVLPHDIRVLRMSRTAPDFSVTCSALGKCYRYSITNG 121
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVN---------VQRNDRLLNP 219
DP + YA H L+ MR AA G HDFS F N VQR R NP
Sbjct: 122 ETHDPLRHRYALHVRRHLDLAAMRSAAALLTGTHDFSQFSNIGEEGGSPDVQRRRRQRNP 181
Query: 220 VKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKIL 273
VK++ R DV VEG+GFLY+ VR++ +L+ +G+ + V ++L
Sbjct: 182 VKTLRRVDV----------VEGNGFLYKMVRHISGVLVAVGEGKLQTKAVGRML 225
>gi|225862468|ref|YP_002747846.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB102]
gi|225790549|gb|ACO30766.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB102]
Length = 245
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 141/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMIGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +V+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYSLEVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|242277723|ref|YP_002989852.1| tRNA pseudouridine synthase A [Desulfovibrio salexigens DSM 2638]
gi|259550311|sp|C6BW69.1|TRUA_DESAD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|242120617|gb|ACS78313.1| tRNA pseudouridine synthase A [Desulfovibrio salexigens DSM 2638]
Length = 271
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/254 (37%), Positives = 144/254 (56%), Gaps = 13/254 (5%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+IAYDGT + GWQ Q T+Q +EKA+ R+T +R+ G+ RTD+GVHA GQV
Sbjct: 5 KLIIAYDGTNFCGWQLQPKLRTVQGDLEKAITRITGTT---VRVHGSGRTDSGVHALGQV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIY-NDAV 170
AHF + ++ ALN LLP D+ + + PEFH+R+SA K Y Y ++ ++
Sbjct: 62 AHFDVDSCFASVK-WQRALNSLLPDDVTILDAQLVSPEFHSRYSAIRKTYTYTLWLENSF 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI- 229
P++RHY + L+ + Q +YF+G+HDFS+F N + + V+++ F
Sbjct: 121 FLPWRRHYVW-KCGPLDFCALDQGMQYFLGEHDFSSFQNT--GTEIKSTVRTIHEFKRYP 177
Query: 230 -EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ + LEV GSGFL + VRNMV L++IG+ P+ V +L +DR +A
Sbjct: 178 GQTEQEMILEVCGSGFLKQMVRNMVGCLVRIGRGKAEPETVRSLLQMKDR---TAAPATA 234
Query: 289 PPHGLCLVEVKYNE 302
P GLC+ V Y E
Sbjct: 235 PAQGLCMAGVYYGE 248
>gi|85859802|ref|YP_462004.1| tRNA pseudouridine synthase A [Syntrophus aciditrophicus SB]
gi|85722893|gb|ABC77836.1| tRNA pseudouridine synthase A [Syntrophus aciditrophicus SB]
Length = 259
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/250 (39%), Positives = 142/250 (56%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+LV+ YDGT Y GWQ Q + PTIQ I+E+++ R+T+ E + L G+ RTD GVHA QV
Sbjct: 19 KLVLEYDGTAYRGWQRQGNLPTIQKILEESIARITQ---EPVILHGSGRTDAGVHALNQV 75
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F T S ++ LN LLP DI +RE EFH+R+SAKSK Y Y+I N V
Sbjct: 76 ANFRTS-SRIPAANLLRGLNSLLPGDIVIRETEDVDEEFHSRYSAKSKSYLYRILNSPVR 134
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV-IE 230
P QR+ A+ L+ M A GKHDF++F + + + V+++ R ++ E
Sbjct: 135 SPLQRNSAWFIRCCLDLEKMAGAISLLCGKHDFTSFCAAGSD--VKSCVRTIIRAEIERE 192
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
++ + VE GFL VRN+V L++IG +I+ IL +DR ++APP
Sbjct: 193 TEQVITISVEADGFLRHMVRNIVGTLVEIGAGQDSSEIMRDILEAKDR---GCAGITAPP 249
Query: 291 HGLCLVEVKY 300
GL L +V Y
Sbjct: 250 QGLFLQKVSY 259
>gi|283796516|ref|ZP_06345669.1| tRNA pseudouridine synthase A [Clostridium sp. M62/1]
gi|291075930|gb|EFE13294.1| tRNA pseudouridine synthase A [Clostridium sp. M62/1]
gi|295092580|emb|CBK78687.1| pseudouridylate synthase I [Clostridium cf. saccharolyticum K10]
Length = 368
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 102/274 (37%), Positives = 153/274 (55%), Gaps = 17/274 (6%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ RL +AYDGT Y GWQ Q + TI+ ++ +AL ++L +E++++VGASRTD+GVHA G
Sbjct: 3 RIRLTVAYDGTNYCGWQLQPNGITIEEVLNRAL---SELLKEEIQVVGASRTDSGVHAMG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
+A F T S E I ALN LP D+RV++ FH R + K Y YKI N
Sbjct: 60 NIAVFDTE-SRIPPEKICFALNQRLPEDVRVQKSEEVPLTFHPRKANCVKTYEYKILNRK 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ P R Y + + L+ MR+AA + VG+HDF +F V+ V++++ +
Sbjct: 119 IDMPLNRLYCHFCYFDLDVEKMRRAAAFLVGEHDFKSFCTVRTQAE--ETVRTIYSL-TV 175
Query: 230 EMGA--LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ GA ++ + + GSGFLY VR + L++IG PP+ + +IL +DR A +
Sbjct: 176 DRGADDVIVIRISGSGFLYNMVRIITGTLVKIGMGVWPPEYMEEILEARDR---AAAGPT 232
Query: 288 APPHGLCLVEVKYNEEHLRLPAACPLSSFGRHHS 321
P GL LV ++Y +E PA C + RH S
Sbjct: 233 IPAKGLTLVSMEYEKE----PADC-VRGENRHWS 261
>gi|49476819|ref|YP_034755.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|62901429|sp|Q6HNW5.1|TRUA2_BACHK RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 2; AltName: Full=tRNA-uridine
isomerase I 2
gi|49328375|gb|AAT59021.1| tRNA pseudouridine synthase I (tRNA pseudouridine synthase A)
[Bacillus thuringiensis serovar konkukian str. 97-27]
Length = 245
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 138/251 (54%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E + + E E ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETE---IIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHNRFHARYNSKVKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +V+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYSLEVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P+IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|402300073|ref|ZP_10819622.1| tRNA pseudouridine synthase A [Bacillus alcalophilus ATCC 27647]
gi|401724764|gb|EJS98096.1| tRNA pseudouridine synthase A [Bacillus alcalophilus ATCC 27647]
Length = 241
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 138/247 (55%), Gaps = 10/247 (4%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG RY GWQ TIQ +E V+++ + ++G+ RTD GVHA
Sbjct: 4 YKLTIQYDGGRYKGWQRLGNGENTIQAKIEHV---VSEMAGVPIEIIGSGRTDAGVHALA 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
Q+A+F +++ LN LP DI V + +HARF K+Y YKI+N+A
Sbjct: 61 QIANFKMEKEMTE-QAVQTYLNKYLPQDIVVTNVEIVADRYHARFHTTEKMYLYKIWNEA 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H L+ M+ AA +F+G+HDF+AF N + N + V+ ++ F++
Sbjct: 120 YTNPFIRKYSTHIEEPLDLEKMKMAASFFIGEHDFTAFSNAKSNKK--TKVREIYSFEIT 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ L+++ + G+GFLY VR +V L+++G I + +P I+ ++R + + A +A
Sbjct: 178 KENGLIEVRISGNGFLYNMVRKIVGTLIEVGLGRIEAEDIPAIIEKKERNQTGRMAEAA- 236
Query: 290 PHGLCLV 296
GL LV
Sbjct: 237 --GLFLV 241
>gi|239618279|ref|YP_002941601.1| tRNA pseudouridine synthase ACD [Kosmotoga olearia TBF 19.5.1]
gi|259550401|sp|C5CGS8.1|TRUA_KOSOT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|239507110|gb|ACR80597.1| tRNA pseudouridine synthase A [Kosmotoga olearia TBF 19.5.1]
Length = 250
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 144/250 (57%), Gaps = 10/250 (4%)
Query: 54 VIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAH 113
V+ YDG+ + G+Q Q + T+Q + E+AL R+ K + + GA RTDTGVHA+GQV
Sbjct: 7 VVVYDGSNFFGYQIQPNKRTVQGVFEEALERIHKAK---IPTDGAGRTDTGVHAYGQVIA 63
Query: 114 FITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDP 173
F + + + ALN LP DI VR I F RF+AK +IYHY I N D
Sbjct: 64 FTSNLDRLTPKHMKDALNANLPDDIYVRRIHEVPSNFSPRFAAKKRIYHYYILNTKEPDL 123
Query: 174 FQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGA 233
F+R Y + Y+++ MRQA+ Y +G+HDF++F +DR + ++++ ++ +
Sbjct: 124 FRRKYFWWFPYEVDLNRMRQASRYLIGEHDFTSF-RTGHDDR--STIRTITGIRILRLQK 180
Query: 234 -LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
++ + VEG FL R VRN+V LL+++G I P +IL +DR +L SAP HG
Sbjct: 181 NIILIRVEGISFLRRMVRNIVGLLMRVGTGGIEPKKTKEILEARDRSKLPS---SAPAHG 237
Query: 293 LCLVEVKYNE 302
L L +V ++E
Sbjct: 238 LVLHKVIFDE 247
>gi|336233687|ref|YP_004586303.1| tRNA pseudouridine synthase A [Geobacillus thermoglucosidasius
C56-YS93]
gi|335360542|gb|AEH46222.1| tRNA pseudouridine synthase A [Geobacillus thermoglucosidasius
C56-YS93]
Length = 248
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 142/250 (56%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ ++YDGT + G+Q Q T+Q +E+AL ++ K + +R+ + RTD GVHA+GQV
Sbjct: 6 KCTLSYDGTHFFGYQIQPGKRTVQGELEQALEQIHK--GKAIRVTASGRTDAGVHAYGQV 63
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF T S E ALN LLP DI +++ A P FHARFSA +K Y YK+
Sbjct: 64 IHFDTFLSLSP-EQWKKALNALLPDDIVIKDAQEAAPSFHARFSATAKEYRYKVRIAQER 122
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F RHY YH Y L+ M +A G HDF++F + + + + + V+++++ D+
Sbjct: 123 DVFLRHYCYHYPYPLDMEAMGRALRLIEGTHDFTSFCSAKTD--VDDRVRTIYKADMTVR 180
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
LL+ G+GFLY VR +V +L++G+ D + LA +DR+ K +APP
Sbjct: 181 DDLLEFCFIGNGFLYNMVRIIVGTILEVGQGKRSVDSISSALAAKDRRFAGK---TAPPQ 237
Query: 292 GLCLVEVKYN 301
GL L +V Y+
Sbjct: 238 GLYLWKVYYD 247
>gi|164688053|ref|ZP_02212081.1| hypothetical protein CLOBAR_01698 [Clostridium bartlettii DSM
16795]
gi|164602466|gb|EDQ95931.1| tRNA pseudouridine synthase A [Clostridium bartlettii DSM 16795]
Length = 245
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 143/252 (56%), Gaps = 14/252 (5%)
Query: 52 RLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
++V+ YDG+ + G+Q + + TIQ +E L +++ E++ ++G+ RTD GVHA+GQ
Sbjct: 5 KMVVEYDGSNFKGFQKLKDNENTIQGKLESVL---SQMADENIEIIGSGRTDMGVHAYGQ 61
Query: 111 VAHFIT--PFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
V +F T P S L +H L LP I +REI FH+R++AK K+Y YKI N+
Sbjct: 62 VVNFKTNSPLS---LNKMHKYLYEYLPQSIAIREIEEVDDRFHSRYNAKRKVYLYKIDNN 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
+PF R Y H K++ MR A+ VG+HDF++F + + + + V+ ++ +
Sbjct: 119 EYPNPFNRKYTCHVPKKIDLDKMRAVADVLVGEHDFTSFCSSRSKKK--SHVREIYSISI 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E L+++ VEG+GFLY VR + L+ G I P+ V +L +DR +K +A
Sbjct: 177 NENNGLIEIYVEGNGFLYNMVRIIAGTLIDAGHNKITPEEVKNLLELKDR---SKSPETA 233
Query: 289 PPHGLCLVEVKY 300
P GL L VKY
Sbjct: 234 PSKGLFLYRVKY 245
>gi|373471181|ref|ZP_09562252.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium oral taxon
082 str. F0431]
gi|371761011|gb|EHO49663.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium oral taxon
082 str. F0431]
Length = 245
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 146/251 (58%), Gaps = 9/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ RL+++YDGT Y GWQ Q + TI+ ++ A ++KL E++ ++GASRTD+GVHA+G
Sbjct: 3 RIRLIVSYDGTNYCGWQKQPNGITIEEVLNNA---ISKLTGEEIEIIGASRTDSGVHAYG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
VA F T + A+N LP DIR++ +H R + K Y Y+I N
Sbjct: 60 NVAVFDTNARM-AADKFAFAINQRLPDDIRIQYSDEVEAGWHPRKNDCIKTYTYRILNRK 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ P +R YA+ + L+ MR+A+ YF+G HDF++F + + + +PV+++F +V+
Sbjct: 119 IDIPTERLYAHFCYFNLDVDKMREASGYFIGTHDFTSFCS--QKSQASSPVRTIFSLEVL 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ ++ + + G GFLY +R + L+++G PP + +I+ ++RK + + P
Sbjct: 177 QDEDMITIVIRGDGFLYNMIRIIAGTLIKVGMGVYPPSHITEIMKAKNRKLAGQ---TMP 233
Query: 290 PHGLCLVEVKY 300
GL LVE++Y
Sbjct: 234 AKGLTLVEIEY 244
>gi|253579808|ref|ZP_04857076.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848807|gb|EES76769.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 246
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/248 (37%), Positives = 137/248 (55%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
LV+AYDGT Y GWQ Q + T+Q ++ L ++L E + +GASRTD GVHA G VA
Sbjct: 6 LVVAYDGTNYCGWQTQPNGITVQGVLNDTL---SELLGEKIETIGASRTDAGVHAMGNVA 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
F T G E I ALN LP DIR++ P+FH R+ K Y Y+I N
Sbjct: 63 VFDTNTRIPG-EKISYALNQRLPEDIRIQLSEEVEPDFHPRYCDSEKTYEYRILNRKFPV 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P +R Y Y YKL+ M+ A Y +G+HDF++F + ++ +++V DV G
Sbjct: 122 PTERLYTYFYHYKLDVDKMKAATSYLIGQHDFASFCGAKA--QVKTTIRTVTGIDVWRDG 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
++ + V G+GFLY VR + L+++G PP+ V IL +R E+A +AP G
Sbjct: 180 DIVTIRVTGTGFLYNMVRIISGTLIEVGNGQYPPERVKTILEACNR-EMA--GPTAPAQG 236
Query: 293 LCLVEVKY 300
L L+ +++
Sbjct: 237 LTLMGIEF 244
>gi|403071277|ref|ZP_10912609.1| tRNA pseudouridine synthase A [Oceanobacillus sp. Ndiop]
Length = 249
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 144/249 (57%), Gaps = 7/249 (2%)
Query: 55 IAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHF 114
I YDG+ ++G+Q Q T+Q ++E L + K ++RL + RTDTGVHA GQV HF
Sbjct: 8 IKYDGSEFSGFQVQPQNRTVQGVLESVLKEMHK--GAEIRLQASGRTDTGVHAIGQVIHF 65
Query: 115 ITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPF 174
+PF ++ ALN LLP DI ++E++ EFHAR+S K K YHY ++N D F
Sbjct: 66 DSPFDIPE-KNWKRALNTLLPDDIYIQEVTKVSDEFHARYSVKEKEYHYYVWNAEEPDIF 124
Query: 175 QRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGAL 234
+R+Y+++ Y+L+ M +A Y G HDF+ F + + + ++++F + G
Sbjct: 125 KRNYSFYFPYQLDIDKMLEACRYLEGTHDFTTFSSAKSTIK-GEKIRTLFHASCKKQGNE 183
Query: 235 LQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLC 294
++ GSGFLY VR MV++LL +G+ P + +LA +DR +LA +S P GL
Sbjct: 184 VEFIFRGSGFLYNMVRIMVSVLLDVGQGRRKPTDIIDLLAKKDR-QLAGKTIS--PQGLY 240
Query: 295 LVEVKYNEE 303
L VKY +
Sbjct: 241 LWNVKYEAD 249
>gi|422347433|ref|ZP_16428345.1| tRNA pseudouridine synthase A 2 [Clostridium perfringens WAL-14572]
gi|422875317|ref|ZP_16921802.1| tRNA pseudouridine synthase A [Clostridium perfringens F262]
gi|373224731|gb|EHP47068.1| tRNA pseudouridine synthase A 2 [Clostridium perfringens WAL-14572]
gi|380303847|gb|EIA16143.1| tRNA pseudouridine synthase A [Clostridium perfringens F262]
Length = 244
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 140/250 (56%), Gaps = 11/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L I YDGT Y GWQ Q TIQ VE+A+ +VTK E++ ++G+SRTD+GVHA V
Sbjct: 5 KLTIEYDGTSYFGWQKQPIGNTIQQKVEEAIKKVTK---EEVEILGSSRTDSGVHAKAYV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F T + G ++ AALN LP DI + +FHAR+ K Y Y I N
Sbjct: 62 ANFKTNSNIPG-KNFKAALNSKLPKDIVIMNSEEVAEDFHARYMTTGKTYCYTILNREEP 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQR-NDRLLNPVKSVFRFDVIE 230
+R+Y YH +L+ M++A +YF+GKHDF AF QR + V+++ +
Sbjct: 121 PALERNYVYHVKKQLDVESMKEACKYFLGKHDFKAF---QRPGGTVKTSVRTITDIHIET 177
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G +++ V GFLY VR +V LL++G+ + + +++ + DRK K + PP
Sbjct: 178 EGNKIKIYVSADGFLYNMVRLIVGTLLKVGRGKEKAEYIKEVIDSGDRK---KAGICVPP 234
Query: 291 HGLCLVEVKY 300
GLCL +V Y
Sbjct: 235 TGLCLEKVFY 244
>gi|150392126|ref|YP_001322175.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF]
gi|149951988|gb|ABR50516.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF]
Length = 255
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/246 (39%), Positives = 137/246 (55%), Gaps = 9/246 (3%)
Query: 55 IAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHF 114
I YDGT Y+GWQ Q + P+IQ + KAL +VT E++ G+ RTD GVHA GQVA F
Sbjct: 8 IEYDGTNYSGWQIQQNAPSIQEEIAKALKKVTG---EEITTHGSGRTDAGVHAQGQVASF 64
Query: 115 ITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPF 174
S E I ALNG LP DI + E +FHAR+SA K Y Y I N+
Sbjct: 65 -QLHSKIPAERISFALNGKLPRDITILEAKEMPEDFHARYSAIGKRYGYCIMNNTHGSAL 123
Query: 175 QRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGAL 234
R+Y YH YKL+ M+QA+E +G HDF F + ++ + V+ + + G+
Sbjct: 124 LRNYCYHVPYKLDLQKMKQASETLLGTHDFKGF--MASGSQVKSTVRRIDEINFDTQGSQ 181
Query: 235 LQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLC 294
+ + ++G+GFLY+ VR +V L+ IG I + + IL TQ+R+ K +AP GL
Sbjct: 182 IWITMQGNGFLYKMVRIIVGSLVGIGTGKIKEEALQNILETQNRRVAVK---TAPAQGLY 238
Query: 295 LVEVKY 300
L +V Y
Sbjct: 239 LQKVFY 244
>gi|407708451|ref|YP_006832036.1| Enzyme [Bacillus thuringiensis MC28]
gi|407386136|gb|AFU16637.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis MC28]
Length = 245
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG RY GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARYKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFKSDEKLVE-HKVKKYLNQYLPNDISITNVEEVPDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R ++ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +V
Sbjct: 120 HTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSHDFTAFSNAKSKKKSM--VREVYMLEVS 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + D +P IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDADAIPNILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLESVEF 245
>gi|89893262|ref|YP_516749.1| hypothetical protein DSY0516 [Desulfitobacterium hafniense Y51]
gi|89332710|dbj|BAE82305.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 271
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/253 (41%), Positives = 136/253 (53%), Gaps = 11/253 (4%)
Query: 53 LVIAYDGTRYAGWQFQTS--PPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
L +AYDGT Y G+Q Q PTIQ +E KL E++ L A RTDTGVHA GQ
Sbjct: 9 LKVAYDGTYYHGFQRQPEFHGPTIQGTLEAVW---AKLVEEEVTLNTAGRTDTGVHAAGQ 65
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
V +F T ++ I A N LLP DIR+ A FHARFSAK K Y Y+I N V
Sbjct: 66 VVNFRTGARIP-VDKIPKAFNSLLPRDIRILAAQEAAENFHARFSAKWKRYDYRIDNHPV 124
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
D F R Y+ H +L+ M+Q A+Y VG+H+F AF + ++++ V E
Sbjct: 125 ADVFTRLYSLHEPVRLDWQRMQQGAQYLVGRHNFKAFSAAGGTSKTFE--RTLYLCQVAE 182
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
L++ G GFLY VR + L+ +GK I P +P ILA+ DRK + ++A P
Sbjct: 183 NQGHLRITCIGDGFLYNMVRIIAGTLVYVGKNRIQPGEIPDILASLDRK---RGGVTATP 239
Query: 291 HGLCLVEVKYNEE 303
GL L V Y EE
Sbjct: 240 QGLTLSYVHYGEE 252
>gi|423434091|ref|ZP_17411072.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG4X12-1]
gi|401127360|gb|EJQ35086.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG4X12-1]
Length = 245
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 139/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M AA++ VG HDF+AF N + + + V+ V+ DV+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMTAAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|219666536|ref|YP_002456971.1| tRNA pseudouridine synthase A [Desulfitobacterium hafniense DCB-2]
gi|219536796|gb|ACL18535.1| tRNA pseudouridine synthase A [Desulfitobacterium hafniense DCB-2]
Length = 271
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/253 (41%), Positives = 136/253 (53%), Gaps = 11/253 (4%)
Query: 53 LVIAYDGTRYAGWQFQTS--PPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
L +AYDGT Y G+Q Q PTIQ +E KL E + L A RTDTGVHA GQ
Sbjct: 9 LKVAYDGTYYHGFQRQPEFHGPTIQGTLETVW---AKLVEEQVTLNTAGRTDTGVHAAGQ 65
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
V +F T ++ I A N LLP DIR+ A +FHARFSAK K Y Y+I N V
Sbjct: 66 VVNFRTGARIP-VDKIPKAFNSLLPRDIRILAAQEAAEDFHARFSAKWKRYDYRIDNHPV 124
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
D F R Y+ H +L+ M+Q A+Y VG+H+F AF + ++++ V E
Sbjct: 125 ADVFTRLYSLHEPVRLDWQRMQQGAQYLVGRHNFKAFSAAGGTSKTFE--RTLYLCQVAE 182
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
L++ G GFLY VR + L+ +GK I P +P ILA+ DRK + ++A P
Sbjct: 183 NQGHLRITCIGDGFLYNMVRIIAGTLVYVGKNRIQPGEIPDILASLDRK---RGGVTATP 239
Query: 291 HGLCLVEVKYNEE 303
GL L V Y EE
Sbjct: 240 QGLTLSYVHYGEE 252
>gi|366089434|ref|ZP_09455907.1| tRNA pseudouridine synthase A [Lactobacillus acidipiscis KCTC
13900]
Length = 290
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 151/260 (58%), Gaps = 9/260 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ IAYDGTR+AG+Q Q T+Q ++E+AL +++K + E + + G+ RTD+GVHA G
Sbjct: 4 RYKITIAYDGTRFAGFQSQPKQRTVQSVLEQALNKMSKFD-EYITIFGSGRTDSGVHALG 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVAHF P +++ LN +LP DI + + FHAR+ A +K Y Y++
Sbjct: 63 QVAHFDFPHDMPA-DAMLRGLNSMLPLDIEIVDCQIVPQTFHARYEAHAKRYMYRVSRSW 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+DPF+R Y H Y L+ ++QA VG HDFS+F V + + V++++ V
Sbjct: 122 FIDPFKRFYTGHYKYPLDIERIKQAMGDVVGTHDFSSF--VASGSQTKSHVRTIYEATVR 179
Query: 230 EMGALLQLEVE--GSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E A ++ E G+GFLY QVR MVA LL+IG + P ++ +DR + + +
Sbjct: 180 EDQANNEVIFEFCGNGFLYNQVRIMVATLLEIGNKRRPVHDFLRLYEVKDRNQARE---T 236
Query: 288 APPHGLCLVEVKYNEEHLRL 307
AP GL L EV Y ++ +L
Sbjct: 237 APASGLYLKEVYYGQQAQQL 256
>gi|153816265|ref|ZP_01968933.1| hypothetical protein RUMTOR_02514 [Ruminococcus torques ATCC 27756]
gi|317501758|ref|ZP_07959944.1| pseudouridylate synthase [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088721|ref|ZP_08337631.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 3_1_46FAA]
gi|336439604|ref|ZP_08619215.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 1_1_57FAA]
gi|145846448|gb|EDK23366.1| tRNA pseudouridine synthase A [Ruminococcus torques ATCC 27756]
gi|316896791|gb|EFV18876.1| pseudouridylate synthase [Lachnospiraceae bacterium 8_1_57FAA]
gi|330407244|gb|EGG86747.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 3_1_46FAA]
gi|336015833|gb|EGN45635.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 1_1_57FAA]
Length = 271
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/250 (36%), Positives = 142/250 (56%), Gaps = 9/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L +AYDGT Y GWQ Q + T++ ++ KAL +TK E ++++GASRTD GVHA G V
Sbjct: 5 KLTVAYDGTDYCGWQIQPNGITVEEVLNKALSDLTK---ETVKVIGASRTDAGVHARGNV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T S E I A+N LLP DI V ++H R+ K Y Y I N +
Sbjct: 62 AVFDTK-SPIPPERIAYAVNALLPDDIVVVRSEEVGCDWHPRYQNSIKTYEYTIVNREMP 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
DP +R ++ + L+ M++AA YF+G+HDF F +V + V+ + DV +
Sbjct: 121 DPLRRRDSWFVSFPLDIDDMKKAARYFIGEHDFKTFCSVHTG--VKTTVRRIDSLDVEKK 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G +++ + G+GFLY VR + L+++G+ A P V ++L ++KE + +APP
Sbjct: 179 GERIKIRISGNGFLYNMVRIIAGTLVEVGRGAFAPSEVKEML---EQKERGRAGATAPPQ 235
Query: 292 GLCLVEVKYN 301
GL L+ + Y+
Sbjct: 236 GLVLLGIVYD 245
>gi|226708659|sp|B8CPW5.1|TRUA_SHEPW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|212557374|gb|ACJ29828.1| tRNA pseudouridine synthase [Shewanella piezotolerans WP3]
Length = 261
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/256 (39%), Positives = 143/256 (55%), Gaps = 10/256 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I YDG+RY GWQ Q ++Q +EKAL +K+ E + + A RTDTGVH GQV
Sbjct: 5 LGIEYDGSRYYGWQRQLDVDSVQGQLEKAL---SKVANEPITVQCAGRTDTGVHGTGQVV 61
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
HF T + + +N LP DI VR + EFHARFSA ++ Y Y IYN +
Sbjct: 62 HFDTN-AIRKETAWTLGVNVNLPDDIAVRWVKVVDEEFHARFSATARRYRYMIYNHQLRP 120
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
R H ++ M QAA+ FVG+HDF++F +Q + P + + +V G
Sbjct: 121 GILRSGVSHYRGNIDEDKMHQAAQLFVGEHDFTSFRALQCQSK--TPFREIHEVNVTRQG 178
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ ++++ + FL+ VRN+V LL+IGK P + V +LA +DR +K A +A P+G
Sbjct: 179 MYICVDIKANAFLHHMVRNIVGTLLEIGKGNQPKEWVNTLLALKDR---SKAAATAQPNG 235
Query: 293 LCLVEVKYNEEHLRLP 308
L LV+V Y EH +LP
Sbjct: 236 LYLVDVTY-PEHFQLP 250
>gi|423073078|ref|ZP_17061821.1| tRNA pseudouridine synthase A [Desulfitobacterium hafniense DP7]
gi|361855908|gb|EHL07842.1| tRNA pseudouridine synthase A [Desulfitobacterium hafniense DP7]
Length = 271
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/253 (41%), Positives = 135/253 (53%), Gaps = 11/253 (4%)
Query: 53 LVIAYDGTRYAGWQFQTS--PPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
L +AYDGT Y G+Q Q PTIQ +E KL E++ L A RTDTGVHA GQ
Sbjct: 9 LKVAYDGTHYHGFQRQPEFHGPTIQGTLEAVW---AKLVEEEVTLNTAGRTDTGVHAAGQ 65
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
V +F T + I A N LLP DIR+ A FHARFSAK K Y Y+I N V
Sbjct: 66 VVNFRTGARIP-VAKIPKAFNSLLPRDIRILAAQEAAENFHARFSAKWKRYDYRIDNHPV 124
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
D F R Y+ H +L+ M+Q A+Y VG+H+F AF + ++++ V E
Sbjct: 125 ADVFTRLYSLHEPVRLDWQRMQQGAQYLVGRHNFKAFSAAGGTSKTFE--RTLYLCQVAE 182
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
L++ G GFLY VR + L+ +GK I P +P ILA+ DRK + ++A P
Sbjct: 183 NQGHLRITCIGDGFLYNMVRIIAGTLVYVGKNRIQPGEIPDILASLDRK---RGGVTATP 239
Query: 291 HGLCLVEVKYNEE 303
GL L V Y EE
Sbjct: 240 QGLTLSYVHYGEE 252
>gi|421276692|ref|ZP_15727513.1| tRNA pseudouridine synthase A [Streptococcus mitis SPAR10]
gi|395876898|gb|EJG87970.1| tRNA pseudouridine synthase A [Streptococcus mitis SPAR10]
Length = 249
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/255 (37%), Positives = 140/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ VI+YDG +AG+Q Q ++Q +EK L ++ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAVISYDGYAFAGFQRQPHARSVQEEIEKTLTKLNK--GQAITIHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIEIVADAFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M++A + G HDF+ F D++ K+ R D
Sbjct: 120 PKNPMRRHYATHYPYPLDVERMQKAVKKLEGTHDFTGFTAAGTSVEDKVRTITKASLRID 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPIEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|358066723|ref|ZP_09153213.1| tRNA pseudouridine synthase A [Johnsonella ignava ATCC 51276]
gi|356694994|gb|EHI56645.1| tRNA pseudouridine synthase A [Johnsonella ignava ATCC 51276]
Length = 249
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 144/249 (57%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+++YDGT Y GWQ Q + TI+ ++ KA + L E++ ++GASRTD+GVHA+G V
Sbjct: 8 KLIVSYDGTNYCGWQKQPNGVTIEEVLNKA---ASSLCGEEIEVIGASRTDSGVHAFGNV 64
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T D ALN LP DIR++E ++H R K Y Y+I N +
Sbjct: 65 AVFDTDMKMDA-GKFAFALNQRLPDDIRIQESYEVEKKWHPRKCDCIKTYIYRILNRKIN 123
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P +R YA+ ++L+ M +AA YF+G HDF++F + + + +PV+++ +V++
Sbjct: 124 IPTERLYAHFCYFRLDIDKMNEAAGYFIGTHDFTSFCS--QKTQAQSPVRTIHLLEVLKD 181
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
++ + + G GFLY +R + L+++G PP + +I A ++R+ + + P
Sbjct: 182 DDMITIAISGDGFLYNMIRIIAGTLIKVGMGVYPPSYIKEIFAAKNRRLAGQ---TMPAK 238
Query: 292 GLCLVEVKY 300
GL LVE++Y
Sbjct: 239 GLTLVEIEY 247
>gi|229101230|ref|ZP_04231994.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-28]
gi|228682198|gb|EEL36311.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-28]
Length = 245
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG RY GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARYKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFKSDEKLVE-HKVKKYLNQYLPNDISITNVEEVPDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R ++ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +V
Sbjct: 120 HTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSHDFTAFSNAKSKKKSM--VREVYMLEVS 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + D +P IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDADAIPNILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L +++
Sbjct: 235 ASGLYLESIEF 245
>gi|398813206|ref|ZP_10571908.1| pseudouridylate synthase I [Brevibacillus sp. BC25]
gi|398039367|gb|EJL32505.1| pseudouridylate synthase I [Brevibacillus sp. BC25]
Length = 244
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 143/251 (56%), Gaps = 9/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ R V+AYDGT ++G+Q Q T+Q +E AL RVT ED+++ G+ RTD GVHA G
Sbjct: 3 RLRCVLAYDGTDFSGFQVQPDQVTVQGEIEAALNRVTG---EDIQVFGSGRTDAGVHARG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF T S ++ LN LP I +R + FHARF + K Y Y I N+
Sbjct: 60 QVIHFDTS-SNIPMDKWRFVLNNQLPDSIVIRTVEEVDASFHARFDVQVKEYRYCIDNNP 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
V D F+ YA H + L+ M+QAA Y VG+HDF++F + + + + V++V+ V
Sbjct: 119 VADVFRHRYADHIRFPLDVDAMQQAAHYLVGEHDFTSFCSAKT--FVEDKVRTVYGLTVE 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G + + G+GFLY VR +V L+++G+ P + +ILA DR++ K +AP
Sbjct: 177 KNGDEVWVTCRGNGFLYNMVRIIVGTLVEVGQGKRNPAELREILAACDREKAGK---TAP 233
Query: 290 PHGLCLVEVKY 300
GL + EV Y
Sbjct: 234 AKGLTMWEVVY 244
>gi|260438183|ref|ZP_05791999.1| tRNA pseudouridine synthase A [Butyrivibrio crossotus DSM 2876]
gi|292809373|gb|EFF68578.1| tRNA pseudouridine synthase A [Butyrivibrio crossotus DSM 2876]
Length = 250
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 141/250 (56%), Gaps = 9/250 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L +AYDGT Y+GWQ Q + T++ ++ KA L +D+ ++GASRTD GVH++G VA
Sbjct: 5 LRVAYDGTGYSGWQKQPNAITVEEVLCKA---CKNLFAQDIDIIGASRTDAGVHSYGNVA 61
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
F E I ALN LP DIRV E FH R K Y YKI+ND +
Sbjct: 62 VFDVDTRIPA-EKISYALNSRLPEDIRVVESRQVSENFHPRHVECRKTYEYKIWNDKFEN 120
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P R+Y++ L+ M +A YF+G HDF++F +V ++ + ++ ++ V +
Sbjct: 121 PLVRYYSHFFYGNLDIGKMNEACRYFIGLHDFTSFCSV--GSQVQSKIREIYSISVEKNN 178
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
L+ + V G+GFLY VR + L+++G+ + P +PKI+ ++R ELA +AP G
Sbjct: 179 RLITIRVTGNGFLYNMVRIIAGTLIKVGQGQLEPAEIPKIIDGKNR-ELA--GPTAPARG 235
Query: 293 LCLVEVKYNE 302
L LVE+ Y +
Sbjct: 236 LALVEINYEK 245
>gi|374295486|ref|YP_005045677.1| pseudouridylate synthase I [Clostridium clariflavum DSM 19732]
gi|359824980|gb|AEV67753.1| pseudouridylate synthase I [Clostridium clariflavum DSM 19732]
Length = 245
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 142/250 (56%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L+I YDGT+Y GWQ S TIQ +E L +K+ E + L+G+ RTD GVHA+ Q
Sbjct: 5 KLIIQYDGTKYRGWQKLGDSDKTIQGKLEDVL---SKMTNEKIELIGSGRTDAGVHAFKQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T S E + L LP DI V E+ FH+R+ K K Y Y+I+N
Sbjct: 62 VANFHTE-SKMSEEDMLDYLYRYLPQDIVVTEVVEVDERFHSRYHVKGKKYLYRIWNAKR 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
+PF R Y H L+ LMR+AAEY VG+HDFS+F +++ ++ + V+ +F ++
Sbjct: 121 HNPFLRKYCTHVPEPLDIDLMRKAAEYLVGEHDFSSFTSLKSKNK--SKVREIFSIEIKN 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
L+++ G GFLY R M L+++G + D +P+ILA +DR LA AP
Sbjct: 179 DNELVEIMFHGDGFLYNMARIMAGTLIEVGAGRMDADSIPEILARKDR-SLA--GPKAPC 235
Query: 291 HGLCLVEVKY 300
GL L +V+Y
Sbjct: 236 SGLILYDVEY 245
>gi|297620993|ref|YP_003709130.1| tRNA pseudouridine synthase A [Waddlia chondrophila WSU 86-1044]
gi|297376294|gb|ADI38124.1| tRNA pseudouridine synthase A [Waddlia chondrophila WSU 86-1044]
Length = 254
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 144/254 (56%), Gaps = 14/254 (5%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
F + L IAYDGT + GWQ P+I+ ++KAL + K E+++L GASRTD GVHA
Sbjct: 5 FNFLLTIAYDGTPFLGWQETKEGPSIEGELKKALRIILK---EEIKLNGASRTDAGVHAL 61
Query: 109 GQVAHFIT---PFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKI 165
GQ+A+F T P + L+SI N LLP +I+V I FHA + K Y Y++
Sbjct: 62 GQLANFHTTKKPHLFTLLKSI----NALLPGEIKVTAIEEVEASFHATLNNTGKQYRYRL 117
Query: 166 YNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFR 225
V P RH +H KL+ MR AA+ G HDF AF NV++ND + ++++ +
Sbjct: 118 SFGPVQFPHVRHREWHIPGKLDIEAMRLAAKSLEGTHDFKAFCNVKKNDTYDSTIRTLSK 177
Query: 226 FDVIEM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
+ E+ L++ +EG+ FLY+ RN+V L+ IGK+ I + + K++ DR +L
Sbjct: 178 LSLAELENDTLEVIMEGNHFLYKMARNIVGTLVYIGKKRIQLNTLKKLVLNGDRTQLGP- 236
Query: 285 ALSAPPHGLCLVEV 298
+AP HGL L V
Sbjct: 237 --TAPAHGLTLFHV 248
>gi|342164215|ref|YP_004768854.1| tRNA pseudouridine synthase A [Streptococcus pseudopneumoniae
IS7493]
gi|341934097|gb|AEL10994.1| tRNA pseudouridine synthase A [Streptococcus pseudopneumoniae
IS7493]
Length = 249
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 141/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVLHFDLPYQMDE-EKLRFALDTQSPEDIDVISIDLVADDFHCRYAKHSKTYEFIVDGGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M++A + G HDF+ F D++ ++ R D
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQEAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLRVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG + +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|402313098|ref|ZP_10832020.1| tRNA pseudouridine(38-40) synthase [Lachnospiraceae bacterium ICM7]
gi|400367137|gb|EJP20155.1| tRNA pseudouridine(38-40) synthase [Lachnospiraceae bacterium ICM7]
Length = 245
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 145/251 (57%), Gaps = 9/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ RL+++YDGT Y GWQ Q + TI+ ++ A ++KL E+ ++GASRTD+GVHA+G
Sbjct: 3 RIRLIVSYDGTNYCGWQKQPNGITIEEVLNNA---ISKLTGEETEIIGASRTDSGVHAYG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
VA F T + A+N LP DIR++ +H R + K Y Y+I N
Sbjct: 60 NVAVFDTNARM-AADKFAFAINQRLPDDIRIQYSDEVEAGWHPRKNDCIKTYTYRILNRK 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ P +R YA+ + L+ MR+A+ YF+G HDF++F + + + +PV+++F +V+
Sbjct: 119 IDIPTERLYAHFCYFNLDVDKMREASGYFIGTHDFTSFCS--QKSQASSPVRTIFSLEVL 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ ++ + + G GFLY +R + L+++G PP + +I+ ++RK + + P
Sbjct: 177 QDEDMITIVIRGDGFLYNMIRIIAGTLIKVGMGVYPPSHITEIMKAKNRKLAGQ---TMP 233
Query: 290 PHGLCLVEVKY 300
GL LVE++Y
Sbjct: 234 AKGLTLVEIEY 244
>gi|153853813|ref|ZP_01995169.1| hypothetical protein DORLON_01160 [Dorea longicatena DSM 13814]
gi|149753563|gb|EDM63494.1| tRNA pseudouridine synthase A [Dorea longicatena DSM 13814]
Length = 246
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 95/253 (37%), Positives = 144/253 (56%), Gaps = 10/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ R+ +AYDGT Y GWQ Q + TI+ + K+L R+T E++R++GASRTD+GVHA G
Sbjct: 3 RIRIFVAYDGTNYCGWQVQPNGVTIEEKLNKSLARLTG---EEIRIIGASRTDSGVHALG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAK-SKIYHYKIYND 168
VA F T S E ALN LP DI V ++H R+ SK Y Y IYN
Sbjct: 60 NVAVFDTESSIPP-ERFAYALNQRLPEDIVVVRSDEVPADWHPRYQENISKTYEYHIYNA 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
AV +P + Y + ++ MR A+Y VG+HDF +F N++ N + + V++V+ +
Sbjct: 119 AVPNPLKTRYCTFVSFPMDVEAMRAGAKYLVGEHDFVSFCNIRTNTQ--DTVRTVYDLII 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ + L + G+GFLY VR + +L+++G+ P+ V +IL D K +A
Sbjct: 177 EKKDDEIVLRITGNGFLYNMVRIIAGVLIRVGRGFYTPEKVKEIL---DAKVHTSEGATA 233
Query: 289 PPHGLCLVEVKYN 301
PP+GL L+++ YN
Sbjct: 234 PPNGLVLMKIDYN 246
>gi|419777885|ref|ZP_14303787.1| tRNA pseudouridine(38-40) synthase [Streptococcus oralis SK10]
gi|383187638|gb|EIC80082.1| tRNA pseudouridine(38-40) synthase [Streptococcus oralis SK10]
Length = 249
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 142/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG ++G+Q Q ++Q +EK L+R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYAFSGFQRQPHARSVQEEIEKTLMRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D +E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMD-VEKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M+ AA+ G HDF+ F D++ ++ D
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQIAAKKLEGTHDFTGFTASGTSVEDKVRTITEASLSVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DRK LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRK-LA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|383938394|ref|ZP_09991606.1| tRNA pseudouridine(38-40) synthase [Streptococcus pseudopneumoniae
SK674]
gi|383714696|gb|EID70690.1| tRNA pseudouridine(38-40) synthase [Streptococcus pseudopneumoniae
SK674]
Length = 249
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 141/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVLHFDLPYQMDE-EKLRFALDTQSPEDIDVISIDLVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M++A + G HDF+ F D++ ++ R D
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQEAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLRVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG + +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|418973282|ref|ZP_13521291.1| tRNA pseudouridine synthase A [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383349792|gb|EID27712.1| tRNA pseudouridine synthase A [Streptococcus pseudopneumoniae ATCC
BAA-960]
Length = 249
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 141/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVLHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M++A + G HDF+ F D++ ++ R D
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQEAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLRVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG + +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|337293193|emb|CCB91184.1| trNA pseudouridine synthase A 2 [Waddlia chondrophila 2032/99]
Length = 254
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 143/254 (56%), Gaps = 14/254 (5%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
F + L IAYDGT + GWQ P+I+ ++KAL + K E+++L GASRTD GVHA
Sbjct: 5 FNFLLTIAYDGTPFLGWQETKEGPSIEGELKKALRIILK---EEIKLNGASRTDAGVHAL 61
Query: 109 GQVAHFIT---PFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKI 165
GQ+A+F T P + L+SI N LLP +I+V I FHA K Y Y++
Sbjct: 62 GQLANFHTTKKPHLFTLLKSI----NALLPDEIKVTAIEEVEASFHATLDNTGKQYRYRL 117
Query: 166 YNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFR 225
V P RH +H KL+ MR AA+ G HDF AF NV++ND + ++++ +
Sbjct: 118 SFGPVQFPHVRHREWHIPGKLDIETMRLAAKSLEGTHDFKAFCNVKKNDTYDSTIRTLSK 177
Query: 226 FDVIEM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
+ E+ L++ +EG+ FLY+ RN+V L+ IGK+ I + + K++ DR +L
Sbjct: 178 LSLAELENDTLEVIMEGNHFLYKMARNIVGTLVYIGKKRIQLNTLKKLVLNGDRTQLGP- 236
Query: 285 ALSAPPHGLCLVEV 298
+AP HGL L V
Sbjct: 237 --TAPAHGLTLFHV 248
>gi|116511297|ref|YP_808513.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris
SK11]
gi|385839085|ref|YP_005876715.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris
A76]
gi|414073743|ref|YP_006998960.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris
UC509.9]
gi|123320604|sp|Q031N1.1|TRUA_LACLS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|116106951|gb|ABJ72091.1| Pseudouridylate synthase [Lactococcus lactis subsp. cremoris SK11]
gi|358750313|gb|AEU41292.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris
A76]
gi|413973663|gb|AFW91127.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 253
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 141/252 (55%), Gaps = 8/252 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ IAYDGT +AG+Q QT+ T+Q +EK L ++ E + L G+ RTD+GVHA+G
Sbjct: 3 RYKATIAYDGTDFAGFQSQTNQRTVQEEIEKVLSKLNSFE--PVILQGSGRTDSGVHAFG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF LE + L+ P DI V+++ ++HAR+ K Y Y + N
Sbjct: 61 QVIHFDLNGKARDLERLRFGLDTQTPADIAVKKVELVPDDWHARYQKHEKTYEYYLENSV 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
PF RH + Y LN LM+ A VG+HDF+ F + + V+++++ ++I
Sbjct: 121 TRSPFHRHSKAYFRYPLNFELMQGAMAKLVGQHDFTGF--TASGSSVDDKVRTIYQAEII 178
Query: 230 EMGAL-LQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
++ + G+GFLY+QVRNMV +++IG + +P + KIL +++R +A
Sbjct: 179 QLDKENFKFIFRGNGFLYKQVRNMVGTVIKIGNDRMPVSQIDKILTSKNRNFAGP---TA 235
Query: 289 PPHGLCLVEVKY 300
P GL L EVKY
Sbjct: 236 APEGLYLKEVKY 247
>gi|322388332|ref|ZP_08061936.1| tRNA pseudouridine synthase A [Streptococcus infantis ATCC 700779]
gi|417936673|ref|ZP_12579980.1| tRNA pseudouridine synthase A [Streptococcus infantis X]
gi|419842427|ref|ZP_14365775.1| tRNA pseudouridine(38-40) synthase [Streptococcus infantis ATCC
700779]
gi|321141004|gb|EFX36505.1| tRNA pseudouridine synthase A [Streptococcus infantis ATCC 700779]
gi|343400189|gb|EGV12709.1| tRNA pseudouridine synthase A [Streptococcus infantis X]
gi|385703904|gb|EIG41006.1| tRNA pseudouridine(38-40) synthase [Streptococcus infantis ATCC
700779]
Length = 249
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 141/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L ++ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTKLNK--GQAITIHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIEVVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M++A + G HDF+ F D++ ++ R D
Sbjct: 120 PKNPMRRHYATHYPYPLDVERMQKAVKKLEGTHDFTGFTAAGTSVEDKVRTITEASLRVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPIEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|402570866|ref|YP_006620209.1| pseudouridylate synthase I [Desulfosporosinus meridiei DSM 13257]
gi|402252063|gb|AFQ42338.1| pseudouridylate synthase I [Desulfosporosinus meridiei DSM 13257]
Length = 260
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 103/255 (40%), Positives = 139/255 (54%), Gaps = 12/255 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSP--PTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
RL +AYDGT Y G+Q Q PTIQ +E KL E++ L A RTD GVHA G
Sbjct: 5 RLRLAYDGTHYHGFQRQDKAYGPTIQGTLESVW---AKLVEEEVTLAMAGRTDAGVHASG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV ++ T E I A N LLP DIRV E +F++R+SA+ K Y Y I N
Sbjct: 62 QVVNYSTSARIPE-EKIPKAFNSLLPKDIRVLEAECVADDFNSRWSARWKRYDYLIDNKP 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ D FQR YAYH LNT M+QAA Y G H+F F + + ++++R V
Sbjct: 121 IPDTFQRLYAYHVPLPLNTDHMQQAAIYLEGCHNFKTFAAAGGDSKRFE--RTIYRCKVS 178
Query: 230 -EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E ++++ G GFLY VR +V L+ +G+ I P +P I+A+Q+R+ + + A
Sbjct: 179 REDKGMIRVTCIGDGFLYHMVRIIVGTLVDVGRGRILPGEIPDIIASQERR---RARMVA 235
Query: 289 PPHGLCLVEVKYNEE 303
P HGL LV V Y E
Sbjct: 236 PAHGLTLVHVNYTNE 250
>gi|116617361|ref|YP_817732.1| tRNA pseudouridine synthase A [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|339481338|ref|ZP_08656997.1| tRNA pseudouridine synthase A [Leuconostoc pseudomesenteroides KCTC
3652]
gi|122272438|sp|Q03ZL3.1|TRUA_LEUMM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|116096208|gb|ABJ61359.1| Pseudouridylate synthase [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 255
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/259 (37%), Positives = 146/259 (56%), Gaps = 13/259 (5%)
Query: 50 KWRLVIAYDGTRYAGWQFQT-----SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTG 104
+++ VIAYDG + G+Q QT S T+Q + K + ++ K +++VGASRTDTG
Sbjct: 3 RYKAVIAYDGAEFFGFQLQTKNGVESVRTVQGELNKVINKMAKNPSPQIKVVGASRTDTG 62
Query: 105 VHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYK 164
VHA+GQV HF PF+ D E + +N LLP D+ V + +FHARF+ SK Y Y+
Sbjct: 63 VHAFGQVVHFDLPFNIDP-EGVRKGMNTLLPFDVVVNHVEHVSDDFHARFNTHSKRYIYR 121
Query: 165 IYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF 224
+ DPF+R Y H +KL+ ++ A +G+HDF++F + ++ +
Sbjct: 122 VSTTDYKDPFKRKYTGHFHWKLDINRIKAALPDLLGEHDFASF--AASGNETATTIRLIT 179
Query: 225 RFDVIEMGALLQL--EVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELA 282
R DV E ++ EG+ FLY Q+R MV +LL+IG P + +++ +DR E A
Sbjct: 180 RADVDEKPEEHEIVFTFEGNAFLYNQIRIMVGVLLEIGTGKRPVHDIVRLIEVKDR-EQA 238
Query: 283 KYALSAPPHGLCLVEVKYN 301
+Y +AP GL L E+ YN
Sbjct: 239 RY--TAPASGLYLDEIDYN 255
>gi|308270748|emb|CBX27358.1| tRNA pseudouridine synthase A [uncultured Desulfobacterium sp.]
Length = 246
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 143/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
++L I YDGT + GWQ Q + TIQ +EKA+ +TK + + L GA RTD GVHA Q
Sbjct: 5 FKLTIEYDGTAFNGWQRQLNGRTIQGEIEKAIFAMTK---QKIALTGAGRTDAGVHALAQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+FI + + +S + LN LLP DI ++ +FH+R+ +KSK+Y YKI N +
Sbjct: 62 VANFICDTNLEP-DSFYRGLNSLLPGDIIIKLCEQVCEKFHSRYDSKSKLYRYKILNRPL 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
R+Y + L+ MR+A + G DF AF + + +++V R ++IE
Sbjct: 121 PSAIGRNYLWFIKSPLDLKAMREAVLFIAGTRDFKAFEGSGSPRK--STIRTVLRSELIE 178
Query: 231 -MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
++Q E+E GFL VRN+V L+ +G + P + IL ++DR+ K + +AP
Sbjct: 179 NEDNIIQFEIEADGFLRFMVRNIVGSLISVGLGKLKPLDIKTILDSKDRR---KASATAP 235
Query: 290 PHGLCLVEVKY 300
P GL LV+V+Y
Sbjct: 236 PGGLFLVKVRY 246
>gi|331268447|ref|YP_004394939.1| tRNA pseudouridine synthase A [Clostridium botulinum BKT015925]
gi|329124997|gb|AEB74942.1| tRNA pseudouridine synthase A [Clostridium botulinum BKT015925]
Length = 246
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 139/249 (55%), Gaps = 8/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+I YDG+ Y+GWQ Q T+Q +E+A+ ++TK + E ++G SRTD GVHA V
Sbjct: 6 KLIIEYDGSNYSGWQKQKHSITVQQKIEEAISQITKTDTE---IIGCSRTDAGVHARNFV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+FIT S A+N LP DI +++ S +FHARF +K K Y Y I N
Sbjct: 63 ANFITNSSVPP-SKFKYAINSKLPKDIVIKKSSEVSLDFHARFHSKGKKYVYTILNREEP 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
R+ YH LN M++A++YF+G H+F +F + + + +++++ DV +
Sbjct: 122 PTIDRNVMYHFNKDLNVDAMKEASKYFIGSHEFDSFYK-KSGSSVKSTLRTIYYCDVTKC 180
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
+++ V G GFLY VR M L++ G I P+ + I+ +DR+ + S PP
Sbjct: 181 EDVIKFTVIGEGFLYNMVRIMAGTLIEAGIGRIKPEEIKFIILAKDRERAGR---SLPPQ 237
Query: 292 GLCLVEVKY 300
GLCL EV Y
Sbjct: 238 GLCLQEVLY 246
>gi|253701944|ref|YP_003023133.1| tRNA pseudouridine synthase A [Geobacter sp. M21]
gi|259550393|sp|C6E4S9.1|TRUA_GEOSM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|251776794|gb|ACT19375.1| tRNA pseudouridine synthase A [Geobacter sp. M21]
Length = 247
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 135/251 (53%), Gaps = 8/251 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+I YDGT Y GWQ Q + T+Q +E+AL + + L G+ RTD GVHA G V
Sbjct: 5 KLIIEYDGTAYCGWQVQPNGRTVQEALEEALASMLGGKTA---LHGSGRTDAGVHARGMV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T L + LN LLP DI VRE EFH RF A +K Y Y + D +
Sbjct: 62 ACFQTDKGMP-LRAFREGLNCLLPADIAVREACEVPLEFHPRFDALAKHYRYTMLLDDLR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P R A+ KL+ MR A FVG+HDF+AF N V+ ++ D+++
Sbjct: 121 SPLSRLTAWRLKGKLDVDAMRSACAAFVGEHDFAAF--RASNCAAKTTVRRIYSMDLVQE 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G L L+V+GSGFL VR + L+++G+ + V ++L DR++ ++ PP
Sbjct: 179 GPFLHLDVKGSGFLKNMVRIITGTLIEVGQGKKSVEDVARLLKGSDRQQ--NSGMTVPPQ 236
Query: 292 GLCLVEVKYNE 302
GLCL++V Y E
Sbjct: 237 GLCLMQVYYPE 247
>gi|440780606|ref|ZP_20959077.1| tRNA pseudouridine synthase A [Clostridium pasteurianum DSM 525]
gi|440221194|gb|ELP60399.1| tRNA pseudouridine synthase A [Clostridium pasteurianum DSM 525]
Length = 245
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 145/253 (57%), Gaps = 16/253 (6%)
Query: 52 RLVIAYDGTRYAGWQFQT-SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
++ I YDG+RY GWQ Q TIQ +E L +K+ E+++++G RTD GVHA
Sbjct: 5 KMTIQYDGSRYKGWQKQKYGESTIQYKIENIL---SKMTGENIQVIGCGRTDAGVHAENY 61
Query: 111 VAHFITPFSYDGLESIHAALNGL---LPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
+A+F T +I+ L+ L LP DI V+E+ FHAR++AKSK Y Y+I N
Sbjct: 62 IANFHTECEL----TINTMLDYLYEFLPEDIVVKEMEDVHERFHARYNAKSKTYVYRIDN 117
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
+ D F R Y YH+ +LN M++AAE +G HDF +F N++ N++ + ++++ +
Sbjct: 118 NKFRDVFTRKYIYHTDEQLNLKEMKKAAEILIGTHDFKSFTNLKSNNK--STIRTLNYIN 175
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
++E ++++E+ +GFL VR +V LL+ GK + + KIL + R+E Y
Sbjct: 176 ILEKDNIIEMELNANGFLLNMVRIIVGTLLEAGKGKLSTVDIQKILREKKREE---YGPI 232
Query: 288 APPHGLCLVEVKY 300
A GL L V+Y
Sbjct: 233 AYSKGLYLKNVQY 245
>gi|260588018|ref|ZP_05853931.1| tRNA pseudouridine synthase A [Blautia hansenii DSM 20583]
gi|331082412|ref|ZP_08331538.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 6_1_63FAA]
gi|260541545|gb|EEX22114.1| tRNA pseudouridine synthase A [Blautia hansenii DSM 20583]
gi|330400898|gb|EGG80499.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 6_1_63FAA]
Length = 244
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 142/253 (56%), Gaps = 10/253 (3%)
Query: 49 FKWRLVIAYDGTRYAGWQFQT-SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHA 107
+RL I YDG+RY GWQ Q + TIQ +E L TK+ ++++ GA RTD GVHA
Sbjct: 1 MNYRLDIQYDGSRYGGWQRQKDTDNTIQGKIEDVL---TKMLGTEVQIQGAGRTDAGVHA 57
Query: 108 WGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
GQVA+F E I LN LP DI + ++S A FH+R +AK K+Y Y+I +
Sbjct: 58 KGQVANFHADCE-KSCEEICQYLNEYLPEDIEISKVSEAEERFHSRLNAKEKVYQYRIVS 116
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
+ F+R Y L+ M++AA+Y G HDF +F + ++ + + V++++ +
Sbjct: 117 GIHKNVFERKYQCPLHETLDVNAMQEAAKYLEGTHDFKSFCSNKKMKK--SSVRTIYSIE 174
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
++++ + + G+GFLY VR + L+++G+ P+ + IL DRKE +
Sbjct: 175 IVDLTQEIVITYTGNGFLYNMVRILTGTLIEVGRGRRKPEEMKGILEGCDRKEA---GFT 231
Query: 288 APPHGLCLVEVKY 300
AP GL L+EV+Y
Sbjct: 232 APARGLTLLEVRY 244
>gi|27262396|gb|AAN87479.1| tRNA pseudouridine synthase A [Heliobacillus mobilis]
Length = 249
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 133/250 (53%), Gaps = 17/250 (6%)
Query: 55 IAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHF 114
++YDGT Y G+Q Q P + I ++ + + L E++++ A RTD GVHA GQV F
Sbjct: 1 MSYDGTSYHGFQTQEDPTNLPTIQDELMRAIQVLTGEEVKITCAGRTDAGVHARGQVVDF 60
Query: 115 ITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPF 174
+T S E A+N LLP DI V + +FH+RF A K Y Y IYN + PF
Sbjct: 61 LTT-SRIPDEKFPLAMNSLLPKDIAVVKAETVAEDFHSRFGALGKHYRYSIYNHRIHSPF 119
Query: 175 QRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFR------FDV 228
Y+Y L+ M++AA YFVG HDF F +PVK R V
Sbjct: 120 HHRYSYQVYPPLHVAAMQEAAGYFVGTHDFRGFCATG------SPVKDFVRTIWHCTLTV 173
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E LL ++V G GFLY VR + L+ +GK I P+ +P+I+A++DR + +A
Sbjct: 174 TEENLLL-MDVMGDGFLYNMVRIITGTLVDVGKGKIAPESIPQIIASRDRTQAGT---TA 229
Query: 289 PPHGLCLVEV 298
PP GL L+EV
Sbjct: 230 PPQGLALLEV 239
>gi|422420178|ref|ZP_16497133.1| tRNA pseudouridine synthase A [Listeria seeligeri FSL N1-067]
gi|313631806|gb|EFR98984.1| tRNA pseudouridine synthase A [Listeria seeligeri FSL N1-067]
Length = 248
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 143/253 (56%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG+ + G+Q Q + T+Q +EKAL ++ K + +R+ + RTDTGVHA G
Sbjct: 3 RYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALKKMHK--GKSVRVTASGRTDTGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + E AL + P DI + A+ +FHARF K Y Y +
Sbjct: 61 QVIHFDSELDISA-EKFQKALQVMTPFDISFLIVEEALADFHARFGTVGKEYRYVVKRTK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
V DPF R++A H Y+LN M+ A+E VG+HDF++F + R +R + V++++ D
Sbjct: 120 VFDPFSRNFALHYPYELNLEKMKLASERLVGEHDFTSFCSA-RTER-DSKVRTLYSIDFY 177
Query: 230 EM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E L + +G+GFLY VR + LL G+ I PD + K L +DR++L + +A
Sbjct: 178 EEDDDTLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDITKALLARDRQKLI--SKTA 235
Query: 289 PPHGLCLVEVKYN 301
PP GL L V Y
Sbjct: 236 PPQGLYLWRVDYE 248
>gi|294497016|ref|YP_003560716.1| tRNA pseudouridine synthase A [Bacillus megaterium QM B1551]
gi|295702381|ref|YP_003595456.1| tRNA pseudouridine synthase A [Bacillus megaterium DSM 319]
gi|384049237|ref|YP_005497254.1| tRNA pseudouridine synthase A [Bacillus megaterium WSH-002]
gi|294346953|gb|ADE67282.1| tRNA pseudouridine synthase A [Bacillus megaterium QM B1551]
gi|294800040|gb|ADF37106.1| tRNA pseudouridine synthase A [Bacillus megaterium DSM 319]
gi|345446928|gb|AEN91945.1| tRNA pseudouridine synthase A [Bacillus megaterium WSH-002]
Length = 246
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 139/252 (55%), Gaps = 9/252 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ + ++AYDGT ++G+Q Q + T+Q +E L K+ + + + + RTDT VHA G
Sbjct: 3 RLKCIVAYDGTHFSGYQVQPNKRTVQLEIEAVL---EKMHNKKVPIYASGRTDTNVHAQG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF T + + ALN +LP DI ++ + FHAR+ SK Y Y I
Sbjct: 60 QVIHFDTNLNI-PCDKWKKALNSMLPDDIVMKNVCEVDAHFHARYDVTSKEYRYHILRGE 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R YAYH Y L+ + M++A Y +G HDF++F + + + + ++++++ D+
Sbjct: 119 DRNPFTRSYAYHYPYPLDYSKMKKAITYLLGTHDFTSFCSAR--TEVEDKIRTIYKIDMY 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E + L GSGFLY VR +V LL++G+ I PD + IL ++ R K +AP
Sbjct: 177 EENSQLVFRFVGSGFLYNMVRILVGTLLEVGQGRIEPDAIKDILESKSRPRAGK---TAP 233
Query: 290 PHGLCLVEVKYN 301
GL L V Y+
Sbjct: 234 SQGLYLWRVFYD 245
>gi|170761533|ref|YP_001788787.1| tRNA pseudouridine synthase A [Clostridium botulinum A3 str. Loch
Maree]
gi|169408522|gb|ACA56933.1| tRNA pseudouridine synthase A [Clostridium botulinum A3 str. Loch
Maree]
Length = 246
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 135/251 (53%), Gaps = 11/251 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPP--TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+L + YDGT Y GWQ Q + T+Q +EK + +TK E + ++G SRTD+GVHA G
Sbjct: 5 KLKLEYDGTNYCGWQKQKNEKFITLQGTLEKVISNITK---EKVEIIGVSRTDSGVHAKG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
V +F T E++ +N LP DI V EFH+RF +K K Y Y + N
Sbjct: 62 YVCNFFTNTRIPP-ENLQKVINNNLPQDIVVLSSEEVSNEFHSRFCSKGKTYEYTVLNSP 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
R+Y + KLN M+ A+ YF+G HDFSAF + + V+++ F++
Sbjct: 121 QPIAIGRNYIFQFKDKLNIDNMKIASRYFIGTHDFSAFKT--KGSSVKTSVRTINEFEID 178
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G ++ + G GFLY VR +V +L++IG P+ V ++ ++DR++ K P
Sbjct: 179 KKGDFIKFTITGDGFLYNMVRIIVGILIEIGLNKREPEYVEYVIKSKDRRKAGK---CVP 235
Query: 290 PHGLCLVEVKY 300
GLCL EV Y
Sbjct: 236 SSGLCLKEVFY 246
>gi|227431309|ref|ZP_03913362.1| pseudouridylate synthase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|227352902|gb|EEJ43075.1| pseudouridylate synthase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
Length = 255
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/259 (37%), Positives = 146/259 (56%), Gaps = 13/259 (5%)
Query: 50 KWRLVIAYDGTRYAGWQFQT-----SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTG 104
+++ VIAYDG + G+Q QT S T+Q + K + ++ K +++VGASRTDTG
Sbjct: 3 RYKAVIAYDGAEFFGFQLQTKNGVESVRTVQGELNKVINKMAKNPSPQIKVVGASRTDTG 62
Query: 105 VHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYK 164
VHA+GQV HF PF+ D E + +N LLP D+ V + +FHARF+ SK Y Y+
Sbjct: 63 VHAFGQVIHFDLPFNIDP-EGVRKGMNTLLPFDVVVNHVEHVSDDFHARFNTHSKRYIYR 121
Query: 165 IYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF 224
+ DPF+R Y H +KL+ ++ A +G+HDF++F + ++ +
Sbjct: 122 VSTTDYKDPFKRKYTGHFHWKLDINRIKAALPDLLGEHDFASF--AASGNETATTIRLIT 179
Query: 225 RFDVIEMGALLQL--EVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELA 282
R DV E ++ EG+ FLY Q+R MV +LL+IG P + +++ +DR E A
Sbjct: 180 RADVDEKPEEHEIVFTFEGNAFLYNQIRIMVGVLLEIGTGKRPVHDIVRLIEVKDR-EQA 238
Query: 283 KYALSAPPHGLCLVEVKYN 301
+Y +AP GL L E+ YN
Sbjct: 239 RY--TAPASGLYLDEIDYN 255
>gi|289167524|ref|YP_003445793.1| tRNA pseudouridine synthase A [Streptococcus mitis B6]
gi|288907091|emb|CBJ21925.1| tRNA pseudouridine synthase A [Streptococcus mitis B6]
Length = 249
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--EQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYTKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ MR+A + G HDF+ F D++ ++ D
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMREAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLTVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|313884603|ref|ZP_07818364.1| tRNA pseudouridine synthase A [Eremococcus coleocola
ACS-139-V-Col8]
gi|312620387|gb|EFR31815.1| tRNA pseudouridine synthase A [Eremococcus coleocola
ACS-139-V-Col8]
Length = 256
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 146/258 (56%), Gaps = 11/258 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRL-VGASRTDTGVHAW 108
++ + + YDG+ Y G+Q Q + P++Q +++AL+++ K + L V + RTD+GVHA
Sbjct: 3 RYAIKVEYDGSNYVGYQVQPNGPSVQAQLDRALLKLAKRPADHPVLTVASGRTDSGVHAL 62
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF F L ++ ALN +L DIRV +S P+FHAR+ A K Y Y+I
Sbjct: 63 GQVVHFDLDFEIHPL-ALAKALNSILNKDIRVVAVSQVAPDFHARYHAIGKAYLYRIDTQ 121
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
A DPF+R Y H Y+ + M++A VG+HDF++F + + + V+++ +F
Sbjct: 122 AYPDPFKRFYTLHHPYRYDLGKMQRALTDLVGQHDFTSFCSTHSDKE--DKVRTI-KFAT 178
Query: 229 IE---MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
IE + L+ + G+GFLY VR +V LLQIG P D ++LA +DR +
Sbjct: 179 IEEDLVNQELRFMIAGNGFLYNMVRIIVGTLLQIGDGLKPVDEFKRLLAVKDRNQAGP-- 236
Query: 286 LSAPPHGLCLVEVKYNEE 303
+A P GL L V Y E+
Sbjct: 237 -TADPSGLYLYRVDYKED 253
>gi|433447344|ref|ZP_20410941.1| tRNA pseudouridine synthase A [Anoxybacillus flavithermus
TNO-09.006]
gi|432000008|gb|ELK20915.1| tRNA pseudouridine synthase A [Anoxybacillus flavithermus
TNO-09.006]
Length = 246
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 140/251 (55%), Gaps = 11/251 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ IAYDGT +AG+Q Q T+Q +E+AL + K + +R+ + RTD VHA GQV
Sbjct: 5 KCTIAYDGTYFAGYQIQQQKRTVQGELERALSLIHK--GQFVRVYASGRTDATVHAHGQV 62
Query: 112 AHFITPFSY-DGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
HF TP S DG ALN LLP D+ V+E S P FHARFS K K Y Y+++
Sbjct: 63 IHFDTPLSIPDG--KWPKALNALLPDDVIVKEASEVSPSFHARFSVKKKEYRYRVWTGE- 119
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
+ F RHY YH Y LN M +A +G HDF++F + + + + V++++ +VI
Sbjct: 120 KNVFLRHYVYHYPYPLNVAAMNEALHDLIGTHDFTSFCSAK--TEIEDKVRTIYEAEVIP 177
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G L + G+GFLY VR +V +L++G+ + + IL ++R K +AP
Sbjct: 178 QGDELIFRLVGNGFLYNMVRIIVGTVLEVGRGERRAEEMKTILEQKNRSAAGK---TAPG 234
Query: 291 HGLCLVEVKYN 301
HGL L V Y+
Sbjct: 235 HGLYLWHVSYD 245
>gi|418975123|ref|ZP_13523032.1| tRNA pseudouridine synthase A [Streptococcus oralis SK1074]
gi|383348494|gb|EID26453.1| tRNA pseudouridine synthase A [Streptococcus oralis SK1074]
Length = 249
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 140/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K E + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GEAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M++A + G HDF+ F D++ ++ D
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQEAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLSVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG + +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNDRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|417846650|ref|ZP_12492643.1| tRNA pseudouridine synthase A [Streptococcus mitis SK1073]
gi|339458283|gb|EGP70826.1| tRNA pseudouridine synthase A [Streptococcus mitis SK1073]
Length = 249
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ K Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHGKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ MR+A + G HDF+ F D++ ++ R D
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMREAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLRVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|168186842|ref|ZP_02621477.1| tRNA pseudouridine synthase A [Clostridium botulinum C str. Eklund]
gi|169295253|gb|EDS77386.1| tRNA pseudouridine synthase A [Clostridium botulinum C str. Eklund]
Length = 245
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 138/250 (55%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDGTRY GWQ + TIQ +E L +L E + L+ + RTD GVHA Q
Sbjct: 5 KLTIQYDGTRYKGWQKLGNNDTTIQHKIESVL---NELLGEKVSLMASGRTDAGVHANMQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T E I L LP DI V ++ A FH+R++ K K+Y Y+I+N V
Sbjct: 62 VANFKTDSEISNDE-IFKYLYKYLPQDIVVTSVNNASDNFHSRYNVKEKVYTYRIHNSEV 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
D F R Y+YH KL+ M++A++ F+G+HDF +F ++ + + VK++ +
Sbjct: 121 HDVFTRKYSYHIKEKLDLKKMKEASKLFIGEHDFKSFTALKSKKK--STVKAINSITFRK 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+++ G+GFLY+ +R +V L+Q G I D + I+ +DR + +AP
Sbjct: 179 KENDIEIVFSGNGFLYKMIRILVGTLIQAGLNKISLDEIQNIMDKKDRNIAPE---TAPA 235
Query: 291 HGLCLVEVKY 300
HGL L EVKY
Sbjct: 236 HGLTLTEVKY 245
>gi|229074353|ref|ZP_04207391.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock4-18]
gi|228708795|gb|EEL60930.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock4-18]
Length = 245
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG RY GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARYKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFKSDEKLVE-HKVKKYLNQYLPNDISITNVEEVPDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R ++ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +V
Sbjct: 120 HTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLEVS 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLESVEF 245
>gi|293402539|ref|ZP_06646674.1| tRNA pseudouridine synthase A [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|373453099|ref|ZP_09544997.1| tRNA pseudouridine synthase A [Eubacterium sp. 3_1_31]
gi|291304053|gb|EFE45307.1| tRNA pseudouridine synthase A [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|371964246|gb|EHO81776.1| tRNA pseudouridine synthase A [Eubacterium sp. 3_1_31]
Length = 251
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 144/255 (56%), Gaps = 11/255 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ V++YDG+ Y GWQ Q + +IQ ++E+AL K+ + D+ +V + RTD GVHA
Sbjct: 3 RYKAVVSYDGSSYGGWQKQLNTTSIQEVIEQAL---AKMHKHDVAIVASGRTDAGVHAIA 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + I ALN LLP DIR++ + FHARF A K Y Y I ND
Sbjct: 60 QVFHFDSEMKIQEKHWI-KALNSLLPKDIRIQSVKQVTEAFHARFDAIGKRYDYLISND- 117
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNP-VKSVFRFDV 228
+++PF+ +Y +KL+ M++ A +G HDF++F + + + R P VK++ R +V
Sbjct: 118 ILNPFKENYMAKDAHKLDVAYMQECATVLIGTHDFTSFTSNKIDPR--KPRVKTITRLEV 175
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
++ + + EG+GFL VR + L++ GK I + K+L +D K +Y A
Sbjct: 176 LQEKDHVHMIFEGNGFLRYMVRMLSQTLIEAGKHRITKADIKKMLEAKD-KHACRY--KA 232
Query: 289 PPHGLCLVEVKYNEE 303
P GL LV V Y ++
Sbjct: 233 VPQGLYLVRVDYADD 247
>gi|420146270|ref|ZP_14653698.1| Pseudouridine synthase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398402001|gb|EJN55400.1| Pseudouridine synthase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 261
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 145/258 (56%), Gaps = 13/258 (5%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLV--GASRTDTGVH 106
++++ IAYDGT++AG+Q Q T+Q ++EKA V + + R+V G+ RTD GVH
Sbjct: 2 LRYKVTIAYDGTQFAGFQLQVKQRTVQGVMEKA---VRTIAKSPTRIVVNGSGRTDAGVH 58
Query: 107 AWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIY 166
A GQV HF PF+ ++ ALN LLP D+ V++ A PEFHAR+ K Y Y++
Sbjct: 59 ALGQVVHFDFPFALPA-AAMLKALNSLLPLDVVVKDCQVADPEFHARYDTTGKRYVYRVS 117
Query: 167 NDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRF 226
DPF+R Y H Y L+ ++ A F+G HDFS+F + N V+++F
Sbjct: 118 RGYYTDPFRRFYTGHWKYALDVDKIQLALTDFIGTHDFSSF--AASGGSIKNKVRTIFAA 175
Query: 227 DVIEMGALLQL--EVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
V E A +L E G+GFLY VR MV + L+IG P + ++ +DR + A+Y
Sbjct: 176 TVTEDPASDELIFEFYGNGFLYNMVRIMVGVALEIGNGRRPVHDILRLYEVKDRTQ-ARY 234
Query: 285 ALSAPPHGLCLVEVKYNE 302
+AP GL L +V Y +
Sbjct: 235 --TAPASGLYLKKVYYGD 250
>gi|229095128|ref|ZP_04226123.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-29]
gi|423444609|ref|ZP_17421514.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG4X2-1]
gi|423450436|ref|ZP_17427314.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG5O-1]
gi|423467658|ref|ZP_17444426.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG6O-1]
gi|423537060|ref|ZP_17513478.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuB2-9]
gi|423542785|ref|ZP_17519174.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuB4-10]
gi|228688313|gb|EEL42196.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-29]
gi|401124821|gb|EJQ32582.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG5O-1]
gi|401167843|gb|EJQ75117.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuB4-10]
gi|402410531|gb|EJV42932.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG4X2-1]
gi|402413273|gb|EJV45619.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG6O-1]
gi|402460244|gb|EJV91967.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuB2-9]
Length = 245
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG RY GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARYKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFKSDEKLVE-HKVKKYLNQYLPNDISITSVEEVPDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R ++ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +V
Sbjct: 120 HTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLEVS 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLESVEF 245
>gi|347549899|ref|YP_004856227.1| putative pseudouridylate synthase I [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|346982970|emb|CBW87007.1| Putative pseudouridylate synthase I [Listeria ivanovii subsp.
ivanovii PAM 55]
Length = 248
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 143/253 (56%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ VI+YDG+ + G+Q Q + T+Q +EKAL ++ K + +R+ + RTDTGVHA G
Sbjct: 3 RYKAVISYDGSGFYGYQVQPNTRTVQAEIEKALKKMHK--GKSVRVTASGRTDTGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + + E AL + P DI + A +FHARF K Y Y +
Sbjct: 61 QVIHFDSELAVSA-EKFQKALQVMTPFDISFITVEEAPADFHARFGTVGKEYRYVVKRTK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
V DPF R++A H Y+LN M+ A+E +G+HDF++F + R +R + V++++ D
Sbjct: 120 VFDPFSRNFALHYPYELNVEQMKIASERLIGEHDFTSFCSA-RTER-DSKVRTLYSIDFY 177
Query: 230 EM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E L + +G+GFLY VR + LL G+ I PD + K L +DR++L + +A
Sbjct: 178 EEDNETLVICFQGNGFLYNMVRILTGTLLDAGQGRISPDDITKALLARDRQKLI--SKTA 235
Query: 289 PPHGLCLVEVKYN 301
PP GL L V Y
Sbjct: 236 PPQGLYLWRVDYE 248
>gi|149196320|ref|ZP_01873375.1| tRNA pseudouridine synthase A [Lentisphaera araneosa HTCC2155]
gi|149140581|gb|EDM28979.1| tRNA pseudouridine synthase A [Lentisphaera araneosa HTCC2155]
Length = 276
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 138/256 (53%), Gaps = 7/256 (2%)
Query: 51 WRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
++L I +DGT + GWQ Q +Q +EKAL T ++++ G+ RTD GVHA+G
Sbjct: 4 YKLSIQFDGTTWFGWQSQNDFEAVQEQIEKAL--NTLYNCSEIKIDGSGRTDAGVHAFGL 61
Query: 111 VAHFITP-FSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
A F P S +++ LN LLP IR+R +FHARFS K Y Y I N
Sbjct: 62 CATFTEPKISKFTSDTLRKGLNALLPVSIRIRSALQCETDFHARFSCIGKTYVYFIDNST 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
P Y++H KLN MRQ+ ++ GKHDFSAF V R + + +++VF+ ++I
Sbjct: 122 TSSPILAPYSWHMRKKLNREKMRQSLQHLEGKHDFSAFT-VDRKNLQGHAIRTVFKAELI 180
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E+G ++ L G GFLYR VR+M ++ +G E P L + R E ++AP
Sbjct: 181 EIGHIVALLFTGDGFLYRMVRSMAGEVVNVGMEFQNPQHTLDALESHQRSEA---GVTAP 237
Query: 290 PHGLCLVEVKYNEEHL 305
GL L + Y++E +
Sbjct: 238 AKGLFLGQCYYSKEEM 253
>gi|291542954|emb|CBL16064.1| pseudouridylate synthase I [Ruminococcus bromii L2-63]
Length = 266
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 131/232 (56%), Gaps = 15/232 (6%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG--- 109
L I+YDG + GWQ Q + T+Q + AL +K+ D + G SRTD+GVHA
Sbjct: 15 LTISYDGKEFHGWQIQQNAMTVQEAFQTAL---SKIIGNDFDVKGCSRTDSGVHANMYCI 71
Query: 110 --QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
+ H I P E + AALN LP I V + P+FHAR+S SK Y YKI+N
Sbjct: 72 SLKTEHPIKP------ERLKAALNRWLPLSIAVLDCKEVAPDFHARYSCTSKEYIYKIWN 125
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
V +PF YA H YK++ L+ +AA+ +VG+HDF++F + ++ + ++V F
Sbjct: 126 SEVRNPFLDGYALHYRYKIDENLLDKAAQAYVGRHDFTSFCTLDNREK-GDMTRNVKAFS 184
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRK 279
V G L+ ++VE GFLY VR MV LL+I + I PD +P I+ ++RK
Sbjct: 185 VTREGDLVTMKVEADGFLYNMVRIMVGTLLRIQQGKIAPDEIPSIIEKKNRK 236
>gi|228950979|ref|ZP_04113100.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228808706|gb|EEM55204.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 250
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 139/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 9 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 65
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 66 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 124
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ F R Y+ H KLN M+ AA++ VG HDF+AF N + + + V+ V+ DV+
Sbjct: 125 HTNLFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVM 182
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 183 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQI---NCLAE 239
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 240 ASGLYLENVEF 250
>gi|404416694|ref|ZP_10998509.1| tRNA pseudouridine synthase A [Staphylococcus arlettae CVD059]
gi|403490898|gb|EJY96428.1| tRNA pseudouridine synthase A [Staphylococcus arlettae CVD059]
Length = 267
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 98/272 (36%), Positives = 145/272 (53%), Gaps = 16/272 (5%)
Query: 55 IAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHF 114
I+Y GT++ G+Q Q S T+Q EK L R + + +R+ SRTD GVHA Q HF
Sbjct: 7 ISYLGTQFMGFQIQQSGRTVQQQFEKILKR---MHKRHVRIHPTSRTDRGVHALEQYFHF 63
Query: 115 ITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPF 174
T + E A+N LP DI V +++ EFH R+ K Y YK+Y + DPF
Sbjct: 64 DTELNI-APEKWKYAMNSALPDDILVHDVTVVDDEFHCRYDCLGKSYRYKVYQTSQRDPF 122
Query: 175 QRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGAL 234
Q H +L+ T M QAA+ FVG HDF+ F + + + + V+++++ ++I
Sbjct: 123 QSGLKTHVNVQLDLTKMNQAAQAFVGTHDFTGFCS--QKTEVESKVRTLYQSEIIANSDG 180
Query: 235 LQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLC 294
V GSGFLY VR +VA L+++GK P+ VP++L ++DR E+ +AP GL
Sbjct: 181 FDYVVTGSGFLYNMVRVLVAFLIEVGKGKRQPEDVPRLLESKDRNEV---PFTAPAEGLY 237
Query: 295 LVEVKYNEEHLRLPAACPLSSFGRHHSVRKCK 326
L EH+ L A L FG ++ + K
Sbjct: 238 L-------EHVYLSEATLLEDFGNDITIHRKK 262
>gi|423507193|ref|ZP_17483776.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HD73]
gi|449087217|ref|YP_007419658.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|402444711|gb|EJV76590.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HD73]
gi|449020974|gb|AGE76137.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 245
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 139/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ F R Y+ H KLN M+ AA++ VG HDF+AF N + + + V+ V+ DV+
Sbjct: 120 HTNLFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|429204100|ref|ZP_19195393.1| tRNA pseudouridine synthase [Lactobacillus saerimneri 30a]
gi|428147599|gb|EKW99822.1| tRNA pseudouridine synthase [Lactobacillus saerimneri 30a]
Length = 253
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 143/255 (56%), Gaps = 9/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ IAYDGT +AG+Q Q T+Q ++E AL ++ K + E + +VG+ RTD GVHA
Sbjct: 4 RYKVTIAYDGTNFAGFQKQPQQRTVQSVIEDALNKMNKTD-EHIFIVGSGRTDAGVHALA 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P L + LN +LP D+ V++ FHARFS K Y Y++
Sbjct: 63 QVIHFDFPHDIPAL-GMKRGLNSMLPLDLEVKDCEIVDDSFHARFSTHGKRYMYRVSRGE 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
++PF+R Y H Y L+ +R A VG HDF++FV R + V++++ V
Sbjct: 122 FVNPFKRFYTAHYKYPLDIDKIRAALPDVVGTHDFTSFVAAGSQAR--DHVRTIYEATVR 179
Query: 230 EMGALLQL--EVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E A ++ E G+GFLY QVR MVA LL+IG+ P ++ ++RKE + +
Sbjct: 180 EDHANDEVIFEFYGNGFLYNQVRIMVAALLEIGRGQRPVHDFLRLYEVKNRKECYR---T 236
Query: 288 APPHGLCLVEVKYNE 302
AP GL L EV YN+
Sbjct: 237 APASGLYLKEVVYNQ 251
>gi|168493506|ref|ZP_02717649.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC3059-06]
gi|183576362|gb|EDT96890.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC3059-06]
Length = 249
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q+ ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQSHARSVQEEIEKTLTRLNK--GQTITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVLHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ MR+A + G HDF+ F D++ ++ D
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMREAIKKLEGTHDFTGFTASGTSVEDKIRTITEASLTVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E+ Y E
Sbjct: 235 AAPNGLYLKEICYEE 249
>gi|229114082|ref|ZP_04243507.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock1-3]
gi|423381543|ref|ZP_17358826.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG1O-2]
gi|228669352|gb|EEL24769.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock1-3]
gi|401629452|gb|EJS47269.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG1O-2]
Length = 245
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG RY GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARYKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFKSDEKLVE-HKVKKYLNQYLPNDISITSVEEVPDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R ++ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +V
Sbjct: 120 HTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLEVS 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L +++
Sbjct: 235 ASGLYLESIEF 245
>gi|218134082|ref|ZP_03462886.1| hypothetical protein BACPEC_01972 [[Bacteroides] pectinophilus ATCC
43243]
gi|217991457|gb|EEC57463.1| tRNA pseudouridine synthase A [[Bacteroides] pectinophilus ATCC
43243]
Length = 272
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 138/252 (54%), Gaps = 7/252 (2%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+ +R+ + YDG RYAGWQ + K + K+ D+ + SRT+TGVHA+
Sbjct: 28 YNYRMTLEYDGGRYAGWQRMGRDDNSNTVSAKITEVLKKMTGSDVEIFCGSRTETGVHAY 87
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQVA+F Y E I LN LP DI V E+ FH++ +AKS+ Y Y++
Sbjct: 88 GQVANFKLDREYRARE-IQNYLNRYLPQDIAVLELEETQERFHSQLNAKSRTYVYRVDTK 146
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
+ + F+R Y YH+ +K + M +AA+YF+G+HD+ F V++N + V+SV D+
Sbjct: 147 NIANVFERRYMYHTFHKPDVDAMNKAAQYFLGEHDYKVFSTVKKNKSTVRNVESV---DI 203
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ G L++ ++ FL+ R M+ +LL IG P+ V K+L E++K A
Sbjct: 204 YDDGDTLEITIKADDFLHNMARLMIGILLDIGSGERRPEDVRKLLDGVKGVEISK---PA 260
Query: 289 PPHGLCLVEVKY 300
+GL L+EV+Y
Sbjct: 261 ESYGLYLLEVEY 272
>gi|381335836|ref|YP_005173611.1| tRNA pseudouridine synthase A [Leuconostoc mesenteroides subsp.
mesenteroides J18]
gi|356643802|gb|AET29645.1| tRNA pseudouridine synthase A [Leuconostoc mesenteroides subsp.
mesenteroides J18]
Length = 255
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 146/259 (56%), Gaps = 13/259 (5%)
Query: 50 KWRLVIAYDGTRYAGWQFQT-----SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTG 104
+++ VIAYDG + G+Q QT S T+Q + K + ++ K +++VGASRTDTG
Sbjct: 3 RYKAVIAYDGAEFFGFQLQTKNGVESVRTVQGELNKVINKMAKNPSPQIKVVGASRTDTG 62
Query: 105 VHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYK 164
VHA+GQV HF PF+ D E + +N LLP D+ V + +FHARF+ SK Y Y+
Sbjct: 63 VHAFGQVVHFDLPFNIDP-EGVRKGMNTLLPFDVVVNHVEHVSDDFHARFNTHSKRYIYR 121
Query: 165 IYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF 224
+ DPF+R Y H +KL+ ++ A +G+HDF++F + ++ +
Sbjct: 122 VSTTDYKDPFKRKYTGHFHWKLDINRIKAALPDLLGEHDFASF--AASGNETATTIRLIT 179
Query: 225 RFDVIEMGALLQL--EVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELA 282
R DV E ++ EG+ FLY Q+R MV +LL+IG P + +++ +DR E A
Sbjct: 180 RADVDEKPEEHEIVFTFEGNAFLYNQIRIMVGVLLEIGTGKRPVHDIVRLIEVKDR-EQA 238
Query: 283 KYALSAPPHGLCLVEVKYN 301
+Y +AP GL L ++ YN
Sbjct: 239 RY--TAPASGLYLDDIDYN 255
>gi|212704912|ref|ZP_03313040.1| hypothetical protein DESPIG_02979 [Desulfovibrio piger ATCC 29098]
gi|212671683|gb|EEB32166.1| tRNA pseudouridine synthase A [Desulfovibrio piger ATCC 29098]
Length = 264
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 102/271 (37%), Positives = 143/271 (52%), Gaps = 21/271 (7%)
Query: 44 DSFPGFKWRLVIAYDGTRYAGWQFQ---TSPPTIQCIVEKALIRVTKLEREDLRLVGASR 100
D+ + RL++AYDG+RY GWQ Q T PPT+Q VE A+ R+ +R+ G+ R
Sbjct: 3 DTSSTMRLRLLLAYDGSRYCGWQIQDIPTPPPTVQAAVEAAVGRIAG---RPVRVFGSGR 59
Query: 101 TDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKI 160
TD GVHA GQVAH P GL+ H ALN LLP D+RV A P+FHAR SA K
Sbjct: 60 TDAGVHAHGQVAHCDVP-RRPGLDWRH-ALNALLPADVRVLYWQEAAPDFHARISALRKT 117
Query: 161 YHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPV 220
Y Y + + P + L+ MR A + +G+HDF++F N + + V
Sbjct: 118 YVYDFWQEKGFVPPRLAPFVWRSGPLDAEAMRAALPFLLGRHDFASFQNA--GTEMESTV 175
Query: 221 KSVFRFDVIEMGAL---------LQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPK 271
+ + + E+ + L+L V +GFL + VRNM LL G+ + PD +P
Sbjct: 176 RELQAATLTELPPVEFMPPCLPCLRLTVTANGFLKQMVRNMAGLLAAYGRHKLRPDQIPA 235
Query: 272 ILATQDRKELAKYALSAPPHGLCLVEVKYNE 302
IL DR+ L + +APP GL L V+Y +
Sbjct: 236 ILEAADRRALP--SPTAPPQGLALAHVEYPD 264
>gi|423480567|ref|ZP_17457257.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG6X1-2]
gi|401147503|gb|EJQ55005.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG6X1-2]
Length = 245
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I YDG RY GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKVTIQYDGARYKGWQRLGNNDNTIQGKIESV---ISEMIGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFKSDEKLVE-HKVKKYLNQYLPNDISITNVEEVSDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R ++ H KLN M++AA++ +G HDF+AF N + + + V+ V+ ++
Sbjct: 120 HTNPFMRKHSMHVNKKLNVKSMKEAAKHLIGSHDFTAFSNAKSKKKSM--VREVYTLEIS 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>gi|167759245|ref|ZP_02431372.1| hypothetical protein CLOSCI_01592 [Clostridium scindens ATCC 35704]
gi|167663119|gb|EDS07249.1| tRNA pseudouridine synthase A [Clostridium scindens ATCC 35704]
Length = 248
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 144/253 (56%), Gaps = 10/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ +L IAYDGT Y GWQ Q + T++ I+ K L KL ED+ ++GASRTD+GVHA G
Sbjct: 3 RIKLTIAYDGTDYCGWQIQPNGITVEEILNKKL---KKLTGEDIHVIGASRTDSGVHALG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKS-KIYHYKIYND 168
VA F T S E + ALN LP DI + ++H R+ + K Y Y IYN
Sbjct: 60 NVAVFDTESSIPA-ERMAYALNQRLPDDIVIVSSKEVPLDWHPRYQDEILKTYEYHIYNA 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
V +P +R Y+ + +N MR+ A Y +G+HDF +F NV+ + + + V++V +
Sbjct: 119 PVQNPLKRRYSAFVSFPMNVEKMREGAAYLLGEHDFVSFCNVRTS--VEDTVRTVKELMI 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ G + + + G+GFLY VR + L+++G+ P V +IL ++R + ++A
Sbjct: 177 EQEGPDITIRITGNGFLYNMVRIIAGTLIRVGRGFYEPTKVKEILEARER---TQAGVTA 233
Query: 289 PPHGLCLVEVKYN 301
PP GL LV ++Y+
Sbjct: 234 PPEGLTLVCIEYD 246
>gi|423543905|ref|ZP_17520263.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuB5-5]
gi|423626368|ref|ZP_17602145.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD148]
gi|401185609|gb|EJQ92701.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuB5-5]
gi|401252547|gb|EJR58805.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD148]
Length = 245
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 140/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG RY GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARYKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFKSDEKLVE-HKVKKYLNQYLPNDISITSVEEVPDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R ++ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +V
Sbjct: 120 HTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLEVS 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDVEAIPNILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLESVEF 245
>gi|427413186|ref|ZP_18903378.1| tRNA pseudouridine synthase A [Veillonella ratti ACS-216-V-Col6b]
gi|425716002|gb|EKU78988.1| tRNA pseudouridine synthase A [Veillonella ratti ACS-216-V-Col6b]
Length = 262
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 136/251 (54%), Gaps = 9/251 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
RL++AYDGT G+Q Q + T+Q +E AL TK+ E + + GASRTD GVHA QV
Sbjct: 9 RLIVAYDGTELNGYQSQVNGITVQDCLEAAL---TKVCNEPISIYGASRTDAGVHARFQV 65
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
F T S E++ AL LPP I +R+ ++ R+ K Y Y I+ND +
Sbjct: 66 VTFFTTGSIPA-ENLTRALIAHLPPFIVIRKAEEIPLDWRPRWRIVGKEYIYTIHNDVIE 124
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
DP Y +H LN M +AA+ G HDF+ N NPVK++F + +
Sbjct: 125 DPISMRYHWHVKKPLNRAAMMEAAKALEGTHDFTTLQGA--NSTPANPVKTMFAVTLRFI 182
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G + + V G GFLY VRN+ LL+ +G P VP ++A +DR+ + K +APP
Sbjct: 183 GPTVYIHVIGDGFLYHMVRNIAGLLVDVGLGRFAPSQVPDLIAARDRRVIGK---TAPPQ 239
Query: 292 GLCLVEVKYNE 302
GLCL E+ +NE
Sbjct: 240 GLCLEEIFFNE 250
>gi|291562779|emb|CBL41595.1| pseudouridylate synthase I [butyrate-producing bacterium SS3/4]
Length = 255
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/260 (39%), Positives = 145/260 (55%), Gaps = 22/260 (8%)
Query: 52 RLVIAYDGTRYAGWQFQ-TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
R+ + YDG+RY GWQ Q + TIQ +E L R+ E++ + G+ RTD GVHA GQ
Sbjct: 6 RITLEYDGSRYDGWQKQGNTDNTIQGKLENVLFRMAG---EEIEVHGSGRTDAGVHARGQ 62
Query: 111 VAHF-----ITPFSYDGLESIHAALNGLLPPDIRVREISAA-VPE-FHARFSAKSKIYHY 163
VA+F I P DG E+ LN LP DIRV +SA VPE FH+R SA SK Y Y
Sbjct: 63 VANFHINAEICP---DG-EAAREYLNRYLPDDIRV--LSAKIVPERFHSRLSATSKTYGY 116
Query: 164 KIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSV 223
+ + F+R Y Y KL+ MRQAAE+ +G+HDF +F +R + + V+ +
Sbjct: 117 YVETGDKKNVFERKYVYGCGKKLDVKAMRQAAEFLIGEHDFKSFCANRRMKK--STVRRI 174
Query: 224 FRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAK 283
++E G L+ G+GFLY VR + LL++G P+ + +I+A ++R +
Sbjct: 175 DEIRIVEHGTKLEFLYTGNGFLYNMVRILTGTLLEVGSGTRRPEKMKEIIAAKNRDMAGR 234
Query: 284 YALSAPPHGLCLVEVKYNEE 303
+APP GL L+ V Y E
Sbjct: 235 ---TAPPEGLFLLHVGYEGE 251
>gi|417937508|ref|ZP_12580808.1| tRNA pseudouridine synthase A [Streptococcus infantis SK970]
gi|343391772|gb|EGV04345.1| tRNA pseudouridine synthase A [Streptococcus infantis SK970]
Length = 249
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 141/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L ++ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTKLNK--GQAITIHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVVHFDLPYQMDE-EKLRFALDTQSPEDIDVISIEIVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M+ A + G HDF+ F D++ +++ R D
Sbjct: 120 PKNPMRRHYATHYPYPLDVKRMQLALKKLEGTHDFTGFTASGTSVEDKVRTIMEASLRVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPIEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|345858432|ref|ZP_08810825.1| tRNA pseudouridine synthase A [Desulfosporosinus sp. OT]
gi|344328451|gb|EGW39836.1| tRNA pseudouridine synthase A [Desulfosporosinus sp. OT]
Length = 263
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/254 (39%), Positives = 139/254 (54%), Gaps = 11/254 (4%)
Query: 52 RLVIAYDGTRYAGWQFQ--TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
RL +AYDGT Y G+Q Q T PTIQ +E KL E++ L A RTD GVHA G
Sbjct: 5 RLTVAYDGTNYHGFQRQDQTYGPTIQGTLEAVW---KKLVEEEVTLATAGRTDAGVHASG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV +F+T E I A N LLP DIR+ + + +F+AR+SAK K Y Y+I N
Sbjct: 62 QVVNFMTAARIPE-EKIPKAFNSLLPRDIRILQAESVPHDFNARWSAKWKRYDYQIDNHR 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ + F R YA H LN M+ AA F G H+F F + ++++R V
Sbjct: 121 IPNVFLRLYASHVPIPLNVNQMQAAASLFEGHHNFKTFAAAGGASKTFE--RTIYRCQVK 178
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E ++++ G+GFLY VR MV L+ +GK I +P+I+A+Q+RK + + AP
Sbjct: 179 EDKGIIRVSCVGNGFLYHMVRIMVGTLMDVGKGRILSQEIPEIIASQERK---RARIIAP 235
Query: 290 PHGLCLVEVKYNEE 303
HGL L V Y E+
Sbjct: 236 AHGLTLAYVNYTEQ 249
>gi|385262986|ref|ZP_10041083.1| tRNA pseudouridine(38-40) synthase [Streptococcus sp. SK643]
gi|385188961|gb|EIF36431.1| tRNA pseudouridine(38-40) synthase [Streptococcus sp. SK643]
Length = 249
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/255 (37%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GKAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIEIVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRN--DRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M+ A + G HDF+ F N D++ ++ R D
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQMAIKMLEGTHDFTGFTASGTNVEDKVRTITEASLRVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E+ Y E
Sbjct: 235 AAPNGLYLKEITYEE 249
>gi|225388793|ref|ZP_03758517.1| hypothetical protein CLOSTASPAR_02531 [Clostridium asparagiforme
DSM 15981]
gi|225045068|gb|EEG55314.1| hypothetical protein CLOSTASPAR_02531 [Clostridium asparagiforme
DSM 15981]
Length = 250
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/258 (37%), Positives = 144/258 (55%), Gaps = 12/258 (4%)
Query: 49 FKWRLVIAYDGTRYAGWQFQ-TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHA 107
+++++ YDGTRY GWQ Q + TIQ +E L R L E L + G+ RTD GVHA
Sbjct: 1 MNYKMILQYDGTRYDGWQRQGNTDRTIQGKLEAVLGR---LAEETLEVHGSGRTDGGVHA 57
Query: 108 WGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
GQVA+F + + E I A LN LP DI V E++AA FH+R +A K Y Y+I+
Sbjct: 58 RGQVANFHLKQAREP-EEIRAYLNRYLPEDICVLELTAAPERFHSRLNACRKTYRYQIWM 116
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
D D FQR Y Y +L+ M +AA +G HDF +F ++ + + V+++
Sbjct: 117 DGKTDVFQRDYFYGLGKQLDIGQMERAAGTLLGTHDFKSFCGNKKMKK--STVRTITAIR 174
Query: 228 VIEM--GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
+I + G L ++V G+GFL + VR + L+++G D + +L + KE +
Sbjct: 175 LIRLCDGKALAVDVTGNGFLQQMVRILAGTLIEVGLGKREADSLEAVL---ELKERSAAG 231
Query: 286 LSAPPHGLCLVEVKYNEE 303
+APP GLCL+ V+Y EE
Sbjct: 232 FTAPPEGLCLMNVQYEEE 249
>gi|310659467|ref|YP_003937188.1| tRNA pseudouridine synthase A 1 (tRNA-uridine isomerase I 1) (tRNA
pseudouridylate synthase I 1) [[Clostridium]
sticklandii]
gi|308826245|emb|CBH22283.1| tRNA pseudouridine synthase A 1 (tRNA-uridine isomerase I 1) (tRNA
pseudouridylate synthase I 1) [[Clostridium]
sticklandii]
Length = 249
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 141/249 (56%), Gaps = 10/249 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
++I YDGT Y GWQ Q + ++Q +EKA+ +VTK + + + G+ RTD VHA GQVA
Sbjct: 6 ILIEYDGTNYNGWQRQPNAASVQEEIEKAIYKVTKKQTD---IYGSGRTDAKVHALGQVA 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T S E ALN LP DI + EFH+R+SAK K Y Y++ N V
Sbjct: 63 NFHTD-SAIPTEKFAVALNTNLPDDIVILNSIEVPEEFHSRYSAKVKTYRYRVLNTPVRR 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P +R+YAYH L+ +++ A+ +G+HDF AF + + +++++ + +
Sbjct: 122 PIERNYAYHVREDLDLDIIKTMAKLLIGEHDFKAFSS--SGSSVKTTIRTIYDIKITKEN 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+++ E G+GFLY VR +V L+++GK++ DI + L T DR +APP G
Sbjct: 180 DIIEFEFTGNGFLYNMVRIIVGTLIELGKKSTRYDI-QRALMTGDR---GFAGPTAPPQG 235
Query: 293 LCLVEVKYN 301
L L +V YN
Sbjct: 236 LFLKKVSYN 244
>gi|225872353|ref|YP_002753808.1| tRNA pseudouridine synthase A [Acidobacterium capsulatum ATCC
51196]
gi|225793375|gb|ACO33465.1| tRNA pseudouridine synthase A [Acidobacterium capsulatum ATCC
51196]
Length = 254
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/259 (37%), Positives = 135/259 (52%), Gaps = 14/259 (5%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
W+L +AYDGT Y GWQ Q PTIQ + A+ R+T E + G+ RTD GVHA
Sbjct: 3 LNWKLTLAYDGTDYRGWQVQPELPTIQGELAAAVERITG---ERVLPQGSGRTDAGVHAL 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQVA F+ E++H ALN LP IRV + +FHAR SA+SK Y Y+I+
Sbjct: 60 GQVASFVLKAPIPA-ENLHRALNRTLPAAIRVLGAESMPEDFHARHSARSKWYEYRIFRG 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQ-------RNDRLLNPVK 221
V P+ Y Y + L+ MR+AA FVG+HDF +F D + V+
Sbjct: 119 EVCPPWTARYVYALHWPLDVEAMRRAAAAFVGEHDFRSFAASDPDVAARGSEDAEESHVR 178
Query: 222 SVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKEL 281
++F E LL V G+GFL+ VRN+V ++ +G+ + +P +LA +DR
Sbjct: 179 TIFASGWAEEDDLLIYRVHGNGFLHHMVRNLVGTMIGVGRRQFDAEDMPGLLALRDRSAA 238
Query: 282 AKYALSAPPHGLCLVEVKY 300
+AP GL L V Y
Sbjct: 239 GA---TAPARGLFLYSVCY 254
>gi|404495464|ref|YP_006719570.1| tRNA pseudouridine synthase A [Geobacter metallireducens GS-15]
gi|418068143|ref|ZP_12705458.1| tRNA pseudouridine synthase A [Geobacter metallireducens RCH3]
gi|373557514|gb|EHP83923.1| tRNA pseudouridine synthase A [Geobacter metallireducens RCH3]
gi|403377973|gb|ABB30848.2| tRNA pseudouridines 38,39,40 synthase [Geobacter metallireducens
GS-15]
Length = 244
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/253 (39%), Positives = 138/253 (54%), Gaps = 17/253 (6%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+LV+ YDGT YAGWQ Q + ++Q +VE+AL R+ K E +R+ + RTD GVHA G V
Sbjct: 5 KLVLEYDGTNYAGWQIQPNGISVQQVVEEALARLLK---EPVRVHSSGRTDAGVHARGMV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T + + LN LLPPDI V E A F+ RF A K Y Y I+
Sbjct: 62 AAFTTAKGLP-MRAFSDGLNALLPPDIAVMEALEAPDGFNPRFDAAGKHYRYTIHRGERR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P RHY +H+ L+ M + A + VG+HDF++F R +V R D +++
Sbjct: 121 SPLCRHYVWHARETLDLAAMEKGASHMVGEHDFASFRTAGCAAR-----TTVRRIDAVDL 175
Query: 232 ---GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL-S 287
G LL ++V+GSGFL VR MV L+++G+ D V + R ++A +
Sbjct: 176 ALEGDLLHIDVKGSGFLRNMVRIMVGTLVEVGRGRRSADDVALLF----RYPGERFAGPT 231
Query: 288 APPHGLCLVEVKY 300
APP GLCL+EV Y
Sbjct: 232 APPQGLCLMEVYY 244
>gi|295398321|ref|ZP_06808363.1| tRNA pseudouridine synthase A [Aerococcus viridans ATCC 11563]
gi|294973460|gb|EFG49245.1| tRNA pseudouridine synthase A [Aerococcus viridans ATCC 11563]
Length = 285
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 139/253 (54%), Gaps = 10/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ + YDGT + G+Q Q + T+Q +EKAL ++K D+++VG+ RTD+GVHA G
Sbjct: 3 RFKVTLQYDGTPFVGFQVQPNGHTVQEALEKALKLMSK--GHDIQVVGSGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P G E++ A+N +L IR+ ++ +FHARF K Y YK+
Sbjct: 61 QVIHFDYPAEI-GEEAVLRAMNSILDDAIRITKVERVEDDFHARFHTNGKKYIYKVDTSK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
PF R Y YH Y+ + T M+ A + +G HDF +F + + + N V+ ++R +V
Sbjct: 120 FPSPFTRQYMYHHPYRTDVTRMQTALKDIIGVHDFKSFCSTKTDK--TNFVREIYRAEVT 177
Query: 230 E--MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
L EGSGFLY VR +V LQIG P D + +++ +DR E +
Sbjct: 178 ADPDAETLTFVFEGSGFLYNMVRILVGTTLQIGDGLRPVDEMKRLITAEDRNEAGP---T 234
Query: 288 APPHGLCLVEVKY 300
A HGL L EV Y
Sbjct: 235 AAAHGLYLAEVYY 247
>gi|422423328|ref|ZP_16500281.1| tRNA pseudouridine synthase A [Listeria seeligeri FSL S4-171]
gi|313636153|gb|EFS02014.1| tRNA pseudouridine synthase A [Listeria seeligeri FSL S4-171]
Length = 248
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 142/253 (56%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG+ + G+Q Q + T+Q +EKAL ++ K + +R+ + RTDTGVHA G
Sbjct: 3 RFKAIISYDGSGFYGYQVQPNTRTVQAEIEKALKKMHK--GKSVRVTASGRTDTGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + E AL + P DI + A +FHARF K Y Y +
Sbjct: 61 QVIHFDSELDISA-EKFQKALQVMTPFDISFLIVEEAPADFHARFGTVGKEYRYVVKRTK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
V DPF R++A H Y+LN M+ A+E VG+HDF++F + R +R + V++++ D
Sbjct: 120 VFDPFSRNFALHYPYELNLEKMKLASERLVGEHDFTSFCSA-RTER-DSKVRTLYSIDFY 177
Query: 230 EM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E L + +G+GFLY VR + LL G+ I PD + K L +DR++L + +A
Sbjct: 178 EEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDITKALLARDRQKLI--SKTA 235
Query: 289 PPHGLCLVEVKYN 301
PP GL L V Y
Sbjct: 236 PPQGLYLWRVDYE 248
>gi|403238438|ref|ZP_10917024.1| tRNA pseudouridine synthase A [Bacillus sp. 10403023]
Length = 256
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 142/253 (56%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDGT ++G+Q Q + T+Q E AL ++ K E + +V + RTD VHA G
Sbjct: 3 RYKCIISYDGTHFSGYQVQPNKRTVQSEFETALQKMHK--GEPVSIVASGRTDAKVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + S +E ALN LLP DI VR + +FHARF K+K Y Y++
Sbjct: 61 QVIHFDSRISIP-VEGWKRALNSLLPNDISVRSVEMVALDFHARFDVKAKEYRYRLLVSK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
F+RHY Y+ Y LN MR+A++Y +G +DF++F + + + V+++++ +
Sbjct: 120 EPCVFKRHYTYYYPYPLNLAAMREASDYLIGTYDFTSFCASK--TEVQDKVRTIYQIKIE 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ L G+GFLY VR +V LL++G ++ IL+ +DR K +AP
Sbjct: 178 KHEDELIFSFVGNGFLYNMVRILVGTLLEVGSGQREARMIENILSGKDRSLAGK---TAP 234
Query: 290 PHGLCLVEVKYNE 302
GLCL +V Y E
Sbjct: 235 GQGLCLWQVFYEE 247
>gi|419817507|ref|ZP_14341665.1| tRNA pseudouridine synthase A [Streptococcus sp. GMD4S]
gi|404465842|gb|EKA11228.1| tRNA pseudouridine synthase A [Streptococcus sp. GMD4S]
Length = 249
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 141/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG ++G+Q Q ++Q +EK L+R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYAFSGFQRQPHARSVQEEIEKTLMRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D +E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMD-VEKLRFALDTQSPEDIDVISIKLVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M+ A + G HDF+ F D++ ++ D
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQIAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLSVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DRK LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRK-LA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|326792573|ref|YP_004310394.1| tRNA pseudouridine synthase A [Clostridium lentocellum DSM 5427]
gi|326543337|gb|ADZ85196.1| tRNA pseudouridine synthase A [Clostridium lentocellum DSM 5427]
Length = 245
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 142/252 (56%), Gaps = 9/252 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++L++AYDGT Y G+ Q + TIQ ++ A+ ++ + E +R +GA RTD GVHA+
Sbjct: 3 RFKLIVAYDGTNYNGFAKQPNATTIQGTLDVAIAKIVQHE---VRTLGAGRTDRGVHAFA 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
Q F + + + A+N LP DI V+ + +FH RF AK K Y Y+I N
Sbjct: 60 QCCVFDSDTKIPA-DRLAKAINSQLPADISVKSVEEVSEDFHPRFGAKRKTYRYQILNAK 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ DPF YA Y+L+ M++AA +G+HDF+ F + + V+ ++ DV
Sbjct: 119 IRDPFLYKYALLYPYELDVERMQEAANEMIGEHDFACFCAA--GSTVKDTVRIIYSIDVK 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G L+ ++V G+GFLY VR ++ LL + + I D + I+ +++R ELA + P
Sbjct: 177 KEGDLVSIDVCGNGFLYNMVRIIIGTLLDVNENKITKDSIKTIIESKNR-ELA--GPTVP 233
Query: 290 PHGLCLVEVKYN 301
P GL ++ + YN
Sbjct: 234 PQGLTMLNIVYN 245
>gi|260589149|ref|ZP_05855062.1| tRNA pseudouridine synthase A [Blautia hansenii DSM 20583]
gi|331082565|ref|ZP_08331690.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 6_1_63FAA]
gi|260540569|gb|EEX21138.1| tRNA pseudouridine synthase A [Blautia hansenii DSM 20583]
gi|330400543|gb|EGG80173.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 6_1_63FAA]
Length = 245
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 136/251 (54%), Gaps = 9/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ +L +AYDGT Y GWQ Q + T+Q ++ + L T E++ +GASRTD GVHA G
Sbjct: 3 RVKLTVAYDGTNYCGWQVQPNGITVQEVLNQCLSEFTG---ENIETIGASRTDAGVHALG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
VA F T G + ALN LP DIR+++ +FH R+ K Y Y+I N
Sbjct: 60 NVAVFDTEMRMPG-DKFSFALNQRLPEDIRIQKSEEVDADFHPRYVKSQKTYEYRILNCR 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
P +R Y++ + L+ M++AA Y +G+HDF +F ++ V++V +
Sbjct: 119 FPIPTERFYSHFTYIPLDVDKMKEAASYLIGEHDFKSFCGT--GAQVKTTVRTVKEIQIE 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G + + + G GFLY VR + L+ IG PP+ + +IL +DRK K +AP
Sbjct: 177 KSGDRITIRITGEGFLYNMVRIIAGTLMDIGGGLYPPEKMKEILEAKDRK---KAGPTAP 233
Query: 290 PHGLCLVEVKY 300
GL L++++Y
Sbjct: 234 ARGLTLMKIQY 244
>gi|323703112|ref|ZP_08114766.1| tRNA pseudouridine synthase A [Desulfotomaculum nigrificans DSM
574]
gi|333923190|ref|YP_004496770.1| tRNA pseudouridine synthase A [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|323531889|gb|EGB21774.1| tRNA pseudouridine synthase A [Desulfotomaculum nigrificans DSM
574]
gi|333748751|gb|AEF93858.1| tRNA pseudouridine synthase A [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 245
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 144/250 (57%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDG+RY GWQ + TIQ +E L R+T E++ + G+ RTDTGVHA Q
Sbjct: 5 KLTIQYDGSRYRGWQRLGDTDVTIQGKIEAVLSRMTG---EEIEIFGSGRTDTGVHALAQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T + E I L LP DI V + FHAR++ KSK Y YKI+N
Sbjct: 62 VANFKTNSNMSTGE-IMDYLYHYLPEDIVVTRVEEVSDRFHARYNVKSKKYLYKIWNHKY 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
DPF+R + +H L M++AA + +G+HDF++F + + VK+++ D+++
Sbjct: 121 HDPFRRKFVHHVPEPLQIKAMQKAAAFLIGEHDFASFRASKSK--KKSSVKTIYAIDIVK 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
L+++ V G+GFL+ VR +V L+++G + P+ V +IL+ +DR +AP
Sbjct: 179 KDPLIKITVHGNGFLHNMVRIIVGTLVEVGLGHMRPEQVKEILSKKDRSAAGP---TAPA 235
Query: 291 HGLCLVEVKY 300
GL L+EV+Y
Sbjct: 236 KGLYLLEVEY 245
>gi|253682551|ref|ZP_04863348.1| tRNA pseudouridine synthase A [Clostridium botulinum D str. 1873]
gi|253562263|gb|EES91715.1| tRNA pseudouridine synthase A [Clostridium botulinum D str. 1873]
Length = 246
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 138/249 (55%), Gaps = 8/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+I YDG+ Y+GWQ Q T+Q VE+A+ +TK + E ++G SRTD GVHA V
Sbjct: 6 KLIIEYDGSNYSGWQKQKHSITVQQKVEEAISEITKTDTE---IIGCSRTDAGVHARNFV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+FIT S A+N LP DI +++ S +FHARF +K K Y Y I N
Sbjct: 63 ANFITESSVPP-SKFKYAINSKLPKDIVIKKSSEVPLDFHARFHSKGKKYVYTILNREEP 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
R+ YH L+ M+ A++YF+G H+F +F + + + +++++ DV +
Sbjct: 122 PTIDRNVMYHFNKDLDVNAMKMASKYFIGSHEFDSFYK-KSGSSVKSTLRTIYYCDVTKC 180
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
+++ V G GFLY VR M L++ G I P+ + I+ +DR++ + S PP
Sbjct: 181 EDVIKFTVIGEGFLYNMVRIMAGTLIEAGIGRIRPEDIKAIILAKDREKAGR---SLPPQ 237
Query: 292 GLCLVEVKY 300
GLCL EV Y
Sbjct: 238 GLCLQEVLY 246
>gi|166030569|ref|ZP_02233398.1| hypothetical protein DORFOR_00232 [Dorea formicigenerans ATCC
27755]
gi|346308968|ref|ZP_08851072.1| tRNA pseudouridine synthase A [Dorea formicigenerans 4_6_53AFAA]
gi|166029571|gb|EDR48328.1| tRNA pseudouridine synthase A [Dorea formicigenerans ATCC 27755]
gi|345901517|gb|EGX71316.1| tRNA pseudouridine synthase A [Dorea formicigenerans 4_6_53AFAA]
Length = 244
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 141/251 (56%), Gaps = 11/251 (4%)
Query: 51 WRLVIAYDGTRYAGWQFQ-TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I+YDGTRY GWQ Q T+ TIQ I+E + + KL +R+ G+ RTD GVHA G
Sbjct: 4 YKLTISYDGTRYQGWQRQATTDNTIQHILEWS---IGKLVGYRVRVDGSGRTDAGVHARG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA YD ++ + ++N LP DIR+ ++ FHAR SAK K Y Y I
Sbjct: 61 QVASVQLSKLYD-VKELKDSINRYLPEDIRIMKVELMKNGFHARKSAKGKKYEYYIDCRE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
D F R Y YH +KL+ MR+AA+Y +G +F++F + N +PV+ V ++
Sbjct: 120 KPDVFSRRYCYHYPHKLDIEAMREAADYMIGPKNFTSFTDDSENK---DPVRRVTNIKIV 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
G L++ G+GF+Y VR M LL++G ++P ++A +DR LA + AP
Sbjct: 177 SNGEKLRITYYGTGFMYHMVRIMTGTLLEVGTGEREASMIPVVIAAEDR-SLAGFL--AP 233
Query: 290 PHGLCLVEVKY 300
GL L +V Y
Sbjct: 234 ARGLFLRKVYY 244
>gi|336422160|ref|ZP_08602312.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 5_1_57FAA]
gi|336009070|gb|EGN39068.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 5_1_57FAA]
Length = 248
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 144/253 (56%), Gaps = 10/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ +L IAYDGT Y GWQ Q + T++ ++ K L KL ED+ ++GASRTD+GVHA G
Sbjct: 3 RIKLTIAYDGTDYCGWQIQPNGITVEEVLNKKL---KKLTGEDIHVIGASRTDSGVHALG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKS-KIYHYKIYND 168
VA F T S E + ALN LP DI + ++H R+ + K Y Y IYN
Sbjct: 60 NVAVFDTESSIPA-ERMAYALNQRLPDDIVIVSSKEVPLDWHPRYQDEILKTYEYHIYNA 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
V +P +R Y+ + +N MR+ A Y +G+HDF +F NV+ + + + V++V +
Sbjct: 119 PVQNPLKRRYSAFVSFPMNVEKMREGAAYLLGEHDFVSFCNVRTS--VEDTVRTVKELMI 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ G + + + G+GFLY VR + L+++G+ P V +IL ++R + ++A
Sbjct: 177 EQEGPDITIRITGNGFLYNMVRIIAGTLIRVGRGFYEPTKVKEILEARER---TQAGVTA 233
Query: 289 PPHGLCLVEVKYN 301
PP GL LV ++Y+
Sbjct: 234 PPEGLTLVCIEYD 246
>gi|289435864|ref|YP_003465736.1| tRNA pseudouridine synthase A [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289172108|emb|CBH28654.1| tRNA pseudouridine synthase A [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 248
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 141/253 (55%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG+ + G+Q Q T+Q +EKAL ++ K + +R+ + RTDTGVHA G
Sbjct: 3 RYKAIISYDGSGFYGYQVQPDTRTVQAEIEKALKKMHK--GKSVRVTASGRTDTGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + E AL + P DI + A +FHARF K Y Y +
Sbjct: 61 QVIHFDSELDISA-EKFQKALQVMTPFDISFLIVEEAPADFHARFGTVGKEYRYVVKRTK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
V DPF R++A H Y+LN M+ A+E VG+HDF++F + R +R + V++++ D
Sbjct: 120 VFDPFSRNFALHYPYELNLEKMKLASERLVGEHDFTSFCSA-RTER-DSKVRTLYSIDFY 177
Query: 230 -EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E L + +G+GFLY VR + LL G+ I PD + K L +DR++L + +A
Sbjct: 178 EEEDDTLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDITKALLARDRQKLI--SKTA 235
Query: 289 PPHGLCLVEVKYN 301
PP GL L V Y
Sbjct: 236 PPQGLYLWRVDYE 248
>gi|358464303|ref|ZP_09174268.1| tRNA pseudouridine synthase A [Streptococcus sp. oral taxon 058
str. F0407]
gi|357067069|gb|EHI77199.1| tRNA pseudouridine synthase A [Streptococcus sp. oral taxon 058
str. F0407]
Length = 261
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 140/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 15 RYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GQAVTIHGAGRTDSGVHALG 72
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + + +
Sbjct: 73 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRER 131
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M+ A + G HDF+ F D++ ++ D
Sbjct: 132 PKNPMRRHYATHFPYPLDVERMQMAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLTVD 191
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 192 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 246
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 247 AAPNGLYLKEIRYEE 261
>gi|167767146|ref|ZP_02439199.1| hypothetical protein CLOSS21_01665 [Clostridium sp. SS2/1]
gi|167711121|gb|EDS21700.1| tRNA pseudouridine synthase A [Clostridium sp. SS2/1]
gi|291559527|emb|CBL38327.1| pseudouridylate synthase I [butyrate-producing bacterium SSC/2]
Length = 248
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 140/252 (55%), Gaps = 12/252 (4%)
Query: 52 RLVIAYDGTRYAGWQ---FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
RL I YDG+RY GWQ ++ TIQ +E L +K+ ED+ + G+ RTD GVHA+
Sbjct: 6 RLTIEYDGSRYQGWQRLGGDSNANTIQGKLESVL---SKMTGEDVNINGSGRTDAGVHAY 62
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQVA+F T + I L LP DI + E+S A FH+R +AK K Y Y+I
Sbjct: 63 GQVANFHTDCMMS-VSEIKNYLTKYLPSDIGIVEVSEASERFHSRLNAKEKTYLYRIAIP 121
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
V + F+R Y ++ L+ M +AA +G HDF F ++++ + + V++++ ++
Sbjct: 122 GVSNVFERKYLWYFPETLDIKKMEEAASLLIGTHDFKGFSSIKKTKK--STVRTIYNIEI 179
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ +Q+ G+GFL+ VR + L+++G I P+ + K L + R + ++A
Sbjct: 180 KKTKKEIQISYTGNGFLHNMVRILTGTLVEVGCGKIKPEDITKALESTKRSDA---GITA 236
Query: 289 PPHGLCLVEVKY 300
PP GL LV V+Y
Sbjct: 237 PPQGLFLVSVEY 248
>gi|416353175|ref|ZP_11681473.1| tRNA pseudouridine synthase A [Clostridium botulinum C str.
Stockholm]
gi|338195618|gb|EGO87876.1| tRNA pseudouridine synthase A [Clostridium botulinum C str.
Stockholm]
Length = 246
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 138/249 (55%), Gaps = 8/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+I YDG+ Y+GWQ Q T+Q +E+A+ +TK + E ++G SRTD GVHA V
Sbjct: 6 KLIIEYDGSNYSGWQKQKHSITVQQKIEEAISEITKTDTE---IIGCSRTDAGVHARNFV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+FIT S A+N LP DI +++ S +FHARF +K K Y Y I N
Sbjct: 63 ANFITESSVPP-SKFKYAINSKLPKDIVIKKSSEVPLDFHARFHSKGKKYVYTILNREEP 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
R+ YH L+ M+ A++YF+G H+F +F + + + +++++ DV +
Sbjct: 122 PTIDRNVVYHFNKDLDVNAMKMASKYFIGSHEFDSFYK-KSGSSVKSTLRTIYYCDVTKC 180
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
+++ V G GFLY VR M L++ G I P+ + I+ +DR++ + S PP
Sbjct: 181 EDVIKFTVIGEGFLYNMVRIMAGTLIEAGIGRIIPEDIKAIILAKDREKAGR---SLPPQ 237
Query: 292 GLCLVEVKY 300
GLCL EV Y
Sbjct: 238 GLCLQEVLY 246
>gi|307705317|ref|ZP_07642179.1| tRNA pseudouridine synthase A [Streptococcus mitis SK597]
gi|307621104|gb|EFO00179.1| tRNA pseudouridine synthase A [Streptococcus mitis SK597]
Length = 249
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 140/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRN--DRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M+ A + G HDF+ F N D++ ++ R D
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQMAIKKLEGTHDFTGFTASGTNVEDKIRTITEASLRVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG + +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E++Y E
Sbjct: 235 AASNGLYLKEIRYEE 249
>gi|429762013|ref|ZP_19294420.1| tRNA pseudouridine synthase A [Anaerostipes hadrus DSM 3319]
gi|429182559|gb|EKY23657.1| tRNA pseudouridine synthase A [Anaerostipes hadrus DSM 3319]
Length = 248
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 140/252 (55%), Gaps = 12/252 (4%)
Query: 52 RLVIAYDGTRYAGWQ---FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
RL I YDG+RY GWQ ++ TIQ +E L +K+ ED+ + G+ RTD GVHA+
Sbjct: 6 RLTIEYDGSRYQGWQRLGGDSNANTIQGKLESVL---SKMTGEDVNINGSGRTDAGVHAY 62
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQVA+F T + I L LP DI + E+S A FH+R +AK K Y Y+I
Sbjct: 63 GQVANFHTNCMMS-VSEIKNYLTKYLPSDIGIVEVSEASERFHSRLNAKEKTYLYRIAIP 121
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
V + F+R Y ++ L+ M +AA +G HDF F ++++ + + V++++ ++
Sbjct: 122 GVSNVFERKYLWYFPETLDIKKMEEAASLLIGTHDFKGFSSIKKTKK--STVRTIYNIEI 179
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ +Q+ G+GFL+ VR + L+++G I P+ + K L + R + ++A
Sbjct: 180 KKTKKEIQISYTGNGFLHNMVRILTGTLVEVGCGKIKPEDITKALESTKRSDA---GITA 236
Query: 289 PPHGLCLVEVKY 300
PP GL LV V+Y
Sbjct: 237 PPQGLFLVSVEY 248
>gi|417850250|ref|ZP_12496161.1| tRNA pseudouridine synthase A [Streptococcus mitis SK1080]
gi|339452932|gb|EGP65550.1| tRNA pseudouridine synthase A [Streptococcus mitis SK1080]
Length = 249
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GKAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + L+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFVLDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M++A + G HDF+ F D++ ++ R D
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQEAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLRVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|374709914|ref|ZP_09714348.1| tRNA pseudouridine synthase A [Sporolactobacillus inulinus CASD]
Length = 246
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/252 (38%), Positives = 136/252 (53%), Gaps = 9/252 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
K + +AYDG+++ G+Q Q T+Q ++ AL R+ +++V + RTD GVHA+G
Sbjct: 3 KIKCTVAYDGSQFHGYQVQPQKRTVQREIQNALARMH--HGSTIKIVASGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF +P LE ALN LLP DI VR A FHAR+ K K Y Y++
Sbjct: 61 QVFHFESPLKIP-LERWPRALNSLLPGDIYVRHAEAVPETFHARYDVKQKEYRYRLLTRP 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
D F+R Y H L+ M QAAE +G HDFS F N + + V++VF V
Sbjct: 120 EPDLFRRAYTAHVAQPLDLEAMNQAAEAIIGTHDFSCFCAA--NTDVKDKVRTVFHLSVS 177
Query: 230 -EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E + V GSGFLY+ VR + LL +GK + P+ + +I+A DR+ + +A
Sbjct: 178 REKDDETVIRVVGSGFLYQMVRIITGTLLDVGKHQMAPERIAEIIAGGDRQAASA---TA 234
Query: 289 PPHGLCLVEVKY 300
PP GL L +V Y
Sbjct: 235 PPQGLTLWKVTY 246
>gi|326692205|ref|ZP_08229210.1| tRNA pseudouridine synthase A [Leuconostoc argentinum KCTC 3773]
Length = 261
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 151/261 (57%), Gaps = 15/261 (5%)
Query: 50 KWRLVIAYDGTRYAGWQFQTS-----PPTIQCIVEKALIRVTKLEREDLRLVGASRTDTG 104
+++ V+AYDG+ + G+Q QT T+Q + +A+ ++ KL +++VGASRTDTG
Sbjct: 3 RYKAVVAYDGSEFFGFQVQTKNGVERQRTVQGELNRAVNQMAKLPTPAIKVVGASRTDTG 62
Query: 105 VHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYK 164
VHA+GQV HF PF E + LN LLP DI ++++ +FHARF+ +K Y Y+
Sbjct: 63 VHAFGQVVHFDLPFDIQP-EGVRKGLNTLLPRDIMIKQVEKVADDFHARFNTHAKRYIYR 121
Query: 165 IYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF 224
+ DPF+R Y H ++L+ ++ A +G+HDF++F ++ V+++
Sbjct: 122 VSTQDFTDPFKRRYTGHFHWRLDVARIQAALPDLLGEHDFASF--AASGNQTATTVRTIT 179
Query: 225 RFDVIEMG---ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKEL 281
R DV E+ L EG+ FLY Q+R MV +LL+IG + +++A +DR E
Sbjct: 180 RADV-EVKPDEQELVFTFEGNAFLYNQIRIMVGVLLEIGNGRRDVHDIVRLIAVKDR-EQ 237
Query: 282 AKYALSAPPHGLCLVEVKYNE 302
A++ +AP GL L E+ Y+E
Sbjct: 238 ARF--TAPASGLYLDEIYYDE 256
>gi|307706977|ref|ZP_07643775.1| tRNA pseudouridine synthase A [Streptococcus mitis SK321]
gi|307617638|gb|EFN96807.1| tRNA pseudouridine synthase A [Streptococcus mitis SK321]
Length = 249
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVVSIELVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M+ A + G HDF+ F D++ ++ R D
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLRVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIELILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|146296772|ref|YP_001180543.1| tRNA pseudouridine synthase A [Caldicellulosiruptor saccharolyticus
DSM 8903]
gi|166228689|sp|A4XKB7.1|TRUA_CALS8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|145410348|gb|ABP67352.1| tRNA pseudouridine synthase A [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 244
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 137/248 (55%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I YDGT Y GWQ Q + T+Q ++E A+ ++T ED+ LVG+ RTD GVHA GQ A
Sbjct: 6 LTIEYDGTNYFGWQKQPNKKTVQGVIEDAIKKITG---EDVNLVGSGRTDRGVHALGQKA 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T S E ALN +LP DI +++ + +F AR+SAK K Y Y IYN
Sbjct: 63 NFKTE-SKIPTEKFPLALNSVLPNDISIKDAAEVSLDFSARYSAKQKTYKYLIYNHKFRP 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
+Y YH Y+L+ M+++ EYF+G++DFS+F + + V+ +F +
Sbjct: 122 AILCNYVYHFPYELDLVSMQKSCEYFIGEYDFSSFCSSGSETN--SKVRRIFDCYLTFEN 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ + + +GFLY R + +L +G P +P I+ ++DR + K + PP G
Sbjct: 180 DCIAIYITANGFLYNMARIIAGTILDVGVGRFKPTDIPLIIESKDRTKAGK---TLPPWG 236
Query: 293 LCLVEVKY 300
L LV+V Y
Sbjct: 237 LYLVDVVY 244
>gi|317126894|ref|YP_004093176.1| tRNA pseudouridine synthase A [Bacillus cellulosilyticus DSM 2522]
gi|315471842|gb|ADU28445.1| tRNA pseudouridine synthase A [Bacillus cellulosilyticus DSM 2522]
Length = 260
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/254 (37%), Positives = 144/254 (56%), Gaps = 8/254 (3%)
Query: 54 VIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAH 113
++ YDGT+Y+G+Q Q TIQ +EKAL ++ K + +V + RTDTGVH+ GQ H
Sbjct: 7 IVTYDGTKYSGYQVQVDKKTIQAELEKALAKIHKAD--SWNVVSSGRTDTGVHSLGQTIH 64
Query: 114 FITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDP 173
F T S E A N LLP DI+VR++ +FHARF + K Y YK+ D
Sbjct: 65 FDTSLSIPE-ERWPQAFNRLLPDDIQVRDLQYVHHDFHARFDSVGKKYVYKVNTAREKDI 123
Query: 174 FQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGA 233
F+R++ YH Y L+ M +AA + G HDF++F + R D +++ V++++ ++ + G
Sbjct: 124 FKRNFVYHHPYVLSYEKMLEAAMHLEGTHDFTSF-SSPRTD-VIDKVRTIYAIELEKNGD 181
Query: 234 LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGL 293
G+GFLY+ VR + LL +GK I P+ +P+I +DR LA S P GL
Sbjct: 182 EWTFTYIGNGFLYQMVRVLTGTLLHVGKGKIRPEEIPEIFEGKDR-SLA--GPSIPGTGL 238
Query: 294 CLVEVKYNEEHLRL 307
L V Y++E L +
Sbjct: 239 YLTNVYYDQEALEV 252
>gi|225028683|ref|ZP_03717875.1| hypothetical protein EUBHAL_02962 [Eubacterium hallii DSM 3353]
gi|224953993|gb|EEG35202.1| tRNA pseudouridine synthase A [Eubacterium hallii DSM 3353]
Length = 253
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 138/257 (53%), Gaps = 15/257 (5%)
Query: 51 WRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+++ I YDG+RY GW+ Q TIQ +E L R+ E + ++GA RTD GVHA G
Sbjct: 5 YKMTICYDGSRYYGWEHQPDRDTIQGKLENVLTRMCG---EFIDVLGAGRTDAGVHARGM 61
Query: 111 VAHFI---TPFSYDGLE----SIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHY 163
VA+ + T G E I +N LP DI V+E+ A FHAR+ A K+Y Y
Sbjct: 62 VANAVFDATDKERGGRERTPDEIRDYMNRYLPDDIAVKEVREASERFHARYKAVGKLYRY 121
Query: 164 KIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSV 223
Y+ V FQR Y + + M+QAA Y GKHD+ +F R + + V+ V
Sbjct: 122 TCYDGPVKPVFQRKYVAVLEKRPDVEKMQQAAAYLEGKHDYKSFCGNPRMKK--STVRVV 179
Query: 224 FRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAK 283
+ ++ G+ + + G+GFL VR +V LL++GK I P+ +P+IL ++R+
Sbjct: 180 DKIEITRKGSFIYFDFHGTGFLQNMVRILVGTLLEVGKGKIKPEQIPEILEAKNRQMAGP 239
Query: 284 YALSAPPHGLCLVEVKY 300
+AP GLCL++V Y
Sbjct: 240 ---TAPAQGLCLIKVDY 253
>gi|304405587|ref|ZP_07387246.1| tRNA pseudouridine synthase A [Paenibacillus curdlanolyticus YK9]
gi|304345626|gb|EFM11461.1| tRNA pseudouridine synthase A [Paenibacillus curdlanolyticus YK9]
Length = 248
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/251 (39%), Positives = 139/251 (55%), Gaps = 9/251 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
+ ++YDGT Y+G+Q Q S TIQ IVE A+ +T E LR++G+ RTD GVHA GQV
Sbjct: 7 MTVSYDGTTYSGFQSQPSGNTIQDIVETAIHSLTG---EQLRIIGSGRTDAGVHARGQVF 63
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T S E A+N LP DI + E A FHAR SAK K Y Y I D
Sbjct: 64 NFHTE-SRIPQERWALAMNTRLPDDIVILEAWEAPEAFHARHSAKRKTYRYTIDRRKFPD 122
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
F R YA+H L MR+A + +G+HDF++F ++Q + V+++F + E G
Sbjct: 123 VFSRMYAFHHPTPLQVGAMREALTHLIGEHDFTSFTSIQSTQP--HHVRTIFEAWLEEDG 180
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
LL L V G+GFLY VR + ++ +G+ + P +P +LA DR A++ HG
Sbjct: 181 PLLYLFVTGNGFLYNMVRIIAGTMMWVGEGKLAPADIPAMLAAVDRTCAGPTAMA---HG 237
Query: 293 LCLVEVKYNEE 303
L L V+Y E
Sbjct: 238 LMLWNVEYPAE 248
>gi|354558482|ref|ZP_08977737.1| tRNA pseudouridine synthase A [Desulfitobacterium metallireducens
DSM 15288]
gi|353546960|gb|EHC16407.1| tRNA pseudouridine synthase A [Desulfitobacterium metallireducens
DSM 15288]
Length = 265
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/254 (39%), Positives = 136/254 (53%), Gaps = 11/254 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTS--PPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
RL ++YDGT Y G+Q Q PTIQ +E KL E++ L A RTDTGVHA G
Sbjct: 5 RLTVSYDGTAYHGFQRQPEFHGPTIQGNLESVW---KKLVGEEITLNTAGRTDTGVHATG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV +F+T E + A N LLP DIR+ E EFHAR+SA K Y YKI N
Sbjct: 62 QVVNFLTTAPIPD-EKLPKAFNSLLPRDIRILEAHTVAEEFHARYSACWKRYDYKIDNRP 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ D F R Y+ H L M++AA GKH+F AF + + ++++ +
Sbjct: 121 IADVFTRLYSLHEPIPLRVEKMKRAARLLEGKHNFKAFSSAGGVSKTFE--RNLYVCRIQ 178
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E G +LQ+ G GFLY VR +V L+ +GK + P+ +P IL + DRK + ++A
Sbjct: 179 EEGGILQITCIGDGFLYNMVRIIVGTLINVGKGWLQPEDIPDILQSMDRK---RAGITAR 235
Query: 290 PHGLCLVEVKYNEE 303
GL L V Y EE
Sbjct: 236 ARGLTLSYVHYGEE 249
>gi|319654901|ref|ZP_08008976.1| tRNA pseudouridine synthase A [Bacillus sp. 2_A_57_CT2]
gi|317393464|gb|EFV74227.1| tRNA pseudouridine synthase A [Bacillus sp. 2_A_57_CT2]
Length = 269
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 129/227 (56%), Gaps = 5/227 (2%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I YDGT +AG+Q Q T+Q +E+AL ++ K ED+++ + RTD GVHA G
Sbjct: 3 RFKCNITYDGTHFAGYQVQPGKRTVQGELERALKKLHK--GEDIKVTASGRTDAGVHARG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF +P + +E ALN LLP ++ + +FH RF AK K Y Y ++ +
Sbjct: 61 QVIHFDSPLNIP-IEKWEIALNSLLPDEVAIVGAETVPDDFHVRFDAKGKEYRYFVHCSS 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
DPF+RHYAY Y LNT ++QAA +G HDF++F + + + + V+ + +V
Sbjct: 120 RRDPFKRHYAYQYSYPLNTDAIKQAAADLIGTHDFTSFCSAKTE--VEDKVRELQEIEVQ 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQ 276
E +L G+GFLY VR + LL++G PD +P +L +
Sbjct: 178 EKEDMLIFRFRGTGFLYNMVRILAGTLLEVGSGERDPDSMPSVLKEK 224
>gi|266620223|ref|ZP_06113158.1| tRNA pseudouridine synthase A [Clostridium hathewayi DSM 13479]
gi|288868186|gb|EFD00485.1| tRNA pseudouridine synthase A [Clostridium hathewayi DSM 13479]
Length = 354
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/257 (38%), Positives = 141/257 (54%), Gaps = 14/257 (5%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L++AYDGT Y GWQ Q + TI+ ++ +AL T L E + ++GASRTD+GVHA G V
Sbjct: 5 KLIVAYDGTNYCGWQIQNNGRTIEEVLNEAL---TALLHEKVAVIGASRTDSGVHAEGNV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T + I ALN LP DIRV + +H R K Y Y+I N +
Sbjct: 62 AVFDTENRMPA-DKICFALNQRLPEDIRVLKSEEVPLTWHPRKCNCVKTYEYRILNRRIE 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFDVI 229
P R YAY Y L+ M+QAAEY VG+HDF++F Q D V++++ DV
Sbjct: 121 VPTLRLYAYFCYYPLDVEKMKQAAEYLVGEHDFTSFCAPRTQAEDM----VRTIYSLDVG 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G ++ + V GSGFLY VR + L+++G PP+ V +IL + R A +A
Sbjct: 177 KTGDMITIRVSGSGFLYNMVRIIAGTLMKVGLGVWPPEHVEEILDARSR---AAAGPTAV 233
Query: 290 PHGLCLVEVKYNEEHLR 306
GL L+ ++ E LR
Sbjct: 234 ARGLTLISLE-EETELR 249
>gi|255526613|ref|ZP_05393520.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7]
gi|296187301|ref|ZP_06855697.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7]
gi|255509721|gb|EET86054.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7]
gi|296048172|gb|EFG87610.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7]
Length = 247
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 138/249 (55%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+LVI YDGT Y GWQ Q + +IQ VE+A+ R TK+ ++ G+SRTD GVHA G V
Sbjct: 8 KLVIEYDGTNYCGWQRQDNAESIQQKVEEAIERATKVFS---KVTGSSRTDAGVHAEGFV 64
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
+F T S E+ ALN LP DI + E EFH+RF++ K Y Y + +
Sbjct: 65 CNFFTESSIPP-ENFKEALNVFLPEDIVIIESKEVDKEFHSRFNSIGKKYVYTVLTGSHR 123
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
+R+Y Y+ LN M++AA+YF+G HDFSAF + + ++++ ++
Sbjct: 124 PAIRRNYVYYFNKNLNIGQMKEAAKYFLGTHDFSAF--KKSGSSVKTSIRTIKELNIDID 181
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G ++ + G GFLY VR +V LL +G P+ + KI+++++R K SAP
Sbjct: 182 GNYIKFSIIGDGFLYNMVRIIVGTLLDVGTNRFNPEDIDKIISSKNRSNAGK---SAPAC 238
Query: 292 GLCLVEVKY 300
GL L +V Y
Sbjct: 239 GLTLEKVFY 247
>gi|118443953|ref|YP_878363.1| tRNA pseudouridine synthase A [Clostridium novyi NT]
gi|118134409|gb|ABK61453.1| tRNA pseudouridine synthase A [Clostridium novyi NT]
Length = 245
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/250 (36%), Positives = 140/250 (56%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDGTRY GWQ + TIQ +E L +L +E++ L+ + RTD GVHA Q
Sbjct: 5 KLTIQYDGTRYKGWQKLGNNDNTIQHKIESVL---GELLKEEVALIASGRTDAGVHANMQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T S + I L LP DI V+ ++ A FH+R++ K K+Y Y+I+N V
Sbjct: 62 VANFKTD-SRISNDEISKYLYKYLPQDIVVKSVNEASENFHSRYNVKEKVYTYRIHNSEV 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
D F R Y+YH KL+ M++A++ F+G+HDF +F ++ + + F E
Sbjct: 121 HDVFTRKYSYHVREKLDLKKMKEASKLFIGEHDFKSFTALKSKKKSTVKTINSITFRKKE 180
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+++ G+GFLY+ +R +V L+++G I D V ++ +DR + +AP
Sbjct: 181 DD--IEIVFSGNGFLYKMIRILVGTLVEVGLNKISIDDVKDVMDKKDRSIAPE---TAPA 235
Query: 291 HGLCLVEVKY 300
HGL L EVKY
Sbjct: 236 HGLTLTEVKY 245
>gi|385825279|ref|YP_005861621.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii DPC 6026]
gi|329666723|gb|AEB92671.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii DPC 6026]
Length = 263
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 148/255 (58%), Gaps = 9/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++L +AYDG + G+Q Q + T+Q ++E+AL ++TK +R + + G+ RTD GVHA G
Sbjct: 4 RYKLTMAYDGHLFHGFQIQPNERTVQGVIEEALKKMTKGKR--VVVHGSGRTDAGVHAKG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P +++ ALN L+P D E +FH ++S K K Y Y +
Sbjct: 62 QVIHFDYPGKEIPAKNMMLALNALMPIDTVFFESEIVDEDFHVQYSTKGKWYRYIVDQHR 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
DPF R Y H Y L+ +LM+QAA+ +G+HDF++F ++++ V++++ ++
Sbjct: 122 FTDPFNRFYTGHYPYPLDISLMQQAAKDLIGEHDFTSF--AASGGQIVDKVRTIYYVNIT 179
Query: 230 EMGALLQL--EVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
Q+ + G+GFLY VR +V LL+IG + P D +P++L +DR+E+ +
Sbjct: 180 PDSDKKQIIFDFIGNGFLYNMVRILVGTLLEIGNKKRPVDDIPRVLKAKDRQEV---RTT 236
Query: 288 APPHGLCLVEVKYNE 302
AP GL L +V Y +
Sbjct: 237 APASGLYLQQVFYED 251
>gi|15612730|ref|NP_241033.1| tRNA pseudouridine synthase A [Bacillus halodurans C-125]
gi|8134764|sp|Q9Z9J0.1|TRUA_BACHD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|4512436|dbj|BAA75303.1| truA [Bacillus halodurans]
gi|10172779|dbj|BAB03886.1| tRNA pseudouridine synthase A (pseudouridylate synthase I)
[Bacillus halodurans C-125]
Length = 263
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 136/241 (56%), Gaps = 8/241 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L +AYDGT +AG+Q Q + T+Q +E L + K +R+ + RTDTGVHA GQ+
Sbjct: 6 LKVAYDGTDFAGYQIQPNERTVQGELESVLKNIHK--GMSIRVTASGRTDTGVHARGQIV 63
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
HF T S+ ++ ALN LP DI V E + +FHAR+SAK+K Y Y++ A D
Sbjct: 64 HFDTSLSFP-VDRWPIALNSQLPADICVLEAADVPADFHARYSAKTKEYRYRVLTSAQAD 122
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
F+R+Y YH Y L+ M++AA +G HDFS+F + + + V+++ + G
Sbjct: 123 VFRRNYTYHVRYPLDVEAMQRAAVQLLGTHDFSSFCAAKAE--VEDKVRTIEDVALWREG 180
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
L + G+GFLY VR +V LL+IG + V KILA + R+ K +AP HG
Sbjct: 181 DELIFSIRGNGFLYNMVRIIVGTLLEIGAGKRSAEEVAKILAARSREAAGK---TAPGHG 237
Query: 293 L 293
L
Sbjct: 238 L 238
>gi|404330482|ref|ZP_10970930.1| tRNA pseudouridine synthase A [Sporolactobacillus vineae DSM 21990
= SL153]
Length = 246
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/252 (36%), Positives = 140/252 (55%), Gaps = 9/252 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
K + +AYDG+ + G+Q Q T+Q +E AL R+ E+ +R+ + RTD+GVHA+G
Sbjct: 3 KLKCTVAYDGSHFFGYQVQPGRRTVQREIESALERIHHGEK--VRITASGRTDSGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF +P + ++ ALN +LP DI +R+ FHAR+ K K YHY++ +
Sbjct: 61 QVFHFESPLAIPE-KNWPKALNSILPDDIYIRDAEIVPAHFHARYDVKRKEYHYRLLTRS 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
D F+R Y H L+ M +AA G HDFS F N + + +++V++ DV+
Sbjct: 120 EPDLFRRLYTLHVTVPLDLQKMNEAAARITGTHDFSCFCAA--NTEVKSKIRTVYQLDVV 177
Query: 230 EMGALLQL-EVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
A L + GSGFLY+ VR + LL +G + PD V KI+A +DR+ +K +
Sbjct: 178 PRPADETLIRISGSGFLYQMVRIITGTLLDVGTGKLQPDDVSKIIAGKDRQAASK---TV 234
Query: 289 PPHGLCLVEVKY 300
P GL L +V Y
Sbjct: 235 SPCGLTLWKVSY 246
>gi|348025368|ref|YP_004765172.1| tRNA pseudouridine synthase A [Megasphaera elsdenii DSM 20460]
gi|341821421|emb|CCC72345.1| tRNA pseudouridine synthase A [Megasphaera elsdenii DSM 20460]
Length = 261
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 137/254 (53%), Gaps = 9/254 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
LV+AYDGT + G+Q QT+ +IQ +E+ L + + R + + GA+RTD GVHA GQV
Sbjct: 8 LVVAYDGTDFHGFQRQTNAESIQRCLEQGL---SAIFRTPITIYGAARTDAGVHARGQVV 64
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F S E I A+ G LPP+I V F R K Y Y I N+ + D
Sbjct: 65 NFYGQGSIP-TEKIPYAMKGYLPPEIAVLSAKEMPDRFSVRHDNVGKHYRYSIDNNRMHD 123
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
PF YA+ L+ MR+ A +G HDFSAF +N +NPVK+++ + E G
Sbjct: 124 PFLLRYAWFIRKPLDRQAMREGAAILLGTHDFSAFEG--QNTTPMNPVKTMYSITLHERG 181
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+L ++V G GFLY VRN+ L+ +G + PD +IL DR +L +AP G
Sbjct: 182 HVLDIDVVGDGFLYHMVRNIAGGLVDLGLHRLTPDRFREILEGGDRTQLGA---TAPAQG 238
Query: 293 LCLVEVKYNEEHLR 306
LCL +V Y E L+
Sbjct: 239 LCLEKVFYEERELK 252
>gi|421238940|ref|ZP_15695504.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2071247]
gi|421245450|ref|ZP_15701948.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2081685]
gi|395600583|gb|EJG60738.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2071247]
gi|395607977|gb|EJG68073.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2081685]
Length = 249
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 141/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q+ ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQSHARSVQEEIEKTLTRLNK--GQTITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFILDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P +RHYA H Y L+ M+ A + G HDF+ F + + V+++ +I
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGF--TASGTSVEDKVRTITEASLI 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DRK LA +
Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRK-LA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|326202743|ref|ZP_08192611.1| tRNA pseudouridine synthase A [Clostridium papyrosolvens DSM 2782]
gi|325987327|gb|EGD48155.1| tRNA pseudouridine synthase A [Clostridium papyrosolvens DSM 2782]
Length = 247
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 141/252 (55%), Gaps = 10/252 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++++ YDG++Y GWQ + S +IQ +E L +K+ E+++++G RTD G HA
Sbjct: 4 YKIIVQYDGSKYKGWQKLKDSDLSIQGKIETVL---SKMSGEEIQVIGCGRTDAGTHAEN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
VA+F T S + I L LP DI VR + FHA+ +AK+K Y Y I
Sbjct: 61 YVANFHTN-SRMSPKLILNHLYEFLPQDIVVRSVEEVDERFHAQHNAKAKTYVYSITKGK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ F R Y++HS KL+ M+ AAEY +G HDF +F +++ + + ++++ D+I
Sbjct: 120 FRNVFNRKYSFHSEEKLDLVQMKNAAEYLIGTHDFQSFTSLKEGSK--STIRTINSLDII 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E G ++++ + G+ FL R +V LL++GK I V KIL + R E A
Sbjct: 178 ENGMVIEIIINGNDFLLHMARLVVGALLEVGKNKIKAIDVQKILNEKKRTEAVPM---AQ 234
Query: 290 PHGLCLVEVKYN 301
P GLCL +VKY+
Sbjct: 235 PKGLCLRDVKYS 246
>gi|225376773|ref|ZP_03753994.1| hypothetical protein ROSEINA2194_02415 [Roseburia inulinivorans DSM
16841]
gi|225211399|gb|EEG93753.1| hypothetical protein ROSEINA2194_02415 [Roseburia inulinivorans DSM
16841]
Length = 247
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 142/252 (56%), Gaps = 10/252 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L++AYDGT Y GWQ Q + TI+ ++ + L +KL E++ + GASRTD+GVH+ G V
Sbjct: 5 KLIVAYDGTNYCGWQVQPNGITIEQVLNENL---SKLLGEEITVTGASRTDSGVHSMGNV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T + I ALN LP DI V++ ++H R+ K Y Y+I N
Sbjct: 62 AIFDTETRMPA-DKISFALNQRLPEDIVVQDSCEVPSDWHPRYQVSRKTYEYRILNRTFR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P +R Y +KL+ M+QAA Y VG+HDF +F V ++ ++++ +V +
Sbjct: 121 MPNRRLDTYFYHHKLDVDKMKQAASYLVGEHDFKSFCAV--GAQVKTTTRTIYSCEVEKD 178
Query: 232 GA-LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G ++ + V G+GFLY VR + L+++G + PD +P+IL +DR +AP
Sbjct: 179 GNDIITIRVTGNGFLYNMVRIIAGTLIRVGGGEMAPDEIPQILGKKDRTAAGP---TAPA 235
Query: 291 HGLCLVEVKYNE 302
HGL ++ ++Y E
Sbjct: 236 HGLTMMGIEYGE 247
>gi|188584870|ref|YP_001916415.1| tRNA pseudouridine synthase A [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|229557997|sp|B2A4Q5.1|TRUA_NATTJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|179349557|gb|ACB83827.1| tRNA pseudouridine synthase A [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 253
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 141/254 (55%), Gaps = 11/254 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L IAYDG+ Y G+Q Q + T+Q +EKAL V + + ASRTD+GVHA GQV
Sbjct: 5 KLTIAYDGSNYHGYQLQENAVTVQEKLEKALNTVYYPYK--ITPYSASRTDSGVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F P + I ALN LP DI + F AR A K Y Y +Y+ M
Sbjct: 63 ANFFAPKQIP-IHKIPLALNTNLPNDIAIINAEVVGSNFRARRDAIKKEYRYYVYHAPYM 121
Query: 172 DPFQRHYAYH-SVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI- 229
DPF R+YA H L+ T ++QAA F+GKHDFS F +Q ++ ++PVK ++ FD+
Sbjct: 122 DPFWRNYALHYREQNLDYTKLQQAANDFIGKHDFSPFRAIQGSNPSIDPVKEIYEFDIDV 181
Query: 230 ---EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
E G L+ +V G+ FLY+ VR +V LLQIG + + V K L T DR +
Sbjct: 182 NAGEDGNLIIFKVIGNAFLYKMVRILVGTLLQIGNGKLEINAVKKALQTGDRLFVGP--- 238
Query: 287 SAPPHGLCLVEVKY 300
+A P GL L ++ Y
Sbjct: 239 TASPQGLVLQQIWY 252
>gi|422810634|ref|ZP_16859045.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J1-208]
gi|378750839|gb|EHY61430.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J1-208]
Length = 248
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 143/253 (56%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG+ + G+Q Q + T+Q +EKAL ++ K + +R+ + RTDTGVHA G
Sbjct: 3 RYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHK--GKSVRITASGRTDTGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + + E AL + P DI + +FHARF K Y Y +
Sbjct: 61 QVIHFDSELAITA-EKFQKALQVMTPFDISFLTVEEVPNDFHARFGTVGKEYRYVVKRTK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ DPF R++A H Y+L+ + M+ A+E +G+HDF++F + R +R + V++++ D
Sbjct: 120 IFDPFSRNFALHYPYELDISKMKLASERLIGEHDFTSFCSA-RTER-DSKVRTLYSIDFY 177
Query: 230 EM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E L + +G+GFLY VR + LL G+ I PD + K L +DR++L + +A
Sbjct: 178 EEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISKALLARDRQKLI--SKTA 235
Query: 289 PPHGLCLVEVKYN 301
PP GL L V Y
Sbjct: 236 PPQGLYLWRVDYE 248
>gi|379012659|ref|YP_005270471.1| tRNA pseudouridylate synthase A [Acetobacterium woodii DSM 1030]
gi|375303448|gb|AFA49582.1| tRNA pseudouridylate synthase A [Acetobacterium woodii DSM 1030]
Length = 246
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 135/249 (54%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+I+Y GT Y GWQ Q + TIQ K + + +L E + L G+ RTD GVHA GQ
Sbjct: 7 KLIISYRGTHYCGWQIQPNGVTIQA---KIIQGIRELTGETVNLNGSGRTDAGVHAVGQC 63
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F T + + ALN LP DIRV FH+RF+AK K Y YKIY + V
Sbjct: 64 ANFHTSSTIPA-DKFFRALNTRLPADIRVISSEECDLAFHSRFNAKGKSYVYKIYENPVA 122
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
PF A+H KL+ M++AA Y +G+HDF AF + + ++++ +
Sbjct: 123 SPFVFDLAFHVQRKLDWKAMKEAAGYLIGEHDFKAF--MASGSAVKTTIRTIEEISFEKN 180
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G L ++ +G+GFLY VR MV L ++G + P + IL + DR A+ ++AP
Sbjct: 181 GELREITFKGNGFLYNMVRIMVGTLYEVGYHRLEPQDITTILKSNDR---ARAGITAPAQ 237
Query: 292 GLCLVEVKY 300
GL L +V Y
Sbjct: 238 GLYLNKVYY 246
>gi|347534752|ref|YP_004841422.1| tRNA pseudouridine synthase A [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504808|gb|AEN99490.1| tRNA pseudouridine synthase A [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 263
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 145/274 (52%), Gaps = 15/274 (5%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ AYDGT++AG+Q Q T++ ++ K + R+ K +++ + G+ RTD GVHA
Sbjct: 3 RYKITFAYDGTKFAGFQKQPKQRTVEGVLTKLVNRMAKNPTQEIGVYGSGRTDAGVHALA 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVAHF PF E++ LN + P DI + ++ A P FHAR+ K Y YKI
Sbjct: 63 QVAHFDFPFDIPA-ENMLKGLNSMCPLDIEILKVKIAEPNFHARYDVTGKKYLYKISLGQ 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
DPF+R Y H + ++ A + FVGKHDFS+F V + + V++VF I
Sbjct: 122 FTDPFKRFYTAHWRFPMDFEKTEIAIQDFVGKHDFSSF--VASGAKPGSRVRTVFSVKAI 179
Query: 230 EMGA--LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
A + E G GF+Y Q+R M A+L++IG P + ++L +DR+E L+
Sbjct: 180 NDQANHEIHFEFYGDGFMYNQIRIMTAVLVEIGMGKRPIHDIQRLLKVKDRQEA---RLT 236
Query: 288 APPHGLCLVEVKYNEEHLRLPAACPLSSFGRHHS 321
P GL L +V Y P P S +HH
Sbjct: 237 MPAEGLYLKQVYY-------PGDDPEHSEKKHHD 263
>gi|212637986|ref|YP_002314506.1| Pseudouridylate synthase I [Anoxybacillus flavithermus WK1]
gi|226708641|sp|B7GJ99.1|TRUA_ANOFW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|212559466|gb|ACJ32521.1| Pseudouridylate synthase I [Anoxybacillus flavithermus WK1]
Length = 246
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/250 (36%), Positives = 141/250 (56%), Gaps = 9/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ IAYDGT +AG+Q Q T+Q +E+AL + K + +R+ + RTD VHA+GQV
Sbjct: 5 KCTIAYDGTNFAGYQIQQQKRTVQGELERALSIIHK--GQFVRVYASGRTDATVHAYGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP + E ALN LLP D+ V+E S FHARFS K K Y Y+++
Sbjct: 63 IHFDTPLTIPD-ERWPKALNALLPDDVIVKEASEVPSSFHARFSVKKKEYRYRVWIGE-K 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
+ F RHY YH Y ++ M +A Y +G HDF++F + + + + V++++ +V++
Sbjct: 121 NVFLRHYVYHHPYDVSVPAMNEALRYLIGTHDFTSFCSAK--TEVDDKVRTIYEAEVVQE 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G L + G+GFLY VR +V +L++G+ + + IL ++R K +AP H
Sbjct: 179 GEELIFRLVGNGFLYNMVRIIVGTVLEVGRGERCAEEIKTILEQKNRSVAGK---TAPGH 235
Query: 292 GLCLVEVKYN 301
GL L V Y+
Sbjct: 236 GLYLWHVSYD 245
>gi|450007375|ref|ZP_21827750.1| tRNA pseudouridine synthase A [Streptococcus mutans NMT4863]
gi|449186450|gb|EMB88281.1| tRNA pseudouridine synthase A [Streptococcus mutans NMT4863]
Length = 249
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 145/255 (56%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++++I+YDGT ++G+Q Q T+Q +EK L+R+ + +++ GA RTD GVHA+G
Sbjct: 3 RYKVIISYDGTNFSGFQRQPQMRTVQEEIEKTLLRLN--SGQAVKIHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + L+ P DI V ++ +FHAR+ K Y + +
Sbjct: 61 QVIHFDLPQQRD-LEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHRKTYEFLVDLGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P RHYA H YK++ ++++ A + G HDF+ F + + N V+++ R V
Sbjct: 120 PKNPLMRHYATHFPYKVDFSVVKAAIKKLRGTHDFTGFTAAGTS--VENKVRTISRATVE 177
Query: 230 EMG--ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ G L GSGFLY+QVRNMV LL+IG +P D + +IL + DR LA +
Sbjct: 178 KDGKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDR-SLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E+ Y++
Sbjct: 235 AASNGLYLKEIIYDD 249
>gi|125623329|ref|YP_001031812.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris
MG1363]
gi|389853654|ref|YP_006355898.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris
NZ9000]
gi|166228735|sp|A2RIH1.1|TRUA_LACLM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|124492137|emb|CAL97066.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris
MG1363]
gi|300070076|gb|ADJ59476.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 253
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 140/252 (55%), Gaps = 8/252 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ IAYDGT +AG+Q QT+ T+Q +EK L ++ E + L G+ RTD+GVHA+G
Sbjct: 3 RYKATIAYDGTDFAGFQSQTNQRTVQEEIEKVLSKLNSFE--PVILQGSGRTDSGVHAFG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF LE + L+ P DI V+++ ++HAR+ K Y Y + N
Sbjct: 61 QVIHFDLNGKARDLERLRFGLDTQTPADIAVKKVELVPDDWHARYQKHEKTYEYYLENSV 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
PF RH + Y LN M+ A VG+HDF+ F + + V+++++ ++I
Sbjct: 121 TRSPFHRHSKAYFRYPLNFERMQGAMVKLVGQHDFTGF--TASGSSVDDKVRTIYQAEII 178
Query: 230 EMGAL-LQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
++ + G+GFLY+QVRNMV +++IG + +P + KIL +++R +A
Sbjct: 179 QLDKENFKFIFRGNGFLYKQVRNMVGTVIKIGNDRMPVSQIDKILTSKNRNFAGP---TA 235
Query: 289 PPHGLCLVEVKY 300
P GL L EVKY
Sbjct: 236 APEGLYLKEVKY 247
>gi|419783006|ref|ZP_14308802.1| tRNA pseudouridine(38-40) synthase [Streptococcus oralis SK610]
gi|383182740|gb|EIC75290.1| tRNA pseudouridine(38-40) synthase [Streptococcus oralis SK610]
Length = 249
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 140/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGFAFAGFQRQPHARSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SKIY + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIEIVADDFHCRYAKHSKIYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M++A + G HDF+ F D++ ++ D
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQEAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLTVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL ++R +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGSNRMPVEQIDLILEKKNR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|167629501|ref|YP_001680000.1| tRNA pseudouridine synthase a [Heliobacterium modesticaldum Ice1]
gi|167592241|gb|ABZ83989.1| tRNA pseudouridine synthase a [Heliobacterium modesticaldum Ice1]
Length = 259
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 142/258 (55%), Gaps = 18/258 (6%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSP--PTIQCIVEKALIRVTK-LEREDLRLVGASRTDTGVH 106
+ +L +AYDGT Y G+Q Q +P PTIQ AL+R K L E++++ A RTD GVH
Sbjct: 5 RLKLTVAYDGTCYHGFQTQENPALPTIQ----DALVRAIKVLTGEEVKVNCAGRTDAGVH 60
Query: 107 AWGQVAHFIT--PFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYK 164
A GQV F+T P D A+N +LPPD+ V FH+RF A K Y Y
Sbjct: 61 ARGQVVDFVTSSPIPDDRFPF---AMNAILPPDVAVVAAKTVPLAFHSRFGALGKHYRYT 117
Query: 165 IYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF 224
IYN + PF R Y++ L M AA+ FVG HDF F + + V++V+
Sbjct: 118 IYNHRIPSPFHRRYSHQVFPPLQFEAMAAAAQCFVGTHDFRGFCAT--GSPVKDFVRTVY 175
Query: 225 RFDVIEMGA-LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAK 283
R D+ L L+V G+GFLY +R + L+ +GK I + +P I+A++DR +
Sbjct: 176 RCDLTRQEEHRLVLDVMGNGFLYNMIRIIAGTLIDVGKGKIALEEIPAIIASRDR---TR 232
Query: 284 YALSAPPHGLCLVEVKYN 301
++APP GLCL++V ++
Sbjct: 233 AGMTAPPQGLCLMKVWHD 250
>gi|406980140|gb|EKE01792.1| hypothetical protein ACD_21C00052G0010 [uncultured bacterium]
Length = 252
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/254 (37%), Positives = 139/254 (54%), Gaps = 14/254 (5%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I YDGT Y GWQ Q + TIQ VE AL +++ + ++++ A RTD GVHA GQV
Sbjct: 5 LGIEYDGTNYCGWQRQDNVCTIQEKVEDAL---SQIAVQPIKVICAGRTDAGVHALGQVV 61
Query: 113 HFITPFSYDGLESIHAALNGL---LPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
HF T D S A + G LP DIRV +FHAR+SA ++ Y Y IYN+
Sbjct: 62 HFDT----DAKRSDQAWIMGTNCNLPADIRVLWARHVADDFHARYSATARQYRYIIYNNK 117
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
V RH A S + LN M +A +Y +GKHDFS+F + ++V V
Sbjct: 118 VASAILRHRAMWSPFVLNEKSMHEAGQYLIGKHDFSSFRGSGCQAKTAE--RTVISLVVA 175
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
G ++ ++++ + FL VR++V +L+++GK PP ++L +DRK A ++AP
Sbjct: 176 RNGHMITIDIKANAFLLHMVRSIVGMLVKVGKGDKPPSWAQEVLIARDRKVPA--VITAP 233
Query: 290 PHGLCLVEVKYNEE 303
GL LV V Y ++
Sbjct: 234 AQGLYLVGVGYEQD 247
>gi|294055498|ref|YP_003549156.1| tRNA pseudouridine synthase A [Coraliomargarita akajimensis DSM
45221]
gi|293614831|gb|ADE54986.1| tRNA pseudouridine synthase A [Coraliomargarita akajimensis DSM
45221]
Length = 250
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 140/253 (55%), Gaps = 9/253 (3%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+W+ + +YDGT + GWQ Q + +Q ++E AL ++ L L+ G+ RTD GVHA
Sbjct: 1 MRWKCICSYDGTDFEGWQRQRNGLAVQNVLEAALSQIFNLP---LKTHGSGRTDAGVHAR 57
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQ HF + +D + I A L+ +LP +R+ I FHAR SA K Y Y+ Y+
Sbjct: 58 GQCFHFDGDWPHDTGKLIRA-LHSILPKSLRIERIDLVDERFHARHSAIGKRYVYR-YHL 115
Query: 169 AVMDPFQRHYAYHSV-YKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
P ++ Y + +N M++AA VG HDFSA+ D NPVK+V+R D
Sbjct: 116 GRAHPLEQRYVWACRDTAINFGAMQEAALRLVGTHDFSAYGATHGKDSDPNPVKNVYRLD 175
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+++ G + L EGSG+LYR VR+ L +G++ + PD + +IL ++ R ++
Sbjct: 176 LVKHGRQIILTTEGSGYLYRMVRSFAGALYSVGRDRLSPDDIEEILRSKIRTH---RIVT 232
Query: 288 APPHGLCLVEVKY 300
AP GLCL EV Y
Sbjct: 233 APGVGLCLDEVFY 245
>gi|116493132|ref|YP_804867.1| pseudouridylate synthase [Pediococcus pentosaceus ATCC 25745]
gi|116103282|gb|ABJ68425.1| Pseudouridylate synthase [Pediococcus pentosaceus ATCC 25745]
Length = 248
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 146/254 (57%), Gaps = 8/254 (3%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
++++++AYDGT +AG+Q Q + T++ ++++ + ++ K ++ + G+ RTD GVHA
Sbjct: 1 MRYKIILAYDGTNFAGFQMQPNQRTVEGVLKRIVNKIAKNPTPEISVYGSGRTDAGVHAL 60
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF +HA LN LP D++V+++ FHARF+ K Y Y++
Sbjct: 61 GQVVHFDLSIEMSERSMLHA-LNSQLPLDMQVKKVEIVDETFHARFTTHGKKYQYRMALG 119
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
+DPF+R+Y H + +N L+++A + G HDFS+F V + + V++++ V
Sbjct: 120 QFVDPFKRNYTGHWKFPINIGLIQKAIKDLEGTHDFSSF--VASGSTVKDHVRTIYEAKV 177
Query: 229 IEMGALLQL--EVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
E ++ E G+GFLY VR MVA+L++IG + P D +P++ +DR +
Sbjct: 178 WEDKKQNEIVFEFYGNGFLYNMVRIMVAVLVEIGSKRRPADDIPRLFEVKDRNQARG--- 234
Query: 287 SAPPHGLCLVEVKY 300
+AP GL L EV Y
Sbjct: 235 TAPASGLYLKEVDY 248
>gi|166033550|ref|ZP_02236379.1| hypothetical protein DORFOR_03276 [Dorea formicigenerans ATCC
27755]
gi|346309044|ref|ZP_08851147.1| tRNA pseudouridine synthase A [Dorea formicigenerans 4_6_53AFAA]
gi|166026735|gb|EDR45492.1| tRNA pseudouridine synthase A [Dorea formicigenerans ATCC 27755]
gi|345901288|gb|EGX71091.1| tRNA pseudouridine synthase A [Dorea formicigenerans 4_6_53AFAA]
Length = 266
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 146/269 (54%), Gaps = 29/269 (10%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
R+V+AYDGT Y GWQ Q + TI+ I+ + +++KL ED+R++GASRTD+GVHA G V
Sbjct: 5 RIVVAYDGTNYCGWQIQPNGITIEEILNR---QISKLTGEDIRIIGASRTDSGVHALGNV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAK-SKIYHYKIYNDAV 170
A F T G + ALN +P DI + ++H R+ + SK Y Y IYN V
Sbjct: 62 AVFDTESRIPG-DRFAYALNQKMPEDIVIVRSDEVQIDWHPRYQNEISKTYEYHIYNAKV 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV-- 228
+P + Y+ + L+ MRQ A+Y +G+HDF++F NV+ N + + V++V +
Sbjct: 121 RNPLKNRYSTFVSFDLDVEKMRQGAKYILGEHDFASFCNVRTNAK--DTVRTVHEITIKE 178
Query: 229 -----------------IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPK 271
+E + + V G+GFLY VR + L+++G+ P+ +
Sbjct: 179 IPMDKFQASNWGQENSNLENEKEIVIRVTGNGFLYNMVRIIAGTLIRVGRGFYEPEKIRD 238
Query: 272 ILATQDRKELAKYALSAPPHGLCLVEVKY 300
IL + KE ++APP+GL LV + Y
Sbjct: 239 IL---EAKEHTSEGITAPPNGLVLVSIDY 264
>gi|42518460|ref|NP_964390.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii NCC 533]
gi|51316717|sp|Q74L59.1|TRUA_LACJO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|41582745|gb|AAS08356.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii NCC 533]
Length = 263
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 148/255 (58%), Gaps = 9/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++L +AYDG + G+Q Q + T+Q ++E+AL ++TK +R + + G+ RTD GVHA G
Sbjct: 4 RYKLTMAYDGHLFHGFQIQPNQRTVQGVIEEALKKMTKGKR--VVVHGSGRTDAGVHAKG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P +++ ALN L+P D E +FH ++S K K Y Y +
Sbjct: 62 QVIHFDYPGKEIPAKNMMLALNALMPIDTVFFESEIVDEDFHVQYSTKGKWYRYVVDQHR 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
DPF R Y H Y L+ +LM+QAA+ +G+HDF++F ++++ V++++ ++
Sbjct: 122 FTDPFNRFYTGHYPYPLDISLMKQAAKDLIGEHDFTSF--AASGGQIVDKVRTIYYVNIT 179
Query: 230 EMGALLQL--EVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
Q+ + G+GFLY VR +V LL+IG + P D +P++L +DR+E+ +
Sbjct: 180 PDPDKKQIIFDFIGNGFLYNMVRILVGTLLEIGNKKRPVDDIPRVLKAKDRQEV---RTT 236
Query: 288 APPHGLCLVEVKYNE 302
AP GL L +V Y +
Sbjct: 237 APASGLYLQQVFYED 251
>gi|315612755|ref|ZP_07887666.1| tRNA pseudouridine synthase A [Streptococcus sanguinis ATCC 49296]
gi|315314865|gb|EFU62906.1| tRNA pseudouridine synthase A [Streptococcus sanguinis ATCC 49296]
Length = 274
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 28 RYKATISYDGFAFAGFQRQPHARSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 85
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 86 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIEIVADDFHCRYAKHSKTYEFIVDRGR 144
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M+ A + G HDF+ F D++ ++ R
Sbjct: 145 PKNPMRRHYATHFPYPLDVERMQMAIKKLEGTHDFTGFTASGTSVEDKVRTITEA--RLS 202
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 203 VDETGQFLTFSFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILKKKDR-QLA--GPT 259
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 260 AAPNGLYLKEIRYEE 274
>gi|295425622|ref|ZP_06818309.1| tRNA pseudouridine synthase A [Lactobacillus amylolyticus DSM
11664]
gi|295064638|gb|EFG55559.1| tRNA pseudouridine synthase A [Lactobacillus amylolyticus DSM
11664]
Length = 262
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 150/255 (58%), Gaps = 9/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++++AYDG + G+Q Q + T+Q VE+AL ++TK +R + + G+ RTD GVHA G
Sbjct: 4 RYKMLMAYDGHLFHGFQVQPNQRTVQGTVEEALKKMTKGKR--VIVEGSGRTDAGVHAMG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV F P + E + ALN ++P DI +E A P+FH R+S K K Y Y++ D
Sbjct: 62 QVIQFDYPGNRIPAEKMILALNSMMPMDIIFKECEIASPDFHVRYSIKGKWYRYRMSLDH 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV- 228
++PF+R Y H Y ++ + M++AA+ +GKHDF++F ++ N V++++ +V
Sbjct: 122 FVNPFKRFYTGHYPYPIDVSKMKEAAKDLLGKHDFTSF--AASGGQIKNKVRTMYYVNVE 179
Query: 229 -IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E L + SGFLY VR +VA LL+IG P P+I+ +DR ++ + +
Sbjct: 180 KNESQNELVFDFICSGFLYNMVRILVATLLEIGSGKRPVHDFPRIIKAKDRLQVTQ---T 236
Query: 288 APPHGLCLVEVKYNE 302
AP GL L V Y++
Sbjct: 237 APASGLYLYHVFYDK 251
>gi|257865435|ref|ZP_05645088.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC30]
gi|257871770|ref|ZP_05651423.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC10]
gi|257875038|ref|ZP_05654691.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC20]
gi|325569125|ref|ZP_08145372.1| tRNA pseudouridine synthase A [Enterococcus casseliflavus ATCC
12755]
gi|420262845|ref|ZP_14765486.1| tRNA pseudouridine synthase [Enterococcus sp. C1]
gi|257799369|gb|EEV28421.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC30]
gi|257805934|gb|EEV34756.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC10]
gi|257809204|gb|EEV38024.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC20]
gi|325157583|gb|EGC69741.1| tRNA pseudouridine synthase A [Enterococcus casseliflavus ATCC
12755]
gi|394770602|gb|EJF50406.1| tRNA pseudouridine synthase [Enterococcus sp. C1]
Length = 245
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 139/250 (55%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDG RY GWQ S TIQ VE + +T E++ +VG+ RTD G HA GQ
Sbjct: 5 KLTIEYDGKRYLGWQRLGDSEKTIQEKVEGVIKLLTG---EEIEIVGSGRTDAGTHARGQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T L + N LP DI V +I FHAR+ AK K Y Y ++N+A+
Sbjct: 62 VANFKTTHQMS-LPEMQQFFNRYLPQDIVVNKIEEVPERFHARYHAKGKQYSYYVWNNAI 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
F R+ ++H L+ M+QAAE +G HDF F ++++ + + V+++ +
Sbjct: 121 PSVFARNTSFHCPQPLDLEKMQQAAEKLIGTHDFIGFSALKKSKK--STVRTIDEITITP 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G LL+ +G+GFL++ VR + L+ IG +PP+++ ++LA + R+ + + P
Sbjct: 179 EGDLLRFTFKGNGFLHKMVRILTGTLIAIGDGTLPPEVIDQVLADKVRQAAGE---TVPS 235
Query: 291 HGLCLVEVKY 300
HGL L EV Y
Sbjct: 236 HGLFLDEVYY 245
>gi|227888821|ref|ZP_04006626.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii ATCC 33200]
gi|227850658|gb|EEJ60744.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii ATCC 33200]
Length = 263
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 146/253 (57%), Gaps = 9/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++L +AYDG + G+Q Q + T+Q ++E+AL ++TK +R + + G+ RTD GVHA G
Sbjct: 4 RYKLTMAYDGHLFHGFQIQPNERTVQGVIEEALKKMTKGKR--VVVHGSGRTDAGVHAKG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P +++ ALN L+P D E +FH ++S K K Y Y +
Sbjct: 62 QVIHFDYPGKEIPAKNMMLALNALMPIDTVFFESEIVDEDFHVQYSTKGKWYRYVVDQHR 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
DPF R Y H Y L+ +LM+QAA +G+HDF++F ++++ V++++ ++
Sbjct: 122 FTDPFNRFYTGHYPYPLDISLMQQAARDLIGEHDFTSF--AASGGQIVDKVRTIYYVNIT 179
Query: 230 EMGALLQL--EVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
Q+ + G+GFLY VR +V LL+IG + P D +P++L T+DR+E+ +
Sbjct: 180 PDPDKKQIIFDFIGNGFLYNMVRILVGTLLEIGNQKRPVDDIPRVLKTKDRQEVRT---T 236
Query: 288 APPHGLCLVEVKY 300
AP GL L V Y
Sbjct: 237 APASGLYLQHVFY 249
>gi|270157075|ref|ZP_06185732.1| tRNA pseudouridine synthase A [Legionella longbeachae D-4968]
gi|289164512|ref|YP_003454650.1| tRNA-pseudouridine synthase I [Legionella longbeachae NSW150]
gi|269989100|gb|EEZ95354.1| tRNA pseudouridine synthase A [Legionella longbeachae D-4968]
gi|288857685|emb|CBJ11528.1| tRNA-pseudouridine synthase I [Legionella longbeachae NSW150]
Length = 262
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/260 (36%), Positives = 145/260 (55%), Gaps = 10/260 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
LV+ YDG++Y GWQ QT T+Q VE AL +V L + +V A RTDTGVHA QV
Sbjct: 5 LVLEYDGSKYHGWQAQTGLHTVQQAVENALSKVADLP---ISVVCAGRTDTGVHATNQVI 61
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
HF + IH +N LP DI V+ EFHAR+SA ++ Y Y IYN A+
Sbjct: 62 HFDSEKQRSIRAWIHG-VNSFLPKDICVKWGKELSEEFHARYSATARRYRYVIYNSAIRP 120
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
R +L+ LM QAA+ +G++DF++F +V+ P+++V++ V MG
Sbjct: 121 ALLRSNVTWQYRQLDHRLMHQAAQVLLGENDFTSFRSVECQSN--TPMRNVYKLQVNRMG 178
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
L+ +++ + FL+ VRN+ +L+ +G P V ++L +DR+ A+ +AP +G
Sbjct: 179 DLVIIDITANAFLHHMVRNIAGVLIAVGSGKRPVFWVEEVLQAKDRRLGAE---TAPAYG 235
Query: 293 LCLVEVKYNEEHLRLPAACP 312
L LV+V Y +E + CP
Sbjct: 236 LYLVQVNYPQE-FSILQNCP 254
>gi|419781142|ref|ZP_14306974.1| tRNA pseudouridine(38-40) synthase [Streptococcus oralis SK100]
gi|383184534|gb|EIC77048.1| tRNA pseudouridine(38-40) synthase [Streptococcus oralis SK100]
Length = 249
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIEIVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M+ A + G HDF+ F D++ ++ D
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQMAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLSVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|419535067|ref|ZP_14074566.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17457]
gi|379563228|gb|EHZ28232.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17457]
Length = 249
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 138/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYVFAGFQRQPHARSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ MR+A + G HDF+ F D++ ++ D
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMREAIKKLEGTHDFTGFTASGTSVEDKIRTITEASLTVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E+ Y E
Sbjct: 235 AAPNGLYLKEICYEE 249
>gi|15903494|ref|NP_359044.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae R6]
gi|116516785|ref|YP_816881.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae D39]
gi|148988650|ref|ZP_01820083.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP6-BS73]
gi|149004327|ref|ZP_01829087.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP14-BS69]
gi|169833383|ref|YP_001694996.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae
Hungary19A-6]
gi|182684548|ref|YP_001836295.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CGSP14]
gi|221232354|ref|YP_002511507.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae ATCC
700669]
gi|225855038|ref|YP_002736550.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae JJA]
gi|237649225|ref|ZP_04523477.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CCRI 1974]
gi|237822076|ref|ZP_04597921.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CCRI
1974M2]
gi|307127806|ref|YP_003879837.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 670-6B]
gi|415700074|ref|ZP_11457788.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 459-5]
gi|415750000|ref|ZP_11477944.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SV35]
gi|415752816|ref|ZP_11479798.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SV36]
gi|417677324|ref|ZP_12326731.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17545]
gi|417696757|ref|ZP_12345935.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47368]
gi|418074430|ref|ZP_12711683.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA11184]
gi|418076826|ref|ZP_12714059.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47502]
gi|418079036|ref|ZP_12716258.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 4027-06]
gi|418081228|ref|ZP_12718438.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 6735-05]
gi|418087286|ref|ZP_12724455.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47033]
gi|418089962|ref|ZP_12727116.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA43265]
gi|418092201|ref|ZP_12729341.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44452]
gi|418098928|ref|ZP_12736025.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 6901-05]
gi|418105708|ref|ZP_12742764.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44500]
gi|418108023|ref|ZP_12745060.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41410]
gi|418110548|ref|ZP_12747569.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA49447]
gi|418117281|ref|ZP_12754250.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 6963-05]
gi|418121667|ref|ZP_12758610.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44194]
gi|418123934|ref|ZP_12760865.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44378]
gi|418128478|ref|ZP_12765371.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae NP170]
gi|418133044|ref|ZP_12769915.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA11304]
gi|418134748|ref|ZP_12771605.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA11426]
gi|418137671|ref|ZP_12774509.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA11663]
gi|418144559|ref|ZP_12781354.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13494]
gi|418155581|ref|ZP_12792308.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA16242]
gi|418157885|ref|ZP_12794601.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA16833]
gi|418169595|ref|ZP_12806237.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA19077]
gi|418173995|ref|ZP_12810607.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41277]
gi|418178656|ref|ZP_12815239.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41565]
gi|418183137|ref|ZP_12819695.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA43380]
gi|418189838|ref|ZP_12826350.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47373]
gi|418202820|ref|ZP_12839249.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA52306]
gi|418217048|ref|ZP_12843728.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae
Netherlands15B-37]
gi|418221623|ref|ZP_12848276.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47751]
gi|418225978|ref|ZP_12852606.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae NP112]
gi|419423509|ref|ZP_13963722.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA43264]
gi|419431985|ref|ZP_13972118.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae EU-NP05]
gi|419433884|ref|ZP_13974002.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA40183]
gi|419440790|ref|ZP_13980835.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA40410]
gi|419455961|ref|ZP_13995918.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae EU-NP04]
gi|419458197|ref|ZP_13998139.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA02254]
gi|419460404|ref|ZP_14000332.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA02270]
gi|419464984|ref|ZP_14004875.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA04175]
gi|419467208|ref|ZP_14007089.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA05248]
gi|419469409|ref|ZP_14009277.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA06083]
gi|419471498|ref|ZP_14011357.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA07914]
gi|419473665|ref|ZP_14013514.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13430]
gi|419482649|ref|ZP_14022436.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA40563]
gi|419489211|ref|ZP_14028960.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44386]
gi|419493723|ref|ZP_14033448.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47210]
gi|419497972|ref|ZP_14037679.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47522]
gi|419512990|ref|ZP_14052622.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA05578]
gi|419517196|ref|ZP_14056812.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA02506]
gi|421211483|ref|ZP_15668465.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070035]
gi|421232315|ref|ZP_15688956.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2080076]
gi|421236701|ref|ZP_15693298.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2071004]
gi|421266601|ref|ZP_15717481.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SPAR27]
gi|421273149|ref|ZP_15723990.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SPAR55]
gi|421281595|ref|ZP_15732392.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA04672]
gi|421283735|ref|ZP_15734521.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA04216]
gi|421286010|ref|ZP_15736786.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA60190]
gi|421299061|ref|ZP_15749748.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA60080]
gi|421307806|ref|ZP_15758448.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA60132]
gi|421310007|ref|ZP_15760632.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA62681]
gi|38258775|sp|Q8CWQ1.1|TRUA_STRR6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|122278273|sp|Q04JF7.1|TRUA_STRP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|238688376|sp|B1ID11.1|TRUA_STRPI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|238691180|sp|B2IRB1.1|TRUA_STRPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|254764868|sp|B8ZM12.1|TRUA_STRPJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|254764870|sp|C1CFH9.1|TRUA_STRZJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|15459107|gb|AAL00255.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae R6]
gi|116077361|gb|ABJ55081.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae D39]
gi|147757704|gb|EDK64720.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP14-BS69]
gi|147925851|gb|EDK76926.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP6-BS73]
gi|168995885|gb|ACA36497.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae
Hungary19A-6]
gi|182629882|gb|ACB90830.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CGSP14]
gi|220674815|emb|CAR69389.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae ATCC
700669]
gi|225723432|gb|ACO19285.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae JJA]
gi|306484868|gb|ADM91737.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 670-6B]
gi|332072765|gb|EGI83246.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17545]
gi|332200155|gb|EGJ14228.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47368]
gi|353746563|gb|EHD27223.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 4027-06]
gi|353746966|gb|EHD27624.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47502]
gi|353748499|gb|EHD29151.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA11184]
gi|353751967|gb|EHD32598.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 6735-05]
gi|353758302|gb|EHD38894.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47033]
gi|353761153|gb|EHD41725.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA43265]
gi|353762901|gb|EHD43458.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44452]
gi|353768910|gb|EHD49432.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 6901-05]
gi|353775884|gb|EHD56363.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44500]
gi|353778300|gb|EHD58768.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41410]
gi|353781945|gb|EHD62385.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA49447]
gi|353787962|gb|EHD68360.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 6963-05]
gi|353792503|gb|EHD72875.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44194]
gi|353795754|gb|EHD76100.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44378]
gi|353798977|gb|EHD79300.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae NP170]
gi|353804927|gb|EHD85205.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA11304]
gi|353807025|gb|EHD87297.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13494]
gi|353819830|gb|EHE00019.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA16242]
gi|353824333|gb|EHE04507.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA16833]
gi|353834186|gb|EHE14291.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA19077]
gi|353837951|gb|EHE18032.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41277]
gi|353842715|gb|EHE22761.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41565]
gi|353848120|gb|EHE28137.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA43380]
gi|353853565|gb|EHE33546.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47373]
gi|353867377|gb|EHE47272.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA52306]
gi|353870321|gb|EHE50194.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae
Netherlands15B-37]
gi|353874933|gb|EHE54787.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47751]
gi|353881175|gb|EHE60989.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae NP112]
gi|353900626|gb|EHE76177.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA11663]
gi|353901985|gb|EHE77515.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA11426]
gi|379529861|gb|EHY95102.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA02254]
gi|379530540|gb|EHY95779.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA02270]
gi|379536584|gb|EHZ01770.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA04175]
gi|379542955|gb|EHZ08107.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA05248]
gi|379544213|gb|EHZ09358.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA06083]
gi|379546214|gb|EHZ11353.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA07914]
gi|379550829|gb|EHZ15925.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13430]
gi|379576885|gb|EHZ41809.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA40183]
gi|379577860|gb|EHZ42777.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA40410]
gi|379579241|gb|EHZ44148.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA40563]
gi|379586081|gb|EHZ50935.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA43264]
gi|379586753|gb|EHZ51603.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44386]
gi|379592296|gb|EHZ57112.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47210]
gi|379598805|gb|EHZ63590.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47522]
gi|379627937|gb|EHZ92543.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae EU-NP04]
gi|379629066|gb|EHZ93667.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae EU-NP05]
gi|379634155|gb|EHZ98720.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA05578]
gi|379639269|gb|EIA03813.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA02506]
gi|381308463|gb|EIC49306.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SV36]
gi|381314770|gb|EIC55536.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 459-5]
gi|381318294|gb|EIC59019.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SV35]
gi|395572591|gb|EJG33186.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070035]
gi|395594818|gb|EJG55053.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2080076]
gi|395601464|gb|EJG61611.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2071004]
gi|395866669|gb|EJG77797.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SPAR27]
gi|395874352|gb|EJG85438.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SPAR55]
gi|395880421|gb|EJG91473.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA04216]
gi|395880860|gb|EJG91911.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA04672]
gi|395885997|gb|EJG97018.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA60190]
gi|395900532|gb|EJH11470.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA60080]
gi|395907191|gb|EJH18085.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA60132]
gi|395909622|gb|EJH20497.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA62681]
Length = 249
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 141/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q+ ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQSHARSVQEEIEKTLTRLNK--GQTITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P +RHYA H Y L+ M+ A + G HDF+ F + + V+++ +I
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGF--TASGTSVEDKVRTITEASLI 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|168483521|ref|ZP_02708473.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC1873-00]
gi|418162634|ref|ZP_12799316.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17328]
gi|418176400|ref|ZP_12812991.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41437]
gi|418219323|ref|ZP_12845988.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae NP127]
gi|418239139|ref|ZP_12865690.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419462760|ref|ZP_14002663.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA02714]
gi|419526312|ref|ZP_14065871.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA14373]
gi|172043050|gb|EDT51096.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC1873-00]
gi|353827146|gb|EHE07300.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17328]
gi|353840471|gb|EHE20535.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41437]
gi|353873683|gb|EHE53542.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae NP127]
gi|353892130|gb|EHE71879.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|379530192|gb|EHY95432.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA02714]
gi|379557557|gb|EHZ22601.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA14373]
Length = 249
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 138/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYVFAGFQRQPHARSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVLHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ MR+A + G HDF+ F D++ ++ D
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMREAIKKLEGTHDFTGFTASGTSVEDKIRTITEASLTVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E+ Y E
Sbjct: 235 AAPNGLYLKEICYEE 249
>gi|91792843|ref|YP_562494.1| tRNA pseudouridine synthase A [Shewanella denitrificans OS217]
gi|123061034|sp|Q12P55.1|TRUA_SHEDO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|91714845|gb|ABE54771.1| tRNA pseudouridine synthase A [Shewanella denitrificans OS217]
Length = 261
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/252 (37%), Positives = 140/252 (55%), Gaps = 11/252 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I YDG+ Y GWQ Q ++Q +EKAL + + E + +V A RTD GVH GQV
Sbjct: 5 LGIEYDGSSYCGWQRQVEVDSVQAQLEKAL---SLIANEPIEVVCAGRTDAGVHGTGQVV 61
Query: 113 HF-ITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF T D ++ +N LP I VR + FHARFSA ++ Y Y IYN
Sbjct: 62 HFDTTVIRPDSAWTL--GVNANLPDTIAVRWVKLVDDSFHARFSATARRYRYVIYNHKFR 119
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
RH H ++ TLM QAA+ +G+HDF++F +Q + +P +SV +V
Sbjct: 120 PGLLRHGLSHYHGDIDETLMHQAAQQLLGEHDFTSFRAMQCQSK--SPFRSVHEVNVTRQ 177
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G + ++++ + FL+ VRN+V LL+IG P + + K++A +DR++ A +A P+
Sbjct: 178 GMYIMVDIKANAFLHHMVRNIVGSLLEIGLGNQPLNWISKLIAVKDRRQAAA---TAKPN 234
Query: 292 GLCLVEVKYNEE 303
GL LV+V Y EE
Sbjct: 235 GLYLVDVTYPEE 246
>gi|419766473|ref|ZP_14292672.1| tRNA pseudouridine(38-40) synthase [Streptococcus mitis SK579]
gi|383354092|gb|EID31673.1| tRNA pseudouridine(38-40) synthase [Streptococcus mitis SK579]
Length = 249
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q+ ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQSHARSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVEDDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M+ A + G HDF+ F D++ ++ D
Sbjct: 120 PKNPMRRHYATHFSYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLTVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|94968472|ref|YP_590520.1| tRNA pseudouridine synthase A [Candidatus Koribacter versatilis
Ellin345]
gi|94550522|gb|ABF40446.1| tRNA pseudouridine synthase A [Candidatus Koribacter versatilis
Ellin345]
Length = 257
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 130/241 (53%), Gaps = 18/241 (7%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +AYDG + GWQ Q PTIQ + + + R+T E G+ RTD GVHA G
Sbjct: 4 NFKITLAYDGHEFHGWQIQPGKPTIQGTLAETIERITG---EQTLPQGSGRTDAGVHALG 60
Query: 110 QVAHFI--TPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
QVA TP DGL H ALN LPP IR + A P+FHAR SAK K Y Y+IY
Sbjct: 61 QVASVALQTPIPADGL---HIALNDKLPPSIRALTVGEAAPDFHARHSAKGKTYRYRIYR 117
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNP------ 219
A+ PF HY +H ++L+ ++M+ A + G+HDF++F + R R+ +
Sbjct: 118 AAICSPFLAHYVWHYPWRLDESVMQSATAFIQGEHDFTSFAASDPDRAQRIRDAEDEDGP 177
Query: 220 --VKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQD 277
V++++ G L EV G+GFL+ VRN+V + GK P + + KIL +
Sbjct: 178 SNVRTIYDAVWRTEGHELIFEVRGNGFLHHMVRNLVGTFVDFGKWQHPAESMAKILREKS 237
Query: 278 R 278
R
Sbjct: 238 R 238
>gi|331266815|ref|YP_004326445.1| tRNA pseudouridine synthase A [Streptococcus oralis Uo5]
gi|326683487|emb|CBZ01105.1| tRNA pseudouridine synthase A [Streptococcus oralis Uo5]
Length = 249
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 140/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVILIEIVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M+ A + G HDF+ F D++ ++ D
Sbjct: 120 PKNPLRRHYATHFPYPLDVERMQMAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLSVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG + +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNDRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|255654196|ref|ZP_05399605.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-23m63]
gi|296449765|ref|ZP_06891534.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP08]
gi|296877828|ref|ZP_06901851.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP07]
gi|296261363|gb|EFH08189.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP08]
gi|296431170|gb|EFH16994.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP07]
Length = 243
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 135/249 (54%), Gaps = 10/249 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
++ I Y+G Y GWQ Q IQ +E+A+ +TK E + L+G+ RTD+GVHA GQ+
Sbjct: 5 KITIQYNGKNYCGWQKQLDSLGIQGTIERAIYDITK---EKVSLIGSGRTDSGVHAIGQI 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F T S +ESI ALN LP DI V + +FH+R+SAK K Y Y +YN
Sbjct: 62 ANFKTNSSI-SIESIPMALNAKLPKDISVIDACEVNDDFHSRYSAKGKTYKYLVYNSKFR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
+P +Y Y+L+ M A+ +G HDF F++ + + V++++ D+I
Sbjct: 121 NPILSEISYQVKYELDFDKMCSEAKLLLGTHDFKGFMS--SGSSVKDTVRTIYDIDIIRK 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L+ E+ G+GFLY VR +V L+ IG+ I + I + K ++ +AP
Sbjct: 179 DDLITFEISGNGFLYNMVRIIVGTLVDIGRGRINEPFLDIIQS----KTRSRCGHTAPAQ 234
Query: 292 GLCLVEVKY 300
GL L +V Y
Sbjct: 235 GLFLKKVHY 243
>gi|336430376|ref|ZP_08610324.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336018360|gb|EGN48109.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 257
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 141/250 (56%), Gaps = 9/250 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L +AYDGT Y GWQ Q++ +I+ ++ + L T+L +E ++++GASRTD+GVHA+G +A
Sbjct: 6 LTVAYDGTNYHGWQLQSNGISIEEVLNRCL---TELLKEPVQVIGASRTDSGVHAFGNIA 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
F T G + ALN LP DIR+R FH R + K Y Y+I N+ +
Sbjct: 63 VFDTQARMPG-DKFSYALNQRLPEDIRIRGSREVPLTFHPRKTDSIKTYEYRILNEEFPN 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P +R Y++ + L+ M + A++ +G+HDF +F +V N ++ + V++++ +V G
Sbjct: 122 PVKRLYSHFTYLPLDEKKMNEGAKFLIGEHDFKSFCSV--NAQVESTVRTIYSCEVQREG 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
L + + G GFLY VR + L+ +G PP+ V IL ++R +AP G
Sbjct: 180 TELVIRISGGGFLYNMVRIIAGTLMDVGNGKYPPETVADILKAKERTAAGP---TAPARG 236
Query: 293 LCLVEVKYNE 302
L L+ ++ E
Sbjct: 237 LTLISYEFPE 246
>gi|401684088|ref|ZP_10815971.1| tRNA pseudouridine(38-40) synthase [Streptococcus sp. BS35b]
gi|400186393|gb|EJO20605.1| tRNA pseudouridine(38-40) synthase [Streptococcus sp. BS35b]
Length = 249
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 138/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGFAFAGFQRQPHARSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIEIVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M+ A + G HDF+ F D++ ++ D
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQMAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLSVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFSFSGNGFLYKQIRNMVGTLLKIGNNRLPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|282890956|ref|ZP_06299470.1| hypothetical protein pah_c032o038 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175814|ref|YP_004652624.1| tRNA pseudouridine synthase A 2 [Parachlamydia acanthamoebae UV-7]
gi|281499171|gb|EFB41476.1| hypothetical protein pah_c032o038 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336480172|emb|CCB86770.1| tRNA pseudouridine synthase A 2 [Parachlamydia acanthamoebae UV-7]
Length = 254
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 97/256 (37%), Positives = 138/256 (53%), Gaps = 8/256 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
RL+I+YDG R+ GWQ + P+I+ +E L ++ + E + L ASRTD GVHA QV
Sbjct: 5 RLIISYDGGRFLGWQKTSMGPSIEENLENVLHQILQ---EPIILQAASRTDAGVHAHEQV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
+F T D L I +LN LLP DI V + A FH SK Y Y I +
Sbjct: 62 VNFFTEKPID-LNKITNSLNRLLPKDIVVLDAQIAPDHFHPTLDCLSKEYRYYISTGPIQ 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P R YA+H L+ L+++AAE VG HDFSAF N++ ++ + V+ V + E
Sbjct: 121 PPNHRFYAWHCPGHLDKELIKKAAEQLVGTHDFSAFCNLKPSESYTHHVREVLNIQIHET 180
Query: 232 GA-LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
A +V G FLY+ VRN+V L+ +GK + + +P +L+ +DR K ++AP
Sbjct: 181 DAHHFYFQVMGKSFLYKMVRNIVGTLIFVGKGKLRCEDIPLLLSCRDR---TKIGMTAPA 237
Query: 291 HGLCLVEVKYNEEHLR 306
HGL L + Y LR
Sbjct: 238 HGLTLYRLNYANGLLR 253
>gi|406587731|ref|ZP_11062569.1| tRNA pseudouridine synthase A, partial [Streptococcus sp. GMD1S]
gi|404472787|gb|EKA17201.1| tRNA pseudouridine synthase A, partial [Streptococcus sp. GMD1S]
Length = 248
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 140/254 (55%), Gaps = 10/254 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG ++G+Q Q ++Q +EK L+R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYAFSGFQRQPHARSVQEEIEKTLMRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D +E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMD-VEKLRFALDTQSPEDIDVISIKLVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M+ A + G HDF+ F D++ ++ D
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQIAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLSVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DRK LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRK-LA--GPT 234
Query: 288 APPHGLCLVEVKYN 301
A P+GL L E++Y
Sbjct: 235 AAPNGLYLKEIRYE 248
>gi|374993009|ref|YP_004968508.1| pseudouridylate synthase I [Desulfosporosinus orientis DSM 765]
gi|357211375|gb|AET65993.1| pseudouridylate synthase I [Desulfosporosinus orientis DSM 765]
Length = 262
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 138/254 (54%), Gaps = 12/254 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSP--PTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
L +AYDGT Y G+Q Q PTIQ +EK KL +E + + A RTD GVHA GQ
Sbjct: 6 LKLAYDGTNYHGFQRQAEAYGPTIQGTLEKVW---EKLVKEKVAITMAGRTDAGVHALGQ 62
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
+ +F+T S E I A N LLP DIR+ + EF +R+SAK K Y Y+I N +
Sbjct: 63 IVNFMTA-SRIPEEKIPKAFNSLLPKDIRILQAECVPDEFSSRWSAKWKRYDYRIDNKLI 121
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
D F R YA H L LM+QAA G+H+F F + + ++++R V E
Sbjct: 122 PDIFNRLYAAHEPIPLKIDLMQQAALLMEGRHNFKTFAASGGDSKSFE--RTIYRCQVYE 179
Query: 231 M-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
++++ G GFLY VR +V LL++GK P +P+I+A+QDR + + AP
Sbjct: 180 EDNKMIRVSCVGDGFLYHMVRIIVGTLLEVGKGKTLPQKIPEIIASQDRD---RARMIAP 236
Query: 290 PHGLCLVEVKYNEE 303
GL L+ V Y+ E
Sbjct: 237 ARGLTLIHVNYSNE 250
>gi|255974352|ref|ZP_05424938.1| tRNA pseudouridine synthase [Enterococcus faecalis T2]
gi|257088141|ref|ZP_05582502.1| tRNA pseudouridine synthase [Enterococcus faecalis D6]
gi|307278161|ref|ZP_07559243.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0860]
gi|422723100|ref|ZP_16779642.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2137]
gi|424672437|ref|ZP_18109400.1| tRNA pseudouridine synthase A [Enterococcus faecalis 599]
gi|255967224|gb|EET97846.1| tRNA pseudouridine synthase [Enterococcus faecalis T2]
gi|256996171|gb|EEU83473.1| tRNA pseudouridine synthase [Enterococcus faecalis D6]
gi|306505150|gb|EFM74338.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0860]
gi|315026898|gb|EFT38830.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2137]
gi|402355807|gb|EJU90568.1| tRNA pseudouridine synthase A [Enterococcus faecalis 599]
Length = 246
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 141/250 (56%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDG RY+GWQ S TIQ +E L T++ E + ++G+ RTD G HA GQ
Sbjct: 5 KLTIEYDGKRYSGWQRLGNSEKTIQGKIESIL---TQMTGEPIEIIGSGRTDAGTHARGQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T S E + + LN LP DI V+E++ FHAR++A K Y Y ++N +
Sbjct: 62 VANFKTTSSLTTTEML-SFLNRYLPGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSPI 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
+ F+R++++H L+ M QA + +G HDF F +++N + + +++ + +
Sbjct: 121 PNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKNKK--STTRTIEKITIER 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G +LQ G+GFL++ VR +V LL+IG I+ ++ AT+ R+ + +AP
Sbjct: 179 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGE---TAPA 235
Query: 291 HGLCLVEVKY 300
GL L EV Y
Sbjct: 236 QGLFLDEVYY 245
>gi|168187780|ref|ZP_02622415.1| tRNA pseudouridine synthase A [Clostridium botulinum C str. Eklund]
gi|169294335|gb|EDS76468.1| tRNA pseudouridine synthase A [Clostridium botulinum C str. Eklund]
Length = 246
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 144/250 (57%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+LVI YDG+ Y+GWQ Q T+Q +E+A+ +TK +++ ++G SRTD GVHA V
Sbjct: 6 KLVIEYDGSNYSGWQKQKHSMTVQQRIEEAIFDITK---QNIEIIGCSRTDAGVHARNFV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVP-EFHARFSAKSKIYHYKIYNDAV 170
A+FI S E A+N LP DI +++ S VP +FHARF +K K Y Y I N
Sbjct: 63 ANFIID-SNIPPEKFKYAINSKLPKDIVIKK-SCEVPIDFHARFQSKGKKYVYTILNREE 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
R YH KL+ LM+ A++YF+G H+F +F + + + +++++ DV +
Sbjct: 121 PPTIDRGVVYHFNKKLDVDLMKSASKYFIGSHEFDSFYK-KAGSSVKSTLRTIYYCDVTK 179
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+ ++++ V G GFLY VR M L+++G I P+ + I+ +DR+ + S PP
Sbjct: 180 VDDIIKIIVIGEGFLYNMVRIMAGTLVEVGITRIKPEDIKTIILAKDRERAGR---SLPP 236
Query: 291 HGLCLVEVKY 300
GLCL EV Y
Sbjct: 237 QGLCLEEVLY 246
>gi|417934521|ref|ZP_12577841.1| tRNA pseudouridine synthase A [Streptococcus mitis bv. 2 str.
F0392]
gi|340771091|gb|EGR93606.1| tRNA pseudouridine synthase A [Streptococcus mitis bv. 2 str.
F0392]
Length = 249
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GRAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIEIVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFR--FD 227
+P +RHYA H Y L+ M+ A + G HDF+ F + N V+++
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQAAIKKLEGTHDFTGF--TASGTSVENKVRTITEASLS 177
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V E G L G+GFLY+Q+RNMV +L+IG +P + + IL +DR +LA +
Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTMLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|422410882|ref|ZP_16487843.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL F2-208]
gi|313606591|gb|EFR83384.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL F2-208]
Length = 248
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 141/253 (55%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I YDG+ + G+Q Q + T+Q +EKAL ++ K + +R+ + RTDTGVHA G
Sbjct: 3 RYKAIITYDGSGFYGYQVQPNTRTVQAEIEKALTKMHK--GKTVRITASGRTDTGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + E AL + P DI + +FHARF K Y Y +
Sbjct: 61 QVIHFDSDLDITA-EKFQKALQVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRTK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ DPF R++A H Y+L+ + M+ A++ +GKHDF++F + R +R + V++++ D
Sbjct: 120 IFDPFSRNFALHYPYELDISKMKLASKRLIGKHDFTSFCSA-RTER-DSKVRTLYSIDFY 177
Query: 230 EM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E L + +G+GFLY VR + LL G+ I PD + K L +DR++L + +A
Sbjct: 178 EEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISKALLARDRQKLI--SKTA 235
Query: 289 PPHGLCLVEVKYN 301
PP GL L V Y
Sbjct: 236 PPQGLYLWRVDYE 248
>gi|148997657|ref|ZP_01825221.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP11-BS70]
gi|168575203|ref|ZP_02721166.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae MLV-016]
gi|194397044|ref|YP_002038227.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae G54]
gi|307068239|ref|YP_003877205.1| pseudouridylate synthase [Streptococcus pneumoniae AP200]
gi|417698994|ref|ZP_12348165.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41317]
gi|418148975|ref|ZP_12785737.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13856]
gi|419453753|ref|ZP_13993723.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae EU-NP03]
gi|419491511|ref|ZP_14031249.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47179]
gi|419504350|ref|ZP_14044018.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47760]
gi|419506495|ref|ZP_14046156.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA49194]
gi|419532811|ref|ZP_14072326.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47794]
gi|421275324|ref|ZP_15726153.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA52612]
gi|421314488|ref|ZP_15765075.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47562]
gi|238690845|sp|B5E6N8.1|TRUA_STRP4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|147756156|gb|EDK63198.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP11-BS70]
gi|183578806|gb|EDT99334.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae MLV-016]
gi|194356711|gb|ACF55159.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae G54]
gi|306409776|gb|ADM85203.1| Pseudouridylate synthase [Streptococcus pneumoniae AP200]
gi|332199640|gb|EGJ13715.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41317]
gi|353811311|gb|EHD91553.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13856]
gi|379592873|gb|EHZ57688.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47179]
gi|379605331|gb|EHZ70082.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47794]
gi|379605738|gb|EHZ70488.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47760]
gi|379608409|gb|EHZ73155.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA49194]
gi|379625823|gb|EHZ90449.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae EU-NP03]
gi|395873288|gb|EJG84380.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA52612]
gi|395913173|gb|EJH24026.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47562]
Length = 249
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 141/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q+ ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQSHARSVQEEIEKTLTRLNK--GQTITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFILDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P +RHYA H Y L+ M+ A + G HDF+ F + + V+++ +I
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGF--TASGTSVEDKVRTITEASLI 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|339441705|ref|YP_004707710.1| pseudouridylate synthase [Clostridium sp. SY8519]
gi|338901106|dbj|BAK46608.1| pseudouridylate synthase [Clostridium sp. SY8519]
Length = 250
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 135/254 (53%), Gaps = 9/254 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ RL +AYDGT Y GWQ Q + PTI+ ++KAL L +D+RL GASRTD GVH+ G
Sbjct: 3 RIRLKVAYDGTNYCGWQIQKNGPTIEGELQKAL---KSLLGQDVRLTGASRTDAGVHSQG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
+A F T + ALN LP DI V + ++H R K Y Y+I N
Sbjct: 60 NIAVFDTEAKMPA-DKYAVALNQRLPEDIAVTDSCCVPGDWHPRHCESVKTYEYRILNRR 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
DP +R Y L+ MRQAA G HDF +F +V + ++ V++++ V
Sbjct: 119 YPDPNRRLNTYFYYRPLDLEAMRQAAAALEGTHDFRSFCSV--HAQVETTVRTLYSCRVD 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
++ + V GSGFLY VR + L+++G + D VP ILA DR+ K +AP
Sbjct: 177 RREDVVTIRVSGSGFLYNMVRIIAGTLIRVGSGQMAADAVPGILAACDRE---KAGPTAP 233
Query: 290 PHGLCLVEVKYNEE 303
P GL ++ + Y +E
Sbjct: 234 PQGLTMIGIDYPQE 247
>gi|320101703|ref|YP_004177294.1| tRNA pseudouridine synthase A [Isosphaera pallida ATCC 43644]
gi|319748985|gb|ADV60745.1| tRNA pseudouridine synthase A [Isosphaera pallida ATCC 43644]
Length = 275
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 134/249 (53%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L++AYDGT ++GWQ Q T+Q +VE AL +T E + + + RTD GVHA GQV
Sbjct: 6 KLILAYDGTEFSGWQRQPGHRTVQEVVESALRPLTG---EPVAVTASGRTDAGVHALGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
AHF T + E ALN LPPD+RV A FHA A+SK Y Y I N
Sbjct: 63 AHFHT-IARHPPEVFLKALNATLPPDVRVVWAEEAPQSFHATLDAQSKRYRYVIDNGPFA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
DPF R A+H L+ M +A + G+HDF +F N ++ V+++ V +
Sbjct: 122 DPFLRRTAWHLFRPLDAPRMNRAVQALRGRHDFRSFETNWPNR--MSSVRTILDVQVRRI 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
++LEVE GFLY VR++ + +G P V ++L QDR+ +APP
Sbjct: 180 DHRVELEVEADGFLYNMVRSIAGTAVLVGLGDRPETFVAEVLHAQDRRLAGP---TAPPQ 236
Query: 292 GLCLVEVKY 300
GL L++V+Y
Sbjct: 237 GLFLLQVRY 245
>gi|406939853|gb|EKD72790.1| hypothetical protein ACD_45C00586G0004 [uncultured bacterium]
Length = 259
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 98/256 (38%), Positives = 144/256 (56%), Gaps = 17/256 (6%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I Y G + GWQ Q + T+Q +EKAL +V E ++L A RTDTGVHA+GQVA
Sbjct: 5 LGIEYHGHHFFGWQVQQNLLTVQGCLEKALSQVAD---EPIKLFCAGRTDTGVHAYGQVA 61
Query: 113 HFITPFSYDGLESIHA---ALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
HF T + + S+ A +N LP +I V+ +FHARFSA S+ Y Y IYNDA
Sbjct: 62 HFDT----NAVRSLRAWVLGVNTYLPNEIAVKWAKEVDGQFHARFSALSRCYRYVIYNDA 117
Query: 170 VMDP-FQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
F +H ++ Y LN M +A EY +G+ DFS+F + + + + ++ V +V
Sbjct: 118 TRSALFAKHTTWYR-YSLNIEWMHKAGEYLLGEQDFSSFRSAECESK--SSMRHVEFMNV 174
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
G + LE++ + FL+ VRN+ +LL IG P+ + +IL +DR + A+ +A
Sbjct: 175 TRQGDFVILEIQANAFLHHMVRNIAGVLLCIGSGLRQPEWMQEILQAKDRTQAAE---TA 231
Query: 289 PPHGLCLVEVKYNEEH 304
P GL L +V Y EE+
Sbjct: 232 SPTGLYLYKVNYPEEY 247
>gi|171777516|ref|ZP_02919238.1| hypothetical protein STRINF_00067 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|379704648|ref|YP_005203107.1| tRNA pseudouridylate synthase I [Streptococcus infantarius subsp.
infantarius CJ18]
gi|171283226|gb|EDT48650.1| tRNA pseudouridine synthase A [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|374681347|gb|AEZ61636.1| tRNA pseudouridylate synthase I [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 249
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 146/255 (57%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q S ++Q +EK L R+ + +++ GA RTD+GVHA+G
Sbjct: 3 RYKATISYDGRLFAGFQRQPSERSVQEELEKTLQRLN--SGQPVKVHGAGRTDSGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + D +E + L+ P DI V ++ +FH+R++ SK Y + + +
Sbjct: 61 QVVHFDLPQARD-VEKLRFGLDTQSPEDIDVVKVELVSDDFHSRYNKHSKTYEFLVDSGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFR--FD 227
+P RHYA H Y L+ LM++A + VG HDF+ F + N V+++ R D
Sbjct: 120 PKNPMMRHYATHYPYPLDLALMQEAIKDLVGTHDFTGF--TASGTSVENKVRTITRATVD 177
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ E G+GFLY+QVRNMV LL+IG +P + +LA+++R +LA +
Sbjct: 178 IDEKTGFFVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQIKTVLASKNR-DLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E+ Y+E
Sbjct: 235 AAGNGLYLKEIIYDE 249
>gi|417793117|ref|ZP_12440402.1| tRNA pseudouridine synthase A [Streptococcus oralis SK255]
gi|334274115|gb|EGL92443.1| tRNA pseudouridine synthase A [Streptococcus oralis SK255]
Length = 249
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVILIDIVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M+ A + G HDF+ F D++ ++ D
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQMAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLTVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|366166284|ref|ZP_09466039.1| tRNA pseudouridine synthase A [Acetivibrio cellulolyticus CD2]
Length = 245
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 143/250 (57%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+LVI YDG++Y GWQ S TIQ +E+ L +++ E + L+G+ RTD GVHA+ Q
Sbjct: 5 KLVIQYDGSKYRGWQRLGDSDKTIQGKLEQVL---SQMSNEKIELIGSGRTDAGVHAFKQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T S +++ L LP DI V + FH+R K K Y Y+I+N
Sbjct: 62 VANFHTK-SDLAEDAMLDYLYKYLPEDIVVIDAEEVDNMFHSRHHVKGKKYLYRIWNAKR 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
+PF R + H L+ LMR AAE+F G HDFS+F +++ ++ + + +F ++ +
Sbjct: 121 HNPFMRKHCTHIAEPLDIRLMRNAAEHFTGMHDFSSFTSLKTKNK--SKEREIFSVEIEK 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
++ + G+GFLY R M L+++G I D +PKILA +DRK LA +AP
Sbjct: 179 ENEIMDIVFYGNGFLYNMARIMAGTLIEVGAGRINADNIPKILAKKDRK-LA--GPTAPT 235
Query: 291 HGLCLVEVKY 300
+GL L +V+Y
Sbjct: 236 NGLILYDVEY 245
>gi|406577302|ref|ZP_11052916.1| tRNA pseudouridine synthase A [Streptococcus sp. GMD6S]
gi|404460147|gb|EKA06428.1| tRNA pseudouridine synthase A [Streptococcus sp. GMD6S]
Length = 249
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L+R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGFAFAGFQRQPHARSVQEEIEKTLMRLNK--GQAIAVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIEIVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M+ A + G HDF+ F D++ ++ D
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQIAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLTVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFSFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|220903970|ref|YP_002479282.1| tRNA pseudouridine synthase A [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219868269|gb|ACL48604.1| tRNA pseudouridine synthase A [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 259
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 143/265 (53%), Gaps = 18/265 (6%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSP---PTIQCIVEKALIRVTKLEREDLRLVGASRTDTGV 105
+ +L+I+Y GT Y+GWQ Q P PT+Q +E AL + + +R+ G+ RTD+GV
Sbjct: 1 MRLKLLISYVGTGYSGWQIQEKPKPPPTVQGALEAALRTIAG---KAVRVHGSGRTDSGV 57
Query: 106 HAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKI 165
HA GQVAH P + GL+ H+ LN +LP DIRV + S A P+FHAR A K Y Y+
Sbjct: 58 HAHGQVAHCDIPDTRAGLDWRHS-LNAVLPRDIRVLDASPAAPDFHARKDALRKTYAYQF 116
Query: 166 YND-AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF 224
+ D + P R Y + + L+ MR A + +G+HDF+ N +
Sbjct: 117 WQDRRFLPPHVRPYVW-NCGMLDLDAMRDALPFLLGRHDFAGLRNAGTDVESTERTIMDA 175
Query: 225 RFDVIE-------MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQD 277
R D + +L+L + GFL + VRN+ LL G+ I P +P +LA +D
Sbjct: 176 RLDALAPCEYYPPHAPMLRLTITADGFLKQMVRNVAGLLAACGQGKIQPAQIPALLAARD 235
Query: 278 RKELAKYALSAPPHGLCLVEVKYNE 302
R+ + +++APP GL LV VKY E
Sbjct: 236 RQAVP--SVTAPPEGLALVSVKYPE 258
>gi|116628993|ref|YP_814165.1| tRNA pseudouridine synthase A [Lactobacillus gasseri ATCC 33323]
gi|238853452|ref|ZP_04643830.1| tRNA pseudouridine synthase A [Lactobacillus gasseri 202-4]
gi|420147704|ref|ZP_14654979.1| Pseudouridine synthase [Lactobacillus gasseri CECT 5714]
gi|116094575|gb|ABJ59727.1| Pseudouridylate synthase [Lactobacillus gasseri ATCC 33323]
gi|238833892|gb|EEQ26151.1| tRNA pseudouridine synthase A [Lactobacillus gasseri 202-4]
gi|398400851|gb|EJN54382.1| Pseudouridine synthase [Lactobacillus gasseri CECT 5714]
Length = 264
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 146/255 (57%), Gaps = 9/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++L +AYDG + G+Q Q + T+Q ++E+AL ++TK +R + + G+ RTD GVHA G
Sbjct: 5 RYKLTMAYDGHLFHGFQIQPNERTVQGVIEEALKKMTKGKR--VVVHGSGRTDAGVHAKG 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P +++ ALN L+P D + +FH ++S K K Y Y +
Sbjct: 63 QVIHFDYPGKEIPAKNMMLALNALMPIDTVFFDSEIVDSDFHVQYSTKGKWYRYIVDQHR 122
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
DPF R Y H Y L+ LM++AA+ +G+HDF++F ++++ V++++ ++
Sbjct: 123 FTDPFNRFYTGHYPYPLDIALMKKAAKDLIGEHDFTSF--AASGGQIVDKVRTIYYVNIT 180
Query: 230 E--MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ + G+GFLY VR +V LL+IG + P D +P++LA +DR+E+ +
Sbjct: 181 SDPDNKKIIFDFIGNGFLYNMVRILVGTLLEIGNKKRPVDDIPRVLAAKDRQEV---RTT 237
Query: 288 APPHGLCLVEVKYNE 302
AP GL L V Y E
Sbjct: 238 APASGLYLQHVFYEE 252
>gi|311111209|ref|ZP_07712606.1| tRNA pseudouridine synthase A [Lactobacillus gasseri MV-22]
gi|311066363|gb|EFQ46703.1| tRNA pseudouridine synthase A [Lactobacillus gasseri MV-22]
Length = 263
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 146/255 (57%), Gaps = 9/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++L +AYDG + G+Q Q + T+Q ++E+AL ++TK +R + + G+ RTD GVHA G
Sbjct: 4 RYKLTMAYDGHLFHGFQIQPNERTVQGVIEEALKKMTKGKR--VVVHGSGRTDAGVHAKG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P +++ ALN L+P D + +FH ++S K K Y Y +
Sbjct: 62 QVIHFDYPGKEIPAKNMMLALNALMPIDTVFFDSEIVDSDFHVQYSTKGKWYRYIVDQHR 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
DPF R Y H Y L+ LM++AA+ +G+HDF++F ++++ V++++ ++
Sbjct: 122 FTDPFNRFYTGHYPYPLDIALMKKAAKDLIGEHDFTSF--AASGGQIVDKVRTIYYVNIT 179
Query: 230 E--MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ + G+GFLY VR +V LL+IG + P D +P++LA +DR+E+ +
Sbjct: 180 SDPDNKKIIFDFIGNGFLYNMVRILVGTLLEIGNKKRPVDDIPRVLAAKDRQEV---RTT 236
Query: 288 APPHGLCLVEVKYNE 302
AP GL L V Y E
Sbjct: 237 APASGLYLQHVFYEE 251
>gi|258513673|ref|YP_003189895.1| tRNA pseudouridine synthase A [Desulfotomaculum acetoxidans DSM
771]
gi|257777378|gb|ACV61272.1| tRNA pseudouridine synthase A [Desulfotomaculum acetoxidans DSM
771]
Length = 250
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 138/255 (54%), Gaps = 10/255 (3%)
Query: 48 GFKWRLVIAYDGTRYAGWQFQTSP--PTIQCIVEKALIRVTKLEREDLRLVGASRTDTGV 105
G ++++AYDGT Y G+Q Q PTIQ ++++ L + L +E + + A RTD+GV
Sbjct: 4 GRNIKVILAYDGTNYHGFQIQKGKRLPTIQGVLQREL---SHLAKETITVTTAGRTDSGV 60
Query: 106 HAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKI 165
HA GQV +F T ++ + ALN +LPPDIR FHAR+SA +K Y Y I
Sbjct: 61 HARGQVFNFFTGNWQIPVDRVIYALNSVLPPDIRALSAEEVDLGFHARYSALAKTYCYYI 120
Query: 166 YNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFR 225
D ++ PF R Y+Y Y L+ MRQA + G+HDF +F + + + ++++++
Sbjct: 121 SRDQIVSPFTRLYSYQYNYPLDLDDMRQAVLHITGEHDFKSF--MASGSLVKSTIRTIYQ 178
Query: 226 FDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
D+IE +L G+GFLY VR + LLQ+G I + IL DRK
Sbjct: 179 IDLIEKDKMLIFTFRGNGFLYHMVRIITGTLLQVGTGKIHYSEIETILKKCDRKSAGA-- 236
Query: 286 LSAPPHGLCLVEVKY 300
+ P GL L V+Y
Sbjct: 237 -TVPALGLFLERVEY 250
>gi|290891783|ref|ZP_06554780.1| truA protein [Listeria monocytogenes FSL J2-071]
gi|404408978|ref|YP_006691693.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC2376]
gi|290558377|gb|EFD91894.1| truA protein [Listeria monocytogenes FSL J2-071]
gi|404243127|emb|CBY64527.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC2376]
Length = 248
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 142/253 (56%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG+ + G+Q Q + T+Q +EKAL ++ K + +R+ + RTDTGVHA G
Sbjct: 3 RYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMNK--GKTVRVTASGRTDTGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + E AL + P DI + +FHARF K Y Y +
Sbjct: 61 QVIHFDSELDITA-EKFQKALQVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRTK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ DPF R++A H Y+L+ + M+ A++ +G+HDF++F + R +R + V++++ D
Sbjct: 120 IFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSA-RTER-DSKVRTLYSIDFY 177
Query: 230 EM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E L + +G+GFLY VR + LL G+ I PD + K L +DR++L + +A
Sbjct: 178 EEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISKALLARDRQKLI--SKTA 235
Query: 289 PPHGLCLVEVKYN 301
PP GL L V Y
Sbjct: 236 PPQGLYLWRVDYE 248
>gi|322392372|ref|ZP_08065833.1| tRNA pseudouridine synthase A [Streptococcus peroris ATCC 700780]
gi|321144907|gb|EFX40307.1| tRNA pseudouridine synthase A [Streptococcus peroris ATCC 700780]
Length = 249
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 140/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ VI+YDG +AG+Q Q ++Q +EK L R+ K + + GA RTD+GVHA G
Sbjct: 3 RYKAVISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GLGVTIHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ + E + AL+ P DI V + +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMEE-EKLRFALDTQSPEDIDVISVEIVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M++A + G HDF+ F D++ ++ + D
Sbjct: 120 PKNPMRRHYATHYPYPLDVERMQKAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLKVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPIEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|417923706|ref|ZP_12567163.1| tRNA pseudouridine synthase A [Streptococcus mitis SK569]
gi|342836588|gb|EGU70799.1| tRNA pseudouridine synthase A [Streptococcus mitis SK569]
Length = 249
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L ++ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTKLNK--GQAVTVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFVVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M+ A + G HDF+ F D++ ++ R D
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLRVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|422699954|ref|ZP_16757812.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1342]
gi|422734009|ref|ZP_16790307.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1341]
gi|315169224|gb|EFU13241.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1341]
gi|315171531|gb|EFU15548.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1342]
Length = 277
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 141/250 (56%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDG RY+GWQ S TIQ +E L ++T E + ++G+ RTD G HA GQ
Sbjct: 36 KLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTG---EPIEIIGSGRTDAGTHARGQ 92
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T S E + + LN LP DI V+E++ FHAR++A K Y Y ++N +
Sbjct: 93 VANFKTTSSLTTTEML-SFLNRYLPGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSPI 151
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
+ F+R++++H L+ M QA + +G HDF F +++N + + +++ + +
Sbjct: 152 PNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKNKK--STTRTIEKITIER 209
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G +LQ G+GFL++ VR +V LL+IG I+ ++ AT+ R+ + +AP
Sbjct: 210 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGE---TAPA 266
Query: 291 HGLCLVEVKY 300
GL L EV Y
Sbjct: 267 QGLFLDEVYY 276
>gi|225857220|ref|YP_002738731.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae P1031]
gi|444411443|ref|ZP_21207857.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0076]
gi|444412740|ref|ZP_21209059.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0153]
gi|444423452|ref|ZP_21219057.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0446]
gi|254764871|sp|C1CLU3.1|TRUA_STRZP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|225725422|gb|ACO21274.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae P1031]
gi|444272522|gb|ELU78222.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0076]
gi|444273979|gb|ELU79634.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0153]
gi|444286928|gb|ELU91879.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0446]
Length = 249
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 141/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q+ ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQSHARSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQIDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P +RHYA H Y L+ M+ A + G HDF+ F + + V+++ +I
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGF--TASGTSVEDKVRTITEASLI 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIALILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|418115125|ref|ZP_12752111.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 5787-06]
gi|419495783|ref|ZP_14035500.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47461]
gi|421207042|ref|ZP_15664094.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2090008]
gi|421230217|ref|ZP_15686881.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2061376]
gi|421292485|ref|ZP_15743219.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA56348]
gi|421302931|ref|ZP_15753595.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17484]
gi|421312419|ref|ZP_15763021.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA58981]
gi|353785209|gb|EHD65628.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 5787-06]
gi|379593869|gb|EHZ58680.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47461]
gi|395574378|gb|EJG34956.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2090008]
gi|395593743|gb|EJG53985.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2061376]
gi|395891792|gb|EJH02786.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA56348]
gi|395901553|gb|EJH12489.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17484]
gi|395909273|gb|EJH20149.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA58981]
Length = 249
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 141/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q+ ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQSHARSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQIDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P +RHYA H Y L+ M+ A + G HDF+ F + + V+++ +I
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGF--TASGTSVEDKVRTITEASLI 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|450035792|ref|ZP_21835197.1| tRNA pseudouridine synthase A [Streptococcus mutans M21]
gi|450111953|ref|ZP_21862949.1| tRNA pseudouridine synthase A [Streptococcus mutans SM6]
gi|449195007|gb|EMB96344.1| tRNA pseudouridine synthase A [Streptococcus mutans M21]
gi|449223157|gb|EMC22861.1| tRNA pseudouridine synthase A [Streptococcus mutans SM6]
Length = 249
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 143/255 (56%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDGT ++G+Q Q T+Q +EK L+R+ + +++ GA RTD GVHA+G
Sbjct: 3 RYKAIISYDGTNFSGFQRQPQMRTVQEEIEKTLLRLN--SGQAVKVHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + L+ P DI V ++ +FHAR+ K Y + +
Sbjct: 61 QVIHFDLPQQRD-LEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHRKTYEFLVDLGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P RHYA H YK++ ++++ A + G HDF+ F + N V+++ R V
Sbjct: 120 PKNPLMRHYATHFPYKVDFSVVKAAIKKLRGTHDFTGF--TASGTSVENKVRTISRATVE 177
Query: 230 EMG--ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ G L GSGFLY+QVRNMV LL+IG +P D + +IL + DR LA +
Sbjct: 178 KDGKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDR-SLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E+ Y++
Sbjct: 235 AASNGLYLKEIIYDD 249
>gi|315283801|ref|ZP_07871873.1| tRNA pseudouridine synthase A [Listeria marthii FSL S4-120]
gi|313612551|gb|EFR86621.1| tRNA pseudouridine synthase A [Listeria marthii FSL S4-120]
Length = 248
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 141/253 (55%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG+ + G+Q Q + T+Q +EKAL ++ K + +R+ + RTDTGVHA G
Sbjct: 3 RYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALKKMHK--GKSVRITASGRTDTGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + E AL + P DI + +FHARF K Y Y +
Sbjct: 61 QVIHFDSELDITA-EKFQKALQVMTPFDISFLRVEEVADDFHARFGTVGKEYRYVVKRTK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
V DPF R++A H Y+LN M+ A+E +G+HDF++F + R +R + V++++ D
Sbjct: 120 VFDPFSRNFALHYPYELNLAKMKLASERLIGEHDFTSFCSA-RTER-DSKVRTLYSIDFY 177
Query: 230 EM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E L + +G+GFLY VR + LL G+ I P+ + + L +DR++L + +A
Sbjct: 178 EEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPEEITEALLARDRQKLI--SKTA 235
Query: 289 PPHGLCLVEVKYN 301
PP GL L V Y
Sbjct: 236 PPQGLYLWRVDYE 248
>gi|421234500|ref|ZP_15691118.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2061617]
gi|421249828|ref|ZP_15706285.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2082239]
gi|395600354|gb|EJG60511.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2061617]
gi|395613522|gb|EJG73550.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2082239]
Length = 249
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 140/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GQTITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVAADFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P +RHYA H Y L+ M+ A + G HDF+ F + + V+++ +I
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGF--TASGTSVEDKVRTITEASLI 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNCMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|158319577|ref|YP_001512084.1| tRNA pseudouridine synthase A [Alkaliphilus oremlandii OhILAs]
gi|158139776|gb|ABW18088.1| tRNA pseudouridine synthase A [Alkaliphilus oremlandii OhILAs]
Length = 248
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 95/246 (38%), Positives = 140/246 (56%), Gaps = 9/246 (3%)
Query: 55 IAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHF 114
I YDG+ Y+GWQ Q + TIQ + KAL KLE +D+ + G+ RTD GVHA+GQVA F
Sbjct: 8 IEYDGSNYSGWQVQPNAITIQEEIMKAL---KKLEGKDVVIHGSGRTDAGVHAYGQVATF 64
Query: 115 ITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPF 174
+ + +E + A+N LP DI + + +FHAR+SA K Y Y IY
Sbjct: 65 LMERNIP-VERLPLAMNSNLPKDITIIDAKEVPMDFHARYSAIGKRYIYHIYESRYRSAI 123
Query: 175 QRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGAL 234
R+Y+YH YKL+ + M +A++ +G HDF F++ + + V+++ + G
Sbjct: 124 LRNYSYHINYKLDRSKMMEASKLLIGTHDFRGFMS--NGSSVEDTVRTIKSLEFKSDGEN 181
Query: 235 LQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLC 294
+ + +EG GFLY VR + L+QIG P + + KIL T+DR LA + +APP GL
Sbjct: 182 IYMIIEGDGFLYNMVRIITGTLVQIGAGNKPLEQIEKILKTKDR-SLAGH--TAPPQGLF 238
Query: 295 LVEVKY 300
L +V Y
Sbjct: 239 LDKVFY 244
>gi|309798794|ref|ZP_07693058.1| tRNA pseudouridine synthase A [Streptococcus infantis SK1302]
gi|308117611|gb|EFO55023.1| tRNA pseudouridine synthase A [Streptococcus infantis SK1302]
Length = 249
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 141/256 (55%), Gaps = 12/256 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLER-EDLRLVGASRTDTGVHAW 108
+++ +I+YDG +AG+Q Q P + + E+ I +TKL + + + + GA RTD+GVHA
Sbjct: 3 RYKAIISYDGYAFAGFQRQ---PHARSVQEEIEITLTKLNKGQAITIHGAGRTDSGVHAL 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 60 GQVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIEIVADDFHCRYAKHSKTYEFIVDRG 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRF 226
+P +RHYA H Y L+ M+ A + G HDF+ F D++ ++ R
Sbjct: 119 RPKNPMRRHYATHYPYPLDVERMQLAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLRV 178
Query: 227 DVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
D E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA
Sbjct: 179 D--ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPIEQIDLILEKKDR-QLA--GP 233
Query: 287 SAPPHGLCLVEVKYNE 302
+A P+GL L E++Y E
Sbjct: 234 TAAPNGLYLKEIRYEE 249
>gi|373463259|ref|ZP_09554886.1| tRNA pseudouridine synthase A [Lactobacillus kisonensis F0435]
gi|371764947|gb|EHO53312.1| tRNA pseudouridine synthase A [Lactobacillus kisonensis F0435]
Length = 265
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 148/264 (56%), Gaps = 12/264 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ IAYDGT ++G+Q Q + TI+ ++ + + + K + + + G+ RTD GVHA+G
Sbjct: 3 RYKVTIAYDGTLFSGFQRQPNKRTIEGVLTQKVNLMAKNPQLPIVVYGSGRTDAGVHAFG 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF PF E+I+ LN +LP D+ V ++ P FHAR+ K Y Y++
Sbjct: 63 QVVHFDFPFDLP-TEAIYRGLNSMLPLDMEVMKVETVSPNFHARYDVSGKRYFYRVDLGE 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV----NVQRNDRLLNPVKSVFR 225
++PF+R+Y H + L+ +R A F+G+HDFS+FV + N R + ++
Sbjct: 122 FLNPFKRNYTGHWKFPLDVERVRAALPDFIGEHDFSSFVASGSTAKSNVRTI--YEATAN 179
Query: 226 FDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
FD E LQLE G+GFLY VR MV ++++IG + P + ++ A +DR +
Sbjct: 180 FD--EKANELQLEFYGNGFLYNMVRIMVGVIVEIGAQRRPEHDILRLYAVKDRNQA---R 234
Query: 286 LSAPPHGLCLVEVKYNEEHLRLPA 309
L+ P GL L +V Y E + P
Sbjct: 235 LTMPASGLYLKKVYYEGEDPKHPT 258
>gi|410459899|ref|ZP_11313588.1| tRNA pseudouridine synthase A [Bacillus azotoformans LMG 9581]
gi|409928010|gb|EKN65134.1| tRNA pseudouridine synthase A [Bacillus azotoformans LMG 9581]
Length = 245
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 145/251 (57%), Gaps = 8/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ + IAYDGT ++G+Q Q++ T+Q +EKAL ++ K E++R+ + RTD GVHA G
Sbjct: 3 RLKCTIAYDGTNFSGFQVQSNGRTVQGDIEKALFKLHK--GEEIRIHPSGRTDAGVHAHG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF +P S ++ ALN LLP DI I +FHAR++ K Y Y + N
Sbjct: 61 QVIHFDSPLSIP-VDRYQMALNTLLPDDIVALTIENVNTDFHARYNVVKKEYRYFLLNQK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
D F+++++Y+ Y +N + +A +Y +G HDF++F + + + N V+++ ++
Sbjct: 120 ERDVFRKNHSYYYPYAINLDRIIEATKYLLGAHDFTSFCSTKSDKE--NKVRTIEEIEIW 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ + G+GFLY VR +V LL++G+ + P+ + IL ++RK K +AP
Sbjct: 178 KENNEIVFRFVGNGFLYNMVRIIVGTLLKVGQGKLEPEDIKVILEEKNRKAAGK---TAP 234
Query: 290 PHGLCLVEVKY 300
HGL L +V Y
Sbjct: 235 AHGLHLWKVWY 245
>gi|302390990|ref|YP_003826810.1| tRNA pseudouridine synthase A [Acetohalobium arabaticum DSM 5501]
gi|302203067|gb|ADL11745.1| tRNA pseudouridine synthase A [Acetohalobium arabaticum DSM 5501]
Length = 244
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 145/249 (58%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +IAYDGT Y G+Q Q PTIQ +E++L +TK E +++ A RTD GVHA QV
Sbjct: 5 KAIIAYDGTNYYGFQHQPDVPTIQDELEESLRILTK---EKNKVIVAGRTDRGVHAQNQV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
+F T S LE+I A N LP DI ++E+ +FHAR+ A+ KIY Y+I N +
Sbjct: 62 INFKTE-SPIPLENIRFAWNNCLPNDILIKEVEDVNADFHARYDAEGKIYEYRILNQPLP 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
F+R+Y YH +L++ M +AAE +G +DFS+F N + V+++ + +V +
Sbjct: 121 SVFKRNYTYHIKEELDSAAMAEAAECLIGTYDFSSFQASGSN--VQTTVRTIQQAEVTQQ 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L+ +EG GFLY VR +V L+++G + +I+ +DR LA +AP
Sbjct: 179 DRLVIFRIEGDGFLYNMVRIIVGTLIKVGTGEWEVPRMSRIIEAEDR--LAA-GPTAPAQ 235
Query: 292 GLCLVEVKY 300
GL L++VKY
Sbjct: 236 GLRLIKVKY 244
>gi|449919836|ref|ZP_21798176.1| tRNA pseudouridine synthase A [Streptococcus mutans 1SM1]
gi|449159126|gb|EMB62500.1| tRNA pseudouridine synthase A [Streptococcus mutans 1SM1]
Length = 249
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 143/255 (56%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDGT ++G+Q Q T+Q +EK L+R+ + +++ GA RTD GVHA+G
Sbjct: 3 RYKAIISYDGTNFSGFQRQPQMRTVQEEIEKTLLRLN--SGQAVKIHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + L+ P DI V ++ +FHAR+ K Y + +
Sbjct: 61 QVIHFDLPQQRD-LEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHRKTYEFLVDLGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV- 228
+P RHYA H YK++ ++++ A + G HDF+ F + + N V+++ R V
Sbjct: 120 PKNPLMRHYATHFPYKVDFSVVKAAIKKLRGTHDFTGFTAAGTS--VENKVRTISRATVE 177
Query: 229 -IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E L GSGFLY+QVRNMV LL+IG +P D + +IL + DR LA +
Sbjct: 178 KDEKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDR-SLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E+ Y++
Sbjct: 235 AASNGLYLKEIIYDD 249
>gi|385260248|ref|ZP_10038397.1| tRNA pseudouridine(38-40) synthase [Streptococcus sp. SK140]
gi|385192168|gb|EIF39578.1| tRNA pseudouridine(38-40) synthase [Streptococcus sp. SK140]
Length = 249
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L ++ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTKLNK--GQAITIHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIEIVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M+ A + G HDF+ F D++ ++ R D
Sbjct: 120 PKNPMRRHYATHYPYPLDVERMQLAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLRVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPIEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E++Y E
Sbjct: 235 AASNGLYLKEIRYEE 249
>gi|377809963|ref|YP_005005184.1| tRNA pseudouridine synthase A [Pediococcus claussenii ATCC BAA-344]
gi|361056704|gb|AEV95508.1| tRNA pseudouridine synthase A [Pediococcus claussenii ATCC BAA-344]
Length = 248
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 145/255 (56%), Gaps = 12/255 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ IAYDGT +AG+Q Q + T++ ++ K + ++ K + +++ G+ RTD GVHA G
Sbjct: 2 RYKVTIAYDGTDFAGFQMQPNERTVEGVLTKIVNKIAKNPGKRIQIFGSGRTDAGVHALG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + +HA LN ++P D+ V+++ +FHARF+ K Y Y++
Sbjct: 62 QVVHFDMNTQMNEDNMLHA-LNSMMPLDMSVKKVEIVSEDFHARFTTHGKRYMYRLSLGE 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV----NVQRNDRLLNPVKSVFR 225
+DPF+R Y H + ++ L++ A + G HDFS+FV V+ N R + ++ R
Sbjct: 121 FVDPFKRRYTGHWKFPIDIKLIKAAIKDLEGTHDFSSFVAAGSTVKSNVRTI--YEASVR 178
Query: 226 FDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
FD + + E G+GFLY VR MVA+L++IG + P D +P++ DR E
Sbjct: 179 FD--DATQEIVFEFYGNGFLYNMVRIMVAVLIEIGSKRRPVDDIPRLFQVLDRNEARG-- 234
Query: 286 LSAPPHGLCLVEVKY 300
+AP GL L +V Y
Sbjct: 235 -TAPASGLYLKKVYY 248
>gi|118581782|ref|YP_903032.1| tRNA pseudouridine synthase A [Pelobacter propionicus DSM 2379]
gi|166228745|sp|A1AUF4.1|TRUA_PELPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|118504492|gb|ABL00975.1| tRNA pseudouridine synthase A [Pelobacter propionicus DSM 2379]
Length = 244
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 134/249 (53%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L I YDGT YAGWQ Q + +Q ++E+AL+R+ E +RL + RTD GVHA V
Sbjct: 5 KLTIEYDGTNYAGWQVQPNGLAVQQVLEEALLRLLG---ERVRLRSSGRTDAGVHARAMV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T S L++ N LP DI + + A PEF A+SK Y Y IYN V
Sbjct: 62 ASFTTSRSLP-LQAFVGGANRFLPDDIAILSAAEAAPEFRPIQDARSKWYRYTIYNAPVR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P +R +++H L+T M+ AA +F G+HDF+AF N ++ + +
Sbjct: 121 SPLRRLFSWHVREPLDTDAMQLAAHHFPGRHDFAAF--RASNCAAKTTLRRIDSVTIASE 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G L+ ++V G GFL VR M L+ +G+ P+ V +L DRK K ++AP
Sbjct: 179 GELIVIDVIGEGFLKNMVRVMAGTLVDVGRGRFEPERVAWLLENPDRK---KAGVTAPAC 235
Query: 292 GLCLVEVKY 300
GLCL++V Y
Sbjct: 236 GLCLMDVSY 244
>gi|302871559|ref|YP_003840195.1| tRNA pseudouridine synthase A [Caldicellulosiruptor obsidiansis
OB47]
gi|302574418|gb|ADL42209.1| tRNA pseudouridine synthase A [Caldicellulosiruptor obsidiansis
OB47]
Length = 244
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 136/248 (54%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I YDGT Y GWQ Q + TIQ +E+A + KL E++ L+G+ RTD GVHA Q A
Sbjct: 6 LTIEYDGTGYFGWQKQPNKKTIQGTIEEA---IKKLTGEEVNLIGSGRTDRGVHALNQKA 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T S + ALN +LP DI V++ +F AR+SAK K Y Y IYN
Sbjct: 63 NFKTS-SKIPTDKFPLALNSVLPGDISVKDAIEVSLDFSARYSAKQKTYKYLIYNKKSRP 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
R+YAY+ Y+L+ M++A EYF+G++DF +F +V + V+ ++ +
Sbjct: 122 ALLRNYAYYYPYELDVDAMQRACEYFIGEYDFKSFCSVDSESK--TTVRRIYNAYLTFEN 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ + + +GFLY R + +L +G + P +P I+ ++DR K + PP G
Sbjct: 180 ECIAIYLTANGFLYNMARIIAGTILDVGAGKLKPMDIPLIIESKDRTLAGK---TLPPWG 236
Query: 293 LCLVEVKY 300
L LV+V Y
Sbjct: 237 LYLVDVAY 244
>gi|419442952|ref|ZP_13982979.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13224]
gi|379551652|gb|EHZ16746.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13224]
Length = 249
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 140/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFTVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P +RHYA H Y L+ M+ A + G HDF+ F + + V+++ +I
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGF--TASGTSVEDKVRTITEASLI 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIALILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|268318882|ref|YP_003292538.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii FI9785]
gi|262397257|emb|CAX66271.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii FI9785]
Length = 263
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 146/255 (57%), Gaps = 9/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++L +AYDG + G+Q Q + T+Q ++E+AL ++TK +R + + G+ RTD GVHA G
Sbjct: 4 RYKLTMAYDGHLFHGFQIQPNERTVQGVIEEALKKMTKGKR--VVVHGSGRTDAGVHAKG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P +++ ALN L+P D E +FH ++S K K Y Y +
Sbjct: 62 QVIHFDYPGKEIPAKNMMLALNALMPIDTVFFESEIVDEDFHVQYSTKGKWYRYVVDQHR 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
DPF R Y H Y L+ +LM+QAA +G+HDF++F ++++ V++++ ++
Sbjct: 122 FTDPFNRFYTGHYPYPLDISLMQQAARDLIGEHDFTSF--AASGGQIVDKVRTIYYVNIT 179
Query: 230 EMGALLQL--EVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
Q+ + G+GFLY VR +V LL+IG + P D +P++L +DR+E+ +
Sbjct: 180 PDPDKKQIIFDFIGNGFLYNMVRILVGTLLEIGNQKRPVDDIPRVLKAKDRQEVRT---T 236
Query: 288 APPHGLCLVEVKYNE 302
AP GL L V Y +
Sbjct: 237 APASGLYLQHVFYED 251
>gi|302388052|ref|YP_003823874.1| tRNA pseudouridine synthase A [Clostridium saccharolyticum WM1]
gi|302198680|gb|ADL06251.1| tRNA pseudouridine synthase A [Clostridium saccharolyticum WM1]
Length = 341
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 128/227 (56%), Gaps = 6/227 (2%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
++++AYDGT Y GWQ Q + TI+ ++ K L T L +E + ++GASRTD+GVH+ G V
Sbjct: 5 KMIVAYDGTNYCGWQIQNNGITIEEVLNKEL---TSLLKEPITVIGASRTDSGVHSEGNV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T + I ALN LP DIR+ + P++H R K Y YKI N +
Sbjct: 62 AVFDTENRMPA-DKICFALNQRLPDDIRILQSQEVRPDYHPRKQNCVKTYEYKIMNRKIE 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P R Y+Y + L+ MR+ Y VG+HDF +F + + V++++ D+ +
Sbjct: 121 VPTLRLYSYFCYFPLDVERMREGGAYLVGEHDFKSFCTAR--GQAEETVRTIYSLDIEKS 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDR 278
G L+ + ++GSGFLY VR + L+++G PP V +IL +DR
Sbjct: 179 GDLITIRIKGSGFLYNMVRIIAGTLMKVGMGVYPPSHVEEILDARDR 225
>gi|421243519|ref|ZP_15700033.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2081074]
gi|395606739|gb|EJG66841.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2081074]
Length = 249
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 140/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQPHSRSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFTVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P +RHYA H Y L+ M+ A + G HDF+ F + + V+++ +I
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGF--TASGTSVEDKVRTITEASLI 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|423619896|ref|ZP_17595727.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD115]
gi|401250584|gb|EJR56878.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD115]
Length = 245
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 139/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG RY GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARYKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFKSDEKLVE-HKVKKYLNQYLPNDISITNVEEVPDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R ++ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +V
Sbjct: 120 HTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSHDFTAFSNAKSKKKSM--VREVYMLEVS 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + + IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAILNILEEKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L +++
Sbjct: 235 ASGLYLESIEF 245
>gi|239623391|ref|ZP_04666422.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522357|gb|EEQ62223.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 247
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 144/253 (56%), Gaps = 10/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ RLV+AYDGT Y GWQ Q TI+ + +AL T L E ++++GASRTD+GVHA G
Sbjct: 3 RVRLVVAYDGTHYHGWQIQPGKVTIESRLNEAL---TSLLGEPVQVIGASRTDSGVHARG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
VA F T + I ALN LP DIRV+ P++H R K Y Y+I N
Sbjct: 60 NVAVFDTSHRMPA-DRICMALNQRLPEDIRVQSSEEVDPDWHPRKCRCVKTYEYRILNRR 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ P QR Y++ + L+ M++AA VG+HDF +F +V+ ++ + V++++ +V
Sbjct: 119 IEMPMQRFYSHFCYFNLDLEKMQKAAGLLVGEHDFKSFCSVR--TQVTDTVRTIYSIEVK 176
Query: 230 -EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ ++ + V G+GFLY VR + L+ +G I P+ + IL +DR+ +A
Sbjct: 177 RDEEDMIGIRVTGNGFLYNMVRIIAGTLMAVGMGQIAPEDMGAILEARDRRAAGP---TA 233
Query: 289 PPHGLCLVEVKYN 301
P GL L++++Y+
Sbjct: 234 PARGLTLIQMEYD 246
>gi|58336660|ref|YP_193245.1| tRNA pseudouridine synthase A [Lactobacillus acidophilus NCFM]
gi|227903218|ref|ZP_04021023.1| tRNA pseudouridine synthase A [Lactobacillus acidophilus ATCC 4796]
gi|62901152|sp|Q5FM60.1|TRUA_LACAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|58253977|gb|AAV42214.1| tRNA pseudouridine synthase A [Lactobacillus acidophilus NCFM]
gi|227869023|gb|EEJ76444.1| tRNA pseudouridine synthase A [Lactobacillus acidophilus ATCC 4796]
Length = 262
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 146/255 (57%), Gaps = 9/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ +AYDG + G+Q Q T+Q VE AL ++TK +R + + G+ RTD GVHA G
Sbjct: 4 RYKMTMAYDGHLFHGFQLQPDQRTVQGTVEDALKKMTKGKR--IIVQGSGRTDAGVHAIG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + ALN ++P DI + +FHAR+S K K Y Y++ D
Sbjct: 62 QVIHFDYPGKEIPANRMILALNSMMPTDIVFTDCQIVDEDFHARYSIKGKWYRYRLSLDY 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
++PF+R Y H Y+L+ MR AA+ +GKHDF++F ++ + V++++ ++
Sbjct: 122 FVNPFKRFYTGHFPYQLDLEKMRIAAQDLLGKHDFTSF--AASGGQIKDKVRTIYYINIT 179
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E + + GSGFLY VR MVA LL+IG E P + +++A +DR+E+ + +
Sbjct: 180 KDEKENEIVFDFIGSGFLYNMVRIMVAALLEIGNERRPLHDLRRVIAAKDRQEVRQ---T 236
Query: 288 APPHGLCLVEVKYNE 302
A GL L V Y+E
Sbjct: 237 AQGSGLYLYHVFYDE 251
>gi|410582551|ref|ZP_11319657.1| pseudouridylate synthase I [Thermaerobacter subterraneus DSM 13965]
gi|410505371|gb|EKP94880.1| pseudouridylate synthase I [Thermaerobacter subterraneus DSM 13965]
Length = 345
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/251 (37%), Positives = 139/251 (55%), Gaps = 9/251 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
R V+AYDGT +AGWQ Q T+Q +VE+AL ++L +R+ A RTD GVHA QV
Sbjct: 86 RAVLAYDGTDFAGWQRQAGRRTVQQVVEEAL---SRLLGHPVRVTAAGRTDAGVHARAQV 142
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
H+ T + E + AL GLLP D+ A FHAR++A+ K Y Y ++ V
Sbjct: 143 IHWQTARPFPA-ERLVPALRGLLPLDVAAVAAGEAPAGFHARYAARRKTYVYHLWRAPVA 201
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
DP R + +H L+ M +AA G+HDF+AF + N ++++R + E
Sbjct: 202 DPLHRRWQWHLPLALDVAAMAEAARRLEGRHDFAAFKAA--GSPVRNTRRTLYRCRLEEH 259
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G LL++ +E GFL R +V L++IG+ P V +LAT R++LA +AP H
Sbjct: 260 GPLLRIVLEADGFLMHMARGIVGTLVEIGRGRWPAGHVDMLLAT-GRRQLA--GPTAPAH 316
Query: 292 GLCLVEVKYNE 302
GL L V+Y++
Sbjct: 317 GLVLWRVEYDD 327
>gi|15901439|ref|NP_346043.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae TIGR4]
gi|111656856|ref|ZP_01407696.1| hypothetical protein SpneT_02001886 [Streptococcus pneumoniae
TIGR4]
gi|149013277|ref|ZP_01834035.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP19-BS75]
gi|168486863|ref|ZP_02711371.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC1087-00]
gi|225859353|ref|YP_002740863.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 70585]
gi|303253960|ref|ZP_07340080.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS455]
gi|303258528|ref|ZP_07344508.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP-BS293]
gi|303262617|ref|ZP_07348557.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP14-BS292]
gi|303263556|ref|ZP_07349478.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS397]
gi|303267576|ref|ZP_07353421.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS457]
gi|303269928|ref|ZP_07355667.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS458]
gi|387626815|ref|YP_006062991.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae INV104]
gi|387759720|ref|YP_006066698.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae INV200]
gi|418112939|ref|ZP_12749939.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41538]
gi|418130756|ref|ZP_12767639.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA07643]
gi|418139930|ref|ZP_12776755.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13338]
gi|418167200|ref|ZP_12803855.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17971]
gi|418180961|ref|ZP_12817530.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41688]
gi|418185339|ref|ZP_12821880.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47283]
gi|418187590|ref|ZP_12824113.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47360]
gi|418200765|ref|ZP_12837208.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47976]
gi|418230383|ref|ZP_12856982.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae EU-NP01]
gi|419478247|ref|ZP_14018071.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA18068]
gi|419510861|ref|ZP_14050502.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae NP141]
gi|419515115|ref|ZP_14054740.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae
England14-9]
gi|419524064|ref|ZP_14063639.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13723]
gi|419530531|ref|ZP_14070058.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA40028]
gi|421213529|ref|ZP_15670484.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070108]
gi|421215705|ref|ZP_15672626.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070109]
gi|421247864|ref|ZP_15704344.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2082170]
gi|421268763|ref|ZP_15719632.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SPAR95]
gi|421271021|ref|ZP_15721875.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SPAR48]
gi|421296440|ref|ZP_15747149.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA58581]
gi|444382854|ref|ZP_21181053.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PCS8106]
gi|444385720|ref|ZP_21183791.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PCS8203]
gi|444414193|ref|ZP_21210485.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0199]
gi|25453312|sp|Q97PL0.1|TRUA_STRPN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|254764867|sp|C1C8I7.1|TRUA_STRP7 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|14973090|gb|AAK75683.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae TIGR4]
gi|147762942|gb|EDK69888.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP19-BS75]
gi|183570198|gb|EDT90726.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC1087-00]
gi|225721425|gb|ACO17279.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 70585]
gi|301794601|emb|CBW37047.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae INV104]
gi|301802309|emb|CBW35063.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae INV200]
gi|302599048|gb|EFL66074.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS455]
gi|302636173|gb|EFL66668.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP14-BS292]
gi|302640029|gb|EFL70484.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP-BS293]
gi|302640531|gb|EFL70939.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS458]
gi|302642899|gb|EFL73201.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS457]
gi|302646594|gb|EFL76819.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS397]
gi|353783301|gb|EHD63730.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41538]
gi|353802080|gb|EHD82380.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA07643]
gi|353829192|gb|EHE09326.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17971]
gi|353843033|gb|EHE23078.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41688]
gi|353848623|gb|EHE28635.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47283]
gi|353849575|gb|EHE29580.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47360]
gi|353864306|gb|EHE44224.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47976]
gi|353885264|gb|EHE65053.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae EU-NP01]
gi|353904709|gb|EHE80159.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13338]
gi|379556472|gb|EHZ21527.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13723]
gi|379565683|gb|EHZ30675.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA18068]
gi|379573439|gb|EHZ38394.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA40028]
gi|379631464|gb|EHZ96041.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae NP141]
gi|379635664|gb|EIA00223.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae
England14-9]
gi|395579283|gb|EJG39787.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070108]
gi|395579912|gb|EJG40407.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070109]
gi|395613143|gb|EJG73174.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2082170]
gi|395867235|gb|EJG78359.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SPAR48]
gi|395869017|gb|EJG80133.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SPAR95]
gi|395895313|gb|EJH06288.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA58581]
gi|444249398|gb|ELU55889.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PCS8203]
gi|444251223|gb|ELU57695.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PCS8106]
gi|444282845|gb|ELU88077.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0199]
Length = 249
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 140/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFTVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P +RHYA H Y L+ M+ A + G HDF+ F + + V+++ +I
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGF--TASGTSVEDKVRTITEASLI 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|418967721|ref|ZP_13519369.1| tRNA pseudouridine synthase A [Streptococcus mitis SK616]
gi|383342796|gb|EID21000.1| tRNA pseudouridine synthase A [Streptococcus mitis SK616]
Length = 261
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L ++ K + + + GA RTD+GVHA G
Sbjct: 15 RYKATISYDGYAFAGFQRQPHARSVQEEIEKNLTKLNK--GQAVTVHGAGRTDSGVHALG 72
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 73 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFVVDRGR 131
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M+ A + G HDF+ F D++ ++ R D
Sbjct: 132 PKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLRVD 191
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 192 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 246
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 247 AAPNGLYLKEIRYEE 261
>gi|431792517|ref|YP_007219422.1| pseudouridylate synthase I [Desulfitobacterium dichloroeliminans
LMG P-21439]
gi|430782743|gb|AGA68026.1| pseudouridylate synthase I [Desulfitobacterium dichloroeliminans
LMG P-21439]
Length = 269
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/253 (39%), Positives = 137/253 (54%), Gaps = 11/253 (4%)
Query: 53 LVIAYDGTRYAGWQFQTS--PPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
L IAYDGT Y G+Q Q PT+Q +E KL E + L A RTD GVHA GQ
Sbjct: 15 LKIAYDGTHYHGFQRQPEFHGPTVQGSLESVW---AKLVEEVVTLNTAGRTDRGVHATGQ 71
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
V +F T + I A+N LLP DIRV + FHARFSA+ K Y Y+I N +
Sbjct: 72 VVNFRTAARIPAAK-IPKAMNSLLPRDIRVVDAQEVADSFHARFSARWKRYDYEIDNHTI 130
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
D F+R Y+ H L+ M+QAA+ VG+H+F AF +V N + ++++ V E
Sbjct: 131 ADVFKRLYSVHVPVPLDWQRMQQAAQLMVGRHNFKAFSSVGGNSKTFE--RTLYVCQVTE 188
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+++ G GFLY VR + L+ +G++ IPP+ +P IL +R E + +A P
Sbjct: 189 HQGQIRITCIGDGFLYNMVRIIAGTLIYVGRKRIPPEAIPGIL---ERGERKRGGPTAAP 245
Query: 291 HGLCLVEVKYNEE 303
GL L V Y EE
Sbjct: 246 RGLTLSYVHYGEE 258
>gi|405756718|ref|YP_006680182.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC2540]
gi|404225918|emb|CBY77280.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC2540]
Length = 248
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 143/253 (56%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG+ + G+Q Q + T+Q +EKAL ++ K + +R+ + RTDTGVHA G
Sbjct: 3 RYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHK--GKTVRITASGRTDTGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + E AL + P DI + +FHARF K Y Y +
Sbjct: 61 QVIHFDSELDITA-EKFQKALQVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRTK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ DPF R++A H Y+L+ + M+ A++ +G+HDF++F + R +R + V++++ D
Sbjct: 120 IFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSA-RTER-DSKVRTLYSIDFY 177
Query: 230 EM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E L + +G+GFLY VR + LL G++ I PD + + L +DR++L + +A
Sbjct: 178 EEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQDRISPDDISEALLARDRQKLI--SKTA 235
Query: 289 PPHGLCLVEVKYN 301
PP GL L V Y
Sbjct: 236 PPQGLYLWRVDYE 248
>gi|307709543|ref|ZP_07645997.1| tRNA pseudouridine synthase A [Streptococcus mitis SK564]
gi|307619674|gb|EFN98796.1| tRNA pseudouridine synthase A [Streptococcus mitis SK564]
Length = 249
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 138/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GQTITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLAYQMDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M+ A + G HDF+ F D++ ++ R D
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLRVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|333396575|ref|ZP_08478392.1| tRNA pseudouridine synthase A [Lactobacillus coryniformis subsp.
coryniformis KCTC 3167]
Length = 261
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/258 (37%), Positives = 142/258 (55%), Gaps = 13/258 (5%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLV--GASRTDTGVH 106
++++ IAYDGT++AG+Q Q T+Q ++EKA V + + R+V G+ RTD GVH
Sbjct: 2 LRYKVTIAYDGTQFAGFQLQVKQRTVQGVMEKA---VRTIAKSPTRIVVNGSGRTDAGVH 58
Query: 107 AWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIY 166
A GQV HF PF ++ ALN LLP D+ V++ A P FHAR+ K Y Y++
Sbjct: 59 ALGQVVHFDFPFVLPA-AAMLKALNSLLPLDVVVKDCQVADPGFHARYDTTGKRYVYRVS 117
Query: 167 NDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRF 226
DPF+R Y H Y L+ + A F+G HDFS+F + N V+++F
Sbjct: 118 RGYYTDPFRRFYTGHWKYALDVDKIELALTDFIGTHDFSSF--AASGGSIKNKVRTIFAA 175
Query: 227 DVIEMGALLQL--EVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
V E A +L E G+GFLY VR MV + L+IG P + ++ +DR + A+Y
Sbjct: 176 TVTEDPASDELIFEFYGNGFLYNMVRIMVGVALEIGNGRRPVHDILRLYEVKDRTQ-ARY 234
Query: 285 ALSAPPHGLCLVEVKYNE 302
+AP GL L +V Y +
Sbjct: 235 --TAPASGLYLKKVYYGD 250
>gi|167767771|ref|ZP_02439824.1| hypothetical protein CLOSS21_02306 [Clostridium sp. SS2/1]
gi|167710510|gb|EDS21089.1| tRNA pseudouridine synthase A [Clostridium sp. SS2/1]
gi|291558888|emb|CBL37688.1| pseudouridylate synthase I [butyrate-producing bacterium SSC/2]
Length = 252
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 146/254 (57%), Gaps = 13/254 (5%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L++AYDGT Y GWQ Q + T++ ++ K +++L ED++++GASRTD+GVHA G V
Sbjct: 5 KLIVAYDGTGYCGWQVQPNEITVEGVLNK---HISELTGEDIKVIGASRTDSGVHALGNV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T G E + ALN LP DI +++ ++H RF K Y Y YN
Sbjct: 62 AVFDTESRIPG-EKMAKALNARLPEDIIIQDSKEVPLDYHPRFQDTRKTYEYTFYNARYD 120
Query: 172 DPF-QRHYAYHSVY-KLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P RH+ H VY L+ M++AA YF+G+H F + + + ++ + V+ ++ DV
Sbjct: 121 NPVTSRHH--HFVYVPLDVEKMKEAASYFLGEHCFISMCSSKA--QVTSYVREIYECDVT 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G +++ V GSGFLY VR M LL++G+ P V +ILA+++R P
Sbjct: 177 QNGRYIKMRVTGSGFLYNMVRLMAGTLLEVGRGKQEPQWVKEILASKER---VTPGPKLP 233
Query: 290 PHGLCLVEVKYNEE 303
GL L++++Y E+
Sbjct: 234 AKGLTLIQIEYPED 247
>gi|306820983|ref|ZP_07454602.1| tRNA pseudouridine synthase A [Eubacterium yurii subsp. margaretiae
ATCC 43715]
gi|304550924|gb|EFM38896.1| tRNA pseudouridine synthase A [Eubacterium yurii subsp. margaretiae
ATCC 43715]
Length = 245
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 138/249 (55%), Gaps = 10/249 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I+YDGT Y+GWQ Q + +IQ +E A ++ + E++ ++ + RTD GVHA Q+A
Sbjct: 6 LEISYDGTNYSGWQRQKNAISIQEKIEDA---ISLICNEEINVIASGRTDAGVHALSQIA 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T S D + A+N LP DIR+ +F+ARFSAK K Y Y I N + +
Sbjct: 63 NFSTSSSIDA-KKFAKAINTKLPDDIRILSSKEVDEDFNARFSAKKKTYIYHILNREIKN 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM- 231
PF Y+ H KL+ LM+ + +G HDF++F + N+ N +K+++ D++++
Sbjct: 122 PFWDKYSMHINRKLDLELMKSNSNMLIGTHDFTSFYTYEENNP-KNTIKTIYSSDIVKIY 180
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
+L + G GFLY VR +V L++IG DI +IL +DR K +A
Sbjct: 181 EDILTFSITGDGFLYNMVRIIVGTLIEIGLHQKNDDI-SQILMYKDR---IKAGATAKAK 236
Query: 292 GLCLVEVKY 300
GL L V+Y
Sbjct: 237 GLFLKNVEY 245
>gi|256618219|ref|ZP_05475065.1| tRNA pseudouridine synthase [Enterococcus faecalis ATCC 4200]
gi|422719066|ref|ZP_16775716.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0017]
gi|256597746|gb|EEU16922.1| tRNA pseudouridine synthase [Enterococcus faecalis ATCC 4200]
gi|315033638|gb|EFT45570.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0017]
Length = 246
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 141/250 (56%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDG RY+GWQ S TIQ +E L ++T E + ++G+ RTD G HA GQ
Sbjct: 5 KLTIEYDGKRYSGWQRLGNSEKTIQGKIESILKQMTG---EPIEIIGSGRTDAGTHARGQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T S E + + LN LP DI V+E++ FHAR++A K Y Y ++N +
Sbjct: 62 VANFKTTSSLTTTEML-SFLNRYLPGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSPI 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
+ F+R++++H L+ M QA + +G HDF F +++N + + +++ + +
Sbjct: 121 PNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKNKK--STTRTIEKITIER 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G +LQ G+GFL++ VR +V LL+IG I+ ++ AT+ R+ + +AP
Sbjct: 179 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGE---TAPA 235
Query: 291 HGLCLVEVKY 300
GL L EV Y
Sbjct: 236 QGLFLDEVYY 245
>gi|440785495|ref|ZP_20962252.1| tRNA pseudouridine synthase A [Clostridium pasteurianum DSM 525]
gi|440218391|gb|ELP57613.1| tRNA pseudouridine synthase A [Clostridium pasteurianum DSM 525]
Length = 244
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 137/249 (55%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+I YDGT Y+GWQ Q + T++ ++EK+L +T E+++++G+SRTD GVHA G V
Sbjct: 5 KLIIEYDGTNYSGWQIQKNVITVEQVIEKSLNDITG---ENIKIIGSSRTDAGVHAKGFV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
+F T S + LNG LP DI + F++RF ++ K Y Y I +
Sbjct: 62 GNFFTE-SKIPCDRFRNILNGKLPKDIVILNSEEVQLSFNSRFDSRGKTYSYTILSTPQR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
R+Y YH L+ L+ +A++ F+G HDF+AF + N + V+++ ++I+
Sbjct: 121 PAIGRNYVYHFRKNLDLGLILEASKEFIGTHDFAAFKSSGGNTK--TTVRTISNLEIIKR 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
+ + G GFLY VR ++ L+++G E I P + IL +++R PP
Sbjct: 179 DDYIIFTITGDGFLYNMVRIIIGTLIEVGLEKISPKNIKTILLSRNRNMAGP---CVPPG 235
Query: 292 GLCLVEVKY 300
GLCL +V Y
Sbjct: 236 GLCLEKVYY 244
>gi|389576424|ref|ZP_10166452.1| pseudouridylate synthase I [Eubacterium cellulosolvens 6]
gi|389311909|gb|EIM56842.1| pseudouridylate synthase I [Eubacterium cellulosolvens 6]
Length = 271
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/277 (34%), Positives = 142/277 (51%), Gaps = 20/277 (7%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L+IAYDGT Y G+Q Q + T+Q +V +A V++L E++R +GASRTD GVHA G V
Sbjct: 9 LIIAYDGTNYCGFQVQPNGVTVQELVNRA---VSELTGEEIRTIGASRTDAGVHARGNVV 65
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
F T G + ALN LP DI+V+ P+FH R++ K Y Y+I N + D
Sbjct: 66 VFDTKARMPG-DKYSYALNPRLPDDIKVQLSREVSPDFHPRYTDTVKTYEYRILNRRMPD 124
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P +R + + L+ M+ AA Y G HDF +F + V++++ V
Sbjct: 125 PTRRLNTLFNYFSLDADRMQAAARYLEGTHDFRSFQASGETNPDKETVRTIYSASVTRGN 184
Query: 233 A------LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
A L+ + G+GFLY VR + L++IG+ + P+ + KI+ + R
Sbjct: 185 AADGNEDLITFRITGNGFLYNMVRILAGTLIEIGRGKLEPEDMKKIMDARSRDAAGP--- 241
Query: 287 SAPPHGLCLVEVKYNEEHLRLPAACPLSSFGRHHSVR 323
+APP GL LVE++Y P P + H S R
Sbjct: 242 TAPPQGLTLVEIRY-------PEWEPWEVYENHESNR 271
>gi|255025629|ref|ZP_05297615.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J2-003]
Length = 248
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 142/253 (56%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG+ + G+Q Q + T+Q +EKAL ++ K + +R+ + RTDTGVHA G
Sbjct: 3 RYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHK--GKTVRITASGRTDTGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + E AL + P DI + +FHARF K Y Y +
Sbjct: 61 QVIHFDSELDITA-EKFQKALQVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRTK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ DPF R++A H Y+L+ + M+ A++ +G+HDF++F + R +R + V++++ D
Sbjct: 120 IFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSA-RTER-DSKVRTLYSIDFY 177
Query: 230 EM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E L + +G+GFLY VR + LL G+ I PD + K L +DR++L + +A
Sbjct: 178 EEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISKALLARDRQKLI--SKTA 235
Query: 289 PPHGLCLVEVKYN 301
PP GL L V Y
Sbjct: 236 PPQGLYLWRVDYE 248
>gi|290579596|ref|YP_003483988.1| tRNA pseudouridine synthase A [Streptococcus mutans NN2025]
gi|254996495|dbj|BAH87096.1| putative tRNA pseudouridine synthase A [Streptococcus mutans
NN2025]
Length = 249
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 142/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDGT ++G+Q Q T+Q +EK L+R+ + +++ GA RTD GVHA+G
Sbjct: 3 RYKAIISYDGTNFSGFQRQPQMRTVQEEIEKTLLRLN--SGQAVKVHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + L+ P DI V ++ +FHAR+ K Y + +
Sbjct: 61 QVIHFDLPQQRD-LEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHRKTYEFLVDLGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV- 228
+P RHYA H YK++ ++++ A + G HDF+ F + N V+++ R V
Sbjct: 120 PKNPLMRHYATHFPYKVDFSVVKAAIKKLRGTHDFTGF--TASGTSVENKVRTISRATVE 177
Query: 229 -IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E L GSGFLY+QVRNMV LL+IG +P D + +IL + DR LA +
Sbjct: 178 KDEKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDR-SLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E+ Y++
Sbjct: 235 AASNGLYLKEIIYDD 249
>gi|345304322|ref|YP_004826224.1| tRNA pseudouridine synthase A [Rhodothermus marinus SG0.5JP17-172]
gi|345113555|gb|AEN74387.1| tRNA pseudouridine synthase A [Rhodothermus marinus SG0.5JP17-172]
Length = 252
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/255 (39%), Positives = 140/255 (54%), Gaps = 9/255 (3%)
Query: 51 WRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+RL+I YDGT ++GWQ Q + P+IQ +E+AL V RE +R+VG+ RTD GVHA GQ
Sbjct: 4 YRLLIEYDGTDFSGWQIQRNGPSIQAALEEALAVVL---RERVRIVGSGRTDAGVHARGQ 60
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VAHF T D E + +LNGLLPP I +RE++ A FHAR+ A+ + YHY Y V
Sbjct: 61 VAHFCTNRPVDP-ERLQGSLNGLLPPSIAIREVAPAPDNFHARYDARWRRYHY--YVATV 117
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
+RH ++ + M +AA +G HDF+ F Q R + R+
Sbjct: 118 PCALERHLRWYLRPAPDFARMNRAACDLLGTHDFTTFCRTQAATRNRTCTVYLARWVPDP 177
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
E+ FL+ VR +V L++IG+ +P++LA +DR+ LA A AP
Sbjct: 178 RPGDWHFEIVADRFLHGMVRAIVGTLIEIGRGQRDIAAIPELLAARDRR-LAGPA--APA 234
Query: 291 HGLCLVEVKYNEEHL 305
HGL L V Y E+ L
Sbjct: 235 HGLVLEAVGYAEDPL 249
>gi|333373218|ref|ZP_08465134.1| tRNA pseudouridine synthase A [Desmospora sp. 8437]
gi|332970797|gb|EGK09777.1| tRNA pseudouridine synthase A [Desmospora sp. 8437]
Length = 258
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 136/255 (53%), Gaps = 14/255 (5%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
K +L +AYDGT ++G+Q Q T+Q +E+ L RVT E + + GA RTD GVHA G
Sbjct: 3 KIKLTVAYDGTDFSGFQRQPGKRTVQGTLEETLTRVTG---ETISVTGAGRTDAGVHALG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF T E LN LP D+ V + EFHAR+ A K Y Y +
Sbjct: 60 QVIHFETSVPIP-TERWVRLLNASLPRDLLVTQAKEVPREFHARYDACWKHYRYTLDTCP 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAF--VNVQRNDRLLNPVKSVFRFD 227
+ D F+R Y H + L+ M++AA + G HDF++F Q DR +S++ +
Sbjct: 119 IPDLFRRRYQTHYPHPLSRDRMQRAARHLTGTHDFTSFSAARAQVKDRR----RSLYHCE 174
Query: 228 VIEMG-ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
V E+ +L +EV G GFLY VR + L++IG IPPD + IL +DR K
Sbjct: 175 VKEVNPGVLSIEVVGDGFLYHMVRILTGTLVEIGAGKIPPDEIRGILKAKDRSAAGK--- 231
Query: 287 SAPPHGLCLVEVKYN 301
+ PP GL +VEV Y
Sbjct: 232 TFPPEGLVMVEVGYT 246
>gi|149021302|ref|ZP_01835548.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP23-BS72]
gi|168491513|ref|ZP_02715656.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC0288-04]
gi|225861429|ref|YP_002742938.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae
Taiwan19F-14]
gi|298229625|ref|ZP_06963306.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298254115|ref|ZP_06977701.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298503335|ref|YP_003725275.1| tRNA-pseudouridine synthase I [Streptococcus pneumoniae
TCH8431/19A]
gi|387788652|ref|YP_006253720.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae ST556]
gi|417313075|ref|ZP_12099787.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA04375]
gi|417687042|ref|ZP_12336316.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41301]
gi|418083400|ref|ZP_12720597.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44288]
gi|418085589|ref|ZP_12722768.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47281]
gi|418094386|ref|ZP_12731513.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA49138]
gi|418101056|ref|ZP_12738139.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 7286-06]
gi|418103298|ref|ZP_12740370.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae NP070]
gi|418119039|ref|ZP_12755996.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA18523]
gi|418142110|ref|ZP_12778923.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13455]
gi|418146852|ref|ZP_12783630.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13637]
gi|418151101|ref|ZP_12787847.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA14798]
gi|418153332|ref|ZP_12790070.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA16121]
gi|418160299|ref|ZP_12796998.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17227]
gi|418164893|ref|ZP_12801561.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17371]
gi|418171732|ref|ZP_12808356.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA19451]
gi|418194177|ref|ZP_12830666.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47439]
gi|418196261|ref|ZP_12832737.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47688]
gi|418198424|ref|ZP_12834882.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47778]
gi|418223797|ref|ZP_12850437.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 5185-06]
gi|418228103|ref|ZP_12854720.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 3063-00]
gi|419425543|ref|ZP_13965739.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 7533-05]
gi|419427656|ref|ZP_13967837.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 5652-06]
gi|419429796|ref|ZP_13969960.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA11856]
gi|419436389|ref|ZP_13976477.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 8190-05]
gi|419438635|ref|ZP_13978703.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13499]
gi|419445108|ref|ZP_13985123.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA19923]
gi|419447254|ref|ZP_13987259.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 7879-04]
gi|419449385|ref|ZP_13989381.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 4075-00]
gi|419451016|ref|ZP_13991002.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae EU-NP02]
gi|419475940|ref|ZP_14015776.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA14688]
gi|419487083|ref|ZP_14026845.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44128]
gi|419502249|ref|ZP_14041933.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47628]
gi|419519311|ref|ZP_14058917.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA08825]
gi|419521526|ref|ZP_14061121.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA05245]
gi|419527934|ref|ZP_14067477.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17719]
gi|421209377|ref|ZP_15666390.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070005]
gi|421218232|ref|ZP_15675126.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070335]
gi|421225439|ref|ZP_15682177.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070768]
gi|421241073|ref|ZP_15697618.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2080913]
gi|421287869|ref|ZP_15738632.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA58771]
gi|421290164|ref|ZP_15740914.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA54354]
gi|421305556|ref|ZP_15756210.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA62331]
gi|254764872|sp|C1CSL6.1|TRUA_STRZT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|147930403|gb|EDK81387.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP23-BS72]
gi|183574268|gb|EDT94796.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC0288-04]
gi|225728219|gb|ACO24070.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae
Taiwan19F-14]
gi|298238930|gb|ADI70061.1| tRNA-pseudouridine synthase I [Streptococcus pneumoniae
TCH8431/19A]
gi|327389783|gb|EGE88128.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA04375]
gi|332073932|gb|EGI84410.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41301]
gi|353754620|gb|EHD35232.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44288]
gi|353756298|gb|EHD36899.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47281]
gi|353764882|gb|EHD45430.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA49138]
gi|353770556|gb|EHD51068.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 7286-06]
gi|353774599|gb|EHD55086.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae NP070]
gi|353790991|gb|EHD71372.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA18523]
gi|353806361|gb|EHD86635.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13455]
gi|353812427|gb|EHD92662.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13637]
gi|353814311|gb|EHD94537.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA14798]
gi|353816883|gb|EHD97091.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA16121]
gi|353822032|gb|EHE02208.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17227]
gi|353828725|gb|EHE08861.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17371]
gi|353835469|gb|EHE15563.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA19451]
gi|353857755|gb|EHE37717.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47439]
gi|353860272|gb|EHE40217.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47688]
gi|353861534|gb|EHE41469.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47778]
gi|353878595|gb|EHE58425.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 5185-06]
gi|353880498|gb|EHE60313.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 3063-00]
gi|379138394|gb|AFC95185.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae ST556]
gi|379537042|gb|EHZ02227.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA13499]
gi|379538826|gb|EHZ04006.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA05245]
gi|379549974|gb|EHZ15076.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA11856]
gi|379558722|gb|EHZ23754.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA14688]
gi|379566087|gb|EHZ31078.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17719]
gi|379572801|gb|EHZ37758.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA19923]
gi|379585452|gb|EHZ50308.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44128]
gi|379600462|gb|EHZ65243.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47628]
gi|379613210|gb|EHZ77923.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 8190-05]
gi|379614794|gb|EHZ79504.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 7879-04]
gi|379617849|gb|EHZ82529.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 5652-06]
gi|379619004|gb|EHZ83678.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 7533-05]
gi|379622003|gb|EHZ86639.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 4075-00]
gi|379622721|gb|EHZ87355.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae EU-NP02]
gi|379641148|gb|EIA05686.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA08825]
gi|395573473|gb|EJG34063.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070005]
gi|395583001|gb|EJG43450.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070335]
gi|395588926|gb|EJG49248.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070768]
gi|395607451|gb|EJG67548.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2080913]
gi|395886432|gb|EJG97448.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA58771]
gi|395887849|gb|EJG98863.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA54354]
gi|395904514|gb|EJH15428.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA62331]
Length = 249
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 140/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GQTITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVAADFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P +RHYA H Y L+ M+ A + G HDF+ F + + V+++ +I
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGF--TASGTSVEDKVRTITEASLI 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|148993376|ref|ZP_01822893.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP9-BS68]
gi|168488681|ref|ZP_02712880.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP195]
gi|417679576|ref|ZP_12328972.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17570]
gi|418126260|ref|ZP_12763166.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44511]
gi|418192049|ref|ZP_12828551.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47388]
gi|418214805|ref|ZP_12841539.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA54644]
gi|418234810|ref|ZP_12861386.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA08780]
gi|419484841|ref|ZP_14024616.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA43257]
gi|419508683|ref|ZP_14048335.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA49542]
gi|421220700|ref|ZP_15677539.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070425]
gi|421222952|ref|ZP_15679734.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070531]
gi|421279387|ref|ZP_15730193.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17301]
gi|421294712|ref|ZP_15745433.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA56113]
gi|421301468|ref|ZP_15752138.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA19998]
gi|147927931|gb|EDK78951.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP9-BS68]
gi|183572616|gb|EDT93144.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP195]
gi|332072441|gb|EGI82924.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17570]
gi|353796200|gb|EHD76545.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA44511]
gi|353855135|gb|EHE35105.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47388]
gi|353869535|gb|EHE49416.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA54644]
gi|353886432|gb|EHE66214.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA08780]
gi|379581594|gb|EHZ46478.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA43257]
gi|379611128|gb|EHZ75856.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA49542]
gi|395586610|gb|EJG46977.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070425]
gi|395586932|gb|EJG47294.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2070531]
gi|395878880|gb|EJG89942.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17301]
gi|395893281|gb|EJH04268.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA56113]
gi|395899028|gb|EJH09972.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA19998]
Length = 249
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 140/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GQTITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P +RHYA H Y L+ M+ A + G HDF+ F + + V+++ +I
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGF--TASGTSVEDKVRTITEASLI 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIALILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|291533595|emb|CBL06708.1| pseudouridylate synthase I [Megamonas hypermegale ART12/1]
Length = 256
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/252 (37%), Positives = 141/252 (55%), Gaps = 15/252 (5%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L ++YDGT Y G+Q QT +Q ++E AL KL + + L A RTD GVHA GQV
Sbjct: 17 KLTLSYDGTNYHGFQRQTKVVAVQNVLEGALF---KLFGDSIELAAAGRTDAGVHAIGQV 73
Query: 112 AHFITPFSYDG---LESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
+F T DG ++++ A N LLP DI + + A +F A S KSKIY YK++ +
Sbjct: 74 VNFFT----DGTIPIQNVVRAGNRLLPDDIVLLKAEEADRDFSALHSVKSKIYIYKVFEN 129
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
+ DPF + +H KLN M++A +Y G+HDFS+F + ND +P++ ++
Sbjct: 130 ELADPFMSRFYWHVNKKLNLEDMQEALKYIEGEHDFSSFRSAGGND--TSPIREIYEASC 187
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ + + GSGFLY VRN++ L++ IG + VPKI+ ++R K A
Sbjct: 188 TKENNVYTFKFWGSGFLYHMVRNIMGLMINIGLGRVDKHEVPKIIEAKNRALAGKM---A 244
Query: 289 PPHGLCLVEVKY 300
P +GL L +V Y
Sbjct: 245 PANGLYLQKVYY 256
>gi|254854197|ref|ZP_05243545.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL R2-503]
gi|300763651|ref|ZP_07073649.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL N1-017]
gi|404282163|ref|YP_006683061.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC2755]
gi|404287977|ref|YP_006694563.1| tRNA pseudouridine synthase A [Listeria monocytogenes serotype 7
str. SLCC2482]
gi|258607589|gb|EEW20197.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL R2-503]
gi|300515928|gb|EFK42977.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL N1-017]
gi|404228798|emb|CBY50203.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC2755]
gi|404246906|emb|CBY05131.1| tRNA pseudouridine synthase A [Listeria monocytogenes serotype 7
str. SLCC2482]
Length = 248
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 142/253 (56%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG+ + G+Q Q + T+Q +EKAL ++ K + +R+ + RTDTGVHA G
Sbjct: 3 RYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHK--GKTVRITASGRTDTGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + E AL + P DI + +FHARF K Y Y +
Sbjct: 61 QVIHFDSELDITA-EKFQKALQAMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRTK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ DPF R++A H Y+L+ + M+ A++ +G+HDF++F + R +R + V++++ D
Sbjct: 120 IFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSA-RTER-DSKVRTLYSIDFY 177
Query: 230 EM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E L + +G+GFLY VR + LL G+ I PD + + L +DR++L + +A
Sbjct: 178 EEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLI--SKTA 235
Query: 289 PPHGLCLVEVKYN 301
PP GL L V Y
Sbjct: 236 PPQGLYLWRVDYE 248
>gi|227871757|ref|ZP_03990163.1| tRNA-pseudouridine synthase I [Oribacterium sinus F0268]
gi|227842397|gb|EEJ52621.1| tRNA-pseudouridine synthase I [Oribacterium sinus F0268]
Length = 265
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/252 (37%), Positives = 134/252 (53%), Gaps = 8/252 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L +AY+GT Y G+Q Q TI VE+ L + + E+ +GASRTD GVHA G +
Sbjct: 14 LKLAYEGTSYHGFQKQEGLSTIAGTVEEQLRNLFPWKMENF--IGASRTDQGVHALGNLL 71
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
F T G E I ALN LP DIRV E + +FH RF+ K Y Y I V +
Sbjct: 72 SFDTEGKVSG-EQILRALNSYLPEDIRVMEAYSVQQDFHPRFTPHRKAYRYSICRSKVEN 130
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLL--NPVKSVFRFDVIE 230
P +R AYH + L+ + + E G+HDF +F N + L + V+ ++RF + E
Sbjct: 131 PLRRRTAYHYTFPLDCGKISEGMELLKGEHDFRSFANPKAQSLLQGGSSVREIYRFSMEE 190
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G L VEG+GFLY +R + LL++G+ I + +IL +DR LA +AP
Sbjct: 191 EGDYLHFSVEGNGFLYHMIRILAGTLLELGRGRISLSQLEEILEKKDRT-LA--GPTAPA 247
Query: 291 HGLCLVEVKYNE 302
GLCL+ + Y +
Sbjct: 248 KGLCLMNLDYGD 259
>gi|118444045|ref|YP_877232.1| tRNA pseudouridine synthase A [Clostridium novyi NT]
gi|118134501|gb|ABK61545.1| tRNA pseudouridine synthase A [Clostridium novyi NT]
Length = 246
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 142/250 (56%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+LVI YDG+ Y+GWQ Q TIQ +E+A+ +TK + + + G SRTD GVHA V
Sbjct: 6 KLVIEYDGSNYSGWQKQKHSMTIQQRIEEAIFDITK---QKIEVNGCSRTDAGVHARNFV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVP-EFHARFSAKSKIYHYKIYNDAV 170
A+FI S E A+N LP DI ++ S VP +FHARF +K K Y Y I N
Sbjct: 63 ANFIIDSSIPP-EKFKYAMNSKLPKDIVIKN-SCEVPMDFHARFQSKGKKYVYTILNREE 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
R YH KL+ LMR A++YF+G H+F +F + + + +++++ DV +
Sbjct: 121 PPTIDRGVVYHFNKKLDVDLMRSASKYFIGSHEFDSFYK-KAGSSVKSTLRTIYYCDVTK 179
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+ ++++ V G GFLY VR + L+++G I P+ + I+ +DR++ + S PP
Sbjct: 180 VDDIIKIIVIGEGFLYNMVRIIAGTLVEVGIARIKPEDIKNIILAKDREKAGR---SLPP 236
Query: 291 HGLCLVEVKY 300
GLCL EV Y
Sbjct: 237 QGLCLEEVLY 246
>gi|359410104|ref|ZP_09202569.1| tRNA pseudouridine synthase A [Clostridium sp. DL-VIII]
gi|357168988|gb|EHI97162.1| tRNA pseudouridine synthase A [Clostridium sp. DL-VIII]
Length = 244
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 138/249 (55%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+I +DG+ + GWQ Q T+Q ++E A+ + T E++++ G+SRTD GVHA V
Sbjct: 5 KLIIEFDGSNFCGWQRQPKGRTVQKVIETAIYKATG---EEIQINGSSRTDAGVHAREMV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F T + G + A+N LP D+ + + EFHAR+S+K K Y Y I N +
Sbjct: 62 ANFFTDSTIPG-DKFREAINTRLPEDVSIIKSEEVDQEFHARYSSKGKTYSYTIVNRSER 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
Y YH Y+L+ MR+A YF+GKHDF AF++ + ++++ + +
Sbjct: 121 LSLGHQYLYHYKYRLDVDKMRKACNYFIGKHDFKAFMSP--GSSIKTTIRTITELYIEQD 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G +++ + GFLY VR +V L+++G E + + + I+ +RK + + PP+
Sbjct: 179 GEKIKIFITADGFLYNMVRIIVGTLIKVGNEKLEVEDIEDIIIEGNRK---RAGMCVPPN 235
Query: 292 GLCLVEVKY 300
GL L +V Y
Sbjct: 236 GLILEKVFY 244
>gi|157150719|ref|YP_001449723.1| tRNA pseudouridine synthase A [Streptococcus gordonii str. Challis
substr. CH1]
gi|189030148|sp|A8AVB3.1|TRUA_STRGC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|157075513|gb|ABV10196.1| tRNA pseudouridine synthase A [Streptococcus gordonii str. Challis
substr. CH1]
Length = 249
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 140/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGHDFAGFQRQPHARSVQEEIEKTLTRINK--GQPVVIHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P DG E + AL+ P DI + +FH+R++ SK Y + +
Sbjct: 61 QVLHFDLPEERDG-EKLRFALDTQTPEDIDFISVEQVSDDFHSRYNKHSKTYEFLVDIGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P RHYA H Y L +L+ +A G HDF+ F D++ ++ R+D
Sbjct: 120 PKNPMMRHYATHYPYPLELSLLEEAITQLEGTHDFTGFTASGTSVEDKVRTITEAKVRYD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
L G+GFLY+Q+RNMV LL+IG + +P + + +ILA +DR LA +
Sbjct: 180 AER--NFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDR-HLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AGPNGLYLKEIRYEE 249
>gi|375086470|ref|ZP_09732877.1| tRNA pseudouridine synthase A [Megamonas funiformis YIT 11815]
gi|374564815|gb|EHR36095.1| tRNA pseudouridine synthase A [Megamonas funiformis YIT 11815]
Length = 256
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/252 (37%), Positives = 141/252 (55%), Gaps = 15/252 (5%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L ++YDGT Y G+Q QT +Q ++E AL KL + + L A RTD GVHA GQV
Sbjct: 17 KLTLSYDGTNYHGFQRQTKVVAVQNVLEGALF---KLFGDSIELAAAGRTDAGVHAIGQV 73
Query: 112 AHFITPFSYDG---LESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
+F T DG ++++ A N LLP DI + + A +F A S KSKIY YK++ +
Sbjct: 74 VNFFT----DGTIPIQNVVRAGNRLLPDDIVLLKAEEADRDFSALHSVKSKIYIYKVFEN 129
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
+ DPF + +H KLN M++A +Y G+HDFS+F + ND +P++ ++
Sbjct: 130 ELADPFMSRFYWHVNKKLNLEDMQEALKYIEGEHDFSSFRSAGGND--TSPIREIYEASC 187
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ + + GSGFLY VRN++ L++ IG + VPKI+ ++R K A
Sbjct: 188 TKENNVYTFKFWGSGFLYHMVRNIMGLMINIGLGRVDKHEVPKIIEARNRALAGKM---A 244
Query: 289 PPHGLCLVEVKY 300
P +GL L +V Y
Sbjct: 245 PANGLYLQKVYY 256
>gi|312793879|ref|YP_004026802.1| tRNA pseudouridine synthase a [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312181019|gb|ADQ41189.1| tRNA pseudouridine synthase A [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 244
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 136/248 (54%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I YDGT Y GWQ Q + TIQ +E+A + KL E++ L+G+ RTD GVHA Q A
Sbjct: 6 LTIEYDGTGYFGWQKQPNKKTIQGTIEEA---IKKLTGEEVNLIGSGRTDRGVHALNQKA 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T S + ALN +LP DI +++ +F AR+SAK K Y Y IYN
Sbjct: 63 NFKTN-SKIPTDKFPLALNSVLPGDISIKDAVEVPLDFSARYSAKQKTYKYLIYNKKSRP 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
R+YAYH Y+L+ M++A EYF+G++DF +F + + ++ V+ +
Sbjct: 122 ALLRNYAYHYPYELDVDAMQRACEYFIGEYDFKSFCSADSEAK--TTIRRVYNAYLTFEN 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ + + +GFLY R + +L +G + P +P ++ ++DR + K + PP G
Sbjct: 180 ECIAIYITANGFLYNMARIIAGTILDVGAGKLKPMDIPLVIESKDRTKAGK---TLPPWG 236
Query: 293 LCLVEVKY 300
L LV+V Y
Sbjct: 237 LYLVDVVY 244
>gi|409386794|ref|ZP_11239147.1| tRNA pseudouridine synthase A [Lactococcus raffinolactis 4877]
gi|399206007|emb|CCK20062.1| tRNA pseudouridine synthase A [Lactococcus raffinolactis 4877]
Length = 253
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 145/257 (56%), Gaps = 9/257 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ IAYDGT +AG+Q Q + T+Q +E+ L ++ ++L G+ RTD+GVHA
Sbjct: 3 RYKARIAYDGTDFAGFQIQNNGRTVQEELERVLAKLN--SGHPVKLHGSGRTDSGVHALA 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
Q+ HF P + D E + AL+ P DI V + +FH+RF SK Y Y++
Sbjct: 61 QIIHFDLPQARD-TEKLRFALDTQTPDDIDVVALELVADDFHSRFKPHSKTYQYRLTTSR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P R ++YH + M AA+ VG HDF+ F + + V+++ + +V+
Sbjct: 120 ANNPLTRRFSYHFPKIVAFDDMVAAAQLLVGTHDFTGF--TASGATVEDKVRTITQANVV 177
Query: 230 EMGALLQLEV-EGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
G L + G+GFLY+QVRNMV L++IG P V +IL Q+R +LA +A
Sbjct: 178 RSGTDEILFIFSGNGFLYKQVRNMVGTLVKIGAGKWPVSRVSEILVAQNR-DLA--GPTA 234
Query: 289 PPHGLCLVEVKYNEEHL 305
P HGLCL+EV+Y+++ +
Sbjct: 235 PAHGLCLMEVRYDDDEI 251
>gi|148986314|ref|ZP_01819186.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP3-BS71]
gi|387757834|ref|YP_006064813.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae OXC141]
gi|418232599|ref|ZP_12859185.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA07228]
gi|418237055|ref|ZP_12863621.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA19690]
gi|419480445|ref|ZP_14020250.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA19101]
gi|419500146|ref|ZP_14039840.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47597]
gi|147921782|gb|EDK72913.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP3-BS71]
gi|301800423|emb|CBW33056.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae OXC141]
gi|353885912|gb|EHE65696.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA07228]
gi|353891493|gb|EHE71247.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA19690]
gi|379570399|gb|EHZ35363.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA19101]
gi|379599454|gb|EHZ64237.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47597]
gi|429316458|emb|CCP36159.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SPN034156]
gi|429319801|emb|CCP33111.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SPN034183]
gi|429321617|emb|CCP35085.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SPN994039]
gi|429323438|emb|CCP31126.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SPN994038]
Length = 249
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 140/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQV--ITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFTVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P +RHYA H Y L+ M+ A + G HDF+ F + + V+++ +I
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGF--TASGTSVEDKVRTITEASLI 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|418977407|ref|ZP_13525226.1| tRNA pseudouridine synthase A [Streptococcus mitis SK575]
gi|383349924|gb|EID27838.1| tRNA pseudouridine synthase A [Streptococcus mitis SK575]
Length = 249
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 138/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GQGITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ + E + AL+ DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMNE-EKLRFALDTQSSEDIDVISIELVSDDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
DP +RHYA H Y L+ M+ A + G HDF+ F D++ ++ R D
Sbjct: 120 PKDPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLRVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|257083304|ref|ZP_05577665.1| tRNA pseudouridine synthase [Enterococcus faecalis Fly1]
gi|256991334|gb|EEU78636.1| tRNA pseudouridine synthase [Enterococcus faecalis Fly1]
Length = 246
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 141/250 (56%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDG RY+GWQ S TIQ +E L T++ E + ++G+ RTD G HA GQ
Sbjct: 5 KLTIEYDGKRYSGWQRLGNSEKTIQGKIESIL---TQMTGEPIEIIGSGRTDAGTHARGQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T S E + + LN LP DI V+E++ FHAR++A K Y Y ++N +
Sbjct: 62 VANFKTTSSLTTTEML-SFLNRYLPGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSPI 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
+ F+R++++H L+ M QA + +G HDF F +++ ++ + +++ + +
Sbjct: 121 PNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTNK--STTRTIEKITIER 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G +LQ G+GFL++ VR +V LL+IG I+ ++ AT+ R+ + +AP
Sbjct: 179 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGE---TAPA 235
Query: 291 HGLCLVEVKY 300
GL L EV Y
Sbjct: 236 QGLFLDEVYY 245
>gi|302873576|ref|YP_003842209.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B]
gi|307688243|ref|ZP_07630689.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B]
gi|302576433|gb|ADL50445.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B]
Length = 245
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 138/251 (54%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG Y GWQ S TIQ +EK L + L E++ ++G+ RTD GVHA
Sbjct: 4 YKLTIQYDGKNYRGWQKLSDSDKTIQSKLEKVL---STLVDEEVNVIGSGRTDAGVHARK 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
Q+A+F T + + LP DI V+ +FHAR++AK KIY Y+I N A
Sbjct: 61 QIANFHTEKDLKWKDVLKHCYT-YLPEDIVVKSCDKVDEKFHARYNAKKKIYTYRICNSA 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
D F+R Y+Y KLN M A++YF+G HDF +F +++ + + V+ ++ +
Sbjct: 120 FGDAFERKYSYLVDKKLNIDKMLAASKYFIGIHDFKSFTSMKSKKK--STVREIYDISIN 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+G ++++ G GFL+ +R + L+++G + D +P I+ D E + +AP
Sbjct: 178 CIGDMVEITYIGEGFLHNMIRILTGTLIEVGLGKMKIDEIPTIM---DGLERSDAGFTAP 234
Query: 290 PHGLCLVEVKY 300
HGL LV+V Y
Sbjct: 235 AHGLFLVDVIY 245
>gi|291522074|emb|CBK80367.1| pseudouridylate synthase I [Coprococcus catus GD/7]
Length = 247
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 142/251 (56%), Gaps = 11/251 (4%)
Query: 52 RLVIAYDGTRYAGWQF--QTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
RL+I YDG+RY GWQ + TIQ +E L +K+ E + L+GA RTD GVHA+
Sbjct: 6 RLLIEYDGSRYDGWQRLGKGHGVTIQGKLEDVL---SKMTGEQVELIGAGRTDAGVHAYE 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F T + E + LN LP DI V + FH+R++AK+K Y Y+I
Sbjct: 63 QVANFHTNSNMKCWE-MKYYLNRYLPGDIAVNRVDDVPERFHSRYNAKAKKYLYRIAIGD 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
V F R Y ++ KL+ T M++AA VG+HDF AF + +R ++ + V+ ++ D+
Sbjct: 122 VPCVFDRKYTWYCFDKLDVTAMKKAAALLVGEHDFKAFCSNKRTNK--STVREIYDIDIY 179
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
LQ+ V G+GFLY VR +V L+++GK P+ + IL +++R K +A
Sbjct: 180 ADTRELQITVYGNGFLYNMVRIIVGTLIEVGKGERRPEEMTAILESRER---TKAGATAA 236
Query: 290 PHGLCLVEVKY 300
GL L EV+Y
Sbjct: 237 AQGLFLQEVEY 247
>gi|217966203|ref|YP_002351881.1| tRNA pseudouridine synthase A [Listeria monocytogenes HCC23]
gi|386009377|ref|YP_005927655.1| tRNA pseudouridine synthase A [Listeria monocytogenes L99]
gi|386027997|ref|YP_005948773.1| tRNA pseudouridylate synthase A [Listeria monocytogenes M7]
gi|254789639|sp|B8DB42.1|TRUA_LISMH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|217335473|gb|ACK41267.1| tRNA pseudouridine synthase A [Listeria monocytogenes HCC23]
gi|307572187|emb|CAR85366.1| tRNA pseudouridine synthase A [Listeria monocytogenes L99]
gi|336024578|gb|AEH93715.1| tRNA pseudouridylate synthase A [Listeria monocytogenes M7]
Length = 248
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 141/253 (55%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG+ + G+Q Q + T+Q +EKAL ++ K + +R+ + RTDTGVHA G
Sbjct: 3 RYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHK--GKTVRITASGRTDTGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + E AL + P DI + +FHARF K Y Y +
Sbjct: 61 QVIHFDSELDITA-EKFQKALQVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRTK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ DPF R +A H Y+L+ + M+ A++ +G+HDF++F + R +R + V++++ D
Sbjct: 120 IFDPFSRDFALHYPYELDISKMKLASKRLIGEHDFTSFCSA-RTER-DSKVRTLYSIDFY 177
Query: 230 EM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E L + +G+GFLY VR + LL G+ I PD + K L +DR++L + +A
Sbjct: 178 EEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISKALLARDRQKLI--SKTA 235
Query: 289 PPHGLCLVEVKYN 301
PP GL L V Y
Sbjct: 236 PPQGLYLWRVDYE 248
>gi|335049646|ref|ZP_08542633.1| tRNA pseudouridine synthase A [Megasphaera sp. UPII 199-6]
gi|333762381|gb|EGL39879.1| tRNA pseudouridine synthase A [Megasphaera sp. UPII 199-6]
Length = 265
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 135/254 (53%), Gaps = 9/254 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L++AYDGT + G+Q QT+ +IQ +E+AL R+ + E + + GA+RTD GVHA GQV
Sbjct: 10 LIVAYDGTDFHGFQRQTNASSIQQYIEEALTRIFQ---EPITVYGAARTDAGVHARGQVV 66
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F S ++ I A+ LPP I V + F R K Y Y+I N AV D
Sbjct: 67 NFYASGSIP-VDKIPYAMKAYLPPTIAVLQAREMASHFSVRHDNCGKHYCYRIVNRAVPD 125
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
PFQ Y++ L+ MRQ A +G HDFSAF +N +NP+K+++ + +
Sbjct: 126 PFQLRYSWFIRKPLDVEAMRQGANILLGTHDFSAFEG--KNTTPMNPIKTMYAVQIQKNR 183
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+++ V G GFLY VRNM L IG +IL DRK+L +AP G
Sbjct: 184 DNVEIHVIGDGFLYHMVRNMAGGLADIGLHRFTTIHFRRILKGLDRKKLGA---TAPAGG 240
Query: 293 LCLVEVKYNEEHLR 306
LCL EV Y E R
Sbjct: 241 LCLEEVFYTEARRR 254
>gi|239825725|ref|YP_002948349.1| tRNA pseudouridine synthase A [Geobacillus sp. WCH70]
gi|259550397|sp|C5D3U9.1|TRUA_GEOSW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|239806018|gb|ACS23083.1| tRNA pseudouridine synthase A [Geobacillus sp. WCH70]
Length = 248
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/250 (36%), Positives = 140/250 (56%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ ++YDGT + G+Q Q T+Q +E+ L ++ K + +R+ + RTD GVHA+GQV
Sbjct: 6 KCTLSYDGTHFFGYQIQPGKRTVQGELERVLEQMHK--GKAIRVTASGRTDAGVHAYGQV 63
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF T S + ALN LP DI ++++ A P FHARFSAK+K Y YK+
Sbjct: 64 IHFDTFLSL-SPDQWKKALNAQLPDDIVIKDVQEADPSFHARFSAKAKEYRYKVRIAQER 122
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F R+Y YH Y L+ MR A G HDF++F + + + + + V+++++ D+
Sbjct: 123 DVFLRNYCYHYPYPLDMEAMRHALRLIEGTHDFTSFCSAKTD--VDDRVRTIYKADMAMH 180
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
LL+ G+GFLY VR +V +L++G+ D + +DR+ K +APP
Sbjct: 181 DDLLEFCFIGNGFLYNMVRIIVGTILEVGQGKRSIDSISHAFEAKDRQFAGK---TAPPQ 237
Query: 292 GLCLVEVKYN 301
GL L +V Y+
Sbjct: 238 GLYLWKVYYD 247
>gi|317497062|ref|ZP_07955389.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 5_1_63FAA]
gi|429762537|ref|ZP_19294926.1| tRNA pseudouridine synthase A [Anaerostipes hadrus DSM 3319]
gi|316895607|gb|EFV17762.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 5_1_63FAA]
gi|429181527|gb|EKY22686.1| tRNA pseudouridine synthase A [Anaerostipes hadrus DSM 3319]
Length = 252
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 145/254 (57%), Gaps = 13/254 (5%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L++AYDGT Y GWQ Q + T++ ++ K +++L ED++++GASRTD+GVHA G V
Sbjct: 5 KLIVAYDGTGYCGWQVQPNEITVEGVLNK---HISELTGEDIKVIGASRTDSGVHALGNV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T G E + ALN LP DI +++ ++H RF K Y Y YN
Sbjct: 62 AVFDTESRIPG-EKMAKALNARLPEDIIIQDSKEVPLDYHPRFQDTRKTYEYTFYNARYD 120
Query: 172 DPF-QRHYAYHSVY-KLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P RH+ H VY L+ M++AA YF+G+H F + + + ++ + V+ ++ DV
Sbjct: 121 NPVTSRHH--HFVYVPLDVEKMKEAASYFLGEHCFISMCSSKA--QVTSYVREIYECDVT 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G + + V GSGFLY VR M LL++G+ P V +ILA+++R P
Sbjct: 177 QNGRYITMRVTGSGFLYNMVRLMAGTLLEVGRGKQEPQWVKEILASKER---VTPGPKLP 233
Query: 290 PHGLCLVEVKYNEE 303
GL L++++Y E+
Sbjct: 234 AKGLTLIQIEYPED 247
>gi|167746683|ref|ZP_02418810.1| hypothetical protein ANACAC_01394 [Anaerostipes caccae DSM 14662]
gi|167653643|gb|EDR97772.1| tRNA pseudouridine synthase A [Anaerostipes caccae DSM 14662]
Length = 249
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 137/252 (54%), Gaps = 12/252 (4%)
Query: 52 RLVIAYDGTRYAGWQF---QTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
RL I YDGTRY GWQ + TIQ +E L +K+ E ++++G+ RTD GVHA
Sbjct: 7 RLKIEYDGTRYQGWQKLGKNANASTIQGKLESVL---SKMTGESIQIIGSGRTDAGVHAC 63
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQ+A+F T S+ E I L LP DI + FH+R +AK K Y Y+I
Sbjct: 64 GQIANFHTDCSFSCRE-IKEYLTKYLPSDIGIVTADEVSERFHSRLNAKQKTYQYRIAIP 122
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
++ F+R Y + LN M +AA + +G HDF F +V++ + + V++++ +
Sbjct: 123 GTVNVFERKYLWKYPETLNIEKMNKAAAFCLGTHDFLGFSSVKKTKK--STVRTIYSIVI 180
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E + ++L G GFLY VR + L +IG P+ + + ++DRK+ ++A
Sbjct: 181 EEEHSEIRLSFTGDGFLYNMVRILTGTLAEIGAGTRDPESIFHVFQSKDRKDA---GITA 237
Query: 289 PPHGLCLVEVKY 300
PPHGL L+ V+Y
Sbjct: 238 PPHGLFLMNVEY 249
>gi|320107224|ref|YP_004182814.1| pseudouridine synthase I TruA [Terriglobus saanensis SP1PR4]
gi|319925745|gb|ADV82820.1| Pseudouridine synthase I, TruA, alpha/beta domain protein
[Terriglobus saanensis SP1PR4]
Length = 287
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/284 (36%), Positives = 142/284 (50%), Gaps = 27/284 (9%)
Query: 40 PPTDDSFPGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGAS 99
P +D S WRL +AYDGT +AGWQ Q PTIQ + A+ VT E++ G+
Sbjct: 6 PISDASTSLQAWRLKLAYDGTDFAGWQVQPGLPTIQGSLASAIRSVTS---EEVLPQGSG 62
Query: 100 RTDTGVHAWGQVA--HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAK 157
RTD GVHA GQV P D L+ ALN +LP IRV E PEFHAR
Sbjct: 63 RTDAGVHALGQVVSLKLAVPIPPDNLKR---ALNRILPTSIRVLEAGIVAPEFHARRGVL 119
Query: 158 SKIYHYKIY--------NDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV- 208
SK Y Y ++ + V P + + + L+ M QAAE FVG HDF++F
Sbjct: 120 SKTYRYTLFLCRPTKDVEEIVCSPERARWVWQYPAPLDVAAMMQAAERFVGTHDFTSFAA 179
Query: 209 -NVQRNDRLL------NPVKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGK 261
+ +R RL + +++++ G L +V GSGFL+ VRN+V + +G
Sbjct: 180 NDPERKTRLEAESNAPDNIRTLYSSAWTLCGDELSYQVRGSGFLHHMVRNLVGTCVDVGA 239
Query: 262 EAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEVKYNEEHL 305
I + KIL ++R +APP GL L+EV+Y E L
Sbjct: 240 GRILATEMEKILVAKNRGAAGP---TAPPQGLSLLEVEYGSEDL 280
>gi|161506903|ref|YP_001576857.1| tRNA pseudouridine synthase A [Lactobacillus helveticus DPC 4571]
gi|260102386|ref|ZP_05752623.1| tRNA pseudouridine synthase A [Lactobacillus helveticus DSM 20075]
gi|172048171|sp|A8YTB0.1|TRUA_LACH4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|160347892|gb|ABX26566.1| tRNA pseudouridine synthase A [Lactobacillus helveticus DPC 4571]
gi|260083830|gb|EEW67950.1| tRNA pseudouridine synthase A [Lactobacillus helveticus DSM 20075]
Length = 263
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 144/257 (56%), Gaps = 9/257 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ +AYDG + G+Q Q T+Q VE AL ++TK +R + + G+ RTD GVHA G
Sbjct: 4 RYKMTMAYDGHLFHGFQLQPDQRTVQGTVEDALKKMTKGKR--IIVQGSGRTDAGVHAIG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + ALN ++P DI FHAR+S K K Y Y++ D
Sbjct: 62 QVIHFDYPGKTIPANRMILALNSMMPTDIIFNNCEIVNENFHARYSIKGKWYRYRVSLDH 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
++PF+R Y H Y L+ M++AA+ +GKHDF++F ++ + V++++ ++
Sbjct: 122 FVNPFKRFYTGHFSYALDVGKMQEAAKDLLGKHDFTSF--AASGGQIEDKVRTIYYVNIA 179
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E + + GSGFLY VR MVA LL+IG P + +++A +DR+E+ + +
Sbjct: 180 KDEKENEIVFDFIGSGFLYNMVRIMVAALLEIGNGRRPVHDLKRVIAAKDRQEVRQ---T 236
Query: 288 APPHGLCLVEVKYNEEH 304
A GL L V Y+E H
Sbjct: 237 AQASGLYLYHVFYDEYH 253
>gi|290968602|ref|ZP_06560140.1| tRNA pseudouridine synthase A [Megasphaera genomosp. type_1 str.
28L]
gi|290781255|gb|EFD93845.1| tRNA pseudouridine synthase A [Megasphaera genomosp. type_1 str.
28L]
Length = 264
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 135/254 (53%), Gaps = 9/254 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L++AYDGT + G+Q QT+ +IQ +E+AL R+ + E + + GA+RTD GVHA GQV
Sbjct: 9 LIVAYDGTDFHGFQRQTNASSIQQYIEEALTRIFQ---EPITVYGAARTDAGVHARGQVV 65
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F S ++ I A+ LPP I V + F R K Y Y+I N AV D
Sbjct: 66 NFYASGSIP-VDKIPYAMKAYLPPTIAVLQAREMASHFSVRHDNCGKHYCYRIVNRAVPD 124
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
PFQ Y++ L+ MRQ A +G HDFSAF +N +NP+K+++ + +
Sbjct: 125 PFQLRYSWFIRKPLDVEAMRQGANILLGTHDFSAFEG--KNTTPMNPIKTMYAVQIQKNR 182
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+++ V G GFLY VRNM L IG +IL DRK+L +AP G
Sbjct: 183 DNVEIHVIGDGFLYHMVRNMAGGLADIGLHRFTTIHFRRILKGLDRKKLGA---TAPAGG 239
Query: 293 LCLVEVKYNEEHLR 306
LCL EV Y E R
Sbjct: 240 LCLEEVFYTEARRR 253
>gi|222529670|ref|YP_002573552.1| tRNA pseudouridine synthase A [Caldicellulosiruptor bescii DSM
6725]
gi|254789602|sp|B9MKC1.1|TRUA_ANATD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|222456517|gb|ACM60779.1| tRNA pseudouridine synthase A [Caldicellulosiruptor bescii DSM
6725]
Length = 244
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 137/248 (55%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I YDGT Y GWQ Q + TIQ +E+A + KL E++ L+G+ RTD GVHA Q A
Sbjct: 6 LTIEYDGTGYFGWQKQPNKKTIQGTIEEA---IKKLTGEEVNLIGSGRTDRGVHALNQKA 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T S + ALN +LP DI +++ A +F AR+SA+ K Y Y IYN
Sbjct: 63 NFKTS-SKIPTDKFPLALNSVLPGDISIKDAVEAPLDFSARYSARQKTYKYLIYNKKSRP 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
R+YAY+ Y+L+ M++A EYF+G++DF +F + + ++ V+ +
Sbjct: 122 ALLRNYAYYYPYQLDVDAMQRACEYFIGEYDFKSFCSADSEAK--TTIRRVYNAYLTFEN 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ + + +GFLY R + +L +G + P +P I+ ++DR + K + PP G
Sbjct: 180 ECIAIYITANGFLYNMARIIAGTILDVGAGKLKPMDIPLIIESKDRTKAGK---TLPPWG 236
Query: 293 LCLVEVKY 300
L LV+V Y
Sbjct: 237 LYLVDVVY 244
>gi|299820989|ref|ZP_07052878.1| tRNA-pseudouridine synthase I [Listeria grayi DSM 20601]
gi|299818010|gb|EFI85245.1| tRNA-pseudouridine synthase I [Listeria grayi DSM 20601]
Length = 247
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 142/252 (56%), Gaps = 7/252 (2%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++++AYDG+ ++G+Q Q T+Q +E+AL+++ K E +R+ + RTDTGVHA G
Sbjct: 3 RYKVILAYDGSGFSGYQVQPHKRTVQSELEEALLKMHK--GEFVRVTASGRTDTGVHAAG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF +P E AL + P DI + + +FHAR+ K Y Y I N
Sbjct: 61 QVIHFDSPLQIPN-EKFQRALQRMTPFDIGIHSVEQVPDDFHARYGTVGKEYRYVIKNST 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
DPF R++A H Y L+ M++A++ +G+HDF++F + + + V++++ + +
Sbjct: 120 DYDPFSRNFALHYPYPLSIEKMQEASQILIGEHDFTSFCSARTEQD--SKVRTIYSIEFL 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ + + G GFLY VR + LL IG+ + + + K L +DR +L +++AP
Sbjct: 178 KEKETITICYRGDGFLYNMVRILTGALLDIGQGRMTAETLEKALQAKDRTKLP--SVTAP 235
Query: 290 PHGLCLVEVKYN 301
GL L EV Y
Sbjct: 236 AQGLYLWEVAYK 247
>gi|449881743|ref|ZP_21784619.1| tRNA pseudouridine synthase A [Streptococcus mutans SA38]
gi|449926715|ref|ZP_21800914.1| tRNA pseudouridine synthase A [Streptococcus mutans 4SM1]
gi|449960287|ref|ZP_21810574.1| tRNA pseudouridine synthase A [Streptococcus mutans 4VF1]
gi|449963897|ref|ZP_21811048.1| tRNA pseudouridine synthase A [Streptococcus mutans 15VF2]
gi|449975279|ref|ZP_21815725.1| tRNA pseudouridine synthase A [Streptococcus mutans 11VS1]
gi|450138245|ref|ZP_21872075.1| tRNA pseudouridine synthase A [Streptococcus mutans NLML1]
gi|449160441|gb|EMB63709.1| tRNA pseudouridine synthase A [Streptococcus mutans 4SM1]
gi|449167745|gb|EMB70609.1| tRNA pseudouridine synthase A [Streptococcus mutans 4VF1]
gi|449173007|gb|EMB75603.1| tRNA pseudouridine synthase A [Streptococcus mutans 15VF2]
gi|449177142|gb|EMB79456.1| tRNA pseudouridine synthase A [Streptococcus mutans 11VS1]
gi|449234218|gb|EMC33238.1| tRNA pseudouridine synthase A [Streptococcus mutans NLML1]
gi|449250917|gb|EMC48955.1| tRNA pseudouridine synthase A [Streptococcus mutans SA38]
Length = 249
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 143/255 (56%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDGT ++G+Q Q T+Q +EK L+R+ + +++ GA RTD GVHA+G
Sbjct: 3 RYKAIISYDGTNFSGFQRQPQMRTVQEEIEKTLLRLN--SGQAVKIHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + L+ P DI V ++ +FHAR+ K Y + +
Sbjct: 61 QVIHFDLPQQRD-LEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHRKTYEFLVDLGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV- 228
+P RHYA H YK++ ++++ A + G HDF+ F + + N V+++ R V
Sbjct: 120 PKNPLMRHYATHFPYKVDFSVVKAAIKKLRGTHDFTGFTAAGTS--VENKVRTISRATVE 177
Query: 229 -IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ L GSGFLY+QVRNMV LL+IG +P D + +IL + DR LA +
Sbjct: 178 KDDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDR-SLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E+ Y++
Sbjct: 235 AASNGLYLKEIIYDD 249
>gi|381181844|ref|ZP_09890672.1| tRNA pseudouridine synthase A [Listeriaceae bacterium TTU M1-001]
gi|380318219|gb|EIA21510.1| tRNA pseudouridine synthase A [Listeriaceae bacterium TTU M1-001]
Length = 248
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 144/255 (56%), Gaps = 12/255 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDL-RLVGASRTDTGVHAW 108
+++ V+AYDG+ + G+Q Q + T+Q +EKAL K+ + D R+ + RTDTGVHA
Sbjct: 3 RYKAVLAYDGSGFVGYQVQPNGRTVQEEIEKAL---KKMHKGDFSRITASGRTDTGVHAV 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF +P + E AL P DI + +FHARF K Y Y I
Sbjct: 60 GQVIHFDSPLHIEP-EKFRIALQMGTPRDISFHSVEKVADDFHARFDVTGKEYRYMIDRS 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
+ +PF+R++A H Y+LN M+ AA+ +G+HDF++F + + + V+++++ ++
Sbjct: 119 KIFNPFKRNFALHFPYQLNVEKMKSAAKLLIGEHDFTSFCSARAVQE--SKVRTIYQIEI 176
Query: 229 IEMG-ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAI-PPDIVPKILATQDRKELAKYAL 286
E+ L + GSGFLY VR + +LL +G+ + PDI+ + ++R+ L +
Sbjct: 177 TEVDETTLMIAYRGSGFLYNMVRILTGVLLDVGQNKLGEPDIL-RAFEARNRESLR--SK 233
Query: 287 SAPPHGLCLVEVKYN 301
+APP GL L EV Y
Sbjct: 234 TAPPEGLYLQEVFYK 248
>gi|336392514|ref|ZP_08573913.1| tRNA pseudouridine synthase A [Lactobacillus coryniformis subsp.
torquens KCTC 3535]
Length = 265
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/258 (37%), Positives = 142/258 (55%), Gaps = 13/258 (5%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLV--GASRTDTGVH 106
++++ IAYDGT++AG+Q Q T+Q ++EKA V + + R+V G+ RTD GVH
Sbjct: 6 LRYKVTIAYDGTQFAGFQLQVKQRTVQGVMEKA---VRTIAKSPTRIVVNGSGRTDAGVH 62
Query: 107 AWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIY 166
A GQV HF PF+ ++ ALN LLP D+ V++ A FHAR+ K Y Y++
Sbjct: 63 ALGQVVHFDFPFALPA-AAMLKALNSLLPLDVVVKDCQVADSGFHARYDTTGKRYVYRVS 121
Query: 167 NDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRF 226
DPF+R Y H Y L+ + A F+G HDFS+F + N V+++F
Sbjct: 122 RGYYTDPFRRFYTGHWKYALDVDKIELALNDFIGTHDFSSF--AASGGSIKNKVRTIFAA 179
Query: 227 DVIEMGALLQL--EVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
V E A +L E G+GFLY VR MV + L+IG P + ++ +DR + A+Y
Sbjct: 180 TVTEDPASDELIFEFYGNGFLYNMVRIMVGVALEIGNGRRPVHDILRLYEVKDRTQ-ARY 238
Query: 285 ALSAPPHGLCLVEVKYNE 302
+AP GL L +V Y +
Sbjct: 239 --TAPASGLYLKKVYYGD 254
>gi|293364991|ref|ZP_06611708.1| tRNA pseudouridine synthase A [Streptococcus oralis ATCC 35037]
gi|307703239|ref|ZP_07640185.1| tRNA pseudouridine synthase A [Streptococcus oralis ATCC 35037]
gi|291316441|gb|EFE56877.1| tRNA pseudouridine synthase A [Streptococcus oralis ATCC 35037]
gi|307623314|gb|EFO02305.1| tRNA pseudouridine synthase A [Streptococcus oralis ATCC 35037]
Length = 249
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 138/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA
Sbjct: 3 RYKATISYDGFAFAGFQRQPHARSVQEEIEKTLTRLNK--GQAIAVHGAGRTDSGVHALE 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIEIVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M++A + G HDF+ F D++ ++ D
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQEAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLSVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|450143500|ref|ZP_21873480.1| tRNA pseudouridine synthase A [Streptococcus mutans 1ID3]
gi|449152121|gb|EMB55836.1| tRNA pseudouridine synthase A [Streptococcus mutans 1ID3]
Length = 249
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 142/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDGT ++G+Q Q T+Q +EK L+R+ + +++ GA RTD GVHA+G
Sbjct: 3 RYKAIISYDGTNFSGFQRQPQMRTVQEEIEKTLLRLN--SGQAVKIYGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + L+ P DI V ++ +FHAR+ K Y + +
Sbjct: 61 QVIHFDLPQQRD-LEKLRFGLDTQTPDDIDVIQVEQVADDFHARYHKHRKTYEFLVDLGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV- 228
+P RHYA H YK++ ++++ A + G HDF+ F + N V+++ R V
Sbjct: 120 PKNPLMRHYATHFPYKVDFSVVKAAIKKLRGTHDFTGF--TASGTSVENKVRTISRATVE 177
Query: 229 -IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ L GSGFLY+QVRNMV LL+IG +P D + +IL + DR LA +
Sbjct: 178 KDDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDR-SLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E+ Y++
Sbjct: 235 AASNGLYLKEIIYDD 249
>gi|254931132|ref|ZP_05264491.1| tRNA pseudouridine synthase A [Listeria monocytogenes HPB2262]
gi|405750943|ref|YP_006674409.1| tRNA pseudouridine synthase A [Listeria monocytogenes ATCC 19117]
gi|417318578|ref|ZP_12105153.1| tRNA pseudouridine synthase A [Listeria monocytogenes J1-220]
gi|424824348|ref|ZP_18249361.1| tRNA pseudouridine synthase A 1 [Listeria monocytogenes str. Scott
A]
gi|293582680|gb|EFF94712.1| tRNA pseudouridine synthase A [Listeria monocytogenes HPB2262]
gi|328469771|gb|EGF40688.1| tRNA pseudouridine synthase A [Listeria monocytogenes J1-220]
gi|332313028|gb|EGJ26123.1| tRNA pseudouridine synthase A 1 [Listeria monocytogenes str. Scott
A]
gi|404220143|emb|CBY71507.1| tRNA pseudouridine synthase A [Listeria monocytogenes ATCC 19117]
Length = 248
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 143/253 (56%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG+ + G+Q Q + T+Q +EKAL ++ K + +R+ + RTDTGVHA G
Sbjct: 3 RYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHK--GKTVRIKASGRTDTGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + E AL + P DI + +FHARF K Y Y +
Sbjct: 61 QVIHFDSELDITA-EKFQKALQVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRTK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ DPF R++A H Y+L+ + M+ A++ +G+HDF++F + R +R + V++++ D
Sbjct: 120 IFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSA-RTER-DSKVRTLYSIDFY 177
Query: 230 EM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E L + +G+GFLY VR + LL G++ I PD + + L +DR++L + +A
Sbjct: 178 EEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQDRISPDDISEALLARDRQKLI--SKTA 235
Query: 289 PPHGLCLVEVKYN 301
PP GL L V Y
Sbjct: 236 PPQGLYLWRVDYE 248
>gi|322386788|ref|ZP_08060412.1| tRNA pseudouridine synthase A [Streptococcus cristatus ATCC 51100]
gi|417922211|ref|ZP_12565700.1| tRNA pseudouridine synthase A [Streptococcus cristatus ATCC 51100]
gi|321269070|gb|EFX52006.1| tRNA pseudouridine synthase A [Streptococcus cristatus ATCC 51100]
gi|342833099|gb|EGU67387.1| tRNA pseudouridine synthase A [Streptococcus cristatus ATCC 51100]
Length = 249
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 138/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKALISYDGHDFAGFQRQPHARSVQEEIEKTLTRINK--GQPIVIHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + D E + AL+ P DI V + +FHAR+ SK Y + +
Sbjct: 61 QVIHFDLPSARDE-EKLRFALDTQTPEDIDVISVEEVTEDFHARYKPHSKTYEFLVDIGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P RHYA H Y L LM QA + G HDF+ F +++ K+ FD
Sbjct: 120 PKNPMMRHYATHYPYPLEIPLMEQAIKALEGTHDFTGFTASGTSVENKVRTITKASLTFD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
L G+GFLY+Q+RNMV LL+IG + +P + + +IL +DR +LA +
Sbjct: 180 A--QRNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVNQIERILEEKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E+ Y E
Sbjct: 235 AAPNGLYLKEIIYEE 249
>gi|365905446|ref|ZP_09443205.1| tRNA pseudouridine synthase A [Lactobacillus versmoldensis KCTC
3814]
Length = 248
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 146/254 (57%), Gaps = 10/254 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++L IAYDG ++ G+Q Q + T+Q ++EKAL ++TK +++ LVG+ RTD GVHA+G
Sbjct: 3 RYKLTIAYDGAKFHGFQSQPNLRTVQGVIEKALSKMTK--GKEIILVGSGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P Y E++ A+N L+P DI V++ +FHAR+ K K Y Y++
Sbjct: 61 QVIHFDYP-GYIPAENMLKAINSLMPLDIVVKDSQIVDEDFHARYGVKRKTYLYRVDCGH 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
DPF+R YA H Y + ++ A + +G+HDFS+F + N V++++ V
Sbjct: 120 YTDPFKRFYAGHYSYSYDLEKIQTALKDLIGEHDFSSF--AASGGVIENKVRTIYEAQVK 177
Query: 230 EM--GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ L E G+GFLY VR +VA +L+IG P ++ +DR+E +
Sbjct: 178 YLPDENELVFEFTGNGFLYNMVRILVATVLEIGSGRRPVHDFIRLFEVKDRQEARG---T 234
Query: 288 APPHGLCLVEVKYN 301
AP +GL L +V Y+
Sbjct: 235 APANGLYLKKVFYD 248
>gi|436840540|ref|YP_007324918.1| tRNA pseudouridine synthase A [Desulfovibrio hydrothermalis AM13 =
DSM 14728]
gi|432169446|emb|CCO22814.1| tRNA pseudouridine synthase A [Desulfovibrio hydrothermalis AM13 =
DSM 14728]
Length = 276
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/276 (36%), Positives = 149/276 (53%), Gaps = 25/276 (9%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L +AYDGT + GWQFQ + T+Q +EKA+ +T +R+ G+ RTD+GVHA GQ+
Sbjct: 14 KLTLAYDGTDFCGWQFQPNLRTVQGELEKAISHITGFP---VRVHGSGRTDSGVHARGQI 70
Query: 112 AHFITPFSYDGLESI--HAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIY--N 167
H P D S+ +LN LLP D+ V + + +FH+RFS K Y Y I+ N
Sbjct: 71 VHLDLP---DNRTSVPWQKSLNSLLPDDVTVLDCAYVSGDFHSRFSTVRKRYSYSIWVEN 127
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
D P++R Y + L+ M QA + F+G HDF++F N+ + + V++V F
Sbjct: 128 DFCF-PWRRKYVW-KCGSLDLDAMDQAMKMFLGMHDFASFQNM--GTEVNSTVRNVLEFS 183
Query: 228 VI--EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
E ++L+V G+GFL + VRNMV L++IG+ P+ V +L +DR
Sbjct: 184 RRPGETPHEIKLDVCGTGFLKQMVRNMVGCLVKIGRGKEKPEFVRSLLQMKDR---TMAP 240
Query: 286 LSAPPHGLCLVEVKYNEEHLRLPAACPLSSFGRHHS 321
+AP GLCL V Y E + C S GR+ S
Sbjct: 241 ATAPARGLCLERVYYGE------SDCGGSDTGRNQS 270
>gi|449892202|ref|ZP_21788320.1| tRNA pseudouridine synthase A [Streptococcus mutans SF12]
gi|449896854|ref|ZP_21789971.1| tRNA pseudouridine synthase A [Streptococcus mutans R221]
gi|449903248|ref|ZP_21792043.1| tRNA pseudouridine synthase A [Streptococcus mutans M230]
gi|449931466|ref|ZP_21802379.1| tRNA pseudouridine synthase A [Streptococcus mutans 3SN1]
gi|449970439|ref|ZP_21813823.1| tRNA pseudouridine synthase A [Streptococcus mutans 2VS1]
gi|450057822|ref|ZP_21842779.1| tRNA pseudouridine synthase A [Streptococcus mutans NLML4]
gi|450072303|ref|ZP_21848524.1| tRNA pseudouridine synthase A [Streptococcus mutans M2A]
gi|450092816|ref|ZP_21856257.1| tRNA pseudouridine synthase A [Streptococcus mutans W6]
gi|450106299|ref|ZP_21860423.1| tRNA pseudouridine synthase A [Streptococcus mutans SF14]
gi|450148064|ref|ZP_21875421.1| tRNA pseudouridine synthase A [Streptococcus mutans 14D]
gi|450164091|ref|ZP_21881128.1| tRNA pseudouridine synthase A [Streptococcus mutans B]
gi|450176989|ref|ZP_21886146.1| tRNA pseudouridine synthase A [Streptococcus mutans SM1]
gi|449162563|gb|EMB65693.1| tRNA pseudouridine synthase A [Streptococcus mutans 3SN1]
gi|449173404|gb|EMB75980.1| tRNA pseudouridine synthase A [Streptococcus mutans 2VS1]
gi|449204668|gb|EMC05455.1| tRNA pseudouridine synthase A [Streptococcus mutans NLML4]
gi|449211333|gb|EMC11738.1| tRNA pseudouridine synthase A [Streptococcus mutans M2A]
gi|449217818|gb|EMC17849.1| tRNA pseudouridine synthase A [Streptococcus mutans W6]
gi|449223405|gb|EMC23094.1| tRNA pseudouridine synthase A [Streptococcus mutans SF14]
gi|449236306|gb|EMC35229.1| tRNA pseudouridine synthase A [Streptococcus mutans 14D]
gi|449242335|gb|EMC40928.1| tRNA pseudouridine synthase A [Streptococcus mutans B]
gi|449244279|gb|EMC42660.1| tRNA pseudouridine synthase A [Streptococcus mutans SM1]
gi|449256256|gb|EMC54086.1| tRNA pseudouridine synthase A [Streptococcus mutans SF12]
gi|449261426|gb|EMC58902.1| tRNA pseudouridine synthase A [Streptococcus mutans M230]
gi|449261550|gb|EMC59022.1| tRNA pseudouridine synthase A [Streptococcus mutans R221]
Length = 249
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 142/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDGT ++G+Q Q T+Q +EK L+R+ + +++ GA RTD GVHA+G
Sbjct: 3 RYKAIISYDGTNFSGFQRQPQMRTVQEEIEKTLLRLN--SGQAVKIHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + L+ P DI V ++ +FHAR+ K Y + +
Sbjct: 61 QVIHFDLPQQRD-LEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHRKTYEFLVDLGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV- 228
+P RHYA H YK++ ++++ A + G HDF+ F + N V+++ R V
Sbjct: 120 PKNPLMRHYATHFPYKVDFSVVKAAIKKLRGTHDFTGF--TASGTSVENKVRTISRATVE 177
Query: 229 -IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ L GSGFLY+QVRNMV LL+IG +P D + +IL + DR LA +
Sbjct: 178 KDDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDR-SLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E+ Y++
Sbjct: 235 AASNGLYLKEIIYDD 249
>gi|24378608|ref|NP_720563.1| tRNA pseudouridine synthase A [Streptococcus mutans UA159]
gi|397648877|ref|YP_006489404.1| tRNA pseudouridine synthase A [Streptococcus mutans GS-5]
gi|449866541|ref|ZP_21779563.1| tRNA pseudouridine synthase A [Streptococcus mutans U2B]
gi|449869723|ref|ZP_21780249.1| tRNA pseudouridine synthase A [Streptococcus mutans 8ID3]
gi|449876482|ref|ZP_21782813.1| tRNA pseudouridine synthase A [Streptococcus mutans S1B]
gi|449885732|ref|ZP_21785773.1| tRNA pseudouridine synthase A [Streptococcus mutans SA41]
gi|449911210|ref|ZP_21795031.1| tRNA pseudouridine synthase A [Streptococcus mutans OMZ175]
gi|449916643|ref|ZP_21796978.1| tRNA pseudouridine synthase A [Streptococcus mutans 15JP3]
gi|449943071|ref|ZP_21806268.1| tRNA pseudouridine synthase A [Streptococcus mutans 11A1]
gi|449985967|ref|ZP_21819969.1| tRNA pseudouridine synthase A [Streptococcus mutans NFSM2]
gi|449995390|ref|ZP_21822981.1| tRNA pseudouridine synthase A [Streptococcus mutans A9]
gi|450041028|ref|ZP_21837161.1| tRNA pseudouridine synthase A [Streptococcus mutans T4]
gi|450077661|ref|ZP_21850578.1| tRNA pseudouridine synthase A [Streptococcus mutans N3209]
gi|450115557|ref|ZP_21863985.1| tRNA pseudouridine synthase A [Streptococcus mutans ST1]
gi|38258780|sp|Q8DWH1.1|TRUA_STRMU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|24376463|gb|AAN57869.1|AE014860_6 putative tRNA pseudouridine synthase A [Streptococcus mutans UA159]
gi|392602446|gb|AFM80610.1| tRNA pseudouridine synthase A [Streptococcus mutans GS-5]
gi|449149680|gb|EMB53471.1| tRNA pseudouridine synthase A [Streptococcus mutans 11A1]
gi|449155015|gb|EMB58551.1| tRNA pseudouridine synthase A [Streptococcus mutans 15JP3]
gi|449157859|gb|EMB61293.1| tRNA pseudouridine synthase A [Streptococcus mutans 8ID3]
gi|449178575|gb|EMB80831.1| tRNA pseudouridine synthase A [Streptococcus mutans NFSM2]
gi|449184577|gb|EMB86513.1| tRNA pseudouridine synthase A [Streptococcus mutans A9]
gi|449198203|gb|EMB99328.1| tRNA pseudouridine synthase A [Streptococcus mutans T4]
gi|449210881|gb|EMC11308.1| tRNA pseudouridine synthase A [Streptococcus mutans N3209]
gi|449227841|gb|EMC27239.1| tRNA pseudouridine synthase A [Streptococcus mutans ST1]
gi|449252317|gb|EMC50300.1| tRNA pseudouridine synthase A [Streptococcus mutans S1B]
gi|449255008|gb|EMC52890.1| tRNA pseudouridine synthase A [Streptococcus mutans SA41]
gi|449258568|gb|EMC56141.1| tRNA pseudouridine synthase A [Streptococcus mutans OMZ175]
gi|449263711|gb|EMC61076.1| tRNA pseudouridine synthase A [Streptococcus mutans U2B]
Length = 249
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 142/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDGT ++G+Q Q T+Q +EK L+R+ + +++ GA RTD GVHA+G
Sbjct: 3 RYKAIISYDGTNFSGFQRQPQVRTVQEEIEKTLLRLN--SGQAVKIHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + L+ P DI V ++ +FHAR+ K Y + +
Sbjct: 61 QVIHFDLPQQRD-LEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHRKTYEFLVDLGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV- 228
+P RHYA H YK++ ++++ A + G HDF+ F + N V+++ R V
Sbjct: 120 PKNPLMRHYATHFPYKVDFSVVKAAIKKLRGTHDFTGF--TASGTSVENKVRTISRATVE 177
Query: 229 -IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ L GSGFLY+QVRNMV LL+IG +P D + +IL + DR LA +
Sbjct: 178 KDDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDR-SLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E+ Y++
Sbjct: 235 AASNGLYLKEIIYDD 249
>gi|335029188|ref|ZP_08522700.1| tRNA pseudouridine synthase A [Streptococcus infantis SK1076]
gi|334269589|gb|EGL88006.1| tRNA pseudouridine synthase A [Streptococcus infantis SK1076]
Length = 249
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L ++ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLAKLNK--GQAITIHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIEIVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M+ A + G HDF+ F +++ ++ R D
Sbjct: 120 PKNPMRRHYATHYPYSLDVERMQLAVKKLEGTHDFTGFTASGTSVENKVRTITEASLRVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG + + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMSIEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|205372037|ref|ZP_03224854.1| tRNA pseudouridine synthase A [Bacillus coahuilensis m4-4]
Length = 251
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 138/253 (54%), Gaps = 9/253 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ + YDGT YAG+Q Q + TIQ +EK L K+ + +R+ + RTD GVHA GQV
Sbjct: 8 KCTVQYDGTWYAGYQVQPNSKTIQGEIEKVL---EKIHGKPIRISASGRTDAGVHAIGQV 64
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF T + +E N LP DI V + FH+RF + K Y YK+Y
Sbjct: 65 FHFDTDTKFP-VEKWLPIFNSQLPNDIVVIHVEEVAGSFHSRFGSIEKEYRYKVYRAPHK 123
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
PF H+AYH + L+ M +A+ Y +G HDF++F + + + + V+++F + E
Sbjct: 124 SPFLIHHAYHVPHSLSVQKMEEASRYLLGTHDFTSFCSAK--TEVEDKVRTIFTISIEEE 181
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
+L + G+GFLY VR ++ +L+++G+ P V +IL +DR+ K +AP
Sbjct: 182 ENMLTFSLVGNGFLYNMVRIIIGVLIEVGQGKRAPIEVKEILEAKDRRAGGK---TAPAQ 238
Query: 292 GLCLVEVKYNEEH 304
GL L VKY+ ++
Sbjct: 239 GLYLYRVKYSNDN 251
>gi|149797294|ref|YP_001294664.1| tRNA-pseudouridine synthase A [Symbiobacterium thermophilum IAM
14863]
Length = 267
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 137/252 (54%), Gaps = 9/252 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRL-VGASRTDTGVHAWGQ 110
+L++AYDGT YAG+Q Q + TIQ +E+AL VT DLR+ A RTD GVHA GQ
Sbjct: 5 KLILAYDGTAYAGFQRQPNGITIQQRLEEALRAVTG--EPDLRIGAAAGRTDAGVHARGQ 62
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
V H T ++ ++ AALNG LP DI V A P+FHAR+ A+ K Y Y
Sbjct: 63 VVHLRT-YATIPIDRWPAALNGHLPDDIAVIGAEEAPPDFHARYWAREKRYRYTFCLSPY 121
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
P R Y+YH ++ MR+AA VG+HDF+AF + R V+++ R + E
Sbjct: 122 RLPMARLYSYHWHRPVDVDAMRRAAALLVGRHDFAAFRATGGSAR--TTVRTITRLTLTE 179
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
L L+V GFLY VR + LL++G D V + L R++ + + PP
Sbjct: 180 EPPFLHLDVTADGFLYNMVRIIAGTLLEVGAGRRSLDRVAQALRHGRREDAGR---TLPP 236
Query: 291 HGLCLVEVKYNE 302
HGLCL EV Y +
Sbjct: 237 HGLCLEEVVYGD 248
>gi|450120607|ref|ZP_21865803.1| tRNA pseudouridine synthase A [Streptococcus mutans ST6]
gi|449230100|gb|EMC29379.1| tRNA pseudouridine synthase A [Streptococcus mutans ST6]
Length = 249
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 143/255 (56%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDGT ++G+Q Q T+Q +EK L+R+ + +++ GA RTD GVHA+G
Sbjct: 3 RYKAIISYDGTNFSGFQRQPQMRTVQEEIEKTLLRLN--SGQAVKVHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + L+ P DI V ++ +FHAR+ K Y + +
Sbjct: 61 QVIHFDLPQQRD-LEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHRKTYEFLVDLGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV- 228
+P RHYA H YK++ ++++ A + G HDF+ F + + N V+++ R V
Sbjct: 120 PKNPLMRHYATHFPYKVDFSVVKAAIKKLRGTHDFTGFTAAGTS--VENKVRTISRATVE 177
Query: 229 -IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ L GSGFLY+QVRNMV LL+IG +P D + +IL + DR LA +
Sbjct: 178 KDDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDR-SLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E+ Y++
Sbjct: 235 AASNGLYLKEIIYDD 249
>gi|251778715|ref|ZP_04821635.1| tRNA pseudouridine synthase A [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|243083030|gb|EES48920.1| tRNA pseudouridine synthase A [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 244
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 134/249 (53%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+I +DGT + GWQ Q T+Q +E A++++T E G+SRTD GVHA V
Sbjct: 5 KLIIEFDGTNFCGWQRQVKDRTVQGCLENAILKITG---EKSLTNGSSRTDGGVHAKAMV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+FIT S G E ALN LP DI + + EFHAR+S+K K+Y Y I N
Sbjct: 62 ANFITNSSIPG-EKFREALNTKLPDDISIIKSEEVDMEFHARYSSKGKMYSYTIVNRYEK 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
F + Y +H +LN M++A EYFVGKHDF AF++ + + V+++ F + E
Sbjct: 121 LAFGKQYLHHVRKELNVEDMKKACEYFVGKHDFKAFMSPGSSAK--TTVRTITDFYIEEN 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
++++ + GFLY VR +V L+ +G V I+ RK + PP+
Sbjct: 179 KNVIRIFISADGFLYNMVRIIVGTLINVGTGKTKLQDVNNIINDGIRKNA---GMCVPPN 235
Query: 292 GLCLVEVKY 300
GL L +V Y
Sbjct: 236 GLVLEKVFY 244
>gi|319760619|ref|YP_004124557.1| tRNA pseudouridine synthase A [Candidatus Blochmannia vafer str.
BVAF]
gi|318039333|gb|ADV33883.1| tRNA pseudouridine synthase A [Candidatus Blochmannia vafer str.
BVAF]
Length = 255
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 137/250 (54%), Gaps = 13/250 (5%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I YDG+RY GWQ Q + ++Q VE AL VT E + + A RTD+GVHA GQV
Sbjct: 6 LGIEYDGSRYCGWQKQKNGISVQDCVENALNIVTA---ESVSVFCAGRTDSGVHALGQVV 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
HF T Y + +N LP I +R +S +FHARFSA S+ Y+Y IYND +
Sbjct: 63 HFETDVKYSK-SAWTFGVNRYLPRSICIRWVSLMKQDFHARFSAVSRRYYYYIYNDKIRS 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAF--VNVQRNDRLLNPVKSVFRFDVIE 230
+H L+ M +AA+Y +G++DFSAF Q R N ++ VI
Sbjct: 122 AILFQKTWHYTKLLDVCKMSRAAQYLLGENDFSAFRSAGCQSYSRCRN----LYHLRVIR 177
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+G + ++++ + FLYR VRN+V L+++G P + ++L + R LA ++AP
Sbjct: 178 IGQCVIIDIQANSFLYRMVRNIVGSLVEVGCGNRPAIWILELLKSCKR-SLA--GMTAPA 234
Query: 291 HGLCLVEVKY 300
GL L EVKY
Sbjct: 235 DGLYLAEVKY 244
>gi|450061243|ref|ZP_21843700.1| tRNA pseudouridine synthase A [Streptococcus mutans NLML5]
gi|450083279|ref|ZP_21852829.1| tRNA pseudouridine synthase A [Streptococcus mutans N66]
gi|449207584|gb|EMC08255.1| tRNA pseudouridine synthase A [Streptococcus mutans NLML5]
gi|449213535|gb|EMC13867.1| tRNA pseudouridine synthase A [Streptococcus mutans N66]
Length = 249
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 143/255 (56%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDGT ++G+Q Q T+Q +EK L+R+ + +++ GA RTD GVHA+G
Sbjct: 3 RYKAIISYDGTNFSGFQRQPQMRTVQEEIEKTLLRLN--SGQAVKIHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + L+ P DI V ++ +FHAR+ K Y + +
Sbjct: 61 QVIHFDLPQQRD-LEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHRKTYEFLVDLGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV- 228
+P RHYA H YK++ ++++ A + G HDF+ F + + N ++++ R V
Sbjct: 120 PKNPLMRHYATHFPYKVDFSVVKAAIKKLRGTHDFTGFTAAGTS--VENKIRTISRATVE 177
Query: 229 -IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ L GSGFLY+QVRNMV LL+IG +P D + +IL + DR LA +
Sbjct: 178 KDDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDR-SLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E+ Y++
Sbjct: 235 AASNGLYLKEIIYDD 249
>gi|417694487|ref|ZP_12343674.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47901]
gi|332201036|gb|EGJ15107.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47901]
Length = 249
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 140/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFILDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P +RHYA H Y L+ M+ A + G HDF+ F + + V+++ +I
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGF--TASGTSVEDKVRTITEASLI 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|337286733|ref|YP_004626206.1| tRNA pseudouridine synthase A [Thermodesulfatator indicus DSM
15286]
gi|335359561|gb|AEH45242.1| tRNA pseudouridine synthase A [Thermodesulfatator indicus DSM
15286]
Length = 266
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 141/256 (55%), Gaps = 12/256 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L I+YDGT Y GWQ Q PTIQ ++E L R L ++L A RTD GVHA GQV
Sbjct: 5 KLTISYDGTNYLGWQKQKVGPTIQGVLEDTLKR---LLGHKIKLRAAGRTDAGVHALGQV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F+T LE +H ALN LLP DI + ++ +F+A++ A+ K Y Y+IYN +
Sbjct: 62 ANFLTTNKM-ALEDMHRALNALLPRDISIVKVEEVPIKFNAQYDARYKTYFYQIYNHPIR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD---V 228
+P R Y++ KL+ M+ FVG+ DF++F + V++V + V
Sbjct: 121 NPIVRLYSWWVPQKLDIEAMKACVPLFVGQKDFASFKKAGTETK--TTVRTVLSAELKRV 178
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ +L+ E+ G GFL VRN+V L+++G + + + IL +DR LA A
Sbjct: 179 PGVAGMLRFEISGRGFLRYMVRNIVGALVEVGLGKLTYEELASILEAKDR-SLA--PPPA 235
Query: 289 PPHGLCLVEVKYNEEH 304
PP GL L EV Y ++
Sbjct: 236 PPQGLFLKEVIYKDKR 251
>gi|450180363|ref|ZP_21887187.1| tRNA pseudouridine synthase A [Streptococcus mutans 24]
gi|449248339|gb|EMC46589.1| tRNA pseudouridine synthase A [Streptococcus mutans 24]
Length = 249
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 142/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDGT ++G+Q Q T+Q +EK L+R+ + +++ GA RTD GVHA+G
Sbjct: 3 RYKAIISYDGTNFSGFQRQPQMRTVQEEIEKTLLRLN--SGQAVKIHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + L+ P DI V ++ +FHAR+ K Y + +
Sbjct: 61 QVIHFDLPQQRD-LEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHRKTYEFLVDLGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV- 228
+P RHYA H YK++ ++++ A + G HDF+ F + N V+++ R V
Sbjct: 120 PKNPLMRHYATHFPYKVDFSVVKAAIKKLRGTHDFTGF--TASGTSVENKVRTISRATVE 177
Query: 229 -IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ L GSGFLY+QVRNMV LL+IG +P D + +IL + DR LA +
Sbjct: 178 KDDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDR-SLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E+ Y++
Sbjct: 235 AGSNGLYLKEIIYDD 249
>gi|410476973|ref|YP_006743732.1| tRNA-pseudouridine synthase I [Streptococcus pneumoniae gamPNI0373]
gi|444387096|ref|ZP_21185122.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PCS125219]
gi|444389302|ref|ZP_21187219.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PCS70012]
gi|444393635|ref|ZP_21191271.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PCS81218]
gi|444394589|ref|ZP_21192140.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0002]
gi|444398045|ref|ZP_21195528.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0006]
gi|444398888|ref|ZP_21196363.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0007]
gi|444402597|ref|ZP_21199756.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0008]
gi|444405386|ref|ZP_21202291.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0009]
gi|444407663|ref|ZP_21204330.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0010]
gi|444418829|ref|ZP_21214780.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0360]
gi|444419855|ref|ZP_21215690.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0427]
gi|406369918|gb|AFS43608.1| tRNA-pseudouridine synthase I [Streptococcus pneumoniae gamPNI0373]
gi|444254306|gb|ELU60752.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PCS125219]
gi|444257902|gb|ELU64235.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PCS70012]
gi|444258241|gb|ELU64568.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PCS81218]
gi|444259831|gb|ELU66140.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0002]
gi|444260702|gb|ELU67010.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0006]
gi|444266183|gb|ELU72151.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0008]
gi|444269624|gb|ELU75428.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0007]
gi|444271259|gb|ELU77010.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0010]
gi|444273832|gb|ELU79493.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0009]
gi|444280050|gb|ELU85427.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0360]
gi|444286041|gb|ELU91047.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae PNI0427]
Length = 249
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG + G+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFTGFQRQPHARSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFTVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P +RHYA H Y L+ M+ A + G HDF+ F + + V+++ +I
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGF--TASGTSVEDKVRTITEASLI 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|450050560|ref|ZP_21840344.1| tRNA pseudouridine synthase A [Streptococcus mutans NFSM1]
gi|449202513|gb|EMC03424.1| tRNA pseudouridine synthase A [Streptococcus mutans NFSM1]
Length = 249
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 144/255 (56%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDGT ++G+Q Q T+Q +EK L+R+ + +++ GA RTD GVHA+G
Sbjct: 3 RYKAIISYDGTNFSGFQRQPQMRTVQEEIEKTLLRLN--SGQAVKIHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + L+ P DI V ++ +FHAR+ K Y + +
Sbjct: 61 QVIHFDLPQQRD-LEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHRKTYEFLVDLGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P RHYA H YK++ ++++ A + G HDF+ F + + N V+++ R V
Sbjct: 120 PKNPLMRHYATHFPYKVDFSVVKVAIKKLRGTHDFTGFTAAGTS--VENKVRTISRATVE 177
Query: 230 EMG--ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ G L GSGFLY+QVRNMV LL+IG +P + + +IL + DR LA +
Sbjct: 178 KDGKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPINQIDRILESGDR-SLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E+ Y++
Sbjct: 235 AASNGLYLKEIIYDD 249
>gi|222100131|ref|YP_002534699.1| tRNA pseudouridine synthase ACD [Thermotoga neapolitana DSM 4359]
gi|254764873|sp|B9K8Q0.1|TRUA_THENN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|221572521|gb|ACM23333.1| tRNA pseudouridine synthase A [Thermotoga neapolitana DSM 4359]
Length = 245
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 139/246 (56%), Gaps = 10/246 (4%)
Query: 54 VIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAH 113
++ YDG+ + G+Q Q T+Q ++E AL R+ K + + A RTD GVHA GQ+
Sbjct: 7 IVEYDGSNFFGYQGQPDVRTVQGVIEDALERIFK---QRIYTQAAGRTDAGVHANGQLIA 63
Query: 114 FITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDP 173
F P E I A+N LP D+ V+++ FH RF K +IYHY I+ +
Sbjct: 64 FNCPNDRMTTEDIKNAMNANLPDDVYVKKVFEVPKNFHPRFDVKKRIYHYFIHTSREKNV 123
Query: 174 FQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGA 233
F R YA+ Y+L+ MR+AA+Y G HDF++F ++R +PV++++R ++ +G
Sbjct: 124 FLRKYAWWFPYELDLEAMRKAAKYLEGTHDFTSF-KTGSDER--DPVRTIYRIRILSLGK 180
Query: 234 -LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
++ + VEG FL R VRN+VA L+++G P+ + ++L +DR A +AP HG
Sbjct: 181 DMILIRVEGRSFLRRMVRNIVAALVKVGLRQWEPEKLKEVLEARDRSAAAG---TAPAHG 237
Query: 293 LCLVEV 298
L +V
Sbjct: 238 LYFYKV 243
>gi|114567807|ref|YP_754961.1| pseudouridylate synthase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|122317314|sp|Q0AUL4.1|TRUA_SYNWW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|114338742|gb|ABI69590.1| Pseudouridylate synthase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 249
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/252 (37%), Positives = 134/252 (53%), Gaps = 9/252 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L++ YDG+ Y G+Q Q + T+Q +EKA+ R++ E +V A RTD GVHAWGQV
Sbjct: 5 KLLLEYDGSNYHGFQLQKNANTVQAELEKAIYRLSG---ERATIVCAGRTDAGVHAWGQV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
F + + G + ALN LP DI+V E EF+ RF A K Y Y IY
Sbjct: 62 VAFDSCSTIPG-DRWAYALNSQLPEDIQVLESQETRAEFNPRFDALKKCYGYLIYRQKKK 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
F RHYA + L M++AAE G+ +F +F + R + +F + E
Sbjct: 121 ATFYRHYALCNTEPLKLEAMQEAAEILKGRQNFRSFCASGSSARTFE--REIFHCRLSEK 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G L L + GFLY VR + LL++GK PP + +I+A+QDR + +APP
Sbjct: 179 GPCLLLHIAADGFLYNMVRIITGTLLEVGKGKYPPQHLREIIASQDR---TRAGPTAPPQ 235
Query: 292 GLCLVEVKYNEE 303
GL L++V Y E+
Sbjct: 236 GLYLLQVFYPED 247
>gi|312127288|ref|YP_003992162.1| tRNA pseudouridine synthase a [Caldicellulosiruptor hydrothermalis
108]
gi|311777307|gb|ADQ06793.1| tRNA pseudouridine synthase A [Caldicellulosiruptor hydrothermalis
108]
Length = 244
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 135/248 (54%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I YDGT Y GWQ Q + TIQ +E+A + KL E++ L+G+ RTD GVHA Q A
Sbjct: 6 LTIEYDGTEYFGWQKQPNKKTIQGTIEEA---IKKLTGEEVNLIGSGRTDRGVHALNQKA 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T S + ALN +LP DI +++ F AR+SAK K Y Y IYN
Sbjct: 63 NFKTS-SKIPTDKFPLALNSVLPGDISIKDAVEVPLNFSARYSAKQKTYKYLIYNKNSRP 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
R+YAY+ Y+L+ M++A EYF+G++DF +F + + ++ V+ +
Sbjct: 122 ALLRNYAYYYPYQLDVDAMQRACEYFIGEYDFKSFCSADSEAK--TTIRRVYNSYLTFEN 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ + + +GFLY R + +L +G + P +P I+ ++DR + K + PP G
Sbjct: 180 ECIAIYITANGFLYNMARIIAGTILDVGAGKLKPMDIPLIIESKDRTKAGK---TLPPWG 236
Query: 293 LCLVEVKY 300
L LV+V Y
Sbjct: 237 LYLVDVVY 244
>gi|46908770|ref|YP_015159.1| tRNA pseudouridine synthase A [Listeria monocytogenes serotype 4b
str. F2365]
gi|47093538|ref|ZP_00231299.1| tRNA pseudouridine synthase A [Listeria monocytogenes str. 4b
H7858]
gi|226225144|ref|YP_002759251.1| pseudouridylate synthase I [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|254825041|ref|ZP_05230042.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J1-194]
gi|254992719|ref|ZP_05274909.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J2-064]
gi|255520577|ref|ZP_05387814.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J1-175]
gi|386733283|ref|YP_006206779.1| tRNA pseudouridine synthase A [Listeria monocytogenes 07PF0776]
gi|405753805|ref|YP_006677270.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC2378]
gi|406705333|ref|YP_006755687.1| tRNA pseudouridine synthase A [Listeria monocytogenes L312]
gi|417313813|ref|ZP_12100519.1| tRNA pseudouridine synthase A [Listeria monocytogenes J1816]
gi|424715408|ref|YP_007016123.1| tRNA pseudouridine synthase A [Listeria monocytogenes serotype 4b
str. LL195]
gi|51316671|sp|Q71WI0.1|TRUA_LISMF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|259550404|sp|C1KZ13.1|TRUA_LISMC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|46882043|gb|AAT05336.1| tRNA pseudouridine synthase A [Listeria monocytogenes serotype 4b
str. F2365]
gi|47018098|gb|EAL08870.1| tRNA pseudouridine synthase A [Listeria monocytogenes str. 4b
H7858]
gi|225877606|emb|CAS06320.1| Putative pseudouridylate synthase I [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|293594283|gb|EFG02044.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J1-194]
gi|328468084|gb|EGF39090.1| tRNA pseudouridine synthase A [Listeria monocytogenes J1816]
gi|384392041|gb|AFH81111.1| tRNA pseudouridine synthase A [Listeria monocytogenes 07PF0776]
gi|404223005|emb|CBY74368.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC2378]
gi|406362363|emb|CBY68636.1| tRNA pseudouridine synthase A [Listeria monocytogenes L312]
gi|424014592|emb|CCO65132.1| tRNA pseudouridine synthase A [Listeria monocytogenes serotype 4b
str. LL195]
Length = 248
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 142/253 (56%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG+ + G+Q Q + T+Q +EKAL ++ K + +R+ + RTDTGVHA G
Sbjct: 3 RYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHK--GKTVRITASGRTDTGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + E AL + P DI + +FHARF K Y Y +
Sbjct: 61 QVIHFDSELDITA-EKFQKALQVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRTK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ DPF R++A H Y+L+ + M+ A++ +G+HDF++F + R +R + V++++ D
Sbjct: 120 IFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSA-RTER-DSKVRTLYSIDFY 177
Query: 230 EM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E L + +G+GFLY VR + LL G+ I PD + + L +DR++L + +A
Sbjct: 178 EEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLI--SKTA 235
Query: 289 PPHGLCLVEVKYN 301
PP GL L V Y
Sbjct: 236 PPQGLYLWRVDYE 248
>gi|449947841|ref|ZP_21807663.1| tRNA pseudouridine synthase A [Streptococcus mutans 11SSST2]
gi|449999194|ref|ZP_21824364.1| tRNA pseudouridine synthase A [Streptococcus mutans N29]
gi|450028728|ref|ZP_21832351.1| tRNA pseudouridine synthase A [Streptococcus mutans G123]
gi|450098081|ref|ZP_21857802.1| tRNA pseudouridine synthase A [Streptococcus mutans SF1]
gi|450171486|ref|ZP_21884033.1| tRNA pseudouridine synthase A [Streptococcus mutans SM4]
gi|449168197|gb|EMB71030.1| tRNA pseudouridine synthase A [Streptococcus mutans 11SSST2]
gi|449187115|gb|EMB88912.1| tRNA pseudouridine synthase A [Streptococcus mutans N29]
gi|449195287|gb|EMB96617.1| tRNA pseudouridine synthase A [Streptococcus mutans G123]
gi|449221829|gb|EMC21581.1| tRNA pseudouridine synthase A [Streptococcus mutans SF1]
gi|449244031|gb|EMC42425.1| tRNA pseudouridine synthase A [Streptococcus mutans SM4]
Length = 249
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 142/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDGT ++G+Q Q T+Q +EK L+R+ + +++ GA RTD GVHA+G
Sbjct: 3 RYKAIISYDGTNFSGFQRQPQVRTVQEEIEKTLLRLN--SGQAVKVHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + L+ P DI V ++ +FHAR+ K Y + +
Sbjct: 61 QVIHFDLPQQRD-LEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHRKTYEFLVDLGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV- 228
+P RHYA H YK++ ++++ A + G HDF+ F + N V+++ R V
Sbjct: 120 PKNPLMRHYATHFPYKVDFSVVKAAIKKLRGTHDFTGF--TASGTSVENKVRTISRATVE 177
Query: 229 -IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ L GSGFLY+QVRNMV LL+IG +P D + +IL + DR LA +
Sbjct: 178 KDDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDR-SLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E+ Y++
Sbjct: 235 AASNGLYLKEIIYDD 249
>gi|450047043|ref|ZP_21839291.1| tRNA pseudouridine synthase A [Streptococcus mutans N34]
gi|450158933|ref|ZP_21879126.1| tRNA pseudouridine synthase A [Streptococcus mutans 66-2A]
gi|449198042|gb|EMB99174.1| tRNA pseudouridine synthase A [Streptococcus mutans N34]
gi|449241792|gb|EMC40410.1| tRNA pseudouridine synthase A [Streptococcus mutans 66-2A]
Length = 249
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 142/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDGT ++G+Q Q T+Q +EK L+R+ + +++ GA RTD GVHA+G
Sbjct: 3 RYKAIISYDGTNFSGFQRQPQMRTVQEEIEKTLLRLN--SGQAVKIHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + L+ P DI V ++ +FHAR+ K Y + +
Sbjct: 61 QVIHFDLPQQRD-LEKLRFGLDTQTPDDIDVIQVEQVADDFHARYHKHRKTYEFLVDLGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV- 228
+P RHYA H YK++ ++++ A + G HDF+ F + N V+++ R V
Sbjct: 120 PKNPLMRHYATHFPYKVDFSVVKAAIKKLRGTHDFTGF--TASGTSVENKVRTISRATVE 177
Query: 229 -IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ L GSGFLY+QVRNMV LL+IG +P D + +IL + DR LA +
Sbjct: 178 KDDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDR-SLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E+ Y++
Sbjct: 235 AASNGLYLKEIIYDD 249
>gi|254877028|ref|ZP_05249738.1| tRNA pseudouridine synthetase A [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254843049|gb|EET21463.1| tRNA pseudouridine synthetase A [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 258
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 142/251 (56%), Gaps = 15/251 (5%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I Y G Y GWQ Q+ P+IQ +EKAL +K+ +++ + A RTDTGVHA QV
Sbjct: 6 LQIEYFGKNYCGWQRQSHSPSIQEELEKAL---SKIANQNIEVTCAGRTDTGVHATSQVV 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F + + L S N LLP DI++ +I +F++RF+AK++ Y+Y IYN +
Sbjct: 63 NFHSDADRN-LSSWMRGTNALLPQDIKILDIKVVDNDFNSRFTAKNRTYNYIIYNSLISS 121
Query: 173 PFQRHYAYHSVY---KLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
P +A H ++ +LN M QA +Y +G+ DF++F + Q P +++ + + I
Sbjct: 122 PI---FAEHCLWENRQLNIDKMNQACKYLLGEQDFTSFRSSQCQSN--TPFRNIQKAEFI 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G+ + EV G+ FL+ +RN + LL++G E P+ + +L +DR K A +A
Sbjct: 177 KQGSFIVFEVVGNAFLHHMIRNFIGSLLKVGLEFESPEWIKLVLEAKDR---TKAAETAK 233
Query: 290 PHGLCLVEVKY 300
HGL V V+Y
Sbjct: 234 AHGLYFVGVEY 244
>gi|225377724|ref|ZP_03754945.1| hypothetical protein ROSEINA2194_03375 [Roseburia inulinivorans DSM
16841]
gi|225210401|gb|EEG92755.1| hypothetical protein ROSEINA2194_03375 [Roseburia inulinivorans DSM
16841]
Length = 245
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 141/252 (55%), Gaps = 12/252 (4%)
Query: 51 WRLVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I YDGTRY GWQ Q S TIQ +E L ++ + ++G+ RTD GVHA G
Sbjct: 4 YKITIQYDGTRYKGWQGQNSTGLTIQGKIEAVL---GQMAGHAVEVIGSGRTDAGVHAKG 60
Query: 110 QVAHF-ITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
QVA+F I +G I + LN LP DI V + FH+R++AK K Y Y I+
Sbjct: 61 QVANFHIEEHFTEG--KILSYLNHYLPDDIAVIAVEQVDERFHSRYAAKKKTYRYHIHMG 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
+ D F+R Y Y L+ M++AA Y +G HDF++F ++ + V++++ +
Sbjct: 119 EISDVFERKYEYQYEKTLDVERMKEAASYLIGTHDFTSFCGNKKMKK--TAVRTIYEINF 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ G L ++ G+GFL VR + L+++G P+ +P+IL +++R E A Y +A
Sbjct: 177 TKKGNDLWIDYRGNGFLQNMVRILTGTLIEVGDGRRAPEELPQILESKNR-ENAGY--TA 233
Query: 289 PPHGLCLVEVKY 300
P GL L+EV Y
Sbjct: 234 PACGLMLMEVHY 245
>gi|257899365|ref|ZP_05679018.1| tRNA pseudouridine synthase [Enterococcus faecium Com15]
gi|257837277|gb|EEV62351.1| tRNA pseudouridine synthase [Enterococcus faecium Com15]
Length = 248
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 141/254 (55%), Gaps = 10/254 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +IAYDGT + G+Q Q + T+Q VEK L R+ +++ + G+ RTD GVHA G
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQRMAN--GKEITVFGSGRTDAGVHAIG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P LE + AL+ P DI VR++ EFHAR+ K K Y +++
Sbjct: 61 QVIHFDYP-EERPLERMRFALDTQSPEDIAVRKVEIVSEEFHARYLVKEKTYQFRVDIGK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF--RFD 227
PF+RHYA + Y L+ +++A +G HDF++F + + V++++ + +
Sbjct: 120 PRSPFRRHYASYYPYPLDLGKIQRALPDLLGTHDFTSF--CASGSSIEDKVRTIYEAKME 177
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V E L G+GFLY+ +R +V LL+IG +P D +P I+A +DR +
Sbjct: 178 VNETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGP---T 234
Query: 288 APPHGLCLVEVKYN 301
A P GL L EVKY
Sbjct: 235 AHPEGLYLYEVKYE 248
>gi|168705501|ref|ZP_02737778.1| tRNA pseudouridine synthase A [Gemmata obscuriglobus UQM 2246]
Length = 263
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 97/258 (37%), Positives = 137/258 (53%), Gaps = 8/258 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+I YDGT + GWQ Q T+Q VEKA+ +T+ R +RL + RTD+GVHA GQV
Sbjct: 5 KLIIRYDGTDFFGWQTQPGRRTVQETVEKAIAEITREPR--VRLNCSGRTDSGVHAVGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+ T S + A+N LP D+ VRE++ A F A A K+Y Y + + +
Sbjct: 63 ANVYTA-SKLSCAVLLKAINAKLPEDVGVREVTEAPQSFCANKDAVRKMYRYVVQDGRLQ 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
DPF R YA+ LN M +A+ VG+HDF F N L V+++ V
Sbjct: 122 DPFLRKYAWFVRQHLNAEAMARASRCLVGRHDFRCFETEWPNR--LTSVRTITHLSVNRF 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G + ++VE +GFLY VR + L+Q+G+ P + +L DR+ LA +APP
Sbjct: 180 GECIWIDVEANGFLYNMVRAIAGSLVQVGRGFWPETQIADVLHAMDRR-LA--GPTAPPE 236
Query: 292 GLCLVEVKYNEEHLRLPA 309
GL L+ V Y E PA
Sbjct: 237 GLFLMRVTYPESGADRPA 254
>gi|450087981|ref|ZP_21854575.1| tRNA pseudouridine synthase A [Streptococcus mutans NV1996]
gi|450125679|ref|ZP_21867762.1| tRNA pseudouridine synthase A [Streptococcus mutans U2A]
gi|449217093|gb|EMC17168.1| tRNA pseudouridine synthase A [Streptococcus mutans NV1996]
gi|449232201|gb|EMC31327.1| tRNA pseudouridine synthase A [Streptococcus mutans U2A]
Length = 249
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 141/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDGT ++G+Q Q T+Q +EK L+R+ + +++ GA RTD GVHA+G
Sbjct: 3 RYKAIISYDGTNFSGFQRQPQMRTVQEEIEKTLLRLN--SGQAVKIHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + L+ P DI V ++ FHAR+ K Y + +
Sbjct: 61 QVIHFDLPQQRD-LEKLRFGLDTQTPDDIDVIQVEQVADNFHARYQKHRKTYEFLVDLGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV- 228
+P RHYA H YK++ ++++ A + G HDF+ F + N V+++ R V
Sbjct: 120 PKNPLMRHYATHFPYKVDFSVVKAAIKKLRGTHDFTGF--TASGTSVENKVRTISRATVE 177
Query: 229 -IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ L GSGFLY+QVRNMV LL+IG +P D + +IL + DR LA +
Sbjct: 178 KDDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDR-SLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E+ Y++
Sbjct: 235 AASNGLYLKEIIYDD 249
>gi|15896350|ref|NP_349699.1| tRNA pseudouridine synthase A [Clostridium acetobutylicum ATCC 824]
gi|337738306|ref|YP_004637753.1| tRNA pseudouridine synthase A [Clostridium acetobutylicum DSM 1731]
gi|384459817|ref|YP_005672237.1| tRNA pseudouridine synthase A [Clostridium acetobutylicum EA 2018]
gi|30913407|sp|Q97EL1.1|TRUA_CLOAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|15026164|gb|AAK81039.1|AE007806_12 Pseudouridylate synthase, TRUA [Clostridium acetobutylicum ATCC
824]
gi|325510506|gb|ADZ22142.1| tRNA pseudouridine synthase A [Clostridium acetobutylicum EA 2018]
gi|336292202|gb|AEI33336.1| tRNA pseudouridine synthase A [Clostridium acetobutylicum DSM 1731]
Length = 244
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 136/250 (54%), Gaps = 11/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L + YDGT Y GWQ Q + T+Q VEK + +T E + ++G SRTD+GVHA
Sbjct: 5 KLTLEYDGTNYCGWQKQKNVVTVQEEVEKIIGEITG---EKIDVIGCSRTDSGVHAKAYT 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVP-EFHARFSAKSKIYHYKIYNDAV 170
+F T + E + LN +LP DI V S VP +FH+RF K K Y Y I N
Sbjct: 62 CNFKTN-TVIPPEKFYLVLNSVLPDDI-VALNSEEVPMDFHSRFDNKGKTYSYTILNRLQ 119
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
R+Y Y +KLN LMR+A +Y +G HDF++F + ++ + +++++ ++E
Sbjct: 120 RAAIDRNYVYQYGHKLNCDLMREATKYILGTHDFTSFKST--GSKVKSNIRTIYEARIVE 177
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+ V G GFLY VR +V LL++G+E I P V I+ ++DR K P
Sbjct: 178 DENKVIFYVTGDGFLYNMVRIIVGTLLEVGEEKITPLNVKTIVESKDR---TKAGRVVPA 234
Query: 291 HGLCLVEVKY 300
GLCL +V Y
Sbjct: 235 KGLCLEKVMY 244
>gi|291520511|emb|CBK75732.1| pseudouridylate synthase I [Butyrivibrio fibrisolvens 16/4]
Length = 245
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 146/250 (58%), Gaps = 9/250 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
+V+AYDG+ Y+GWQ Q + TI+ + +AL T L +E + ++GASRTD GVH+ G VA
Sbjct: 5 IVVAYDGSNYSGWQIQPNGVTIEQKLNEAL---TDLLQEPISIMGASRTDAGVHSLGNVA 61
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
F T S + I ALN LP DI V+ +FH R++A K Y YKI N + D
Sbjct: 62 VFDTN-SRMPADKISFALNQRLPDDIVVQYSCQVEDDFHPRYAACRKTYEYKILNRKMPD 120
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P +R +H Y L+ M +AA Y +G+HDF++F +V+ ++ + V++++ V +
Sbjct: 121 PTKRKDTFHYYYDLDVEKMNEAAAYLIGQHDFTSFSSVKA--QVKSRVRTIYTAKVYKED 178
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
++ + + G GFLY VR + L+++G + P + +I ++R ELA +AP HG
Sbjct: 179 DVIHIRLTGDGFLYNMVRIIAGTLIKVGAGEMEPMYMLEIFRGRNR-ELA--GPTAPAHG 235
Query: 293 LCLVEVKYNE 302
L ++ ++Y E
Sbjct: 236 LTMIGIEYEE 245
>gi|56961964|ref|YP_173686.1| pseudouridylate synthase [Bacillus clausii KSM-K16]
gi|62901228|sp|Q5WLN0.1|TRUA_BACSK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|56908198|dbj|BAD62725.1| pseudouridylate synthase I [Bacillus clausii KSM-K16]
Length = 261
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 135/248 (54%), Gaps = 8/248 (3%)
Query: 55 IAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHF 114
++YDGT +AG+Q Q T+Q VE+AL + K R + +V + RTD GVHA GQV HF
Sbjct: 8 LSYDGTAFAGYQVQPGKRTVQSEVERALQEIHKGAR--VPVVASGRTDAGVHACGQVLHF 65
Query: 115 ITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPF 174
T + E +ALN LP DI V + P+FHAR+ A++K Y Y I + F
Sbjct: 66 DTELTI-APERWVSALNTHLPDDIVVTNAAMVEPDFHARYGAQAKEYRYYIQCGPFENVF 124
Query: 175 QRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGAL 234
+RH+A H L+ M+ AA++ +G HDFSAF N + + V+++ V
Sbjct: 125 RRHFAVHIKQALDVPAMQTAAKHLLGTHDFSAFCAA--NTTVTDKVRTITHVAVQPSEEG 182
Query: 235 LQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLC 294
L + + G+GFLY VR +V LL+IG + ILA + R K +AP HGLC
Sbjct: 183 LLISIRGTGFLYNMVRIIVGTLLEIGTGKRVASEMKVILAGKSRNLAGK---TAPAHGLC 239
Query: 295 LVEVKYNE 302
L EV Y +
Sbjct: 240 LYEVDYGQ 247
>gi|170289026|ref|YP_001739264.1| tRNA pseudouridine synthase ACD [Thermotoga sp. RQ2]
gi|403253470|ref|ZP_10919771.1| tRNA pseudouridine synthase ACD [Thermotoga sp. EMP]
gi|238688847|sp|B1LB83.1|TRUA_THESQ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|170176529|gb|ACB09581.1| tRNA pseudouridine synthase A [Thermotoga sp. RQ2]
gi|402811004|gb|EJX25492.1| tRNA pseudouridine synthase ACD [Thermotoga sp. EMP]
Length = 245
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 137/246 (55%), Gaps = 10/246 (4%)
Query: 54 VIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAH 113
VI YDG+ + G+Q Q T+Q ++E AL R+ K + + A RTD GVHA GQ+
Sbjct: 7 VIEYDGSNFFGYQGQPDVRTVQGVIEDALERIFK---QRIYTQAAGRTDAGVHANGQLIA 63
Query: 114 FITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDP 173
F P E I A+N LP D+ V+E+ FH RF K +IYHY I +
Sbjct: 64 FNCPNDRMTTEDIKNAMNANLPDDVYVKEVFEVSKNFHPRFDVKKRIYHYFILTSKQKNV 123
Query: 174 FQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM-G 232
F R Y + Y+L+ MR+AA+Y G HDF++F ++R +PV++++R ++ +
Sbjct: 124 FLRKYVWWFPYELDLDAMRKAAKYLEGTHDFTSF-KTGSDER--DPVRTIYRIRILRLKN 180
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
L+ + VEG FL R VRN+VA L+++G + P+ + ++L +DR A +AP HG
Sbjct: 181 DLVLIRVEGRSFLRRMVRNIVAALVKVGLKQWEPEKMKEVLEARDRSAAAG---TAPAHG 237
Query: 293 LCLVEV 298
L +V
Sbjct: 238 LYFYKV 243
>gi|306829107|ref|ZP_07462297.1| tRNA pseudouridine synthase A [Streptococcus mitis ATCC 6249]
gi|304428193|gb|EFM31283.1| tRNA pseudouridine synthase A [Streptococcus mitis ATCC 6249]
Length = 249
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 140/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SKIY + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVILIEIVADDFHCRYAKHSKIYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFR--FD 227
+P +RHYA H Y L+ M+ A + G HDF+ F + N V+++
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGF--TASGTSVENKVRTITEASLT 177
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V E G L G+GFLY+Q+RNMV LL+IG + + + IL +DR +LA +
Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMLVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|16804636|ref|NP_466121.1| tRNA pseudouridine synthase A [Listeria monocytogenes EGD-e]
gi|254829047|ref|ZP_05233734.1| truA [Listeria monocytogenes FSL N3-165]
gi|254912843|ref|ZP_05262855.1| tRNA pseudouridine synthase A [Listeria monocytogenes J2818]
gi|254937223|ref|ZP_05268920.1| truA [Listeria monocytogenes F6900]
gi|255029029|ref|ZP_05300980.1| tRNA pseudouridine synthase A [Listeria monocytogenes LO28]
gi|284800516|ref|YP_003412381.1| tRNA pseudouridine synthase A [Listeria monocytogenes 08-5578]
gi|284993702|ref|YP_003415470.1| tRNA pseudouridine synthase A [Listeria monocytogenes 08-5923]
gi|386044906|ref|YP_005963711.1| tRNA pseudouridine synthase A [Listeria monocytogenes 10403S]
gi|386048328|ref|YP_005966660.1| tRNA pseudouridine synthase A [Listeria monocytogenes J0161]
gi|386051570|ref|YP_005969561.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL R2-561]
gi|386054788|ref|YP_005972346.1| tRNA pseudouridine synthase A [Listeria monocytogenes Finland 1998]
gi|404285094|ref|YP_006685991.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC2372]
gi|404411848|ref|YP_006697436.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC5850]
gi|404414674|ref|YP_006700261.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC7179]
gi|405759651|ref|YP_006688927.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC2479]
gi|24212550|sp|Q8Y457.1|TRUA_LISMO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|16412086|emb|CAD00676.1| truA [Listeria monocytogenes EGD-e]
gi|258601456|gb|EEW14781.1| truA [Listeria monocytogenes FSL N3-165]
gi|258609828|gb|EEW22436.1| truA [Listeria monocytogenes F6900]
gi|284056078|gb|ADB67019.1| tRNA pseudouridine synthase A [Listeria monocytogenes 08-5578]
gi|284059169|gb|ADB70108.1| tRNA pseudouridine synthase A [Listeria monocytogenes 08-5923]
gi|293590841|gb|EFF99175.1| tRNA pseudouridine synthase A [Listeria monocytogenes J2818]
gi|345535319|gb|AEO04760.1| tRNA pseudouridine synthase A [Listeria monocytogenes J0161]
gi|345538140|gb|AEO07580.1| tRNA pseudouridine synthase A [Listeria monocytogenes 10403S]
gi|346425416|gb|AEO26941.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL R2-561]
gi|346647439|gb|AEO40064.1| tRNA pseudouridine synthase A [Listeria monocytogenes Finland 1998]
gi|404231674|emb|CBY53078.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC5850]
gi|404234596|emb|CBY55999.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC2372]
gi|404237533|emb|CBY58935.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC2479]
gi|404240373|emb|CBY61774.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC7179]
Length = 248
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 142/253 (56%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG+ + G+Q Q + T+Q +EKAL ++ K + +R+ + RTDTGVHA G
Sbjct: 3 RYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHK--GKTVRVTASGRTDTGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + E AL + P DI + +FHARF K Y Y +
Sbjct: 61 QVIHFDSELDITA-EKFQKALQVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRTK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ DPF R++A H Y+L+ + M+ A++ +G+HDF++F + R +R + V++++ D
Sbjct: 120 IFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSA-RTER-DSKVRTLYSIDFY 177
Query: 230 EM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E L + +G+GFLY VR + LL G+ I PD + + L +DR++L + +A
Sbjct: 178 EEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLI--SKTA 235
Query: 289 PPHGLCLVEVKYN 301
PP GL L V Y
Sbjct: 236 PPQGLYLWRVDYE 248
>gi|150015077|ref|YP_001307331.1| tRNA pseudouridine synthase A [Clostridium beijerinckii NCIMB 8052]
gi|189030131|sp|A6LPU5.1|TRUA_CLOB8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|149901542|gb|ABR32375.1| tRNA pseudouridine synthase A [Clostridium beijerinckii NCIMB 8052]
Length = 244
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 136/249 (54%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+I +DG+ + GWQ Q TIQ ++E A+ + T E++ + G+SRTD GVHA V
Sbjct: 5 KLIIEFDGSNFCGWQRQPKGRTIQKVIETAIFKATG---EEIMINGSSRTDAGVHAREMV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F+T S G + A+N LP D+ + + +FHAR+S+K K Y Y I N
Sbjct: 62 ANFLTNSSIPG-DKFREAINTRLPEDVSIIKSEEVSEDFHARYSSKGKTYSYTIINRYER 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
Y YH Y+L+ MR+A EYF+G+HDF AF++ + +++ + +
Sbjct: 121 LSLGHQYLYHYKYRLDVNEMRRACEYFIGRHDFRAFMSP--GSSIKTTTRTIHDLYIDQN 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G +++ + GFLY VR +V L++IG + + + I+ +RK K + PP+
Sbjct: 179 GNEIKIFITADGFLYNMVRIIVGTLIKIGNGKLEVENIKDIIEEGNRK---KAGMCVPPN 235
Query: 292 GLCLVEVKY 300
GL L +V Y
Sbjct: 236 GLILEKVFY 244
>gi|449937089|ref|ZP_21804356.1| tRNA pseudouridine synthase A [Streptococcus mutans 2ST1]
gi|450155340|ref|ZP_21878189.1| tRNA pseudouridine synthase A [Streptococcus mutans 21]
gi|449164772|gb|EMB67813.1| tRNA pseudouridine synthase A [Streptococcus mutans 2ST1]
gi|449237217|gb|EMC36088.1| tRNA pseudouridine synthase A [Streptococcus mutans 21]
Length = 249
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 142/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDGT ++G+Q Q T+Q +EK L+R+ + +++ GA RTD GVHA+G
Sbjct: 3 RYKAIISYDGTNFSGFQRQPQVRTVQEEIEKTLLRLN--SGQAVKVHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + L+ P DI V ++ +FHAR+ K Y + +
Sbjct: 61 QVIHFDLPQQRD-LEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHRKTYEFLVDLGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV- 228
+P RHYA H YK++ ++++ A + G HDF+ F + N V+++ R V
Sbjct: 120 PKNPLMRHYATHFPYKVDFSVVKAAIKKLRGTHDFTGF--TASGTSVENKVRTISRATVE 177
Query: 229 -IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ L GSGFLY+QVRNM+ LL+IG +P D + +IL + DR LA +
Sbjct: 178 KDDKTGFLIFTFTGSGFLYKQVRNMIGTLLKIGNGRMPIDQIDRILESGDR-SLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E+ Y++
Sbjct: 235 AASNGLYLKEIIYDD 249
>gi|344996365|ref|YP_004798708.1| tRNA pseudouridine synthase A [Caldicellulosiruptor lactoaceticus
6A]
gi|343964584|gb|AEM73731.1| tRNA pseudouridine synthase A [Caldicellulosiruptor lactoaceticus
6A]
Length = 244
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 136/248 (54%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I YDGT Y GWQ Q + TIQ +E+A + KL E++ L+G+ RTD GVHA Q A
Sbjct: 6 LTIEYDGTGYFGWQKQPNKKTIQGTIEEA---IKKLTGEEVNLIGSGRTDRGVHALNQKA 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T S + ALN +LP DI V++ +F AR+SAK K Y Y IYN
Sbjct: 63 NFKTN-SKIPTDKFPLALNSVLPGDISVKDAVEVPLDFSARYSAKQKTYKYLIYNKKSRP 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
R+YAY+ Y+L+ M++A EYF+G++DF +F + + ++ V+ +
Sbjct: 122 ALLRNYAYYYPYELDVDAMQRACEYFIGEYDFKSFCSADSEAK--TTIRRVYNAYLTFEN 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ + + +GFLY R + +L +G + P +P ++ ++DR + K + PP G
Sbjct: 180 ECIAIYITANGFLYNMARIIAGTILDVGAGKLKPMDIPLVIESKDRTKAGK---TLPPWG 236
Query: 293 LCLVEVKY 300
L LV+V Y
Sbjct: 237 LYLVDVVY 244
>gi|431545045|ref|ZP_19518686.1| tRNA pseudouridine synthase A [Enterococcus faecium E1731]
gi|430592093|gb|ELB30115.1| tRNA pseudouridine synthase A [Enterococcus faecium E1731]
Length = 248
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 142/254 (55%), Gaps = 10/254 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +IAYDGT + G+Q Q + T+Q VEK L ++T +++ + G+ RTD GVHA G
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMTN--GKEITVFGSGRTDAGVHAIG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P LE + AL+ P DI VR++ +FHAR+ K K Y +++
Sbjct: 61 QVIHFDYP-EERPLERMRFALDTQSPEDIAVRQVEIVSEDFHARYLVKEKTYQFRVDIGK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF--RFD 227
PF+RHYA + Y L+ +++A +G HDF++F + + +++++ + +
Sbjct: 120 PRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSF--CASGSSIEDKIRTIYEAKME 177
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V E L G+GFLY+ +R +V LL+IG +P D +P I+A +DR +
Sbjct: 178 VNETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGP---T 234
Query: 288 APPHGLCLVEVKYN 301
A P GL L EVKY
Sbjct: 235 AHPEGLYLYEVKYE 248
>gi|322377359|ref|ZP_08051850.1| tRNA pseudouridine synthase A [Streptococcus sp. M334]
gi|321281559|gb|EFX58568.1| tRNA pseudouridine synthase A [Streptococcus sp. M334]
Length = 249
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 138/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVLHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P R+YA H Y L+ M+ A + G HDF+ F D++ ++ + D
Sbjct: 120 PKNPMSRYYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLKVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|384086462|ref|ZP_09997637.1| tRNA pseudouridine synthase A [Acidithiobacillus thiooxidans ATCC
19377]
Length = 275
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 136/263 (51%), Gaps = 13/263 (4%)
Query: 43 DDSFPGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTD 102
D PG +W L + YDG + GWQ Q ++Q +E+AL ++L + + A RTD
Sbjct: 8 DTPRPGIRWALGVEYDGNGFCGWQRQLGQASVQQSLEEAL---SRLAGTAIPVTVAGRTD 64
Query: 103 TGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYH 162
TGVHA QV HF P ES A N LP + VR FHARFSA ++ Y
Sbjct: 65 TGVHALCQVVHFDAPVQRSA-ESWLRATNTYLPDGVAVRWAQPVSAHFHARFSATARRYR 123
Query: 163 YKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAF--VNVQRNDRLLNPV 220
Y I N RH+ L M+ AA+ +G HDFSAF + Q N +PV
Sbjct: 124 YVILNRREKSALWRHHTAWVYSPLAIEPMQVAADLLLGTHDFSAFRASSCQAN----SPV 179
Query: 221 KSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKE 280
+S+ R V + G L+ ++ E +GFL+ VRN+ +L+ IG+ P ++LA++DR
Sbjct: 180 RSLHRLTVSQRGDLISIDAEANGFLHHMVRNLAGVLIAIGRGDQSPQWAAEVLASRDR-- 237
Query: 281 LAKYALSAPPHGLCLVEVKYNEE 303
+ ++APP GL V +Y +E
Sbjct: 238 -CQAGVTAPPGGLYFVAPRYPDE 259
>gi|421487869|ref|ZP_15935267.1| tRNA pseudouridine(38-40) synthase [Streptococcus oralis SK304]
gi|400369831|gb|EJP22828.1| tRNA pseudouridine(38-40) synthase [Streptococcus oralis SK304]
Length = 249
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 137/255 (53%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GHAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIEIVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+ +RHYA H Y L+ M+ A + G HDF+ F D++ ++ D
Sbjct: 120 PKNTMRRHYATHFPYPLDVERMQMAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLTVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|421227783|ref|ZP_15684485.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2072047]
gi|395594067|gb|EJG54307.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 2072047]
Length = 249
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG + G+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFDGFQRQPHARSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFTVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P +RHYA H Y L+ M+ A + G HDF+ F + + V+++ +I
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGF--TASGTSVEDKVRTITEASLI 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|218781331|ref|YP_002432649.1| tRNA pseudouridine synthase A [Desulfatibacillum alkenivorans
AK-01]
gi|218762715|gb|ACL05181.1| tRNA pseudouridine synthase A [Desulfatibacillum alkenivorans
AK-01]
Length = 245
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 99/250 (39%), Positives = 135/250 (54%), Gaps = 9/250 (3%)
Query: 51 WRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
++L++ YDGT Y GWQ Q TIQ ++E AL ++T R+ + GA RTD+GVHA
Sbjct: 5 FKLILEYDGTHYHGWQRQPHDLTIQEVLEGALEKIT---RQKCVVYGAGRTDSGVHALNY 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F D + ALN LP DI +E + A FHAR SA SKIY Y I N
Sbjct: 62 VANFRCNTHLDAGVFV-KALNSTLPKDIVCKESTLAPDGFHARKSAVSKIYEYHITNGPT 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
R YA+H +L+ M +AA+ F+G HDFSAF V+++ + +
Sbjct: 121 PPAVCRQYAWHVRRRLDKEAMTRAAKLFLGSHDFSAFEGA--GSPKATSVRNIMQSHIQS 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+ VE +GFL VRN+V L+ IG IPP+ V ILA+ DR + +APP
Sbjct: 179 WENHIIYRVEANGFLRYMVRNIVGTLVYIGMGKIPPEAVMDILASGDRGQAGP---TAPP 235
Query: 291 HGLCLVEVKY 300
GL ++ VKY
Sbjct: 236 EGLFMMCVKY 245
>gi|450011399|ref|ZP_21829163.1| tRNA pseudouridine synthase A [Streptococcus mutans A19]
gi|450023443|ref|ZP_21830615.1| tRNA pseudouridine synthase A [Streptococcus mutans U138]
gi|449189576|gb|EMB91228.1| tRNA pseudouridine synthase A [Streptococcus mutans A19]
gi|449193349|gb|EMB94734.1| tRNA pseudouridine synthase A [Streptococcus mutans U138]
Length = 249
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 142/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDGT ++G+Q Q T+Q +EK L+R+ + +++ GA RTD GVHA+G
Sbjct: 3 RYKAIISYDGTNFSGFQRQPQVRTVQEEIEKTLLRLN--SGQAVKIHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + L+ P DI V ++ +FHAR+ K Y + +
Sbjct: 61 QVIHFDLPPQRD-LEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHRKTYEFLVDLGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV- 228
+P RHYA H YK++ ++++ A + G HDF+ F + N V+++ R V
Sbjct: 120 PKNPLMRHYATHFPYKVDFSVVKAAIKKLRGTHDFTGF--TASGTSVENKVRTISRATVE 177
Query: 229 -IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ L GSGFLY+QVRNMV LL+IG +P D + +IL + DR LA +
Sbjct: 178 KDDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDR-SLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E+ Y++
Sbjct: 235 AASNGLYLKEIIYDD 249
>gi|383786162|ref|YP_005470731.1| pseudouridylate synthase I [Fervidobacterium pennivorans DSM 9078]
gi|383109009|gb|AFG34612.1| pseudouridylate synthase I [Fervidobacterium pennivorans DSM 9078]
Length = 246
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 140/244 (57%), Gaps = 9/244 (3%)
Query: 56 AYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFI 115
AYDGT + G+Q QT T+Q +EKAL R+ K+ ++ A RTDTGVHA GQVA F
Sbjct: 9 AYDGTDFFGYQRQTDVRTVQEDLEKALERIFKVP---IQTYAAGRTDTGVHANGQVAAFD 65
Query: 116 TPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQ 175
P I ALN LP DI V+++ A F+ R+ AK +IYHY I N + D F
Sbjct: 66 CPNDKLTENDIRNALNANLPKDIYVKKVWFASENFNPRYEAKRRIYHYYILNSKMNDIFL 125
Query: 176 RHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGA-L 234
R YA+ Y+L+ MR AEY +G HDF+AF D + +++ ++++ L
Sbjct: 126 RRYAWWFPYELDIARMRAGAEYLIGTHDFTAFSKKGEED--IRTERTITAIRIVKLKKNL 183
Query: 235 LQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLC 294
+ + VEG +L VR++VA L+++G + P+ + ++L ++DR +K A AP HGL
Sbjct: 184 ILVRVEGISYLRGMVRSIVANLVKVGVGSWGPEKILEVLESKDR---SKSAGLAPAHGLF 240
Query: 295 LVEV 298
L +V
Sbjct: 241 LYKV 244
>gi|126667385|ref|ZP_01738357.1| tRNA pseudouridine synthase A [Marinobacter sp. ELB17]
gi|126628141|gb|EAZ98766.1| tRNA pseudouridine synthase A [Marinobacter sp. ELB17]
Length = 303
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 134/251 (53%), Gaps = 8/251 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
LV YDG + GWQ Q S I+ + ++ +K+ D+ LV A RTD GVHA Q+
Sbjct: 21 LVFEYDGREFHGWQQQKS--GIRAVQQQLAKAASKVADHDVELVCAGRTDAGVHASYQLV 78
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
HF TP S + S +N LP DI VR +FHARFSA + Y Y IYN+ V
Sbjct: 79 HFDTP-SLRTMRSWVMGINTALPFDISVRWAGQCQGDFHARFSAVYRRYRYIIYNNPVRP 137
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
QR + LN M QAA+ VG+HDFSAF +P++ + V G
Sbjct: 138 GIQRGQVSWNFRPLNAENMHQAAQALVGEHDFSAFRAAGCQSH--SPIRFLQSISVTRKG 195
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
L ++V+ + FL+ VRN+ L+ +G + PD + +ILAT+DR++ ++APP G
Sbjct: 196 DYLVIDVQANAFLHHMVRNIAGALMAVGCQEQAPDWIGQILATKDRRQA---GVTAPPDG 252
Query: 293 LCLVEVKYNEE 303
L LV+V Y E
Sbjct: 253 LYLVDVGYPAE 263
>gi|425054937|ref|ZP_18458438.1| tRNA pseudouridine synthase A [Enterococcus faecium 505]
gi|403035071|gb|EJY46479.1| tRNA pseudouridine synthase A [Enterococcus faecium 505]
Length = 248
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 141/254 (55%), Gaps = 10/254 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +IAYDGT + G+Q Q + T+Q VEK L ++ +++ + G+ RTD GVHA G
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMAN--GKEITVFGSGRTDAGVHAIG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P LE + AL+ P DI VR++ EFHAR+ K K Y +++
Sbjct: 61 QVIHFDYP-EERPLERMRFALDTQSPEDIAVRQVEIVSEEFHARYLVKEKTYQFRVDIGK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF--RFD 227
PF+RHYA + Y L+ +++A +G HDF++F + + V++++ + +
Sbjct: 120 PRSPFRRHYASYYPYPLDLEKIQRALPDLLGTHDFTSF--CASGSSIEDKVRTIYEAKME 177
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V E L G+GFLY+ +R +V LL+IG +P D +P I+A +DR +
Sbjct: 178 VNETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGP---T 234
Query: 288 APPHGLCLVEVKYN 301
A P GL L EVKY
Sbjct: 235 AHPEGLYLYEVKYE 248
>gi|424763809|ref|ZP_18191274.1| tRNA pseudouridine synthase A [Enterococcus faecium TX1337RF]
gi|402421985|gb|EJV54228.1| tRNA pseudouridine synthase A [Enterococcus faecium TX1337RF]
Length = 248
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 141/253 (55%), Gaps = 10/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +IAYDGT + G+Q Q + T+Q VEK L ++ +++ + G+ RTD GVHA G
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMAN--GKEITVFGSGRTDAGVHAIG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P LE + AL+ P DI VR++ EFHAR+ K K Y +++
Sbjct: 61 QVIHFDYP-EERPLERMRFALDTQSPEDIAVRQVEIVSEEFHARYLVKEKTYQFRVDIGK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF--RFD 227
PF+RHYA + Y L+ +++A +G HDF++F + + V++++ + +
Sbjct: 120 PRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSF--CASGSSIEDKVRTIYEAKME 177
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V E L G+GFLY+ +R +V LL+IG +P D +P I+A +DR +
Sbjct: 178 VNETKNELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGP---T 234
Query: 288 APPHGLCLVEVKY 300
A P GL L EVKY
Sbjct: 235 AHPEGLYLYEVKY 247
>gi|347751562|ref|YP_004859127.1| tRNA pseudouridine synthase A [Bacillus coagulans 36D1]
gi|347584080|gb|AEP00347.1| tRNA pseudouridine synthase A [Bacillus coagulans 36D1]
Length = 245
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 136/249 (54%), Gaps = 8/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ ++YDG+R+AG+Q Q T+Q +EKAL + K ++ + RTD GVHA GQV
Sbjct: 5 KCTVSYDGSRFAGYQVQPGQRTVQQEIEKALATLHK--GRHVKTAASGRTDAGVHAMGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF T S S AALN LLP DI V + + A P FHAR+S K K Y Y+IY V
Sbjct: 63 IHFDTDLSIPET-SWPAALNSLLPGDISVSKAAYADPAFHARYSVKEKEYRYRIYFSHVR 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
PF+ YA Y L+ M AAE +G HDF++F + + + + ++++ ++
Sbjct: 122 SPFKHRYALRVWYSLDIEAMEAAAETVLGTHDFTSFCSAKTE--VEDKIRTLKEIRFLQQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L + +G+GFLY VR + LL+IG P + +IL ++R K +APP
Sbjct: 180 DDELVICFKGNGFLYNMVRILTGTLLEIGSGKRDPGEMREILEKRNRIYAGK---TAPPE 236
Query: 292 GLCLVEVKY 300
GL L +V Y
Sbjct: 237 GLYLWKVSY 245
>gi|157374791|ref|YP_001473391.1| tRNA pseudouridine synthase A [Shewanella sediminis HAW-EB3]
gi|189030145|sp|A8FTU0.1|TRUA_SHESH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|157317165|gb|ABV36263.1| tRNA-pseudouridine synthase I [Shewanella sediminis HAW-EB3]
Length = 261
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 140/253 (55%), Gaps = 11/253 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I YDG +Y GWQ Q ++Q +E+AL +K+ E +R+ A RTD GVHA GQV
Sbjct: 5 LGIEYDGRQYFGWQRQAEVDSVQAQLERAL---SKVANEPIRVHCAGRTDAGVHATGQVV 61
Query: 113 HFIT-PFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF T D ++ +N LP DI VR + EFHARFSA ++ Y Y IYN
Sbjct: 62 HFETNAIRKDSAWTLGVNVN--LPDDIAVRWVKIVDDEFHARFSATARRYRYMIYNYDFR 119
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
R H ++ +M QAA+ FVG+HDF++F + + P +SV +V
Sbjct: 120 PGILRSGVSHYRGNIDADIMHQAAQQFVGEHDFTSFRALHCQSK--TPFRSVHEVNVTRQ 177
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G + ++++ + FL+ VRN+V LL+IG P+ +P++L +DR + A +A P+
Sbjct: 178 GMYICVDIKANAFLHHMVRNIVGTLLEIGLGNQRPEWIPQLLDLKDRSQAAP---TAKPN 234
Query: 292 GLCLVEVKYNEEH 304
GL +V+V Y E +
Sbjct: 235 GLYMVDVTYPERY 247
>gi|372268713|ref|ZP_09504761.1| tRNA pseudouridine synthase A [Alteromonas sp. S89]
Length = 294
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 149/275 (54%), Gaps = 13/275 (4%)
Query: 41 PTDDSFPGFKWRLV--IAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLEREDLRLVG 97
P +S P R+ + Y GTR G+Q Q P T+Q +EKAL +K+ E + LV
Sbjct: 15 PPGESLPEGLHRIALGVEYCGTRLRGFQKQKHDPLTVQETLEKAL---SKVAAEPVTLVC 71
Query: 98 ASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAK 157
A RTD GVHA QV HF T + L++ +N +P D+RV +FHARFSA+
Sbjct: 72 AGRTDAGVHASSQVVHFDT-TAQRPLKAWVQGVNTQMPFDVRVHWAQPVPAQFHARFSAR 130
Query: 158 SKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLL 217
S+ Y Y I++ + L+ MR+ A + VG+HDFS+F Q R
Sbjct: 131 SRSYRYLIHSAPTRSAQAASEVTWTERTLDLEAMREGARHLVGEHDFSSFRAAQCQAR-- 188
Query: 218 NPVKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQD 277
+PV+ + R D+ +G L+ LEV + FL+ VRN+ +L+ +G+ P+ V ++L +D
Sbjct: 189 SPVRRLTRLDIGRVGQLIVLEVSATAFLHHMVRNIAGVLMAVGRGDRSPEWVRQVLEARD 248
Query: 278 RKELAKYALSAPPHGLCLVEVKYNEEHLRLPAACP 312
R +++APPHGL LV+V+Y EE LP P
Sbjct: 249 R---TAASVTAPPHGLYLVDVQYPEE-FTLPEVAP 279
>gi|293374636|ref|ZP_06620951.1| tRNA pseudouridine synthase A [Turicibacter sanguinis PC909]
gi|325845439|ref|ZP_08168732.1| tRNA pseudouridine synthase A [Turicibacter sp. HGF1]
gi|292646726|gb|EFF64721.1| tRNA pseudouridine synthase A [Turicibacter sanguinis PC909]
gi|325488545|gb|EGC90961.1| tRNA pseudouridine synthase A [Turicibacter sp. HGF1]
Length = 258
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 152/267 (56%), Gaps = 16/267 (5%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ + +AYDGT + G+Q Q T+Q +E AL +++K + + + + RTDTGVHA+G
Sbjct: 3 RIKCTVAYDGTLFNGYQRQPGQRTVQGEIEAALEKISK---QPVTIHSSGRTDTGVHAYG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + + DG + ALN +LP DI + + PEFH+R+ K K Y Y++ +
Sbjct: 60 QVFHFDSVVNMDGSRYVR-ALNSILPEDIYIIDSQEVHPEFHSRYHGKVKEYRYRLSLNE 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P +R+Y Y+ + L+ MR+A Y +G H+F++F N ++ V+++++ D+I
Sbjct: 119 -YNPMKRNYVYYHRFSLDVEKMREAMTYLLGTHNFTSFCG---NLDDIDKVRTIYQADLI 174
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ L G+GFL +R MV L+QIG+ P+ + I+ ++RK LA + +A
Sbjct: 175 DEDGELTFIFVGNGFLRYMIRIMVGTLIQIGEGKKKPEDIKTIIEAKNRK-LAGH--TAK 231
Query: 290 PHGLCLVEVKYNEEHLRLPAACPLSSF 316
P GL L V Y EE L+ PL+ +
Sbjct: 232 PQGLYLQRVDYPEEMLK-----PLTDY 253
>gi|227550751|ref|ZP_03980800.1| tRNA-pseudouridine synthase I [Enterococcus faecium TX1330]
gi|257887991|ref|ZP_05667644.1| tRNA pseudouridine synthase [Enterococcus faecium 1,141,733]
gi|257893205|ref|ZP_05672858.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,408]
gi|257896390|ref|ZP_05676043.1| tRNA pseudouridine synthase [Enterococcus faecium Com12]
gi|293379476|ref|ZP_06625620.1| tRNA pseudouridine synthase A [Enterococcus faecium PC4.1]
gi|293570714|ref|ZP_06681764.1| tRNA pseudouridine synthase A [Enterococcus faecium E980]
gi|431036445|ref|ZP_19492215.1| tRNA pseudouridine synthase A [Enterococcus faecium E1590]
gi|431739039|ref|ZP_19527979.1| tRNA pseudouridine synthase A [Enterococcus faecium E1972]
gi|431740680|ref|ZP_19529591.1| tRNA pseudouridine synthase A [Enterococcus faecium E2039]
gi|431753086|ref|ZP_19541763.1| tRNA pseudouridine synthase A [Enterococcus faecium E2620]
gi|431757912|ref|ZP_19546541.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E3083]
gi|431763178|ref|ZP_19551731.1| tRNA pseudouridine synthase A [Enterococcus faecium E3548]
gi|227180069|gb|EEI61041.1| tRNA-pseudouridine synthase I [Enterococcus faecium TX1330]
gi|257824045|gb|EEV50977.1| tRNA pseudouridine synthase [Enterococcus faecium 1,141,733]
gi|257829584|gb|EEV56191.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,408]
gi|257832955|gb|EEV59376.1| tRNA pseudouridine synthase [Enterococcus faecium Com12]
gi|291609186|gb|EFF38458.1| tRNA pseudouridine synthase A [Enterococcus faecium E980]
gi|292641999|gb|EFF60165.1| tRNA pseudouridine synthase A [Enterococcus faecium PC4.1]
gi|430562985|gb|ELB02216.1| tRNA pseudouridine synthase A [Enterococcus faecium E1590]
gi|430596582|gb|ELB34406.1| tRNA pseudouridine synthase A [Enterococcus faecium E1972]
gi|430602763|gb|ELB40313.1| tRNA pseudouridine synthase A [Enterococcus faecium E2039]
gi|430612591|gb|ELB49626.1| tRNA pseudouridine synthase A [Enterococcus faecium E2620]
gi|430618417|gb|ELB55264.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E3083]
gi|430622872|gb|ELB59582.1| tRNA pseudouridine synthase A [Enterococcus faecium E3548]
Length = 248
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 141/254 (55%), Gaps = 10/254 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +IAYDGT + G+Q Q + T+Q VEK L ++ +++ + G+ RTD GVHA G
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMAN--GKEITVFGSGRTDAGVHAIG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P LE + AL+ P DI VR++ EFHAR+ K K Y +++
Sbjct: 61 QVIHFDYP-EERPLERMRFALDTQSPEDIAVRQVEIVSEEFHARYLVKEKTYQFRVDIGK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF--RFD 227
PF+RHYA + Y L+ +++A +G HDF++F + + V++++ + +
Sbjct: 120 PRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSF--CASGSSIEDKVRTIYEAKME 177
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V E L G+GFLY+ +R +V LL+IG +P D +P I+A +DR +
Sbjct: 178 VNETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGP---T 234
Query: 288 APPHGLCLVEVKYN 301
A P GL L EVKY
Sbjct: 235 AHPEGLYLYEVKYE 248
>gi|188590732|ref|YP_001919706.1| tRNA pseudouridine synthase A [Clostridium botulinum E3 str. Alaska
E43]
gi|238689635|sp|B2UYE4.1|TRUA_CLOBA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|188501013|gb|ACD54149.1| tRNA pseudouridine synthase A [Clostridium botulinum E3 str. Alaska
E43]
Length = 244
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 134/249 (53%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+I +DGT + GWQ Q T+Q +E A++++T E G+SRTD GVHA V
Sbjct: 5 KLIIEFDGTNFCGWQRQVKDRTVQGCLENAILKITG---EKSLTNGSSRTDGGVHAKAMV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+FIT S G E ALN LP DI + + EFHAR+S+K K+Y Y I N
Sbjct: 62 ANFITNSSIPG-EKFREALNTKLPDDISIIKSEEVDMEFHARYSSKGKMYSYTIVNRYEK 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
F + Y +H +LN M++A EYF+GKHDF AF++ + + V+++ F + E
Sbjct: 121 LAFGKQYLHHVRKELNVEDMKKACEYFLGKHDFKAFMSPGSSAK--TTVRTITDFYIEEN 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
++++ + GFLY VR +V L+ +G V I+ RK + PP+
Sbjct: 179 KNVIRIFISADGFLYNMVRIIVGTLINVGTGKTKLQDVNNIINDGIRKNA---GMCVPPN 235
Query: 292 GLCLVEVKY 300
GL L +V Y
Sbjct: 236 GLVLEKVFY 244
>gi|347530584|ref|YP_004837347.1| tRNA pseudouridine synthase A [Roseburia hominis A2-183]
gi|345500732|gb|AEN95415.1| tRNA pseudouridine synthase A [Roseburia hominis A2-183]
Length = 260
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 140/252 (55%), Gaps = 9/252 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
++++AYDGT Y GWQ Q + TI+ ++ + L + L E++ + GASRTD+GVH+ G V
Sbjct: 9 KMIVAYDGTNYKGWQVQPNGITIEEVLNRHL---SSLLGEEITVTGASRTDSGVHSLGNV 65
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T + I ALN LP DI V++ ++H R+ K Y Y+I N
Sbjct: 66 AIFDTTTRMPA-DKISFALNQRLPEDIVVQDSCEVPADWHPRYQNSRKTYEYRILNRTFR 124
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P +R Y + L+ M +AA Y G+HDF +F V N ++ V++++ V +
Sbjct: 125 MPTRRLDTYFYHHSLDVEKMSRAAVYLEGEHDFKSFCAV--NAQVKTTVRTIYACSVTKA 182
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
++ + V G+GFLY VR + L+Q+G I P+ + +ILA +DR+ +AP H
Sbjct: 183 DDIITIRVTGNGFLYNMVRIIAGTLIQVGGGQIEPEQIEQILAARDREAAGP---TAPAH 239
Query: 292 GLCLVEVKYNEE 303
GL ++ ++Y EE
Sbjct: 240 GLTMMGIEYMEE 251
>gi|311029085|ref|ZP_07707175.1| Pseudouridylate synthase I [Bacillus sp. m3-13]
Length = 248
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 141/253 (55%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ + ++ YDG + G+Q Q T+Q V++AL R+ K ++++ + RTD GVHA G
Sbjct: 3 RLKCILTYDGAGFEGYQIQKEKRTVQLEVQRALSRIHK--GTEVKVSASGRTDAGVHAVG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF +P S + + ALN LP DI V+++ + +FHARF K Y YK+
Sbjct: 61 QVLHFDSPLSIP-VAAWQNALNAHLPKDIWVKKVESVSGDFHARFDVVKKEYRYKVSLAK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ F R YH Y L+ +++A + +G+HDF++F + + + + V++++ +V+
Sbjct: 120 DFNVFDRDQVYHYPYPLDLEAVKEACGHLIGEHDFTSFCSAKTE--VEDKVRTIYSLEVV 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
G L+ + G+GFLY VR +V LL+IG+ P + IL +DR K +AP
Sbjct: 178 RNGEELEFRIIGNGFLYNMVRIIVGTLLEIGQGKKLPRDIFSILEARDRGAAGK---TAP 234
Query: 290 PHGLCLVEVKYNE 302
HGL L V Y++
Sbjct: 235 AHGLYLWNVVYDD 247
>gi|282852680|ref|ZP_06262022.1| tRNA pseudouridine synthase A [Lactobacillus gasseri 224-1]
gi|282556422|gb|EFB62042.1| tRNA pseudouridine synthase A [Lactobacillus gasseri 224-1]
Length = 258
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 144/251 (57%), Gaps = 9/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++L +AYDG + G+Q Q + T+Q ++E+AL ++TK +R + + G+ RTD GVHA G
Sbjct: 5 RYKLTMAYDGHLFHGFQIQPNERTVQGVIEEALKKMTKGKR--VVVHGSGRTDAGVHAKG 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P +++ ALN L+P D + +FH ++S K K Y Y +
Sbjct: 63 QVIHFDYPGKEIPAKNMMLALNALMPIDTVFFDSEIVDSDFHVQYSTKGKWYRYIVDQHR 122
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
DPF R Y H Y L+ LM++AA+ +G+HDF++F ++++ V++++ ++
Sbjct: 123 FTDPFNRFYTGHYPYPLDIALMKKAAKDLIGEHDFTSF--AASGGQIVDKVRTIYYVNIT 180
Query: 230 E--MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ + G+GFLY VR +V LL+IG + P D +P++LA +DR+E+ +
Sbjct: 181 SDPDNKKIIFDFIGNGFLYNMVRILVGTLLEIGNKKRPVDDIPRVLAAKDRQEVRT---T 237
Query: 288 APPHGLCLVEV 298
AP GL L V
Sbjct: 238 APASGLYLQHV 248
>gi|429765159|ref|ZP_19297461.1| tRNA pseudouridine synthase A [Clostridium celatum DSM 1785]
gi|429186902|gb|EKY27831.1| tRNA pseudouridine synthase A [Clostridium celatum DSM 1785]
Length = 244
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 132/249 (53%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L + YDGT Y GWQ Q TIQ +E+A+ VTK E L G+SRTD GVHA G +
Sbjct: 5 KLTLEYDGTNYYGWQKQNGMKTIQGELEEAIFNVTK---EKCDLTGSSRTDAGVHAKGFI 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F T S ALN LP DI V + FHAR+ AK K Y Y I N V
Sbjct: 62 ANFKTN-SKVPPNKFREALNVKLPNDIVVVKSEEVEESFHARYCAKGKTYEYSILNSDVP 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
R+ YH Y L+ M+ AA+ F+G HDF+AF + + ++++F +V +
Sbjct: 121 SALIRNTVYHYKYNLDVEAMKIAAKQFIGTHDFAAF--KTQGSSVKGTIRTIFDVNVEKN 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
++++ V+G GFLY VR +V L+ +G+ + I+ +DR LA PP+
Sbjct: 179 DEIIKISVKGDGFLYNMVRIIVGTLINVGRGKTDATDIINIINKKDR-TLA--GDCVPPN 235
Query: 292 GLCLVEVKY 300
GL L EV Y
Sbjct: 236 GLILKEVYY 244
>gi|430842461|ref|ZP_19460376.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E1007]
gi|431081677|ref|ZP_19495767.1| tRNA pseudouridine synthase A [Enterococcus faecium E1604]
gi|431118130|ref|ZP_19498084.1| tRNA pseudouridine synthase A [Enterococcus faecium E1613]
gi|431592305|ref|ZP_19521541.1| tRNA pseudouridine synthase A [Enterococcus faecium E1861]
gi|430493542|gb|ELA69845.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E1007]
gi|430565609|gb|ELB04755.1| tRNA pseudouridine synthase A [Enterococcus faecium E1604]
gi|430568087|gb|ELB07144.1| tRNA pseudouridine synthase A [Enterococcus faecium E1613]
gi|430591930|gb|ELB29957.1| tRNA pseudouridine synthase A [Enterococcus faecium E1861]
Length = 248
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 141/254 (55%), Gaps = 10/254 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +IAYDGT + G+Q Q + T+Q VEK L ++ +++ + G+ RTD GVHA G
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMAN--GKEITVFGSGRTDAGVHAIG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P LE + AL+ P DI VR++ EFHAR+ K K Y +++
Sbjct: 61 QVIHFDYP-EERPLERMRFALDTQSPEDIAVRQVEIVSEEFHARYLVKEKTYQFRVDIGK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF--RFD 227
PF+RHYA + Y L+ +++A +G HDF++F + + V++++ + +
Sbjct: 120 PRSPFRRHYASYYPYPLDLGKIQRALPDLLGTHDFTSF--CASGSSIEDKVRTIYEAKME 177
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V E L G+GFLY+ +R +V LL+IG +P D +P I+A +DR +
Sbjct: 178 VNETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGP---T 234
Query: 288 APPHGLCLVEVKYN 301
A P GL L EVKY
Sbjct: 235 AHPEGLYLYEVKYE 248
>gi|167627942|ref|YP_001678442.1| tRNA pseudouridine synthase A [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|189029995|sp|B0U0B1.1|TRUA_FRAP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|167597943|gb|ABZ87941.1| tRNA-pseudouridine synthase I [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 258
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 139/254 (54%), Gaps = 9/254 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I Y G Y GWQ Q+ P+IQ +EKAL +K+ +++ + A RTDTGVHA QV
Sbjct: 6 LQIEYFGKNYCGWQRQSHSPSIQEELEKAL---SKIANQNIEVTCAGRTDTGVHATSQVV 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F + + L S N LLP I++ +I +F++RF+A ++ Y+Y IYN A+
Sbjct: 63 NFHSDADRN-LSSWMRGTNALLPQGIKILDIKEVDNDFNSRFTATNRTYNYIIYNSAISS 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P + +LN M QA +Y +G+ DF++F + Q P +++ + + I+ G
Sbjct: 122 PILAEHCLWENRQLNIDKMNQACKYLLGEQDFTSFRSSQCQSN--TPFRNIQKAEFIKQG 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ + EV G+ FL+ +RN + LL+IG E P+ + +L +DR K A +A HG
Sbjct: 180 SFIVFEVVGNAFLHHMIRNFIGSLLKIGLEFESPEWIKLVLEAKDR---TKAAETAKAHG 236
Query: 293 LCLVEVKYNEEHLR 306
L V V+Y E R
Sbjct: 237 LYFVGVEYPEFSFR 250
>gi|365839710|ref|ZP_09380938.1| tRNA pseudouridine synthase A [Anaeroglobus geminatus F0357]
gi|364563847|gb|EHM41637.1| tRNA pseudouridine synthase A [Anaeroglobus geminatus F0357]
Length = 279
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 142/253 (56%), Gaps = 13/253 (5%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L IAYDGT + G+Q Q+ P++Q +E+AL L +R+ GA+RTDTGVHA GQV
Sbjct: 10 LRIAYDGTDFFGFQRQSDFPSVQQTMEEAL---EGLYGCRIRVYGAARTDTGVHARGQVV 66
Query: 113 HFITPFSYDGL--ESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
+F +++D + + + AL G LPP I V + +F R K K Y Y + N V
Sbjct: 67 NF---YAHDRIPVDKLPYALKGSLPPTIVVLDAVEKAYDFSVRHDNKGKHYRYIVVNGPV 123
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
DPF YA++ L+ M++AA +G HDFSA+ N NPVK+++ V
Sbjct: 124 HDPFMLRYAWYIRKPLDIEAMQRAANTLIGTHDFSAYKGA--NTTPHNPVKTMYEIAVSR 181
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G ++++V GSGFLY VRN+V L+ G P+ + +IL +DR++L +AP
Sbjct: 182 AGGRVRIDVLGSGFLYHMVRNIVGALVDAGLHRKSPEALARILDGRDRRKLGA---TAPA 238
Query: 291 HGLCLVEVKYNEE 303
GL L EV Y ++
Sbjct: 239 QGLFLEEVFYTKD 251
>gi|328951883|ref|YP_004369217.1| tRNA pseudouridine synthase A [Desulfobacca acetoxidans DSM 11109]
gi|328452207|gb|AEB08036.1| tRNA pseudouridine synthase A [Desulfobacca acetoxidans DSM 11109]
Length = 267
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 135/250 (54%), Gaps = 10/250 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L + YDGT Y GWQ Q + TIQ +VE L R+T + +RL + RTD GVHA GQVA
Sbjct: 27 LTLEYDGTAYHGWQRQANALTIQEVVETCLARLTG---QVIRLHSSGRTDAGVHALGQVA 83
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
HF+T S L + LN LLP D+ + ++ A FHAR+SA +K Y Y+I N V
Sbjct: 84 HFLTTSSLP-LSAFREGLNSLLPRDLAILKVCDAPAGFHARYSATAKTYEYRILNRPVRS 142
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM- 231
P +Y + L+ L+RQAA Y +G+ DF+AF + + V E
Sbjct: 143 PVHCNYCWWLARPLDQGLLRQAAGYILGEQDFAAF--QASGGSVKTTTRKVMAASWEEKP 200
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G ++ +GFL VR +V ++++G P + ++LA +DR++ +AP
Sbjct: 201 GGWRIFQITANGFLRGMVRALVGTMVEVGWGKRSPGDLKRLLAARDRRQAGP---TAPAA 257
Query: 292 GLCLVEVKYN 301
GL LVEV+Y+
Sbjct: 258 GLYLVEVRYD 267
>gi|149006661|ref|ZP_01830347.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP18-BS74]
gi|418096699|ref|ZP_12733810.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA16531]
gi|147761576|gb|EDK68540.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP18-BS74]
gi|353768420|gb|EHD48944.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA16531]
Length = 249
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG + G+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFDGFQRQPHARSVQEEIEKTLTRLNK--GQTITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLRFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P +RHYA H Y L+ M+ A + G HDF+ F + + V+++ +I
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGF--TASGTSVEDKVRTITEASLI 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIALILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|196233677|ref|ZP_03132518.1| tRNA pseudouridine synthase A [Chthoniobacter flavus Ellin428]
gi|196222347|gb|EDY16876.1| tRNA pseudouridine synthase A [Chthoniobacter flavus Ellin428]
Length = 251
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 137/255 (53%), Gaps = 11/255 (4%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLV--GASRTDTGVH 106
+ +++IAYDG + GWQ Q + +Q +E A + R+V G+ RTD GVH
Sbjct: 5 LRLKMLIAYDGRPFRGWQSQATKDAVQDHMEAAFAKTI-----GGRVVVHGSGRTDAGVH 59
Query: 107 AWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIY 166
A Q+AH P + + + ALN LPP+IRV +S A P+FHARF A+ KIY Y+++
Sbjct: 60 ALAQIAHADVPAARLEVSAWRGALNNFLPPEIRVLRVSRAAPDFHARFHARGKIYTYRMW 119
Query: 167 NDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAF-VNVQRNDRLLNPVKSVFR 225
N + + P + A+H KL+ ++RQ A+ GKHDF+ F N + V+++
Sbjct: 120 NASYLHPLEIGRAWHMPSKLDLDILRQGAQMLEGKHDFAGFAANRAPGYAAEDTVRTIQH 179
Query: 226 FDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
+ G LL L EG+GFLY+ VR + L++ + + ++LA + K K +
Sbjct: 180 ICLTRRGDLLNLRFEGNGFLYKMVRLLTGTLVRCAQGRAELTFIKELLAGKGAK---KTS 236
Query: 286 LSAPPHGLCLVEVKY 300
+AP GL L V Y
Sbjct: 237 FAAPAEGLYLTRVLY 251
>gi|449981133|ref|ZP_21817638.1| tRNA pseudouridine synthase A [Streptococcus mutans 5SM3]
gi|449176090|gb|EMB78456.1| tRNA pseudouridine synthase A [Streptococcus mutans 5SM3]
Length = 249
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 142/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDGT ++G+Q Q T+Q +EK L+R+ + +++ GA RTD GVHA+G
Sbjct: 3 RYKAIISYDGTNFSGFQRQPQVRTVQEEIEKTLLRLN--SGQAVKVHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + L+ P DI V ++ +FHAR+ K Y + +
Sbjct: 61 QVIHFDLPQLRD-LEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHRKTYEFLVDLGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV- 228
+P RHYA H YK++ ++++ A + G HDF+ F + N V+++ R V
Sbjct: 120 PKNPLMRHYATHFPYKVDFSVVKAAIKKLRGTHDFTGF--TASGTSVENKVRTISRATVE 177
Query: 229 -IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ L GSGFLY+QVRNMV LL+IG +P D + +IL + DR LA +
Sbjct: 178 KDDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDR-SLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E+ Y++
Sbjct: 235 AASNGLYLKEIIYDD 249
>gi|270293156|ref|ZP_06199367.1| tRNA pseudouridine synthase A [Streptococcus sp. M143]
gi|270279135|gb|EFA24981.1| tRNA pseudouridine synthase A [Streptococcus sp. M143]
Length = 249
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GQAVTVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
Q HF P+ + E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QAIHFDLPYQMNE-EKLRFALDTQSPEDIDVISIEIVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M++A + G HDF+ F D++ ++ D
Sbjct: 120 PKNPMRRHYATHFPYPLDVEQMQEAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLSVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --KTGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|210615874|ref|ZP_03290836.1| hypothetical protein CLONEX_03055 [Clostridium nexile DSM 1787]
gi|210150077|gb|EEA81086.1| hypothetical protein CLONEX_03055 [Clostridium nexile DSM 1787]
Length = 247
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 95/251 (37%), Positives = 128/251 (50%), Gaps = 11/251 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L I YDG+RY GWQ + I K + K+ ED+ L SRT+ GVHA+GQ
Sbjct: 5 KLTIEYDGSRYQGWQRLGKDESTNTIANKITEVIKKMTNEDIELFCGSRTEVGVHAYGQA 64
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T +E I LN LP DI + +I FHA +A SKIY Y+I V
Sbjct: 65 ASFKTTTDMTLIE-IQHYLNRYLPMDIAITDIEEKPERFHASLNATSKIYMYRISVSEVP 123
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
F+R Y YHS + + LM+QAA VGKHDF F V++N + VK ++ DV +
Sbjct: 124 SVFERKYVYHSFKRPDVDLMKQAAILLVGKHDFKKFSTVKKNK---STVKEIYDIDVYDD 180
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP-- 289
G LQ+ + G+ FL+ R ++ LL IG + + I + + A SAP
Sbjct: 181 GEELQITLHGNDFLHNMARMILGTLLDIGVGNRKKEDIELIFDSN-----SDVAASAPAD 235
Query: 290 PHGLCLVEVKY 300
P GL L EV Y
Sbjct: 236 PKGLYLQEVLY 246
>gi|431438075|ref|ZP_19513238.1| tRNA pseudouridine synthase A [Enterococcus faecium E1630]
gi|431760104|ref|ZP_19548708.1| tRNA pseudouridine synthase A [Enterococcus faecium E3346]
gi|430586910|gb|ELB25152.1| tRNA pseudouridine synthase A [Enterococcus faecium E1630]
gi|430625373|gb|ELB62013.1| tRNA pseudouridine synthase A [Enterococcus faecium E3346]
Length = 248
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 141/254 (55%), Gaps = 10/254 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +IAYDGT + G+Q Q + T+Q VEK L ++ +++ + G+ RTD GVHA G
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMAN--GKEITVFGSGRTDAGVHAIG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P LE + AL+ P DI VR++ EFHAR+ K K Y +++
Sbjct: 61 QVIHFDYP-EERPLERMRFALDTQSPDDIAVRQVEIVSEEFHARYLVKEKTYQFRVDIGK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF--RFD 227
PF+RHYA + Y L+ +++A +G HDF++F + + V++++ + +
Sbjct: 120 PRSPFRRHYASYYPYPLDLGKIQRALPDLLGTHDFTSF--CASGSSIEDKVRTIYEAKME 177
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V E L G+GFLY+ +R +V LL+IG +P D +P I+A +DR +
Sbjct: 178 VNETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGP---T 234
Query: 288 APPHGLCLVEVKYN 301
A P GL L EVKY
Sbjct: 235 AHPEGLYLYEVKYE 248
>gi|251781741|ref|YP_002996043.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242390370|dbj|BAH80829.1| phosphomethylpyrimidine kinase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
Length = 249
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 144/258 (55%), Gaps = 16/258 (6%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++R I+YDGT ++G+Q Q+ T+Q +EK L ++ ++ + + GA RTD GVHA+G
Sbjct: 3 RYRATISYDGTLFSGFQRQSHARTVQEEIEKTLQKLASVQ--PVPIHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + AL+ P DI V +++ +FH R+ SK Y + + N
Sbjct: 61 QVIHFDLPQKRD-LEKLRFALDTQTPADIDVVDLAIVADDFHCRYQKHSKTYEFLVDNGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P RHYA H Y L+ M++A + VG HDF+ F + + N V+++ ++
Sbjct: 120 PKNPMMRHYATHYPYPLDINKMQEAIKDLVGTHDFTGFTAAGTS--VENKVRTITEATLV 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ L G+GFLY+QVRNMV LL+IG +P + + IL +++R+ L+
Sbjct: 178 QDDKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVEQIKVILDSKNRQ------LA 231
Query: 288 APP---HGLCLVEVKYNE 302
P +GL L E++Y +
Sbjct: 232 GPTPAGNGLYLKEIRYED 249
>gi|295093425|emb|CBK82516.1| pseudouridylate synthase I [Coprococcus sp. ART55/1]
Length = 247
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 142/255 (55%), Gaps = 13/255 (5%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+R +YDGTRY GW+ +T+ T++ +E L R+ + + + GA RTD GVHA
Sbjct: 3 NYRFTFSYDGTRYHGWESKTNADTVEGRIEAVLTRMVDAK---VDIHGAGRTDAGVHARA 59
Query: 110 QVAHFITPFSYDGL-ESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
VA+ D E I LN LP DI +++ A FHAR +A K+Y Y +Y
Sbjct: 60 MVAN--GRLETDKTPEEIKDYLNRYLPADICALDVAVAGDRFHARLNATGKVYEYTLYVG 117
Query: 169 AVMDPFQRHYAYH--SVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRF 226
A F R+Y + L+ +M++AA Y VGKHDF +F N + V++++
Sbjct: 118 AEKPVFDRNYVWCVPQGSALDVDVMKKAASYLVGKHDFRSFCG--NNKMKKSTVRTIYDV 175
Query: 227 DVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
D+++ G +++ G+GFL VR + L+++G + + +P+I+A DR +LA
Sbjct: 176 DIVKEGDYVRMRFHGNGFLQNMVRILTGTLVEVGYGNMSAEHIPEIIAGMDR-QLA--GP 232
Query: 287 SAPPHGLCLVEVKYN 301
+APPHGLCL++V+Y+
Sbjct: 233 TAPPHGLCLMKVEYD 247
>gi|449990072|ref|ZP_21821315.1| tRNA pseudouridine synthase A [Streptococcus mutans NVAB]
gi|449182075|gb|EMB84121.1| tRNA pseudouridine synthase A [Streptococcus mutans NVAB]
Length = 249
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 142/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDGT ++G+Q Q T+Q +EK L+R+ + +++ GA RTD GVHA+G
Sbjct: 3 RYKAIISYDGTNFSGFQRQPQMRTVQEEIEKTLLRLN--SGQAVKIHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + + P DI V ++ +FHAR+ K Y + +
Sbjct: 61 QVIHFDLPQQRD-LEKLRFGFDTQTPDDIDVIQVEQVADDFHARYQKHRKTYEFLVDLGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV- 228
+P RHYA H YK++ ++++ A + G HDF+ F + + N ++++ R V
Sbjct: 120 PKNPLMRHYATHFPYKVDFSVVKAAIKKLRGTHDFTGFTAAGTS--VENKIRTISRATVE 177
Query: 229 -IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ L GSGFLY+QVRNMV LL+IG +P D + +IL + DR LA +
Sbjct: 178 KDDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDR-SLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E+ Y++
Sbjct: 235 AASNGLYLKEIIYDD 249
>gi|399545170|ref|YP_006558478.1| tRNA pseudouridine synthase A [Marinobacter sp. BSs20148]
gi|399160502|gb|AFP31065.1| tRNA pseudouridine synthase A [Marinobacter sp. BSs20148]
Length = 303
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 95/251 (37%), Positives = 135/251 (53%), Gaps = 8/251 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
LV+ YDG + GWQ Q S I+ + ++ +K+ D+ LV A RTD GVHA Q+
Sbjct: 21 LVLEYDGREFHGWQQQKS--GIRAVQQQLAKAASKVADHDVELVCAGRTDAGVHASYQLV 78
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
HF TP S + S +N P DI VR +FHARFSA + Y Y IYN+ V
Sbjct: 79 HFDTP-SLRTIRSWVMGINTASPFDISVRWAGQCQGDFHARFSAVYRRYRYIIYNNPVRP 137
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
QR + LN M QAA+ VG+HDFSAF +P++ V V+ G
Sbjct: 138 SIQRGQVSWNFRPLNAENMHQAAQALVGEHDFSAFRAAGCQSH--SPIRFVQNISVMRKG 195
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
L ++V+ + FL+ VRN+ L+ +G + PD + ++LAT+DR++ ++APP G
Sbjct: 196 DYLVIDVQANAFLHHMVRNIAGALMAVGCQEQVPDWIGQVLATKDRRQA---GVTAPPDG 252
Query: 293 LCLVEVKYNEE 303
L LV+V Y E
Sbjct: 253 LYLVDVGYPAE 263
>gi|392330643|ref|ZP_10275258.1| tRNA pseudouridine synthase A [Streptococcus canis FSL Z3-227]
gi|391418322|gb|EIQ81134.1| tRNA pseudouridine synthase A [Streptococcus canis FSL Z3-227]
Length = 249
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 143/258 (55%), Gaps = 16/258 (6%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDGT ++G+Q Q+ T+Q +EK L ++ ++ + + GA RTDTGVHA+G
Sbjct: 3 RYKATISYDGTLFSGFQRQSHVRTVQEEIEKTLQKLASGQQ--ILIHGAGRTDTGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + AL+ P DI V ++ +FH R+ SK Y + +
Sbjct: 61 QVIHFDLPQKRD-LEKLRFALDTQTPDDIDVIKLEIVADDFHCRYQKHSKTYEFLVDCGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P RHYA H Y L+ + M++A + VG HDF+ F + N V+++ +I
Sbjct: 120 PKNPMMRHYATHYPYPLDMSKMQEAIKDLVGTHDFTGFTAA--GTSVENKVRTITEATLI 177
Query: 230 E--MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ L G+GFLY+QVRNMV LL+IG +P + + IL +Q+R+ L+
Sbjct: 178 QDDKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVEQIKVILTSQNRQ------LA 231
Query: 288 APP---HGLCLVEVKYNE 302
P +GL L E++Y +
Sbjct: 232 GPTPAGNGLYLKEIRYED 249
>gi|317471507|ref|ZP_07930858.1| tRNA pseudouridine synthase [Anaerostipes sp. 3_2_56FAA]
gi|316901002|gb|EFV22965.1| tRNA pseudouridine synthase [Anaerostipes sp. 3_2_56FAA]
Length = 249
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 137/252 (54%), Gaps = 12/252 (4%)
Query: 52 RLVIAYDGTRYAGWQF---QTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
RL I YDGTRY GWQ + TIQ +E L +K+ E ++++G+ RTD GVHA
Sbjct: 7 RLKIEYDGTRYQGWQKLGKNANASTIQGKLESVL---SKMTGESIQIIGSGRTDAGVHAC 63
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQ+A+F T S+ E I L LP DI + FH+R +AK K Y Y+I
Sbjct: 64 GQIANFHTDCSFSCRE-IKEYLTKYLPSDIGIVTADEVSERFHSRLNAKQKTYQYRIAIP 122
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
++ F+R Y + LN M +AA + +G HDF F +V++ + + V++++ +
Sbjct: 123 GTVNVFERKYLWKYPETLNIEKMNKAAAFCLGTHDFLGFSSVKKTKK--STVRTIYSIVI 180
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E + ++L G GFLY VR + L +IG + P+ + + ++DRK+ ++A
Sbjct: 181 EEEHSEIRLSFTGDGFLYNMVRILTGTLAEIGAGSRDPESIFHVFQSKDRKDA---GITA 237
Query: 289 PPHGLCLVEVKY 300
PP GL L+ V+Y
Sbjct: 238 PPQGLFLMNVEY 249
>gi|187779482|ref|ZP_02995955.1| hypothetical protein CLOSPO_03078 [Clostridium sporogenes ATCC
15579]
gi|187773107|gb|EDU36909.1| tRNA pseudouridine synthase A [Clostridium sporogenes ATCC 15579]
Length = 246
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 90/250 (36%), Positives = 135/250 (54%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQT-SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDG++Y GWQ Q + TIQ +E L +T ED+ L+G+ RTD GVHA Q
Sbjct: 5 KLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTG---EDINLIGSGRTDAGVHANMQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T F E ++ LP DI V + FH+R + K K Y YKI N
Sbjct: 62 VANFHTNFQGSTNEILNYCYE-YLPKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNKKF 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
D F R Y+YH L+ M++A Y VG+HDF++F + + + V++++ D+I+
Sbjct: 121 HDVFSRKYSYHVPQTLDIEAMKEACTYLVGRHDFASFTAARSKKK--STVRTLYSIDIIK 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+ + GSGFL++ +R + L++IG + P V IL +DR+ K + +AP
Sbjct: 179 KDGYVDIVYLGSGFLHKMIRILTGTLIEIGLHNLSPMNVKTILEAEDRR---KASSTAPS 235
Query: 291 HGLCLVEVKY 300
GL + V Y
Sbjct: 236 QGLFMTSVTY 245
>gi|220915529|ref|YP_002490833.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-1]
gi|219953383|gb|ACL63767.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-1]
Length = 245
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 99/251 (39%), Positives = 137/251 (54%), Gaps = 12/251 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+LV+ YDGT Y GWQ Q + P+IQ VE+AL + K R R+ A RTD GVHA GQV
Sbjct: 5 KLVLEYDGTAYVGWQVQPNGPSIQAEVERALATLHKAPR---RVTAAGRTDAGVHARGQV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
F +++ +N LLPPD+ VR S A F AR SA+ K Y Y I N
Sbjct: 62 VSFPEERPLP-VKAYVMGMNALLPPDVAVRAASLAPDGFDARRSARGKRYRYVIENLPTR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRND-RLLNPVKSVFRFDVI- 229
P R A+ + L +R+AA + VG+HDF+AF Q +D + V+ V R DV+
Sbjct: 121 APLTRLQAWQHFHPLELANVREAAAHLVGRHDFAAF---QASDCACEHAVREVRRLDVVG 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E G +++ +E + F+ VRN+V L+++G+ P + +LA DR E +AP
Sbjct: 178 EGGGRIEVVIEATAFVKHMVRNIVGTLVEVGRGRRAPGSMLDLLARGDRTEAGP---TAP 234
Query: 290 PHGLCLVEVKY 300
P GL L EV Y
Sbjct: 235 PQGLFLEEVFY 245
>gi|450131349|ref|ZP_21869440.1| tRNA pseudouridine synthase A [Streptococcus mutans NLML8]
gi|449153944|gb|EMB57571.1| tRNA pseudouridine synthase A [Streptococcus mutans NLML8]
Length = 249
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 141/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDGT ++G+Q Q T+Q +EK L+R+ + +++ GA RTD GVHA+G
Sbjct: 3 RYKAIISYDGTNFSGFQRQPQMRTVQEEIEKTLLRLN--SGQAVKIHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + L+ P DI V ++ FHAR+ K Y + +
Sbjct: 61 QVIHFDLPQQRD-LEKLRFGLDTQTPDDIDVIQVEQVADNFHARYQKHRKTYEFLVDLGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV- 228
+P RHYA H YK++ ++++ A + G HDF+ F + N V+++ R V
Sbjct: 120 PKNPLMRHYATHFPYKVDFSVVKAAIKKLRGTHDFTGF--TASGISVENKVRTISRATVE 177
Query: 229 -IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ L GSGFLY+QVRNMV LL+IG +P D + +IL + DR LA +
Sbjct: 178 KDDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDR-SLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E+ Y++
Sbjct: 235 AASNGLYLKEIIYDD 249
>gi|401682481|ref|ZP_10814372.1| tRNA pseudouridine(38-40) synthase [Streptococcus sp. AS14]
gi|400184132|gb|EJO18377.1| tRNA pseudouridine(38-40) synthase [Streptococcus sp. AS14]
Length = 249
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINK--GQPVVIHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D E + AL+ P DI + +FH+R++ SK Y + +
Sbjct: 61 QVLHFDLPEERDE-EKLRFALDTQTPEDIDFISVEQVSDDFHSRYNKHSKTYEFLVDIGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P RHYA H Y L +L+ +A G HDF+ F D++ ++ RFD
Sbjct: 120 PKNPMMRHYATHYPYPLELSLIEEAIAQLEGTHDFTGFTASGTSVEDKIRTITEAKVRFD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
L G+GFLY+Q+RNMV LL+IG + +P + + +ILA +DR LA +
Sbjct: 180 AER--NFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDR-HLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AGPNGLYLKEIRYEE 249
>gi|429736840|ref|ZP_19270716.1| tRNA pseudouridine synthase A [Selenomonas sp. oral taxon 138 str.
F0429]
gi|429153820|gb|EKX96585.1| tRNA pseudouridine synthase A [Selenomonas sp. oral taxon 138 str.
F0429]
Length = 258
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 100/256 (39%), Positives = 143/256 (55%), Gaps = 17/256 (6%)
Query: 53 LVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
L +AY GT Y G+Q QT P +Q ++E+AL +V E++ L A RTD GVHA+GQV
Sbjct: 10 LKVAYAGTNYHGFQRQTPPVVAVQNVLERALAKVCA---EEVELAAAGRTDAGVHAYGQV 66
Query: 112 AHFITPFSYDG---LESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
+F T DG ++ + A+NGLLPPDI V E A +F AR SA K Y Y++
Sbjct: 67 VNFFT----DGRIPVKRLPRAVNGLLPPDIVVTEAWEAARDFSARHSATGKAYVYRLEQC 122
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
V DPF R+YA+ L+ MR A VG HD+S+F ++PV+++ +
Sbjct: 123 TVPDPFTRNYAWQIFQPLDVEAMRAALAMLVGTHDYSSFRAA--GGAPMSPVRTLDEIRL 180
Query: 229 IEMGA-LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E GA L + G+GFLY VRN+++ ++ +G I + +I A +DR+ + +
Sbjct: 181 TEEGAGRLSCYLHGNGFLYHMVRNIMSTVVSVGIGRISVERFGEIFAVRDRRFASP---T 237
Query: 288 APPHGLCLVEVKYNEE 303
AP GL LV V Y EE
Sbjct: 238 APACGLYLVSVDYEEE 253
>gi|403514344|ref|YP_006655164.1| tRNA pseudouridine synthase A [Lactobacillus helveticus R0052]
gi|403079782|gb|AFR21360.1| tRNA pseudouridine synthase A [Lactobacillus helveticus R0052]
Length = 262
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 143/255 (56%), Gaps = 9/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ +AYDG + G+Q Q T+Q VE AL ++TK +R + + G+ RTD GVHA G
Sbjct: 4 RYKMTMAYDGHLFHGFQLQPDQRTVQGTVEDALKKMTKGKR--IIVQGSGRTDAGVHAIG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + ALN ++P DI FHAR+S K K Y Y++ D
Sbjct: 62 QVIHFDYPGKTIPANRMILALNSMMPTDIIFNNCEIVNENFHARYSIKGKWYRYRVSLDH 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
++PF+R Y H Y L+ M++AA+ +GKHDF++F ++ + V++++ ++
Sbjct: 122 FVNPFKRFYTGHFSYALDVGKMQEAAKDLLGKHDFTSF--AASGGQIEDKVRTIYYVNIA 179
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E + + GSGFLY VR MVA LL+IG P + +++A +DR+E+ + +
Sbjct: 180 KDEKENEIVFDFIGSGFLYNMVRIMVAALLEIGNGRRPVHDLKRVIAAKDRQEVRQ---T 236
Query: 288 APPHGLCLVEVKYNE 302
A GL L V Y+E
Sbjct: 237 AQASGLYLYHVFYDE 251
>gi|417915897|ref|ZP_12559491.1| tRNA pseudouridine synthase A [Streptococcus mitis bv. 2 str. SK95]
gi|342831691|gb|EGU66002.1| tRNA pseudouridine synthase A [Streptococcus mitis bv. 2 str. SK95]
Length = 249
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 137/255 (53%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPHQMDE-EKLRFALDTQSPEDIDVIFIEIVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHY H Y L+ M+ A + G HDF+ F D++ ++ D
Sbjct: 120 PKNPMRRHYTTHFPYPLDVERMQMAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLTVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|335419695|ref|ZP_08550744.1| tRNA pseudouridine synthase A [Salinisphaera shabanensis E1L3A]
gi|334896227|gb|EGM34381.1| tRNA pseudouridine synthase A [Salinisphaera shabanensis E1L3A]
Length = 259
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 137/261 (52%), Gaps = 10/261 (3%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+W + YDG+ Y GWQ Q ++Q +E AL T+L +R + + RTDTGVHA
Sbjct: 1 MRWAACVEYDGSAYHGWQSQPHASSVQDTLEAAL---TRLAAAPIRTICSGRTDTGVHAQ 57
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQ+ HF T + N LP DI ++ + FHARF A ++ Y Y I +
Sbjct: 58 GQIVHFDTEVERSERAWL-LGTNRYLPEDIALQWVVPVPQAFHARFGAVAREYRYWILDR 116
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
R+ AYHS ++L+ M+ AA++ VG HDFSAF + P + + R DV
Sbjct: 117 TAPSALWRNRAYHSHHRLDVDAMQTAAQHLVGYHDFSAFRAAACQAK--TPWRDLTRCDV 174
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ G ++LEV + FL+ VRN+V LL +G+ P + ++LA +DR+ + ++A
Sbjct: 175 VRRGDWIRLEVRANAFLHHMVRNIVGSLLPVGRGERGPAWLAQLLANKDRR---RAGMTA 231
Query: 289 PPHGLCLVEVKYNEEHLRLPA 309
P GL L V Y + LPA
Sbjct: 232 PAQGLSLRRVHYPPD-FELPA 251
>gi|307110841|gb|EFN59076.1| hypothetical protein CHLNCDRAFT_19189, partial [Chlorella
variabilis]
Length = 300
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 138/261 (52%), Gaps = 16/261 (6%)
Query: 54 VIAYDGTRYAGWQFQTSP------PTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHA 107
V+ YDGT Y G+Q Q +P PT+Q VE+AL R T R+ LR+ A RTD GVHA
Sbjct: 7 VLQYDGTAYWGFQLQPAPQGRRAKPTVQLRVEQALCRATGQGRQALRVQAAGRTDAGVHA 66
Query: 108 WGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
GQV F G + ALN L+PPDIR + +++ R++++ K Y Y ++
Sbjct: 67 RGQVVQFCCA-RRQGAAPLLRALNALMPPDIRAVAVQEVPLDWNVRYASR-KTYAYDLHL 124
Query: 168 DAVMDPFQRHYAYHSVY--KLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFR 225
D V DPF + H +L M AA FVG HDFS F N+ + +PVK+V
Sbjct: 125 DPVADPFLHRWRCHPRRPERLRLDAMADAAALFVGTHDFSRFANLGPDATRKSPVKTVLS 184
Query: 226 FDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
+ ++ + +LEV G+GFLY+QVR+M LL +G ++ D + LA +R A
Sbjct: 185 YRLLPLEGGARLEVTGTGFLYKQVRHMTGALLAVGGGSLGADDIAAALAGGERARSAAQR 244
Query: 286 LS------APPHGLCLVEVKY 300
+ A GLCL +V Y
Sbjct: 245 NAFRGWQVAEARGLCLQQVVY 265
>gi|336233235|ref|YP_004589981.1| pseudouridylate synthase I [Buchnera aphidicola (Cinara
tujafilina)]
gi|335345176|gb|AEH39722.1| pseudouridylate synthase I [Buchnera aphidicola (Cinara
tujafilina)]
Length = 264
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 141/267 (52%), Gaps = 10/267 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
KW I YDGT+Y GWQ Q TIQ +E L +K+ ++ L+ A RTD GVH
Sbjct: 2 KWVCGIEYDGTKYFGWQKQKLVCTIQESIENVL---SKIANHNINLICAGRTDRGVHGIT 58
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
Q+ HF+T FS + N LLP DI + + F ARFSA S+ Y Y I+N A
Sbjct: 59 QIVHFLT-FSVRSKKEWLLGANSLLPSDITILWLKKIPENFDARFSALSRSYRYIIFNSA 117
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ F + Y+YH L+ M+ A++Y +G+H+FSAF + + L+P +++F ++
Sbjct: 118 IRSSFLKRYSYHLRKILDIKKMKHASQYLIGQHNFSAFRS--SGCQSLSPYRTIFFIHIL 175
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ + +++ + FLY VRN+V L+ IG P + ++L D+K+ K +AP
Sbjct: 176 QFKKFIIIDIIANSFLYHMVRNIVGCLVLIGLSIHEPLWIKQVL---DKKDHHKKYSTAP 232
Query: 290 PHGLCLVEVKYNEEHLRLPAACPLSSF 316
HGL + Y H +P SSF
Sbjct: 233 SHGLYFLSASY-PSHFLVPNNIYKSSF 258
>gi|431210693|ref|ZP_19500979.1| tRNA pseudouridine synthase A [Enterococcus faecium E1620]
gi|431764935|ref|ZP_19553461.1| tRNA pseudouridine synthase A [Enterococcus faecium E4215]
gi|430570552|gb|ELB09501.1| tRNA pseudouridine synthase A [Enterococcus faecium E1620]
gi|430629706|gb|ELB66095.1| tRNA pseudouridine synthase A [Enterococcus faecium E4215]
Length = 248
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 141/253 (55%), Gaps = 10/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +IAYDGT + G+Q Q + T+Q VEK L ++ +++ + G+ RTD GVHA G
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMAN--GKEITVFGSGRTDAGVHAIG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P LE + AL+ P DI VR++ +FHAR+ K K Y +++
Sbjct: 61 QVIHFDYP-EERPLERMRFALDTQSPEDIAVRQVEIVSEDFHARYLVKEKTYQFRVNIGK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF--RFD 227
PF+RHYA + Y L+ +++A +G HDF++F + + V++++ + +
Sbjct: 120 PRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSF--CASGSSIEDKVRTIYEAKME 177
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V E L G+GFLY+ +R +V LL+IG +P D +P I+A +DR +
Sbjct: 178 VNETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGP---T 234
Query: 288 APPHGLCLVEVKY 300
A P GL L EVKY
Sbjct: 235 AHPEGLYLYEVKY 247
>gi|170727324|ref|YP_001761350.1| tRNA pseudouridine synthase A [Shewanella woodyi ATCC 51908]
gi|238688683|sp|B1KKN8.1|TRUA_SHEWM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|169812671|gb|ACA87255.1| tRNA pseudouridine synthase A [Shewanella woodyi ATCC 51908]
Length = 261
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/259 (37%), Positives = 146/259 (56%), Gaps = 16/259 (6%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I YDG++Y GWQ Q ++Q +E+AL +K+ E + + A RTDTGVHA GQV
Sbjct: 5 LGIEYDGSKYFGWQRQVEVDSVQAQLERAL---SKVANEPISVHCAGRTDTGVHATGQVV 61
Query: 113 HFITPFSYDGLESIHA---ALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
HF T D + A +N LP DI VR +FHARFSA ++ Y Y IYN
Sbjct: 62 HFDT----DAIRKESAWTLGVNVSLPDDIAVRWAKVVDEDFHARFSATARRYRYMIYNYQ 117
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ R H L+ M +AA++FVG+HDF++F + + +P ++V +V
Sbjct: 118 LRPGILRSGVSHYRTHLDENKMHEAAQHFVGEHDFTSFRALHCQSK--SPNRNVHEVNVT 175
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
G + ++++ + FL+ VRN+V L++IG + +P++LA +DR +K A +A
Sbjct: 176 RQGMYICVDIKANAFLHHMVRNIVGSLIEIGLGHQSHEWIPELLALKDR---SKAAPTAK 232
Query: 290 PHGLCLVEVKYNEEHLRLP 308
P+GL +V+V Y EH +LP
Sbjct: 233 PNGLYMVDVTY-PEHFQLP 250
>gi|450066105|ref|ZP_21845802.1| tRNA pseudouridine synthase A [Streptococcus mutans NLML9]
gi|449209263|gb|EMC09795.1| tRNA pseudouridine synthase A [Streptococcus mutans NLML9]
Length = 249
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 141/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDGT ++G+Q Q T+Q +EK L+R+ + +++ GA RTD GVHA+G
Sbjct: 3 RYKAIISYDGTNFSGFQRQPQVRTVQEEIEKTLLRLN--SGQAVKVHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + L+ P DI V ++ +FHAR+ K Y + +
Sbjct: 61 QVIHFDLPQQRD-LEKLRFGLDTQTPDDIDVIQVEQVADDFHARYQKHRKTYEFLVDLGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV- 228
+P RHYA H YK++ ++++ A + G HDF+ F + N V+++ R V
Sbjct: 120 PKNPLMRHYATHFPYKVDFSVVKAAIKKLRGTHDFTGF--TASGTSVENKVRTISRATVE 177
Query: 229 -IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E L GSGFLY+QVRNMV LL+IG + D + +IL + DR LA +
Sbjct: 178 KDEKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMSIDQIDRILESGDR-SLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E+ Y++
Sbjct: 235 AASNGLYLKEIIYDD 249
>gi|441472390|emb|CCQ22145.1| tRNA pseudouridine synthase A [Listeria monocytogenes]
gi|441475533|emb|CCQ25287.1| tRNA pseudouridine synthase A [Listeria monocytogenes N53-1]
Length = 248
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 141/253 (55%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG+ + G+Q Q + T+Q +EKAL ++ K + +R+ + RTDTGVHA G
Sbjct: 3 RYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHK--GKTVRVTASGRTDTGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + E AL + P DI + +FHARF K Y Y +
Sbjct: 61 QVIHFDSELDITA-EKFQKALQVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRTK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ DPF R++A H Y+L+ M+ A++ +G+HDF++F + R +R + V++++ D
Sbjct: 120 IFDPFSRNFALHYPYELDILKMKLASKRLIGEHDFTSFCSA-RTER-DSKVRTLYSIDFY 177
Query: 230 EM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E L + +G+GFLY VR + LL G+ I PD + + L +DR++L + +A
Sbjct: 178 EEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLI--SKTA 235
Query: 289 PPHGLCLVEVKYN 301
PP GL L V Y
Sbjct: 236 PPQGLYLWRVDYE 248
>gi|317495541|ref|ZP_07953909.1| tRNA pseudouridine synthase A [Gemella morbillorum M424]
gi|316914355|gb|EFV35833.1| tRNA pseudouridine synthase A [Gemella morbillorum M424]
Length = 265
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 143/256 (55%), Gaps = 12/256 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L+ YDG+ Y G+Q Q + T+Q +EKAL K+ ++D+R+ + RTD+GVHA+GQV
Sbjct: 5 LLCRYDGSGYHGFQIQPNNNTVQEEIEKAL---KKINKKDIRVYMSGRTDSGVHAYGQVL 61
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
HF T + E+ ALN LP DIR+ ++ + +FH R+++ K YHYK+Y +D
Sbjct: 62 HFDTELNIPN-EAWKKALNANLPADIRIFGVTTSNEDFHVRYNSTRKTYHYKLYIGQNVD 120
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
PF +Y Y N ++A YF+G+HDFS+F +N + + ++ ++ F++
Sbjct: 121 PFLLNYVGQHKYNFNFEKAQKALNYFIGEHDFSSF--CSKNSSVEDKIREIYYFNMYYDK 178
Query: 233 A---LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
++ +V G+GFLY VR ++ + + + V +IL ++RK A +A
Sbjct: 179 TNPRVINFDVCGNGFLYNMVRIIIGTIQDVAAGKYGAEYVKEILDKKERKYAGPKADAA- 237
Query: 290 PHGLCLVEVKYNEEHL 305
GL L EV YN E +
Sbjct: 238 --GLYLKEVIYNNEEI 251
>gi|312135434|ref|YP_004002772.1| tRNA pseudouridine synthase a [Caldicellulosiruptor owensensis OL]
gi|311775485|gb|ADQ04972.1| tRNA pseudouridine synthase A [Caldicellulosiruptor owensensis OL]
Length = 244
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 135/248 (54%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I YDGT Y GWQ Q + TIQ +E+A + KL E++ L+G+ RTD GVHA Q A
Sbjct: 6 LTIEYDGTGYFGWQKQPNKKTIQGTIEEA---IKKLTGEEVNLIGSGRTDRGVHALNQKA 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T S + ALN +LP DI V++ +F AR+SAK K Y Y IYN
Sbjct: 63 NFKTS-SKIPTDKFPLALNSVLPGDISVKDAVEVPLDFSARYSAKQKTYKYLIYNKKSRP 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
R+YAY+ Y+L+ M++A EYF+G++DF +F + + ++ ++ +
Sbjct: 122 ALLRNYAYYYPYELDVDAMQRACEYFIGEYDFKSFCSADSEAK--TTIRHIYNAYLTFEN 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ + + +GFLY R + +L +G + P +P I+ ++DR K + PP G
Sbjct: 180 ECIAIYITANGFLYNMARIIAGTILDVGAGKLKPMDIPLIIESKDRTLAGK---TLPPWG 236
Query: 293 LCLVEVKY 300
L LV+V Y
Sbjct: 237 LYLVDVVY 244
>gi|428171080|gb|EKX40000.1| hypothetical protein GUITHDRAFT_113994 [Guillardia theta CCMP2712]
Length = 268
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 134/238 (56%), Gaps = 15/238 (6%)
Query: 35 NNTVKPPTDDSFPGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLR 94
NN D F++R + YDGT Y G+Q Q P+IQ ++E L R KL+R R
Sbjct: 18 NNATASDDSDLDKTFRYRCNVMYDGTNYNGFQLQHYQPSIQGLLETVLSR--KLQRR-TR 74
Query: 95 LVGASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAA-----VP- 148
+VGA RTD+GVH+ GQV HF + + L+ +N +LP D+++ + VP
Sbjct: 75 VVGAGRTDSGVHSRGQVVHFDSSENITDLQKFQHGMNLMLPLDVKICGLEHVQDLDFVPH 134
Query: 149 -----EFHARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHD 203
++HA +SA+ K+Y Y+I+ V DP RH +H ++ L+R+ A F G HD
Sbjct: 135 LNETRKWHAIYSARKKLYSYRIFIGKVQDPITRHSRHHEYRNVDLDLLREVAAMFEGTHD 194
Query: 204 FSAFVNVQRNDRLLNPVKSVFRFDVI-EMGALLQLEVEGSGFLYRQVRNMVALLLQIG 260
FSAF N + ++ ++ V++++R V+ E ++L+ E G LY+ VRN+V +L +G
Sbjct: 195 FSAFSNTRGDNSTMDTVRTIYRVGVVFEGEGNVRLDFELDGALYKMVRNIVGTILAVG 252
>gi|335040764|ref|ZP_08533886.1| tRNA pseudouridine synthase A [Caldalkalibacillus thermarum TA2.A1]
gi|334179339|gb|EGL81982.1| tRNA pseudouridine synthase A [Caldalkalibacillus thermarum TA2.A1]
Length = 287
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 105/285 (36%), Positives = 140/285 (49%), Gaps = 41/285 (14%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
KW+ +AYDGT YAG+Q Q + TIQ +E L R + R +++VG+ RTD GVHA G
Sbjct: 10 KWKCTVAYDGTAYAGFQRQPNAVTIQGELEAVLKR---MHRHPVQVVGSGRTDAGVHARG 66
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + + + E ALN LP DIR+ FHAR+ + K Y Y I N
Sbjct: 67 QVIHFESSLALEENEWT-KALNAQLPGDIRILRTEKVPASFHARYDVRGKEYRYFICNAP 125
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVN--------VQRNDRLLNPVK 221
V DPF R Y+YH L+ TLM++A F G HDF+AF + V+ D+L V
Sbjct: 126 VHDPFVRQYSYHVPLPLDVTLMQEAGRLFEGTHDFTAFSSAKTEVADKVRTIDKLTLEVL 185
Query: 222 SVFRFDVIEM--------------------------GALLQLEVEGSGFLYRQVRNMVAL 255
V R E G ++ + G+GFLY VR +V
Sbjct: 186 PVGRGTQAEQAKPGFDREVVWPGWAHCPTAGGKPRAGQMITVICRGTGFLYHMVRIIVGT 245
Query: 256 LLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLCLVEVKY 300
L+++GK P V + L +DR LA +APP GL L V Y
Sbjct: 246 LIEVGKGKKSPADVERALKVKDRN-LA--GPTAPPEGLFLWRVFY 287
>gi|401565544|ref|ZP_10806376.1| tRNA pseudouridine(38-40) synthase [Selenomonas sp. FOBRC6]
gi|400187025|gb|EJO21228.1| tRNA pseudouridine(38-40) synthase [Selenomonas sp. FOBRC6]
Length = 258
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/259 (38%), Positives = 144/259 (55%), Gaps = 17/259 (6%)
Query: 53 LVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
L +AYDGT Y G+Q QT P +Q ++E+AL +V E++ L A RTD GVHA+GQV
Sbjct: 10 LKVAYDGTNYRGFQRQTPPVVAVQNVLERALAKVCA---EEVELAAAGRTDAGVHAYGQV 66
Query: 112 AHFITPFSYDG---LESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
+F T DG ++ + A+NGLLPPDI V E A F AR SA K Y Y++
Sbjct: 67 VNFFT----DGRIPVKRLPRAVNGLLPPDIVVTEAWEAARVFSARHSATGKAYVYRLEQC 122
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
V DPF R+YA+ L+ MR A VG HD+S+F ++PV+++ +
Sbjct: 123 TVPDPFTRNYAWQIFQPLDVEAMRAALAMLVGTHDYSSFRAA--GGAPMSPVRTLDEIRL 180
Query: 229 IEMGA-LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E GA L + G+GFLY VRN+++ ++ +G I + +I A +DR+ + +
Sbjct: 181 REEGAGRLSCYLHGNGFLYHMVRNIMSTVVSVGLGRISVERFGEIFAVRDRRFASP---T 237
Query: 288 APPHGLCLVEVKYNEEHLR 306
AP GL LV V Y E+ R
Sbjct: 238 APACGLYLVSVDYEEQADR 256
>gi|336394592|ref|ZP_08575991.1| tRNA pseudouridine synthase A [Lactobacillus farciminis KCTC 3681]
Length = 248
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 142/254 (55%), Gaps = 10/254 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++L IAYDGT++ G+Q Q T+Q ++EKAL ++TK + D+ VG+ RTD GVHA+G
Sbjct: 3 RYKLTIAYDGTKFHGFQRQNDLRTVQGVLEKALTKMTKGQHVDV--VGSGRTDAGVHAFG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P +++ A+N L+P D+ V++ + FHARF K K Y Y++
Sbjct: 61 QVIHFDYPGQMPA-QNMLKAINSLMPLDVLVKDSAIVDENFHARFGVKRKTYQYRVDCGY 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
DPF+R Y H YK++ ++ A + G+HDF++F + N V++++ +
Sbjct: 120 YTDPFKRFYTGHYPYKISVDKIQTALKDLEGEHDFTSF--AASGGVIENKVRTIYSATCV 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ L E G+GFLY VR +VA LL+IG ++ +DR+E +
Sbjct: 178 YNKNNDELVFEFTGNGFLYNMVRILVATLLEIGNGRRDVHDFLRLFEVKDRQEARG---T 234
Query: 288 APPHGLCLVEVKYN 301
AP GL L EV Y+
Sbjct: 235 APASGLYLKEVFYD 248
>gi|226949212|ref|YP_002804303.1| tRNA pseudouridine synthase A [Clostridium botulinum A2 str. Kyoto]
gi|226843950|gb|ACO86616.1| tRNA pseudouridine synthase A [Clostridium botulinum A2 str. Kyoto]
Length = 246
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/250 (36%), Positives = 134/250 (53%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQT-SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDG++Y GWQ Q + TIQ +E L +T RED+ L+ + RTDTGVHA Q
Sbjct: 5 KLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMT---REDINLIASGRTDTGVHANMQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T F E ++ LP DI V + FH+R + K K Y YKI N
Sbjct: 62 VANFHTTFQGSTDEILNYCYE-YLPKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNKKF 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
D F R Y+YH L+ M++A Y VG+HDF++F + + + V++++ D+I+
Sbjct: 121 HDVFSRKYSYHIPETLDINAMKEACTYLVGRHDFASFTAARSKKK--STVRTLYSIDIIK 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+ L GSGFL++ +R + L+++G + V IL +DR+ K +AP
Sbjct: 179 KDGYVDLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILTAEDRR---KAGPTAPS 235
Query: 291 HGLCLVEVKY 300
GL + V Y
Sbjct: 236 QGLFMTSVDY 245
>gi|430836397|ref|ZP_19454378.1| tRNA pseudouridine synthase A [Enterococcus faecium E0680]
gi|431506867|ref|ZP_19515693.1| tRNA pseudouridine synthase A [Enterococcus faecium E1634]
gi|430488524|gb|ELA65195.1| tRNA pseudouridine synthase A [Enterococcus faecium E0680]
gi|430587254|gb|ELB25487.1| tRNA pseudouridine synthase A [Enterococcus faecium E1634]
Length = 248
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 141/253 (55%), Gaps = 10/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +IAYDGT + G+Q Q + T+Q VEK L ++ +++ + G+ RTD GVHA G
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMAN--GKEITVFGSGRTDAGVHAIG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P LE + AL+ P DI VR++ +FHAR+ K K Y +++
Sbjct: 61 QVIHFDYP-EERPLERMRFALDTQSPEDIAVRQVENVSEDFHARYLVKEKTYQFRVDIGK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF--RFD 227
PF+RHYA + Y L+ +++A +G HDF++F + + V++++ + +
Sbjct: 120 PRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSF--CASGSSIEDKVRTIYEAKME 177
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V E L G+GFLY+ +R +V LL+IG +P D +P I+A +DR +
Sbjct: 178 VNETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGP---T 234
Query: 288 APPHGLCLVEVKY 300
A P GL L EVKY
Sbjct: 235 AHPEGLYLYEVKY 247
>gi|337755424|ref|YP_004647935.1| tRNA pseudouridine synthase A [Francisella sp. TX077308]
gi|336447029|gb|AEI36335.1| tRNA pseudouridine synthase A [Francisella sp. TX077308]
Length = 258
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 143/257 (55%), Gaps = 15/257 (5%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I Y G Y GWQ Q+ P+IQ +EKAL +K+ +++ + A RTDTGVHA QV
Sbjct: 6 LQIEYFGKNYCGWQRQSHSPSIQEELEKAL---SKIANQNIEVTCAGRTDTGVHATSQVV 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F + + L S N LLP I++ +I +F++RF+A ++ Y+Y IYN A+
Sbjct: 63 NFHSDADRN-LSSWMRGTNALLPQGIKILDIKEVDNDFNSRFTATNRTYNYIIYNSAISS 121
Query: 173 PFQRHYAYHSVY---KLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
P +A H ++ +LN M QA +Y +G+ DF++F + Q P +++ + + I
Sbjct: 122 PI---FAEHCLWENRQLNIDKMNQACKYLLGEQDFTSFRSSQCQSN--TPFRNIQKAEFI 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G+ + EV G+ FL+ +RN + LL++G E P+ + +L +DR K A +A
Sbjct: 177 KQGSFIVFEVVGNAFLHHMIRNFIGSLLKVGLEFESPEWIKLVLEAKDR---TKAAETAK 233
Query: 290 PHGLCLVEVKYNEEHLR 306
HGL V V+Y E R
Sbjct: 234 AHGLYFVGVEYPEYSFR 250
>gi|405760509|ref|YP_006701105.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SPNA45]
gi|404277398|emb|CCM07916.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SPNA45]
Length = 249
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 140/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GQAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P+ D E + AL+ P DI V I +FH R++ SK Y + +
Sbjct: 61 QVIHFDLPYQMDE-EKLCFALDTQSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P +RHYA H Y L+ M+ A + G HDF+ F + + V+++ +I
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGF--TASGTSVEDKVRTITEASLI 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RN+V LL+IG +P + + IL +DR +LA +
Sbjct: 178 VDETGQFLTFTFSGNGFLYKQIRNIVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|187933357|ref|YP_001884507.1| tRNA pseudouridine synthase A [Clostridium botulinum B str. Eklund
17B]
gi|238691608|sp|B2TIK9.1|TRUA_CLOBB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|187721510|gb|ACD22731.1| tRNA pseudouridine synthase A [Clostridium botulinum B str. Eklund
17B]
Length = 244
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 136/249 (54%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+I +DGT + GWQ Q T+Q +EKA++++T E G+SRTD GVHA V
Sbjct: 5 KLIIEFDGTNFCGWQRQIKDRTVQGCLEKAILKITG---EKSLTNGSSRTDGGVHAKAMV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+FIT S G E ALN LP DI V + +FHAR+S+K K+Y Y I N
Sbjct: 62 ANFITNSSIPG-EKFREALNTKLPDDIAVIKSEEVDMDFHARYSSKGKMYSYTIVNRYEK 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
F + Y +H +LN M++A E F+GKHDF AF++ + + V+++ F + +
Sbjct: 121 LSFGKQYVHHVRKELNVEDMKKACECFIGKHDFKAFMSPGSSAK--TTVRTIQEFYIEKN 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
++++ + GFLY VR +V L+ IG + V I+ RK + + PP+
Sbjct: 179 EDVIKIFISADGFLYNMVRIIVGTLINIGTGKTKLEDVDNIINDGIRK---RSGMCVPPN 235
Query: 292 GLCLVEVKY 300
GL L +V Y
Sbjct: 236 GLVLEKVFY 244
>gi|217077259|ref|YP_002334977.1| tRNA pseudouridine synthase ACD [Thermosipho africanus TCF52B]
gi|226708660|sp|B7IHS2.1|TRUA_THEAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|217037114|gb|ACJ75636.1| tRNA pseudouridine synthase A [Thermosipho africanus TCF52B]
Length = 244
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 141/250 (56%), Gaps = 11/250 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++ + AYDGT++ G+Q Q + T+Q +E AL R+ K E + A RTD GVHA G
Sbjct: 3 RFAIEFAYDGTKFFGYQGQPNVRTVQGDLEDALERIFK---ERIYTQAAGRTDAGVHANG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA F P I ALN LP DI V++ F+ RF+A +IYHY I +
Sbjct: 60 QVAAFNCPIERLTETDIKNALNANLPDDIYVKKAWVVDKSFNPRFAATKRIYHYFISTNE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
D F R+Y ++ Y L+ MR+AA + G+HDFS+F ++ NPV++++R ++
Sbjct: 120 -KDVFMRNYVWNFRYDLDIEAMRKAASFLEGEHDFSSF---KKGKDEKNPVRTIYRIRIL 175
Query: 230 EM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ L+ + VEG FL VRN+V L+++G P+ + ++L + R+E A +A
Sbjct: 176 TLKKGLILIRVEGRSFLRSMVRNIVGSLVRVGLGQWKPEKILEVLEKRSRQEAAG---TA 232
Query: 289 PPHGLCLVEV 298
PPHGL L +V
Sbjct: 233 PPHGLYLYKV 242
>gi|430853259|ref|ZP_19470989.1| tRNA pseudouridine synthase A [Enterococcus faecium E1258]
gi|430541081|gb|ELA81258.1| tRNA pseudouridine synthase A [Enterococcus faecium E1258]
Length = 248
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 141/254 (55%), Gaps = 10/254 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +IAYDGT + G+Q Q + T+Q VEK L ++ +++ + G+ RTD GVHA G
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMAN--GKEITVFGSGRTDAGVHAIG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P LE + AL+ P DI VR++ +FHAR+ K K Y +++
Sbjct: 61 QVIHFDYP-EKRPLERMRFALDTQSPEDIAVRQVEIVSEDFHARYLVKEKTYQFRVDIGK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF--RFD 227
PF+RHYA + Y L+ +++A +G HDF++F + + V++++ + +
Sbjct: 120 PRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSF--CASGSSIEDKVRTIYEAKME 177
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V E L G+GFLY+ +R +V LL+IG +P D +P I+A +DR +
Sbjct: 178 VNETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGP---T 234
Query: 288 APPHGLCLVEVKYN 301
A P GL L EVKY
Sbjct: 235 AHPEGLYLYEVKYE 248
>gi|160894208|ref|ZP_02074986.1| hypothetical protein CLOL250_01762 [Clostridium sp. L2-50]
gi|156864241|gb|EDO57672.1| tRNA pseudouridine synthase A [Clostridium sp. L2-50]
Length = 273
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 141/255 (55%), Gaps = 11/255 (4%)
Query: 51 WRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+R +IAYDGTRY GW+ + TIQ +E L + + E++R+ GA RTD GVHA
Sbjct: 28 YRFLIAYDGTRYHGWEHKKDVVTIQGKIESVL---SLMAGEEVRINGAGRTDAGVHARAM 84
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA P + E I +N LP DI + E++ A FHARF+AK K Y Y IY +
Sbjct: 85 VASGPVP-TDKTPEEIRDYMNHYLPDDICILEVTPAAERFHARFNAKGKHYRYTIYRGRL 143
Query: 171 MDPFQRHYAY--HSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
F R Y + ++ MR+AA Y VG+HDF +F ++ + + V+ +F D+
Sbjct: 144 KPVFDRKYVWTLDEGETIDCERMRKAAAYLVGEHDFKSFCGNKQMKK--STVRKLFAIDI 201
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E G + L+ G+GFL VR + L+++G + P + ++L + R +LA +A
Sbjct: 202 KEDGDYVILDFYGAGFLQNMVRILTGTLVEVGAGRMEPAYMEEVLTGRCR-QLA--GPTA 258
Query: 289 PPHGLCLVEVKYNEE 303
PP GLCL++V Y ++
Sbjct: 259 PPQGLCLMQVDYEKK 273
>gi|339499131|ref|YP_004697166.1| tRNA pseudouridine synthase A [Spirochaeta caldaria DSM 7334]
gi|338833480|gb|AEJ18658.1| tRNA pseudouridine synthase A [Spirochaeta caldaria DSM 7334]
Length = 266
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/268 (36%), Positives = 142/268 (52%), Gaps = 26/268 (9%)
Query: 50 KW-RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLERE-------------DLRL 95
+W +L++AYDGTR+ GWQ + + T+Q ++E+ LI T L R DL+L
Sbjct: 10 RWVKLIVAYDGTRFKGWQ-KGNGRTVQGVLEQTLI--TALPRASGGAIHPGTYTEADLQL 66
Query: 96 VGASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFS 155
GA RTD GVHA GQ A I P S LE++ +A+N LP DI ++ I+ A FHAR+
Sbjct: 67 AGAGRTDAGVHAEGQAASAILPASVS-LEALLSAVNTELPSDIAIKSITPAPDRFHARYH 125
Query: 156 AKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV-NVQRND 214
A S+ Y Y I V +PF+ Y ++ KLN M+QAA G HDF++F + +++
Sbjct: 126 ATSRTYRYSIICGPVGNPFRAAYTWNIPEKLNLETMKQAAALLQGTHDFTSFTADKSKSN 185
Query: 215 RLLNPVKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILA 274
R+ F + V E L + FL+ QVR M +L+Q G + P V +L
Sbjct: 186 RVRTITDIHFEWAVPE----LHIYYTADSFLWNQVRIMTMVLVQAGLGTMSPTGVAALLE 241
Query: 275 TQDRKELAKYALSAPPHGLCLVEVKYNE 302
++R + AP GLCL V Y E
Sbjct: 242 AKNRSLAPE---PAPAKGLCLYSVSYKE 266
>gi|422872241|ref|ZP_16918734.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1087]
gi|328944888|gb|EGG39047.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1087]
Length = 249
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYNFAGFQRQPHARSVQEEIEKTLTRINK--GQPVVIHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D E + AL+ P DI + +FH+R++ SK Y + +
Sbjct: 61 QVLHFDLPEERDE-EKLRFALDTQTPEDIDFISVEQVSNDFHSRYNKHSKTYEFLVDIGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P RHYA H Y L +L+ +A G HDF+ F D++ ++ R+D
Sbjct: 120 PKNPMMRHYATHYPYPLELSLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRYD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
L G+GFLY+Q+RNMV LL+IG + +P + + +ILA +DR LA +
Sbjct: 180 AER--KFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDR-HLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AGPNGLYLKEIRYEE 249
>gi|260558318|ref|ZP_05830514.1| tRNA pseudouridine synthase [Enterococcus faecium C68]
gi|261207023|ref|ZP_05921712.1| tRNA pseudouridine synthase [Enterococcus faecium TC 6]
gi|289565342|ref|ZP_06445792.1| tRNA pseudouridine synthase A [Enterococcus faecium D344SRF]
gi|294615363|ref|ZP_06695236.1| tRNA pseudouridine synthase A [Enterococcus faecium E1636]
gi|294618289|ref|ZP_06697870.1| tRNA pseudouridine synthase A [Enterococcus faecium E1679]
gi|424791183|ref|ZP_18217664.1| tRNA pseudouridine synthase A [Enterococcus faecium V689]
gi|424965709|ref|ZP_18379626.1| tRNA pseudouridine synthase A [Enterococcus faecium P1190]
gi|424970217|ref|ZP_18383746.1| tRNA pseudouridine synthase A [Enterococcus faecium P1139]
gi|424976158|ref|ZP_18389264.1| tRNA pseudouridine synthase A [Enterococcus faecium P1123]
gi|425038374|ref|ZP_18442993.1| tRNA pseudouridine synthase A [Enterococcus faecium 513]
gi|425060468|ref|ZP_18463762.1| tRNA pseudouridine synthase A [Enterococcus faecium 503]
gi|430820873|ref|ZP_19439494.1| tRNA pseudouridine synthase A [Enterococcus faecium E0045]
gi|430823302|ref|ZP_19441874.1| tRNA pseudouridine synthase A [Enterococcus faecium E0120]
gi|430826412|ref|ZP_19444595.1| tRNA pseudouridine synthase A [Enterococcus faecium E0164]
gi|430828802|ref|ZP_19446917.1| tRNA pseudouridine synthase A [Enterococcus faecium E0269]
gi|430850728|ref|ZP_19468485.1| tRNA pseudouridine synthase A [Enterococcus faecium E1185]
gi|430866335|ref|ZP_19481612.1| tRNA pseudouridine synthase A [Enterococcus faecium E1574]
gi|430890779|ref|ZP_19484469.1| tRNA pseudouridine synthase A [Enterococcus faecium E1575]
gi|431380484|ref|ZP_19510865.1| tRNA pseudouridine synthase A [Enterococcus faecium E1627]
gi|431695892|ref|ZP_19524786.1| tRNA pseudouridine synthase A [Enterococcus faecium E1904]
gi|431743996|ref|ZP_19532869.1| tRNA pseudouridine synthase A [Enterococcus faecium E2071]
gi|431747207|ref|ZP_19536006.1| tRNA pseudouridine synthase A [Enterococcus faecium E2134]
gi|260075492|gb|EEW63798.1| tRNA pseudouridine synthase [Enterococcus faecium C68]
gi|260078651|gb|EEW66353.1| tRNA pseudouridine synthase [Enterococcus faecium TC 6]
gi|289162832|gb|EFD10682.1| tRNA pseudouridine synthase A [Enterococcus faecium D344SRF]
gi|291591737|gb|EFF23373.1| tRNA pseudouridine synthase A [Enterococcus faecium E1636]
gi|291595383|gb|EFF26695.1| tRNA pseudouridine synthase A [Enterococcus faecium E1679]
gi|402919941|gb|EJX40500.1| tRNA pseudouridine synthase A [Enterococcus faecium V689]
gi|402942930|gb|EJX61471.1| tRNA pseudouridine synthase A [Enterococcus faecium P1190]
gi|402962420|gb|EJX79362.1| tRNA pseudouridine synthase A [Enterococcus faecium P1139]
gi|402970284|gb|EJX86639.1| tRNA pseudouridine synthase A [Enterococcus faecium P1123]
gi|403019740|gb|EJY32323.1| tRNA pseudouridine synthase A [Enterococcus faecium 513]
gi|403042512|gb|EJY53459.1| tRNA pseudouridine synthase A [Enterococcus faecium 503]
gi|430439133|gb|ELA49511.1| tRNA pseudouridine synthase A [Enterococcus faecium E0045]
gi|430442400|gb|ELA52445.1| tRNA pseudouridine synthase A [Enterococcus faecium E0120]
gi|430445039|gb|ELA54826.1| tRNA pseudouridine synthase A [Enterococcus faecium E0164]
gi|430482786|gb|ELA59887.1| tRNA pseudouridine synthase A [Enterococcus faecium E0269]
gi|430535087|gb|ELA75510.1| tRNA pseudouridine synthase A [Enterococcus faecium E1185]
gi|430551563|gb|ELA91314.1| tRNA pseudouridine synthase A [Enterococcus faecium E1574]
gi|430555827|gb|ELA95356.1| tRNA pseudouridine synthase A [Enterococcus faecium E1575]
gi|430582352|gb|ELB20779.1| tRNA pseudouridine synthase A [Enterococcus faecium E1627]
gi|430597845|gb|ELB35627.1| tRNA pseudouridine synthase A [Enterococcus faecium E1904]
gi|430606059|gb|ELB43431.1| tRNA pseudouridine synthase A [Enterococcus faecium E2071]
gi|430606736|gb|ELB44074.1| tRNA pseudouridine synthase A [Enterococcus faecium E2134]
Length = 248
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 141/254 (55%), Gaps = 10/254 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +IAYDGT + G+Q Q + T+Q VEK L ++ +++ + G+ RTD GVHA G
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMAN--GKEITVFGSGRTDAGVHAIG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P LE + AL+ P DI VR++ +FHAR+ K K Y +++
Sbjct: 61 QVIHFDYP-EERPLERMRFALDTQSPEDIAVRQVEIVSEDFHARYLVKEKTYQFRVDIGK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF--RFD 227
PF+RHYA + Y L+ +++A +G HDF++F + + V++++ + +
Sbjct: 120 PRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSF--CASGSSIEDKVRTIYEAKME 177
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V E L G+GFLY+ +R +V LL+IG +P D +P I+A +DR +
Sbjct: 178 VNETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGP---T 234
Query: 288 APPHGLCLVEVKYN 301
A P GL L EVKY
Sbjct: 235 AHPEGLYLYEVKYE 248
>gi|300362359|ref|ZP_07058535.1| tRNA-pseudouridine synthase I [Lactobacillus gasseri JV-V03]
gi|300353350|gb|EFJ69222.1| tRNA-pseudouridine synthase I [Lactobacillus gasseri JV-V03]
Length = 255
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 141/250 (56%), Gaps = 9/250 (3%)
Query: 55 IAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHF 114
+AYDG + G+Q Q T+Q ++E+AL ++TK +R + + G+ RTD GVHA GQV HF
Sbjct: 1 MAYDGHLFHGFQIQPKERTVQGVIEEALKKMTKGKR--VVVHGSGRTDAGVHAKGQVIHF 58
Query: 115 ITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPF 174
P +++ ALN L+P D + +FH ++S K K Y Y + DPF
Sbjct: 59 DYPGKEIPAKNMMLALNALMPIDTVFFDSEIVNSDFHVQYSTKGKWYRYIVDQHRFTDPF 118
Query: 175 QRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE--MG 232
R Y H Y L+ LM++AA+ +GKHDF++F ++++ V++++ ++
Sbjct: 119 NRFYTGHYPYPLDIDLMQRAAKDLIGKHDFTSF--AASGGQIVDKVRTIYYVNITSDPDN 176
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ + G+GFLY VR +V LL+IG + P D +P++LA +DR+E+ +AP G
Sbjct: 177 KKIIFDFIGNGFLYNMVRILVGTLLEIGNKKRPVDDIPRVLAAKDRQEV---RTTAPASG 233
Query: 293 LCLVEVKYNE 302
L L V Y E
Sbjct: 234 LYLQHVFYEE 243
>gi|189423417|ref|YP_001950594.1| tRNA pseudouridine synthase A [Geobacter lovleyi SZ]
gi|189419676|gb|ACD94074.1| tRNA pseudouridine synthase A [Geobacter lovleyi SZ]
Length = 262
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/252 (37%), Positives = 136/252 (53%), Gaps = 15/252 (5%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+I YDGT Y GWQ QT+ P+IQ VE AL K+ + +R+ + RTD GVHA
Sbjct: 21 KLIIQYDGTNYCGWQEQTNGPSIQETVELAL---AKILGQRVRVQSSGRTDAGVHAVAMP 77
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T + L++ +N LP DI ++ F A A+SK Y Y IYN V
Sbjct: 78 AVFRTESTIP-LKAFVDGVNCHLPDDIAIQSAVEVPTGFRAIGGARSKTYRYTIYNAPVR 136
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P R ++H +L+ M+QAA YFVG+HDF+AF + V S R D +++
Sbjct: 137 SPLNRRTSWHVREQLDLQAMQQAAAYFVGEHDFAAFRGAN-----CSAVTSRRRIDAVQI 191
Query: 232 ---GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
G L+ ++V G GFL VR M L+ +G+ P+ V +LA DR+ + ++A
Sbjct: 192 NQSGPLITIDVTGGGFLKYMVRIMAGTLVDVGRGRFAPEHVAGLLAEPDRQ---RGGVTA 248
Query: 289 PPHGLCLVEVKY 300
PP GL L++V Y
Sbjct: 249 PPQGLSLLQVIY 260
>gi|257885664|ref|ZP_05665317.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,501]
gi|293553909|ref|ZP_06674515.1| tRNA pseudouridine synthase A [Enterococcus faecium E1039]
gi|425058236|ref|ZP_18461622.1| tRNA pseudouridine synthase A [Enterococcus faecium 504]
gi|430839325|ref|ZP_19457266.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E0688]
gi|430858980|ref|ZP_19476598.1| tRNA pseudouridine synthase A [Enterococcus faecium E1552]
gi|257821520|gb|EEV48650.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,501]
gi|291601961|gb|EFF32207.1| tRNA pseudouridine synthase A [Enterococcus faecium E1039]
gi|403038766|gb|EJY49963.1| tRNA pseudouridine synthase A [Enterococcus faecium 504]
gi|430490783|gb|ELA67279.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E0688]
gi|430544499|gb|ELA84528.1| tRNA pseudouridine synthase A [Enterococcus faecium E1552]
Length = 248
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 141/254 (55%), Gaps = 10/254 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +IAYDGT + G+Q Q + T+Q VEK L ++ +++ + G+ RTD GVHA G
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMAN--GKEITVFGSGRTDAGVHAIG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P LE + AL+ P DI VR++ +FHAR+ K K Y +++
Sbjct: 61 QVIHFDYP-EERPLERMRFALDTQSPEDIAVRQVEIVSEDFHARYLVKEKTYQFRVDIGK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF--RFD 227
PF+RHYA + Y L+ +++A +G HDF++F + + V++++ + +
Sbjct: 120 PRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSF--CASGSSIEDKVRTIYEAKME 177
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V E L G+GFLY+ +R +V LL+IG +P D +P I+A +DR +
Sbjct: 178 VNETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGP---T 234
Query: 288 APPHGLCLVEVKYN 301
A P GL L EVKY
Sbjct: 235 AHPEGLYLYEVKYE 248
>gi|238855099|ref|ZP_04645427.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 269-3]
gi|260664884|ref|ZP_05865735.1| tRNA pseudouridine synthase A [Lactobacillus jensenii SJ-7A-US]
gi|238832343|gb|EEQ24652.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 269-3]
gi|260561367|gb|EEX27340.1| tRNA pseudouridine synthase A [Lactobacillus jensenii SJ-7A-US]
Length = 262
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ +AYDG + G+Q Q + T+Q +E+AL +++K +R + + G+ RTD GVHA G
Sbjct: 3 RFKMTMAYDGHLFHGFQKQPNQRTVQGTIEEALKKMSKGKR--IVVHGSGRTDAGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + ALN ++P DI +E S FH ++S K K Y Y + D
Sbjct: 61 QVIHFDFPNDNIPANKMVLALNSMMPTDIVFKEASIVDESFHVQYSTKGKWYRYIVNQDR 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+DPF+R Y H YKL+ + M++AA +G+HDF++F ++++ V+++F +
Sbjct: 121 FVDPFKRFYTGHYPYKLDVSKMQEAASDLLGEHDFTSF--AASGGQIIDKVRTIFYVKIW 178
Query: 230 EMGALLQLEVE--GSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ ++ + G+GFLY VR MV LL+IG P + +++ +DR+E+ +
Sbjct: 179 QKPEENEIVFDFIGNGFLYNMVRIMVGALLEIGNGRRPIHDLERVILAKDRQEVRN---T 235
Query: 288 APPHGLCLVEVKYNE--EHLRL 307
AP GL L V Y E E RL
Sbjct: 236 APASGLYLYHVFYEEVPEKYRL 257
>gi|328958698|ref|YP_004376084.1| tRNA pseudouridine synthase A [Carnobacterium sp. 17-4]
gi|328675022|gb|AEB31068.1| tRNA pseudouridine synthase A [Carnobacterium sp. 17-4]
Length = 279
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 140/253 (55%), Gaps = 10/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++L++ YDGT +AG+Q Q T+Q ++KAL +TK ++ + G+ RTD+GVHA G
Sbjct: 5 RYKLIVQYDGTHFAGFQIQPHDRTVQGEIQKALKIMTK--GIEVIIHGSGRTDSGVHAKG 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF PF +++ ALN L +I V+++S EFHAR++ K Y Y++ +
Sbjct: 63 QVIHFDYPFVIPA-KNMKRALNSLTSDEIFVKDVSIVEDEFHARYNTSGKKYQYRVDLNE 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ DPF+R Y H Y L+ ++ A + G+HDF++F N V++V+ V+
Sbjct: 122 IPDPFKRLYTLHHPYPLDMDKLKNALKDLEGEHDFASFCASHSGRE--NKVRTVYEASVV 179
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ L G+GFLY VR V LLQI P D + ++L +DR E +
Sbjct: 180 KDDFNNELLFTFRGNGFLYNMVRIFVGTLLQIANGLRPADEIQRLLEVKDRNEAGP---T 236
Query: 288 APPHGLCLVEVKY 300
A P GL L+EV Y
Sbjct: 237 AKPQGLYLMEVYY 249
>gi|422853504|ref|ZP_16900168.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK160]
gi|325697516|gb|EGD39402.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK160]
Length = 249
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYNFAGFQRQPHARSVQEEIEKTLTRINK--GQPVVIHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D E + AL+ P DI + +FH+R++ SK Y + +
Sbjct: 61 QVLHFDLPEERDE-EKLRFALDTQTPEDIDFISVEQVSNDFHSRYNKHSKTYEFLVDIGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P RHYA H Y L L+ +A + G HDF+ F D++ ++ R+D
Sbjct: 120 PKNPMMRHYATHYPYPLELGLIEEAIAHLEGTHDFTGFTASGTSVEDKVRTITEAKVRYD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
L G+GFLY+Q+RNMV LL+IG + +P + + +ILA +DR LA +
Sbjct: 180 AER--NFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDR-HLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AGPNGLYLKEIRYEE 249
>gi|419759835|ref|ZP_14286120.1| tRNA pseudouridine synthase ACD [Thermosipho africanus H17ap60334]
gi|407514874|gb|EKF49660.1| tRNA pseudouridine synthase ACD [Thermosipho africanus H17ap60334]
Length = 244
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 141/250 (56%), Gaps = 11/250 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++ + AYDGT++ G+Q Q + T+Q +E AL R+ K E + A RTD GVHA G
Sbjct: 3 RFAIEFAYDGTKFFGYQGQPNVRTVQGDLEDALERIFK---ERIYTQAAGRTDAGVHANG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA F P I ALN LP DI V++ F+ RF+A +IYHY I +
Sbjct: 60 QVAAFNCPIERLTETDIKNALNANLPDDIYVKKAWIVDKSFNPRFAATKRIYHYFISTNE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
D F R+Y ++ Y L+ MR+AA + G+HDFS+F ++ NPV++++R ++
Sbjct: 120 -KDVFMRNYVWNFRYDLDIEAMRKAASFLEGEHDFSSF---KKGKDEKNPVRTIYRIRIL 175
Query: 230 EM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ L+ + VEG FL VRN+V L+++G P+ + ++L + R+E A +A
Sbjct: 176 TLKKGLILIRVEGRSFLRSMVRNIVGSLVRVGLGQWKPEKILEVLEKRSRQEAAG---TA 232
Query: 289 PPHGLCLVEV 298
PPHGL L +V
Sbjct: 233 PPHGLYLYKV 242
>gi|430834845|ref|ZP_19452847.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E0679]
gi|430484914|gb|ELA61861.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E0679]
Length = 248
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 141/254 (55%), Gaps = 10/254 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +IAYDGT + G+Q Q + T+Q VEK L ++ +++ + G+ RTD GVHA G
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMAN--GKEITVFGSGRTDAGVHAIG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P LE + AL+ P DI VR++ +FHAR+ K K Y +++
Sbjct: 61 QVIHFDYP-EERPLERMRFALDTQSPEDIAVRQVEIVSEDFHARYLVKEKTYQFRVDIGK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF--RFD 227
PF+RHYA + Y L+ +++A +G HDF++F + + V++++ + +
Sbjct: 120 PRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSF--CASGSSIEDKVRTIYKAKME 177
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V E L G+GFLY+ +R +V LL+IG +P D +P I+A +DR +
Sbjct: 178 VNETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGP---T 234
Query: 288 APPHGLCLVEVKYN 301
A P GL L EVKY
Sbjct: 235 AHPEGLYLYEVKYE 248
>gi|422861430|ref|ZP_16908070.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK330]
gi|327468298|gb|EGF13783.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK330]
Length = 249
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 138/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYGFAGFQRQLHARSVQEEIEKTLTRINK--GQPVVIHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D E + AL+ P DI + EFH+R++ SK Y + +
Sbjct: 61 QVLHFDLPEERDE-EKLRFALDTQTPEDIDFIRVEQVSDEFHSRYNKHSKTYEFLVDIGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P RHYA H Y L L+ +A G HDF+ F D++ ++ R+D
Sbjct: 120 PKNPMMRHYATHYPYPLELRLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRYD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
L G+GFLY+Q+RNMV LL+IG + +P + + +ILA +DR LA +
Sbjct: 180 AER--NFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDR-HLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AGPNGLYLKEIRYEE 249
>gi|259047524|ref|ZP_05737925.1| tRNA pseudouridine synthase A [Granulicatella adiacens ATCC 49175]
gi|259035715|gb|EEW36970.1| tRNA pseudouridine synthase A [Granulicatella adiacens ATCC 49175]
Length = 249
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 134/251 (53%), Gaps = 8/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++L I YDGT Y G+Q Q + +IQ + KAL ++TK + + + G+ RTD+GVHA G
Sbjct: 3 RYKLTIQYDGTPYVGFQVQENGNSIQAELNKALKKMTKGQY--IPVSGSGRTDSGVHANG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV H P + S+ A+N LLP IR+ A EFHAR+S K Y YK+
Sbjct: 61 QVVHIDYPKRIEA-NSLVRAMNSLLPTSIRIVSAEAVSEEFHARYSVTGKRYIYKVTTAQ 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
V PF R Y H +K + + +A E +G+HDF++F + + + + V+ V + +V
Sbjct: 120 VQSPFLRQYELHHPFKTDVDRINKAFEAVIGEHDFTSFCSTKSDKD--SKVRVVTKAEVK 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
G L EG GFLY VR +V LQIG + + +IL DR +AP
Sbjct: 178 RNGDELIFTFEGKGFLYNMVRILVGTALQIGDGLREVEEMKQILEAMDRNAAGP---TAP 234
Query: 290 PHGLCLVEVKY 300
HGL L EV Y
Sbjct: 235 SHGLYLDEVFY 245
>gi|422758243|ref|ZP_16812005.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322411078|gb|EFY01986.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 249
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 143/258 (55%), Gaps = 16/258 (6%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDGT ++G+Q Q+ T+Q +EK L ++T + + + GA RTD GVHA+G
Sbjct: 3 RYKATISYDGTLFSGFQRQSHERTVQEEIEKTLQKLTG--GQPVPIHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + AL+ P DI V +++ +FH R+ SK Y + + N
Sbjct: 61 QVIHFDLPQKRD-LEKLRFALDTQTPDDIDVVDLAIVADDFHCRYQKHSKTYEFLVDNGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P RHYA H Y L+ M++A + VG HDF+ F + + N V+++ ++
Sbjct: 120 PKNPMMRHYATHYPYPLDMNKMQEAIKTLVGTHDFTGFTAAGTS--VKNKVRTITEATLV 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ L G+GFLY+QVRNMV LL+IG +P + + IL +++R+ L+
Sbjct: 178 QDDKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVEQIKVILDSKNRQ------LA 231
Query: 288 APP---HGLCLVEVKYNE 302
P +GL L E+ Y +
Sbjct: 232 GPTPAGNGLYLKEIHYED 249
>gi|408401009|ref|YP_006858972.1| phosphomethyl pyrimidine kinase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|407967237|dbj|BAM60475.1| phosphomethyl pyrimidine kinase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
Length = 249
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 144/258 (55%), Gaps = 16/258 (6%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDGT ++G+Q Q+ T+Q +EK L ++ ++ + + GA RTD GVHA+G
Sbjct: 3 RYKATISYDGTLFSGFQRQSHARTVQEEIEKTLQKLASVQ--PVPIHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + AL+ P DI V +++ +FH R+ SK Y + + N
Sbjct: 61 QVIHFDLPQKRD-LEKLRFALDTQTPDDIDVVDLAIVADDFHCRYQKHSKTYEFLVDNGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P RHYA H Y L+ M++A + VG HDF+ F + + N V+++ ++
Sbjct: 120 PKNPMMRHYATHYPYPLDINKMQEAIKDLVGTHDFTGFTAAGTS--VENKVRTITEATLV 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ L G+GFLY+QVRNMV LL+IG +P + + IL +++R+ L+
Sbjct: 178 QDDKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVEQIKVILDSKNRQ------LA 231
Query: 288 APP---HGLCLVEVKYNE 302
P +GL L E++Y +
Sbjct: 232 GPTPAGNGLYLKEIRYED 249
>gi|46446316|ref|YP_007681.1| tRNA-pseudouridine synthase I [Candidatus Protochlamydia
amoebophila UWE25]
gi|51316630|sp|Q6MDE3.1|TRUA2_PARUW RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 2; AltName: Full=tRNA-uridine
isomerase I 2
gi|46399957|emb|CAF23406.1| putative tRNA-pseudouridine synthase I [Candidatus Protochlamydia
amoebophila UWE25]
Length = 262
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 136/253 (53%), Gaps = 13/253 (5%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L IAYDG Y GWQ + P+++ ++ +L ++ + + L ASRTD GVHA GQ+
Sbjct: 19 KLKIAYDGQAYFGWQKTPAGPSVEKTLQNSLEQILQ---HTISLQAASRTDKGVHARGQI 75
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
+F+T S L+ +LN LLP D+R+ FH + +K Y Y I D V
Sbjct: 76 VNFLTTKSITDLQKFILSLNSLLPTDLRILSAEKMPSTFHPTLNCVAKEYCYYICYDFVQ 135
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P R Y++H + L M QA +G+HDFSAF N ++N +N + R I +
Sbjct: 136 LPEYRPYSWHCPFPLMLGKMTQAISVLIGEHDFSAFCNFKKN---VNYTDYIRRVQAIHL 192
Query: 232 GAL----LQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
L L + ++G+ FLY+ VRN+V L+ IGK + + +P IL +QDRK ++
Sbjct: 193 EVLNHKRLCIRIKGNHFLYKMVRNIVGTLIYIGKGKLMVEDIPSILQSQDRKMA---GVT 249
Query: 288 APPHGLCLVEVKY 300
AP HGL L V Y
Sbjct: 250 APAHGLFLQTVLY 262
>gi|197303593|ref|ZP_03168631.1| hypothetical protein RUMLAC_02321 [Ruminococcus lactaris ATCC
29176]
gi|197297327|gb|EDY31889.1| tRNA pseudouridine synthase A [Ruminococcus lactaris ATCC 29176]
Length = 264
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/255 (38%), Positives = 133/255 (52%), Gaps = 13/255 (5%)
Query: 51 WRLVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+RLVIAYDGT Y GWQ Q + TIQ I+E ++K + + G+ RTD GVHA G
Sbjct: 16 YRLVIAYDGTAYQGWQRQANTEMTIQGILESC---ISKAAGYAVEVNGSGRTDAGVHARG 72
Query: 110 QVAHFIT-PFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
Q A + + DG +N LLPPDIR+RE FHAR SA K Y Y+I D
Sbjct: 73 QTASVVLHGKAEDGF--FTEKVNKLLPPDIRIREAGLEKNGFHARKSAVGKRYVYQIDTD 130
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
D F R Y YH KL+ M+QAAE G H+F+A+ + + + ++++ V
Sbjct: 131 EKPDVFDRRYTYHFPKKLDIAAMQQAAELLTGTHEFAAYTDKKDE---TSTKRTIYAIMV 187
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
G + ++ EG+GFLY VR + LL++G + V L +DR K A
Sbjct: 188 GGQGGRINIQYEGTGFLYHMVRILTGTLLEVGMGTRRIESVTIALEAKDR---TKVGFLA 244
Query: 289 PPHGLCLVEVKYNEE 303
P GL L EV Y E+
Sbjct: 245 PARGLFLDEVYYKEK 259
>gi|406671714|ref|ZP_11078953.1| tRNA pseudouridine synthase A [Facklamia hominis CCUG 36813]
gi|405580964|gb|EKB55023.1| tRNA pseudouridine synthase A [Facklamia hominis CCUG 36813]
Length = 263
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 146/258 (56%), Gaps = 11/258 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGA--SRTDTGVHA 107
++ + + YDGTRY G+Q Q + P+IQ +E AL+++TK ++ D ++ + RTD+GVHA
Sbjct: 3 RYVIKLQYDGTRYVGYQVQPNGPSIQGALEAALLKITK-QKSDQKIATSCSGRTDSGVHA 61
Query: 108 WGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
GQV HF + +I ALN LL DIRV + +FHAR+ K Y Y+I
Sbjct: 62 LGQVVHFDLELDLPPV-AILNALNALLDKDIRVVAANKVSDQFHARYQVLGKGYRYRIDT 120
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
V++PF+R Y H Y + T +++A E +G HDF++F + + + + +++++ +
Sbjct: 121 GKVLNPFKRFYTTHHPYSYSLTSIQKALEPLLGWHDFTSFCSTKTDKE--DKRRTLYKAE 178
Query: 228 VIE--MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
V E G L + G+GFLY +R +V +QIG P + ++L +DR +
Sbjct: 179 VREDNEGQELIFDFYGNGFLYNMIRIIVGTAMQIGDGLKDPSEMQRLLQVKDRNQAGP-- 236
Query: 286 LSAPPHGLCLVEVKYNEE 303
+APP GL L+ V Y ++
Sbjct: 237 -TAPPQGLYLMHVDYRQD 253
>gi|375091938|ref|ZP_09738226.1| tRNA pseudouridine synthase A [Helcococcus kunzii ATCC 51366]
gi|374562825|gb|EHR34152.1| tRNA pseudouridine synthase A [Helcococcus kunzii ATCC 51366]
Length = 242
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 142/249 (57%), Gaps = 11/249 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L I+YDG+++ G+Q Q T+Q +E+A+ +VT ED+ ++ A RTDTGVHA V
Sbjct: 5 KLEISYDGSKFFGFQIQPDVRTVQGELEEAIKKVTG---EDITIISAGRTDTGVHAKSHV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
++FIT + S L L DI V+ + +F+AR+ AKSK Y Y IYND
Sbjct: 62 SNFITKNDMPAM-SYKYKLRLFLSDDIIVQNSTEVDLDFNARYDAKSKTYRYIIYNDRKF 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P+ Y H +KL+ M +A++ +G+HDFSAF+ + ++ NPV+ + + D+ ++
Sbjct: 121 YPYFNDYKLHIKHKLDIDKMIEASKLLIGRHDFSAFMKLGQDK---NPVRKIDKIDIYKV 177
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
+ LE FL+ Q+R MV LL+ IG+ + V +I K++ + A + P
Sbjct: 178 DKEIYLEFTAKSFLHNQIRIMVGLLIDIGRGFREVNYVNEIF----EKKIKRAAKTYGPQ 233
Query: 292 GLCLVEVKY 300
GL L++VKY
Sbjct: 234 GLYLIDVKY 242
>gi|417927738|ref|ZP_12571126.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|340765612|gb|EGR88138.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
Length = 249
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 143/258 (55%), Gaps = 16/258 (6%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDGT ++G+Q Q+ T+Q +EK L ++ + + + GA RTD GVHA+G
Sbjct: 3 RYKATISYDGTLFSGFQRQSHARTVQEEIEKTLQKLA--SGQPVPIHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + AL+ P DI V +++ +FH R+ SK Y + + N
Sbjct: 61 QVIHFDLPQKRD-LEKLRFALDTQTPADIDVVDLAIVADDFHCRYQKHSKTYEFLVDNGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P RHYA H Y L+ M++A + VG HDF+ F + + N V+++ ++
Sbjct: 120 SKNPMMRHYATHYPYPLDINKMQEAIKDLVGTHDFTGFTAAGTS--VENKVRTITEATLV 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ L G+GFLY+QVRNMV LL+IG +P + + IL +++R+ L+
Sbjct: 178 QDDKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVEQIKVILDSKNRQ------LA 231
Query: 288 APP---HGLCLVEVKYNE 302
P +GL L E++Y +
Sbjct: 232 GPTPAGNGLYLKEIRYED 249
>gi|288904465|ref|YP_003429686.1| tRNA pseudouridylate synthase I [Streptococcus gallolyticus UCN34]
gi|306830500|ref|ZP_07463669.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|306832735|ref|ZP_07465871.1| tRNA pseudouridine synthase A [Streptococcus bovis ATCC 700338]
gi|325977479|ref|YP_004287195.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|336063600|ref|YP_004558459.1| tRNA pseudouridine synthase A [Streptococcus pasteurianus ATCC
43144]
gi|386337006|ref|YP_006033175.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|288731190|emb|CBI12738.1| tRNA pseudouridylate synthase I [Streptococcus gallolyticus UCN34]
gi|304425084|gb|EFM28214.1| tRNA pseudouridine synthase A [Streptococcus bovis ATCC 700338]
gi|304427346|gb|EFM30449.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325177407|emb|CBZ47451.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|334279642|dbj|BAK27216.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|334281800|dbj|BAK29373.1| tRNA pseudouridine synthase A [Streptococcus pasteurianus ATCC
43144]
Length = 249
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 142/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q S ++Q +EK L ++ +++ GA RTD+GVHA+G
Sbjct: 3 RYKATISYDGRLFAGFQRQPSERSVQEELEKTLQKLN--SGNPVKVHGAGRTDSGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + D +E + L+ P DI V ++ EFHAR++ SK Y + +
Sbjct: 61 QVVHFDLPQARD-VEKLRFGLDTQSPEDIDVVKVEQVSDEFHARYNKHSKTYEFLVDAGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P RHYA H Y L+ T M++A + VG HDF+ F + N V+++ R V
Sbjct: 120 PKNPMMRHYATHYPYPLDLTSMQEAIKDLVGTHDFTGF--TASGTSVENKVRTITRATVA 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ G+GFLY+QVRNMV LL+IG +P + +L +++R +LA +
Sbjct: 178 IDDKTGFFVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQIKTVLESKNR-DLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E+ Y+E
Sbjct: 235 AAGNGLYLKEINYDE 249
>gi|422884806|ref|ZP_16931254.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK49]
gi|332359236|gb|EGJ37057.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK49]
Length = 249
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINK--GQPVVIHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D E + AL+ P DI + +FH+R++ SK Y + +
Sbjct: 61 QVLHFDLPEERDE-EKLRFALDTQTPEDIDFIRVEQVSDDFHSRYNKHSKTYEFLVDIGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P RHYA H Y L +L+ +A G HDF+ F D++ ++ R+D
Sbjct: 120 PKNPMMRHYATHYPYPLELSLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRYD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
L G+GFLY+Q+RNMV LL+IG + +P + + +ILA +DR LA +
Sbjct: 180 AER--KFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDR-HLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AGPNGLYLKEIRYEE 249
>gi|69247200|ref|ZP_00604262.1| tRNA pseudouridine synthase [Enterococcus faecium DO]
gi|257878755|ref|ZP_05658408.1| tRNA pseudouridine synthase [Enterococcus faecium 1,230,933]
gi|257881397|ref|ZP_05661050.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,502]
gi|257890614|ref|ZP_05670267.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,410]
gi|293562977|ref|ZP_06677444.1| tRNA pseudouridine synthase A [Enterococcus faecium E1162]
gi|314937639|ref|ZP_07844965.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a04]
gi|314942862|ref|ZP_07849675.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133C]
gi|314948002|ref|ZP_07851406.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0082]
gi|314950919|ref|ZP_07853988.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133A]
gi|314991433|ref|ZP_07856910.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133B]
gi|314995046|ref|ZP_07860166.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a01]
gi|383327446|ref|YP_005353330.1| tRNA pseudouridine synthase A [Enterococcus faecium Aus0004]
gi|389867271|ref|YP_006374694.1| tRNA-pseudouridine synthase I [Enterococcus faecium DO]
gi|415896805|ref|ZP_11550910.1| tRNA pseudouridine synthase A [Enterococcus faecium E4453]
gi|416132123|ref|ZP_11597813.1| tRNA pseudouridine synthase A [Enterococcus faecium E4452]
gi|424797462|ref|ZP_18223046.1| tRNA pseudouridine synthase A [Enterococcus faecium S447]
gi|424828252|ref|ZP_18252988.1| tRNA pseudouridine synthase A [Enterococcus faecium R501]
gi|424854855|ref|ZP_18279198.1| tRNA pseudouridine synthase A [Enterococcus faecium R499]
gi|424869431|ref|ZP_18293135.1| tRNA pseudouridine synthase A [Enterococcus faecium R497]
gi|424950219|ref|ZP_18365390.1| tRNA pseudouridine synthase A [Enterococcus faecium R496]
gi|424954358|ref|ZP_18369260.1| tRNA pseudouridine synthase A [Enterococcus faecium R494]
gi|424958446|ref|ZP_18373092.1| tRNA pseudouridine synthase A [Enterococcus faecium R446]
gi|424959879|ref|ZP_18374436.1| tRNA pseudouridine synthase A [Enterococcus faecium P1986]
gi|424969500|ref|ZP_18383070.1| tRNA pseudouridine synthase A [Enterococcus faecium P1140]
gi|424974094|ref|ZP_18387346.1| tRNA pseudouridine synthase A [Enterococcus faecium P1137]
gi|424981065|ref|ZP_18393818.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV99]
gi|424984579|ref|ZP_18397107.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV69]
gi|424987439|ref|ZP_18399814.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV38]
gi|424990891|ref|ZP_18403081.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV26]
gi|424994548|ref|ZP_18406483.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV168]
gi|424997377|ref|ZP_18409140.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV165]
gi|425001396|ref|ZP_18412915.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV161]
gi|425004004|ref|ZP_18415334.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV102]
gi|425006893|ref|ZP_18418048.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV1]
gi|425011040|ref|ZP_18421964.1| tRNA pseudouridine synthase A [Enterococcus faecium E422]
gi|425014143|ref|ZP_18424838.1| tRNA pseudouridine synthase A [Enterococcus faecium E417]
gi|425017881|ref|ZP_18428362.1| tRNA pseudouridine synthase A [Enterococcus faecium C621]
gi|425020890|ref|ZP_18431177.1| tRNA pseudouridine synthase A [Enterococcus faecium C497]
gi|425030507|ref|ZP_18435680.1| tRNA pseudouridine synthase A [Enterococcus faecium C1904]
gi|425035568|ref|ZP_18440403.1| tRNA pseudouridine synthase A [Enterococcus faecium 514]
gi|425041744|ref|ZP_18446127.1| tRNA pseudouridine synthase A [Enterococcus faecium 511]
gi|425045393|ref|ZP_18449499.1| tRNA pseudouridine synthase A [Enterococcus faecium 510]
gi|425048537|ref|ZP_18452437.1| tRNA pseudouridine synthase A [Enterococcus faecium 509]
gi|425051628|ref|ZP_18455285.1| tRNA pseudouridine synthase A [Enterococcus faecium 506]
gi|430831851|ref|ZP_19449899.1| tRNA pseudouridine synthase A [Enterococcus faecium E0333]
gi|430848250|ref|ZP_19466076.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E1133]
gi|430855719|ref|ZP_19473425.1| tRNA pseudouridine synthase A [Enterococcus faecium E1392]
gi|431749395|ref|ZP_19538136.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E2297]
gi|431755908|ref|ZP_19544550.1| tRNA pseudouridine synthase A [Enterococcus faecium E2883]
gi|431768043|ref|ZP_19556484.1| tRNA pseudouridine synthase A [Enterococcus faecium E1321]
gi|431769452|ref|ZP_19557862.1| tRNA pseudouridine synthase A [Enterococcus faecium E1644]
gi|431773311|ref|ZP_19561637.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E2369]
gi|431779671|ref|ZP_19567863.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E4389]
gi|431782526|ref|ZP_19570659.1| tRNA pseudouridine synthase A [Enterococcus faecium E6012]
gi|431784347|ref|ZP_19572389.1| tRNA pseudouridine synthase A [Enterococcus faecium E6045]
gi|68194965|gb|EAN09433.1| tRNA pseudouridine synthase [Enterococcus faecium DO]
gi|257812983|gb|EEV41741.1| tRNA pseudouridine synthase [Enterococcus faecium 1,230,933]
gi|257817055|gb|EEV44383.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,502]
gi|257826974|gb|EEV53600.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,410]
gi|291605103|gb|EFF34570.1| tRNA pseudouridine synthase A [Enterococcus faecium E1162]
gi|313590772|gb|EFR69617.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a01]
gi|313593913|gb|EFR72758.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133B]
gi|313596928|gb|EFR75773.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133A]
gi|313598334|gb|EFR77179.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133C]
gi|313643016|gb|EFS07596.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a04]
gi|313645600|gb|EFS10180.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0082]
gi|364090913|gb|EHM33441.1| tRNA pseudouridine synthase A [Enterococcus faecium E4453]
gi|364093389|gb|EHM35663.1| tRNA pseudouridine synthase A [Enterococcus faecium E4452]
gi|378937140|gb|AFC62212.1| tRNA pseudouridine synthase A [Enterococcus faecium Aus0004]
gi|388532520|gb|AFK57712.1| tRNA-pseudouridine synthase I [Enterococcus faecium DO]
gi|402921018|gb|EJX41488.1| tRNA pseudouridine synthase A [Enterococcus faecium S447]
gi|402922786|gb|EJX43133.1| tRNA pseudouridine synthase A [Enterococcus faecium R501]
gi|402932184|gb|EJX51716.1| tRNA pseudouridine synthase A [Enterococcus faecium R499]
gi|402933508|gb|EJX52934.1| tRNA pseudouridine synthase A [Enterococcus faecium R496]
gi|402935534|gb|EJX54777.1| tRNA pseudouridine synthase A [Enterococcus faecium R497]
gi|402936992|gb|EJX56136.1| tRNA pseudouridine synthase A [Enterococcus faecium R494]
gi|402940072|gb|EJX58929.1| tRNA pseudouridine synthase A [Enterococcus faecium R446]
gi|402948470|gb|EJX66607.1| tRNA pseudouridine synthase A [Enterococcus faecium P1140]
gi|402949363|gb|EJX67429.1| tRNA pseudouridine synthase A [Enterococcus faecium P1986]
gi|402957441|gb|EJX74832.1| tRNA pseudouridine synthase A [Enterococcus faecium P1137]
gi|402964679|gb|EJX81447.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV99]
gi|402968526|gb|EJX85005.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV69]
gi|402974431|gb|EJX90483.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV38]
gi|402978473|gb|EJX94212.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV26]
gi|402979975|gb|EJX95614.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV168]
gi|402986491|gb|EJY01614.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV165]
gi|402986953|gb|EJY02052.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV161]
gi|402990657|gb|EJY05522.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV102]
gi|402996225|gb|EJY10625.1| tRNA pseudouridine synthase A [Enterococcus faecium ERV1]
gi|402998247|gb|EJY12512.1| tRNA pseudouridine synthase A [Enterococcus faecium E422]
gi|402999493|gb|EJY13680.1| tRNA pseudouridine synthase A [Enterococcus faecium E417]
gi|403002740|gb|EJY16686.1| tRNA pseudouridine synthase A [Enterococcus faecium C1904]
gi|403003399|gb|EJY17299.1| tRNA pseudouridine synthase A [Enterococcus faecium C621]
gi|403008068|gb|EJY21597.1| tRNA pseudouridine synthase A [Enterococcus faecium C497]
gi|403017822|gb|EJY30546.1| tRNA pseudouridine synthase A [Enterococcus faecium 514]
gi|403025525|gb|EJY37603.1| tRNA pseudouridine synthase A [Enterococcus faecium 511]
gi|403027086|gb|EJY38998.1| tRNA pseudouridine synthase A [Enterococcus faecium 510]
gi|403030468|gb|EJY42151.1| tRNA pseudouridine synthase A [Enterococcus faecium 509]
gi|403037248|gb|EJY48548.1| tRNA pseudouridine synthase A [Enterococcus faecium 506]
gi|430480492|gb|ELA57666.1| tRNA pseudouridine synthase A [Enterococcus faecium E0333]
gi|430535593|gb|ELA75993.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E1133]
gi|430546261|gb|ELA86223.1| tRNA pseudouridine synthase A [Enterococcus faecium E1392]
gi|430611524|gb|ELB48605.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E2297]
gi|430616023|gb|ELB52948.1| tRNA pseudouridine synthase A [Enterococcus faecium E2883]
gi|430629772|gb|ELB66160.1| tRNA pseudouridine synthase A [Enterococcus faecium E1321]
gi|430636734|gb|ELB72794.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E2369]
gi|430637027|gb|ELB73071.1| tRNA pseudouridine synthase A [Enterococcus faecium E1644]
gi|430641433|gb|ELB77235.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E4389]
gi|430647163|gb|ELB82611.1| tRNA pseudouridine synthase A [Enterococcus faecium E6012]
gi|430649921|gb|ELB85288.1| tRNA pseudouridine synthase A [Enterococcus faecium E6045]
Length = 248
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 141/254 (55%), Gaps = 10/254 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +IAYDGT + G+Q Q + T+Q VEK L ++ +++ + G+ RTD GVHA G
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMAN--GKEITVFGSGRTDAGVHAIG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P LE + AL+ P DI VR++ +FHAR+ K K Y +++
Sbjct: 61 QVIHFDYP-EERPLERMRFALDTQSPEDIAVRQVEIVSEDFHARYLVKEKTYQFRVDIGK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF--RFD 227
PF+RHYA + Y L+ +++A +G HDF++F + + +++++ + +
Sbjct: 120 PRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSF--CASGSSIEDKIRTIYEAKME 177
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V E L G+GFLY+ +R +V LL+IG +P D +P I+A +DR +
Sbjct: 178 VNETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGP---T 234
Query: 288 APPHGLCLVEVKYN 301
A P GL L EVKY
Sbjct: 235 AHPEGLYLYEVKYE 248
>gi|95928687|ref|ZP_01311433.1| tRNA pseudouridine synthase A [Desulfuromonas acetoxidans DSM 684]
gi|95135032|gb|EAT16685.1| tRNA pseudouridine synthase A [Desulfuromonas acetoxidans DSM 684]
Length = 251
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 133/254 (52%), Gaps = 17/254 (6%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L + YDGT Y GWQ Q + T+Q +E AL +V +R+ + RTD GVHA A
Sbjct: 6 LTVEYDGTSYGGWQVQPNAQTVQEQIESALAQVIG---ASVRVYSSGRTDAGVHAIDMKA 62
Query: 113 HF----ITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
HF + P S + +N LP DI VR++ +FHARF A+ K Y Y++Y
Sbjct: 63 HFDVETLLPLS-----AYREGVNRFLPQDIVVRQVCRVADDFHARFDAQGKWYRYRLYRG 117
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
+ P R ++H L+ M QAA+ VG HDF+AF +++F +
Sbjct: 118 RIRSPLHRLTSWHVAGGLDVEAMTQAADALVGTHDFAAFQA--SGCAAATTQRTLFEVLL 175
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
I+ G L ++V GSGFL VR +V L+++G+ + + +ILA+ R + L+A
Sbjct: 176 IDEGDELIIDVRGSGFLKNMVRIIVGSLVEVGRAKLTAGQLAEILASGQR---CRAGLTA 232
Query: 289 PPHGLCLVEVKYNE 302
P GLCL++V Y +
Sbjct: 233 PAQGLCLMQVWYEK 246
>gi|330718940|ref|ZP_08313540.1| tRNA pseudouridine synthase A [Leuconostoc fallax KCTC 3537]
Length = 250
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 146/254 (57%), Gaps = 8/254 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +++YDG+ + G+Q Q T+Q + K + ++ K +R++GASRTDTGVHA G
Sbjct: 3 RYKAIVSYDGSGFFGFQVQNDVRTVQGELNKVVNQMAKNPATPIRVIGASRTDTGVHALG 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV +F PF+ S+ LN LLP DI +RE+ +FHARF++ K Y Y++
Sbjct: 63 QVINFDLPFNIPA-ASVRKGLNTLLPRDIMIREVEIVNDDFHARFNSHHKRYFYRLSTQD 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+DPF+R YA H + L+ + +A +G+HDF++F ++ ++ + R D+I
Sbjct: 122 FVDPFKRKYAGHFHWPLDIQRIEKALPDLLGEHDFASF--AASGNQTQTTIRRITRADII 179
Query: 230 EMGALLQLE--VEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
++ EG+ FLY Q+R MV +LL+IG P + +++ +DR + A++ +
Sbjct: 180 NKPDEQEIVFIFEGNAFLYNQIRIMVGVLLEIGTGKRPVHDIQRLIEVKDRSQ-ARFTAA 238
Query: 288 APPHGLCLVEVKYN 301
A GL L E+ Y+
Sbjct: 239 AA--GLYLDEISYS 250
>gi|320548017|ref|ZP_08042298.1| tRNA pseudouridine synthase A [Streptococcus equinus ATCC 9812]
gi|320447363|gb|EFW88125.1| tRNA pseudouridine synthase A [Streptococcus equinus ATCC 9812]
Length = 249
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 143/255 (56%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q S ++Q +EK L ++ +++ GA RTD+GVHA+G
Sbjct: 3 RYKATISYDGGLFAGFQRQPSERSVQEELEKTLQKLN--SGTPVKVHGAGRTDSGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + D +E + L+ P DI V ++ +FH+R++ SK Y + +
Sbjct: 61 QVVHFDLPQARD-VEKLRFGLDTQSPEDIDVVKVELVSDDFHSRYNKHSKTYEFLVDAGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFR--FD 227
+P RHYA H Y L+ LM++A + VG HDF+ F + N V+++ R D
Sbjct: 120 PKNPMMRHYATHYPYPLDLALMQEAIKDLVGTHDFTGF--TASGTSVENKVRTITRATVD 177
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ E G+GFLY+QVRNMV LL+IG +P + +L +++R +LA +
Sbjct: 178 IDEKTGFFVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQIKTVLESKNR-DLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E+ Y+E
Sbjct: 235 AAGNGLYLKEIIYDE 249
>gi|254369374|ref|ZP_04985386.1| hypothetical protein FTAG_00346 [Francisella tularensis subsp.
holarctica FSC022]
gi|157122324|gb|EDO66464.1| hypothetical protein FTAG_00346 [Francisella tularensis subsp.
holarctica FSC022]
Length = 258
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 143/253 (56%), Gaps = 15/253 (5%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I Y G Y GWQ Q+ P++Q +EKAL +K+ +++ + A RTDTGVHA Q+
Sbjct: 6 LQIEYFGKNYCGWQRQSHSPSVQEELEKAL---SKIANQNIEVTCAGRTDTGVHATSQIV 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F + +Y L + +N LLP DI++ + F++RF+A ++ Y+Y IYN A
Sbjct: 63 NFYSN-AYRPLSAWQRGVNALLPQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSATSS 121
Query: 173 PFQRHYAYHSVYK---LNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
P +A H +++ L+ M QA EY +G+ DFS+F + Q P +++ + + I
Sbjct: 122 PI---FAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSN--TPFRNIQKAEFI 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G+ + EV G+ FL+ +RN+V LL++G P+ + +L +DR + A+ +A
Sbjct: 177 KQGSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAE---TAK 233
Query: 290 PHGLCLVEVKYNE 302
HGL V V+Y E
Sbjct: 234 AHGLYFVGVEYPE 246
>gi|365926312|ref|ZP_09449075.1| tRNA pseudouridine synthase [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 255
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 144/257 (56%), Gaps = 9/257 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++ + +AYDGT +AG+Q Q + T+Q ++EKA+ +++ +E + + G+ RTD GVHA+G
Sbjct: 4 RYMITLAYDGTNFAGFQSQPNQRTVQDVLEKAVNKMST-AKEFVHIFGSGRTDAGVHAFG 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
Q+ HF + I LN +LP D++V + EFHARF+A K Y Y++
Sbjct: 63 QIVHFDLENDIPA-QGIVNGLNSMLPLDMQVVDAKIVSKEFHARFTAHGKRYMYRVSRGR 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+DPF+R Y H Y LN L+++A +G HD+S+F V + + V++++ V
Sbjct: 122 FVDPFKRFYTGHYKYPLNIELIKEAIPDVIGTHDYSSF--VASGSQTKSHVRTIYDATVR 179
Query: 230 EM--GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E + E G+GFLY QVR MVA LL+IG P ++ +DR E +
Sbjct: 180 ENLENNEIIFEFYGNGFLYNQVRIMVAALLEIGNGKRPVHDFLRLYEVKDRNECRA---T 236
Query: 288 APPHGLCLVEVKYNEEH 304
AP GL L +V Y+ E+
Sbjct: 237 APASGLYLKKVYYDIEN 253
>gi|312622107|ref|YP_004023720.1| tRNA pseudouridine synthase a [Caldicellulosiruptor kronotskyensis
2002]
gi|312202574|gb|ADQ45901.1| tRNA pseudouridine synthase A [Caldicellulosiruptor kronotskyensis
2002]
Length = 244
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 135/248 (54%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I YDGT Y GWQ Q + TIQ +E+A + KL E++ L+G+ RTD GVHA Q A
Sbjct: 6 LTIEYDGTGYFGWQKQPNKKTIQGTIEEA---IKKLTGEEVNLIGSGRTDRGVHALNQKA 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T S + ALN +LP DI +++ +F AR+SA+ K Y Y IYN
Sbjct: 63 NFKTS-SKIPTDKFPLALNSVLPGDISIKDAIEVPLDFSARYSARQKTYKYLIYNKKSRP 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
R+YAY+ Y+L+ M++ EYF+G++DF +F + + ++ V+ +
Sbjct: 122 ALLRNYAYYYPYQLDVDAMQRTCEYFIGEYDFKSFCSADSEAK--TTIRRVYNAYLTFEN 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ + + +GFLY R + +L +G + P +P I+ ++DR + K + PP G
Sbjct: 180 ECIAIYITANGFLYNMARIIAGTILDVGAGKLKPMDIPLIIESKDRTKAGK---TLPPWG 236
Query: 293 LCLVEVKY 300
L LV+V Y
Sbjct: 237 LYLVDVVY 244
>gi|148270348|ref|YP_001244808.1| tRNA pseudouridine synthase ACD [Thermotoga petrophila RKU-1]
gi|166229847|sp|A5IM09.1|TRUA_THEP1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|147735892|gb|ABQ47232.1| tRNA pseudouridine synthase A [Thermotoga petrophila RKU-1]
Length = 245
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 137/246 (55%), Gaps = 10/246 (4%)
Query: 54 VIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAH 113
VI YDG+ + G+Q Q T+Q ++E AL R+ K + + + A RTDTGVHA GQ+
Sbjct: 7 VIEYDGSNFFGYQGQPDVRTVQGVIEDALERIFK---QRIYIQAAGRTDTGVHANGQLIA 63
Query: 114 FITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDP 173
F P E I A+N LP D+ V+E+ FH RF +IYHY I +
Sbjct: 64 FNCPNDRMTTEDIRNAMNANLPDDVYVKEVFEVPVNFHPRFDVTKRIYHYFILTSRQKNV 123
Query: 174 FQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM-G 232
F R Y + Y+L+ MR+A +Y G HDF++F ++R +PV++++R ++ +
Sbjct: 124 FLRKYVWWFPYELDLDAMRKAVKYLEGTHDFTSF-KTGSDER--DPVRTIYRIRILRLKN 180
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
L+ + VEG FL R VRN+VA L+++G + P+ + ++L +DR A +AP HG
Sbjct: 181 DLVLIRVEGRSFLRRMVRNIVAALVKVGLKQWEPEKMKEVLEARDRSAAAG---TAPAHG 237
Query: 293 LCLVEV 298
L +V
Sbjct: 238 LYFYKV 243
>gi|346312869|ref|ZP_08854404.1| tRNA pseudouridine synthase A [Erysipelotrichaceae bacterium
2_2_44A]
gi|345906020|gb|EGX75754.1| tRNA pseudouridine synthase A [Erysipelotrichaceae bacterium
2_2_44A]
Length = 252
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 142/253 (56%), Gaps = 9/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++++++YDGT Y GWQ QT+ +IQ +E A+ K+E +R+ + RTD VHA G
Sbjct: 3 RYKVILSYDGTAYGGWQRQTNTHSIQQEIEAAM---EKIEGSFIRITASGRTDAHVHALG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + E+ ALN LLP DIR++++ +FHARF A SK Y Y I D
Sbjct: 60 QVFHFDSAKDL-APENWRRALNSLLPHDIRIQDVCLVEDDFHARFHAVSKRYDYLITTD- 117
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
V +PF HY L+ M + A F+G HDF++F + + + R + VK++ R D++
Sbjct: 118 VNNPFYYHYMGKDRKVLDVKRMSECARVFLGTHDFTSFTSSKLDPR-KSKVKTITRLDIV 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ ++L EG+GFL VR + L++ GK + V ++L QD K L +Y A
Sbjct: 177 QEEHAVRLVFEGNGFLRYMVRMIAQTLIEAGKHRLDVADVKQMLYGQD-KHLCRY--KAQ 233
Query: 290 PHGLCLVEVKYNE 302
GL LV V Y +
Sbjct: 234 AEGLYLVHVTYAD 246
>gi|358065580|ref|ZP_09152117.1| tRNA pseudouridine synthase A [Clostridium hathewayi WAL-18680]
gi|356696219|gb|EHI57841.1| tRNA pseudouridine synthase A [Clostridium hathewayi WAL-18680]
Length = 242
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/252 (37%), Positives = 135/252 (53%), Gaps = 14/252 (5%)
Query: 53 LVIAYDGTRYAGWQFQ-TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+V+ YDGTRY GWQ Q + TIQ +E + K+ ED+ ++G+ RTD GVHA GQV
Sbjct: 1 MVVQYDGTRYDGWQRQGNTENTIQSKLESV---IGKMTGEDVEIIGSGRTDAGVHATGQV 57
Query: 112 A--HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
A H T + + I +N LP DI V ++ A FH+R +A K+Y Y I
Sbjct: 58 ANVHMDTEKT---PQEIKDYVNQYLPDDIAVTQLEEAPDRFHSRLNATGKVYTYWIETAP 114
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
FQR Y Y KL+ MRQAA+ G HDF +F + + + + V++V +
Sbjct: 115 KCSVFQRKYIYTLGRKLDVEAMRQAAKLLCGTHDFKSFCSNKNMKK--STVRTVKTISIQ 172
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E G+ L++ V G GFLY VR +V L+++G PD + +IL +DR+ +AP
Sbjct: 173 ERGSGLEIHVIGDGFLYNMVRILVGTLIEVGLGKRTPDSMREILEAKDRQAAGA---TAP 229
Query: 290 PHGLCLVEVKYN 301
GL L V Y+
Sbjct: 230 ACGLFLTAVMYD 241
>gi|363900599|ref|ZP_09327104.1| tRNA pseudouridine synthase A [Oribacterium sp. ACB1]
gi|395209079|ref|ZP_10398244.1| tRNA pseudouridine(38-40) synthase [Oribacterium sp. ACB8]
gi|361956473|gb|EHL09791.1| tRNA pseudouridine synthase A [Oribacterium sp. ACB1]
gi|394705680|gb|EJF13206.1| tRNA pseudouridine(38-40) synthase [Oribacterium sp. ACB8]
Length = 253
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 139/255 (54%), Gaps = 8/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++ L +AY+GT Y G+Q Q T+ VE+ L R+ E ++ +GASRTD GVHA G
Sbjct: 3 RFVLKLAYEGTNYHGFQRQEELRTVSGEVEEVLSRLFPGECQNF--IGASRTDQGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
+ F T + E+ ALN LP DIRV +FH RF+A +K Y Y I
Sbjct: 61 NILSFDTEAERNP-ENYERALNSYLPEDIRVLSAWKKTEDFHPRFTAHTKEYRYSIDRAR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLL--NPVKSVFRFD 227
V +P + YH + L+ ++R+ E G+HDF++F N + L + V+ + F
Sbjct: 120 VENPLYQRLYYHYTFPLDLAIIREGIEILKGEHDFTSFANPKAQTLLQGGSAVRCITDFR 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ E G L V+G+GFLY +R + LL++G+ I P + +ILA +DR+ LA +
Sbjct: 180 LEEEGEYLHFTVKGNGFLYHMIRILCGTLLEVGRGRISPSALSEILAGKDRR-LA--GPT 236
Query: 288 APPHGLCLVEVKYNE 302
AP GLCL+ + Y +
Sbjct: 237 APAKGLCLIHLDYGD 251
>gi|402310991|ref|ZP_10829947.1| tRNA pseudouridine(38-40) synthase [Eubacterium sp. AS15]
gi|400366495|gb|EJP19527.1| tRNA pseudouridine(38-40) synthase [Eubacterium sp. AS15]
Length = 245
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 136/247 (55%), Gaps = 10/247 (4%)
Query: 55 IAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHF 114
I+YDGT Y+GWQ Q + +IQ +E A ++ + E++ ++ + RTD GVHA Q+A+F
Sbjct: 8 ISYDGTNYSGWQRQKNAISIQEKIEDA---ISLICNEEINVIASGRTDAGVHALSQIANF 64
Query: 115 ITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPF 174
T D + A+N LP DIR+ +F+ARFSAK K Y Y I N + +PF
Sbjct: 65 NTSSRIDA-KKFAKAINTKLPDDIRILSSKEVDEDFNARFSAKKKTYVYHILNREIKNPF 123
Query: 175 QRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM-GA 233
Y+ H KL+ LM+ + +G HDF++F + N+ N +K+++ D++++
Sbjct: 124 WDRYSMHINRKLDLELMKYNSNMLIGTHDFTSFYTYEENNP-KNTIKTIYSSDIVKIYED 182
Query: 234 LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGL 293
+L + G GFLY VR +V L++IG DI +IL +DR K +A GL
Sbjct: 183 ILTFSITGDGFLYNMVRIIVGTLIEIGLHQKNDDI-SQILMYKDR---IKAGATAKAKGL 238
Query: 294 CLVEVKY 300
L V+Y
Sbjct: 239 FLKNVEY 245
>gi|357636391|ref|ZP_09134266.1| tRNA pseudouridine synthase A [Streptococcus macacae NCTC 11558]
gi|357584845|gb|EHJ52048.1| tRNA pseudouridine synthase A [Streptococcus macacae NCTC 11558]
Length = 249
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 145/256 (56%), Gaps = 12/256 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +++YDG+ ++G+Q Q T+Q +EK L+R+ +++++ GA RTD GVHA+G
Sbjct: 3 RYKAIVSYDGSNFSGFQKQVQVRTVQEEIEKTLLRLNS--GKEVKIHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + L+ DI V ++ +FHAR+ SK Y + +
Sbjct: 61 QVIHFDLPQERD-LEKLRFGLDTQTAEDIDVIKVEQVADDFHARYQKHSKTYEFLVDLGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV- 228
+P RHYA H Y ++ + + A E G HDF+ F + + N V+++ R DV
Sbjct: 120 PKNPLMRHYATHFPYPIDFSAIEAAIEKLQGTHDFTGFTAAGAS--VENKVRTISRADVE 177
Query: 229 --IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
++G L+ G+GFLY+QVRNMV LL+IG +P D + +IL + DR LA
Sbjct: 178 KDDKIGFLI-FTFTGNGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDRN-LA--GP 233
Query: 287 SAPPHGLCLVEVKYNE 302
+A +GL L E+ Y++
Sbjct: 234 TAAGNGLYLKEIIYDD 249
>gi|420143707|ref|ZP_14651204.1| Pseudouridine synthase [Lactococcus garvieae IPLA 31405]
gi|391856578|gb|EIT67118.1| Pseudouridine synthase [Lactococcus garvieae IPLA 31405]
Length = 248
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/252 (36%), Positives = 139/252 (55%), Gaps = 9/252 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++ IAYDGT +AG+Q Q + T+Q +EK L ++ + + L G+ RTD+GVHA
Sbjct: 3 RYMATIAYDGTNFAGFQTQNNQRTVQEEIEKVLTKLNSYQT--VILHGSGRTDSGVHAHA 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
Q HF D E + AL+ P DI E+ +FH RF+ KIY Y + N
Sbjct: 61 QRIHFDLQGQRDE-EHLRFALDTQTPSDIAFHEVIQVEEDFHVRFNKHEKIYEYFLENSK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
V PF R Y H YKL+ LMRQA E VG HDF+ F + + V+++ + +++
Sbjct: 120 VRSPFYRMYRAHFRYKLDEDLMRQALEDLVGTHDFTGF--TASGATVEDKVRTITQAELV 177
Query: 230 EM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
++ + G+GFLY+QVRNM+ +++IG +P + KIL +++R +LA +A
Sbjct: 178 KLDDENYKFIFRGNGFLYKQVRNMMGTVIKIGNGRMPVSQIKKILESKNR-DLA--GPTA 234
Query: 289 PPHGLCLVEVKY 300
P GL L EV Y
Sbjct: 235 APEGLYLKEVIY 246
>gi|295692190|ref|YP_003600800.1| tRNA pseudouridine synthase a [Lactobacillus crispatus ST1]
gi|295030296|emb|CBL49775.1| tRNA pseudouridine synthase A [Lactobacillus crispatus ST1]
Length = 262
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 144/255 (56%), Gaps = 9/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ +AYDG + G+Q Q T+Q +E AL ++TK +R + + G+ RTD GVHA G
Sbjct: 4 RYKMTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGQR--VIVQGSGRTDAGVHAVG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + A+N ++P DI + FHAR+S K K Y Y++ D
Sbjct: 62 QVIHFDYPGKTIPANRMILAMNSMMPTDIIFDDCQIVDENFHARYSIKGKWYRYRVSLDH 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
++PF+R Y H Y L+ M+ AA+ +GKHDF++F ++ N V++++ ++
Sbjct: 122 FVNPFKRFYTGHFPYPLDIEKMQVAAQDLLGKHDFTSF--AASGGQIENKVRTIYYVNIT 179
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E + + GSGFLY VR MVA LL+IG + P + +++A +DR+E+ + +
Sbjct: 180 KDEKENEVIFDFIGSGFLYNMVRIMVAALLEIGNDRRPIHDLQRVIAAKDRQEVRQ---T 236
Query: 288 APPHGLCLVEVKYNE 302
A GL L V Y+E
Sbjct: 237 AHASGLYLYHVFYDE 251
>gi|407797922|ref|ZP_11144837.1| tRNA pseudouridine synthase A [Salimicrobium sp. MJ3]
gi|407017685|gb|EKE30442.1| tRNA pseudouridine synthase A [Salimicrobium sp. MJ3]
Length = 246
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 137/249 (55%), Gaps = 7/249 (2%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ + YDGT Y+G+Q Q + T+Q +EKAL + K E +R++ + RTD GVHA GQV
Sbjct: 5 KCTVEYDGTGYSGFQIQPNGKTVQEELEKALRTMHK--GEHVRIIASGRTDAGVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF T + + A L LLP DI V++ FHA+F K K Y Y +
Sbjct: 63 FHFDTSLAVPENRWVRA-LETLLPSDIYVKQAEYVEESFHAQFDVKEKEYRYYVRPVRSR 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R YH L+ M++A + F+G HDF+AF + + + N +++V R ++
Sbjct: 122 DVFRRRTVYHHPRNLDIEKMQEAVKQFLGTHDFTAFCSAKTTLK-GNKIRTVSRAELNVT 180
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G L+ V G+GFLY VR M+ LL+IG+ D +P+ LA +R+ LA + P H
Sbjct: 181 GEELEFIVRGNGFLYNMVRIMMGTLLEIGEGKKEIDTIPRALAEHNRR-LA--GFTTPGH 237
Query: 292 GLCLVEVKY 300
GL L EV Y
Sbjct: 238 GLFLWEVSY 246
>gi|291279383|ref|YP_003496218.1| tRNA pseudouridine synthase A [Deferribacter desulfuricans SSM1]
gi|290754085|dbj|BAI80462.1| tRNA pseudouridine synthase A [Deferribacter desulfuricans SSM1]
Length = 244
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 140/252 (55%), Gaps = 9/252 (3%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+K + V+ YDGT + GWQ Q T+Q ++E AL +K+ + + +VG+ RTDTGVHA
Sbjct: 2 YKKKCVVEYDGTYFFGWQRQKDLRTVQGVIEAAL---SKIYKSSINIVGSGRTDTGVHAV 58
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF++ Y S+ LN +LP D+ ++ + FHA+ SA SK Y YKIYN
Sbjct: 59 GQVFHFVSE-RYLENRSVLLGLNSVLPEDVVIKHVEDVDLSFHAQKSAISKTYIYKIYNY 117
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
+ R+ A+ ++ L+ + ++F G+ DFSA + NPV+++
Sbjct: 118 QIRSALFRNRAWWIRDNIDVDLLNEYLKFFKGEKDFSAM--CLKRSVPENPVRTINYIFA 175
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
G + +E+ +GFL+ VRN+V ++ + + P+ + +IL ++DRK + +A
Sbjct: 176 KRDGDFINIEINANGFLHNMVRNIVGTVIDLYSDNSSPEKIEEILKSKDRKNAGR---TA 232
Query: 289 PPHGLCLVEVKY 300
PP GL L EV Y
Sbjct: 233 PPQGLYLKEVFY 244
>gi|422850155|ref|ZP_16896831.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK115]
gi|325689043|gb|EGD31051.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK115]
Length = 249
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINK--GQPVVIHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D E + AL+ P DI + +FH+R++ SK Y + +
Sbjct: 61 QVLHFDLPEERDE-EKLRFALDTQTPEDIDFISVEQVSDDFHSRYNKHSKTYEFLVDIGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P RHYA H Y L +L+ +A G HDF+ F D++ ++ R+D
Sbjct: 120 PKNPMMRHYATHYPYPLELSLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRYD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
L G+GFLY+Q+RNMV LL+IG + +P + + +ILA +DR LA +
Sbjct: 180 AEH--NFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDR-HLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AGPNGLYLKEIRYEE 249
>gi|352518424|ref|YP_004887741.1| tRNA pseudouridine synthase TruA [Tetragenococcus halophilus NBRC
12172]
gi|348602531|dbj|BAK95577.1| tRNA pseudouridine synthase TruA [Tetragenococcus halophilus NBRC
12172]
Length = 247
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 143/256 (55%), Gaps = 17/256 (6%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +IAYDGT ++G+Q Q + T+Q +EK L +K+ + +++ G+ RTD GVHA G
Sbjct: 3 RYKAIIAYDGTNFSGFQSQINGRTVQDELEKTL---SKIANQKIKINGSGRTDAGVHALG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV F P LE + AL+ DI V++I FH+R+ AK K Y +++
Sbjct: 60 QVIDFAWPVKRP-LEKLRFALDTQTSADIAVKQIELVEDSFHSRYLAKEKTYEFRVDIGK 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF--RFD 227
PF+R Y+ + Y+L+ +R+A F+G HDF++F +++ + N ++++ + +
Sbjct: 119 ARSPFRRFYSSYYRYELDLGRIRRALPDFLGSHDFTSFCSIK--SEVNNKKRTIYEAKME 176
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V + L G GFLY VR MV LL+IG I D +P+I+A DR +L+
Sbjct: 177 VNDTCDELLFTFRGDGFLYNMVRIMVGTLLKIGNGRISEDAIPQIIAACDR------SLA 230
Query: 288 AP---PHGLCLVEVKY 300
P P GL L EVKY
Sbjct: 231 GPTAHPEGLYLKEVKY 246
>gi|158320711|ref|YP_001513218.1| tRNA pseudouridine synthase A [Alkaliphilus oremlandii OhILAs]
gi|158140910|gb|ABW19222.1| tRNA pseudouridine synthase A [Alkaliphilus oremlandii OhILAs]
Length = 245
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 135/250 (54%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+LVI YDG+RY GWQ + S TIQ +EK L +T + ++G+ RTD GVHA Q
Sbjct: 5 KLVIEYDGSRYDGWQRLKDSEQTIQGKIEKVLNEMTG---SSVEIIGSGRTDAGVHAKNQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
+A+F T S + IH +N LP DI V+E+ FH+R++A+ K Y Y ++N +
Sbjct: 62 IANFKTKSSM-SIRDIHNYMNHYLPQDIVVKEVKEVSDRFHSRYNAQKKKYTYYVWNHRI 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
FQR Y+Y+ L+ M AA +G HDF F +V++ + + V+++ +++
Sbjct: 121 PSAFQRKYSYYFPETLDLQRMEAAANQLLGTHDFIGFSSVKKAKK--STVRTIEEITIVQ 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+L+ G GFL+ +R ++ LL+IG + +I ++ R K +AP
Sbjct: 179 NNHMLEFSFIGDGFLHNMIRILMGTLLEIGTREKDISCIDEIFTSKTRAMAGK---TAPA 235
Query: 291 HGLCLVEVKY 300
GL L EV Y
Sbjct: 236 QGLFLEEVYY 245
>gi|374603290|ref|ZP_09676272.1| tRNA pseudouridine synthase A [Paenibacillus dendritiformis C454]
gi|374391159|gb|EHQ62499.1| tRNA pseudouridine synthase A [Paenibacillus dendritiformis C454]
Length = 273
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/274 (36%), Positives = 153/274 (55%), Gaps = 18/274 (6%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
++++YDGT Y+G+Q Q TIQ +E+A+ +TK E + + RTD GVHA GQV
Sbjct: 6 MLLSYDGTAYSGYQTQPGRDTIQGRIEEAIHMLTK---EHAAVTASGRTDAGVHALGQVV 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T S +E A+N LP DI +R+ A FHARFSAK K Y Y I + D
Sbjct: 63 NFATESSIP-IERWCPAMNSRLPDDIVIRDAWEAPESFHARFSAKRKTYRYSILAERTRD 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI--- 229
F+R+ +H L+ MRQA ++FVG+HDF++ V ++ +L N V++++ +
Sbjct: 122 VFRRNVEFHHPAPLDIEAMRQALQHFVGEHDFTS-VASPKSPKLTN-VRTIYEARLEHEP 179
Query: 230 ----EMG-ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
E G + + V G+GFLY VR + L+ +G+ PD + ILA ++R+
Sbjct: 180 NANHEPGRGRIHVFVTGNGFLYNMVRIIAGTLIWVGEGKFSPDDIVPILAAKNRESAGPT 239
Query: 285 ALSAPPHGLCLVEVKYNEEHLRLPAACPLSSFGR 318
A+ PHGL L V+Y+ E R+ A P+ + G+
Sbjct: 240 AV---PHGLTLWSVEYDGED-RMDQAVPVLAEGK 269
>gi|339449279|ref|ZP_08652835.1| tRNA pseudouridine synthase A [Lactobacillus fructivorans KCTC
3543]
Length = 268
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 145/275 (52%), Gaps = 19/275 (6%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ AYDGT++AG+Q Q T++ + + ++ + + + G+ RTD GVHA G
Sbjct: 4 RYKITFAYDGTKFAGFQKQPKQRTVEGTLTHIVNKMAQKSGRQIAIYGSGRTDAGVHALG 63
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVAHF P+ ES+ LN + P DI + ++ +FHAR+ K Y Y++
Sbjct: 64 QVAHFDFPYEL-SEESMLKGLNSMCPLDIEILKVQRVNDDFHARYDVTGKKYLYRLDLGQ 122
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRND----RLLNPVKSVFR 225
DPF+R+Y H + ++ ++ A + +VG HDFS+FV D R + VK+ +
Sbjct: 123 FTDPFKRNYTAHWRFPVDFGRIKLAIQDYVGTHDFSSFVASGAKDGSRVRTVFSVKANWN 182
Query: 226 FDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
D E +QLE G GF+Y Q+R MV +L++IG+ P + +++ +DR E
Sbjct: 183 KDANE----IQLEFYGDGFMYNQIRIMVGVLMEIGQGKRPIHDIKRLIKVRDRNEA---R 235
Query: 286 LSAPPHGLCLVEVKYNEEHLRLPAACPLSSFGRHH 320
L+ P +GL L V Y P P S +HH
Sbjct: 236 LTMPANGLYLKRVFY-------PGDDPKHSVRKHH 263
>gi|414158092|ref|ZP_11414386.1| tRNA pseudouridine synthase A [Streptococcus sp. F0441]
gi|410870637|gb|EKS18594.1| tRNA pseudouridine synthase A [Streptococcus sp. F0441]
Length = 249
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 137/255 (53%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GHAITVHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + D E + AL+ P DI V + +FH R++ SK Y + +
Sbjct: 61 QVIHFDLLYQMDE-EKLRFALDTQSPEDIDVISMELVADDFHCRYAKHSKTYEFIVDRGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M+ A + G HDF+ F D++ ++ D
Sbjct: 120 PKNPMRRHYATHFPYPLDVERMQMAIKKLEGTHDFTGFTASGTSVEDKVRTITEANLTVD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 180 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|116873964|ref|YP_850745.1| tRNA pseudouridine synthase A [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|123466636|sp|A0ALT4.1|TRUA_LISW6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|116742842|emb|CAK21966.1| tRNA pseudouridine synthase A [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 248
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 142/253 (56%), Gaps = 8/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG+ + G+Q Q + T+Q +EKAL ++ K +++R+ + RTDTGVHA G
Sbjct: 3 RYKAIISYDGSGFYGYQIQPNARTVQAEIEKALKKMHK--GKNVRITASGRTDTGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + + AL + P DI + A +FHARF K Y Y +
Sbjct: 61 QVIHFDSDLDITA-DKFQKALQVMTPFDISFLTVDEAPADFHARFGTVGKEYRYIVKRTK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ DPF R++A H Y+L+ M+ A+E +G+HDF++F + R +R + V++++ D
Sbjct: 120 IFDPFSRNFALHYPYELDIAKMKLASECLIGEHDFTSFCSA-RTER-DSKVRTLYSIDFY 177
Query: 230 EMG-ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E L + +G+GFLY VR + LL G+ I + + + L +DR++L + +A
Sbjct: 178 EEDEETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISSEDITEALLARDRQKLI--SKTA 235
Query: 289 PPHGLCLVEVKYN 301
PP GL L V Y
Sbjct: 236 PPQGLYLWRVDYE 248
>gi|407717698|ref|YP_006795103.1| tRNA pseudouridine synthase A [Leuconostoc carnosum JB16]
gi|407241454|gb|AFT81104.1| tRNA pseudouridine synthase A [Leuconostoc carnosum JB16]
Length = 255
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 142/257 (55%), Gaps = 9/257 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTS-----PPTIQCIVEKALIRVTKLEREDLRLVGASRTDTG 104
+++ ++YDG+ + G+Q QT T+Q + KA+ ++ K E +++VGASRTDTG
Sbjct: 3 RYKATVSYDGSDFFGFQVQTKHGVECQRTVQGELNKAVNQMAKNPIEPIKVVGASRTDTG 62
Query: 105 VHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYK 164
VHA+GQV HF PF+ + + LN LLP DI ++ + FHARF+ +K Y Y+
Sbjct: 63 VHAFGQVVHFDLPFNIHEI-GVRKGLNTLLPRDILIQHVEKVSDNFHARFNTHAKRYIYR 121
Query: 165 IYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF 224
+ DPF+R Y H ++L+T ++ A +G+HDF++F +
Sbjct: 122 VSTQDYTDPFKRKYTGHFQWQLDTKRIQLALPDLIGEHDFASFAASGNQTATTIRTITRA 181
Query: 225 RFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
++ E L EG+ FLY Q+R MV +LL+IG + +++A +DR E A++
Sbjct: 182 DVEIKESDQELVFTFEGNAFLYNQIRIMVGVLLEIGNGRRDIHDIVRLIAVKDR-EQARF 240
Query: 285 ALSAPPHGLCLVEVKYN 301
+AP GL L E+ Y+
Sbjct: 241 --TAPASGLYLDEIYYD 255
>gi|197120829|ref|YP_002132780.1| tRNA pseudouridine synthase A [Anaeromyxobacter sp. K]
gi|196170678|gb|ACG71651.1| tRNA pseudouridine synthase A [Anaeromyxobacter sp. K]
Length = 245
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/251 (39%), Positives = 136/251 (54%), Gaps = 12/251 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+LV+ YDGT Y GWQ Q + P+IQ VE+AL + K R R+ A RTD GVHA GQV
Sbjct: 5 KLVLEYDGTAYVGWQVQPNGPSIQAEVERALATLHKAPR---RVTAAGRTDAGVHARGQV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
F +++ +N LLPPD+ VR S F AR SA+ K Y Y I N
Sbjct: 62 VSFPEDRPLP-VKAYVMGMNALLPPDVAVRAASLEPDGFDARRSARGKRYRYVIENLPTR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRND-RLLNPVKSVFRFDVI- 229
P R A+ + L +R+AA + VG+HDF+AF Q +D + V+ V R DV+
Sbjct: 121 APLTRLQAWQHFHPLELASVREAAAHLVGRHDFAAF---QASDCACEHAVREVRRLDVLG 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E G +++ +E + F+ VRN+V L+++G+ P + +LA DR E +AP
Sbjct: 178 EAGGRIEVVIEATAFVKHMVRNIVGTLVEVGRGRRAPGSMLDLLARGDRTEAGP---TAP 234
Query: 290 PHGLCLVEVKY 300
P GL L EV Y
Sbjct: 235 PQGLFLEEVFY 245
>gi|429766946|ref|ZP_19299177.1| tRNA pseudouridine synthase A, partial [Clostridium celatum DSM
1785]
gi|429182374|gb|EKY23480.1| tRNA pseudouridine synthase A, partial [Clostridium celatum DSM
1785]
Length = 262
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 136/253 (53%), Gaps = 12/253 (4%)
Query: 52 RLVIAYDGTRYAGWQFQT----SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHA 107
R+ I YDG+RY GWQ Q S TIQ +E L +K+ E+++++G RTDTGVHA
Sbjct: 18 RMTIQYDGSRYKGWQKQNIKGQSVSTIQGKIENVL---SKMTGEEIQVIGCGRTDTGVHA 74
Query: 108 WGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
A+F T S L + LN LP DI V + A FH+R + SK Y Y I N
Sbjct: 75 DKYTANFKTN-SNKTLSDMSKYLNEFLPDDIVVTSLREASDRFHSRLNVISKTYVYTIDN 133
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
+ + F + YAYH KL+ M++A++ +G HDF +F V+ + ++++ +
Sbjct: 134 NKFANVFLKKYAYHVEGKLDIEKMKEASKLLIGTHDFRSFSGVKAKHN-KSTIRTINYIN 192
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ E ++++E G+GFL VR + L+++ K I + +L + R ++A+
Sbjct: 193 IYEDNNIIKIEYNGNGFLLNMVRILSGTLIKVAKGEIDIIDIKNLLEAKSRSDIAE---K 249
Query: 288 APPHGLCLVEVKY 300
AP GLC+ EV Y
Sbjct: 250 APAKGLCMKEVHY 262
>gi|385813134|ref|YP_005849527.1| tRNA pseudouridine synthase A [Lactobacillus helveticus H10]
gi|323465853|gb|ADX69540.1| tRNA pseudouridine synthase A [Lactobacillus helveticus H10]
Length = 262
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 143/255 (56%), Gaps = 9/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ +AYDG + G+Q Q T+Q +E AL +++K +R + + G+ RTD GVHA G
Sbjct: 4 RYKMTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMSKGKR--IIVQGSGRTDAGVHAIG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + ALN ++P DI FHAR+S K K Y Y++ D
Sbjct: 62 QVIHFDYPGKTIPANRMILALNSMMPTDIIFNNCEIVNENFHARYSIKGKWYRYRVSLDH 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
++PF+R Y H Y L+ M++AA+ +GKHDF++F ++ + V++++ ++
Sbjct: 122 FVNPFKRFYTGHFSYALDVGKMQEAAKDLLGKHDFTSF--AASGGQIEDKVRTIYYVNIA 179
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E + + GSGFLY VR MVA LL+IG P + +++A +DR+E+ + +
Sbjct: 180 KDEKENEIVFDFIGSGFLYNMVRIMVAALLEIGNGRRPVHDLKRVIAAKDRQEVRQ---T 236
Query: 288 APPHGLCLVEVKYNE 302
A GL L V Y+E
Sbjct: 237 AQASGLYLYHVFYDE 251
>gi|256849152|ref|ZP_05554585.1| tRNA pseudouridine synthase A [Lactobacillus crispatus MV-1A-US]
gi|262047168|ref|ZP_06020126.1| tRNA pseudouridine synthase A [Lactobacillus crispatus MV-3A-US]
gi|256713928|gb|EEU28916.1| tRNA pseudouridine synthase A [Lactobacillus crispatus MV-1A-US]
gi|260572413|gb|EEX28975.1| tRNA pseudouridine synthase A [Lactobacillus crispatus MV-3A-US]
Length = 262
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 143/255 (56%), Gaps = 9/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ +AYDG + G+Q Q T+Q +E AL ++TK +R + + G+ RTD GVHA G
Sbjct: 4 RYKMTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGKR--VIVQGSGRTDAGVHAVG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + A+N ++P DI +FHAR+S K K Y Y++ D
Sbjct: 62 QVIHFDYPGKTIPANRMILAMNSMMPTDIIFNNCQIVNDDFHARYSIKGKWYRYRVSLDH 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
++PF+R Y H Y L+ M+ AA+ +GKHDF++F R+ + V++++ +
Sbjct: 122 FVNPFKRFYTGHFPYPLDIEKMQIAAQDLLGKHDFTSF--AASGGRIEDKVRTIYYVKIT 179
Query: 230 E--MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E + + GSGFLY VR MVA LL+IG + P + +++A +DR+E+ + +
Sbjct: 180 EDKKDNEVIFDFIGSGFLYNMVRIMVAALLEIGNDRRPVHDLQRVIAAKDRQEVRQ---T 236
Query: 288 APPHGLCLVEVKYNE 302
A GL L V Y+E
Sbjct: 237 AHASGLYLYHVFYDE 251
>gi|306825673|ref|ZP_07459012.1| tRNA pseudouridine synthase A [Streptococcus sp. oral taxon 071
str. 73H25AP]
gi|304432034|gb|EFM35011.1| tRNA pseudouridine synthase A [Streptococcus sp. oral taxon 071
str. 73H25AP]
Length = 261
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 137/255 (53%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + GA RTD+GVHA G
Sbjct: 15 RYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNK--GHAITVHGAGRTDSGVHALG 72
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + D E + AL+ P DI V + +FH R++ SK Y + +
Sbjct: 73 QVIHFDLLYQMDE-EKLRFALDTQSPEDIDVISMELVADDFHCRYAKHSKTYEFIVDRGR 131
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P +RHYA H Y L+ M+ A + G HDF+ F D++ ++ D
Sbjct: 132 PKNPMRRHYATHFPYPLDVERMQMAIKKLEGTHDFTGFTASGTSVEDKVRTITEANLTVD 191
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G L G+GFLY+Q+RNMV LL+IG +P + + IL +DR +LA +
Sbjct: 192 --ETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDR-QLA--GPT 246
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 247 AAPNGLYLKEIRYEE 261
>gi|335356520|ref|ZP_08548390.1| tRNA pseudouridine synthase A [Lactobacillus animalis KCTC 3501]
Length = 250
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 136/253 (53%), Gaps = 9/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++ + +AYDGT +AG+Q Q T+Q ++EKAL +++K + + + + G+ RTD+GVHA G
Sbjct: 4 RYMITLAYDGTNFAGFQAQPKQRTVQSVLEKALNKMSKFD-DYITIYGSGRTDSGVHALG 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P E + LN +LP D V + +FHARF+ K Y Y++
Sbjct: 63 QVIHFDFPHDI-SPEGMLKGLNSMLPLDCEVIDCKIVSDDFHARFTTHGKRYMYRVSRSW 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
DPF+R Y H Y L+ + +A VG HDFS+FV Q D + ++ R D
Sbjct: 122 FTDPFKRFYTGHYKYPLDIKRIEEAMPDVVGTHDFSSFVASGSQTKDHVRTIYEATVRED 181
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ + E G+GFLY QVR MVA LL+IG P ++ +DR E + +
Sbjct: 182 --KENNEVIFEFYGNGFLYNQVRIMVATLLEIGNGKRPVHDFLRLYEVKDRNECRE---T 236
Query: 288 APPHGLCLVEVKY 300
AP GL L +V Y
Sbjct: 237 APASGLYLKKVYY 249
>gi|3915176|sp|Q45557.1|TRUA_BACSV RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|289265|gb|AAA73188.1| unknown [Bacillus sp. KSM-64]
Length = 244
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 129/231 (55%), Gaps = 7/231 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L+I YDG RY GWQ TIQ +E L +++ + ++G+ RTD GVHA G
Sbjct: 4 YKLMIQYDGGRYKGWQRLGNGENTIQGKIETVL---SEMVGRKIEIIGSGRTDAGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+ ++ ++ + LN LP DI V E++ FH+R++AK K Y YKI+N+
Sbjct: 61 QVANVKLSENFT-VKEVKEYLNRYLPHDISVTEVTLVPDRFHSRYNAKDKTYLYKIWNED 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
PF R Y+ H KL+ M +A++ FVG+HDF+AF N + + +++ +
Sbjct: 120 YTHPFMRKYSLHIEKKLHIDNMVKASQLFVGEHDFTAFSNAKSKKK--TNTRTIHSITIQ 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKE 280
+ + + V G GFLY VR MV L+++G P+ V IL ++DR +
Sbjct: 178 DNQGFIDIRVCGDGFLYNMVRKMVGTLIEVGLGEKEPEQVLTILESKDRSQ 228
>gi|333398834|ref|ZP_08480647.1| tRNA pseudouridine synthase A [Leuconostoc gelidum KCTC 3527]
Length = 266
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 141/257 (54%), Gaps = 9/257 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPP-----TIQCIVEKALIRVTKLEREDLRLVGASRTDTG 104
+++ +++YDG+ + G+Q QT T+Q + KA+ ++ K +++VGASRTDTG
Sbjct: 14 RYKAIVSYDGSGFFGFQVQTKDGVERQRTVQGELNKAVNQMAKNPTHAIKVVGASRTDTG 73
Query: 105 VHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYK 164
VHA+GQV HF PF + + + LN LLP DI +R + +FHARF+ +K Y Y+
Sbjct: 74 VHAFGQVVHFDLPFDINVI-GVRKGLNTLLPKDIIIRSVDQVANDFHARFNTHAKRYVYR 132
Query: 165 IYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF 224
+ DPF+R Y H +KL+ ++ A +G+HDF++F +
Sbjct: 133 VSTQDFTDPFKRFYTGHFHWKLDVERIKIALPDLLGEHDFASFAASGNQTITTIRTITRA 192
Query: 225 RFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
V L L EG+ FLY Q+R MV +LL+IG + +++A +DR E A++
Sbjct: 193 DIKVNNDDQELILTFEGNAFLYNQIRIMVGVLLEIGNGRRDVHDIIRLIAVKDR-EQARF 251
Query: 285 ALSAPPHGLCLVEVKYN 301
+AP GL L E+ Y+
Sbjct: 252 --TAPASGLYLDEIYYD 266
>gi|210617714|ref|ZP_03291708.1| hypothetical protein CLONEX_03932 [Clostridium nexile DSM 1787]
gi|210149156|gb|EEA80165.1| hypothetical protein CLONEX_03932 [Clostridium nexile DSM 1787]
Length = 249
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/260 (38%), Positives = 141/260 (54%), Gaps = 18/260 (6%)
Query: 51 WRLVIAYDGTRYAGWQFQT-SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++I YDG+RY GWQ Q + TIQ I+E+ + ++ E + G+ RTD GVHA G
Sbjct: 4 YKMIIVYDGSRYKGWQRQNLTNLTIQTILERTVEQIVGYPVE---IDGSGRTDAGVHANG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+ D ES LN LLP DI V+E+ FH+R+SAK+K Y Y I D
Sbjct: 61 QVANMKVSGLLD--ESFVGELNCLLPEDICVKEMELVPGSFHSRYSAKAKKYKYCI--DT 116
Query: 170 VMDP--FQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
P F R Y YH +L+ M++AAEY G HDFSAF + N + V++++
Sbjct: 117 RKKPCVFTRRYTYHFTKELHLDDMKKAAEYLKGTHDFSAFTD---NKDEKSKVRTIYEIK 173
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIG-KEAIPPDIVPKILATQDRKELAKYAL 286
+++ L+ E G+GFLY VR + LL++G E DI K+ Q +EL +
Sbjct: 174 IVKKWTRLEFEFYGTGFLYHMVRILTGTLLEVGCAEKSIEDI--KMALEQKERELTGFL- 230
Query: 287 SAPPHGLCLVEVKYNEEHLR 306
AP GL L +V Y E R
Sbjct: 231 -APARGLFLEKVYYQEGEER 249
>gi|291562296|emb|CBL41112.1| pseudouridylate synthase I [butyrate-producing bacterium SS3/4]
Length = 344
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/270 (35%), Positives = 147/270 (54%), Gaps = 17/270 (6%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L +AYDGT Y GWQ Q + TI+ ++ KAL + L +E + ++GASRTD+GVHA G V
Sbjct: 5 KLTVAYDGTAYKGWQLQPNGVTIEEMLNKAL---SDLLKEPVCVIGASRTDSGVHARGNV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T G + A+N LP DIRV E ++H R K Y Y+I N +
Sbjct: 62 AVFDTESRIPG-DKFCYAVNRGLPEDIRVVESEEVPLDWHPRKQNCVKTYEYQILNCKIE 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P +R YA+ Y LN M +AA+Y +G+HDF +F N + V++++ +V +
Sbjct: 121 IPTRRLYAHFCYYPLNVEKMNEAAKYLIGEHDFISFCAA--NHQAEETVRTIYGAEVKKN 178
Query: 232 GA-LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
++ + + GSGFLY VR + LL++G P+ V ++L ++RKE + +AP
Sbjct: 179 DEDIVTIRLCGSGFLYNMVRIIAGTLLKVGTGEWEPEHVKEVLEARNRKEAGQ---TAPA 235
Query: 291 HGLCLVEVKYNEEHLRLPAACPLSSFGRHH 320
GL LV ++Y E P+ GR+
Sbjct: 236 KGLTLVGIEYERE-------IPMEIIGRNE 258
>gi|116749101|ref|YP_845788.1| tRNA pseudouridine synthase A [Syntrophobacter fumaroxidans MPOB]
gi|116698165|gb|ABK17353.1| tRNA pseudouridine synthase A [Syntrophobacter fumaroxidans MPOB]
Length = 261
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 137/263 (52%), Gaps = 26/263 (9%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L++ YDG+ Y GWQ Q TIQ ++E R+ + + + + + RTD GVHA G
Sbjct: 11 NFKLILEYDGSHYHGWQRQLGVLTIQEVLES---RLEVMLQSPVGVRASGRTDAGVHACG 67
Query: 110 QVAHF-----ITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYK 164
QV +F + P E I +N LLPPDI V A FHARFSA K Y Y
Sbjct: 68 QVVNFHVHTRLRP------EEILRGINSLLPPDIVVLHAEVAAESFHARFSATGKTYEYH 121
Query: 165 IYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV----NVQRNDRLLNPV 220
I N + QR YA+H L MR+ +G+HDF+AF+ V+ +R +
Sbjct: 122 ILNRPIRSALQRRYAWHVPQPLEPQRMRECLGSLLGRHDFAAFMASGSKVKSTERTIRRA 181
Query: 221 KSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKE 280
D +E G ++L E +GFL VRN+V ++++G+ P+ IL+++DRK
Sbjct: 182 D----LDCLENGE-MRLVFEANGFLRHMVRNLVGTIVEVGRGVRAPEEFLDILSSRDRK- 235
Query: 281 LAKYALSAPPHGLCLVEVKYNEE 303
+ ++AP HGL L V Y E+
Sbjct: 236 --RAGMTAPAHGLFLTAVHYTED 256
>gi|240144416|ref|ZP_04743017.1| tRNA pseudouridine synthase A [Roseburia intestinalis L1-82]
gi|257203524|gb|EEV01809.1| tRNA pseudouridine synthase A [Roseburia intestinalis L1-82]
Length = 294
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 137/252 (54%), Gaps = 9/252 (3%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+ ++++AYDGT Y GWQ Q + TI+ ++ K L + L E + + GASRTD+GVH+
Sbjct: 48 MRVKMIVAYDGTNYKGWQVQPNGITIEEVLNKNL---SNLLGEQIVVSGASRTDSGVHSL 104
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
G +A F T + I ALN LP DI V+ +H R+ K Y Y+I N
Sbjct: 105 GNIAVFDTNTRMPA-DKIAFALNQRLPEDIVVQGSCEVEDGWHPRYQNSRKTYEYRILNR 163
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
P +R Y Y L+ M++AA Y G+HDF +F + ++ V++++ DV
Sbjct: 164 TFRMPTRRLDTYFYHYPLDVEKMKKAASYLEGEHDFKSFCAI--GAQVKTTVRTIYACDV 221
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ G ++ + V G+GFLY VR + L+Q+G AI P+ V ILA +DR +A
Sbjct: 222 EKEGDIITIRVTGNGFLYNMVRIIAGTLVQVGGGAIKPEAVKGILAKKDRSAAGP---TA 278
Query: 289 PPHGLCLVEVKY 300
P HGL ++ +++
Sbjct: 279 PAHGLTMMGIEF 290
>gi|125718790|ref|YP_001035923.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK36]
gi|166229844|sp|A3CQB8.1|TRUA_STRSV RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|125498707|gb|ABN45373.1| tRNA pseudouridine synthase A, putative [Streptococcus sanguinis
SK36]
Length = 249
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 137/255 (53%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINK--GRPVVIHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D E + AL+ P DI + +FH+R++ SK Y + +
Sbjct: 61 QVLHFDLPEDRDE-EKLRFALDTQTPEDIDFISVEQVSDDFHSRYNKHSKTYEFLVDIGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P RHYA H Y L L+ +A G HDF+ F D++ ++ RFD
Sbjct: 120 PKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRFD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
L G+GFLY+Q+RNMV LL+IG + +P + + +ILA +DR LA +
Sbjct: 180 AER--NFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPIEQIQRILAEKDR-HLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AGPNGLYLKEIRYEE 249
>gi|83645231|ref|YP_433666.1| tRNA pseudouridine synthase A [Hahella chejuensis KCTC 2396]
gi|83633274|gb|ABC29241.1| tRNA pseudouridine synthase A [Hahella chejuensis KCTC 2396]
Length = 283
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 145/276 (52%), Gaps = 21/276 (7%)
Query: 34 TNNTVKPPTDDSFPGF-KWRLVIAYDGTRYAGWQFQTSP-PTIQCIVEKALIRVTKLERE 91
+N ++ P ++D P + LV+ YDG+RY GWQ Q S P++Q VE AL +V
Sbjct: 6 SNQSLYPLSNDLLPDTGRVALVLGYDGSRYHGWQAQNSGVPSVQAEVESALAKVAD---H 62
Query: 92 DLRLVGASRTDTGVHAWGQVAHFIT-----PFSYDGLESIHAALNGLLPPDIRVREISAA 146
+ +V A RTD GVHA QV HF T P+S+ +N LP D+ V A
Sbjct: 63 PVSVVCAGRTDAGVHAVNQVVHFETKALRSPYSWA------MGVNHFLPADVSVSWAGAV 116
Query: 147 VPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSA 206
+FHAR++A S+ Y Y IYN + + + + L+ M A + +G++DFSA
Sbjct: 117 PEDFHARYTATSRSYRYVIYNHPIRPAWLNNSVTWNYRPLDVESMSAAGAHLIGENDFSA 176
Query: 207 FVNVQRNDRLLNPVKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPP 266
F + +P +++ R +V G ++ +EVE + FL+ VRN+ L+ +G P
Sbjct: 177 FRGSDCQSK--SPFRNLTRLEVSRFGDMVVIEVEANAFLHHMVRNISGTLMAVGTGKKPS 234
Query: 267 DIVPKILATQDRKELAKYALSAPPHGLCLVEVKYNE 302
D V +LA++ R +K ++APP GL L V Y E
Sbjct: 235 DWVADVLASKKR---SKAGVTAPPFGLYLTSVTYPE 267
>gi|406600600|ref|YP_006745946.1| tRNA pseudouridine synthase A [Leuconostoc gelidum JB7]
gi|406372135|gb|AFS41060.1| tRNA pseudouridine synthase A [Leuconostoc gelidum JB7]
Length = 255
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 141/257 (54%), Gaps = 9/257 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPP-----TIQCIVEKALIRVTKLEREDLRLVGASRTDTG 104
+++ +++YDG+ + G+Q QT T+Q + KA+ ++ K +++VGASRTDTG
Sbjct: 3 RYKAIVSYDGSGFFGFQVQTKDGVERQRTVQGELNKAVNQMAKNPTHAIKVVGASRTDTG 62
Query: 105 VHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYK 164
VHA+GQV HF PF + + + LN LLP DI +R + +FHARF+ +K Y Y+
Sbjct: 63 VHAFGQVVHFDLPFDINVI-GVRKGLNTLLPKDIIIRSVDQVANDFHARFNTHAKRYVYR 121
Query: 165 IYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF 224
+ DPF+R Y H +KL+ ++ A +G+HDF++F +
Sbjct: 122 VSTQDFTDPFKRFYTGHFHWKLDVERIKIALPDLLGEHDFASFAASGNQTITTIRTITRA 181
Query: 225 RFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
V L L EG+ FLY Q+R MV +LL+IG + +++A +DR E A++
Sbjct: 182 DIKVNNDDQELILTFEGNAFLYNQIRIMVGVLLEIGNGRRDVHDIIRLIAVKDR-EQARF 240
Query: 285 ALSAPPHGLCLVEVKYN 301
+AP GL L E+ Y+
Sbjct: 241 --TAPASGLYLDEIYYD 255
>gi|198283837|ref|YP_002220158.1| tRNA pseudouridine synthase A [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218666580|ref|YP_002426474.1| tRNA pseudouridine synthase A [Acidithiobacillus ferrooxidans ATCC
23270]
gi|198248358|gb|ACH83951.1| tRNA pseudouridine synthase A [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218518793|gb|ACK79379.1| tRNA pseudouridine synthase A [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 271
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 135/256 (52%), Gaps = 9/256 (3%)
Query: 48 GFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHA 107
G +W L + YDG + GWQ Q ++Q +VE AL RV + + +V A RTDTGVHA
Sbjct: 9 GTRWALGLEYDGNGFCGWQRQLDQDSVQGVVEAALSRVAQCP---ISVVVAGRTDTGVHA 65
Query: 108 WGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
QV HF +P + A N LP + +R FHARFSA ++ Y Y I N
Sbjct: 66 LCQVVHFDSPVLRRPEAWVRGA-NTALPAGVALRWARVVPDSFHARFSATARRYRYVILN 124
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
R++ L+ M+ AA+ +G HDFSAF + +PV+++ +
Sbjct: 125 RREKSALWRNHTAWIYSPLDVEAMQAAAQTLLGTHDFSAFRAAACQAK--SPVRNLCQLR 182
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V+ G L+ ++ E +GFL+ VRN+V +L+ IGK P D ++LA++DR + ++
Sbjct: 183 VVRRGDLIAVDAEANGFLHHMVRNLVGVLIAIGKADRPVDWAAEVLASRDR---CRAGVT 239
Query: 288 APPHGLCLVEVKYNEE 303
APP GL V +Y E
Sbjct: 240 APPGGLYFVAPRYPAE 255
>gi|423319591|ref|ZP_17297466.1| tRNA pseudouridine synthase A [Lactobacillus crispatus FB049-03]
gi|423320387|ref|ZP_17298259.1| tRNA pseudouridine synthase A [Lactobacillus crispatus FB077-07]
gi|405587884|gb|EKB61605.1| tRNA pseudouridine synthase A [Lactobacillus crispatus FB049-03]
gi|405606037|gb|EKB79034.1| tRNA pseudouridine synthase A [Lactobacillus crispatus FB077-07]
Length = 262
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 143/255 (56%), Gaps = 9/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ +AYDG + G+Q Q T+Q +E AL ++TK +R + + G+ RTD GVHA G
Sbjct: 4 RYKMTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGQR--VIVQGSGRTDAGVHAVG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + A+N ++P DI + FHAR+S K K Y Y++ D
Sbjct: 62 QVIHFDYPGKTIPANRMILAMNSMMPTDIIFDDCQIVDENFHARYSIKGKWYRYRVSLDH 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
++PF+R Y H Y L+ M+ AA+ +GKHDF++F R+ + V++++ +
Sbjct: 122 FVNPFKRFYTGHFPYPLDIEKMQIAAQDLLGKHDFTSF--AASGGRIEDKVRTIYYVKIT 179
Query: 230 E--MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E + + GSGFLY VR MVA LL+IG + P + +++A +DR+E+ + +
Sbjct: 180 EDKKDNEVIFDFIGSGFLYNMVRIMVAALLEIGNDRRPVHDLQRVIAAKDRQEVRQ---T 236
Query: 288 APPHGLCLVEVKYNE 302
A GL L V Y+E
Sbjct: 237 AHASGLYLYHVFYDE 251
>gi|163790163|ref|ZP_02184597.1| tRNA pseudouridine synthase A [Carnobacterium sp. AT7]
gi|159874654|gb|EDP68724.1| tRNA pseudouridine synthase A [Carnobacterium sp. AT7]
Length = 279
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 143/254 (56%), Gaps = 12/254 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTK-LEREDLRLVGASRTDTGVHAW 108
+++++I YDGT +AG+Q Q + T+Q ++KAL +TK LE + + G+ RTD+GVHA
Sbjct: 5 RYKMIIQYDGTHFAGFQIQPNDRTVQGEIQKALKIMTKGLE---IIIHGSGRTDSGVHAK 61
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF P +E++ ALN L ++ V +++ FHAR++ K Y Y++ +
Sbjct: 62 GQVIHFDYPILLP-VENMQRALNSLTTDELFVEKVAIVDTNFHARYNTSGKKYQYRVDLN 120
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
A+ +PF+R Y H Y ++ ++ A + G+HDFS+F N N V++V+ V
Sbjct: 121 AIPNPFKRLYTLHHPYPIDMEKLQNALKDLEGEHDFSSF--CASNSGRENKVRTVYEASV 178
Query: 229 IE--MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
++ L G+GFLY VR V LLQI P D + ++LA +DR E
Sbjct: 179 VKDIFNNELIFTFSGNGFLYNMVRIFVGTLLQIANGLRPADEIKRLLAVKDRNEAGP--- 235
Query: 287 SAPPHGLCLVEVKY 300
+A P GL L+EV Y
Sbjct: 236 TAKPQGLYLMEVYY 249
>gi|335031607|ref|ZP_08525034.1| tRNA pseudouridine synthase A [Streptococcus anginosus SK52 = DSM
20563]
gi|333769077|gb|EGL46224.1| tRNA pseudouridine synthase A [Streptococcus anginosus SK52 = DSM
20563]
Length = 249
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 141/256 (55%), Gaps = 12/256 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLV-GASRTDTGVHAW 108
+++ +I+YDG +AG+Q Q ++Q +EK L TK+ R +L ++ GA RTD+GVHA
Sbjct: 3 RYKAIISYDGHDFAGFQRQPHARSVQEEIEKTL---TKINRGELVIIHGAGRTDSGVHAL 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF P D E + AL+ P DI + +FH+R+ SK Y + +
Sbjct: 60 GQVIHFDLPQKRDE-EKLRFALDTQTPEDIDFISVEEVNEDFHSRYWKHSKTYEFIVDVG 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF--RF 226
+P RHYA H Y L+ +L++ A G HDF+ F + N V+++ R
Sbjct: 119 RPKNPMMRHYATHFPYPLDISLIKNAIAKLEGTHDFTGF--TASGTSVENKVRTITEARL 176
Query: 227 DVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
D E L G+GFLY+Q+RNMV LL+IG + +P + + +IL ++R LA
Sbjct: 177 DFDEKRNFLIFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIDRILTEKNR-HLA--GP 233
Query: 287 SAPPHGLCLVEVKYNE 302
+A P+GL L E++Y E
Sbjct: 234 TAAPNGLYLKEIRYEE 249
>gi|313897268|ref|ZP_07830812.1| tRNA pseudouridine synthase A [Clostridium sp. HGF2]
gi|373122788|ref|ZP_09536648.1| tRNA pseudouridine synthase A [Erysipelotrichaceae bacterium 21_3]
gi|422327013|ref|ZP_16408041.1| tRNA pseudouridine synthase A [Erysipelotrichaceae bacterium
6_1_45]
gi|312957989|gb|EFR39613.1| tRNA pseudouridine synthase A [Clostridium sp. HGF2]
gi|371662740|gb|EHO27938.1| tRNA pseudouridine synthase A [Erysipelotrichaceae bacterium 21_3]
gi|371664503|gb|EHO29676.1| tRNA pseudouridine synthase A [Erysipelotrichaceae bacterium
6_1_45]
Length = 252
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 141/253 (55%), Gaps = 9/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ ++YDGT Y GWQ QT+ +IQ +E A+ K+E +R+ + RTD VHA G
Sbjct: 3 RYKVTLSYDGTAYGGWQRQTNTHSIQQEIEAAM---EKIEGNFIRITASGRTDAHVHALG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + E+ ALN LLP DIR++++ +FHARF A SK Y Y I D
Sbjct: 60 QVFHFDSAKDL-APENWRRALNSLLPHDIRIQDVCLVEDDFHARFHAVSKRYDYLITTD- 117
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
V +PF HY L+ M + A F+G HDF++F + + + R + VK++ R D++
Sbjct: 118 VNNPFYYHYMGKDRKVLDVKRMSECARVFLGTHDFTSFTSSKLDPR-KSKVKTITRLDIV 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ ++L EG+GFL VR + L++ GK + V ++L QD K L +Y A
Sbjct: 177 QEEHAVRLVFEGNGFLRYMVRMIAQTLIEAGKHRLDVADVKQMLYGQD-KHLCRY--KAQ 233
Query: 290 PHGLCLVEVKYNE 302
GL LV V Y +
Sbjct: 234 AEGLYLVHVTYAD 246
>gi|414085611|ref|YP_006994325.1| tRNA pseudouridine synthase A [Carnobacterium maltaromaticum LMA28]
gi|412999201|emb|CCO13010.1| tRNA pseudouridine synthase A [Carnobacterium maltaromaticum LMA28]
Length = 272
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 141/256 (55%), Gaps = 10/256 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ I YDGT Y+G+Q Q T+Q +EKAL +TK ++L + RTD GVHA G
Sbjct: 5 RYKVTIQYDGTNYSGFQIQPKDRTVQGDIEKALKTMTK--GIAIKLQASGRTDAGVHALG 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV H+ P + E + ALN L +I + ++ FHAR+ K Y Y++ +
Sbjct: 63 QVIHYDYP-AMIPPERMQQALNSLTTDEIAIVKVEIVDETFHARYFTAEKTYQYRVNTNQ 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
V+DPF+R+YA H Y ++ ++ A VG+HDFS+F V+ N V++++ DVI
Sbjct: 122 VVDPFRRNYALHHPYPVHLDDLKAALTDIVGEHDFSSFCAVKSGRE--NKVRTIYEADVI 179
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E L G+GFLY VR ++ LLQI P + +I+A +DR++ +
Sbjct: 180 WNEATGDLIFTFRGNGFLYNMVRILIGTLLQIANGRRPVHDLARIIAAKDRQQAGP---T 236
Query: 288 APPHGLCLVEVKYNEE 303
A P GL L++V Y +
Sbjct: 237 ASPSGLYLLKVTYKSQ 252
>gi|421489779|ref|ZP_15937155.1| tRNA pseudouridine(38-40) synthase [Streptococcus anginosus SK1138]
gi|400374367|gb|EJP27286.1| tRNA pseudouridine(38-40) synthase [Streptococcus anginosus SK1138]
Length = 249
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 139/256 (54%), Gaps = 12/256 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLV-GASRTDTGVHAW 108
+++ +I+YDG +AG+Q Q ++Q +EK L TK+ R +V GA RTD+GVHA
Sbjct: 3 RYKSIISYDGHDFAGFQRQPHARSVQEEIEKTL---TKINRGKPVIVHGAGRTDSGVHAL 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF P DG E + AL+ P DI + FH+R+ SK Y + +
Sbjct: 60 GQVIHFDLPQKRDG-EKLRFALDTQTPEDIDFISVEEVNEAFHSRYCKHSKTYEFIVDIG 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF--RF 226
+P R+YA H Y L+ +L+ +A E G HDF+ F + N V+++ R
Sbjct: 119 RPKNPMMRYYATHYPYPLDLSLIEEAIEKLEGTHDFTGF--TASGTSVENKVRTITEARL 176
Query: 227 DVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
D E L G+GFLY+Q+RNMV LL+IG +P + + +IL +DR LA
Sbjct: 177 DFDEKRNFLIFTFSGNGFLYKQIRNMVGTLLKIGNGRMPVEQIDRILTEKDR-HLA--GP 233
Query: 287 SAPPHGLCLVEVKYNE 302
+A P+GL L E++Y E
Sbjct: 234 TAAPNGLYLKEIRYEE 249
>gi|386316261|ref|YP_006012425.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|417751770|ref|ZP_12400035.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|323126548|gb|ADX23845.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|333772436|gb|EGL49284.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
Length = 249
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 143/258 (55%), Gaps = 16/258 (6%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDGT ++G+Q Q+ T+Q +EK L ++ + + + GA RTD GVHA+G
Sbjct: 3 RYKATISYDGTLFSGFQRQSHARTVQEEIEKTLQKLA--SGQPVPIHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + AL+ P DI V +++ +FH R+ SK Y + + N
Sbjct: 61 QVIHFDLPQKRD-LEKLRFALDTQTPDDIDVVDLAIVADDFHCRYQKHSKTYEFLVDNGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P RHYA H Y L+ M++A + VG HDF+ F + + N V+++ ++
Sbjct: 120 PKNPMMRHYATHYPYPLDINKMQEAIKDLVGTHDFTGFTAAGTS--VENKVRTITEATLV 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ L G+GFLY+QVRNMV LL+IG +P + + IL +++R+ L+
Sbjct: 178 QDDKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVEQIKVILDSKNRQ------LA 231
Query: 288 APP---HGLCLVEVKYNE 302
P +GL L E++Y +
Sbjct: 232 GPTPAGNGLYLKEIRYED 249
>gi|340787061|ref|YP_004752526.1| tRNA pseudouridine synthase A [Collimonas fungivorans Ter331]
gi|340552328|gb|AEK61703.1| tRNA pseudouridine synthase A [Collimonas fungivorans Ter331]
Length = 280
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 97/262 (37%), Positives = 137/262 (52%), Gaps = 16/262 (6%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L + YDGT + GWQ Q S T+Q +E AL K + + A RTD+GVHA QV
Sbjct: 19 LGVQYDGTPWQGWQTQPSGKTVQDRLEAAL---QKFAQGAIDTTCAGRTDSGVHALEQVV 75
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVRE------ISAAVPEFHARFSAKSKIYHYKIY 166
HF T S + + LN LPP I VR ++ +FHARFSA ++ YHY +Y
Sbjct: 76 HFDTALSRETFSWVRG-LNAFLPPSIAVRWAHQLPLLAEGEDQFHARFSATARTYHYLLY 134
Query: 167 NDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRF 226
N+ V P A L LMRQAA + VG HDFSAF V+ + +PV+++
Sbjct: 135 NNPVRSPLLEGKAGWVFRPLELELMRQAAAHLVGTHDFSAFRAVECQAK--SPVRTMEEI 192
Query: 227 DVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
+ G L+ + + FL+ VRN+V L+ G + PP+ + ++LA +DR A +
Sbjct: 193 RIERRGDLIVFSLRANAFLHHMVRNIVGSLIYAGNASKPPEWLAELLAQRDRGRAAPTFM 252
Query: 287 SAPPHGLCLVEVKYNEEHLRLP 308
P GL L +V Y+ + RLP
Sbjct: 253 ---PDGLYLAQVAYDPK-WRLP 270
>gi|410494048|ref|YP_006903894.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|410439208|emb|CCI61836.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 249
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 143/258 (55%), Gaps = 16/258 (6%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDGT ++G+Q Q+ T+Q +EK L ++ + + + GA RTD GVHA+G
Sbjct: 3 RYKATISYDGTLFSGFQRQSHARTVQEEIEKTLQKLA--SGQPVPIHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D LE + AL+ P DI V +++ +FH R+ SK Y + + N
Sbjct: 61 QVIHFDLPQKRD-LEKLRFALDTQTPADIDVVDLAIVADDFHCRYQKHSKTYEFLVDNGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P RHYA H Y L+ M++A + VG HDF+ F + + N V+++ ++
Sbjct: 120 PKNPMMRHYATHYPYPLDINKMQEAIKDLVGTHDFTGFTAAGTS--VENKVRTITEATLV 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ L G+GFLY+QVRNMV LL+IG +P + + IL +++R+ L+
Sbjct: 178 QDDKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVEQIKVILDSKNRQ------LA 231
Query: 288 APP---HGLCLVEVKYNE 302
P +GL L E++Y +
Sbjct: 232 GPTPAGNGLYLKEIRYED 249
>gi|423081690|ref|ZP_17070292.1| tRNA pseudouridine synthase A [Clostridium difficile 002-P50-2011]
gi|423085156|ref|ZP_17073611.1| tRNA pseudouridine synthase A [Clostridium difficile 050-P50-2011]
gi|357550268|gb|EHJ32093.1| tRNA pseudouridine synthase A [Clostridium difficile 002-P50-2011]
gi|357550488|gb|EHJ32302.1| tRNA pseudouridine synthase A [Clostridium difficile 050-P50-2011]
Length = 243
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 133/249 (53%), Gaps = 10/249 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
++ I Y G Y GWQ Q IQ +E+A+ +TK E+ L+G+ RTD+GVHA GQ+
Sbjct: 5 KITIQYKGKNYCGWQKQPDSLGIQGTIERAIYDITK---EETNLIGSGRTDSGVHAIGQI 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F S +ESI ALN LP DI V E +FH+R+SAK K Y Y +YN
Sbjct: 62 ANFKIN-SGISIESIPMALNAKLPKDISVIEACEVNDDFHSRYSAKGKTYKYLVYNSKFR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
+P +Y Y+L+ M A+ +G HDF F++ + + V++++ D+ +
Sbjct: 121 NPILSEISYQVKYELDFDKMCSEAKSLLGTHDFKGFMS--SGSSVKDTVRTIYDIDISKK 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L+ E+ G+GFLY VR +V L+ +G+ I + I + K ++ +AP
Sbjct: 179 DDLITFEISGNGFLYNMVRIIVGTLVDMGRGRINEPFLDIIQS----KTRSRCGHTAPAQ 234
Query: 292 GLCLVEVKY 300
GL L +V Y
Sbjct: 235 GLFLKKVHY 243
>gi|422847509|ref|ZP_16894192.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK72]
gi|422877218|ref|ZP_16923688.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1056]
gi|325686853|gb|EGD28878.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK72]
gi|332359857|gb|EGJ37671.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1056]
Length = 249
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 138/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYDFAGFQRQPHARSVQEEIEKTLTRINK--GQPVVIHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D E + AL+ P DI + +FH+R++ SK Y + +
Sbjct: 61 QVLHFDLPEDRDE-EKLRFALDTQTPEDIDFISVEQVSEDFHSRYNKHSKTYEFLVDIGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P RHYA H Y L L+ +A G HDF+ F D++ ++ R+D
Sbjct: 120 PKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRYD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
L G+GFLY+Q+RNMV LL+IG + +P + + +ILA +DR LA +
Sbjct: 180 AER--NFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDR-HLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AGPNGLYLKEIRYEE 249
>gi|406580853|ref|ZP_11056041.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD4E]
gi|406582789|ref|ZP_11057886.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD3E]
gi|406585103|ref|ZP_11060098.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD2E]
gi|406590682|ref|ZP_11065041.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD1E]
gi|410936048|ref|ZP_11367920.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD5E]
gi|404453484|gb|EKA00540.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD4E]
gi|404457526|gb|EKA04063.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD3E]
gi|404463085|gb|EKA08783.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD2E]
gi|404469056|gb|EKA13895.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD1E]
gi|410735639|gb|EKQ77548.1| tRNA pseudouridine synthase A [Enterococcus sp. GMD5E]
Length = 248
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 140/254 (55%), Gaps = 10/254 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +IAYDGT + G+Q Q + T+Q VEK L ++ +++ + G+ RTD GVHA G
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMAN--GKEITVFGSGRTDAGVHAIG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P LE + AL+ P DI VR++ +FHAR+ K Y +++
Sbjct: 61 QVIHFDYP-EERPLERMRFALDTQSPEDIAVRQVEVVSEDFHARYLVTEKTYQFRVDIGK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF--RFD 227
PF+RHYA + Y L+ +++A +G HDF++F + + V++++ + +
Sbjct: 120 PRSPFRRHYASYFPYPLDLEKIQRAIPDLLGTHDFTSF--CASGSSIEDKVRTIYEAKME 177
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V E L G+GFLY+ +R +V LL+IG +P D +P I+A +DR +
Sbjct: 178 VNETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGP---T 234
Query: 288 APPHGLCLVEVKYN 301
A P GL L EVKY
Sbjct: 235 AHPEGLYLYEVKYE 248
>gi|15644322|ref|NP_229374.1| tRNA pseudouridine synthase ACD [Thermotoga maritima MSB8]
gi|418045633|ref|ZP_12683728.1| tRNA pseudouridine synthase A [Thermotoga maritima MSB8]
gi|8134772|sp|Q9X1R0.1|TRUA_THEMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|4982143|gb|AAD36641.1|AE001802_10 pseudouridylate synthase I [Thermotoga maritima MSB8]
gi|351676518|gb|EHA59671.1| tRNA pseudouridine synthase A [Thermotoga maritima MSB8]
Length = 245
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 136/246 (55%), Gaps = 10/246 (4%)
Query: 54 VIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAH 113
VI YDG+ + G+Q Q T+Q ++E AL R+ K + + A RTDTGVHA GQ+
Sbjct: 7 VIEYDGSNFFGYQGQPDVRTVQGVIEDALERIFK---QRIYTQAAGRTDTGVHANGQLIA 63
Query: 114 FITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDP 173
F P E I A+N LP D+ V+E+ FH RF +IYHY I +
Sbjct: 64 FNCPNDRMTTEDIRNAMNANLPDDVYVKEVFEVPVNFHPRFDVTKRIYHYFILTSRQKNV 123
Query: 174 FQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM-G 232
F R Y + Y+L+ MR+A +Y G HDF++F ++R +PV++++R ++ +
Sbjct: 124 FLRKYVWWFPYELDLDAMRKAVKYLEGTHDFTSF-KTGSDER--DPVRTIYRIRILRLKN 180
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
L+ + VEG FL R VRN+VA L+++G + P+ + ++L +DR A +AP HG
Sbjct: 181 DLVLIRVEGRSFLRRMVRNIVAALVKVGLKQWEPEKMKEVLEARDRSAAAG---TAPAHG 237
Query: 293 LCLVEV 298
L +V
Sbjct: 238 LYFYKV 243
>gi|430748644|ref|YP_007211552.1| pseudouridylate synthase I [Thermobacillus composti KWC4]
gi|430732609|gb|AGA56554.1| pseudouridylate synthase I [Thermobacillus composti KWC4]
Length = 258
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/248 (37%), Positives = 132/248 (53%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L+++YDGT Y G+Q Q TIQ +E+A+ +T D+R+ G+ RTD GVHA GQV
Sbjct: 6 LIVSYDGTAYRGFQTQPGGGTIQDELERAIRSLTGT---DIRVEGSGRTDAGVHALGQVV 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T +E ALNG LP DI VR +FHAR+SA K Y Y I +
Sbjct: 63 NFRTETPIP-IEKWALALNGRLPDDIIVRSAHEMPEDFHARYSAIRKTYRYSISTGKFPE 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
F Y YH L+ MR + ++FVG+HDF+AF + + + V++++ + G
Sbjct: 122 IFTARYRYHHYRPLDEDAMRDSLKFFVGEHDFTAFSSAGAPRK--SNVRTIYEARLERDG 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
L L + GSGFLY VR + L++IG+ P +P IL +DR AP G
Sbjct: 180 GDLHLYLTGSGFLYNMVRIIAGTLIEIGEGKKAPGHIPAILEAKDRNMAGP---KAPAQG 236
Query: 293 LCLVEVKY 300
L L V+Y
Sbjct: 237 LALWRVEY 244
>gi|422850824|ref|ZP_16897494.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK150]
gi|325695572|gb|EGD37472.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK150]
Length = 249
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 138/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINK--GQPVVIHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D E + AL+ P DI + +FH+R++ SK Y + +
Sbjct: 61 QVLHFDLPEERDE-EKLRFALDTQTPEDIDFIRVEQVSDDFHSRYNKHSKTYEFLVDIGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P RHYA H Y L L+ +A G HDF+ F D++ ++ R+D
Sbjct: 120 PKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRYD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
L G+GFLY+Q+RNMV LL+IG + +P + + +ILA +DR LA +
Sbjct: 180 AER--NFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDR-HLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AGPNGLYLKEIRYEE 249
>gi|293567901|ref|ZP_06679242.1| tRNA pseudouridine synthase A [Enterococcus faecium E1071]
gi|427396968|ref|ZP_18889594.1| tRNA pseudouridine synthase A [Enterococcus durans FB129-CNAB-4]
gi|430843084|ref|ZP_19460986.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E1050]
gi|430861262|ref|ZP_19478851.1| tRNA pseudouridine synthase A [Enterococcus faecium E1573]
gi|430952305|ref|ZP_19486348.1| tRNA pseudouridine synthase A [Enterococcus faecium E1576]
gi|430999188|ref|ZP_19488156.1| tRNA pseudouridine synthase A [Enterococcus faecium E1578]
gi|431234974|ref|ZP_19502997.1| tRNA pseudouridine synthase A [Enterococcus faecium E1622]
gi|431255642|ref|ZP_19504765.1| tRNA pseudouridine synthase A [Enterococcus faecium E1623]
gi|431303512|ref|ZP_19508359.1| tRNA pseudouridine synthase A [Enterococcus faecium E1626]
gi|447911605|ref|YP_007393017.1| tRNA pseudouridine synthase A [Enterococcus faecium NRRL B-2354]
gi|291589486|gb|EFF21293.1| tRNA pseudouridine synthase A [Enterococcus faecium E1071]
gi|425722715|gb|EKU85609.1| tRNA pseudouridine synthase A [Enterococcus durans FB129-CNAB-4]
gi|430498138|gb|ELA74146.1| tRNA pseudouridine(38-40) synthase [Enterococcus faecium E1050]
gi|430550295|gb|ELA90092.1| tRNA pseudouridine synthase A [Enterococcus faecium E1573]
gi|430557440|gb|ELA96899.1| tRNA pseudouridine synthase A [Enterococcus faecium E1576]
gi|430563295|gb|ELB02524.1| tRNA pseudouridine synthase A [Enterococcus faecium E1578]
gi|430572834|gb|ELB11670.1| tRNA pseudouridine synthase A [Enterococcus faecium E1622]
gi|430577840|gb|ELB16420.1| tRNA pseudouridine synthase A [Enterococcus faecium E1623]
gi|430580153|gb|ELB18633.1| tRNA pseudouridine synthase A [Enterococcus faecium E1626]
gi|445187314|gb|AGE28956.1| tRNA pseudouridine synthase A [Enterococcus faecium NRRL B-2354]
Length = 248
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 140/254 (55%), Gaps = 10/254 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +IAYDGT + G+Q Q + T+Q VEK L ++ +++ + G+ RTD GVHA G
Sbjct: 3 RYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMAN--GKEITVFGSGRTDAGVHAIG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P LE + AL+ P DI VR++ +FHAR+ K Y +++
Sbjct: 61 QVIHFDYP-EERPLERMRFALDTQSPEDIAVRQVEVVSEDFHARYLVTEKTYQFRVDIGK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF--RFD 227
PF+RHYA + Y L+ +++A +G HDF++F + + V++++ + +
Sbjct: 120 PRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSF--CASGSSIEDKVRTIYEAKME 177
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V E L G+GFLY+ +R +V LL+IG +P D +P I+A +DR +
Sbjct: 178 VNETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGP---T 234
Query: 288 APPHGLCLVEVKYN 301
A P GL L EVKY
Sbjct: 235 AHPEGLYLYEVKYE 248
>gi|262282044|ref|ZP_06059813.1| tRNA pseudouridine synthase A [Streptococcus sp. 2_1_36FAA]
gi|262262498|gb|EEY81195.1| tRNA pseudouridine synthase A [Streptococcus sp. 2_1_36FAA]
Length = 249
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGHDFAGFQRQPHARSVQEEIEKTLTRINK--GQPVVIHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D E + AL+ P DI + +FHAR++ SK Y + +
Sbjct: 61 QVLHFDLPEERDE-EKLRFALDTQTPEDIDFISVERVSDDFHARYNKHSKTYEFLVDIGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P R+YA H Y L +L+ +A G HDF+ F D++ ++ R+D
Sbjct: 120 PKNPMMRYYATHYPYPLELSLLEEAITQLEGTHDFTGFTASGTSVEDKVRTITEAKVRYD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
L G+GFLY+Q+RNMV LL+IG + +P + + +ILA +DR LA +
Sbjct: 180 AER--NFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPIEQIQRILAEKDR-HLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AGPNGLYLKEIRYEE 249
>gi|339491268|ref|YP_004705773.1| tRNA pseudouridine synthase A [Leuconostoc sp. C2]
gi|338852940|gb|AEJ31150.1| tRNA pseudouridine synthase A [Leuconostoc sp. C2]
Length = 256
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 140/257 (54%), Gaps = 9/257 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTS-----PPTIQCIVEKALIRVTKLEREDLRLVGASRTDTG 104
+++ +++YDG+ + G+Q QT T+Q + KA+ ++ K E +++VGASRTDTG
Sbjct: 3 RYKAIVSYDGSGFFGFQVQTKNGIERQRTVQGELTKAVNQMAKKPTEPIKVVGASRTDTG 62
Query: 105 VHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYK 164
VHA+GQV HF PF + + LN LLP D+ ++++ P+FHARF+ +K Y Y+
Sbjct: 63 VHAFGQVVHFDLPFDINE-NGVRKGLNTLLPRDMLIKQVDKVTPDFHARFNTHAKRYIYR 121
Query: 165 IYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF 224
+ DPF+R Y H + L+ ++ A +G+HDF++F +
Sbjct: 122 VSTQDFTDPFKRQYTGHFQWHLDIERIKSALPDLLGEHDFASFAASGNQTATTIRTITRA 181
Query: 225 RFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
+ L EG+ FLY Q+R MV +LL+IG + +++ +DR E A++
Sbjct: 182 DVTIKPDDQELVFTFEGNAFLYNQIRIMVGVLLEIGNGRRDVHDILRLITVKDR-EQARF 240
Query: 285 ALSAPPHGLCLVEVKYN 301
+AP GL L ++ YN
Sbjct: 241 --TAPASGLYLDQIYYN 255
>gi|126697674|ref|YP_001086571.1| transfer RNA pseudouridine synthase A 1 [Clostridium difficile 630]
gi|254973765|ref|ZP_05270237.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-66c26]
gi|255091155|ref|ZP_05320633.1| tRNA pseudouridine synthase 1 [Clostridium difficile CIP 107932]
gi|255099266|ref|ZP_05328243.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-63q42]
gi|255305049|ref|ZP_05349221.1| tRNA pseudouridine synthase 1 [Clostridium difficile ATCC 43255]
gi|255312809|ref|ZP_05354392.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-76w55]
gi|255515568|ref|ZP_05383244.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-97b34]
gi|255648663|ref|ZP_05395565.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-37x79]
gi|260681880|ref|YP_003213165.1| tRNA pseudouridine synthase 1 [Clostridium difficile CD196]
gi|260685478|ref|YP_003216611.1| tRNA pseudouridine synthase 1 [Clostridium difficile R20291]
gi|306518785|ref|ZP_07405132.1| tRNA pseudouridine synthase ACD [Clostridium difficile QCD-32g58]
gi|384359433|ref|YP_006197285.1| tRNA pseudouridine synthase ACD [Clostridium difficile BI1]
gi|423089471|ref|ZP_17077829.1| tRNA pseudouridine synthase A [Clostridium difficile 70-100-2010]
gi|115249111|emb|CAJ66922.1| transfer RNA pseudouridine synthase A 1 [Clostridium difficile 630]
gi|260208043|emb|CBA60248.1| tRNA pseudouridine synthase 1 [Clostridium difficile CD196]
gi|260211494|emb|CBE01638.1| tRNA pseudouridine synthase 1 [Clostridium difficile R20291]
gi|357558081|gb|EHJ39588.1| tRNA pseudouridine synthase A [Clostridium difficile 70-100-2010]
Length = 243
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 134/249 (53%), Gaps = 10/249 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
++ I Y+G Y GWQ Q IQ +E+A+ +TK E+ L+G+ RTD+GVHA GQ+
Sbjct: 5 KIKIQYNGKNYCGWQKQPDSLGIQGTIERAIYDITK---EETSLIGSGRTDSGVHAIGQI 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F S +ESI ALN LP DI V E +FH+R+SAK K Y Y +YN
Sbjct: 62 ANFKIN-SGISIESIPMALNAKLPKDISVIEACEVNDDFHSRYSAKGKTYKYLVYNSKFR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
+P +Y Y+L+ M A+ +G HDF F++ + + V++++ D+ +
Sbjct: 121 NPILSEISYQVKYELDFDKMCSEAKSLLGTHDFKGFMS--SGSSVKDTVRTIYDIDISKK 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L+ E+ G+GFLY VR +V L+ +G+ I + I + K ++ +AP
Sbjct: 179 DDLITFEISGNGFLYNMVRIIVGTLVDMGRGRINEPFLDIIQS----KTRSRCGHTAPAQ 234
Query: 292 GLCLVEVKY 300
GL L +V Y
Sbjct: 235 GLFLKKVHY 243
>gi|331269740|ref|YP_004396232.1| tRNA pseudouridine synthase A [Clostridium botulinum BKT015925]
gi|329126290|gb|AEB76235.1| tRNA pseudouridine synthase A [Clostridium botulinum BKT015925]
Length = 245
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 135/250 (54%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDGTRY GWQ + TIQC VE L +L E++ L+ + RTD GVHA Q
Sbjct: 5 KLTIQYDGTRYKGWQKLGNTDNTIQCKVENVL---NELLGEEISLIASGRTDAGVHANMQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
+A+F T + ++I LP DI V ++ A FH+R++ K KIY Y I N+ V
Sbjct: 62 IANFKTDSNVSN-DTILKHCYKYLPHDIVVTNVADASENFHSRYNVKKKIYTYNICNNPV 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
D F R Y+YH L+ M++A++ F+G+HDF +F ++ + F +
Sbjct: 121 HDVFTRKYSYHVKETLDIKKMKEASKLFIGEHDFKSFTALKSKKKSTVKTIDSISFKKKD 180
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+++ G+GFLY+ +R +V L+ +G + + + I+ +DR + +AP
Sbjct: 181 NN--IEVIFTGNGFLYKMIRILVGSLINVGLGKLTIEDLENIMNEKDRSIAPE---TAPA 235
Query: 291 HGLCLVEVKY 300
HGL L EVKY
Sbjct: 236 HGLILTEVKY 245
>gi|410628439|ref|ZP_11339158.1| tRNA pseudouridine38-40 synthase [Glaciecola mesophila KMM 241]
gi|410151915|dbj|GAC25927.1| tRNA pseudouridine38-40 synthase [Glaciecola mesophila KMM 241]
Length = 263
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 136/250 (54%), Gaps = 9/250 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L + YDG R+ GWQ Q ++Q +E+AL R+ E +R+V A RTD GVHA GQV
Sbjct: 5 LGVEYDGARFHGWQRQNEVISVQQHLEEALTRIAN---EPIRVVCAGRTDAGVHATGQVV 61
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
HF T S + +N LP I VR + A +FHARFSA ++ Y Y IYN+ +
Sbjct: 62 HFETT-SQRPDRAWTLGINTYLPDTISVRWVKAVPEDFHARFSATARRYRYIIYNNTLRS 120
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
+ H L+ LM +AA+ VGKHDFS+F V N + +++ V MG
Sbjct: 121 GILANGVTHIYGDLDHELMNEAAQKLVGKHDFSSFRAV--NCQAKTATRTMSHIRVKRMG 178
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ ++V+ + FL+ VRN+ L+ IG + P + V ++L +DR K ++A P+G
Sbjct: 179 DYIVIDVQANAFLHHMVRNITGTLVAIGHKEKPVEWVDELLEVKDR---TKAGITALPNG 235
Query: 293 LCLVEVKYNE 302
L LV V Y E
Sbjct: 236 LYLVHVTYPE 245
>gi|225175641|ref|ZP_03729635.1| tRNA pseudouridine synthase A [Dethiobacter alkaliphilus AHT 1]
gi|225168970|gb|EEG77770.1| tRNA pseudouridine synthase A [Dethiobacter alkaliphilus AHT 1]
Length = 246
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 136/254 (53%), Gaps = 14/254 (5%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L + YDGT Y G+Q Q + T+Q +E+A + K+ + +R+ + RTDTGVHA GQV
Sbjct: 5 KLTLGYDGTGYHGFQLQKNAVTVQQKLEEA---IEKVMGQKVRITASGRTDTGVHATGQV 61
Query: 112 AHFITPFSYDGL--ESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
+F F+ G+ + I ALN +LP DI + FHARF A K Y Y I N A
Sbjct: 62 INF---FAQTGIPPQRIPHALNAVLPRDIVIYAAEIVSDSFHARFDAVGKTYTYTIDNGA 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
RH+AYH + L+ LM+QAA GKHDF++F + + V++++R DV
Sbjct: 119 HPQVLSRHHAYHVRFPLDANLMKQAAATLQGKHDFTSF--MASGSSVKTTVRNLYRLDVE 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ + GFLY VR + L+++G+ ++ P I D K + + P
Sbjct: 177 INWPYITITAAADGFLYNMVRIIAGTLIEVGRGKRDHNLGPVI----DAKNRHRAGWTVP 232
Query: 290 PHGLCLVEVKYNEE 303
HGL L EV+YN++
Sbjct: 233 AHGLVLREVEYNKK 246
>gi|240143728|ref|ZP_04742329.1| tRNA pseudouridine synthase A [Roseburia intestinalis L1-82]
gi|257204287|gb|EEV02572.1| tRNA pseudouridine synthase A [Roseburia intestinalis L1-82]
gi|291537295|emb|CBL10407.1| pseudouridylate synthase I [Roseburia intestinalis M50/1]
gi|291539242|emb|CBL12353.1| pseudouridylate synthase I [Roseburia intestinalis XB6B4]
Length = 251
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 138/252 (54%), Gaps = 9/252 (3%)
Query: 51 WRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+++++ YDGTRY GWQ + TIQ ++ L +K+ + + G+ RTD GVHA GQ
Sbjct: 4 YKMILQYDGTRYRGWQVLPAELTIQGKLQDVL---SKMAGYQVEVTGSGRTDAGVHAKGQ 60
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
A+F +D + I LN LP DI V E+ FH+R+ A K Y Y+I+ +
Sbjct: 61 TANFHLREEWDE-DKILFYLNQYLPEDIAVCEVKRVDERFHSRYQAVEKTYLYRIHTGKI 119
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
+ F+R Y Y L+ MR+AAEY G HDF +F ++ + + V+++ R + E
Sbjct: 120 PEVFERRYVYDYTEPLDVNRMRKAAEYLCGTHDFKSFCGNKKMKK--STVRTISRIQIKE 177
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+ +Q+ G+GFL VR + L++IG P+ V +IL ++R E A Y +AP
Sbjct: 178 LPGEIQIYYTGNGFLQNMVRILTGTLIEIGDGRRTPEDVSEILEAKNR-ERAGY--TAPA 234
Query: 291 HGLCLVEVKYNE 302
GL L+EV Y +
Sbjct: 235 CGLTLLEVIYGK 246
>gi|355681879|ref|ZP_09062167.1| tRNA pseudouridine synthase A [Clostridium citroniae WAL-17108]
gi|354811290|gb|EHE95923.1| tRNA pseudouridine synthase A [Clostridium citroniae WAL-17108]
Length = 247
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 141/252 (55%), Gaps = 10/252 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ RLV+AYDGT Y GWQ Q TI+ + + L T L E ++++GASRTD+GVHA G
Sbjct: 3 RVRLVVAYDGTHYHGWQIQPGRVTIESELNEKL---TMLLGEPIQVIGASRTDSGVHARG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
VA F T + I ALN LP DIRV+ ++H R K Y YKI N
Sbjct: 60 NVAVFDTEHRMPA-DKICLALNQRLPEDIRVQSSEEVAADWHPRKHRCIKTYEYKIMNRR 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV- 228
+ P QR Y++ + L+ M +AA+ G+HDF +F +V + ++ + V++++ D+
Sbjct: 119 IEMPTQRFYSHFCYFHLDLDQMCRAADILTGEHDFKSFCSV--HTQVTDTVRTIYSLDIR 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ ++ + V G+GFLY VR + L+ +G I P + +IL ++R+ + +A
Sbjct: 177 RDEEDMITIRVTGNGFLYNMVRIIAGTLIAVGMGQIHPGEMEQILEARERR---RAGPTA 233
Query: 289 PPHGLCLVEVKY 300
P GL L+E+KY
Sbjct: 234 PARGLTLIEMKY 245
>gi|297205058|ref|ZP_06922454.1| tRNA-pseudouridine synthase I [Lactobacillus jensenii JV-V16]
gi|297149636|gb|EFH29933.1| tRNA-pseudouridine synthase I [Lactobacillus jensenii JV-V16]
Length = 262
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 144/255 (56%), Gaps = 9/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ +AYDG + G+Q Q + T+Q +E+AL ++ K +R + + G+ RTD GVHA G
Sbjct: 3 RFKMTMAYDGHLFHGFQKQPNQRTVQGTIEEALKKMAKGQR--IVVHGSGRTDAGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + ALN ++P DI ++ +FH ++S K Y Y + D
Sbjct: 61 QVIHFDFPNDNIPANRMVLALNSMMPTDIIFKDAEIVNEDFHVQYSTHGKWYRYIVNQDR 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+DPF+R Y H YKLN + M++AA +G+HDF++F ++++ V++++ +
Sbjct: 121 FVDPFKRFYTGHYPYKLNVSKMQEAALDLLGEHDFTSF--AASGGQIIDKVRTIYYVKIW 178
Query: 230 EMGALLQL--EVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ ++ + G+GFLY VR MV LL+IG E P + +++ +DR+E+ +
Sbjct: 179 QKSEENEIIFDFIGNGFLYNMVRIMVGALLEIGNERRPVHDLKRVILAKDRQEVRN---T 235
Query: 288 APPHGLCLVEVKYNE 302
AP GL L V Y E
Sbjct: 236 APASGLYLYHVFYEE 250
>gi|256852067|ref|ZP_05557454.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 27-2-CHN]
gi|260661364|ref|ZP_05862277.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 115-3-CHN]
gi|256615479|gb|EEU20669.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 27-2-CHN]
gi|260547819|gb|EEX23796.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 115-3-CHN]
Length = 262
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 144/255 (56%), Gaps = 9/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ +AYDG + G+Q Q + T+Q +E+AL ++ K +R + + G+ RTD GVHA G
Sbjct: 3 RFKMTMAYDGHLFHGFQKQPNQRTVQGTIEEALKKMAKGQR--IVVHGSGRTDAGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + ALN ++P DI ++ +FH ++S K Y Y + D
Sbjct: 61 QVIHFDFPNDNIPANRMVLALNSMMPTDIIFKDAEIVNEDFHVQYSTHGKWYRYIVNQDR 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+DPF+R Y H YKLN + M++AA +G+HDF++F ++++ V++++ +
Sbjct: 121 FVDPFKRFYTGHYPYKLNVSKMQEAALDLLGEHDFTSF--AASGGQIIDKVRTIYYVKIW 178
Query: 230 EMGALLQL--EVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ ++ + G+GFLY VR MV LL+IG E P + +++ +DR+E+ +
Sbjct: 179 QKSEENEIIFDFIGNGFLYNMVRIMVGALLEIGNERRPVHDLKRVILAKDRQEVIN---T 235
Query: 288 APPHGLCLVEVKYNE 302
AP GL L V Y E
Sbjct: 236 APASGLYLYHVFYEE 250
>gi|227894551|ref|ZP_04012356.1| tRNA pseudouridine synthase A [Lactobacillus ultunensis DSM 16047]
gi|227863710|gb|EEJ71131.1| tRNA pseudouridine synthase A [Lactobacillus ultunensis DSM 16047]
Length = 262
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 145/255 (56%), Gaps = 9/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ +AYDG + G+Q Q T+Q VE AL ++TK +R + + G+ RTD GVHA G
Sbjct: 4 RYKMTMAYDGHLFHGFQLQPDQRTVQGTVEDALKKMTKGKR--VIVQGSGRTDAGVHAIG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + A+N ++P DI + +FHAR+S K K Y Y++ D
Sbjct: 62 QVIHFDYPGKTIPANRMILAMNSMMPMDIIFNKCQIVDEDFHARYSIKGKWYRYRVSLDH 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV- 228
++PF+R Y H Y+LN + M++AA +GKHDF++F ++ + V++++ ++
Sbjct: 122 FVNPFKRFYTGHFPYQLNISKMQEAARDLLGKHDFTSF--AASGGQIEDKVRTIYYVNIE 179
Query: 229 -IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E + + GSGFLY VR MVA LL+IG P + ++++ +DR+E+ + +
Sbjct: 180 KDEKENEVIFDFIGSGFLYNMVRIMVAALLEIGNGRRPIHDLKRVISAKDRQEVRQ---T 236
Query: 288 APPHGLCLVEVKYNE 302
A GL L V Y +
Sbjct: 237 AQASGLYLYHVFYED 251
>gi|296111462|ref|YP_003621844.1| tRNA pseudouridine synthase A [Leuconostoc kimchii IMSNU 11154]
gi|295832994|gb|ADG40875.1| tRNA pseudouridine synthase A [Leuconostoc kimchii IMSNU 11154]
Length = 256
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 140/257 (54%), Gaps = 9/257 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTS-----PPTIQCIVEKALIRVTKLEREDLRLVGASRTDTG 104
+++ +++YDG+ + G+Q QT T+Q + KA+ ++ K E +++VGASRTDTG
Sbjct: 3 RYKAIVSYDGSGFFGFQVQTKNGIERQRTVQGELTKAVNQMAKNPTEPIKVVGASRTDTG 62
Query: 105 VHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYK 164
VHA+GQV HF PF + + LN LLP D+ ++++ P+FHARF+ +K Y Y+
Sbjct: 63 VHAFGQVVHFDLPFDINE-NGVRKGLNTLLPRDMLIKQVDKVTPDFHARFNTHAKRYIYR 121
Query: 165 IYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF 224
+ DPF+R Y H + L+ ++ A +G+HDF++F +
Sbjct: 122 VSTQDFTDPFKRQYTGHFQWHLDIERIKSALPDLLGEHDFASFAASGNQTATTIRTITRA 181
Query: 225 RFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
+ L EG+ FLY Q+R MV +LL+IG + +++ +DR E A++
Sbjct: 182 DVTIKPDDQELVFTFEGNAFLYNQIRIMVGVLLEIGNGRRDVHDILRLITVKDR-EQARF 240
Query: 285 ALSAPPHGLCLVEVKYN 301
+AP GL L ++ YN
Sbjct: 241 --TAPASGLYLDQIYYN 255
>gi|109897925|ref|YP_661180.1| tRNA pseudouridine synthase A [Pseudoalteromonas atlantica T6c]
gi|123064742|sp|Q15VG2.1|TRUA_PSEA6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|109700206|gb|ABG40126.1| tRNA pseudouridine synthase A [Pseudoalteromonas atlantica T6c]
Length = 263
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 137/250 (54%), Gaps = 9/250 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L + YDG R+ GWQ Q ++Q +E+AL T++ E +R+V A RTD GVHA GQV
Sbjct: 5 LGVEYDGARFHGWQRQNEVISVQQHLEEAL---TRIANEPIRVVCAGRTDAGVHATGQVV 61
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
HF T S + +N LP I VR + A +FHARFSA ++ Y Y IYN+ +
Sbjct: 62 HFETT-SQRPDRAWTLGINTYLPDTISVRWVKAVPEDFHARFSATARRYRYIIYNNTLRS 120
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
+ H L+ LM +AA+ VGKHDFS+F V N + +++ V MG
Sbjct: 121 GILANGVTHIYGDLDHELMHEAAQKLVGKHDFSSFRAV--NCQAKTATRTMSHIRVKRMG 178
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ ++V+ + FL+ VRN+ L+ IG + P + V ++L +DR K ++A P+G
Sbjct: 179 DYIVIDVQANAFLHHMVRNITGTLVAIGHKEKPVEWVDELLEVKDR---TKAGITALPNG 235
Query: 293 LCLVEVKYNE 302
L LV V Y E
Sbjct: 236 LYLVHVTYPE 245
>gi|281412654|ref|YP_003346733.1| tRNA pseudouridine synthase A [Thermotoga naphthophila RKU-10]
gi|281373757|gb|ADA67319.1| tRNA pseudouridine synthase A [Thermotoga naphthophila RKU-10]
Length = 245
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 136/246 (55%), Gaps = 10/246 (4%)
Query: 54 VIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAH 113
VI YDG+ + G+Q Q T+Q ++E AL R+ K + + A RTD GVHA GQ+
Sbjct: 7 VIEYDGSNFFGYQGQPDVRTVQGVIEDALERIFK---QRIYTQAAGRTDAGVHANGQLIA 63
Query: 114 FITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDP 173
F P E I A+N LP D+ V+E+ FH RF +IYHY I +
Sbjct: 64 FNCPNDRMTTEDIKNAMNANLPDDVYVKEVFEVPVNFHPRFDVTKRIYHYFILTSRQKNV 123
Query: 174 FQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM-G 232
F R Y + Y+L+ MR+AA+Y G HDF++F ++R +PV++++R ++ +
Sbjct: 124 FLRKYVWWFPYELDLDAMRKAAKYLEGTHDFTSF-KTGSDER--DPVRTIYRIRILRLKN 180
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
L+ + VEG FL R VRN+VA L+++G + P+ + ++L +DR A +AP HG
Sbjct: 181 DLVLIRVEGRSFLRRMVRNIVAALVKVGLKQWEPEKMKEVLEARDRSAAAG---TAPAHG 237
Query: 293 LCLVEV 298
L +V
Sbjct: 238 LYFYKV 243
>gi|420265949|ref|ZP_14768461.1| tRNA pseudouridine synthase [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|394426812|gb|EJE99604.1| tRNA pseudouridine synthase [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 250
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 142/254 (55%), Gaps = 9/254 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
+ +AYDGT +AG+Q Q + T+Q ++EKA+ +++ +E + + G+ RTD GVHA+GQ+
Sbjct: 2 ITLAYDGTNFAGFQSQPNQRTVQDVLEKAVNKMST-AKEFVHIFGSGRTDAGVHAFGQIV 60
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
HF + I LN +LP D++V + EFHARF+A K Y Y++ +D
Sbjct: 61 HFDLENDIPA-QGIVNGLNSMLPLDMQVVDAKIVSKEFHARFTAHGKRYMYRVSRGRFVD 119
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM- 231
PF+R Y H Y LN L+++A +G HD+S+F V + + V++++ V E
Sbjct: 120 PFKRFYTGHYKYPLNIELIKEAIPDVIGTHDYSSF--VASGSQTKSHVRTIYDATVRENL 177
Query: 232 -GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+ E G+GFLY QVR MVA LL+IG P ++ +DR E +AP
Sbjct: 178 ENNEIIFEFYGNGFLYNQVRIMVAALLEIGNGKRPVHDFLRLYEVKDRNECRA---TAPA 234
Query: 291 HGLCLVEVKYNEEH 304
GL L +V Y+ E+
Sbjct: 235 SGLYLKKVYYDIEN 248
>gi|160947056|ref|ZP_02094223.1| hypothetical protein PEPMIC_00987 [Parvimonas micra ATCC 33270]
gi|158446190|gb|EDP23185.1| tRNA pseudouridine synthase A [Parvimonas micra ATCC 33270]
Length = 247
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 142/250 (56%), Gaps = 9/250 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I+YDG+ + G+Q Q + T+Q +E AL ++T+ E++ ++ A RTD GVH+ +
Sbjct: 6 LTISYDGSLFFGFQKQKNVVTVQGEIEDALKKITE---ENINIISAGRTDRGVHSLRHII 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T S G+ + ALN LP +RV + FH+RF AK K Y Y + D VMD
Sbjct: 63 NFHTE-SNVGVLNFKTALNHFLPIGVRVLDSKEVSENFHSRFDAKMKTYKYILNLDEVMD 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P +Y + Y L+ M++A EYF+G+ F AF+ + + +NP++ + F++ +
Sbjct: 122 PIYYNYKANFPYPLDIEKMKRAKEYFIGRKSFKAFMGPRTGN--INPIREINSFEIYKEN 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
L ++G F+ QVR MV L+ IG+ I D + +IL ++DR + ++ P+G
Sbjct: 180 NDLIFLIKGQSFIRNQVRIMVGTLVDIGRGLIEEDELERILDSEDR---TRAGVTLSPNG 236
Query: 293 LCLVEVKYNE 302
L L+E+ Y++
Sbjct: 237 LYLMEILYDK 246
>gi|431792241|ref|YP_007219146.1| pseudouridylate synthase I [Desulfitobacterium dichloroeliminans
LMG P-21439]
gi|430782467|gb|AGA67750.1| pseudouridylate synthase I [Desulfitobacterium dichloroeliminans
LMG P-21439]
Length = 244
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 141/251 (56%), Gaps = 11/251 (4%)
Query: 51 WRLVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG+RY GWQ Q TIQ +E L +K+ E++ +VG RTD+GVHA
Sbjct: 4 FKMTISYDGSRYKGWQKQKETDLTIQGKLEAVL---SKMTGEEILVVGCGRTDSGVHAEN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
+A+F T ++ E+I L LP DI V+ I FHAR++ KSK Y YKI +
Sbjct: 61 YIANFHTKSTWKN-EAILYYLYEFLPEDIVVKSIELVDERFHARYNVKSKTYVYKINTNR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ F+R Y+YH L+ MR+AA+ VG HDF +F N++ + + V+++ ++
Sbjct: 120 FRNVFERKYSYHIPEPLDLIEMRKAAQVLVGTHDFQSF-NMKPGKK--STVRTIHSINIA 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E G L++EV G G L+ VR +V L++ G+ + P + K+L + R E A
Sbjct: 177 ENGDHLEIEVNGDGLLWNMVRIIVGSLIEAGRGKLNPSEIEKVLQEKKRWEAGPI---AQ 233
Query: 290 PHGLCLVEVKY 300
GL L EV+Y
Sbjct: 234 AKGLFLREVQY 244
>gi|78045100|ref|YP_361085.1| tRNA pseudouridine synthase A [Carboxydothermus hydrogenoformans
Z-2901]
gi|77997215|gb|ABB16114.1| tRNA pseudouridine synthase A [Carboxydothermus hydrogenoformans
Z-2901]
Length = 246
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 101/256 (39%), Positives = 140/256 (54%), Gaps = 14/256 (5%)
Query: 46 FPGFKWRLVIAYDGTRYAGWQFQ-TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTG 104
P FK L IAYDGT +AG+Q Q +P TIQ I+E+ L ++ K E ++++GA RTD G
Sbjct: 4 LPNFK--LTIAYDGTNFAGFQKQKNTPQTIQGILEEKLHKILK---EPVKVIGAGRTDAG 58
Query: 105 VHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYK 164
VHA GQV +F P+ ++ I LN LP IRV E +FHAR+SA+ K Y Y
Sbjct: 59 VHALGQVVNFSAPWKAP-VDKIPEILNNTLPTAIRVLEAEIVPDDFHARYSARKKEYRYY 117
Query: 165 IYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF 224
+Y PF YA+ KL+ + +A EY +G HDFS F + + NP+K++F
Sbjct: 118 LYYGPP-SPFYERYAWALPQKLDREKVAKALEYLIGTHDFSGFGAAGSSGK--NPIKTMF 174
Query: 225 RFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
E G L FLY+ R + L++IG P+ V +IL T ++K K
Sbjct: 175 EASYREDGFLGYFTFVADSFLYKMARILTGTLVEIGLNG-HPERVREILTTGNKKLAGK- 232
Query: 285 ALSAPPHGLCLVEVKY 300
+AP HGL LV+V Y
Sbjct: 233 --TAPAHGLFLVKVFY 246
>gi|389843544|ref|YP_006345624.1| pseudouridylate synthase I [Mesotoga prima MesG1.Ag.4.2]
gi|387858290|gb|AFK06381.1| pseudouridylate synthase I [Mesotoga prima MesG1.Ag.4.2]
Length = 252
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 142/254 (55%), Gaps = 10/254 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++ +++YDGT + G+Q Q T+Q E+AL R+ K + GA RTDTGVH +G
Sbjct: 5 RFAAIVSYDGTDFFGFQNQPGLRTVQGKFEEALHRIHKFC---ISSQGAGRTDTGVHGFG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV F + ++ ALN LP D+ VR++ F RF+AK +IYHY I +
Sbjct: 62 QVIAFDSNLDRLEATTMRDALNANLPSDMYVRKVHEVDENFSPRFAAKKRIYHYYIQTSS 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
D F+R + + Y L+ MR+AA +G+HDF+AF ++DR NPV+++ +I
Sbjct: 122 EPDIFRRRFVWWFPYSLDIKSMRRAAVNLLGEHDFAAF-RTGKDDR--NPVRTITAIRII 178
Query: 230 EMGA-LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
++ + VEG FL R VRN+V L+++G ++ + V + L++ DR L +A
Sbjct: 179 RYKPYIILIRVEGISFLKRMVRNIVGTLVKVGTGSVSEESVSEFLSSHDRSTLPG---TA 235
Query: 289 PPHGLCLVEVKYNE 302
PP GL +V ++E
Sbjct: 236 PPQGLVFYKVIFDE 249
>gi|440717190|ref|ZP_20897681.1| tRNA pseudouridine synthase A [Rhodopirellula baltica SWK14]
gi|436437657|gb|ELP31275.1| tRNA pseudouridine synthase A [Rhodopirellula baltica SWK14]
Length = 279
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 137/272 (50%), Gaps = 17/272 (6%)
Query: 41 PTDDSFPGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASR 100
PT+D F L +AYDGT Y GWQ Q +IQ +E+ + L +R++G+ R
Sbjct: 5 PTNDRPRTFH--LTVAYDGTEYCGWQVQPEQRSIQSELERV---IRPLAGRPVRVLGSGR 59
Query: 101 TDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKI 160
TD GVHA GQVA + P ++ A+N LP DIRV+ + FH A K
Sbjct: 60 TDAGVHAIGQVARCVLPVWKADTVALQRAINSKLPNDIRVKAVRETRERFHPIADATGKQ 119
Query: 161 YHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAF--VNVQRND--RL 216
Y Y + DPF + ++ + M+ AA FVG HDF AF +R R
Sbjct: 120 YQYLVQVGGSRDPFANRFVNRVGGPIDHSAMQSAAAKFVGCHDFKAFQGTGAERPSTVRT 179
Query: 217 LNPVKSVFRFDVIEMGALLQ-----LEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPK 271
++ + + R GA L+ E++G GFLY VRN++ +L++G+ P D + +
Sbjct: 180 IHSARWIPRVATGPTGAELEGEHWCFEIDGEGFLYNMVRNLMGTMLEVGRGKKPLDWIDE 239
Query: 272 ILATQDRKELAKYALSAPPHGLCLVEVKYNEE 303
+LA++DRK +APP GL L V Y +E
Sbjct: 240 VLASRDRKMAGP---TAPPQGLFLCRVDYPDE 268
>gi|153939803|ref|YP_001391236.1| tRNA pseudouridine synthase A [Clostridium botulinum F str.
Langeland]
gi|152935699|gb|ABS41197.1| tRNA pseudouridine synthase A [Clostridium botulinum F str.
Langeland]
Length = 246
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 133/250 (53%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQT-SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDG++Y GWQ Q + TIQ +E L +T ED+ L+ + RTDTGVHA Q
Sbjct: 5 KLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTG---EDINLIASGRTDTGVHANMQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T F + I + LP DI V + FH+R + K K Y YKI N
Sbjct: 62 VANFHTTFQ-GSTDEILSYCYEYLPKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNKKF 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
D F R Y+YH L+ M++A Y VG+HDF++F + + + V++++ D+I+
Sbjct: 121 HDVFSRKYSYHVPETLDIEAMKEACTYLVGRHDFASFTAARSKKK--STVRTLYSIDIIK 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+ L GSGFL++ +R + L+++G + V IL +DR+ K +AP
Sbjct: 179 KDGYVNLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILKAEDRR---KAGPTAPS 235
Query: 291 HGLCLVEVKY 300
GL + V Y
Sbjct: 236 QGLFMTSVDY 245
>gi|399889030|ref|ZP_10774907.1| tRNA pseudouridine synthase A [Clostridium arbusti SL206]
Length = 244
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 138/249 (55%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+I YDG Y+GWQ Q + TIQ ++E L +T E +++G+SRTD GVHA G V
Sbjct: 5 KLIIEYDGRNYSGWQIQDNAITIQQVLEDNLRIITG---ECTKVIGSSRTDAGVHARGFV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
+F+T S LN LP DI + + F++RF++K K Y Y I N
Sbjct: 62 GNFLTN-SRIPSNRFENVLNSRLPEDIVILKSEEVELSFNSRFNSKGKTYSYTILNTLQR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
R+Y YH L+ LM +A++ FVG HDF+AF + + + V+++ D++++
Sbjct: 121 PAIGRNYVYHFRRNLDILLMIEASKEFVGTHDFAAFRSSGGSAK--TTVRTISSLDIVKI 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
+ + G GFLY VR ++ L+++G + I P + IL ++DR +++ L PP
Sbjct: 179 DDHIIFTITGDGFLYNMVRIIIGTLIEVGLKRIKPKSIKDILISKDR-DMSGPCL--PPS 235
Query: 292 GLCLVEVKY 300
GLCL +V Y
Sbjct: 236 GLCLEKVYY 244
>gi|313892355|ref|ZP_07825947.1| tRNA pseudouridine synthase A [Dialister microaerophilus UPII
345-E]
gi|329121372|ref|ZP_08249998.1| tRNA pseudouridine synthase A [Dialister micraerophilus DSM 19965]
gi|313119214|gb|EFR42414.1| tRNA pseudouridine synthase A [Dialister microaerophilus UPII
345-E]
gi|327469781|gb|EGF15247.1| tRNA pseudouridine synthase A [Dialister micraerophilus DSM 19965]
Length = 266
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 137/248 (55%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
+ ++YDGT YAG+Q Q + T+Q +EK L ++T + + +RTD GVHA+GQ
Sbjct: 6 ITVSYDGTEYAGFQRQENGFTVQEALEKVLKKLTGVH---TTIYFVARTDAGVHAYGQEC 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
F T S E A+N LLP DIRV + +F R + K Y Y + D ++
Sbjct: 63 TFYTESSIPS-ERFKNAMNSLLPCDIRVLKSKEMYEDFSVRKTNYGKTYAYILSEDKDIN 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
PF R Y +++ KL+ M++ A+ GKHDF++F N +PV+ + +I
Sbjct: 122 PFLRKYVWYTGRKLDLQKMKEVAKVLEGKHDFTSFRG--NNSVPADPVRFINEVRIIRKN 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+L+ + V G GFLY VRNMV + G+ + P+ + +IL +DRK+L ++APP G
Sbjct: 180 SLIFVYVTGEGFLYHMVRNMVGAFVDAGRGIMTPERIKEILKAKDRKKL---GVTAPPQG 236
Query: 293 LCLVEVKY 300
L L++V +
Sbjct: 237 LALLKVYF 244
>gi|163857158|ref|YP_001631456.1| tRNA pseudouridine synthase A [Bordetella petrii DSM 12804]
gi|229557953|sp|A9IRL0.1|TRUA_BORPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|163260886|emb|CAP43188.1| pseudouridylate synthase I [Bordetella petrii]
Length = 268
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 96/252 (38%), Positives = 134/252 (53%), Gaps = 7/252 (2%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L +AYDG+ + GWQ Q T+Q +E AL R ++ L V A RTDTGVHA QV
Sbjct: 6 LGLAYDGSSWQGWQTQPHRQTVQDTLEAALARFAGID-GSLPTVCAGRTDTGVHAAMQVV 64
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
H T ES +N LPP I V+ +FHARFSA+S+ Y Y ++ V
Sbjct: 65 HLDTRLERRA-ESWVRGVNAFLPPSIAVQWAQPVPDDFHARFSARSRTYLYLLWRGRVRP 123
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P A L+ MRQAA +G+HDFS+F + Q R +PV+++ R D+ E G
Sbjct: 124 PLWAGRAGWCFQPLDVQAMRQAASALLGEHDFSSFRSSQCQAR--HPVRTLHRLDIDERG 181
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
L + + FL+ VRN++ LLQIG+ P +P +LA +DR+ LA +A G
Sbjct: 182 PFLVFTLRANAFLHHMVRNLMGALLQIGQGRQPVAWMPAVLAARDRR-LAAPTFAA--DG 238
Query: 293 LCLVEVKYNEEH 304
L L ++Y E+
Sbjct: 239 LYLSAIEYPPEY 250
>gi|388456170|ref|ZP_10138465.1| tRNA pseudouridine synthase A [Fluoribacter dumoffii Tex-KL]
Length = 262
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 141/254 (55%), Gaps = 15/254 (5%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
LV+ YDG+ Y GWQ QT T+Q VE AL +V + +V A RTDTGVHA QV
Sbjct: 5 LVLEYDGSHYHGWQAQTGLHTVQQAVEHALSKVADCP---ISVVCAGRTDTGVHATNQVI 61
Query: 113 HFITPFSYDGLESIHAALNG---LLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
HF D + SI A ++G LP DI V+ EFHAR+SA ++ Y Y IYN
Sbjct: 62 HF----DCDKIRSIRAWIHGANSFLPKDICVKWGKELSEEFHARYSATARRYRYVIYNGP 117
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ R +L+ LM QAA+ +G++DF++F +V+ P++++ + V
Sbjct: 118 IRPALLRSNVTWQYRQLDHRLMHQAAQVLLGENDFTSFRSVECQSN--TPMRNIHKLQVS 175
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+G L+ +++ + FL+ VRN+ +L+ +G P V ++L +DR+ A+ +AP
Sbjct: 176 RLGDLVIIDITANAFLHHMVRNIAGVLIAVGSGKHPVSWVDEVLKAKDRRLGAE---TAP 232
Query: 290 PHGLCLVEVKYNEE 303
+GL LV+V Y +E
Sbjct: 233 AYGLYLVQVTYPQE 246
>gi|407696460|ref|YP_006821248.1| tRNA pseudouridine synthase A [Alcanivorax dieselolei B5]
gi|407253798|gb|AFT70905.1| tRNA pseudouridine synthase A [Alcanivorax dieselolei B5]
Length = 262
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 138/252 (54%), Gaps = 10/252 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSP-PTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
L + YDG+R+ GWQ Q T+Q +E+AL RV + L+ A RTDTGVHA GQV
Sbjct: 6 LAVEYDGSRFHGWQTQADGVRTVQWHLEQALSRVAD---HPVTLICAGRTDTGVHATGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF + + D +++ N LP D+ +R +FHARFSA + Y Y IYN
Sbjct: 63 CHFDSNANRD-MKAWVMGGNRFLPDDVAIRWAVPVSDDFHARFSAFRRCYRYVIYNAGAP 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
R + L+ M AA +G HDF+++ V + +P+K++ R D+ +
Sbjct: 122 PALFRRQVTWNHRPLDVQRMADAARALLGTHDFTSYRCVHCQAK--SPIKTLHRLDIQQR 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G ++ LEVE + FL VRN+ +L+ IG P + ++LA +DR+E ++APP+
Sbjct: 180 GRMIILEVEANAFLMHMVRNIAGVLMAIGAGHQPVEWAAEVLAARDRRE---GGVTAPPY 236
Query: 292 GLCLVEVKYNEE 303
GL LV++ Y +E
Sbjct: 237 GLYLVDIGYPDE 248
>gi|400291243|ref|ZP_10793269.1| tRNA pseudouridine synthase A [Streptococcus ratti FA-1 = DSM
20564]
gi|399920390|gb|EJN93208.1| tRNA pseudouridine synthase A [Streptococcus ratti FA-1 = DSM
20564]
Length = 249
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDGT ++G+Q QT+ T+Q +EK L R+ +++ GA RTD GVHA+G
Sbjct: 3 RYKAIISYDGTDFSGFQRQTNARTVQEEIEKTLFRLNSGTF--VKIHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF D LE + L+ P DI V + FHAR+ SK Y + +
Sbjct: 61 QVIHFDLDEERD-LERLRFGLDTQTPDDIDVIRVDKVSENFHARYCKHSKTYEFLVDLGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P RHYA H Y ++ T + A + G HDF+ F + N ++++ R DV
Sbjct: 120 PKNPLMRHYATHFPYVVDVTAIEAAIKKLRGTHDFTGF--TASGTSVDNKIRTISRADVA 177
Query: 230 EMGA--LLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
G LL G+GFLY+QVRNMV LL+IG +P + + +IL +DR LA +
Sbjct: 178 FDGENQLLIFTFTGNGFLYKQVRNMVGTLLKIGNGRMPVEQIDRILELKDR-HLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E+ Y++
Sbjct: 235 AAGNGLYLKEIIYDK 249
>gi|336323996|ref|YP_004603963.1| tRNA pseudouridine synthase A [Flexistipes sinusarabici DSM 4947]
gi|336107577|gb|AEI15395.1| tRNA pseudouridine synthase A [Flexistipes sinusarabici DSM 4947]
Length = 244
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 139/257 (54%), Gaps = 19/257 (7%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+ + + YDGT +AGWQ Q + T+Q +EKA ++K+ + +++ G+ RTD+GVHA
Sbjct: 2 YNIKCTVEYDGTCFAGWQIQKNARTVQREIEKA---ISKMYKTHIKITGSGRTDSGVHAL 58
Query: 109 GQVAHFITPFSYDGLE-----SIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHY 163
QV F+Y + SI A LN L+ DI ++ A +FHAR SA SK Y Y
Sbjct: 59 NQV------FNYHAMAFIPEASITAGLNSLISDDIVIKNTEYASADFHARKSAISKTYEY 112
Query: 164 KIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSV 223
I N A F R++ +H + + + E F G HDFS+F ++ + NPV+++
Sbjct: 113 IILNTAKPSAFYRNHCWHINDYIYPDALTKILELFEGTHDFSSF--CKKRSMVDNPVRTI 170
Query: 224 FRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAK 283
++ ++G L++E+ GFL+ VRN+V L + ++ + P+I+ + +DR
Sbjct: 171 NSTNIRQIGDFLKIEINADGFLHNMVRNIVGTALHVYRKKLNPEIIKNMFIAKDRSAAGP 230
Query: 284 YALSAPPHGLCLVEVKY 300
+AP GL L +V Y
Sbjct: 231 ---TAPAKGLYLKKVYY 244
>gi|182418813|ref|ZP_02950078.1| tRNA pseudouridine synthase A [Clostridium butyricum 5521]
gi|237666467|ref|ZP_04526452.1| tRNA pseudouridine synthase A [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182377310|gb|EDT74871.1| tRNA pseudouridine synthase A [Clostridium butyricum 5521]
gi|237657666|gb|EEP55221.1| tRNA pseudouridine synthase A [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 244
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 137/249 (55%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L I +DG+ + GWQ Q T+Q ++E+A+ + T E++ + G+SRTD+GVHA +
Sbjct: 5 KLTIEFDGSEFCGWQKQPKGRTVQKVIEEAIFKATG---EEIIINGSSRTDSGVHAKDMI 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F T + G + ALN LP D+ + +FHAR+S+K K Y Y I +
Sbjct: 62 ANFFTNSTIPG-DKFREALNVRLPKDVSIIRSEEVSEDFHARYSSKGKTYSYTIIHRYER 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
F Y YH + L+ MR+A +YF+G HDF AF++ + V+++ + +
Sbjct: 121 VSFGHQYVYHWRHDLDIDNMREACKYFIGTHDFRAFMSP--GSSIKTTVRTITDLHIEQN 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G +++ V GFLY VR +V L+++G + + P+ + I+ +RK + + PP+
Sbjct: 179 GEKIKIFVSADGFLYNMVRIIVGTLIKVGNKKLKPEDIQDIIREGNRK---RAGMVVPPN 235
Query: 292 GLCLVEVKY 300
GL L +V Y
Sbjct: 236 GLVLEKVFY 244
>gi|422822401|ref|ZP_16870594.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK353]
gi|324989944|gb|EGC21886.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK353]
Length = 249
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 137/255 (53%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINK--GQPVVIHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D E + AL+ P DI + +FH+R++ SK Y + +
Sbjct: 61 QVLHFDLPDERDE-EKLRFALDTQTPEDIDFISVERVSDDFHSRYNKHSKTYEFLVDIGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P RHYA H Y L L+ +A G HDF+ F D++ + R+D
Sbjct: 120 PKNPMMRHYATHYPYPLELRLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITDAKVRYD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
L G+GFLY+Q+RNMV LL+IG + +P + + +ILA +DR LA +
Sbjct: 180 AER--NFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDR-HLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 ADPNGLYLKEIRYEE 249
>gi|323350454|ref|ZP_08086117.1| tRNA pseudouridine synthase A [Streptococcus sanguinis VMC66]
gi|322123391|gb|EFX95069.1| tRNA pseudouridine synthase A [Streptococcus sanguinis VMC66]
Length = 249
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 138/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINK--GQPVVIHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D E + AL+ P DI + +FH+R++ SK Y + +
Sbjct: 61 QVLHFDLPEERDE-EKLRFALDTQTPEDIDFISVEQVSDDFHSRYNKHSKTYEFLVDIGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P RHYA H Y L L+ +A G HDF+ F D++ ++ R+D
Sbjct: 120 PKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRYD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
L G+GFLY+Q+RNMV LL+IG + +P + V +ILA +DR LA +
Sbjct: 180 AER--NFLVFTFLGNGFLYKQIRNMVGTLLKIGNKRMPVEQVQRILAEKDR-HLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AGPNGLYLKEIRYEE 249
>gi|153853827|ref|ZP_01995183.1| hypothetical protein DORLON_01174 [Dorea longicatena DSM 13814]
gi|149753577|gb|EDM63508.1| tRNA pseudouridine synthase A [Dorea longicatena DSM 13814]
Length = 244
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 137/251 (54%), Gaps = 11/251 (4%)
Query: 51 WRLVIAYDGTRYAGWQFQ-TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I+YDG+RY GWQ Q T+ TIQ I+E + + KL + + G+ RTD GVHA G
Sbjct: 4 YKLTISYDGSRYQGWQRQATTDNTIQYILEWS---IGKLVGYRVHIDGSGRTDAGVHARG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA YD E + +LN LP DIR+ ++ A FHAR SAK K Y Y I
Sbjct: 61 QVASVKLSKLYDTKE-LKDSLNRYLPEDIRIVKVELAKNGFHARKSAKGKKYEYYIDCRE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
D F R Y YH KL+ MR A +Y +G +F++F + + +P++ + ++
Sbjct: 120 KPDVFSRRYCYHYPEKLDIEAMRDATKYLIGPKNFTSFTD---DKECKDPIRKITNIKIV 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
G +++ G+GFLY VR + LL+IG ++P ++A +DR LA + AP
Sbjct: 177 SSGEKVRITYYGTGFLYHMVRILTGTLLEIGAGKRDASMLPVVIAAEDR-SLAGFL--AP 233
Query: 290 PHGLCLVEVKY 300
GL L +V Y
Sbjct: 234 ARGLFLRKVYY 244
>gi|343525190|ref|ZP_08762145.1| tRNA pseudouridine synthase A [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
gi|418965779|ref|ZP_13517537.1| tRNA pseudouridine synthase A [Streptococcus constellatus subsp.
constellatus SK53]
gi|423069267|ref|ZP_17058054.1| tRNA pseudouridine synthase A [Streptococcus intermedius F0395]
gi|343395460|gb|EGV07998.1| tRNA pseudouridine synthase A [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
gi|355364707|gb|EHG12435.1| tRNA pseudouridine synthase A [Streptococcus intermedius F0395]
gi|383341413|gb|EID19672.1| tRNA pseudouridine synthase A [Streptococcus constellatus subsp.
constellatus SK53]
Length = 249
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 140/256 (54%), Gaps = 12/256 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLV-GASRTDTGVHAW 108
+++ +I+YDG +AG+Q Q ++Q +EK L TK+ R +V GA RTD+GVHA
Sbjct: 3 RYKAIISYDGHDFAGFQRQPHARSVQEEIEKTL---TKINRGKPVIVHGAGRTDSGVHAL 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF P D E + AL+ P DI + +FH+R+ SK Y + +
Sbjct: 60 GQVIHFNLPQKRDE-EKLRFALDTQTPEDIDFISVEEVNEDFHSRYCKHSKTYEFIVDIG 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFR--F 226
+P RHYA H Y L+ +L+ +A E G HDF+ F + N V+++ +
Sbjct: 119 RPKNPMMRHYATHYPYPLDLSLIEEAIEKLEGTHDFTGF--TASGTSVENKVRTITKAYL 176
Query: 227 DVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
D E L G+GFLY+Q+RNMV LL+IG + +P + + +IL ++R LA
Sbjct: 177 DFDEKRNFLIFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIDRILTEKNR-HLA--GP 233
Query: 287 SAPPHGLCLVEVKYNE 302
+A P+GL L E++Y E
Sbjct: 234 TAAPNGLYLKEIRYEE 249
>gi|424836140|ref|ZP_18260797.1| tRNA pseudouridine synthase A [Clostridium sporogenes PA 3679]
gi|365977542|gb|EHN13641.1| tRNA pseudouridine synthase A [Clostridium sporogenes PA 3679]
Length = 246
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 133/251 (52%), Gaps = 10/251 (3%)
Query: 52 RLVIAYDGTRYAGWQFQT-SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDG++Y GWQ Q + TIQ +E L +T ED+ L+G+ RTD GVHA Q
Sbjct: 5 KLYIQYDGSKYNGWQKQKENDNTIQWKIENVLSLMTG---EDINLIGSGRTDAGVHANMQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T F E I LP DI V + FH+R + K K Y YKI N
Sbjct: 62 VANFHTNFQ-GSTEQILNYCYEYLPKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNRKF 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
D F R Y+YH L+ M++A Y VG+HDF++F + + + +++++ D+IE
Sbjct: 121 HDVFSRKYSYHIPEALDIDAMKEACTYLVGRHDFASFTAARSKKK--STIRTLYSIDIIE 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+ + GSGFL++ +R + L+++G + V IL +DR+ K +AP
Sbjct: 179 KNGYVNIVYLGSGFLHKMIRILTGTLIEVGLHNMSTIDVKSILEAKDRR---KAGPTAPS 235
Query: 291 HGLCLVEVKYN 301
GL + V Y+
Sbjct: 236 QGLFMTSVAYD 246
>gi|256830021|ref|YP_003158749.1| tRNA pseudouridine synthase A [Desulfomicrobium baculatum DSM 4028]
gi|256579197|gb|ACU90333.1| tRNA pseudouridine synthase A [Desulfomicrobium baculatum DSM 4028]
Length = 246
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 101/262 (38%), Positives = 133/262 (50%), Gaps = 33/262 (12%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
RL +AY GTRY GWQ Q TIQ +E L R+ E +R+ G+ RTD+GVHA QV
Sbjct: 5 RLTVAYVGTRYQGWQIQGRGETIQGAIEDKLARICG---ELVRVHGSGRTDSGVHALAQV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
AHF P S + ALN +LP DI + E A +FHARFS +SK Y Y ++ +
Sbjct: 62 AHFDVPESKRHI-PWRQALNAMLPDDISILEAREAQDDFHARFSVRSKRYAYTLWTEPRF 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVN----VQRNDRLLNPV------- 220
QR V L+ M QAAE G HDF+AF N ++ R L P+
Sbjct: 121 TMPQRAPFVWPVRGLDFEAMDQAAEVLAGTHDFAAFQNAGTEIKGTVRTLEPIVRAPGTH 180
Query: 221 --KSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDR 278
+ VFRF + GFL + VRN++ LL+++G+ + P V IL DR
Sbjct: 181 SAEWVFRF-------------QADGFLKQMVRNLMGLLVEVGRGGLAPADVRPILEGCDR 227
Query: 279 KELAKYALSAPPHGLCLVEVKY 300
+ K +AP GL L EV Y
Sbjct: 228 R---KAPATAPARGLTLEEVMY 246
>gi|410632593|ref|ZP_11343248.1| tRNA pseudouridine38-40 synthase [Glaciecola arctica BSs20135]
gi|410147830|dbj|GAC20115.1| tRNA pseudouridine38-40 synthase [Glaciecola arctica BSs20135]
Length = 261
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 97/252 (38%), Positives = 136/252 (53%), Gaps = 13/252 (5%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I Y+G Y GWQ Q + ++Q VE+AL T + E ++ V A RTD GVHA QV
Sbjct: 5 LGIEYNGAAYHGWQRQQTVASVQQHVEEAL---TTIANEPIKAVCAGRTDAGVHATCQVV 61
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
HF T Y + LN LP I V+ + EFHARFSA ++ Y Y IYN + +
Sbjct: 62 HFDTNI-YRPDRAWTIGLNRFLPESIAVKWVKNTSDEFHARFSATARRYRYVIYNHRLRN 120
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAF--VNVQRNDRLLNPVKSVFRFDVIE 230
+ H +L+ LM QAA++ +G+HDFSAF V+ Q N PV+ + +V
Sbjct: 121 SILPNGVTHIHNELDHELMHQAAQHLIGRHDFSAFRAVDCQAN----TPVRQMSYINVSR 176
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G + ++V+ + FL+ VRN+ LL IGK+ P + +L +DR K A +A P
Sbjct: 177 FGDYILIDVKANAFLHHMVRNITGSLLTIGKKEKPTTWMKTLLQGKDR---TKAASTAKP 233
Query: 291 HGLCLVEVKYNE 302
+GL LV V Y E
Sbjct: 234 NGLYLVHVTYPE 245
>gi|315221272|ref|ZP_07863195.1| tRNA pseudouridine synthase A [Streptococcus anginosus F0211]
gi|315189631|gb|EFU23323.1| tRNA pseudouridine synthase A [Streptococcus anginosus F0211]
Length = 249
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 137/257 (53%), Gaps = 14/257 (5%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L ++ + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGHGFAGFQRQLHARSVQEEIEKTLTKINS--GASVVIHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P DG E + AL+ P DI + FH+R+ SK Y + +
Sbjct: 61 QVIHFDLPQKRDG-EKLRFALDTQTPEDIDFISVEEVNEAFHSRYCKHSKTYEFIVDIGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAF----VNVQRNDRLLNPVKSVFR 225
+P R+YA H Y L+ +L+ +A E G HDF+ F +V+ R + + VF
Sbjct: 120 PKNPMMRYYATHYPYPLDLSLIEEAIEKLEGTHDFTGFTASGTSVENKIRTITEARLVFD 179
Query: 226 FDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
E L G+GFLY+Q+RNMV LL+IG +P + + +IL +DR LA
Sbjct: 180 ----EKRNFLMFTFSGNGFLYKQIRNMVGTLLKIGNGRMPVEQIDRILTEKDR-HLA--G 232
Query: 286 LSAPPHGLCLVEVKYNE 302
+A P+GL L E++Y E
Sbjct: 233 PTAAPNGLYLKEIRYEE 249
>gi|15675714|ref|NP_269888.1| tRNA pseudouridine synthase A [Streptococcus pyogenes SF370]
gi|19746822|ref|NP_607958.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS8232]
gi|50914971|ref|YP_060943.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS10394]
gi|71904268|ref|YP_281071.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS6180]
gi|71911430|ref|YP_282980.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS5005]
gi|94989250|ref|YP_597351.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS9429]
gi|94993138|ref|YP_601237.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS2096]
gi|94995068|ref|YP_603166.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS10750]
gi|139473113|ref|YP_001127828.1| tRNA pseudouridine synthase A [Streptococcus pyogenes str.
Manfredo]
gi|209560051|ref|YP_002286523.1| tRNA pseudouridine synthase A [Streptococcus pyogenes NZ131]
gi|383480586|ref|YP_005389480.1| tRNA pseudouridine synthase A protein TruA [Streptococcus pyogenes
MGAS15252]
gi|383494567|ref|YP_005412243.1| tRNA pseudouridine synthase A protein TruA [Streptococcus pyogenes
MGAS1882]
gi|410681281|ref|YP_006933683.1| tRNA pseudouridine synthase A [Streptococcus pyogenes A20]
gi|417856135|ref|ZP_12501194.1| tRNA pseudouridine synthase A [Streptococcus pyogenes HKU
QMH11M0907901]
gi|54039783|sp|P65851.1|TRUA_STRP8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|54042088|sp|P65850.1|TRUA_STRP1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|62901238|sp|Q5XA03.1|TRUA_STRP6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|122986813|sp|Q1J4W4.1|TRUA_STRPF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|122986985|sp|Q1JF09.1|TRUA_STRPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|123257716|sp|Q1J9W8.1|TRUA_STRPB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|123258127|sp|Q1JK16.1|TRUA_STRPC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|123775214|sp|Q48RE4.1|TRUA_STRPM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|166229842|sp|A2RCK6.1|TRUA_STRPG RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|238057736|sp|B5XIG6.1|TRUA_STRPZ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|13622931|gb|AAK34609.1| putative tRNA pseudouridine synthase A [Streptococcus pyogenes M1
GAS]
gi|19749059|gb|AAL98457.1| putative tRNA pseudouridine synthase A [Streptococcus pyogenes
MGAS8232]
gi|50904045|gb|AAT87760.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS10394]
gi|71803363|gb|AAX72716.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS6180]
gi|71854212|gb|AAZ52235.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS5005]
gi|94542758|gb|ABF32807.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS9429]
gi|94544702|gb|ABF34750.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS10270]
gi|94546646|gb|ABF36693.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS2096]
gi|94548576|gb|ABF38622.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS10750]
gi|134271359|emb|CAM29579.1| tRNA pseudouridine synthase A [Streptococcus pyogenes str.
Manfredo]
gi|209541252|gb|ACI61828.1| tRNA pseudouridine synthase A [Streptococcus pyogenes NZ131]
gi|378928576|gb|AFC66782.1| tRNA pseudouridine synthase A protein TruA [Streptococcus pyogenes
MGAS15252]
gi|378930294|gb|AFC68711.1| tRNA pseudouridine synthase A protein TruA [Streptococcus pyogenes
MGAS1882]
gi|387933090|gb|EIK41203.1| tRNA pseudouridine synthase A [Streptococcus pyogenes HKU
QMH11M0907901]
gi|395454673|dbj|BAM31012.1| tRNA pseudouridine synthase A [Streptococcus pyogenes M1 476]
gi|409693870|gb|AFV38730.1| tRNA pseudouridine synthase A [Streptococcus pyogenes A20]
Length = 249
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 137/253 (54%), Gaps = 10/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDGT ++G+Q Q T+Q +EK L ++ + + + GA RTD GVHA+G
Sbjct: 3 RYKATISYDGTLFSGFQRQRHLRTVQEEIEKTLYKLNNGTK--IIIHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + +E + AL+ P DI V I +FH R+ K Y + + N
Sbjct: 61 QVIHFDLPQEQE-VEKLRFALDTQTPEDIDVVNIEKVADDFHCRYQKHLKTYEFLVDNGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P RHY H Y LN LM++A VG HDF+ F + N V+++ + V
Sbjct: 120 PKNPMMRHYTTHYPYTLNIKLMQEAINGLVGTHDFTGFTAA--GTSVQNKVRTITKATVS 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E L G+GFLY+QVRNMV LL+IG +P + V IL++++R +LA +S
Sbjct: 178 RDEKTDFLVFTFSGNGFLYKQVRNMVGTLLKIGNGQMPVEQVKVILSSKNR-QLAGPTIS 236
Query: 288 APPHGLCLVEVKY 300
+GL L E+ Y
Sbjct: 237 G--NGLYLKEICY 247
>gi|423071227|ref|ZP_17060002.1| tRNA pseudouridine synthase A [Streptococcus intermedius F0413]
gi|355364589|gb|EHG12321.1| tRNA pseudouridine synthase A [Streptococcus intermedius F0413]
Length = 276
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 137/255 (53%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK LI++ E+ + + GA RTD+GVHA G
Sbjct: 30 RYKAIISYDGHDFAGFQRQPHERSVQEEIEKTLIKINNGEQ--VVIHGAGRTDSGVHALG 87
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D E + AL+ P DI + +FH+R+ SK Y + +
Sbjct: 88 QVIHFDLPQKRDE-EKLRFALDTQTPEDIDFISVEEVDDKFHSRYRKHSKTYEFIVDIGR 146
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF--RFD 227
+P RHYA H Y + LM +A G HDF+ F + N V+++ R +
Sbjct: 147 PKNPMMRHYATHYPYPFDLKLMEKAIVKLEGTHDFTGF--TASGTSVENKVRTITRARLE 204
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E L G+GFLY+Q+RNMV LL+IG +P + + +IL QDR LA +
Sbjct: 205 FDENRNFLIFTFSGNGFLYKQIRNMVGTLLKIGNGRMPVEQIDRILIEQDR-HLA--GPT 261
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 262 AAPNGLYLKEIRYEE 276
>gi|335998536|ref|ZP_08564447.1| tRNA pseudouridine synthase A [Lactobacillus ruminis SPM0211]
gi|347524814|ref|YP_004831562.1| tRNA pseudouridine synthase [Lactobacillus ruminis ATCC 27782]
gi|335348391|gb|EGM49897.1| tRNA pseudouridine synthase A [Lactobacillus ruminis SPM0211]
gi|345283773|gb|AEN77626.1| tRNA pseudouridine synthase [Lactobacillus ruminis ATCC 27782]
Length = 250
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 137/254 (53%), Gaps = 9/254 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ +AYDGT +AG+Q Q + T+Q ++E A+ +++K + + + G+ RTD GVHA G
Sbjct: 4 RYKITLAYDGTNFAGFQVQPNQRTVQSVLEAAVNKMSK-NSDYITIYGSGRTDAGVHALG 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P E + LN +LP D V +FHARF+ K Y Y++
Sbjct: 63 QVVHFDFPHDIPA-EGMLKGLNSMLPLDCEVVGCEIVPNDFHARFTTHGKRYMYRVSRGR 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF+R Y H Y L+ +++A VG HDFS+F V + N V++++ V
Sbjct: 122 FTNPFKRFYTGHYKYPLDIEKIKEAMPDLVGTHDFSSF--VASGSQTKNHVRTIYEATVR 179
Query: 230 E--MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E + E G+GFLY QVR MVA LL+IG P ++ +DR E + +
Sbjct: 180 EDKENDEIIFEFCGNGFLYNQVRIMVATLLEIGNGKRPVHDFLRLYEVKDRNECRE---T 236
Query: 288 APPHGLCLVEVKYN 301
AP GL L EV Y+
Sbjct: 237 APASGLYLKEVYYD 250
>gi|168180502|ref|ZP_02615166.1| tRNA pseudouridine synthase A [Clostridium botulinum NCTC 2916]
gi|182668817|gb|EDT80795.1| tRNA pseudouridine synthase A [Clostridium botulinum NCTC 2916]
Length = 246
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 133/250 (53%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQT-SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDG++Y GWQ Q + TIQ +E L +T ED+ L+ + RTDTGVHA Q
Sbjct: 5 KLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTG---EDINLIASGRTDTGVHANMQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T F E ++ LP DI V + FH+R + K K Y YKI N
Sbjct: 62 VANFHTTFQGSTDEILNYCYE-YLPKDIVVYDAFHVNERFHSRLNVKKKKYTYKICNKKF 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
D F R Y+YH L+ M++A Y VG+HDF++F + + + V++++ D+I+
Sbjct: 121 HDVFSRKYSYHIPETLDINAMKEACTYLVGRHDFASFTAARSKKK--STVRTLYSIDIIK 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+ L GSGFL++ +R + L+++G + V IL +DR+ K +AP
Sbjct: 179 KDGYVDLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILKAEDRR---KAGPTAPS 235
Query: 291 HGLCLVEVKY 300
GL + V Y
Sbjct: 236 QGLFMTSVDY 245
>gi|306826655|ref|ZP_07459958.1| tRNA pseudouridine synthase A [Streptococcus pyogenes ATCC 10782]
gi|304431103|gb|EFM34109.1| tRNA pseudouridine synthase A [Streptococcus pyogenes ATCC 10782]
Length = 249
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 137/253 (54%), Gaps = 10/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDGT ++G+Q Q T+Q +EK L ++ + + + GA RTD GVHA+G
Sbjct: 3 RYKATISYDGTLFSGFQRQRHLRTVQEEIEKTLYKLNNGTK--IIIHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + +E + AL+ P DI V I +FH R+ K Y + + N
Sbjct: 61 QVIHFDLPQEQE-VEKLRFALDTQTPEDIDVVNIKKVADDFHCRYQKHLKTYEFLVDNGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P RHY H Y LN LM++A VG HDF+ F + N V+++ + V
Sbjct: 120 PKNPMMRHYTTHYPYTLNIKLMQEAINGLVGTHDFTGFTAA--GTSVQNKVRTITKATVS 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E L G+GFLY+QVRNMV LL+IG +P + V IL++++R +LA +S
Sbjct: 178 RDEKTDFLVFTFSGNGFLYKQVRNMVGTLLKIGNGQMPVEQVKVILSSKNR-QLAGPTIS 236
Query: 288 APPHGLCLVEVKY 300
+GL L E+ Y
Sbjct: 237 G--NGLYLKEICY 247
>gi|32472096|ref|NP_865090.1| tRNA pseudouridine synthase A [Rhodopirellula baltica SH 1]
gi|42559754|sp|Q7TU07.1|TRUA_RHOBA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|32397468|emb|CAD72774.1| tRNA pseudouridine synthase A [Rhodopirellula baltica SH 1]
Length = 276
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 133/260 (51%), Gaps = 15/260 (5%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L +AYDGT Y GWQ Q +IQ +E+ + L +R++G+ RTD GVHA GQVA
Sbjct: 12 LTVAYDGTEYCGWQVQPEQRSIQSELERV---IRPLAGRPVRVLGSGRTDAGVHAIGQVA 68
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+ P ++ A+N LP DIRV+ + FH A K Y Y + D
Sbjct: 69 RCVLPVWKADTVALQRAINSKLPNDIRVKAVRETRERFHPIADATGKQYQYLVQVGGSRD 128
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAF--VNVQRND--RLLNPVKSVFRFDV 228
PF + ++ + M+ AA FVG+HDF AF +R R ++ + + R
Sbjct: 129 PFANRFVNRVGGPIDHSAMQSAAAKFVGRHDFKAFQGTGAERPSTVRTIHSARWIPRVAT 188
Query: 229 IEMGALLQ-----LEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAK 283
GA L+ E++G GFLY VRN++ +L++G+ P+ + ++LA++DRK
Sbjct: 189 GPTGAELEGEHWCFEIDGEGFLYNMVRNLMGTMLEVGRGKKSPNWIDEVLASRDRKMAGP 248
Query: 284 YALSAPPHGLCLVEVKYNEE 303
+APP GL L V Y +E
Sbjct: 249 ---TAPPQGLFLCRVDYPDE 265
>gi|424788383|ref|ZP_18215138.1| tRNA pseudouridine(38-40) synthase [Streptococcus intermedius BA1]
gi|422112886|gb|EKU16648.1| tRNA pseudouridine(38-40) synthase [Streptococcus intermedius BA1]
Length = 249
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 138/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK LI++ ++ + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGHDFAGFQRQPHERSVQEEIEKTLIKINSGKQ--VVIHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D E + AL+ P DI + +FH+R+ SK Y + +
Sbjct: 61 QVIHFDLPQKRDE-EKLRFALDTQTPEDIDFISVEEVDDKFHSRYRKHSKTYEFIVDIGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFR--FD 227
+P RHYA H Y L+ LM +A G HDF+ F + N V+++ R +
Sbjct: 120 PKNPMMRHYATHYPYPLDLKLMEKAIVKLEGTHDFTGF--TASGTSVENKVRTITRAGLE 177
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E L G+GFLY+Q+RNMV LL+IG +P + + +IL QDR LA +
Sbjct: 178 FDENRNFLIFTFSGNGFLYKQIRNMVGTLLKIGNGRMPVEQIDRILIEQDR-HLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AAPNGLYLKEIRYEE 249
>gi|425057402|ref|ZP_18460821.1| tRNA pseudouridine synthase A [Enterococcus faecium 504]
gi|403040550|gb|EJY51621.1| tRNA pseudouridine synthase A [Enterococcus faecium 504]
Length = 246
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 138/250 (55%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDG RY+GWQ TIQ +EK L ++T E++ ++G+ RTD G HA GQ
Sbjct: 5 KLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTN---EEIEIIGSGRTDAGTHARGQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T GL + +N LP DI ++ I FH+R++A K Y Y ++N+ +
Sbjct: 62 VANFKTNTEI-GLAEMIDFMNRYLPRDIVIKRIEEMPERFHSRYNAVGKKYSYYVWNNVI 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
F+R+Y+++ +L+ + A E VG HDF F ++++ + + V+++ +
Sbjct: 121 PSAFERNYSFYFPQELDMDKLNAACEKLVGTHDFIGFSALKKSKK--STVRTIDELSIER 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G +L G GFLY+ VR ++ LL+IG A+P + + +I ++ R+ + + P
Sbjct: 179 KGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPIETIDEIFESKVRQHAGE---TVPA 235
Query: 291 HGLCLVEVKY 300
GL L EV Y
Sbjct: 236 QGLFLDEVYY 245
>gi|315925222|ref|ZP_07921436.1| tRNA pseudouridine synthase A [Pseudoramibacter alactolyticus ATCC
23263]
gi|315621456|gb|EFV01423.1| tRNA pseudouridine synthase A [Pseudoramibacter alactolyticus ATCC
23263]
Length = 249
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 129/255 (50%), Gaps = 15/255 (5%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
LVIAY GTRYAGWQ Q + +I + A+ VT E + L GA RTD GVHA GQ A
Sbjct: 6 LVIAYKGTRYAGWQRQQNAVSIDETIGDAIAAVTG---ERVTLYGAGRTDAGVHARGQRA 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T + ALN LP DIR+++ +FH+R+ AK K Y Y+++ V D
Sbjct: 63 NFKTRVRMPA-DRFAPALNAHLPRDIRIQKSFEVPADFHSRYGAKEKTYCYRVWAAPVAD 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI--- 229
P + +H + LN MR+ A VG HDF F+ + +V R D I
Sbjct: 122 PLTDDFCWHVRFPLNVDAMRRGAAVLVGTHDFKTFMASGSGAK-----TTVRRIDAIGIE 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G ++ G+GFLY VR + L+++G P+ + ILA + R +AP
Sbjct: 177 QKGRMITFTFCGTGFLYNMVRIIAGTLVEMGSGRRDPESMAAILAAKGRTAAGA---TAP 233
Query: 290 PHGLCLVEVKYNEEH 304
GL L V Y EE+
Sbjct: 234 ARGLTLEAVAYGEEN 248
>gi|417304429|ref|ZP_12091450.1| tRNA pseudouridine synthase A [Rhodopirellula baltica WH47]
gi|327539206|gb|EGF25829.1| tRNA pseudouridine synthase A [Rhodopirellula baltica WH47]
Length = 276
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 133/260 (51%), Gaps = 15/260 (5%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L +AYDGT Y GWQ Q +IQ +E+ + L +R++G+ RTD GVHA GQVA
Sbjct: 12 LTVAYDGTEYCGWQVQPEQRSIQSELERV---IRPLAGRPVRVLGSGRTDAGVHAIGQVA 68
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+ P ++ A+N LP DIRV+ + FH A K Y Y + D
Sbjct: 69 RCVLPAWKANTVALQRAINSKLPNDIRVKAVRETRERFHPIADATGKQYQYLVQVGGSRD 128
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAF--VNVQRND--RLLNPVKSVFRFDV 228
PF + ++ + M+ AA FVG+HDF AF +R R ++ + + R
Sbjct: 129 PFANRFVNRVGGPIDHSAMQSAAAKFVGRHDFKAFQGTGAERPSTVRTIHLARWIPRVAT 188
Query: 229 IEMGALLQ-----LEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAK 283
GA L+ E++G GFLY VRN++ +L++G+ P D + ++LA++DRK
Sbjct: 189 GPTGAELEGEHWCFEIDGEGFLYNMVRNLMGTMLEVGRGKKPLDWIDEVLASRDRKMAGP 248
Query: 284 YALSAPPHGLCLVEVKYNEE 303
+APP GL L V Y +E
Sbjct: 249 ---TAPPQGLFLCRVDYPDE 265
>gi|71280165|ref|YP_270466.1| tRNA pseudouridine synthase A [Colwellia psychrerythraea 34H]
gi|123760979|sp|Q47XK4.1|TRUA_COLP3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|71145905|gb|AAZ26378.1| tRNA pseudouridine synthase A [Colwellia psychrerythraea 34H]
Length = 259
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 140/262 (53%), Gaps = 10/262 (3%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
++ L I YDG Y GWQ Q + T+Q +EKAL +K+ E + +V A RTDTGV+A
Sbjct: 1 MRYALGIEYDGKNYCGWQRQNNVITVQEKLEKAL---SKIADEKIEVVCAGRTDTGVNAT 57
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
QV HF T + +N LP D+ V + +FHARFSA ++ Y Y IYN
Sbjct: 58 NQVIHFDTEKKRKDT-AWTLGVNTHLPSDVAVAWVKKVDDDFHARFSATARNYRYIIYNK 116
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
+ H H + L+ LM+Q A+Y +GKHDF++F V + V+++ V
Sbjct: 117 PLRSAILSHGISHCHFALDENLMQQGADYLLGKHDFTSFRTVHCQSH--SAVRTIKHCRV 174
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
G L ++++ + FL+ VRN+V L+++G+ P + ++L ++R ++A
Sbjct: 175 TRQGDYLVVDIKANAFLHHMVRNVVGSLMRVGQSQETPHWMKEVLLAKNR---CVAGVTA 231
Query: 289 PPHGLCLVEVKYNEEHLRLPAA 310
PP GL V+V Y E+ LP +
Sbjct: 232 PPEGLYFVDVDY-PENFELPKS 252
>gi|336112827|ref|YP_004567594.1| tRNA pseudouridine synthase A [Bacillus coagulans 2-6]
gi|335366257|gb|AEH52208.1| tRNA pseudouridine synthase A [Bacillus coagulans 2-6]
Length = 245
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 133/249 (53%), Gaps = 8/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ ++YDG+R+AG+Q Q T+Q +EKAL + K ++ + RTD GVHA GQV
Sbjct: 5 KCTVSYDGSRFAGYQVQPGQRTVQQEIEKALAALHK--GRPVKTAASGRTDAGVHAMGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF T S S AALN LLP DI V + A P FHAR+S K K Y Y+IY V
Sbjct: 63 VHFDTDLSIPET-SWPAALNSLLPGDISVSAAAYAGPGFHARYSVKEKEYRYRIYFSHVR 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
PF+ YA + L+T M AA +G HDF++F + + + V+++ +
Sbjct: 122 SPFKHRYALRVWFPLDTGAMEAAANAVLGTHDFTSFCSAKTEAE--DRVRTLKEIRFLRQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L + +G+GFLY VR + LL+IG P + +IL ++R K +APP
Sbjct: 180 DDELVICFKGNGFLYNMVRILTGTLLEIGSGKREPGEMREILEKRNRIYAGK---TAPPE 236
Query: 292 GLCLVEVKY 300
GL L +V Y
Sbjct: 237 GLYLWKVTY 245
>gi|293380407|ref|ZP_06626478.1| tRNA pseudouridine synthase A [Lactobacillus crispatus 214-1]
gi|290923090|gb|EFE00022.1| tRNA pseudouridine synthase A [Lactobacillus crispatus 214-1]
Length = 262
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 143/255 (56%), Gaps = 9/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ +AYDG + G+Q Q T+Q +E AL ++TK +R + + G+ RTD GVHA G
Sbjct: 4 RYKMTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGKR--VIVQGSGRTDAGVHAVG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + A+N ++P DI +FHAR+S K K Y Y++ D
Sbjct: 62 QVIHFDYPGKTIPANRMILAMNSMMPTDIIFNNCQIVNDDFHARYSIKGKWYRYRVSLDH 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
++PF+R Y H Y L+ M+ AA+ +GKHDF++F ++ + V++++ +
Sbjct: 122 FVNPFKRFYTGHFPYPLDIEKMQIAAQDLLGKHDFTSF--AASGGQIEDKVRTIYYVKIT 179
Query: 230 E--MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E + + GSGFLY VR MVA LL+IG + P + +++A +DR+E+ + +
Sbjct: 180 EDKKDNEVIFDFIGSGFLYNMVRIMVAALLEIGNDRRPVHDLQRVIAAKDRQEVRQ---T 236
Query: 288 APPHGLCLVEVKYNE 302
A GL L V Y+E
Sbjct: 237 AHASGLYLYHVFYDE 251
>gi|374307823|ref|YP_005054254.1| tRNA pseudouridine synthase A [Filifactor alocis ATCC 35896]
gi|291166165|gb|EFE28211.1| tRNA pseudouridine synthase A [Filifactor alocis ATCC 35896]
Length = 244
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 144/249 (57%), Gaps = 11/249 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I Y GT Y GWQ Q + +IQ +E+A+ VT + + L G+ RTD+GVHA GQVA
Sbjct: 7 LKIQYIGTNYCGWQKQNNGKSIQQEIERAICEVTG---KQVNLTGSGRTDSGVHALGQVA 63
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F+ + +E I A+N LP DIR+ E A FHAR+S+K K Y Y+I + +
Sbjct: 64 NFVIDTTIP-VEKIKYAINYYLPDDIRIIESKAVEDSFHARYSSKKKTYCYRINMNEIES 122
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
PF+++ +Y +L+ + M++ +++ +G+HDF+AF + + V++++ ++ +
Sbjct: 123 PFEKNRSYFVGKELDLSKMKEQSKFLMGEHDFAAFQS--EGSSVKTTVRTIYSLEINCIN 180
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ ++ + G+GFLY VR + L++IGK + IL T+ R+ +AP G
Sbjct: 181 NIAEIHIIGNGFLYNMVRIIAGTLIEIGKGKDYS--IVDILNTKQRENAGP---TAPACG 235
Query: 293 LCLVEVKYN 301
L + +V+Y+
Sbjct: 236 LFMEKVEYD 244
>gi|430853073|ref|ZP_19470803.1| tRNA pseudouridine synthase A [Enterococcus faecium E1258]
gi|430540895|gb|ELA81072.1| tRNA pseudouridine synthase A [Enterococcus faecium E1258]
Length = 247
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 138/250 (55%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDG RY+GWQ TIQ +EK L ++T E++ ++G+ RTD G HA GQ
Sbjct: 5 KLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTN---EEIEIIGSGRTDAGTHARGQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T GL + +N LP DI ++ I FH+R++A K Y Y ++ND +
Sbjct: 62 VANFKTNTEI-GLAEMIDFMNRYLPRDIVIKRIEEMPERFHSRYNAVGKKYSYYVWNDVI 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
F+R+++++ +L+ + A E VG HDF F ++++ + + V+++ +
Sbjct: 121 PSAFERNHSFYFPQELDMDKLNAACEKLVGTHDFIGFSALKKSKK--STVRTIDELSIER 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G +L G GFLY+ VR ++ LL+IG A+P + + +I ++ R+ + + P
Sbjct: 179 KGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPIETIDEIFESKVRQHAGE---TVPA 235
Query: 291 HGLCLVEVKY 300
GL L EV Y
Sbjct: 236 QGLFLDEVYY 245
>gi|363897192|ref|ZP_09323731.1| tRNA pseudouridine synthase A [Oribacterium sp. ACB7]
gi|361958689|gb|EHL11986.1| tRNA pseudouridine synthase A [Oribacterium sp. ACB7]
Length = 250
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 136/254 (53%), Gaps = 11/254 (4%)
Query: 51 WRLVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L+++YDG+RY G++ Q TIQ +E L + + + + + A RTD GVHA G
Sbjct: 5 YKLLLSYDGSRYFGFERQKDQELTIQGKLEAVLTAMPRNDTDRVETFSAGRTDAGVHARG 64
Query: 110 QVAHFI--TPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
H T FS E I N LP DI V + A FHAR+ A KIY Y +
Sbjct: 65 MCCHVFLDTDFSE---EEIQNYCNHYLPEDIAVHSLKKASERFHARYLATGKIYRYSCHT 121
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
+ F+R Y YH + + M++AAE+ +G+ DF +F + + + V+ +F D
Sbjct: 122 GKNKEVFERKYLYHLEEEPDIAAMQKAAEFLIGEKDFKSFCGNPKMKK--STVRKIFNID 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ + G++L+ GSGFL Q+R MV LL++G + V +IL +DR + +
Sbjct: 180 IKKNGSVLRFYFHGSGFLQYQIRIMVGTLLEVGFHKRKAEEVEEILLAKDR---TRAGYT 236
Query: 288 APPHGLCLVEVKYN 301
AP GLCL++V+Y+
Sbjct: 237 APAKGLCLMKVEYD 250
>gi|297618350|ref|YP_003703509.1| tRNA pseudouridine synthase A [Syntrophothermus lipocalidus DSM
12680]
gi|297146187|gb|ADI02944.1| tRNA pseudouridine synthase A [Syntrophothermus lipocalidus DSM
12680]
Length = 244
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 137/251 (54%), Gaps = 9/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ + ++ Y+GTRY+G+Q Q TI+ +E A + KL E ++++ A RTD GVHA G
Sbjct: 3 RIKALVEYEGTRYSGFQRQPRGLTIEGELEAA---ICKLTGERVKVLAAGRTDAGVHALG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV F T S E ALN +LP DIRV + A FH R+ A++K Y Y IY
Sbjct: 60 QVIAFDTE-SPIPPERFAPALNSVLPSDIRVLKSEKAKEGFHPRYQARAKAYRYLIYRQE 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
F R+ AY+ L+ M +AA Y G HDF AF R N V++VF +
Sbjct: 119 EGRTFYRNLAYYYPQPLDLPAMAKAARYMEGTHDFMAFCASGSGVR--NYVRTVFEVSIN 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E LQ++V G GFLY VR MV LL++G++ + P+ V +IL ++DR+ + + P
Sbjct: 177 EKPPFLQIDVCGDGFLYNMVRIMVGTLLEVGRKRLAPEEVEQILLSRDRQ---RAGPTVP 233
Query: 290 PHGLCLVEVKY 300
GL L V Y
Sbjct: 234 ACGLYLKRVFY 244
>gi|168184901|ref|ZP_02619565.1| tRNA pseudouridine synthase A [Clostridium botulinum Bf]
gi|237795344|ref|YP_002862896.1| tRNA pseudouridine synthase A [Clostridium botulinum Ba4 str. 657]
gi|182672019|gb|EDT83980.1| tRNA pseudouridine synthase A [Clostridium botulinum Bf]
gi|229263868|gb|ACQ54901.1| tRNA pseudouridine synthase A [Clostridium botulinum Ba4 str. 657]
Length = 246
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 133/250 (53%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQT-SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDG++Y GWQ Q + TIQ +E L +T ED+ L+ + RTDTGVHA Q
Sbjct: 5 KLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTG---EDINLIASGRTDTGVHANMQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T F E ++ LP DI V + FH+R + K K Y YKI N
Sbjct: 62 VANFHTTFQGSTDEILNYCYE-YLPKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNKKF 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
D F R Y+YH L+ M++A Y VG+HDF++F + + + V++++ D+I+
Sbjct: 121 HDVFSRKYSYHIPETLDINAMKEACTYLVGRHDFASFTAARSKKK--STVRTLYSIDIIK 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+ L GSGFL++ +R + L+++G + V IL +DR+ K +AP
Sbjct: 179 KDGYVDLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILEAEDRR---KAGPTAPS 235
Query: 291 HGLCLVEVKY 300
GL + V Y
Sbjct: 236 QGLFMTSVDY 245
>gi|336430072|ref|ZP_08610028.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336001243|gb|EGN31388.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 256
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 139/262 (53%), Gaps = 20/262 (7%)
Query: 51 WRLVIAYDGTRYAGWQFQ----------TSPP-TIQCIVEKALIRVTKLEREDLRLVGAS 99
+++V+ Y+GTRY GWQ Q SP TIQ +E+ L R+ + + + G+
Sbjct: 4 FKIVLQYEGTRYKGWQKQGKGEGDSSSSASPENTIQGKLERLLSRIAG---KPVEIQGSG 60
Query: 100 RTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSK 159
RTD GVHA+GQVA+F + D E++ +N LP DI V + FH+R +AKSK
Sbjct: 61 RTDAGVHAYGQVANFHMD-TDDTSEALMEKINSYLPEDIGVISVEEVPERFHSRLNAKSK 119
Query: 160 IYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNP 219
Y Y++ N AV F+R Y Y L+ MR+AA G HDF AF + ++ + +
Sbjct: 120 TYRYRVLNSAVPHIFERRYVYQVPEHLDMEAMRRAAILLTGSHDFKAFTSAKKGKK--ST 177
Query: 220 VKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRK 279
V++V + +G + G+GFLY VR ++ LL++G A P+ + IL + R+
Sbjct: 178 VRTVDSIQIDRVGEEIHFTFSGNGFLYHMVRILMGTLLEVGTGAKKPEDMTAILESGSRE 237
Query: 280 ELAKYALSAPPHGLCLVEVKYN 301
P GL L+EV+Y+
Sbjct: 238 CAGPL---VPACGLALMEVRYS 256
>gi|170760365|ref|YP_001787307.1| tRNA pseudouridine synthase A [Clostridium botulinum A3 str. Loch
Maree]
gi|169407354|gb|ACA55765.1| tRNA pseudouridine synthase A [Clostridium botulinum A3 str. Loch
Maree]
Length = 246
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 133/250 (53%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQT-SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDG++Y GWQ Q + TIQ +E L +T ED+ L+ + RTDTGVHA Q
Sbjct: 5 KLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTG---EDINLIASGRTDTGVHANMQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T F E ++ LP DI V + FH+R + K K Y YKI N
Sbjct: 62 VANFHTTFQGSTDEILNYCYE-YLPKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNKKF 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
D F R Y+YH L+ M++A Y VG+HDF++F + + + V++++ D+I+
Sbjct: 121 HDVFSRKYSYHIPETLDINAMKEACTYLVGRHDFASFTAARSKKK--STVRTLYSIDIIK 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+ L GSGFL++ +R + L+++G + V IL +DR+ K +AP
Sbjct: 179 KDGYVDLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILEVEDRR---KAGPTAPS 235
Query: 291 HGLCLVEVKY 300
GL + V Y
Sbjct: 236 QGLFMTSVDY 245
>gi|392530584|ref|ZP_10277721.1| tRNA pseudouridine synthase A [Carnobacterium maltaromaticum ATCC
35586]
Length = 272
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 140/256 (54%), Gaps = 10/256 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ I YDGT Y+G+Q Q T+Q +EKAL +TK ++L + RTD GVHA G
Sbjct: 5 RYKVTIQYDGTNYSGFQIQPKDRTVQGDIEKALKTMTK--GIAIKLQASGRTDAGVHALG 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV H+ P + E + ALN L +I + ++ FHAR+ K Y Y++ +
Sbjct: 63 QVIHYDYP-AMIPPERMQQALNSLTTDEIAIVKVEIVDETFHARYFTAEKTYQYRVNTNQ 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
V+DPF+R+YA H Y ++ ++ A VG+HDFS+F V+ N V++++ DV
Sbjct: 122 VVDPFRRNYALHHPYPVHLDDLKAALTDIVGEHDFSSFCAVKSGRE--NKVRTIYEADVT 179
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E L G+GFLY VR ++ LLQI P + +I+A +DR++ +
Sbjct: 180 WNEATGDLIFTFRGNGFLYNMVRILIGTLLQIANGRRPVHDLARIIAAKDRQQAGP---T 236
Query: 288 APPHGLCLVEVKYNEE 303
A P GL L++V Y +
Sbjct: 237 ASPSGLYLLKVTYKSQ 252
>gi|86156809|ref|YP_463594.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-C]
gi|85773320|gb|ABC80157.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-C]
Length = 264
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 136/251 (54%), Gaps = 12/251 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+LV+ YDGT Y GWQ Q + P+IQ VE+AL + K R R+ A RTD GVHA GQV
Sbjct: 24 KLVLEYDGTAYVGWQVQPNGPSIQAEVERALATLHKAPR---RVTAAGRTDAGVHARGQV 80
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F +++ +N +LPPD+ VR S F AR SA+ K Y Y I N
Sbjct: 81 ASFREDRPLP-VKAYVMGMNAVLPPDVAVRAASLEPDGFDARRSARGKRYRYVIENLPTR 139
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRND-RLLNPVKSVFRFDVI- 229
P R A+ + L +R+AA + VG+HDF+AF Q D + V+ V R +V+
Sbjct: 140 APLTRLQAWQHFHPLELANVREAAAHLVGRHDFAAF---QAADCACEHAVREVRRLEVLG 196
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E G +++ +E + F+ VRN+V L+++G+ P + +LA DR E +AP
Sbjct: 197 EAGGRIEVVIEATAFVKHMVRNIVGTLVEVGRGRRAPGSMLALLARGDRTEAGP---TAP 253
Query: 290 PHGLCLVEVKY 300
P GL L EV Y
Sbjct: 254 PQGLFLEEVFY 264
>gi|410727996|ref|ZP_11366189.1| pseudouridylate synthase I [Clostridium sp. Maddingley MBC34-26]
gi|410597556|gb|EKQ52167.1| pseudouridylate synthase I [Clostridium sp. Maddingley MBC34-26]
Length = 244
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 134/249 (53%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+I +DG+ + GWQ Q T+Q +E A+ ++T E++ + G+SRTD GVHA V
Sbjct: 5 KLIIEFDGSNFCGWQRQPKGRTVQKTIEDAISKITG---EEILINGSSRTDAGVHAREMV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F T + G + A+N LP D+ + + +FHAR+S+K K Y Y I N
Sbjct: 62 ANFFTSSTIPG-DKFREAINTKLPKDVSIIKSEEVSEDFHARYSSKGKTYSYTIVNRYER 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
Y YH Y LN M +A +YF+G HDF AF++ + V++V + +
Sbjct: 121 LSLGHQYLYHYKYNLNIHEMGKACQYFIGIHDFRAFMS--PGSSIKTTVRNVTELYIEQK 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G +++ + GFLY VR +V L+++G + P+ + I+ +RK + + PP+
Sbjct: 179 GDKIKIFITADGFLYNMVRIIVGTLIKVGSGKLAPEDIENIIVEGNRK---RAGMCVPPN 235
Query: 292 GLCLVEVKY 300
GL L +V Y
Sbjct: 236 GLILEKVFY 244
>gi|160914527|ref|ZP_02076742.1| hypothetical protein EUBDOL_00533 [Eubacterium dolichum DSM 3991]
gi|158433685|gb|EDP11974.1| tRNA pseudouridine synthase A [Eubacterium dolichum DSM 3991]
Length = 252
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 140/253 (55%), Gaps = 9/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ + YDGT YAGWQ Q + +IQ +E AL K+ E + +V + RTD VHA
Sbjct: 3 RYKVTVCYDGTNYAGWQKQDNARSIQEEIECAL---AKINEEAVEIVASGRTDAHVHALA 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF + + + A N LLP DIR+ ++ FHARF A K Y Y I ND
Sbjct: 60 QVFHFDAKKALSDEQWVRAC-NSLLPKDIRILKVEKVSDSFHARFDAVRKRYDYYITND- 117
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
V++PF +Y L+ M++ A F+G HDF++F + + ++R + +K+++R +V
Sbjct: 118 VLNPFLENYMGKDRKSLDVAYMQECANVFIGTHDFTSFTSSKIDER-KSRIKTIYRLEVQ 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ + + EG+ FL VR + +L++ GK + + + ++L +D K +Y SA
Sbjct: 177 QEANAVHIIFEGNAFLRYMVRMLAQVLIEAGKHRLTKEAISQMLEAKD-KHACRYKASA- 234
Query: 290 PHGLCLVEVKYNE 302
+GL LV V Y +
Sbjct: 235 -NGLYLVRVDYQD 246
>gi|152980861|ref|YP_001353856.1| tRNA pseudouridine synthase A [Janthinobacterium sp. Marseille]
gi|189029996|sp|A6T009.1|TRUA_JANMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|151280938|gb|ABR89348.1| tRNA pseudouridine synthase A [Janthinobacterium sp. Marseille]
Length = 271
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/258 (36%), Positives = 137/258 (53%), Gaps = 21/258 (8%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L + YDGT + GWQ Q + T+Q +E AL +K + + V A RTD GVH QV
Sbjct: 10 LGVQYDGTPWQGWQTQLNGLTVQDRLEFAL---SKFTLQTVSTVCAGRTDAGVHGLEQVV 66
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAV------PEFHARFSAKSKIYHYKIY 166
HF T D + S +N LPP I VR + FHARFSA+S++Y Y +Y
Sbjct: 67 HFDTTLERD-MSSWVRGVNTFLPPSIAVRWATEVAHNPDEQDNFHARFSARSRMYQYVLY 125
Query: 167 NDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRF 226
N+ V P A KL+ MR AA++ +G+HDFS F +VQ + +PVKS++
Sbjct: 126 NNPVRSPLLEGKAGWVFRKLDVERMRTAAQHLLGEHDFSTFRSVQCQAK--SPVKSMYSI 183
Query: 227 DVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
+ + G L+ + + FL+ VRN+V L+ +G A PD + ++L +DRK
Sbjct: 184 KIEQRGDLIMFTLHANAFLHHMVRNIVGSLIYVGNGAQQPDWLKELLDGRDRK------F 237
Query: 287 SAP---PHGLCLVEVKYN 301
+AP P GL L ++ Y+
Sbjct: 238 AAPTFMPDGLYLAKIDYD 255
>gi|452852454|ref|YP_007494138.1| tRNA pseudouridine synthase A [Desulfovibrio piezophilus]
gi|451896108|emb|CCH48987.1| tRNA pseudouridine synthase A [Desulfovibrio piezophilus]
Length = 250
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 140/259 (54%), Gaps = 21/259 (8%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
RL +AYDGT ++GWQ Q T+Q +EKAL R+ R+ G+ RTD+GVHA GQV
Sbjct: 5 RLTLAYDGTDFSGWQLQPHDRTVQGDLEKALGRILG---HSPRVHGSGRTDSGVHAMGQV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPE-FHARFSAKSKIYHYKIYNDAV 170
HF P + ALN +LP DIRV E SA VPE FHAR+SA KIY Y +++
Sbjct: 62 CHFDCPPERADI-PWQRALNSMLPTDIRVLE-SARVPEMFHARYSATGKIYEYVLWHTRE 119
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRF--DV 228
QR + ++ +LM A+ +G+HDF+AF NV PVKS R D+
Sbjct: 120 FCLPQRRRFVWACGSVDYSLMLAGADALLGEHDFAAFQNVG------TPVKSTVRTVSDI 173
Query: 229 IEMGALLQLEV----EGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
L + E E +GFL + VRN+V L+ G+ I P V +L + R +A
Sbjct: 174 SFRTGLSEHETVWRFEANGFLKQMVRNIVGCLVACGRGRITPQEVRGLL--KGRNRMAAP 231
Query: 285 ALSAPPHGLCLVEVKYNEE 303
A +APP GL L V Y+ E
Sbjct: 232 A-TAPPQGLSLASVLYSSE 249
>gi|293572050|ref|ZP_06683062.1| tRNA pseudouridine synthase A [Enterococcus faecium E980]
gi|431738808|ref|ZP_19527750.1| tRNA pseudouridine synthase A [Enterococcus faecium E1972]
gi|291607912|gb|EFF37222.1| tRNA pseudouridine synthase A [Enterococcus faecium E980]
gi|430596921|gb|ELB34733.1| tRNA pseudouridine synthase A [Enterococcus faecium E1972]
Length = 246
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 139/250 (55%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDG RY+GWQ TIQ +EK L ++T E++ ++G+ RTD G HA GQ
Sbjct: 5 KLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTN---EEIEIIGSGRTDAGTHARGQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T S GL + +N LP DI ++ I FHAR++A K Y Y ++N+ +
Sbjct: 62 VANFKTN-SEIGLAEMIDFMNRYLPRDIVIKRIEEMPERFHARYNAVGKKYSYYVWNNVI 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
F+R+++++ +L+ + A E +G HDF F ++++ + + V+++ +
Sbjct: 121 PSAFERNHSFYFPQELDMDKLNAACEKLMGTHDFIGFSALKKSKK--STVRTIDELSIER 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G +L G GFLY+ VR ++ LL+IG A+P + + +I ++ R+ + + P
Sbjct: 179 KGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTSAMPIETIDEIFESKVRQHAGE---TVPA 235
Query: 291 HGLCLVEVKY 300
GL L EV Y
Sbjct: 236 QGLFLDEVYY 245
>gi|158520483|ref|YP_001528353.1| tRNA pseudouridine synthase A [Desulfococcus oleovorans Hxd3]
gi|158509309|gb|ABW66276.1| tRNA pseudouridine synthase A [Desulfococcus oleovorans Hxd3]
Length = 252
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 133/256 (51%), Gaps = 20/256 (7%)
Query: 51 WRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+RL+I YDG + GWQ Q T+Q + AL +T + + ++G+ RTD GVHA Q
Sbjct: 5 FRLIIEYDGACFHGWQIQKDLRTVQGEITGALASITG---QAVSVIGSGRTDAGVHAMAQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA FI + ++ ALNG+L DI + + FHAR+SAKSK Y Y+I N +
Sbjct: 62 VASFICDTRLE-PGTLQKALNGILAKDIVIHDCREVSLNFHARYSAKSKTYRYRILNRNL 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFR----- 225
R YA+H L+ M A + +G+HDFS+F +P S R
Sbjct: 121 PAALYRGYAWHIKKPLDLGAMTAALPHILGRHDFSSFEGTG------SPKASSVRHVTAA 174
Query: 226 -FDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
F++ E G L E+ GFL VRN+V L+++G P+ V ILA +DR ++
Sbjct: 175 TFNMAEDG-YLAFEITADGFLKHMVRNIVGTLVEVGLGKKTPEAVADILAAKDR---SRA 230
Query: 285 ALSAPPHGLCLVEVKY 300
+AP HGL LV V Y
Sbjct: 231 GATAPGHGLFLVRVNY 246
>gi|389816155|ref|ZP_10207342.1| tRNA pseudouridine synthase A [Planococcus antarcticus DSM 14505]
gi|388465419|gb|EIM07737.1| tRNA pseudouridine synthase A [Planococcus antarcticus DSM 14505]
Length = 247
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 129/251 (51%), Gaps = 8/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ + IAYDG+ +AG+Q Q T+Q + K L + K E +++V + RTD VHA G
Sbjct: 3 RLKATIAYDGSGFAGYQVQPETRTVQLELMKVLKTIHK--GEVVQVVASGRTDAKVHATG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF T FS + ALN LLP DIRV I FHAR+ K Y YK
Sbjct: 61 QVIHFDTEFSIP-VSGWLKALNVLLPEDIRVSSIEEVDVSFHARYHTTGKTYRYKWDCSG 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
++ PF R++ H L+ MR AA +G HDFS+F N +++ V+++ R D
Sbjct: 120 IISPFTRNHMVHVKQPLDIEAMRTAARALIGTHDFSSFCAA--NTAVIDKVRTIQRLDFE 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E G L + +EGSGFLY VR + L ++G + I+A +R K +A
Sbjct: 178 EHGNELHMIIEGSGFLYNMVRIIAGTLTEVGIGKRKAGELSGIVAAANRDAAGK---TAA 234
Query: 290 PHGLCLVEVKY 300
HGL L V Y
Sbjct: 235 AHGLYLESVTY 245
>gi|22297651|ref|NP_680898.1| tRNA pseudouridine synthase A [Thermosynechococcus elongatus BP-1]
gi|34222849|sp|Q8CWM6.1|TRUA_THEEB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|22293828|dbj|BAC07660.1| tRNA-pseudouridine synthase I [Thermosynechococcus elongatus BP-1]
Length = 284
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/257 (38%), Positives = 142/257 (55%), Gaps = 10/257 (3%)
Query: 48 GFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHA 107
G + L+I Y GT + GWQ Q T+Q ++E+A+ V + +V A RTDTGVHA
Sbjct: 11 GQRLALLIQYQGTHFHGWQRQVGQRTVQEVIEQAIASVVN---HPVSVVAAGRTDTGVHA 67
Query: 108 WGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
GQVAH +T S + LN LP D+ +R +A P++HARFSA + Y Y +Y
Sbjct: 68 AGQVAH-VTVNSPIPVHRWPGILNARLPADVVIRAAAAVPPDWHARFSALWRRYRYTLYT 126
Query: 168 DAVMDPFQRHYAYHSVYK-LNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRF 226
D + F R + +H Y L+ M + VG+H SAF + ++R + V+ V
Sbjct: 127 DPCPNIFLRPWTWHYYYAPLDVAKMAAVLQPLVGRHHLSAF-HRSGSNRAHSWVE-VQAV 184
Query: 227 DVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
GAL+++EV+ SGFLY +R +V LL+Q+G+ P +I Q+++ L KYA
Sbjct: 185 SCQRRGALVEIEVQASGFLYGMMRLLVGLLVQVGQGQRSPASFTEIW-QQEQRHLVKYA- 242
Query: 287 SAPPHGLCLVEVKYNEE 303
APP GLCL+ V Y E
Sbjct: 243 -APPSGLCLLGVGYPES 258
>gi|456013300|gb|EMF46959.1| tRNA pseudouridine synthase A [Planococcus halocryophilus Or1]
Length = 247
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 130/251 (51%), Gaps = 8/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ + IAYDG+ +AG+Q Q T+Q + K L + K + +++V + RTD VHA G
Sbjct: 3 RLKATIAYDGSGFAGYQVQPDSRTVQLELMKVLETIHK--GKVVQVVASGRTDAKVHATG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF T S + ALN LLP DIRV I FHAR+ K Y YK
Sbjct: 61 QVIHFDTELSIP-ISGWLKALNVLLPEDIRVNSIEEVDTSFHARYHTTGKTYRYKWDRSQ 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
++ PF R H LN M+ A++ +G HDFS+F N +++ V++V R D
Sbjct: 120 IISPFTRSLMVHVKQPLNVEAMKNASQAIIGTHDFSSFCAA--NTAVVDKVRTVRRLDFE 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E G L + +EG+GFLY VR + L ++G + + +I+A DR ++AP
Sbjct: 178 EHGNELHMIIEGTGFLYNMVRIIAGTLAEVGMGRRKAEELEEIVAAADRD---AAGITAP 234
Query: 290 PHGLCLVEVKY 300
HGL L V Y
Sbjct: 235 AHGLYLENVMY 245
>gi|256844460|ref|ZP_05549946.1| tRNA pseudouridine synthase A [Lactobacillus crispatus 125-2-CHN]
gi|256613538|gb|EEU18741.1| tRNA pseudouridine synthase A [Lactobacillus crispatus 125-2-CHN]
Length = 262
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 144/255 (56%), Gaps = 9/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ +AYDG + G+Q Q T+Q +E AL ++TK +R +++ G RTD GVHA G
Sbjct: 4 RYKMTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGQRVIVQVSG--RTDAGVHAVG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + A+N ++P DI + FHAR+S K K Y Y++ D
Sbjct: 62 QVIHFDYPGKTIPANRMILAMNSMMPTDIIFDDCQIVDENFHARYSIKGKWYRYRVSLDH 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
++PF+R Y H Y L+ M+ AA+ +GKHDF++F ++ + V++++ ++
Sbjct: 122 FVNPFKRFYTGHFPYPLDIEKMQVAAQDLLGKHDFTSF--AASGGQIEDKVRTIYYINIT 179
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E + + GSGFLY VR MVA LL+IG + P + +++A +DR+E+ + +
Sbjct: 180 KDEKENEVIFDFIGSGFLYNMVRIMVAALLEIGNDRRPIHDLQRVIAAKDRQEVRQ---T 236
Query: 288 APPHGLCLVEVKYNE 302
A GL L V Y+E
Sbjct: 237 AHASGLYLYHVFYDE 251
>gi|262198313|ref|YP_003269522.1| tRNA pseudouridine synthase A [Haliangium ochraceum DSM 14365]
gi|262081660|gb|ACY17629.1| tRNA pseudouridine synthase A [Haliangium ochraceum DSM 14365]
Length = 264
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 131/256 (51%), Gaps = 16/256 (6%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
RLV+ YDGT +GWQ Q + PT+Q VE AL + + +++VGASRTD GVHA GQV
Sbjct: 8 RLVLEYDGTGLSGWQRQNNAPTVQAHVEDAL---SSMLGRAVQIVGASRTDAGVHALGQV 64
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
AHF T S LNG LPP I V + +FHARF ++ K Y Y ++ A
Sbjct: 65 AHFRTGSSIPP-HGFLRGLNGKLPPAIAVVACAEVRADFHARFDSRGKHYRYALHTRAAR 123
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P R A+H L+ M +AA+ +G+ DF AF S R D + +
Sbjct: 124 APLLRERAWHCPRPLDLAAMERAAQAMLGERDFQAF-----RASGCTAKTSRRRVDRVAL 178
Query: 232 ----GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
L+ ++V G+ FL VR M L+ +G + D + IL ++DR + +
Sbjct: 179 SRPAADLIHIDVYGNAFLRNMVRIMAGTLVDVGLGRLAADEISSILDSRDRTCAGR---T 235
Query: 288 APPHGLCLVEVKYNEE 303
AP HGL LVEV Y E
Sbjct: 236 APAHGLTLVEVFYPAE 251
>gi|208779289|ref|ZP_03246635.1| tRNA pseudouridine synthase A [Francisella novicida FTG]
gi|208745089|gb|EDZ91387.1| tRNA pseudouridine synthase A [Francisella novicida FTG]
Length = 258
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 143/253 (56%), Gaps = 15/253 (5%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I Y G Y GWQ Q+ P++Q +EKAL +K+ +++ + A RTDTGVHA Q+
Sbjct: 6 LQIEYFGKNYCGWQRQSHSPSVQEELEKAL---SKIANQNIEVTCAGRTDTGVHATSQIV 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F + + L + +N LLP DI++ + +F++RF+A ++ Y+Y IYN A
Sbjct: 63 NFYSD-AERPLSAWQRGVNALLPQDIKILAVQQVDNDFNSRFTAINRTYNYIIYNSATSS 121
Query: 173 PFQRHYAYHSVYK---LNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
P +A H +++ L+ M QA EY +G+ DFS+F + Q P +++ + + I
Sbjct: 122 PI---FAEHCLWENRELDIYKMNQACEYLLGEQDFSSFRSSQCQSN--TPFRNIQKAEFI 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G+ + EV G+ FL+ +RN+V LL++G P+ + +L +DR + A+ +A
Sbjct: 177 KQGSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAE---TAK 233
Query: 290 PHGLCLVEVKYNE 302
HGL V V+Y E
Sbjct: 234 AHGLYFVGVEYPE 246
>gi|238917621|ref|YP_002931138.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750]
gi|238872981|gb|ACR72691.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750]
Length = 249
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 140/256 (54%), Gaps = 14/256 (5%)
Query: 51 WRLVIAYDGTRYAGWQFQ-TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++I YDGTRY GW+ Q T+ TIQ +E L +T E E ++GA RTD GVHA G
Sbjct: 4 YKMIITYDGTRYYGWEHQPTTDMTIQGKLESVLSAMTGTEVE---VIGAGRTDAGVHAKG 60
Query: 110 QVA--HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
VA H T D I +N LP DI V+E+ A FH+R++A+ K Y Y Y
Sbjct: 61 MVANAHMETKMKED---DICDYMNRYLPEDICVQEVRIASDRFHSRYNAQGKTYCYTCYV 117
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
F R Y KL+ M++AA+ G+HD+++F + + + V+ ++ D
Sbjct: 118 GDKKPVFNRKYVNIIEGKLDVEAMKKAADILTGEHDYASFCGNPKMKK--STVREIYSID 175
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V G+ L L GSGFL VR + LL++G+ P+ + ++L ++R LA +
Sbjct: 176 VSLKGSFLNLTYHGSGFLQYMVRILSGTLLEVGQGKRTPESMYELLEERNR-SLA--GAT 232
Query: 288 APPHGLCLVEVKYNEE 303
AP GLCL++V Y++E
Sbjct: 233 APAKGLCLLKVDYSKE 248
>gi|419706260|ref|ZP_14233789.1| tRNA pseudouridine synthase A [Streptococcus salivarius PS4]
gi|383284007|gb|EIC81942.1| tRNA pseudouridine synthase A [Streptococcus salivarius PS4]
Length = 248
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 138/253 (54%), Gaps = 10/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDGT ++G+Q Q +IQ +EK L+R+ + + GA RTD GVHA+G
Sbjct: 3 RYKAIISYDGTLFSGFQRQPDARSIQEEIEKTLLRLNS--GTPVVVHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + E + L+ P DI + I +FHAR++ SK Y + +
Sbjct: 61 QVIHFDLPQEREP-EKLRFGLDTQCPDDIDIVSIELVSEDFHARYNKHSKTYEFLVDAGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF--RFD 227
+P R+YA H Y L+ LM++AA+ VG HDF+ F + N V+++ R
Sbjct: 120 PKNPMMRNYATHYPYPLSLALMQEAAKDLVGTHDFTGF--TASGTSVENKVRTITQARVS 177
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ E G+GFLY+QVRNMV LL+IG +P V +L ++DR LA +
Sbjct: 178 IDEKTGFYVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQVKTVLESRDRN-LA--GPT 234
Query: 288 APPHGLCLVEVKY 300
A +GL L E+KY
Sbjct: 235 ASGNGLYLKEIKY 247
>gi|392423926|ref|YP_006464920.1| pseudouridylate synthase I [Desulfosporosinus acidiphilus SJ4]
gi|391353889|gb|AFM39588.1| pseudouridylate synthase I [Desulfosporosinus acidiphilus SJ4]
Length = 262
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 138/254 (54%), Gaps = 11/254 (4%)
Query: 52 RLVIAYDGTRYAGWQFQ--TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
RL +AYDGT Y G+Q Q T+ PTIQ +EK R+ + E + + A RTD GVHA G
Sbjct: 5 RLKVAYDGTNYHGFQRQIETAGPTIQGTLEKVWERLVE---EKVTIAMAGRTDAGVHASG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV +F+T + I A N LLP DIR+ +F+AR+SA K Y Y I N
Sbjct: 62 QVVNFLTEARIPE-DKIPKAFNSLLPKDIRILLAEDVPWDFNARWSATWKRYDYHIDNQR 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ + F R Y++H LN + MR+AA++ G+H+F F + + ++++R V
Sbjct: 121 IPEVFTRLYSWHIPVPLNISSMREAAKFLEGRHNFKTFAAAGGDSKTFE--RTLYRCLVR 178
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
L+++ G GFLY VR +V L +G+ I P +P I+ +Q+R++ L AP
Sbjct: 179 ADQDLIRISCVGDGFLYHMVRIIVGTLADVGRGRIMPGEIPGIIESQERRQA---RLIAP 235
Query: 290 PHGLCLVEVKYNEE 303
HGL L V Y E
Sbjct: 236 AHGLFLTHVNYTVE 249
>gi|253681679|ref|ZP_04862476.1| tRNA pseudouridine synthase A [Clostridium botulinum D str. 1873]
gi|416351428|ref|ZP_11681135.1| tRNA pseudouridine synthase A [Clostridium botulinum C str.
Stockholm]
gi|253561391|gb|EES90843.1| tRNA pseudouridine synthase A [Clostridium botulinum D str. 1873]
gi|338196000|gb|EGO88223.1| tRNA pseudouridine synthase A [Clostridium botulinum C str.
Stockholm]
Length = 245
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 135/250 (54%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDGTRY GWQ + TIQ +E L +L E++ L+ + RTD GVHA Q
Sbjct: 5 KLTIQYDGTRYKGWQKLGDADNTIQYKIESVL---NELLGEEVSLIASGRTDAGVHANMQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
+A+F T + ++I LP DI + IS A FH+R++ K KIY Y IYN+ V
Sbjct: 62 IANFKTNSNVTN-DTILKHCYKYLPQDIVITNISDASENFHSRYNVKKKIYTYNIYNNPV 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
D F R Y+YH L+ M++A++ F+G+HDF +F ++ + F +
Sbjct: 121 HDVFTRKYSYHIKETLDIKKMKEASKLFIGEHDFKSFTALKSKKKSTVKTIDSITFKKKD 180
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+++ G+GFLY+ +R +V L+ +G + + + I+ +DR + +AP
Sbjct: 181 NN--IEIIFTGNGFLYKMIRILVGSLINVGLGKLTIEDLQNIMNKKDRSIAPE---TAPA 235
Query: 291 HGLCLVEVKY 300
HGL L EVKY
Sbjct: 236 HGLILTEVKY 245
>gi|21911175|ref|NP_665443.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS315]
gi|28895139|ref|NP_801489.1| tRNA pseudouridine synthase A [Streptococcus pyogenes SSI-1]
gi|386363403|ref|YP_006072734.1| tRNA pseudouridine synthase A [Streptococcus pyogenes Alab49]
gi|421893282|ref|ZP_16323827.1| tRNA pseudouridine synthase A [Streptococcus pyogenes NS88.2]
gi|341958759|sp|P0DD46.1|TRUA_STRP3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|341958760|sp|P0DD47.1|TRUA_STRPQ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|21905386|gb|AAM80246.1| putative tRNA pseudouridine synthase A [Streptococcus pyogenes
MGAS315]
gi|28810384|dbj|BAC63322.1| putative tRNA pseudouridine synthase A [Streptococcus pyogenes
SSI-1]
gi|350277812|gb|AEQ25180.1| tRNA pseudouridine synthase A [Streptococcus pyogenes Alab49]
gi|379980972|emb|CCG27549.1| tRNA pseudouridine synthase A [Streptococcus pyogenes NS88.2]
Length = 249
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 136/253 (53%), Gaps = 10/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDGT ++G+Q Q T+Q +EK L ++ + + + GA RTD GVHA+G
Sbjct: 3 RYKATISYDGTLFSGFQRQRHLRTVQEEIEKTLYKLNNGTK--IIIHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + +E + AL+ P DI V I +FH R+ K Y + + N
Sbjct: 61 QVIHFDLPQEQE-VEKLRFALDTQTPEDIDVVNIEKVADDFHCRYQKHLKTYEFLVDNGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P RHY H Y LN LM+ A VG HDF+ F + N V+++ + V
Sbjct: 120 PKNPMMRHYTTHYPYTLNIKLMQDAINGLVGTHDFTGFTAA--GTSVQNKVRTITKATVS 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E L G+GFLY+QVRNMV LL+IG +P + V IL++++R +LA +S
Sbjct: 178 RDEKTDFLVFTFSGNGFLYKQVRNMVGTLLKIGNGQMPVEQVKVILSSKNR-QLAGPTIS 236
Query: 288 APPHGLCLVEVKY 300
+GL L E+ Y
Sbjct: 237 G--NGLYLKEICY 247
>gi|54294200|ref|YP_126615.1| tRNA pseudouridine synthase A [Legionella pneumophila str. Lens]
gi|62901233|sp|Q5WX34.1|TRUA_LEGPL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|53754032|emb|CAH15505.1| tRNA-pseudouridine synthase I [Legionella pneumophila str. Lens]
Length = 262
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 136/251 (54%), Gaps = 9/251 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
LV+ YDG++Y GWQ QT TIQ VE AL +K+ + +V A RTDTGVHA QV
Sbjct: 5 LVVEYDGSQYHGWQAQTGLHTIQQAVEFAL---SKVADSSISVVCAGRTDTGVHATNQVI 61
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
HF IH A N LP DI V+ FHAR+SA S+ Y Y IYN A+
Sbjct: 62 HFDCEKDRSIRAWIHGA-NSFLPKDICVKWGKEMPENFHARYSAVSRRYRYVIYNGAIRP 120
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
R +L+ LM+Q + +G++DF++F +V+ P++++ + V G
Sbjct: 121 GLLRGNVTWQYRQLDHRLMQQGGQCLLGENDFTSFRSVECQSN--TPMRNIHQLQVTRHG 178
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
L+ L++ + FL+ VRN+ +L+ +G P V +L +DRK A+ +AP +G
Sbjct: 179 DLVVLDITANAFLHHMVRNIAGVLIAVGSGKHPVGWVKDVLNAKDRKLGAE---TAPSYG 235
Query: 293 LCLVEVKYNEE 303
L LV+V Y +E
Sbjct: 236 LYLVQVTYPKE 246
>gi|347520921|ref|YP_004778492.1| tRNA pseudouridine synthase A [Lactococcus garvieae ATCC 49156]
gi|385832284|ref|YP_005870059.1| tRNA pseudouridine synthase A [Lactococcus garvieae Lg2]
gi|343179489|dbj|BAK57828.1| tRNA pseudouridine synthase A [Lactococcus garvieae ATCC 49156]
gi|343181437|dbj|BAK59775.1| tRNA pseudouridine synthase A [Lactococcus garvieae Lg2]
Length = 248
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/252 (36%), Positives = 137/252 (54%), Gaps = 9/252 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++ IAYDGT +AG+Q Q + T+Q +EK L ++ + + L G+ RTD+GVHA
Sbjct: 3 RYMATIAYDGTNFAGFQTQNNQRTVQEEIEKVLTKLNSYQ--TVILHGSGRTDSGVHAHA 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
Q HF D E + AL+ P DI E+ +FH RF+ KIY Y + N
Sbjct: 61 QRIHFDLQGQRDE-ERLRFALDTQTPSDIAFHEVIQVEEDFHVRFNKHEKIYEYFLENSK 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
V PF R Y H YKL+ LMRQA VG HDF+ F + + V+++ + +++
Sbjct: 120 VRSPFYRMYRAHFRYKLDEDLMRQALADLVGTHDFTGF--TASGATVEDKVRTITQAELV 177
Query: 230 EM-GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ + G+GFLY+QVRNM+ +++IG +P + KIL +++R +LA +A
Sbjct: 178 TLDDENYKFIFRGNGFLYKQVRNMMGTVIKIGNGRMPVSQIKKILESKNR-DLA--GPTA 234
Query: 289 PPHGLCLVEVKY 300
P GL L EV Y
Sbjct: 235 APEGLYLKEVIY 246
>gi|258646098|ref|ZP_05733567.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470]
gi|260403476|gb|EEW97023.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470]
Length = 265
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 134/250 (53%), Gaps = 9/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
R+ +AY+GT Y+G+Q Q + T+Q I+E AL ++T + L A+RTD GVHA+GQ
Sbjct: 5 RITLAYEGTAYSGFQRQENSITVQEILETALQKLTGTK---TTLYFAARTDAGVHAYGQE 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
F T S G I A LN LLPPDIRV E +F R + K Y Y + +
Sbjct: 62 CTFYTESSIPGDRFIFA-LNILLPPDIRVTESREVPYDFSVRRNNYGKTYGYLLTEEKDC 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
PF + Y + + KL+ + M +AAE G HDF++F N +PV+++ +I+
Sbjct: 121 PPFFKRYTWQTGRKLDISKMEKAAEVLSGTHDFTSFRG--NNSVPASPVRTIHDIRIIKK 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
+ V G GFLY VRN+ L G + P + +IL +DRK L +AP H
Sbjct: 179 HHFFHIFVTGEGFLYHMVRNIAGALADAGTGKLTPKDLREILEAKDRKFLGA---TAPAH 235
Query: 292 GLCLVEVKYN 301
GLCL++V +
Sbjct: 236 GLCLLKVYFT 245
>gi|374337298|ref|YP_005093999.1| tRNA pseudouridine synthase A [Streptococcus macedonicus ACA-DC
198]
gi|372283399|emb|CCF01576.1| tRNA pseudouridine synthase A [Streptococcus macedonicus ACA-DC
198]
Length = 249
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 141/255 (55%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ I+YDG +AG+Q Q S ++Q +EK L ++ +++ GA RTD+GVHA+G
Sbjct: 3 RYKATISYDGRLFAGFQRQPSERSVQEELEKTLQKLN--SGNPVKVHGAGRTDSGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + D +E + L+ P DI V ++ EFHAR++ SK Y + +
Sbjct: 61 QVVHFDLPQARD-VEKLRFGLDTQSPEDIDVVKVEQVSDEFHARYNKHSKTYEFLVDAGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+P RHYA H Y L+ M++A + VG HDF+ F + N V+++ R V
Sbjct: 120 PKNPMMRHYAMHYPYPLDLISMQEAIKDLVGTHDFTGF--TASGTSVENKVRTITRATVA 177
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ G+GFLY+QVRNMV LL+IG +P + +L +++R +LA +
Sbjct: 178 IDDKTGFFVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQIKTVLESKNR-DLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L EV Y++
Sbjct: 235 AAGNGLYLKEVNYDK 249
>gi|449134302|ref|ZP_21769803.1| tRNA pseudouridine synthase A [Rhodopirellula europaea 6C]
gi|448886932|gb|EMB17320.1| tRNA pseudouridine synthase A [Rhodopirellula europaea 6C]
Length = 276
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 135/264 (51%), Gaps = 15/264 (5%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L +AYDGT Y GWQ Q +IQ +E+ + L +R++G+ RTD GVHA GQVA
Sbjct: 12 LTVAYDGTEYCGWQVQPEQRSIQSELERV---IRPLAGRPVRVLGSGRTDAGVHAIGQVA 68
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+ P ++ A+N LP DIRV+ + FH A K Y Y + D
Sbjct: 69 RCVLPVWKADTVALQRAINSKLPNDIRVKAVRETRERFHPIADATGKQYQYLVQVGGSRD 128
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAF--VNVQRND--RLLNPVKSVFRFDV 228
PF + ++ + M+ AA FVG+HDF AF +R R ++ + + R
Sbjct: 129 PFANRFVNRVGGPIDHSAMQSAAAKFVGRHDFKAFQGTGAERPSTVRTIHSARWIPRVAT 188
Query: 229 IEMGALLQ-----LEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAK 283
GA L+ E++G GFLY VRN++ +L++G+ P + + +LA+ DRK LA
Sbjct: 189 GPTGAELEGEHWCFEIDGEGFLYNMVRNLIGTMLEVGRGKRPLEWIDDVLASGDRK-LA- 246
Query: 284 YALSAPPHGLCLVEVKYNEEHLRL 307
+APP GL L V Y +E +L
Sbjct: 247 -GPTAPPQGLFLCRVDYPDEVFQL 269
>gi|329768896|ref|ZP_08260324.1| tRNA pseudouridine synthase A [Gemella sanguinis M325]
gi|328837259|gb|EGF86896.1| tRNA pseudouridine synthase A [Gemella sanguinis M325]
Length = 262
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 143/258 (55%), Gaps = 16/258 (6%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L+ YDG+RY G+Q Q + T+Q +EK+L K+ ++++R+ + RTD+GVHA+GQV
Sbjct: 5 LICRYDGSRYHGFQIQPNNNTVQEEIEKSL---RKIHKKNVRIYMSGRTDSGVHAYGQVL 61
Query: 113 HFITPFSY--DGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
HF T + DG A+N ++P DIR+ EFH R+++ K Y YK+Y
Sbjct: 62 HFDTDLNIPTDGWVK---AINAMIPKDIRIVSAKVVNDEFHVRYNSIKKTYSYKLYLGRE 118
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI- 229
+DPF +Y + N ++A +YF+G+HDFS+F +N + + V++++ F +
Sbjct: 119 IDPFLINYVGQHKFNFNFDKAKEALKYFIGEHDFSSF--CSKNTSVEDKVRTIYSFKMDR 176
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ ++ E+ G+GFLY VR ++ + + P+ + +ILA +KE +
Sbjct: 177 DNQNDNIINFEITGNGFLYNMVRIIIGTVQDVAAGKYEPEYIQEILA---KKERSFSGPK 233
Query: 288 APPHGLCLVEVKYNEEHL 305
A GL L EV Y+ + +
Sbjct: 234 ADASGLYLKEVLYDNDEV 251
>gi|292670303|ref|ZP_06603729.1| tRNA pseudouridine synthase A [Selenomonas noxia ATCC 43541]
gi|292648034|gb|EFF66006.1| tRNA pseudouridine synthase A [Selenomonas noxia ATCC 43541]
Length = 260
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/255 (39%), Positives = 140/255 (54%), Gaps = 19/255 (7%)
Query: 53 LVIAYDGTRYAGWQFQTSPP--TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
L IAYDGTRY G+Q Q SPP +Q +E AL V E + L A RTD GVHA GQ
Sbjct: 11 LKIAYDGTRYHGFQRQ-SPPVVAVQNALEAALAEVCG---ETVELAAAGRTDAGVHACGQ 66
Query: 111 VAHFITPFSYDG---LESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
V +F T DG E + A+NGLLPPDI V + A +F AR SAK K Y Y++
Sbjct: 67 VVNFFT----DGRIPTERLPRAVNGLLPPDIAVTDAWEAARDFSARHSAKGKAYVYRMEQ 122
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
V +PF R+YA+ L+ MR A VG HD+S+F ++PV+++
Sbjct: 123 CTVPNPFTRNYAWQIFRPLDVEAMRAALAMLVGTHDYSSFRAA--GGAPMSPVRTIDEIR 180
Query: 228 VIEMG-ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
+ + G L + G+GFLY VRN+++ ++ +G+E I +I A +DR+ +
Sbjct: 181 LEDEGEGRLSCYLHGNGFLYHMVRNIMSTVVSVGQERISVGRFAEIFAARDRRLASP--- 237
Query: 287 SAPPHGLCLVEVKYN 301
+AP GL L+ V Y+
Sbjct: 238 TAPACGLYLLHVDYD 252
>gi|227879273|ref|ZP_03997143.1| tRNA pseudouridine synthase A [Lactobacillus crispatus JV-V01]
gi|227861167|gb|EEJ68816.1| tRNA pseudouridine synthase A [Lactobacillus crispatus JV-V01]
Length = 256
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 140/252 (55%), Gaps = 9/252 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
+ +AYDG + G+Q Q T+Q +E AL ++TK +R + + G+ RTD GVHA GQV
Sbjct: 1 MTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGKR--VIVQGSGRTDAGVHAVGQVI 58
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
HF P + A+N ++P DI +FHAR+S K K Y Y++ D ++
Sbjct: 59 HFDYPGKTIPANRMILAMNSMMPTDIIFNNCQIVNDDFHARYSIKGKWYRYRVSLDHFVN 118
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE-- 230
PF+R Y H Y L+ M+ AA+ +GKHDF++F R+ + V++++ + E
Sbjct: 119 PFKRFYTGHFPYPLDIEKMQIAAQDLLGKHDFTSF--AASGGRIEDKVRTIYYVKITEDK 176
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+ + GSGFLY VR MVA LL+IG + P + +++A +DR+E+ + +A
Sbjct: 177 KDNEVIFDFIGSGFLYNMVRIMVAALLEIGNDRRPVHDLQRVIAAKDRQEVRQ---TAHA 233
Query: 291 HGLCLVEVKYNE 302
GL L V Y+E
Sbjct: 234 SGLYLYHVFYDE 245
>gi|336053535|ref|YP_004561822.1| tRNA pseudouridine synthase A [Lactobacillus kefiranofaciens ZW3]
gi|333956912|gb|AEG39720.1| tRNA pseudouridine synthase A [Lactobacillus kefiranofaciens ZW3]
Length = 262
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 142/255 (55%), Gaps = 9/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ ++YDG + G+Q Q T+Q VE AL ++TK +R + + G+ RTD VHA G
Sbjct: 4 RYKMTMSYDGHLFHGFQLQPDQRTVQGTVEDALKKMTKGQR--VIVQGSGRTDASVHALG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + ALN ++P DI + FHAR+S K K Y Y++ D
Sbjct: 62 QVIHFDYPGKAIPANKMILALNSMMPTDIIFTDCQIVDENFHARYSIKGKWYRYRVSLDH 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
++PF+R Y H Y L+ M++A +GKHDF++F ++ + V++++ ++
Sbjct: 122 FVNPFKRFYTGHFPYALDVKKMQEAGRDLLGKHDFTSF--AASGGQIEDKVRTIYYVNIT 179
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E + + GSGFLY VR MVA LL+IG E P + +++A +DR+E+ + +
Sbjct: 180 KDEKENEVIFDFIGSGFLYNMVRIMVAALLEIGNERRPLHDLKRVIAAKDRQEVRQ---T 236
Query: 288 APPHGLCLVEVKYNE 302
A GL L V Y++
Sbjct: 237 AHASGLYLYHVFYDD 251
>gi|422880739|ref|ZP_16927195.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK355]
gi|332366230|gb|EGJ43985.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK355]
Length = 249
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 137/255 (53%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYDFAGFQRQPHARSVQEEIEKTLTRINK--GQPVVIHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D E + AL+ P DI + +FH+R++ SK Y + +
Sbjct: 61 QVLHFDLPEERDE-EKLRFALDTQTPEDIDFIRVEQVSDDFHSRYNKHSKTYEFLVDIGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P RHYA H Y L L+ +A G HDF+ F D++ ++ R+D
Sbjct: 120 PKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRYD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
L G+GFLY+Q+RNMV LL+IG + +P + + +IL +DR LA +
Sbjct: 180 AER--NFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILEEKDRY-LA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AGPNGLYLKEIRYEE 249
>gi|336422209|ref|ZP_08602361.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 5_1_57FAA]
gi|336009119|gb|EGN39117.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 5_1_57FAA]
Length = 244
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 136/251 (54%), Gaps = 11/251 (4%)
Query: 51 WRLVIAYDGTRYAGWQFQ-TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L IAYDG+RY GWQ Q T+ TIQ ++E + + KL + + G+ RTD GVHA G
Sbjct: 4 YKLTIAYDGSRYQGWQRQATTDNTIQFVLEWS---IGKLVGYRVHVDGSGRTDAGVHARG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA YD E + +LN LP DIR+ ++ FHAR SAK K Y Y I
Sbjct: 61 QVASVKLSKLYDTKE-LKDSLNRYLPEDIRIVKVELVKNGFHARKSAKGKKYEYYIDCRE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
D F R Y YH KL+ MR A +Y +G +F++F + + +P++ + ++
Sbjct: 120 KPDVFSRRYCYHYPEKLDIEAMRGAVQYLIGPKNFTSFTD---DKECKDPIRRIINIKIV 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
G +++ G+GFLY VR + LL+IG ++P ++A +DR LA + AP
Sbjct: 177 STGEKVRITYYGTGFLYHMVRILTGTLLEIGTGKRDASMLPVVIAAEDR-SLAGFL--AP 233
Query: 290 PHGLCLVEVKY 300
GL L +V Y
Sbjct: 234 ARGLFLRKVYY 244
>gi|170754451|ref|YP_001781475.1| tRNA pseudouridine synthase A [Clostridium botulinum B1 str. Okra]
gi|429246235|ref|ZP_19209574.1| tRNA pseudouridine synthase A [Clostridium botulinum CFSAN001628]
gi|169119663|gb|ACA43499.1| tRNA pseudouridine synthase A [Clostridium botulinum B1 str. Okra]
gi|428756753|gb|EKX79286.1| tRNA pseudouridine synthase A [Clostridium botulinum CFSAN001628]
Length = 246
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 134/250 (53%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQT-SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDG++Y GWQ Q + TIQ +E L +T ED+ L+ + RTDTGVHA Q
Sbjct: 5 KLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTG---EDINLIASGRTDTGVHANMQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T F E ++ LP DI V + FH+R + K K Y YKI N
Sbjct: 62 VANFHTTFQCSTDEILNYCYE-YLPKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNKKF 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
D F R Y+YH L+ M++A Y VG+HDF++F + + + V++++ D+I+
Sbjct: 121 HDVFSRKYSYHVPETLDIEAMKEACTYLVGRHDFASFTAARSKKK--STVRTLYSIDIIK 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+ + + GSGFL++ +R + L++IG + V IL +DR+ K +AP
Sbjct: 179 KDSYVDIVYLGSGFLHKMIRILTGTLIEIGLHNLKSVDVKIILEAEDRR---KAGPTAPS 235
Query: 291 HGLCLVEVKY 300
GL + V Y
Sbjct: 236 QGLFMTSVDY 245
>gi|134301921|ref|YP_001121890.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis WY96-3418]
gi|421751727|ref|ZP_16188766.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis AS_713]
gi|421753582|ref|ZP_16190573.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis 831]
gi|421757308|ref|ZP_16194190.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis 80700103]
gi|421759167|ref|ZP_16196001.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis 70102010]
gi|424674486|ref|ZP_18111404.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis 70001275]
gi|166228700|sp|A4IXW8.1|TRUA_FRATW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|134049698|gb|ABO46769.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis WY96-3418]
gi|409086848|gb|EKM86961.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis 831]
gi|409087064|gb|EKM87174.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis AS_713]
gi|409091231|gb|EKM91234.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis 70102010]
gi|409092763|gb|EKM92730.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis 80700103]
gi|417434964|gb|EKT89896.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis 70001275]
Length = 258
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 142/253 (56%), Gaps = 15/253 (5%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I Y G Y GWQ Q+ P++Q +EKAL +K+ +++ + A RTDTGVHA Q+
Sbjct: 6 LQIEYFGKNYCGWQRQSHSPSVQESLEKAL---SKIANQNIEVTCAGRTDTGVHATSQIV 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F + + L + +N LLP DI++ + F++RF+A ++ Y+Y IYN A
Sbjct: 63 NFYSN-ADRPLSAWQRGVNALLPQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSATSS 121
Query: 173 PFQRHYAYHSVYK---LNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
P +A H +++ L+ M QA EY +G+ DFS+F + Q P +++ + + I
Sbjct: 122 PI---FAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSN--TPFRNIQKAEFI 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G+ + EV G+ FL+ +RN+V LL++G P+ + +L +DR + A+ +A
Sbjct: 177 KQGSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAE---TAK 233
Query: 290 PHGLCLVEVKYNE 302
HGL V V+Y E
Sbjct: 234 AHGLYFVGVEYPE 246
>gi|435853007|ref|YP_007314326.1| pseudouridylate synthase I [Halobacteroides halobius DSM 5150]
gi|433669418|gb|AGB40233.1| pseudouridylate synthase I [Halobacteroides halobius DSM 5150]
Length = 247
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 141/253 (55%), Gaps = 14/253 (5%)
Query: 52 RLVIAYDGTRYAGWQ---FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+ VIAYDGT Y G+Q QT T+Q +E + +V K +++ ++GASRTD VHA
Sbjct: 5 KCVIAYDGTNYHGFQRQPHQTHVATVQGRLESTIKQVIK---QEVDIIGASRTDADVHAE 61
Query: 109 GQVAHFITPFSY-DGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
GQV + S G S+ ALN LP DI + + + +FHAR+ ++ K Y+Y++Y
Sbjct: 62 GQVFNCYLDCSIPTGKFSL--ALNTRLPNDIVILDTTEVDAKFHARYHSQGKKYYYQVYY 119
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
D PF R+YAYH + L+ ++ A Y GKHDFS+F N +P++++
Sbjct: 120 DQFPSPFLRNYAYHVYHHLDLDAIKDALPYLEGKHDFSSFRAAGCNAS--SPIRTIHNLS 177
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ + L+ + G GFLY+ VR +V L+ +G + P + +ILA +DRK +
Sbjct: 178 MEQKDNLITFSIYGDGFLYKMVRTIVGTLIYVGYGKLAPAQLKEILAAKDRKAAGP---T 234
Query: 288 APPHGLCLVEVKY 300
AP +GL L E+ Y
Sbjct: 235 APGYGLFLEEIYY 247
>gi|54114177|gb|AAV29722.1| NT02FT0202 [synthetic construct]
Length = 258
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 142/253 (56%), Gaps = 15/253 (5%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I Y G Y GWQ Q+ P++Q +EKAL +K+ +++ + A RTDTGVHA Q+
Sbjct: 6 LQIGYFGKNYCGWQRQSHSPSVQEELEKAL---SKIANQNIEVTCAGRTDTGVHATSQIV 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F + + L + +N LLP DI++ + F++RF+A ++ Y+Y IYN A
Sbjct: 63 NFYSN-ADRPLSAWQRGVNALLPQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSATSS 121
Query: 173 PFQRHYAYHSVYK---LNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
P +A H +++ L+ M QA EY +G+ DFS+F + Q P +++ + + I
Sbjct: 122 PI---FAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSN--TPFRNIQKAEFI 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G+ + EV G+ FL+ +RN+V LL++G P+ + +L +DR + A+ +A
Sbjct: 177 KQGSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAE---TAK 233
Query: 290 PHGLCLVEVKYNE 302
HGL V V+Y E
Sbjct: 234 AHGLYFVGVEYPE 246
>gi|451812081|ref|YP_007448535.1| tRNA pseudouridine synthase A [Candidatus Kinetoplastibacterium
galatii TCC219]
gi|451777983|gb|AGF48931.1| tRNA pseudouridine synthase A [Candidatus Kinetoplastibacterium
galatii TCC219]
Length = 263
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 132/248 (53%), Gaps = 8/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
+ I+Y+G + GWQ Q + +Q I+E AL + ++ R+V A RTD GVHA QV
Sbjct: 6 MCISYNGASFCGWQTQLNLCAVQDIIENALYNFSGFKKT--RVVCAGRTDAGVHAVNQVI 63
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
HF T + + +ES +N LP I V+ FHARFSA S+ Y Y IY V
Sbjct: 64 HFDTDLNRE-IESWVRGVNSFLPNSISVKWAQFVDNNFHARFSAISRTYFYIIYCSKVRS 122
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
S Y L+ LMR A ++ VG+HDFS+F + Q + PV++++ D+ G
Sbjct: 123 AIYNELVGWSFYVLDVDLMRNAIDFLVGEHDFSSFRSSQCQSK--TPVRTIYNADINRKG 180
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ + + FL+ +RN+V L+Q+G+ I P + ++L +DR K + P+G
Sbjct: 181 PFIVFSITANAFLHHMIRNIVGSLIQVGRGNIDPIRIKELLLAKDR---TKGFPTFSPNG 237
Query: 293 LCLVEVKY 300
L L+ V+Y
Sbjct: 238 LYLMNVEY 245
>gi|384462255|ref|YP_005674850.1| tRNA pseudouridine synthase A [Clostridium botulinum F str. 230613]
gi|295319272|gb|ADF99649.1| tRNA pseudouridine synthase A [Clostridium botulinum F str. 230613]
Length = 246
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 132/250 (52%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQT-SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDG++Y GWQ Q + TIQ +E L +T ED+ L+ + RTDTGVHA Q
Sbjct: 5 KLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTG---EDINLIASGRTDTGVHANMQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T F + I + LP DI V + FH+R + K K Y YKI N
Sbjct: 62 VANFHTTFQ-GSTDEILSYCYEYLPKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNKKF 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
D F R Y+YH L+ M++A Y VG+HDF++F + + + V++++ D+I+
Sbjct: 121 HDVFSRKYSYHVPETLDIEAMKEACTYLVGRHDFASFTAARSKKK--STVRTLYSIDIIK 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+ L GSGFL++ +R + L+++G + IL +DR+ K +AP
Sbjct: 179 KDGYVNLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDCKNILKAEDRR---KAGPTAPS 235
Query: 291 HGLCLVEVKY 300
GL + V Y
Sbjct: 236 QGLFMTSVDY 245
>gi|156502494|ref|YP_001428559.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|290953826|ref|ZP_06558447.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica URFT1]
gi|423050756|ref|YP_007009190.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica F92]
gi|166228698|sp|A7NCA0.1|TRUA_FRATF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|156253097|gb|ABU61603.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|421951478|gb|AFX70727.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica F92]
Length = 258
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 142/253 (56%), Gaps = 15/253 (5%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I Y G Y GWQ Q+ ++Q +EKAL +K+ +++ + A RTDTGVHA Q+
Sbjct: 6 LQIEYFGKNYCGWQRQSHSLSVQEELEKAL---SKIANQNIEVTCAGRTDTGVHATSQIV 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F + +Y L + +N LLP DI++ + F++RF+A ++ Y+Y IYN A
Sbjct: 63 NFYSN-AYRPLSAWQRGVNALLPQDIKILAVQQVNNNFNSRFTAINRTYNYIIYNSATSS 121
Query: 173 PFQRHYAYHSVYK---LNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
P +A H +++ L+ M QA EY +G+ DFS+F + Q P +++ + + I
Sbjct: 122 PI---FAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSN--TPFRNIQKAEFI 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G+ + EV G+ FL+ +RN+V LL++G P+ + +L +DR + A+ +A
Sbjct: 177 KQGSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAE---TAK 233
Query: 290 PHGLCLVEVKYNE 302
HGL V V+Y E
Sbjct: 234 AHGLYFVGVEYPE 246
>gi|403743648|ref|ZP_10953200.1| tRNA pseudouridine synthase A [Alicyclobacillus hesperidum
URH17-3-68]
gi|403122678|gb|EJY56883.1| tRNA pseudouridine synthase A [Alicyclobacillus hesperidum
URH17-3-68]
Length = 268
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 137/257 (53%), Gaps = 9/257 (3%)
Query: 48 GFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHA 107
G + RLV+AYDG + G+ Q T+Q +E+ L T++ + + G+ RTD GVHA
Sbjct: 10 GNRIRLVVAYDGAGFHGFARQDGLRTVQATLEETL---TRMLSTPIEVHGSGRTDKGVHA 66
Query: 108 WGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
QV HF P+ E + L LP D+ FHARFS K Y Y +Y
Sbjct: 67 RAQVVHFDLPYGPPA-ERMVYVLRRRLPADVIPLWADQVDTGFHARFSVVRKTYRYLLYR 125
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
A + F +++H L MR+AA + +G+HDF++F + V+S++R D
Sbjct: 126 GAAPNLFLYRFSWHVPGVLAVEAMREAAVHLLGRHDFTSFCASATPQE--DKVRSLYRID 183
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+E L +EVEGSGFL VR +V L+++G+ D +P ILA +DR+ + +
Sbjct: 184 FVESPNRLAIEVEGSGFLQYMVRIIVGTLVKVGQGREEADRIPAILAARDRRLAGE---T 240
Query: 288 APPHGLCLVEVKYNEEH 304
APPHGLCL V+Y E+
Sbjct: 241 APPHGLCLWNVEYPPEY 257
>gi|383454380|ref|YP_005368369.1| tRNA pseudouridine synthase A [Corallococcus coralloides DSM 2259]
gi|380734549|gb|AFE10551.1| tRNA pseudouridine synthase A [Corallococcus coralloides DSM 2259]
Length = 266
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 140/254 (55%), Gaps = 9/254 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ +L + Y+GTRY GWQ Q + P+IQ ++ AL ++ ER + + A RTD+GVHA G
Sbjct: 3 RLKLTLEYEGTRYVGWQVQPNGPSIQSTLQDALQKLLGEER--VFVASAGRTDSGVHATG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA F T +++ LN +LPPDI V PEF R ++ K Y Y++ N
Sbjct: 61 QVASFDTQRVLP-MKAYTMGLNSILPPDIAVVAAEEVSPEFDPRRWSRGKRYRYRVSNRR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
P R + L+ MR+AA+ VG+HDFSAF + + + V+ + + V
Sbjct: 120 TRSPLLRTTHWELFAPLDVEAMRRAAQALVGRHDFSAFRAA--DCQAKHAVREIRQVRVE 177
Query: 230 -EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
G + VEG+ FL VRN+V L+++GK P V ++LA+++RK LA ++A
Sbjct: 178 GASGDTVAFVVEGTAFLKHMVRNLVGTLVEVGKGRRPEAWVAEVLASRERK-LA--GVTA 234
Query: 289 PPHGLCLVEVKYNE 302
PP GL + EV Y +
Sbjct: 235 PPQGLVMEEVFYGD 248
>gi|421491892|ref|ZP_15939254.1| TRUA [Morganella morganii subsp. morganii KT]
gi|455739730|ref|YP_007505996.1| tRNA pseudouridine synthase A [Morganella morganii subsp. morganii
KT]
gi|400193652|gb|EJO26786.1| TRUA [Morganella morganii subsp. morganii KT]
gi|455421293|gb|AGG31623.1| tRNA pseudouridine synthase A [Morganella morganii subsp. morganii
KT]
Length = 273
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 141/263 (53%), Gaps = 12/263 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I YDG+RY GWQ Q+ ++Q +EKAL +K+ E + + A RTD GVHA GQV
Sbjct: 17 LGIEYDGSRYYGWQRQSEVASVQGCLEKAL---SKVAAEPVSVFCAGRTDAGVHATGQVV 73
Query: 113 HFITP-FSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF T D ++ +N LPPDI VR + FHARFSA ++ Y Y I+N
Sbjct: 74 HFHTAAVRKDAAWTM--GVNTHLPPDIAVRWVKTVPENFHARFSATARRYRYVIFNHRFR 131
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
H Y L+ M +AA+ +G++DFS+F Q R +P ++V +V
Sbjct: 132 PAILSKGVTHFHYPLDEKRMHEAAQSLLGENDFSSFRAAQCQSR--SPWRNVMHVNVTRQ 189
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G + ++++ + F++ VRN+ LL++G +P + ++LA +DR + +AP
Sbjct: 190 GQYVIVDIKANAFVHHMVRNITGALLEVGCGNLPVSRMAELLALKDRTQAPA---TAPAE 246
Query: 292 GLCLVEVKYNEEH-LRLPAACPL 313
GL LV V Y EE L PA PL
Sbjct: 247 GLYLVSVDYPEEFALPSPAMGPL 269
>gi|422857646|ref|ZP_16904296.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1057]
gi|327462829|gb|EGF09151.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1057]
Length = 249
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 137/255 (53%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINK--GQPVVIHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P D E + AL+ P DI + +FH+R++ SK Y + +
Sbjct: 61 QVLHFDLPEERDE-EKLRFALDTQTPEDIDFIRVERVSDDFHSRYNKHSKTYEFLVDIGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P RHYA H Y L +L+ +A G HDF+ F D++ ++ R D
Sbjct: 120 PKNPMMRHYATHYPYPLELSLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRHD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
L G+GFLY+Q+RNMV L +IG + +P + + +ILA +DR LA +
Sbjct: 180 AER--NFLVFTFSGNGFLYKQIRNMVGTLFKIGNKRMPVEQIQRILAEKDR-HLA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 AGPNGLYLKEIRYEE 249
>gi|52841533|ref|YP_095332.1| tRNA pseudouridine synthase A [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|54297221|ref|YP_123590.1| tRNA pseudouridine synthase A [Legionella pneumophila str. Paris]
gi|148358844|ref|YP_001250051.1| tRNA pseudouridine synthase A [Legionella pneumophila str. Corby]
gi|296106890|ref|YP_003618590.1| tRNA pseudouridine synthase A [Legionella pneumophila 2300/99
Alcoy]
gi|378777168|ref|YP_005185605.1| tRNA pseudouridine synthase A [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|397663737|ref|YP_006505275.1| pseudouridylate synthase I [Legionella pneumophila subsp.
pneumophila]
gi|397666926|ref|YP_006508463.1| pseudouridylate synthase I [Legionella pneumophila subsp.
pneumophila]
gi|62901237|sp|Q5X5Q4.1|TRUA_LEGPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|62901247|sp|Q5ZVY6.1|TRUA_LEGPH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|166228736|sp|A5IBF5.1|TRUA_LEGPC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|52628644|gb|AAU27385.1| tRNA pseudouridine synthase A [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|53751006|emb|CAH12417.1| tRNA-pseudouridine synthase I [Legionella pneumophila str. Paris]
gi|148280617|gb|ABQ54705.1| tRNA pseudouridine synthase A [Legionella pneumophila str. Corby]
gi|295648791|gb|ADG24638.1| tRNA pseudouridine synthase A [Legionella pneumophila 2300/99
Alcoy]
gi|364507982|gb|AEW51506.1| tRNA pseudouridine synthase A [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|395127148|emb|CCD05336.1| pseudouridylate synthase I [Legionella pneumophila subsp.
pneumophila]
gi|395130337|emb|CCD08575.1| pseudouridylate synthase I [Legionella pneumophila subsp.
pneumophila]
Length = 262
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 136/251 (54%), Gaps = 9/251 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
LV+ YDG++Y GWQ QT TIQ VE AL +K+ + +V A RTDTGVHA QV
Sbjct: 5 LVVEYDGSQYHGWQAQTGLHTIQQAVEFAL---SKVADSSISVVCAGRTDTGVHATNQVI 61
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
HF IH A N LP DI V+ FHAR+SA S+ Y Y IYN A+
Sbjct: 62 HFDCEKDRSIRAWIHGA-NTFLPKDICVKWGKEMPENFHARYSAVSRRYRYVIYNGAIRP 120
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
R +L+ LM+Q + +G++DF++F +V+ P++++ + V G
Sbjct: 121 GLLRGNVTWQYRQLDHRLMQQGGQCLLGENDFTSFRSVECQSN--TPMRNIHQLQVTRHG 178
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
L+ L++ + FL+ VRN+ +L+ +G P V +L +DRK A+ +AP +G
Sbjct: 179 DLVVLDITANAFLHHMVRNIAGVLIAVGSGKHPVGWVKDVLNAKDRKLGAE---TAPSYG 235
Query: 293 LCLVEVKYNEE 303
L LV+V Y +E
Sbjct: 236 LYLVQVTYPKE 246
>gi|385331570|ref|YP_005885521.1| tRNA pseudouridine synthase A [Marinobacter adhaerens HP15]
gi|311694720|gb|ADP97593.1| tRNA pseudouridine synthase A [Marinobacter adhaerens HP15]
Length = 302
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 143/293 (48%), Gaps = 9/293 (3%)
Query: 37 TVKPPTDDSFPGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLV 96
T + TD++ + L YDG + GWQ Q S ++ + + V K+ + LV
Sbjct: 5 TQQLSTDNAVGAGRVALAFEYDGRGFHGWQLQKS--GVRSVEAELTAAVAKVANHAVDLV 62
Query: 97 GASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSA 156
A RTD GVHA Q+AHF TP S L S +N LP DI V V +FHARFSA
Sbjct: 63 CAGRTDAGVHASYQIAHFDTP-SVRNLRSWVMGINTALPDDISVHWAGNGVGDFHARFSA 121
Query: 157 KSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRL 216
+ Y Y IYN V QR + L+ M +AA+ G+HDFS+F R
Sbjct: 122 TYRRYRYIIYNHPVRPGIQRGQVSWTFRPLDADRMHRAAQALAGEHDFSSFRAAGCQSR- 180
Query: 217 LNPVKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQ 276
P++ + R V + ++V+ + FL+ VRN+ L+ +G P+ + +IL +
Sbjct: 181 -TPIRFLERISVTRKRDFVVIDVQANAFLHHMVRNIAGALMAVGSGKQRPEWIHEILVAR 239
Query: 277 DRKELAKYALSAPPHGLCLVEVKYNEEHLRLPAACPLSSFGRHHSVRKCKLPF 329
DR ++APPHGL LV+V Y EE +PA F R R+ PF
Sbjct: 240 DRTAA---GVTAPPHGLYLVDVGYPEE-FGIPAVECGPGFLRPWFTREENSPF 288
>gi|257900124|ref|ZP_05679777.1| tRNA pseudouridine synthase [Enterococcus faecium Com15]
gi|257838036|gb|EEV63110.1| tRNA pseudouridine synthase [Enterococcus faecium Com15]
Length = 247
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 139/250 (55%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDG RY+GWQ TIQ +EK L ++T E++ ++G+ RTD G HA GQ
Sbjct: 5 KLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTN---EEIEIIGSGRTDAGTHARGQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T S GL + +N LP DI ++ I FHAR++A K Y Y ++N+ +
Sbjct: 62 VANFKTN-SEIGLAEMIDFMNRYLPRDIVIKRIEEMPERFHARYNAVGKKYSYYVWNNVI 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
F+R+++++ +L+ + A E +G HDF F ++++ + + V+++ +
Sbjct: 121 PSAFERNHSFYFPQELDMDKLNAACEKLMGTHDFIGFSALKKSKK--STVRTIDELSIER 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G +L G GFLY+ VR ++ LL+IG A+P + + +I ++ R+ + + P
Sbjct: 179 KGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPIETIDEIFESKVRQHAGE---TVPA 235
Query: 291 HGLCLVEVKY 300
GL L EV Y
Sbjct: 236 QGLFLDEVYY 245
>gi|210623220|ref|ZP_03293659.1| hypothetical protein CLOHIR_01609 [Clostridium hiranonis DSM 13275]
gi|210153757|gb|EEA84763.1| hypothetical protein CLOHIR_01609 [Clostridium hiranonis DSM 13275]
Length = 243
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 134/249 (53%), Gaps = 10/249 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
++ + Y+G Y GWQ Q + P IQ +E A+ +T E +++ G+ RTD GVHA GQV
Sbjct: 5 KITVQYNGANYCGWQEQPNSPGIQGNIEYAIKEITG---EKVKINGSGRTDAGVHALGQV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F S + I ALN LP DI + + EFHAR+SAK KIY Y +YN
Sbjct: 62 ANFKIE-SQIPVNRIPDALNSKLPKDISIIDAEEVEDEFHARYSAKGKIYKYLVYNSRYR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
+P + +Y Y L+ M++ AE +G +DF F++ + + V+++ + +
Sbjct: 121 NPILKDISYQVKYDLDFEKMKKEAESLIGTYDFCGFMS--SGSSVKDTVRTIKSVKIEKE 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L+ E EG+GFLY VR + L+ IG+ I + I+ +QDR +K +AP H
Sbjct: 179 DDLIVFEFEGNGFLYNMVRILSGTLIDIGRGRITESM-EDIIKSQDR---SKAGHTAPGH 234
Query: 292 GLCLVEVKY 300
L L +V Y
Sbjct: 235 ALFLKKVFY 243
>gi|148379875|ref|YP_001254416.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC
3502]
gi|153930931|ref|YP_001384172.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC
19397]
gi|153935153|ref|YP_001387713.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. Hall]
gi|148289359|emb|CAL83455.1| tRNA pseudouridine synthase [Clostridium botulinum A str. ATCC
3502]
gi|152926975|gb|ABS32475.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC
19397]
gi|152931067|gb|ABS36566.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. Hall]
Length = 246
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 134/250 (53%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQT-SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDG++Y GWQ Q + TIQ +E L +T ED+ L+ + RTDTGVHA Q
Sbjct: 5 KLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTG---EDINLIASGRTDTGVHANMQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T F + I + LP DI V + FH+R + K K Y YKI N
Sbjct: 62 VANFHTTFQ-GSTDEILSYCYEYLPKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNKKF 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
D F R Y+YH L+ M++A Y VG+HDF++F + + + V++++ D+I+
Sbjct: 121 HDVFSRKYSYHVPETLDIEAMKEACTYLVGRHDFASFTAARSKKK--STVRTLYSIDIIK 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+ + + GSGFL++ +R + L++IG + V IL +DR+ K +AP
Sbjct: 179 KDSYVDIVYLGSGFLHKMIRILTGTLIEIGLHNLKSVDVKIILDAEDRR---KAGPTAPS 235
Query: 291 HGLCLVEVKY 300
GL + V Y
Sbjct: 236 QGLFMTSVDY 245
>gi|118497491|ref|YP_898541.1| tRNA pseudouridine synthase A [Francisella novicida U112]
gi|195536184|ref|ZP_03079191.1| tRNA pseudouridine synthase A [Francisella novicida FTE]
gi|254372827|ref|ZP_04988316.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
novicida GA99-3549]
gi|166228699|sp|A0Q6C2.1|TRUA_FRATN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|118423397|gb|ABK89787.1| tRNA pseudouridine synthase A [Francisella novicida U112]
gi|151570554|gb|EDN36208.1| tRNA pseudouridine synthase A [Francisella novicida GA99-3549]
gi|194372661|gb|EDX27372.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
novicida FTE]
Length = 258
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 142/253 (56%), Gaps = 15/253 (5%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I Y G Y GWQ Q+ P++Q +EKAL +K+ +++ + A RTDTGVHA Q+
Sbjct: 6 LQIEYFGRNYCGWQRQSHSPSVQEELEKAL---SKIANQNIEVTCAGRTDTGVHATSQIV 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F + + L + +N LLP DI++ + F++RF+A ++ Y+Y IYN A
Sbjct: 63 NFYSD-AERPLSAWQRGVNALLPQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSATSS 121
Query: 173 PFQRHYAYHSVYK---LNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
P +A H +++ L+ M QA EY +G+ DFS+F + Q P +++ + + I
Sbjct: 122 PI---FAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSN--TPFRNIQKAEFI 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G+ + EV G+ FL+ +RN+V LL++G P+ + +L +DR + A+ +A
Sbjct: 177 KQGSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAE---TAK 233
Query: 290 PHGLCLVEVKYNE 302
HGL V V+Y E
Sbjct: 234 AHGLYFVGVEYPE 246
>gi|358449023|ref|ZP_09159515.1| tRNA pseudouridine synthase A [Marinobacter manganoxydans MnI7-9]
gi|357226818|gb|EHJ05291.1| tRNA pseudouridine synthase A [Marinobacter manganoxydans MnI7-9]
Length = 302
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 144/293 (49%), Gaps = 9/293 (3%)
Query: 37 TVKPPTDDSFPGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLV 96
T + TD++ + L YDG + GWQ Q S ++ + + V K+ + LV
Sbjct: 5 TQQLSTDNAVGAGRVALAFEYDGRGFHGWQLQKS--GVRSVEAELTAAVAKVANHPVDLV 62
Query: 97 GASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSA 156
A RTD GVHA Q+AHF TP S L S +N LP DI V V +FHARFSA
Sbjct: 63 CAGRTDAGVHASYQIAHFDTP-SVRNLRSWVMGINTALPDDISVHWAGNGVGDFHARFSA 121
Query: 157 KSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRL 216
+ Y Y IYN V QR + L+ M +AA+ G+HDFS+F R
Sbjct: 122 TYRRYRYIIYNHPVRPGIQRGQVSWTFRPLDADRMHRAAQALAGEHDFSSFRAAGCQSR- 180
Query: 217 LNPVKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQ 276
P++ + R V + ++V+ + FL+ VRN+ L+ +G P+ + +IL +
Sbjct: 181 -TPIRFLERISVTRKRDFVVIDVQANAFLHHMVRNIAGALMAVGSGKQRPEWIHEILVAR 239
Query: 277 DRKELAKYALSAPPHGLCLVEVKYNEEHLRLPAACPLSSFGRHHSVRKCKLPF 329
DR ++APPHGL LV+V Y +E L +PA F R R+ PF
Sbjct: 240 DRTAA---GVTAPPHGLYLVDVGYPDE-LGIPAVECGPGFLRPWFTREENSPF 288
>gi|440510066|ref|YP_007347502.1| tRNA pseudouridine synthase A [Candidatus Blochmannia chromaiodes
str. 640]
gi|440454279|gb|AGC03771.1| tRNA pseudouridine synthase A [Candidatus Blochmannia chromaiodes
str. 640]
Length = 261
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 135/248 (54%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I YDG+ Y GWQ Q P+IQ +E A+ ++T E + + A RTD+GVHA GQV
Sbjct: 6 LGIEYDGSWYCGWQRQRDVPSIQSYIENAIKKITS---ESVTVFCAGRTDSGVHALGQVV 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
HF T +S+ + +N LP I VR +FHARFSA S+ Y Y I N+ +
Sbjct: 63 HFET-YSWRSKSAWTLGMNRYLPSSICVRWARLVNKDFHARFSAISRRYCYIINNNCIRS 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
+H L+ MR AA+Y +G++DFS+F + + + ++ +I G
Sbjct: 122 ALLFRKTWHYKKYLDINKMRDAAQYLLGENDFSSFRAA--GCQSYSTRRKLYHIRIIRKG 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ ++++ + F+YR VRN+V L+++G P + ++L +R LA ++AP G
Sbjct: 180 QCIVIDIKANSFMYRMVRNIVGSLVKVGCGEQPETWIAELLENCNR-SLA--GVTAPASG 236
Query: 293 LCLVEVKY 300
L LVEVKY
Sbjct: 237 LYLVEVKY 244
>gi|89256403|ref|YP_513765.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica LVS]
gi|115314847|ref|YP_763570.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica OSU18]
gi|254367741|ref|ZP_04983762.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica 257]
gi|422938792|ref|YP_007011939.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica FSC200]
gi|122325138|sp|Q0BLV1.1|TRUA_FRATO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|122999741|sp|Q2A3D7.1|TRUA_FRATH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|89144234|emb|CAJ79507.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica LVS]
gi|115129746|gb|ABI82933.1| tRNA-pseudouridine synthase I [Francisella tularensis subsp.
holarctica OSU18]
gi|134253552|gb|EBA52646.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica 257]
gi|407293943|gb|AFT92849.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica FSC200]
Length = 258
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 142/253 (56%), Gaps = 15/253 (5%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I Y G Y GWQ Q+ ++Q +EKAL +K+ +++ + A RTDTGVHA Q+
Sbjct: 6 LQIEYFGKNYCGWQRQSHSLSVQEELEKAL---SKIANQNIEVTCAGRTDTGVHATSQIV 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F + +Y L + +N LLP DI++ + F++RF+A ++ Y+Y IYN A
Sbjct: 63 NFYSN-AYRPLSAWQRGVNALLPQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSATSS 121
Query: 173 PFQRHYAYHSVYK---LNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
P +A H +++ L+ M QA EY +G+ DFS+F + Q P +++ + + I
Sbjct: 122 PI---FAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSN--TPFRNIQKAEFI 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G+ + EV G+ FL+ +RN+V LL++G P+ + +L +DR + A+ +A
Sbjct: 177 KQGSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAE---TAK 233
Query: 290 PHGLCLVEVKYNE 302
HGL V V+Y E
Sbjct: 234 AHGLYFVGVEYPE 246
>gi|336433571|ref|ZP_08613388.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_58FAA]
gi|336016007|gb|EGN45804.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_58FAA]
Length = 244
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 134/251 (53%), Gaps = 11/251 (4%)
Query: 51 WRLVIAYDGTRYAGWQFQT-SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L IAYDG+RY GWQ Q+ + T+Q ++E+A ++ L + G+ RTD GVHA G
Sbjct: 4 YKLTIAYDGSRYQGWQRQSNTDKTVQGLLEQA---ASETAGYPLEVQGSGRTDGGVHAKG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
Q A I E + +N LLP DIRV E+ FHAR SA K Y Y I
Sbjct: 61 QTASVILRGKVQESEFLQN-MNRLLPLDIRVIEMELVKNGFHARLSAVGKCYEYWIDMRE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
D F R Y YH +LN M++AA+ +G++DF+AF + + + +++++ V
Sbjct: 120 KPDVFMRKYTYHYPKELNIEAMQRAADDLIGRYDFAAFTDKKEEK---STIRTIYAIIVE 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
G L++E GSGF+Y VR + LL++G P+ V LA +DR A AP
Sbjct: 177 VQGDKLRIEYRGSGFMYHMVRILTGTLLEVGDGRRTPESVKAALAGRDR---ADAGFLAP 233
Query: 290 PHGLCLVEVKY 300
GL L EV Y
Sbjct: 234 ARGLTLKEVYY 244
>gi|167759303|ref|ZP_02431430.1| hypothetical protein CLOSCI_01650 [Clostridium scindens ATCC 35704]
gi|167663177|gb|EDS07307.1| tRNA pseudouridine synthase A [Clostridium scindens ATCC 35704]
Length = 244
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 136/251 (54%), Gaps = 11/251 (4%)
Query: 51 WRLVIAYDGTRYAGWQFQ-TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L IAYDG+RY GWQ Q T+ TIQ ++E + + KL + + G+ RTD GVHA G
Sbjct: 4 YKLTIAYDGSRYQGWQRQATTDNTIQFVLEWS---IGKLVGYRVHVDGSGRTDAGVHARG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA YD E + +LN LP DIR+ ++ FHAR SAK K Y Y I
Sbjct: 61 QVASVKLSKLYDTKE-LKDSLNRYLPEDIRIVKVELVKNGFHARKSAKGKKYEYYIDCRE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
D F R Y YH KL+ MR A +Y +G +F++F + + +P++ + ++
Sbjct: 120 KPDVFSRRYCYHYPEKLDIEAMRDAVQYLIGPKNFTSFTD---DKECKDPIRRIINIKIV 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
G +++ G+GFLY VR + LL+IG ++P ++A +DR LA + AP
Sbjct: 177 STGEKVRITYYGTGFLYHMVRILTGTLLEIGTGKRDASMLPVVIAAEDRC-LAGFL--AP 233
Query: 290 PHGLCLVEVKY 300
GL L +V Y
Sbjct: 234 ARGLFLRKVYY 244
>gi|385792860|ref|YP_005825836.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|332678185|gb|AEE87314.1| tRNA pseudouridine synthase A [Francisella cf. novicida Fx1]
Length = 258
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 142/253 (56%), Gaps = 15/253 (5%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I Y G Y GWQ Q+ P++Q +EKAL +K+ +++ + A RTDTGVHA Q+
Sbjct: 6 LQIEYFGKNYCGWQRQSHSPSVQEELEKAL---SKIANQNIEVTCAGRTDTGVHATSQII 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F + + L + +N LLP DI++ + F++RF+A ++ Y+Y IYN A
Sbjct: 63 NFYSD-AERPLSAWQRGVNALLPQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSATSS 121
Query: 173 PFQRHYAYHSVYK---LNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
P +A H +++ L+ M QA EY +G+ DFS+F + Q P +++ + + I
Sbjct: 122 PI---FAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSN--TPFRNIQKAEFI 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G+ + EV G+ FL+ +RN+V LL++G P+ + +L +DR + A+ +A
Sbjct: 177 KQGSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAE---TAK 233
Query: 290 PHGLCLVEVKYNE 302
HGL V V+Y E
Sbjct: 234 AHGLYFVGVEYPE 246
>gi|225164227|ref|ZP_03726501.1| tRNA-pseudouridine synthase I [Diplosphaera colitermitum TAV2]
gi|224801166|gb|EEG19488.1| tRNA-pseudouridine synthase I [Diplosphaera colitermitum TAV2]
Length = 354
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 131/262 (50%), Gaps = 15/262 (5%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+W+ +AYDGT ++GWQ Q IQ +E+ L R+ E +R+ G+ RTD GVHA
Sbjct: 100 RWKCTVAYDGTHFSGWQSQPDGNAIQDHLERRLARMLG---ESVRIHGSGRTDAGVHARA 156
Query: 110 QVAHFITPFSYDGLESIHAALNGL-------LPPDIRVREISAAVPEFHARFSAKSKIYH 162
QV HF + + G E + AA +P I+V + FHARF A K Y
Sbjct: 157 QVFHFDAAWRH-GPERLLAAFRSGGGEGGGGVPSGIQVTDARIVSAAFHARFDATGKRYT 215
Query: 163 YKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKS 222
Y +++ DPF + Y + KL+ MR AA VG+HDF AF + +R V+
Sbjct: 216 YDLHHGGFADPFTQDYCWSIPQKLDVVAMRAAAALLVGRHDFCAFSALSGEERETT-VRH 274
Query: 223 VFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELA 282
+ + D+ GA +++ GFLYR VR +V L+ G + P + +IL+ R
Sbjct: 275 LTQLDISARGARIRITARADGFLYRMVRRLVGALVHAGLGKLTPGDIAQILSEARRTPRI 334
Query: 283 KYALSAPPHGLCLVEVKYNEEH 304
+ +AP HGL L V Y H
Sbjct: 335 E---TAPAHGLFLDRVFYGWGH 353
>gi|431740872|ref|ZP_19529781.1| tRNA pseudouridine synthase A [Enterococcus faecium E2039]
gi|430602507|gb|ELB40071.1| tRNA pseudouridine synthase A [Enterococcus faecium E2039]
Length = 247
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 139/250 (55%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDG RY+GWQ TIQ +EK L ++T E++ ++G+ RTD G HA GQ
Sbjct: 5 KLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTN---EEIEIIGSGRTDAGTHARGQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T S GL + +N LP DI ++ I FHAR++A K Y Y ++N+ +
Sbjct: 62 VANFKTN-SEIGLAEMIDFMNRYLPRDIVIKRIEEMPERFHARYNAVGKKYSYYVWNNVI 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
F+R+++++ +L+ + A E +G HDF F ++++ + + V+++ +
Sbjct: 121 PSAFERNHSFYFPQELDMDKLNAACEKLMGTHDFIGFSALKKSKK--STVRTIDELAIER 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G +L G GFLY+ VR ++ LL+IG A+P + + +I ++ R+ + + P
Sbjct: 179 KGEMLHFTFVGDGFLYKMVRIIIGTLLEIGTGAMPIETIDEIFESKVRQHAGE---TVPA 235
Query: 291 HGLCLVEVKY 300
GL L EV Y
Sbjct: 236 QGLFLDEVYY 245
>gi|227824316|ref|ZP_03989148.1| tRNA pseudouridine synthase A [Acidaminococcus sp. D21]
gi|352683828|ref|YP_004895812.1| tRNA pseudouridine synthase A [Acidaminococcus intestini RyC-MR95]
gi|226904815|gb|EEH90733.1| tRNA pseudouridine synthase A [Acidaminococcus sp. D21]
gi|350278482|gb|AEQ21672.1| tRNA pseudouridine synthase A [Acidaminococcus intestini RyC-MR95]
Length = 253
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 129/251 (51%), Gaps = 10/251 (3%)
Query: 54 VIAYDGTRYAGWQFQTSPPT-IQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
V+AYDGT Y G+Q Q +Q ++EKAL + ED+ + A RTD GVHA GQV
Sbjct: 8 VVAYDGTNYQGFQRQKDYGVGVQQVLEKAL---STALHEDISIKAAGRTDAGVHALGQVI 64
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
F T S E+ AL LLPPDI +RE FHARF A K Y Y + + D
Sbjct: 65 SFETS-SPIPPENYRRALQHLLPPDIAIREAFIKPDGFHARFDALDKTYRYTVLYAPLPD 123
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P R YA+ L M +AA VG HDFS+F N + +PV++++ +
Sbjct: 124 PCARRYAWEVRSSLTLAAMNEAAALLVGTHDFSSFKN--QGSEKTSPVRTLYEAYWTQEK 181
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ G GFLYR VRN+V L+++G ++A +DRK K ++AP G
Sbjct: 182 ERFTFTIRGDGFLYRMVRNIVGCLVKVGTGEWTVADFAAVMAAKDRK---KAGVAAPACG 238
Query: 293 LCLVEVKYNEE 303
L LV V Y EE
Sbjct: 239 LSLVHVSYPEE 249
>gi|430837433|ref|ZP_19455401.1| tRNA pseudouridine synthase A [Enterococcus faecium E0680]
gi|431506669|ref|ZP_19515495.1| tRNA pseudouridine synthase A [Enterococcus faecium E1634]
gi|430487369|gb|ELA64117.1| tRNA pseudouridine synthase A [Enterococcus faecium E0680]
gi|430587056|gb|ELB25289.1| tRNA pseudouridine synthase A [Enterococcus faecium E1634]
Length = 246
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 139/250 (55%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDG RY+GWQ TIQ +EK L ++T E++ ++G+ RTD G HA GQ
Sbjct: 5 KLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTN---EEIEIIGSGRTDAGTHARGQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T GL + +N LP DI ++ I FH+R++A K Y Y ++N+ +
Sbjct: 62 VANFKTNTEI-GLAEMIDFMNRYLPRDIVIKRIEEVPERFHSRYNAVGKKYSYYVWNNVI 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
F+R+++++ +L+ + A E VG HDF F ++++ + + V+++ +
Sbjct: 121 PSAFERNHSFYFPQELDMDKLNAACEKLVGTHDFIGFSALKKSKK--STVRTIDELSIER 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G +L G+GFLY+ VR ++ LL+IG A+P + + +I ++ R+ + + P
Sbjct: 179 KGEMLHFTFVGNGFLYKMVRIIMGTLLEIGTGAMPIETIDEIFESKVRQHAGE---TVPA 235
Query: 291 HGLCLVEVKY 300
GL L EV Y
Sbjct: 236 QGLFLDEVYY 245
>gi|319939850|ref|ZP_08014205.1| tRNA pseudouridine synthase A [Streptococcus anginosus 1_2_62CV]
gi|319810861|gb|EFW07180.1| tRNA pseudouridine synthase A [Streptococcus anginosus 1_2_62CV]
Length = 249
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 139/256 (54%), Gaps = 12/256 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLV-GASRTDTGVHAW 108
+++ +I+YDG +AG+Q Q ++Q +EK L TK+ R +V GA RTD+GVHA
Sbjct: 3 RYKAIISYDGHDFAGFQRQPHARSVQEEIEKTL---TKINRGKPVIVHGAGRTDSGVHAL 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF P D E + AL+ P DI + +FH+R+ SKIY + +
Sbjct: 60 GQVIHFDLPQKRDE-EKLRFALDTQTPEDIDFISVEEVNEDFHSRYWKHSKIYEFIVDVG 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF--RF 226
+P RHYA H Y L+ +L++ A G HDF+ F + N V+++ R
Sbjct: 119 RPKNPMMRHYATHFPYPLDISLIKNAIAKLEGTHDFTGF--TASGTSVENKVRTITEARL 176
Query: 227 DVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
D E L G+GFLY+Q+RNMV LL+IG +P + + +IL ++R LA
Sbjct: 177 DFDEKRNFLIFTFSGNGFLYKQIRNMVGTLLKIGNGRMPVEQIDRILTEKNR-HLA--GP 233
Query: 287 SAPPHGLCLVEVKYNE 302
+A P+GL L E++Y E
Sbjct: 234 TAAPNGLYLKEIRYEE 249
>gi|254374311|ref|ZP_04989793.1| tRNA pseudouridine synthase A [Francisella novicida GA99-3548]
gi|151572031|gb|EDN37685.1| tRNA pseudouridine synthase A [Francisella novicida GA99-3548]
Length = 258
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 142/253 (56%), Gaps = 15/253 (5%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I Y G Y GWQ Q+ P++Q +EKAL +K+ +++ + A RTDTGVHA Q+
Sbjct: 6 LQIEYFGKNYCGWQRQSHSPSVQEELEKAL---SKIANQNIEVTCAGRTDTGVHATSQIV 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F + + L + +N LLP DI++ + F++RF+A ++ Y+Y IYN A
Sbjct: 63 NFYSN-ADRPLSAWQRGVNALLPKDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSATSS 121
Query: 173 PFQRHYAYHSVYK---LNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
P +A H +++ L+ M QA EY +G+ DFS+F + Q P +++ + + I
Sbjct: 122 PI---FAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSN--TPFRNIQKAEFI 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G+ + EV G+ FL+ +RN+V LL++G P+ + +L +DR + A+ +A
Sbjct: 177 KQGSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAE---TAK 233
Query: 290 PHGLCLVEVKYNE 302
HGL V V+Y E
Sbjct: 234 AHGLYFVGVEYPE 246
>gi|257870548|ref|ZP_05650201.1| tRNA pseudouridine synthase [Enterococcus gallinarum EG2]
gi|357049064|ref|ZP_09110293.1| tRNA pseudouridine synthase A [Enterococcus saccharolyticus 30_1]
gi|257804712|gb|EEV33534.1| tRNA pseudouridine synthase [Enterococcus gallinarum EG2]
gi|355384364|gb|EHG31432.1| tRNA pseudouridine synthase A [Enterococcus saccharolyticus 30_1]
Length = 247
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 136/254 (53%), Gaps = 11/254 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ IAYDGT + G+Q Q + T+Q +EK L R+ + +++ G+ RTD GVHA G
Sbjct: 3 RYKATIAYDGTNFQGFQRQPNGRTVQEEIEKTLTRMNN--GQAVQIHGSGRTDAGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF F LE + L+ P DI V+++ FHAR+ + K Y +++
Sbjct: 61 QVIHF--DFDERPLEKMRFGLDTQTPEDIAVKQVEIVDEHFHARYLVREKTYQFRVDIGK 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFR--FD 227
PF+R+YA + Y L+ ++QA +G HDF++F + + V+++ + +
Sbjct: 119 PRSPFRRYYASYYPYPLDLMKIQQALPDLLGTHDFTSFCAT--GSSVEDKVRTIHQASME 176
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V E G L G GFLY+ +R MV LL+IG +P D +P I+A +DR +
Sbjct: 177 VNEAGDELLFTFRGDGFLYKMIRIMVGTLLKIGNGRLPADSIPAIIAQKDRNAAGP---T 233
Query: 288 APPHGLCLVEVKYN 301
A P GL LV V Y
Sbjct: 234 AHPEGLYLVRVAYE 247
>gi|56708110|ref|YP_170006.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670581|ref|YP_667138.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis FSC198]
gi|254370594|ref|ZP_04986599.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis FSC033]
gi|254874909|ref|ZP_05247619.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis MA00-2987]
gi|379717351|ref|YP_005305687.1| tRNA pseudouridine synthase A( ) [Francisella tularensis subsp.
tularensis TIGB03]
gi|379725955|ref|YP_005318141.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis TI0902]
gi|385794775|ref|YP_005831181.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis NE061598]
gi|421755656|ref|ZP_16192598.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis 80700075]
gi|62901197|sp|Q5NG36.1|TRUA_FRATT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|123169371|sp|Q14HI8.1|TRUA_FRAT1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|56604602|emb|CAG45654.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320914|emb|CAL09037.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis FSC198]
gi|151568837|gb|EDN34491.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis FSC033]
gi|254840908|gb|EET19344.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159310|gb|ADA78701.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis NE061598]
gi|377827404|gb|AFB80652.1| tRNA pseudouridine synthase A( ) [Francisella tularensis subsp.
tularensis TI0902]
gi|377829028|gb|AFB79107.1| tRNA pseudouridine synthase A( ) [Francisella tularensis subsp.
tularensis TIGB03]
gi|409087814|gb|EKM87902.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
tularensis 80700075]
Length = 258
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 142/253 (56%), Gaps = 15/253 (5%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I Y G Y GWQ Q+ P++Q +EKAL +K+ +++ + A RTDTGVHA Q+
Sbjct: 6 LQIEYFGKNYCGWQRQSHSPSVQEELEKAL---SKIANQNIEVTCAGRTDTGVHATSQIV 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F + + L + +N LLP DI++ + F++RF+A ++ Y+Y IYN A
Sbjct: 63 NFYSN-ADRPLSAWQRGVNALLPQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSATSS 121
Query: 173 PFQRHYAYHSVYK---LNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
P +A H +++ L+ M QA EY +G+ DFS+F + Q P +++ + + I
Sbjct: 122 PI---FAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSN--TPFRNIQKAEFI 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G+ + EV G+ FL+ +RN+V LL++G P+ + +L +DR + A+ +A
Sbjct: 177 KQGSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAE---TAK 233
Query: 290 PHGLCLVEVKYNE 302
HGL V V+Y E
Sbjct: 234 AHGLYFVGVEYPE 246
>gi|339640162|ref|ZP_08661606.1| tRNA pseudouridine synthase A [Streptococcus sp. oral taxon 056
str. F0418]
gi|339453431|gb|EGP66046.1| tRNA pseudouridine synthase A [Streptococcus sp. oral taxon 056
str. F0418]
Length = 249
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 138/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG +AG+Q Q ++Q +EK L R+ K + + + GA RTD+GVHA G
Sbjct: 3 RYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINK--GQTVVIHGAGRTDSGVHALG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
Q+ HF P D E + AL+ P DI + +FHAR++ SK Y + +
Sbjct: 61 QILHFDLPGERDA-EKLRFALDTQTPADIDFISVERVAEDFHARYNKHSKTYEFLVDIGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRN--DRLLNPVKSVFRFD 227
+P RHYA H Y L L+ +A G HDF+ F + D++ ++ R+D
Sbjct: 120 PKNPMMRHYATHYPYPLELELIEEAIVQLEGTHDFTGFTASGTSVVDKVRTITEAKVRYD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
L G+GFLY+Q+RNMV LL+IG + +P + + +IL ++R LA +
Sbjct: 180 AER--NFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILDEKNRN-LA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A P+GL L E++Y E
Sbjct: 235 ADPNGLYLKEIRYEE 249
>gi|187931655|ref|YP_001891639.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
mediasiatica FSC147]
gi|238691562|sp|B2SGK2.1|TRUA_FRATM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|187712564|gb|ACD30861.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 258
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 142/253 (56%), Gaps = 15/253 (5%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I Y G Y GWQ Q+ P++Q +EKAL +K+ +++ + A RTDTGVHA Q+
Sbjct: 6 LQIEYFGKNYCGWQRQSHSPSVQEELEKAL---SKIANQNIEVTCAGRTDTGVHATSQIV 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F + + L + +N LLP DI++ + F++RF+A ++ Y+Y IYN A
Sbjct: 63 NFYSN-ADRPLSAWQRGVNALLPQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSATSS 121
Query: 173 PFQRHYAYHSVYK---LNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
P +A H +++ L+ M QA EY +G+ DFS+F + Q P +++ + + I
Sbjct: 122 PI---FAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSN--TPFRNIQKAEFI 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G+ + EV G+ FL+ +RN+V LL++G P+ + +L +DR + A+ +A
Sbjct: 177 KQGSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEVKDRTQAAE---TAK 233
Query: 290 PHGLCLVEVKYNE 302
HGL V V+Y E
Sbjct: 234 AHGLYFVGVEYPE 246
>gi|313890306|ref|ZP_07823938.1| tRNA pseudouridine synthase A [Streptococcus pseudoporcinus SPIN
20026]
gi|416852114|ref|ZP_11909259.1| tRNA pseudouridine synthase A [Streptococcus pseudoporcinus LQ
940-04]
gi|313121292|gb|EFR44399.1| tRNA pseudouridine synthase A [Streptococcus pseudoporcinus SPIN
20026]
gi|356739603|gb|EHI64835.1| tRNA pseudouridine synthase A [Streptococcus pseudoporcinus LQ
940-04]
Length = 249
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 143/253 (56%), Gaps = 10/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG++++G+Q QT+ TIQ +EK L+R+ K + + + GA RTD GVHA+G
Sbjct: 3 RYKAIISYDGSQFSGFQRQTNARTIQEEIEKTLMRLNK--GKTITIQGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF D LE + AL+ P DI V + +FHAR+S K Y + +
Sbjct: 61 QVIHFDLAERRD-LEKLRFALDTQTPEDIDVISVEEVSNDFHARYSKHLKTYEFIVDIGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV- 228
+P R YA H Y L+ +L++ A + VG HDF+ F + N V+++++ D
Sbjct: 120 PKNPMMRQYATHYPYPLDFSLIKLAIKDLVGTHDFTGFTAA--GTSVENKVRTLYQADCN 177
Query: 229 -IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
L G+GFLY+QVRNMV LL+IG + +P + V +I+ Q ++LA ++
Sbjct: 178 FDSHRQFLIFTFTGNGFLYKQVRNMVGTLLKIGNQRMPVEQV-RIILEQKNRQLAGPTIA 236
Query: 288 APPHGLCLVEVKY 300
+GL L E+ Y
Sbjct: 237 G--NGLYLKEIIY 247
>gi|110834324|ref|YP_693183.1| tRNA pseudouridine synthase A [Alcanivorax borkumensis SK2]
gi|123149458|sp|Q0VPI7.1|TRUA_ALCBS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|110647435|emb|CAL16911.1| Pseudouridylate synthase [Alcanivorax borkumensis SK2]
Length = 267
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 135/251 (53%), Gaps = 10/251 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSP-PTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
L I YDGT + GWQ Q S T+Q +E AL +K+ + +V A RTD GVH GQV
Sbjct: 6 LGIEYDGTDFRGWQMQQSGVRTVQECLEAAL---SKVANHSVTVVCAGRTDAGVHGTGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF + + ++S N LP D+ +R +FHARFSA S+ Y Y IYN A
Sbjct: 63 VHFDSDAPRE-MKSWIMGGNTNLPRDVTIRWAVPVSDDFHARFSAVSRRYRYVIYNHARP 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
R + L+ MR+AA Y VG HDF+A+ +V + +P+K++ ++ E
Sbjct: 122 PALYRSQVTWNHRPLDVAAMREAASYLVGHHDFTAYRSVHCQAK--SPLKTLHSLELYEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G +L LE + FL VRN+ +L+++G PP +L +DR+ A +APP
Sbjct: 180 GKVLVLEAHANAFLMHMVRNIAGVLMKVGAGKKPPVWAKDVLECRDRR---LGAATAPPF 236
Query: 292 GLCLVEVKYNE 302
GL LVE++Y E
Sbjct: 237 GLYLVEIEYPE 247
>gi|381161120|ref|ZP_09870351.1| pseudouridylate synthase I [Thiorhodovibrio sp. 970]
gi|380877356|gb|EIC19449.1| pseudouridylate synthase I [Thiorhodovibrio sp. 970]
Length = 279
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/272 (35%), Positives = 140/272 (51%), Gaps = 10/272 (3%)
Query: 43 DDSFPGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTD 102
D ++ L I YDG+ ++GWQ Q PT+Q V+ A RV + L A RTD
Sbjct: 3 DTEAQSYRIALGIEYDGSCFSGWQMQHHAPTVQQEVQAAASRVAD---HPVVLHCAGRTD 59
Query: 103 TGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYH 162
GVHA QV HF T S + +N LPP+I +R A +FHARFSA+ + Y
Sbjct: 60 AGVHALAQVVHFDTQASRTERSWV-LGINANLPPEIAIRWARAMPADFHARFSARERHYR 118
Query: 163 YKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKS 222
Y I N A + L+ MR+A VG HDFS+F + + +PV++
Sbjct: 119 YLILNRPTRPALLARRAVWTHRPLDLEPMREAGRALVGTHDFSSFRALGCQAK--SPVRT 176
Query: 223 VFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELA 282
++ ++ G L++L V GFL+ VRN+ +L+ IG+ P + ++LA +DR
Sbjct: 177 LYYLELSRQGDLIELAVGADGFLHHMVRNIAGVLMAIGRGDAPVEWTEQLLAERDRT--- 233
Query: 283 KYALSAPPHGLCLVEVKYNEEHLRLPAACPLS 314
+ ++APP GL L V Y EH +LP+A S
Sbjct: 234 RGGVTAPPQGLYLSAVDY-PEHYQLPSASGAS 264
>gi|167748465|ref|ZP_02420592.1| hypothetical protein ANACAC_03209 [Anaerostipes caccae DSM 14662]
gi|167652457|gb|EDR96586.1| tRNA pseudouridine synthase A [Anaerostipes caccae DSM 14662]
Length = 252
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 135/256 (52%), Gaps = 13/256 (5%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ +L +AYDGT Y GWQ Q TI+ I+ + L L E++ ++GASRTD+GVHA G
Sbjct: 3 RIKLEVAYDGTNYCGWQIQPKDTTIEGILNEKL---GSLLGEEITVIGASRTDSGVHALG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
VA F T G E I ALN LP DI ++ S +FH R+ K Y Y IYN
Sbjct: 60 NVAVFDTETEIPG-ERIARALNQRLPDDIVIQSSSEVKDDFHPRYQDTRKTYEYTIYNAE 118
Query: 170 VMDPFQ-RHYAYHSVY-KLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
+P RH+ H VY L+ MR AA F+G+HDF +F + V++++ +
Sbjct: 119 FDNPVTARHH--HFVYVPLDAERMRTAARCFLGEHDFLSFSTTGSPTK--TTVRTIYECE 174
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V + G + + V G+GFLY VR M L+ IG+ P+ V ++ R K +
Sbjct: 175 VRQNGRYITMRVTGNGFLYNMVRMMAGTLISIGRGRKDPEWVRELFLHPKR---GKAGPN 231
Query: 288 APPHGLCLVEVKYNEE 303
AP GL L+ + Y +E
Sbjct: 232 APAKGLTLINIHYMDE 247
>gi|422344507|ref|ZP_16425432.1| tRNA pseudouridine synthase A [Selenomonas noxia F0398]
gi|355376576|gb|EHG23818.1| tRNA pseudouridine synthase A [Selenomonas noxia F0398]
Length = 267
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 100/255 (39%), Positives = 140/255 (54%), Gaps = 19/255 (7%)
Query: 53 LVIAYDGTRYAGWQFQTSPP--TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
L IAYDGTRY G+Q Q SPP +Q +E AL V E + L A RTD GVHA GQ
Sbjct: 18 LKIAYDGTRYHGFQRQ-SPPVVAVQNALEAALAEVCG---ETVELAAAGRTDAGVHACGQ 73
Query: 111 VAHFITPFSYDG---LESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
V +F T DG E + A+NGLLPPDI V + A +F AR SAK K Y Y++
Sbjct: 74 VVNFFT----DGRIPTERLPRAVNGLLPPDIAVTDAWEAARDFSARHSAKGKAYVYRMEQ 129
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
V +PF R+YA+ L+ MR A VG HD+S+F ++PV+++
Sbjct: 130 CIVPNPFTRNYAWQIFRPLDVEAMRAALAMLVGTHDYSSFRAA--GGAPMSPVRTIDEIR 187
Query: 228 VIEMG-ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
+ + G L + G+GFLY VRN+++ ++ +G+E I +I A +DR+ +
Sbjct: 188 LEDEGEGRLSCYLHGNGFLYHMVRNIMSTVVSVGQERISVGRFAEIFAARDRRLASP--- 244
Query: 287 SAPPHGLCLVEVKYN 301
+AP GL L+ V Y+
Sbjct: 245 TAPACGLYLLHVDYD 259
>gi|312144215|ref|YP_003995661.1| tRNA pseudouridine synthase A [Halanaerobium hydrogeniformans]
gi|311904866|gb|ADQ15307.1| tRNA pseudouridine synthase A [Halanaerobium hydrogeniformans]
Length = 248
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 140/253 (55%), Gaps = 11/253 (4%)
Query: 51 WRLVIAYDGTRYAGWQFQ-TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ + YDG+ Y+GWQ Q + TIQ +E AL +K+ + + ++G+ RTD GVHA G
Sbjct: 5 YKITLEYDGSNYSGWQRQKNTKETIQEKLENAL---SKINKNKVEVIGSGRTDAGVHAAG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
Q A+F + I A+N LP DI + +FHAR+ A+ K Y Y+I N
Sbjct: 62 QTANFFLDIQIPTYK-IPIAINTHLPDDIICYKAEKVAKDFHARYDARGKKYRYRILNSN 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV- 228
F R+Y Y +L+ +M++ A+ F+G HDF+AF + + + ++ ++ FD+
Sbjct: 121 FNSVFVRNYVYKVHQRLDLDIMQKGAKIFLGSHDFAAFCSA--GSSVDSTIREIYSFDIN 178
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ +Q+++ GSGFLY VR +V L+++ K + +ILA R+ + +A
Sbjct: 179 SKTNGEIQIDISGSGFLYNMVRILVGTLIELAKGKRNLADLEEILAGTQRE---RAGFTA 235
Query: 289 PPHGLCLVEVKYN 301
P GL L+EV Y+
Sbjct: 236 PAKGLTLLEVFYD 248
>gi|344341009|ref|ZP_08771932.1| tRNA pseudouridine synthase A [Thiocapsa marina 5811]
gi|343799254|gb|EGV17205.1| tRNA pseudouridine synthase A [Thiocapsa marina 5811]
Length = 302
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 95/272 (34%), Positives = 140/272 (51%), Gaps = 11/272 (4%)
Query: 55 IAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHF 114
I YDG+ + GWQ Q ++Q +E+A+ +V +R+ A RTD GVHA QV HF
Sbjct: 40 IEYDGSAFRGWQIQVGVRSVQATLEEAIGQVAD---HPIRVQCAGRTDAGVHADEQVVHF 96
Query: 115 ITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPF 174
T + N LPPD+ VR P+FHARF A+++ Y Y I A P
Sbjct: 97 DTSARRTERAWV-LGTNVNLPPDVAVRWACPVDPQFHARFDAQARHYRYLIMVRATRSPL 155
Query: 175 QRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGAL 234
QR A S L+ MR+A + VG HDFS+F V + +P++ + ++ E L
Sbjct: 156 QRDRAVWSHRPLDIERMREAGQALVGVHDFSSFRAVACQAK--SPIRHLHYLELSETDDL 213
Query: 235 LQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLC 294
++L V +GFL+ VRN+ +L+ IG+ P D ++L +DR+ ++APP GL
Sbjct: 214 IELRVGANGFLHHMVRNIAGVLMTIGRGEAPLDWTRELLELRDRR---LGGVTAPPQGLY 270
Query: 295 LVEVKYNEEHLRLPAA-CPLSSFGRHHSVRKC 325
V Y E +LP+ P S +H+ R C
Sbjct: 271 FVRADYPEA-FQLPSGPAPAPSTDQHNVPRSC 301
>gi|406837773|ref|ZP_11097367.1| tRNA pseudouridine synthase [Lactobacillus vini DSM 20605]
Length = 249
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 141/255 (55%), Gaps = 13/255 (5%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ +AYDGT +AG+Q Q T+Q ++EKA+ R+ K + + G+ RTD GVHA G
Sbjct: 4 RYKVTLAYDGTNFAGFQVQPHQRTVQGVLEKAVNRMNKANNY-VHIFGSGRTDAGVHALG 62
Query: 110 QVAHF--ITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
QV HF + G+ + LN +LP D++V + FHAR++ K Y Y++
Sbjct: 63 QVVHFDLVNDVPDSGIVN---GLNSMLPLDMQVLQAEHVSANFHARYTTHGKRYLYRVSL 119
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
+DPF+R Y H Y L+ TL+R+A + VG HDFS+FV + V++++
Sbjct: 120 CWYVDPFKRFYTGHWKYPLDVTLIREALKDVVGTHDFSSFVAAGSQAK--THVRTIYSAT 177
Query: 228 VIEMGALLQL--EVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
V A +L E G+GFLY QVR MVA LL+IG + P ++ +DR +
Sbjct: 178 VQMQTAEHELIFEFYGNGFLYNQVRIMVAALLEIGSKRRPVHDFLRLYQVKDRTQCRG-- 235
Query: 286 LSAPPHGLCLVEVKY 300
+AP GL L EV Y
Sbjct: 236 -TAPASGLYLKEVVY 249
>gi|387886596|ref|YP_006316895.1| tRNA pseudouridine synthase A [Francisella noatunensis subsp.
orientalis str. Toba 04]
gi|386871412|gb|AFJ43419.1| tRNA pseudouridine synthase A [Francisella noatunensis subsp.
orientalis str. Toba 04]
Length = 258
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 137/248 (55%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L I Y G Y GWQ Q+ P++Q +EKAL +K+ +++ + A RTDTGVHA QV
Sbjct: 6 LQIEYFGKNYCGWQRQSHSPSVQEELEKAL---SKIANQNIEVTCAGRTDTGVHATSQVV 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F + + L S N LLP DI++ +I +F++RF+A ++ Y+Y IYN+
Sbjct: 63 NFHSD-ADRTLSSWMRGTNALLPKDIKILDIREVDNDFNSRFTAINRTYNYIIYNNITSS 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P + +LN M QA +Y +G+ DF++F + Q P +++ + + I++G
Sbjct: 122 PIFVEHCLWENRELNIDKMNQACKYLLGEQDFTSFRSSQCQSN--TPFRNIQKAEFIKLG 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ EV G+ FL+ +RN + LL++G E P+ + +L +DR A+ +A HG
Sbjct: 180 NFIVFEVIGNAFLHHMIRNFIGSLLKVGLEFESPEWIKLVLEAKDRTRAAE---TAKAHG 236
Query: 293 LCLVEVKY 300
L V V+Y
Sbjct: 237 LYFVGVEY 244
>gi|387818125|ref|YP_005678470.1| tRNA pseudouridine synthase A [Clostridium botulinum H04402 065]
gi|322806167|emb|CBZ03735.1| tRNA pseudouridine synthase A [Clostridium botulinum H04402 065]
Length = 246
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 133/250 (53%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQT-SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDG++Y GWQ Q + TIQ +E L +T ED+ L+ + RTDTGVHA Q
Sbjct: 5 KLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTG---EDINLIASGRTDTGVHANMQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T F + I + LP DI V + FH+R + K K Y YKI N
Sbjct: 62 VANFHTTFQ-GSTDEILSYCYEYLPKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNKKF 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
D F R ++YH L+ M++A Y VG+HDF++F + + + V++++ D+I+
Sbjct: 121 HDVFSRKHSYHVPETLDIEAMKEACTYLVGRHDFASFTAARSKKK--STVRTLYSIDIIK 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
+ L GSGFL++ +R + L+++G + V IL +DR+ K +AP
Sbjct: 179 KDGYVDLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILEAEDRR---KAGPTAPS 235
Query: 291 HGLCLVEVKY 300
GL + V Y
Sbjct: 236 QGLFMTSVDY 245
>gi|315037561|ref|YP_004031129.1| tRNA pseudouridine synthase A [Lactobacillus amylovorus GRL 1112]
gi|325956034|ref|YP_004286644.1| tRNA pseudouridine synthase A [Lactobacillus acidophilus 30SC]
gi|312275694|gb|ADQ58334.1| tRNA pseudouridine synthase A [Lactobacillus amylovorus GRL 1112]
gi|325332599|gb|ADZ06507.1| tRNA pseudouridine synthase A [Lactobacillus acidophilus 30SC]
Length = 264
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 143/255 (56%), Gaps = 9/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ ++YDG + G+Q Q T+Q +E AL ++TK +R + + G+ RTD GVHA G
Sbjct: 4 RYKMTMSYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGKR--VIVQGSGRTDAGVHAVG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF P + ALN ++P DI + FHAR+S K K Y Y++ D
Sbjct: 62 QVIHFDYPGKTIPANRMILALNSMMPTDIVFTDCQIVDENFHARYSIKGKWYRYRVSLDH 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
++PF+R Y H Y L+ M++AA+ +G HDF++F ++ + V++++ ++
Sbjct: 122 FVNPFKRFYTGHFQYHLDIKKMQEAAKDLLGTHDFTSF--AASGGQIEDKVRTIYYVNIR 179
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E + + GSGFLY VR MVA LL+IG + P + +++ +DR+E+ + +
Sbjct: 180 KNEEENEIIFDFIGSGFLYNMVRIMVAALLEIGNDRRPVHDLKRVILAKDRQEVRQ---T 236
Query: 288 APPHGLCLVEVKYNE 302
A GL L V Y+E
Sbjct: 237 AQASGLYLYHVFYDE 251
>gi|447911784|ref|YP_007393196.1| tRNA pseudouridine synthase A [Enterococcus faecium NRRL B-2354]
gi|445187493|gb|AGE29135.1| tRNA pseudouridine synthase A [Enterococcus faecium NRRL B-2354]
Length = 246
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 138/250 (55%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
+L I YDG RY+GWQ TIQ +EK L ++T E++ ++G+ RTD G HA GQ
Sbjct: 5 KLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTN---EEIEIIGSGRTDAGTHARGQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T GL + +N LP DI ++ I FH+R++A K Y Y ++N+ +
Sbjct: 62 VANFKTNTEI-GLAEMIDFMNRYLPRDIVIKRIEEMPERFHSRYNAVGKKYSYYVWNNVI 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
F+R+++++ +L+ + A E VG HDF F ++++ + + V+++ +
Sbjct: 121 PSAFERNHSFYFPQELDMDKLNAACEKLVGTHDFIGFSALKKSKK--STVRTIDELSIER 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G +L G GFLY+ VR ++ LL+IG A+P + + +I ++ R+ + + P
Sbjct: 179 KGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPIETIDEIFESKVRQHAGE---TVPA 235
Query: 291 HGLCLVEVKY 300
GL L EV Y
Sbjct: 236 QGLFLDEVYY 245
>gi|399156206|ref|ZP_10756273.1| tRNA pseudouridine synthase A [SAR324 cluster bacterium SCGC
AAA001-C10]
Length = 266
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 139/260 (53%), Gaps = 8/260 (3%)
Query: 51 WRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
W L++ Y+GT Y GWQ Q + PTI+ +E+A+ R+T E +++ GA RTD+GVHA
Sbjct: 7 WLLLLTYEGTCYHGWQVQPNSPTIEETLEQAVKRLTG---ETVKVHGAGRTDSGVHALNF 63
Query: 111 VAHFIT-PFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
A+F ++ E ALN +LPPDI V+ +FHAR SA K Y Y I N
Sbjct: 64 TANFTAIAENFKTAEKWRVALNAVLPPDIVVKYAQTVAADFHARHSAVGKRYRYLISNLP 123
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQ-RNDRLLNPVKSVFRFDV 228
PF + ++ L+ LMR+AA+ VGKHDFSAF + + ++ + F+V
Sbjct: 124 YKPPFSLNQSWWVSQDLDIDLMRKAADLLVGKHDFSAFRAASCSSPSSVKDLRVIEIFEV 183
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ LQ+E+E + FL VR + L+++G+ + V + L RK+ K +A
Sbjct: 184 RSRHSTLQIEMEANSFLQHMVRIIAGTLVEVGRGYKKVEDVAQALGNGQRKQAGK---TA 240
Query: 289 PPHGLCLVEVKYNEEHLRLP 308
P HGL + V Y E + P
Sbjct: 241 PGHGLYSLSVIYPEGMIEWP 260
>gi|223933386|ref|ZP_03625373.1| tRNA pseudouridine synthase A [Streptococcus suis 89/1591]
gi|330832153|ref|YP_004400978.1| tRNA pseudouridine synthase A [Streptococcus suis ST3]
gi|386583440|ref|YP_006079843.1| tRNA pseudouridine synthase A [Streptococcus suis D9]
gi|223897953|gb|EEF64327.1| tRNA pseudouridine synthase A [Streptococcus suis 89/1591]
gi|329306376|gb|AEB80792.1| tRNA pseudouridine synthase A [Streptococcus suis ST3]
gi|353735586|gb|AER16595.1| tRNA pseudouridine synthase A [Streptococcus suis D9]
Length = 249
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 139/255 (54%), Gaps = 10/255 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ +I+YDG ++G+Q QT T+Q +EK L+R+ + + + GA RTD GVHA+G
Sbjct: 3 RYKAIISYDGHDFSGFQRQTHARTVQEEIEKTLVRLNS--GQPVTVHGAGRTDAGVHAYG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF S D +E + AL+ P DI V ++ +FH R++ SK Y + +
Sbjct: 61 QVIHFDLAGSRD-VEKLRFALDTQTPEDIDVVQVEQVADDFHCRYAKHSKTYEFLVDIGR 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRNDRLLNPVKSVFRFD 227
+P RHYA Y L+ +L+ +A + VG HDF+ F D++ + +D
Sbjct: 120 PKNPMMRHYATFYPYDLDLSLIEEAIQDLVGTHDFTGFTASGTSVEDKVRTIKAASMEYD 179
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ L G+GFLY+QVRNMV LL+IG +P + +ILA +DR LA +
Sbjct: 180 --QRRQFLIFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVGQIKRILAEKDRG-LA--GPT 234
Query: 288 APPHGLCLVEVKYNE 302
A +GL L E+ Y +
Sbjct: 235 AAGNGLYLKEIIYED 249
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,450,308,643
Number of Sequences: 23463169
Number of extensions: 231559371
Number of successful extensions: 472775
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3724
Number of HSP's successfully gapped in prelim test: 1765
Number of HSP's that attempted gapping in prelim test: 452591
Number of HSP's gapped (non-prelim): 6059
length of query: 330
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 188
effective length of database: 9,027,425,369
effective search space: 1697155969372
effective search space used: 1697155969372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 77 (34.3 bits)