BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043662
(330 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6MEE7|TRUA1_PARUW tRNA pseudouridine synthase A 1 OS=Protochlamydia amoebophila
(strain UWE25) GN=truA1 PE=3 SV=1
Length = 256
Score = 210 bits (534), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 107/255 (41%), Positives = 163/255 (63%), Gaps = 7/255 (2%)
Query: 51 WRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
++L IAYDGT Y+GWQ Q + +IQ +++AL + L++E + LVG+ RTD GVHA GQ
Sbjct: 4 YKLTIAYDGTNYSGWQIQPNASSIQQKIQEALCIL--LKKEKVVLVGSGRTDAGVHAKGQ 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VAHF Y L +H +LNGLLP DIR++ + P FH+++SA K YHY ++ + V
Sbjct: 62 VAHFHFQ-DYIDLSRLHVSLNGLLPRDIRIKAVEPVSPRFHSQYSAIRKEYHYYLHLNKV 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVN-VQRNDRLLNPVKSVFRFDVI 229
MDPFQR Y++H K++ ++++AA F G HDF++F N R NPV++++R D+
Sbjct: 121 MDPFQRLYSWHFQRKIDVNILKKAAILFTGTHDFTSFANEAHRGTAAKNPVRTLYRLDIK 180
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
L+LE EG GFLY+ VRN+V L+ + + + +I A ++R++ +L+AP
Sbjct: 181 PNEGGLRLEFEGDGFLYKMVRNIVGTLMDVASHKRAIEEINQIFAAKNRRQA---SLAAP 237
Query: 290 PHGLCLVEVKYNEEH 304
P GL L++V Y E+
Sbjct: 238 PEGLFLIQVFYENEN 252
>sp|B1I1B5|TRUA_DESAP tRNA pseudouridine synthase A OS=Desulforudis audaxviator (strain
MP104C) GN=truA PE=3 SV=1
Length = 250
Score = 188 bits (477), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 108/252 (42%), Positives = 148/252 (58%), Gaps = 10/252 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSP--PTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
RL +AYDGT Y G+Q Q+ PTIQ +E+ L +L L++ GASRTD GVHA G
Sbjct: 5 RLTLAYDGTAYHGFQKQSGSGLPTIQETLERCL---AELSGAALKVTGASRTDAGVHARG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV +F+T E I AALNG+LP DI + +FHAR+SA +K Y Y +YN
Sbjct: 62 QVVNFVTGRWGIPTERIPAALNGVLPGDIAALDAREVPADFHARYSAVAKTYSYTLYNHP 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
V PFQR Y+ H L+ MR AA + +G+HDFS F R + + V+++ R D+
Sbjct: 122 VRSPFQRLYSLHVPRALDLRAMRLAARHLMGRHDFSTFQAAGRP--VQSAVRTLTRADIE 179
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
L++L GFLY VR M LL++G E + P+ +P I+A+ DR A+ + P
Sbjct: 180 AQAPLVRLVFRADGFLYNMVRIMAGTLLEVGLERLDPEALPDIIASGDR---ARAGPTVP 236
Query: 290 PHGLCLVEVKYN 301
PHGLCL EV+Y+
Sbjct: 237 PHGLCLEEVEYD 248
>sp|Q8R7Y7|TRUA_THETN tRNA pseudouridine synthase A OS=Thermoanaerobacter tengcongensis
(strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
GN=truA PE=3 SV=1
Length = 240
Score = 186 bits (473), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/248 (42%), Positives = 149/248 (60%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L+I YDGT Y GWQ+Q + T+Q ++EKA+ +VT E + L+G+SRTDTGVHA QVA
Sbjct: 2 LIIEYDGTNYHGWQYQKNAITVQEVLEKAIEKVTG---EKVNLIGSSRTDTGVHALYQVA 58
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T E + ALN +LP D+ V + FHAR+SA+SK Y Y I N
Sbjct: 59 NFKTKTKIPP-EKLPYALNAVLPDDVVVVKAKEVDKSFHARYSARSKRYRYLILNRQFPM 117
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P R+Y +H Y L+ M++AA +F G HDFSAF ++ +NPVK++F V + G
Sbjct: 118 PTMRNYCWHVPYPLDVEAMKKAAFFFRGTHDFSAF--KASGNKKVNPVKTIFDLTVEKEG 175
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
L+++EVE GFLY VR +V L+ +G I +P I+ ++DR K ++APP G
Sbjct: 176 DLIKIEVEADGFLYNMVRIIVGTLVYVGLGKIKAGEIPAIIESKDR---TKAGITAPPQG 232
Query: 293 LCLVEVKY 300
L LV + Y
Sbjct: 233 LYLVRIVY 240
>sp|A8F526|TRUA_THELT tRNA pseudouridine synthase A OS=Thermotoga lettingae (strain ATCC
BAA-301 / DSM 14385 / TMO) GN=truA PE=3 SV=1
Length = 245
Score = 184 bits (466), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/248 (40%), Positives = 151/248 (60%), Gaps = 10/248 (4%)
Query: 54 VIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAH 113
+++YDGT + G+Q Q T+Q + E+AL R+ K + + + A RTDTGVHA GQ+
Sbjct: 7 IVSYDGTNFCGFQVQKDVRTVQGMFEQALERILK---QRVITIAAGRTDTGVHANGQIVC 63
Query: 114 FITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDP 173
F D ES+ A+N LP DI VR++ FH RF AK +IYHY IYN +
Sbjct: 64 FDCYLDIDE-ESMKNAMNANLPDDIYVRKVVEVDKNFHPRFDAKRRIYHYLIYNSQEPNL 122
Query: 174 FQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM-G 232
F R+YA+ YKLN MR+AA++F G+HDF +F ++ D N V++++R V+++ G
Sbjct: 123 FIRNYAWWFPYKLNICKMREAAKFFEGEHDFRSF--MKSGDHRENTVRTIYRVRVLQLRG 180
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
++ + VEG FL R VRNMV L+++G P+ + ++L +DR +K A++APPHG
Sbjct: 181 GIILIRVEGRSFLRRMVRNMVGALVKVGVGEWKPEDISRVLELKDR---SKAAVTAPPHG 237
Query: 293 LCLVEVKY 300
L L V +
Sbjct: 238 LYLYAVDF 245
>sp|Q8XLQ0|TRUA1_CLOPE tRNA pseudouridine synthase A 1 OS=Clostridium perfringens (strain
13 / Type A) GN=truA1 PE=3 SV=1
Length = 248
Score = 183 bits (465), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/253 (39%), Positives = 148/253 (58%), Gaps = 13/253 (5%)
Query: 52 RLVIAYDGTRYAGWQFQ----TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHA 107
++ + YDG++Y GWQ Q ++ T+Q +EK L TK+ E+++L+G RTD+GVHA
Sbjct: 5 KITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVL---TKMTSEEIQLIGCGRTDSGVHA 61
Query: 108 WGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
VA+F T S LE I +N LP DIRV EI A FHARF+ KSK Y Y I N
Sbjct: 62 KNYVANFKTN-SLMTLEQIIEYINEYLPEDIRVTEIREASERFHARFNVKSKTYEYTIDN 120
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
+ D F R YA+H KL+ M + A+Y +G HDF +F +++ ++ + ++++ +
Sbjct: 121 NKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNK--STLRTINSIE 178
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E +L +++ G+GFL VR MV L+ +G I P + IL ++R AK +
Sbjct: 179 FHENNNILSIKINGNGFLLNMVRIMVGTLVDVGLGKIEPKYINDILEAKER---AKASEK 235
Query: 288 APPHGLCLVEVKY 300
AP HGLCL+E+ Y
Sbjct: 236 APAHGLCLLELNY 248
>sp|A3DJK8|TRUA_CLOTH tRNA pseudouridine synthase A OS=Clostridium thermocellum (strain
ATCC 27405 / DSM 1237) GN=truA PE=3 SV=1
Length = 244
Score = 181 bits (458), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 144/249 (57%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+I YDGT Y GWQ Q + T+Q +E+A + L E + L+GASRTD GVHA GQV
Sbjct: 5 KLIIEYDGTNYHGWQKQKNAKTVQDTIERA---IKGLTGEKVDLIGASRTDFGVHALGQV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+FIT G + ALN +LP DI ++E +FHAR+ AK K Y Y IYN
Sbjct: 62 ANFITNSGIPG-DRFSYALNRMLPDDIVIKESQEVDMDFHARYKAKGKRYRYLIYNSQFP 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
RH YH +KL+ M++AA YF+G HDFSAF + + + V+++ +
Sbjct: 121 SALLRHRTYHVSHKLDFESMQRAASYFLGTHDFSAFRSSGSSAK--TSVRTITDVSLERE 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
+++ E+ G GFLY VR +V L+++G I D +P+I+ ++ RK + +AP
Sbjct: 179 DKIVKFEIAGDGFLYNMVRIIVGTLMEVGIGKIRADEIPQIIESRKRKRAGR---TAPAE 235
Query: 292 GLCLVEVKY 300
GL LVEV Y
Sbjct: 236 GLYLVEVYY 244
>sp|P70973|TRUA_BACSU tRNA pseudouridine synthase A OS=Bacillus subtilis (strain 168)
GN=truA PE=3 SV=2
Length = 247
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 145/253 (57%), Gaps = 7/253 (2%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+ + I+YDG + G+Q Q T+Q +EKAL + K ++ + +V + RTD+GVHA
Sbjct: 1 MRLKCTISYDGHLFNGYQVQPGKRTVQDELEKALAVLHK-SKDRIPVVSSGRTDSGVHAA 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF TP S E ALN LLP DI V++ A FHARFSA K Y Y +Y +
Sbjct: 60 GQVIHFDTPLSIPA-ERWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTE 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
D F+RHYAYH Y+LN MR+AA++ +G HDF++F + + + V++++ D
Sbjct: 119 KHPDVFKRHYAYHFSYRLNVQDMREAAKHLIGTHDFTSFCAAKTE--VQDKVRTIYELDW 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
E LQ+ + GSGFLY VR + LL G I PD V +L +DR+ + +A
Sbjct: 177 TETADGLQMRITGSGFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAGR---TA 233
Query: 289 PPHGLCLVEVKYN 301
P HGL L V Y+
Sbjct: 234 PGHGLYLWNVYYD 246
>sp|Q9PJT0|TRUA_CHLMU tRNA pseudouridine synthase A OS=Chlamydia muridarum (strain MoPn /
Nigg) GN=truA PE=3 SV=1
Length = 267
Score = 178 bits (452), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 150/252 (59%), Gaps = 14/252 (5%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L IAY GT Y+GWQ+Q + +IQ ++E L K+ R + ++ + RTD GVHA GQVA
Sbjct: 7 LRIAYQGTAYSGWQYQPNALSIQEVLETLL---QKISRTRISVIASGRTDAGVHAQGQVA 63
Query: 113 HFITP----FSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
HF P FS G I LN LLP DI +R++ A +FH+RFSA +K YHY +
Sbjct: 64 HFCCPDHPHFSDPG--QIKKMLNALLPHDIVIRDVIATNEDFHSRFSAITKEYHYTLSLL 121
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
P R + + +KL MR+AA+Y VG HDF++F N+ R + V++++ D+
Sbjct: 122 PKPLPHHRLFCFSPRHKLCLESMREAAKYLVGTHDFASFANLGRE--YSSTVRTLYALDL 179
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+E L+ + +G+GFLY+ VRN+V LL IGK PP+ + ++L +DRK K SA
Sbjct: 180 LEQEHLVTVICKGNGFLYKMVRNIVGALLDIGKGKYPPEHLLEMLEKKDRK---KGPPSA 236
Query: 289 PPHGLCLVEVKY 300
PP+GL L V Y
Sbjct: 237 PPYGLSLHHVCY 248
>sp|C4KZL4|TRUA_EXISA tRNA pseudouridine synthase A OS=Exiguobacterium sp. (strain ATCC
BAA-1283 / AT1b) GN=truA PE=3 SV=1
Length = 246
Score = 178 bits (452), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 101/255 (39%), Positives = 144/255 (56%), Gaps = 15/255 (5%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ +L++AYDGT YAG+Q Q + TIQ +E L R + R ++++ + RTD VHA G
Sbjct: 3 RIKLIVAYDGTHYAGYQVQPNGNTIQAEIESVLAR---MHRHPVKIIASGRTDARVHALG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF T E ALN +LP DI V++ FHAR+ AK K Y Y I
Sbjct: 60 QVIHFDTTLEMPA-ERFVKALNAMLPDDILVKQAEEMDDTFHARYGAKRKEYRYHIRQTE 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAF--VNVQRNDRLLNPVKSVFRFD 227
DPF+RHYA YKL+ MRQA E +G HDF++F + DR V++++ +
Sbjct: 119 --DPFRRHYAATVTYKLSLEAMRQAMERLIGTHDFTSFSVTKAEVEDR----VRTIYEAE 172
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
V+EMG + GSGFLY QVR MV ++++G+ P + ++L +DR+ ++
Sbjct: 173 VLEMGDEIIFRFVGSGFLYNQVRIMVGTVIEVGRGKYQPADITQMLEAKDRRVA---GIT 229
Query: 288 APPHGLCLVEVKYNE 302
APPHGL L V Y +
Sbjct: 230 APPHGLYLWNVNYEK 244
>sp|B8I814|TRUA_CLOCE tRNA pseudouridine synthase A OS=Clostridium cellulolyticum (strain
ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=truA PE=3
SV=1
Length = 245
Score = 177 bits (449), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 145/252 (57%), Gaps = 10/252 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
K RL I YDGT Y GWQ Q + T+Q +++KAL +KL ED+ + G SRTD GVHA+G
Sbjct: 3 KIRLTIEYDGTNYHGWQIQKNAKTVQEVIQKAL---SKLLGEDVGVTGCSRTDVGVHAYG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVAHF+T G + A+N LLP DI ++ EFHAR+SAK K Y Y IYN
Sbjct: 60 QVAHFLTDSKIPG-DKFSYAINNLLPDDIVIKNSEEVPEEFHARYSAKGKKYRYLIYNSP 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV- 228
R+ + H +LN M++AA YF G+HDF AF ++ + V+ ++ +V
Sbjct: 119 HASAIMRNRSCHVRPELNVAEMQKAAGYFKGEHDFLAFQAT--GGQVRSTVREIYGMEVY 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
++ ++ +EV G+GFLY VR + L+ +G + +P I+A DR + K +A
Sbjct: 177 VKEDNMISIEVSGNGFLYNMVRIIAGTLIYVGMGKLHESEIPGIIAGLDRTKAGK---TA 233
Query: 289 PPHGLCLVEVKY 300
P GL LV++ Y
Sbjct: 234 PAQGLYLVQIYY 245
>sp|Q253C0|TRUA_CHLFF tRNA pseudouridine synthase A OS=Chlamydophila felis (strain
Fe/C-56) GN=truA PE=3 SV=1
Length = 268
Score = 177 bits (448), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 152/250 (60%), Gaps = 10/250 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L++AY GT YAGWQ Q + +IQ ++E AL RV + + + + RTD+GVHA+GQVA
Sbjct: 6 LLLAYQGTAYAGWQRQPNDLSIQEVIESALARVLG---KPIVVSSSGRTDSGVHAYGQVA 62
Query: 113 HFITPFS--YDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
HF P + +SI LN +LP DI +R++ + FHARFSA +K Y Y +
Sbjct: 63 HFSQPDHPLFSQPQSIKKMLNAILPKDIVIRDVVLSDVNFHARFSAIAKEYRYSLTRSPK 122
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
P+QR++AY+ + + LM++ A+Y +G HDF++F N R+ + +++F+ D+I+
Sbjct: 123 PLPWQRYFAYYPRHSIKIDLMQKGAKYLLGTHDFASFANHGRD--YTSTERTLFKLDIID 180
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
++ + +G+GFLY+ VRN+V LL I KE PP+ + +ILA + R+ K +AP
Sbjct: 181 NEEIVTIICKGNGFLYKMVRNIVGSLLDISKEKYPPEYIQEILAQKSRR---KGPPAAPS 237
Query: 291 HGLCLVEVKY 300
H L L V Y
Sbjct: 238 HALSLHHVCY 247
>sp|B0K5S6|TRUA_THEPX tRNA pseudouridine synthase A OS=Thermoanaerobacter sp. (strain
X514) GN=truA PE=3 SV=1
Length = 244
Score = 177 bits (448), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 143/248 (57%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
+V+ YDGT Y GWQ+Q + T+Q +++KA+ +VT E++ L+GASRTDTGVHA QVA
Sbjct: 6 IVVEYDGTNYHGWQYQKNAVTVQEVLQKAIKKVTG---EEVNLIGASRTDTGVHALYQVA 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T E + ALN +LP DI V + FHAR+SAK K Y Y I N
Sbjct: 63 NFKTNTKIPA-EKLPYALNSVLPDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRKFQM 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P R+Y +H Y LN M++AA Y +G HDFSAF + +++V+ + +
Sbjct: 122 PTMRNYCWHISYPLNIEEMKKAASYLIGTHDFSAF--KASGSSKTSTIRTVYDLTIEKNE 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ +E+E +GFLY VR +V L +G I D V IL ++DR K ++APP G
Sbjct: 180 DFINIEIEANGFLYNMVRIIVGTLSYVGLGKIKEDEVYDILKSKDR---TKAGITAPPQG 236
Query: 293 LCLVEVKY 300
L L+++ Y
Sbjct: 237 LYLIKIIY 244
>sp|B0KCN3|TRUA_THEP3 tRNA pseudouridine synthase A OS=Thermoanaerobacter
pseudethanolicus (strain ATCC 33223 / 39E) GN=truA PE=3
SV=1
Length = 244
Score = 177 bits (448), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 143/248 (57%), Gaps = 9/248 (3%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
+V+ YDGT Y GWQ+Q + T+Q +++KA+ +VT E++ L+GASRTDTGVHA QVA
Sbjct: 6 IVVEYDGTNYHGWQYQKNAVTVQEVLQKAIKKVTG---EEVNLIGASRTDTGVHALYQVA 62
Query: 113 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 172
+F T E + ALN +LP DI V + FHAR+SAK K Y Y I N
Sbjct: 63 NFKTNTKIPA-EKLPYALNSVLPDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRKFQM 121
Query: 173 PFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMG 232
P R+Y +H Y LN M++AA Y +G HDFSAF + +++V+ + +
Sbjct: 122 PTMRNYCWHISYPLNIEEMKKAASYLIGTHDFSAF--KASGSSKTSTIRTVYDLTIEKNE 179
Query: 233 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHG 292
+ +E+E +GFLY VR +V L +G I D V IL ++DR K ++APP G
Sbjct: 180 DFINIEIEANGFLYNMVRIIVGTLSYVGLGKIKEDEVYDILKSKDR---TKAGITAPPQG 236
Query: 293 LCLVEVKY 300
L L+++ Y
Sbjct: 237 LYLIKIIY 244
>sp|A4J151|TRUA_DESRM tRNA pseudouridine synthase A OS=Desulfotomaculum reducens (strain
MI-1) GN=truA PE=3 SV=1
Length = 247
Score = 176 bits (447), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/251 (40%), Positives = 151/251 (60%), Gaps = 10/251 (3%)
Query: 52 RLVIAYDGTRYAGWQFQ--TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+L +AYDGT Y G+Q Q T TIQ +EKAL + + + ++++GA RTD GVHA G
Sbjct: 5 KLTLAYDGTNYHGFQEQRGTGLATIQEALEKAL---STIAQTPIQVIGAGRTDAGVHAQG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV +F + E ALN LLP DI+V + +FHARFSA +K Y Y IY+
Sbjct: 62 QVVNFRSEKWPVPAEKAPLALNVLLPGDIKVVKAEEVPMDFHARFSAVAKTYRYSIYHHR 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
VM PF R+Y YH +L+ M++ A Y +G +DF +F + + + +++++R D+I
Sbjct: 122 VMSPFHRYYCYHEPRRLDVNAMQEGAAYLLGTYDFKSF--QAQGTPVKDTIRTIYRADII 179
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E ++ L + G+GFLY VR + LL IG I P+ + KI+ +++R LA +AP
Sbjct: 180 EDAPVINLYLRGNGFLYNMVRIITGTLLNIGFGKIKPEDMVKIIESKNRT-LA--GTTAP 236
Query: 290 PHGLCLVEVKY 300
P GLCL+EV+Y
Sbjct: 237 PQGLCLMEVEY 247
>sp|B2GDT8|TRUA_LACF3 tRNA pseudouridine synthase A OS=Lactobacillus fermentum (strain
NBRC 3956 / LMG 18251) GN=truA PE=3 SV=1
Length = 258
Score = 176 bits (447), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/260 (39%), Positives = 154/260 (59%), Gaps = 20/260 (7%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++ AYDG+ +AG+Q Q T+Q ++E+A+ ++ K + L + G+ RTD GVHA G
Sbjct: 3 RYKITFAYDGSNFAGFQIQPGERTVQQVLERAVNKIAKKPQPPLMVFGSGRTDAGVHALG 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVAHF P+ G S+ ALN LP D+ V+E + P+FHARF A K Y Y++
Sbjct: 63 QVAHFDLPYQIPG-PSLVRALNSSLPLDVLVKEATEVAPDFHARFDAHHKRYRYRVVGGE 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--------NVQRNDRLLNPVK 221
+PF+R+Y H Y ++ M+ AA+ FVG+HDF++FV NV+R D +
Sbjct: 122 FTNPFKRNYTGHYKYPVDVERMQTAAQDFVGEHDFTSFVASGSQATSNVRRIDEV----- 176
Query: 222 SVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKEL 281
+V R E + + G+GFLY QVR MVA LL+IG P D V +++ ++R +L
Sbjct: 177 TVVR---DEENDEVVFDFVGNGFLYNQVRIMVAFLLEIGNGRRPVDDVMRVMKAKNR-DL 232
Query: 282 AKYALSAPPHGLCLVEVKYN 301
A+ +AP GL LVEV Y+
Sbjct: 233 AR--GTAPASGLYLVEVTYD 250
>sp|Q814C2|TRUA1_BACCR tRNA pseudouridine synthase A 1 OS=Bacillus cereus (strain ATCC
14579 / DSM 31) GN=truA1 PE=3 SV=2
Length = 247
Score = 176 bits (447), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/250 (38%), Positives = 147/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q + T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
+ G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 DDEIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L EV YN
Sbjct: 237 GLYLWEVNYN 246
>sp|Q3A3B5|TRUA_PELCD tRNA pseudouridine synthase A OS=Pelobacter carbinolicus (strain
DSM 2380 / Gra Bd 1) GN=truA PE=3 SV=1
Length = 252
Score = 175 bits (443), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 140/249 (56%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
RL+I YDGT Y GWQ Q + ++Q +VE+AL +V LV + RTD GVHA G V
Sbjct: 5 RLIIEYDGTPYVGWQRQPNGLSVQQVVEEALAKVCGGPHS---LVSSGRTDAGVHARGMV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
AHF+TP + + +N LP I VR+ + +FHAR+SA K Y Y IY V
Sbjct: 62 AHFVTPQPLP-MAAYREGVNRFLPAQIAVRDAALMPDDFHARYSAVGKWYRYSIYRSPVR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P +++H L+ MRQAA VG+HDF+AF R V+ VF D+++
Sbjct: 121 SPLACRFSWHVRTVLDLQAMRQAARLLVGRHDFAAFRASGCAAR--TTVREVFSVDIVDA 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
+ ++V GSGFL VR MV L+++G+ A PP+ V +LA RK+ ++AP
Sbjct: 179 EEWVYVDVRGSGFLRNMVRIMVGTLVEVGRGARPPEEVGAMLAGGCRKQ---SGITAPAQ 235
Query: 292 GLCLVEVKY 300
GLCL+EV Y
Sbjct: 236 GLCLMEVAY 244
>sp|A8F9B7|TRUA_BACP2 tRNA pseudouridine synthase A OS=Bacillus pumilus (strain SAFR-032)
GN=truA PE=3 SV=1
Length = 247
Score = 174 bits (442), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 99/253 (39%), Positives = 144/253 (56%), Gaps = 7/253 (2%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
K + ++YDGT + G+Q Q T+Q +E AL ++ K + E + +V + RTD+GVHA
Sbjct: 1 MKVKCTVSYDGTHFKGYQVQPGQRTVQTEIESALAKMHK-QDELVPIVASGRTDSGVHAK 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQV HF TP S +E ALN LLP DIRV + FHARFS SK Y YK+ +
Sbjct: 60 GQVIHFDTPLSIP-MERWPFALNSLLPDDIRVLKAEEVDESFHARFSVVSKEYRYKVSTE 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
+ F R YA H Y+L+ MR+AA Y +G HDF++F N + + V+ ++ +
Sbjct: 119 THQNVFTRQYACHFPYRLDADKMREAAGYLIGTHDFTSFCAA--NTEVQDKVREIYTLEW 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ L++ V G+GFLY VR + LL++G PD + +LA ++R+ K +A
Sbjct: 177 KNVSDGLEMRVRGNGFLYNMVRIIAGTLLEVGSGKFHPDEIKAMLAARNREAAGK---TA 233
Query: 289 PPHGLCLVEVKYN 301
P HGL L EV Y+
Sbjct: 234 PSHGLYLWEVFYD 246
>sp|Q893H3|TRUA1_CLOTE tRNA pseudouridine synthase A 1 OS=Clostridium tetani (strain
Massachusetts / E88) GN=truA1 PE=3 SV=1
Length = 245
Score = 174 bits (441), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 92/250 (36%), Positives = 144/250 (57%), Gaps = 10/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
++++ YDGTRY GWQ Q TIQ +E L +K+ ED++++G RTD GVHA
Sbjct: 5 KMILEYDGTRYKGWQKQKKDVLTIQDKIETVL---SKMTGEDIQVIGCGRTDAGVHAENY 61
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA+F T + ++ + L LP DI V+ + FHAR++ KSK Y Y+I N+
Sbjct: 62 VANFHTNCDF-TVDYMLDYLYEFLPEDIVVKTMKDTSERFHARYNVKSKTYVYRINNNKF 120
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
F + YAYH KLN + M+ AAE+ +G HDF +F ++ N + + ++++ ++ E
Sbjct: 121 RSVFNKKYAYHDNEKLNISAMKDAAEFLIGTHDFKSFTRLKSNSK--STIRAIKYINITE 178
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
++ +EV G+GFL VR + LL++GKE I P + K+L + R A +L P
Sbjct: 179 NQGIISIEVNGNGFLLNMVRIVAGALLEVGKENIKPIDIEKMLNEKKR---ADASLILPA 235
Query: 291 HGLCLVEVKY 300
GLCL +++Y
Sbjct: 236 KGLCLKDIQY 245
>sp|Q9Z7X4|TRUA_CHLPN tRNA pseudouridine synthase A OS=Chlamydia pneumoniae GN=truA PE=3
SV=2
Length = 267
Score = 174 bits (440), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 98/257 (38%), Positives = 150/257 (58%), Gaps = 14/257 (5%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
K L+IAY GT Y+GWQ Q + +IQ ++E +L ++TK L+ + RTD GVHA+G
Sbjct: 3 KVALLIAYQGTAYSGWQQQPNDLSIQEVIESSLKKITKTRTP---LIASGRTDAGVHAYG 59
Query: 110 QVAHFITP----FSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKI 165
QVAHF P F+ L ALN +LP DI +R+++ FHAR+ +K Y Y +
Sbjct: 60 QVAHFRAPDHPLFANANLTK--KALNAILPKDIVIRDVALFDDNFHARYLTIAKEYRYSL 117
Query: 166 YNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFR 225
A P+QRH+ Y + +T LM++ A +G HDF++F N R+ + V++++
Sbjct: 118 SRLAKPLPWQRHFCYTPRHPFSTELMQEGANLLIGTHDFASFANHGRDYN--STVRTIYT 175
Query: 226 FDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
D+++ G L + G+GFLY+ VRN+V LL +GK A PP+ + IL ++R+E
Sbjct: 176 LDIVDKGDSLSIICRGNGFLYKMVRNLVGALLDVGKGAYPPEHLLDILEQKNRREGPS-- 233
Query: 286 LSAPPHGLCLVEVKYNE 302
+AP +GL L V Y+
Sbjct: 234 -AAPAYGLSLHHVCYSS 249
>sp|B2G8U7|TRUA_LACRJ tRNA pseudouridine synthase A OS=Lactobacillus reuteri (strain JCM
1112) GN=truA PE=3 SV=1
Length = 256
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/261 (37%), Positives = 153/261 (58%), Gaps = 14/261 (5%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+++++ AYDGT ++G+Q Q + T++ ++ A+ ++ K + ++G+ RTD GVHA
Sbjct: 2 YRYKITFAYDGTNFSGFQIQPNKRTVEQTLKNAVNKIAKHPTPAIPVIGSGRTDAGVHAL 61
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
QVAHF P+ ES+ ALN +LP DI +++ +FHAR+SA K Y Y++
Sbjct: 62 NQVAHFDIPYHLSN-ESMRKALNSILPLDILIKKAELVDNDFHARYSAHRKTYRYRVDQG 120
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV----NVQRNDRLLNPVKSVF 224
++PF+R+Y H Y LN MR+AA+ VG HDF++FV + N R + +
Sbjct: 121 EFVNPFKRNYTSHFKYPLNLEKMRKAADDLVGTHDFTSFVASGSQAKSNVRTIENI--TI 178
Query: 225 RFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
+ D E+ + + G+GFLY QVR MVA LL+IG P D V ++L +DR LA+
Sbjct: 179 KRD--EVRNEVVFDFTGNGFLYNQVRIMVAFLLEIGSNQRPVDDVSRVLKAKDR-TLAR- 234
Query: 285 ALSAPPHGLCLVEVKY--NEE 303
++AP GL LV V Y N+E
Sbjct: 235 -MTAPASGLYLVNVDYGTNDE 254
>sp|A5VLH4|TRUA_LACRD tRNA pseudouridine synthase A OS=Lactobacillus reuteri (strain DSM
20016) GN=truA PE=3 SV=1
Length = 256
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/261 (37%), Positives = 153/261 (58%), Gaps = 14/261 (5%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+++++ AYDGT ++G+Q Q + T++ ++ A+ ++ K + ++G+ RTD GVHA
Sbjct: 2 YRYKITFAYDGTNFSGFQIQPNKRTVEQTLKNAVNKIAKHPTPAIPVIGSGRTDAGVHAL 61
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
QVAHF P+ ES+ ALN +LP DI +++ +FHAR+SA K Y Y++
Sbjct: 62 NQVAHFDIPYHLSN-ESMRKALNSILPLDILIKKAELVDNDFHARYSAHRKTYRYRVDQG 120
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV----NVQRNDRLLNPVKSVF 224
++PF+R+Y H Y LN MR+AA+ VG HDF++FV + N R + +
Sbjct: 121 EFVNPFKRNYTSHFKYPLNLEKMRKAADDLVGTHDFTSFVASGSQAKSNVRTIENI--TI 178
Query: 225 RFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKY 284
+ D E+ + + G+GFLY QVR MVA LL+IG P D V ++L +DR LA+
Sbjct: 179 KRD--EVRNEVVFDFTGNGFLYNQVRIMVAFLLEIGSNQRPVDDVSRVLKAKDR-TLAR- 234
Query: 285 ALSAPPHGLCLVEVKY--NEE 303
++AP GL LV V Y N+E
Sbjct: 235 -MTAPASGLYLVNVDYGTNDE 254
>sp|Q73F64|TRUA1_BACC1 tRNA pseudouridine synthase A 1 OS=Bacillus cereus (strain ATCC
10987) GN=truA1 PE=3 SV=1
Length = 247
Score = 173 bits (439), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + + ALN +LP DI + ++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQ-WNNALNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLLSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEINAIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 DDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 237 GLYLWQVNYN 246
>sp|Q6HPM7|TRUA1_BACHK tRNA pseudouridine synthase A 1 OS=Bacillus thuringiensis subsp.
konkukian (strain 97-27) GN=truA1 PE=3 SV=1
Length = 247
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI + ++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLVSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 DDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 237 GLYLWQVNYN 246
>sp|Q63H59|TRUA1_BACCZ tRNA pseudouridine synthase A 1 OS=Bacillus cereus (strain ZK /
E33L) GN=truA1 PE=3 SV=1
Length = 247
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI + ++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLVSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 DDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 237 GLYLWQVNYN 246
>sp|Q6I4Q2|TRUA1_BACAN tRNA pseudouridine synthase A 1 OS=Bacillus anthracis GN=truA1 PE=3
SV=1
Length = 247
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 145/250 (58%), Gaps = 8/250 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +AYDG + G+Q Q T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S + + +A LN +LP DI + ++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLVSKTA 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+R+Y Y Y L +R+A YF+G HDF++F + + + + + V++++ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
L G+GFLY VR +V LL +G+ + PD +P+ILA Q+R+ K AP H
Sbjct: 180 DDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGK---MAPGH 236
Query: 292 GLCLVEVKYN 301
GL L +V YN
Sbjct: 237 GLYLWQVNYN 246
>sp|Q5L3Q7|TRUA_GEOKA tRNA pseudouridine synthase A OS=Geobacillus kaustophilus (strain
HTA426) GN=truA PE=3 SV=1
Length = 258
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/254 (40%), Positives = 148/254 (58%), Gaps = 8/254 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ +IAYDGT ++G+Q Q T+Q E+ L R+ K + +R+ + RTD GVHA+GQV
Sbjct: 6 KCIIAYDGTHFSGYQIQPGKRTVQGEFEEVLRRMHKGTK--VRVAASGRTDAGVHAYGQV 63
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S E ALN LP DI VR + A +FHARFSAK+K Y YK++ A
Sbjct: 64 IHFDTPLSLSS-EQWKKALNAQLPDDIVVRFVQEADADFHARFSAKAKEYRYKVWTAAER 122
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+RHY Y L+ + M +A G HDF++F + + + + + V++++R +V
Sbjct: 123 DVFRRHYCAWHPYSLHISAMNEALRLLHGTHDFTSFCSAKTS--IEDRVRTMYRAEVKAD 180
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G +L+ GSGFLY VR +V +L+IG+ P + +LA +DR+ LA +AP
Sbjct: 181 GPMLEFRFVGSGFLYNMVRIIVGTVLEIGQGKRSPADISTLLAAKDRR-LA--GPTAPAE 237
Query: 292 GLCLVEVKYNEEHL 305
GL L V Y +E L
Sbjct: 238 GLYLWRVYYEDECL 251
>sp|Q8CXP1|TRUA_OCEIH tRNA pseudouridine synthase A OS=Oceanobacillus iheyensis (strain
DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=truA PE=3
SV=1
Length = 253
Score = 172 bits (435), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 150/253 (59%), Gaps = 7/253 (2%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ + ++YDG+ +AG+Q Q T+Q ++EKAL + K + +R+ + RTDTGVHA G
Sbjct: 3 RLKCTVSYDGSDFAGFQVQPDHRTVQGVLEKALYNMHK--GKSIRIQASGRTDTGVHAVG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF +P + ALN LLP D+R++++ EFHAR+S K K YHY + N+
Sbjct: 61 QVIHFDSPLEIPE-RNWKQALNTLLPDDVRIQKVEKKTEEFHARYSVKEKEYHYFVLNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ FQR Y YH KL+ M++A +Y G HDF++F + + + + + V++++
Sbjct: 120 DPNVFQRGYVYHEPRKLDLERMQEACQYLEGTHDFTSFSSAKSSVK-GSKVRTLYHVSCH 178
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G ++ GSGFLY VR M+++L+ +GK P+ + +LA+++R+++ K +
Sbjct: 179 QTGTNIEFIFRGSGFLYNMVRIMMSVLIDVGKGKRNPEDIIDLLASKNRQQIGK---TMA 235
Query: 290 PHGLCLVEVKYNE 302
P GL L V Y E
Sbjct: 236 PQGLYLWRVSYEE 248
>sp|A7Z0S0|TRUA_BACA2 tRNA pseudouridine synthase A OS=Bacillus amyloliquefaciens (strain
FZB42) GN=truA PE=3 SV=1
Length = 247
Score = 172 bits (435), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 101/250 (40%), Positives = 138/250 (55%), Gaps = 7/250 (2%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ IAYDG + G+Q Q T+Q +EKAL + K + + + + RTD+ VHA GQV
Sbjct: 4 KCTIAYDGHLFNGYQVQPGKRTVQSELEKALAVIHKTDGR-VPVYSSGRTDSDVHAAGQV 62
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP S G E ALN LLP DI V+ A FHARFSA K Y Y +Y +
Sbjct: 63 IHFDTPLSIPG-EKWPFALNALLPDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTEKHP 121
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+RHYAYH Y LN MR+A+ + VG HDF++F + + + V++++ D E
Sbjct: 122 DVFKRHYAYHFAYPLNVQKMREASRHLVGTHDFTSFCAA--DTAVQDKVRTIYELDWTET 179
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
LQ+ + G+GFLY VR + LL G PD V +L +DR+ + +AP H
Sbjct: 180 VDGLQMRITGNGFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGR---TAPGH 236
Query: 292 GLCLVEVKYN 301
GL L V Y+
Sbjct: 237 GLYLWSVCYD 246
>sp|O84469|TRUA_CHLTR tRNA pseudouridine synthase A OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=truA PE=3 SV=1
Length = 267
Score = 171 bits (433), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 144/250 (57%), Gaps = 10/250 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L IAY GT Y+GWQ+Q + +IQ ++E L ++ + ++ + RTD GVHA GQ+A
Sbjct: 7 LQIAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFR---ISVISSGRTDAGVHAQGQIA 63
Query: 113 HFITPFS--YDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
HF P + I LN LLP DI +R+ +FH+RFSA +K Y Y +
Sbjct: 64 HFHCPDHPHFTDPRQIQKMLNALLPHDIVIRDAVMTDEDFHSRFSAIAKEYRYTLSLLPK 123
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
P R + + YKLN M++AA+Y VG HDF++F N+ R + +++++ D+ E
Sbjct: 124 PLPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGRE--YSSTIRTLYTLDLSE 181
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
L+ + G+GFLY+ VRN+V LL IGK PP+ + +LAT+DR+ K SAPP
Sbjct: 182 QEHLVTVICRGNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRR---KGPPSAPP 238
Query: 291 HGLCLVEVKY 300
+GL L V Y
Sbjct: 239 YGLSLHHVCY 248
>sp|A4IJL9|TRUA_GEOTN tRNA pseudouridine synthase A OS=Geobacillus thermodenitrificans
(strain NG80-2) GN=truA PE=3 SV=1
Length = 253
Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/252 (39%), Positives = 144/252 (57%), Gaps = 8/252 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+ V+AYDGT ++G+Q Q T+Q E L R+ K +D+R+ + RTD GVHA+GQV
Sbjct: 6 KCVVAYDGTYFSGYQVQPGKRTVQGEFEGVLKRMHK--GDDVRITASGRTDAGVHAYGQV 63
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
HF TP + E ALN LP DI VR + A FHARFSAK+K Y Y ++ A
Sbjct: 64 IHFDTPLAL-SPEQWKKALNAQLPDDIAVRSVDEADSTFHARFSAKAKEYRYNVWTAAER 122
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
D F+RHY Y L M +A G HDF++F + + + + V+++++ ++
Sbjct: 123 DVFRRHYCAWHPYPLRVDAMSEALGLLKGTHDFTSFCSAKTV--IEDRVRTIYQAEMEVD 180
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G +LQ GSGFLY VR +V +L++G+ PPD + +LA +DR+ LA +AP
Sbjct: 181 GPMLQFRFVGSGFLYNMVRIIVGTVLEVGQGKRPPDDIEALLAAKDRR-LA--GPTAPAE 237
Query: 292 GLCLVEVKYNEE 303
GL L V Y+ E
Sbjct: 238 GLYLWRVYYDGE 249
>sp|Q5L6V3|TRUA_CHLAB tRNA pseudouridine synthase A OS=Chlamydophila abortus (strain
S26/3) GN=truA PE=3 SV=1
Length = 268
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 148/250 (59%), Gaps = 10/250 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
+++AY GT YAGWQ Q + +IQ ++E +L +V + + + + RTD VHA+GQVA
Sbjct: 6 ILLAYQGTAYAGWQRQPNDLSIQEVIENSLAQVVG---KRIPVTSSGRTDAEVHAFGQVA 62
Query: 113 HFITPF--SYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
HF P + SI LN LLP DI +R++ +FH+RFSA +K Y Y +
Sbjct: 63 HFSQPDHPQFSQASSIKKMLNALLPKDIVIRDVVLGDDKFHSRFSAIAKEYRYVLTRSPK 122
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
P++R++AY+ + L T LM++ A+Y +G HDF++F N R+ + ++++F D+++
Sbjct: 123 PLPWERYFAYYPRHHLKTDLMQEGAQYLLGTHDFASFANHGRD--YTSTIRTLFNLDIVD 180
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G + + G+GFLY+ VRN+V LL I + PP+ + +IL ++R++ +AP
Sbjct: 181 HGETVTIICRGNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILMQKNRRQGPP---AAPS 237
Query: 291 HGLCLVEVKY 300
H L L V Y
Sbjct: 238 HALSLYHVCY 247
>sp|B0BCA1|TRUA_CHLTB tRNA pseudouridine synthase A OS=Chlamydia trachomatis serovar L2b
(strain UCH-1/proctitis) GN=truA PE=3 SV=1
Length = 267
Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 144/250 (57%), Gaps = 10/250 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L IAY GT Y+GWQ+Q + +IQ +++ L ++ + ++ + RTD GVHA GQ+A
Sbjct: 7 LQIAYQGTSYSGWQYQPNALSIQEVLKTILKKIAGFR---ISVISSGRTDAGVHAQGQIA 63
Query: 113 HFITPFS--YDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
HF P + I LN LLP DI +R+ +FH+RFSA +K Y Y +
Sbjct: 64 HFHCPDHPHFTDPRQIQKMLNALLPHDIVIRDAVMTDGDFHSRFSAIAKEYRYTLSLLPK 123
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
P R + + YKLN M++AA+Y VG HDF++F N+ R + +++++ D+ E
Sbjct: 124 PLPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGRE--YSSTIRTLYTLDLSE 181
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
L+ + G+GFLY+ VRN+V LL IGK PP+ + +LAT+DR+ K SAPP
Sbjct: 182 QEHLVTVICRGNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRR---KGPPSAPP 238
Query: 291 HGLCLVEVKY 300
+GL L V Y
Sbjct: 239 YGLSLHHVCY 248
>sp|B0B836|TRUA_CHLT2 tRNA pseudouridine synthase A OS=Chlamydia trachomatis serovar L2
(strain 434/Bu / ATCC VR-902B) GN=truA PE=3 SV=1
Length = 267
Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 144/250 (57%), Gaps = 10/250 (4%)
Query: 53 LVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 112
L IAY GT Y+GWQ+Q + +IQ +++ L ++ + ++ + RTD GVHA GQ+A
Sbjct: 7 LQIAYQGTSYSGWQYQPNALSIQEVLKTILKKIAGFR---ISVISSGRTDAGVHAQGQIA 63
Query: 113 HFITPFS--YDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
HF P + I LN LLP DI +R+ +FH+RFSA +K Y Y +
Sbjct: 64 HFHCPDHPHFTDPRQIQKMLNALLPHDIVIRDAVMTDGDFHSRFSAIAKEYRYTLSLLPK 123
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
P R + + YKLN M++AA+Y VG HDF++F N+ R + +++++ D+ E
Sbjct: 124 PLPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGRE--YSSTIRTLYTLDLSE 181
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
L+ + G+GFLY+ VRN+V LL IGK PP+ + +LAT+DR+ K SAPP
Sbjct: 182 QEHLVTVICRGNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRR---KGPPSAPP 238
Query: 291 HGLCLVEVKY 300
+GL L V Y
Sbjct: 239 YGLSLHHVCY 248
>sp|Q3KLN5|TRUA_CHLTA tRNA pseudouridine synthase A OS=Chlamydia trachomatis serovar A
(strain HAR-13 / ATCC VR-571B) GN=truA PE=3 SV=1
Length = 267
Score = 168 bits (426), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 144/253 (56%), Gaps = 10/253 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
K L IAY GT Y+GWQ+Q + +IQ ++E L ++ + ++ + RTD GVHA G
Sbjct: 4 KIVLQIAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFR---ISVISSGRTDAGVHAQG 60
Query: 110 QVAHFITPFS--YDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 167
Q+AHF P + I LN LLP DI + + +FH+RFSA +K Y Y +
Sbjct: 61 QIAHFHCPDHPHFTDPRQIQKMLNALLPHDIVIHDAVMTDGDFHSRFSAIAKEYRYTLSL 120
Query: 168 DAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFD 227
P R + + YKLN M++AA+Y VG HDF++F N+ R + +++++ D
Sbjct: 121 LPKPLPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGRE--YSSTIRTLYTLD 178
Query: 228 VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
+ E L+ + G+GFLY+ VRN+V LL IGK PP+ + +LAT+DR+ K S
Sbjct: 179 LSEQEHLVTVICRGNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRR---KGPPS 235
Query: 288 APPHGLCLVEVKY 300
APP+GL L V Y
Sbjct: 236 APPYGLSLHHVCY 248
>sp|Q890R5|TRUA2_CLOTE tRNA pseudouridine synthase A 2 OS=Clostridium tetani (strain
Massachusetts / E88) GN=truA2 PE=3 SV=1
Length = 248
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/252 (38%), Positives = 139/252 (55%), Gaps = 11/252 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSP--PTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
RL + YDGT Y+GWQ Q TIQ +EKA+ TK E++ L+G+SRTD GVHA
Sbjct: 6 RLKVEYDGTNYSGWQKQKDKNIKTIQSSIEKAIEEATK---EEVELIGSSRTDAGVHALA 62
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
A+F T + G E ALN LP DI + E EFH+RF K Y YKI N
Sbjct: 63 YTANFKTCSTIPG-EKFKHALNRFLPEDIVILESEEVPMEFHSRFDCIGKTYVYKILNRP 121
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+ P QR+Y YH +L+ M +A+++ +G HDF+AF N L V+++ +++
Sbjct: 122 LFSPIQRNYIYHVKDELDINSMIEASKFLIGTHDFNAFKKSGGN--LKTTVRTITNINIL 179
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ ++++ V G GFLY VR + L+++G P+ + IL ++DR K + AP
Sbjct: 180 KSNDIVEIHVSGDGFLYNMVRIISGTLIEVGLSRRKPEDISIILQSKDR---CKAGMCAP 236
Query: 290 PHGLCLVEVKYN 301
GL L E+ YN
Sbjct: 237 ARGLYLKELFYN 248
>sp|A6LLJ7|TRUA_THEM4 tRNA pseudouridine synthase A OS=Thermosipho melanesiensis (strain
BI429 / DSM 12029) GN=truA PE=3 SV=1
Length = 244
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/244 (40%), Positives = 141/244 (57%), Gaps = 11/244 (4%)
Query: 56 AYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFI 115
+YDGT + G+Q Q + T+Q +EKAL R+ K E + GA RTD GVHA GQVA F
Sbjct: 9 SYDGTNFFGYQGQPNVRTVQGELEKALERIFK---ERIFTQGAGRTDAGVHANGQVAAFN 65
Query: 116 TPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQ 175
P I ALN LP DI V++ F+ RF AK +IYHY + + D F+
Sbjct: 66 CPIDRLAAIDIKNALNANLPEDIYVKKAWEVEKNFNPRFRAKKRIYHYLVSTNE-KDVFK 124
Query: 176 RHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEMGA-L 234
R+Y +H YKLN MR AA Y G+HDFS+F ++ + NP+++V+R ++ + L
Sbjct: 125 RNYVWHFKYKLNIEAMRIAARYLEGEHDFSSF---KKGNDKKNPIRTVYRIRILNVKKEL 181
Query: 235 LQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPHGLC 294
+ + VEG FL VRN+V L+++G P+ + K+L + R+E A +APPHGL
Sbjct: 182 ILIRVEGRSFLRSMVRNIVGSLVRVGLGQWTPEKIKKVLEARSRQEAAG---TAPPHGLY 238
Query: 295 LVEV 298
L +V
Sbjct: 239 LYKV 242
>sp|B3E0A0|TRUA_METI4 tRNA pseudouridine synthase A OS=Methylacidiphilum infernorum
(isolate V4) GN=truA PE=3 SV=1
Length = 255
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/250 (40%), Positives = 142/250 (56%), Gaps = 8/250 (3%)
Query: 51 WRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 110
++L ++Y G+ + GWQ Q PT+Q +E+A V K+ E + + GA RTD GVHA GQ
Sbjct: 8 YKLTLSYCGSGFHGWQRQGELPTVQRALEEA---VAKIWEEPIPVEGAGRTDAGVHAKGQ 64
Query: 111 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 170
VA F P + E + ALN LP +RV + EF ARF A SK Y Y ++ND V
Sbjct: 65 VASFAAPRKLEP-EVLKRALNYHLPDTVRVWDARIVPREFSARFDAVSKTYQYLLWNDPV 123
Query: 171 MDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIE 230
MDPF A+H ++ +M +AA F+GKH+F+AFV+ + NPV++V +E
Sbjct: 124 MDPFYLGRAWHIPRAMDVEMMNEAARLFLGKHNFAAFVS-NPGMPVKNPVRTVLDCFFLE 182
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G+L+ V+ GFLYR VRNMV L+++G + + KI Q R E +APP
Sbjct: 183 QGSLVFFNVKADGFLYRMVRNMVGALVKVGLGRLSRQELKKIFENQKRIEAFA---AAPP 239
Query: 291 HGLCLVEVKY 300
GL L+ V Y
Sbjct: 240 WGLYLLAVDY 249
>sp|Q65P74|TRUA_BACLD tRNA pseudouridine synthase A OS=Bacillus licheniformis (strain DSM
13 / ATCC 14580) GN=truA PE=3 SV=1
Length = 247
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 143/253 (56%), Gaps = 7/253 (2%)
Query: 49 FKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 108
+ + I+YDG + G+Q Q TIQ +EKAL + K +E + +V + RTD+GVHA
Sbjct: 1 MRMKCTISYDGHLFYGYQVQPGQRTIQDELEKALQTLHK-AKERIPVVSSGRTDSGVHAV 59
Query: 109 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 168
GQ HF +P S + +A LN LLP DI VR+ A +FHARFSAK K Y Y IY
Sbjct: 60 GQTIHFDSPLSIPEAKWPYA-LNALLPDDISVRKAEAVNDQFHARFSAKRKEYRYMIYRG 118
Query: 169 AVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDV 228
D F+R+YAYH Y L+ +++A+ Y VG HDF++F + + + V++V +
Sbjct: 119 RHPDVFKRYYAYHVPYDLDMEKVKEASRYLVGTHDFTSFCATKTE--VKDKVRTVHELEW 176
Query: 229 IEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ G LQ+ + GSGFLY VR + LL +G P + K++ ++R + +A
Sbjct: 177 SDTGDGLQMRIVGSGFLYNMVRIIAGTLLDVGTGKFSPGDIEKMILAKNRDAAGR---TA 233
Query: 289 PPHGLCLVEVKYN 301
P HGL L V Y+
Sbjct: 234 PAHGLYLWRVIYD 246
>sp|B9M6W5|TRUA_GEOSF tRNA pseudouridine synthase A OS=Geobacter sp. (strain FRC-32)
GN=truA PE=3 SV=1
Length = 244
Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 138/249 (55%), Gaps = 9/249 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+I YDGT Y GWQ Q + TIQ ++E++L K+ + +RL + RTD GVHA G V
Sbjct: 5 KLIIEYDGTAYCGWQLQPNGITIQQVIEESL---EKMLGQSVRLQSSGRTDAGVHALGMV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T + + LN LLPPDI +R+ S F+ R A SK Y Y IYN
Sbjct: 62 AVFKTQKDLP-VRAFSDGLNCLLPPDIAIRDASEVPLSFNPRADAISKHYRYTIYNSKRR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P R ++H LN LM+ A +FVG+HDF+AF N ++ +F V ++
Sbjct: 121 SPLTRLNSWHLRGILNMELMQLGASHFVGEHDFAAF--RASNCVAKTTIRRMFHVSVAKV 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G + ++V GSGFL VR + L+ +G+ + P +P +LA DR + ++APP
Sbjct: 179 GDSVIIDVHGSGFLKNMVRVIAGTLVAVGQGKLDPSAIPGLLAGGDR---SASGITAPPQ 235
Query: 292 GLCLVEVKY 300
GLCL+EV Y
Sbjct: 236 GLCLMEVFY 244
>sp|B5EFM8|TRUA_GEOBB tRNA pseudouridine synthase A OS=Geobacter bemidjiensis (strain Bem
/ ATCC BAA-1014 / DSM 16622) GN=truA PE=3 SV=1
Length = 250
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/252 (38%), Positives = 138/252 (54%), Gaps = 8/252 (3%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L+I YDGT Y GWQ Q + T+Q ++++AL + E L G+ RTD GVHA G V
Sbjct: 5 KLIIEYDGTAYCGWQVQPNGRTVQEVLQEAL---AAMLGEKTPLHGSGRTDAGVHARGMV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T + L + LN LLP DI VRE EFH RF A +K Y Y I D +
Sbjct: 62 ACFKTDKAMP-LRAFREGLNCLLPGDIAVREACEVPLEFHPRFDAHAKHYRYTILLDDLR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P R + KL+ MR A FVG+HDF+AF N V+ ++ D+++
Sbjct: 121 SPLSRLTVWRLKGKLDIQAMRAACAAFVGEHDFAAF--RASNCAAKTTVRRIYSMDLVQE 178
Query: 232 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPPH 291
G LL L+V+GSGFL VR + L+++G+ + V ++L DR++ ++ PP
Sbjct: 179 GCLLHLDVKGSGFLKNMVRIITGTLIEVGQGKKSVEDVARLLQGGDRQQ--NSGMTVPPQ 236
Query: 292 GLCLVEVKYNEE 303
GLCL++V Y E+
Sbjct: 237 GLCLMQVYYQEK 248
>sp|B1MVY3|TRUA_LEUCK tRNA pseudouridine synthase A OS=Leuconostoc citreum (strain KM20)
GN=truA PE=3 SV=1
Length = 260
Score = 165 bits (417), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 153/260 (58%), Gaps = 13/260 (5%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPP-----TIQCIVEKALIRVTKLEREDLRLVGASRTDTG 104
+++ ++AYDG+ + G+Q QT T+Q + KA+ ++ K +++VGASRTDTG
Sbjct: 3 RYKAIVAYDGSNFFGFQVQTKSGVEVQRTVQGELNKAVNQMAKQPVTPIKVVGASRTDTG 62
Query: 105 VHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYK 164
VHA+GQV HF PF + + + LN LLP DI ++ ++ +FHARFS +K Y Y+
Sbjct: 63 VHAFGQVVHFDLPFDINPV-GVSKGLNTLLPRDILIKAVTKVSDDFHARFSTHAKRYFYR 121
Query: 165 IYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVF 224
+ A DPF+RHY H + L+T+ +++A +G+HDF++F ++ + V+++
Sbjct: 122 VSTTAFTDPFKRHYTGHFHWHLDTSRIQEALPDLIGEHDFASF--AASGNQTASTVRTIT 179
Query: 225 RFDVIEM--GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELA 282
+IE L EG+ FLY Q+R MV +LL+IG + +++A +DR E A
Sbjct: 180 SAQLIEKPDEQELVFVFEGNAFLYNQIRIMVGVLLEIGNGRREIHDIQRLIAVKDR-EQA 238
Query: 283 KYALSAPPHGLCLVEVKYNE 302
++ +AP GL L E+ Y E
Sbjct: 239 RF--TAPASGLYLDEIDYGE 256
>sp|Q8XHV5|TRUA2_CLOPE tRNA pseudouridine synthase A 2 OS=Clostridium perfringens (strain
13 / Type A) GN=truA2 PE=3 SV=1
Length = 244
Score = 165 bits (417), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 141/250 (56%), Gaps = 11/250 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L I YDGT Y GWQ Q TIQ VE+A+ +VTK E++ ++G+SRTD+GVHA V
Sbjct: 5 KLTIEYDGTSYFGWQKQPIGNTIQQKVEEAIKKVTK---EEVEILGSSRTDSGVHAKAYV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A+F T + G ++ AALN LP DI + +FHAR+ K Y Y I N
Sbjct: 62 ANFKTNSNIPG-KNFKAALNSKLPKDIVIINSEEVAEDFHARYMTTGKTYCYTILNREEP 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQR-NDRLLNPVKSVFRFDVIE 230
+R+Y YH +L+ M++A +YF+GKHDF AF QR + V+++ +
Sbjct: 121 PALERNYVYHVKKQLDVESMKEACKYFLGKHDFKAF---QRPGGTVKTSVRTITDIHIET 177
Query: 231 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAPP 290
G +++ V GFLY VR +V LL++G+ P+ + +++ + DRK K + PP
Sbjct: 178 EGNKIKIYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRK---KAGICVPP 234
Query: 291 HGLCLVEVKY 300
GLCL +V Y
Sbjct: 235 TGLCLEKVFY 244
>sp|Q2RFT1|TRUA_MOOTA tRNA pseudouridine synthase A OS=Moorella thermoacetica (strain
ATCC 39073) GN=truA PE=3 SV=1
Length = 246
Score = 164 bits (416), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 102/251 (40%), Positives = 135/251 (53%), Gaps = 11/251 (4%)
Query: 52 RLVIAYDGTRYAGWQFQTSP--PTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++ +AYDG+ YAGWQ Q PT+Q V AL R+T E++ V A RTD GVHA G
Sbjct: 5 KITLAYDGSNYAGWQVQPEAHGPTVQGEVAAALKRLTG---EEITPVAAGRTDAGVHARG 61
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV F T +E ALN +LP DI E P+FHAR+ AK K Y Y IYN+
Sbjct: 62 QVISFSTRARIP-VERWPLALNSVLPADIAALEAVEVAPDFHARYCAKRKWYRYTIYNNR 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
V D F R Y++H L+ M +AA Y G HDF +F R + V + V
Sbjct: 121 VPDVFCRRYSWHLRQPLDVIAMARAAAYLQGCHDFRSFCAAGSPVRHFE--RQVQQASVS 178
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
+ G + +V GFLY VR MV L++IG+ + P+ +P ILA + R+ K +AP
Sbjct: 179 QNGPFIYFDVIADGFLYHMVRIMVGTLVEIGRRRLVPEAIPAILAARSRE---KAGPTAP 235
Query: 290 PHGLCLVEVKY 300
GLCL V+Y
Sbjct: 236 ARGLCLERVEY 246
>sp|P60350|TRUA_GEOSL tRNA pseudouridine synthase A OS=Geobacter sulfurreducens (strain
ATCC 51573 / DSM 12127 / PCA) GN=truA PE=3 SV=1
Length = 244
Score = 164 bits (416), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 97/252 (38%), Positives = 139/252 (55%), Gaps = 15/252 (5%)
Query: 52 RLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 111
+L++ YDGT YAGWQ Q + +IQ +VE AL R+ K E +RL + RTD GVHA G V
Sbjct: 5 KLILEYDGTNYAGWQLQPNGLSIQEVVEGALARLLK---EPVRLRASGRTDAGVHARGMV 61
Query: 112 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 171
A F T S L + LN LLPPDI VR A+P F+ RF+A K Y Y I+
Sbjct: 62 AAFDTDRSIP-LRAFSDGLNALLPPDIAVRSADEALPGFNPRFAATGKHYRYTIHRGERR 120
Query: 172 DPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVIEM 231
P R ++H LN MR+AA + G+ DF++F R ++ R D +E+
Sbjct: 121 SPLVRLQSWHVRGALNLAAMREAARHLTGERDFASFRTAGCAAR-----TTIRRVDAVEI 175
Query: 232 ---GALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
G +L ++V GSGFL VR MV L+++G+ + P+ V +++ + +A
Sbjct: 176 SDDGEMLTVDVHGSGFLRNMVRIMVGTLVEVGRGKLTPEHVAQMVVCPG---VVPAGPTA 232
Query: 289 PPHGLCLVEVKY 300
PP GLCL +V++
Sbjct: 233 PPQGLCLQKVRF 244
>sp|Q6I3T8|TRUA2_BACAN tRNA pseudouridine synthase A 2 OS=Bacillus anthracis GN=truA2 PE=3
SV=1
Length = 245
Score = 164 bits (415), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 139/251 (55%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E + + E E ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETE---IIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +V+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYSLEVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P+IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>sp|Q9CI80|TRUA_LACLA tRNA pseudouridine synthase A OS=Lactococcus lactis subsp. lactis
(strain IL1403) GN=truA PE=3 SV=1
Length = 253
Score = 164 bits (415), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 144/254 (56%), Gaps = 8/254 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+++ IAYDGT +AG+Q QT+ T+Q +EK L ++ E + L G+ RTD+GVHA+G
Sbjct: 3 RYKATIAYDGTDFAGFQSQTNQRTVQKEIEKILTKLNSFE--PVILQGSGRTDSGVHAFG 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF LE + L+ P DI V+++ ++HAR+ K Y Y + N
Sbjct: 61 QVIHFDLKGKVRDLERLRFGLDTQTPADIAVKKVELVPDDWHARYQKHEKTYEYYLENSI 120
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
PFQRH + Y LN M++A VG+HDF+ F + + V+++++ ++I
Sbjct: 121 TRSPFQRHSKAYFRYPLNFERMQEAMSKLVGEHDFTGF--TASGSSVDDKVRTIYQAEII 178
Query: 230 EMGAL-LQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSA 288
+ + G+GFLY+QVRNMV +++IG + +P + KIL +++R + A +A
Sbjct: 179 RLDEENFKFIFRGNGFLYKQVRNMVGTVIKIGNDRMPVSQIDKILTSKNR-DFA--GPTA 235
Query: 289 PPHGLCLVEVKYNE 302
P GL L EVKY E
Sbjct: 236 APEGLYLKEVKYAE 249
>sp|C0ZIL2|TRUA_BREBN tRNA pseudouridine synthase A OS=Brevibacillus brevis (strain 47 /
JCM 6285 / NBRC 100599) GN=truA PE=3 SV=1
Length = 244
Score = 164 bits (415), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 144/251 (57%), Gaps = 9/251 (3%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
+ R V+AYDGT ++G+Q Q T+Q +E AL RVT ED+++ G+ RTD GVHA G
Sbjct: 3 RLRCVLAYDGTDFSGFQVQPDQVTVQGEIEAALNRVTG---EDIQVFGSGRTDAGVHARG 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QV HF T S ++ LN LP I +R + FHARF + K Y Y I N+
Sbjct: 60 QVIHFDTA-SNIPMDKWRFVLNNQLPDSIVIRTVEEVDASFHARFDVQVKEYRYCIDNNP 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
V D F+ YA H + L+ M+QAA Y VG+HDF++F + + + + V++V+ V
Sbjct: 119 VADVFRHRYADHVRFPLDVDAMQQAAHYLVGEHDFTSFCSAKT--YVEDKVRTVYGLSVE 176
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
++G + + G+GFLY VR +V L+++G+ P + +ILA DR++ K +AP
Sbjct: 177 KIGDEVWVTCRGNGFLYNMVRIIVGTLVEVGQGKRNPAELREILAACDREKAGK---TAP 233
Query: 290 PHGLCLVEVKY 300
GL + EV Y
Sbjct: 234 AKGLTMWEVVY 244
>sp|Q63GF1|TRUA2_BACCZ tRNA pseudouridine synthase A 2 OS=Bacillus cereus (strain ZK /
E33L) GN=truA2 PE=3 SV=1
Length = 245
Score = 164 bits (414), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 142/251 (56%), Gaps = 10/251 (3%)
Query: 51 WRLVIAYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMIGKEIEIIGCSRTDAGVHALN 60
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 119
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
+PF R Y+ H KLN M++AA++ VG HDF+AF N + + + V+ V+ +V+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYSLEVM 177
Query: 230 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALSAP 289
E +Q+ V G+GFL+ VR +V L+++G + + +P+IL + R ++ A
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQI---NCLAE 234
Query: 290 PHGLCLVEVKY 300
GL L V++
Sbjct: 235 ASGLYLENVEF 245
>sp|Q88XU9|TRUA_LACPL tRNA pseudouridine synthase A OS=Lactobacillus plantarum (strain
ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=truA PE=3 SV=1
Length = 262
Score = 164 bits (414), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 149/261 (57%), Gaps = 12/261 (4%)
Query: 50 KWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
++++V+AYDGT +AG+Q Q T++ +V KA+ ++ K E + + GA RTD GVHA+G
Sbjct: 4 RYKVVLAYDGTNFAGFQRQPHQRTVEQVVTKAVNKMAKDPVEPIVIYGAGRTDAGVHAFG 63
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
Q HF P+ + E + LN +LP D V+ +S +FHAR+ K Y Y+ Y +
Sbjct: 64 QTLHFDLPYEINP-EGVRRGLNSMLPMDTIVKAVSIVPNDFHARYDTVGKRYWYRAYQNE 122
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFV--NVQRND--RLLNPVKSVFR 225
+DPF+RHY H + + ++QA G+HDFS FV Q +D R + K+
Sbjct: 123 FVDPFKRHYTGHFKFAADIDRIQQAIGDLEGRHDFSTFVASGSQAHDHVREIYSAKAWAL 182
Query: 226 FDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285
D E +Q E GSGFLY QVR MVA+L++IG+ D +P +LA +DR++
Sbjct: 183 PDERE----IQFEFCGSGFLYNQVRIMVAVLMEIGQGRRAVDCIPALLAAKDREQARG-- 236
Query: 286 LSAPPHGLCLVEVKYNEEHLR 306
+AP GL + +V Y + L+
Sbjct: 237 -TAPAAGLYMKKVYYEQNELQ 256
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,455,927
Number of Sequences: 539616
Number of extensions: 5457424
Number of successful extensions: 14343
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 11617
Number of HSP's gapped (non-prelim): 664
length of query: 330
length of database: 191,569,459
effective HSP length: 118
effective length of query: 212
effective length of database: 127,894,771
effective search space: 27113691452
effective search space used: 27113691452
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)