Query 043662
Match_columns 330
No_of_seqs 126 out of 1122
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 12:05:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043662.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043662hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dj0_A Pseudouridine synthase 100.0 2.1E-81 7.1E-86 588.3 32.0 254 46-309 1-254 (264)
2 1vs3_A TRNA pseudouridine synt 100.0 5.2E-81 1.8E-85 581.2 25.1 243 48-302 1-248 (249)
3 2v9k_A Uncharacterized protein 95.7 0.12 4.1E-06 52.2 13.1 156 72-246 317-486 (530)
4 2hh8_A Hypothetical protein YD 18.8 56 0.0019 27.4 2.2 31 181-211 69-100 (149)
5 2l0c_A Putative membrane prote 18.7 51 0.0018 25.5 1.9 17 54-70 70-86 (97)
6 3q6c_A Probable receptor YHHM; 18.5 54 0.0019 24.7 1.9 16 54-69 67-82 (83)
7 2aus_C Pseudouridine synthase; 17.3 5.9E+02 0.02 23.6 9.3 101 140-261 90-195 (334)
8 1k8w_A TRNA pseudouridine synt 17.2 5.6E+02 0.019 23.9 9.0 121 138-260 67-207 (327)
9 3rd4_A Uncharacterized protein 16.9 61 0.0021 25.3 1.9 16 54-69 71-86 (100)
10 2apo_A Probable tRNA pseudouri 13.7 7.3E+02 0.025 23.3 8.9 100 140-260 110-214 (357)
No 1
>1dj0_A Pseudouridine synthase I; alpha/beta fold, RNA-binding motif, RNA-modifying enzyme, lyase; 1.50A {Escherichia coli} SCOP: d.265.1.1 PDB: 2nqp_A 2nr0_A 2nre_A
Probab=100.00 E-value=2.1e-81 Score=588.26 Aligned_cols=254 Identities=35% Similarity=0.543 Sum_probs=237.3
Q ss_pred CCcceEEEEEEEeCCCceeeeeCCCCCcHHHHHHHHHHHhhcccCcceeeeeccccCccccccccEEEEEeCCCCCCHHH
Q 043662 46 FPGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFITPFSYDGLES 125 (330)
Q Consensus 46 ~~~~r~~l~v~YdGt~y~G~Q~Q~~~~TVq~~Le~AL~k~~~i~~~~i~~~~agRTD~GVHA~~qv~~f~~~~~~~~~~~ 125 (330)
+||+||+|.|+||||+|+|||+||+.+|||++||+||.++++ +++.+++||||||||||++||+||+++... +.+.
T Consensus 1 ~Pm~r~~l~i~YdGt~y~GwQ~Q~~~~TVq~~Le~AL~~~~~---~~v~~~~agRTDaGVHA~gqv~~f~~~~~~-~~~~ 76 (264)
T 1dj0_A 1 PPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN---EPITVFCAGRTDAGVHGTGQVVHFETTALR-KDAA 76 (264)
T ss_dssp CCCEEEEEEEEECCTTSSCSCCTTCSSCHHHHHHHHHHHHHT---SCCCEEESSCCCTTCEEEEEEEEEEESCCC-CHHH
T ss_pred CCccEEEEEEEEeCCCceeEEECcCCCCHHHHHHHHHHHHhC---CCeEEEEeccCCCCCchhhEEEEEEECCCC-CHHH
Confidence 368899999999999999999999999999999999999975 689999999999999999999999998764 5788
Q ss_pred HHHHHHhcCCCCeEEEEEEecCCCcccccccCceEEEEEeccCCCCCcccCCeeeeecCCCCHHHHHHHHhhcccccccc
Q 043662 126 IHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFS 205 (330)
Q Consensus 126 l~~~lN~~LP~dIrV~~i~~v~~~FhaR~~a~~R~Y~Y~i~~~~~~~pf~~~~~~~~~~~lDi~~m~~a~~~f~G~HDF~ 205 (330)
+..+||+.||+||+|+++++|+++|||||+|++|+|+|+|++....+||.++|.|++..+||+++|++|++.|+|+|||+
T Consensus 77 ~~~~lN~~LP~dI~V~~~~~V~~~FhARf~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~lD~~~M~~aa~~l~G~HDF~ 156 (264)
T 1dj0_A 77 WTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFT 156 (264)
T ss_dssp HHHHHHHTSCTTEEEEEEEECCTTCCTTTTCCEEEEEEEEECSSSCCCTTTTSSEECCSCCCHHHHHHHHGGGCEEEECG
T ss_pred HHHHHHhhCCcCeEEEEEEeCCCCCCcccccccEEEEEEEccCCCCChhHcCceEeeCCCCCHHHHHHHHHHhcCcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCeEEEEEEEEEEeCcEEEEEEEeCcchhHHHHHHHHHHHHHhcCCCCcccHHHHHhcCCcchhccCC
Q 043662 206 AFVNVQRNDRLLNPVKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYA 285 (330)
Q Consensus 206 ~F~~~~~~~~~~~~~R~I~~~~v~~~~~~v~~~I~G~sFL~~qVR~MVG~ll~vg~G~~~~~~i~~~L~~~~r~~~~~~~ 285 (330)
|||+..+ +.++++|+|++++|.+.++++.|+|+|+||||||||+|||+|++||+|++++++|+++|+.++|... .
T Consensus 157 ~F~~~~~--~~~s~vR~I~~~~v~~~~~~i~~~i~g~~FL~~mVR~mvG~L~~vG~G~~~~~~i~~~L~~~~r~~~---~ 231 (264)
T 1dj0_A 157 SFRAVQC--QSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLA---A 231 (264)
T ss_dssp GGCCTTC--CCSCCEEEEEEEEEEEETTEEEEEEEESCCCTTHHHHHHHHHHHHHTTSSCTTHHHHHHHHCCGGGS---C
T ss_pred HhccCCC--CCCCcEEEEEEEEEEECCCEEEEEEEEchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCCCcccC---c
Confidence 9997754 4578999999999999999999999999999999999999999999999999999999999988654 3
Q ss_pred CCcCCCCceEeeeecCCCCCCCCC
Q 043662 286 LSAPPHGLCLVEVKYNEEHLRLPA 309 (330)
Q Consensus 286 ~~APa~GL~L~~V~Y~~~~~~~~~ 309 (330)
++|||+||||++|.|++. +.++.
T Consensus 232 ~~APa~GL~L~~V~Y~~~-~~~~~ 254 (264)
T 1dj0_A 232 ATAKAEGLYLVAVDYPDR-YDLPK 254 (264)
T ss_dssp CCCCSTTEEEEEEECCGG-GCCCC
T ss_pred CccCCCCcEEeeeccCch-hcccc
Confidence 699999999999999754 34443
No 2
>1vs3_A TRNA pseudouridine synthase A; TRUA, tRNA modification, structural NPPSFA, national project on protein structural and function analyses; 2.25A {Thermus thermophilus}
Probab=100.00 E-value=5.2e-81 Score=581.21 Aligned_cols=243 Identities=34% Similarity=0.481 Sum_probs=229.4
Q ss_pred cceEEEEEEEeCCCceeeeeCCCC-CcHHHHHHHHHHHhhcccCcceeeeeccccCccccccccEEEEEeCCCCCCHHHH
Q 043662 48 GFKWRLVIAYDGTRYAGWQFQTSP-PTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFITPFSYDGLESI 126 (330)
Q Consensus 48 ~~r~~l~v~YdGt~y~G~Q~Q~~~-~TVq~~Le~AL~k~~~i~~~~i~~~~agRTD~GVHA~~qv~~f~~~~~~~~~~~l 126 (330)
|+||+|.|+||||+|+|||+||+. +|||++||+||.++ . +++.+++||||||||||++||+||+++.+. +++.+
T Consensus 1 M~r~~l~i~YdGt~y~GwQ~Q~~~~~TVq~~Le~AL~~~-~---~~v~~~~agRTDaGVHA~gqv~~f~~~~~~-~~~~~ 75 (249)
T 1vs3_A 1 MRRLLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGI-G---ALPKAVAAGRTDAGVHALAMPFHVDVESAI-PVEKV 75 (249)
T ss_dssp CEEEEEEEEECGGGCSBSSCCCTTCCCHHHHHHHHGGGG-T---BCSCCEESSCCBTTCEEEEEEEEEEECSCC-CGGGH
T ss_pred CcEEEEEEEEECCCceeEeECCCCCCCHHHHHHHHHHHc-C---CcceEEEeccCcCCcCccccEEEEEECCCC-CHHHH
Confidence 468999999999999999999999 99999999999999 3 689999999999999999999999998764 56789
Q ss_pred HHHHHhcCCCCeEEEEEEecCCCcccccccCceEEEEEeccCCCCCcccCCeeeeecCCCCHHHHHHHHhhccccccccc
Q 043662 127 HAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSA 206 (330)
Q Consensus 127 ~~~lN~~LP~dIrV~~i~~v~~~FhaR~~a~~R~Y~Y~i~~~~~~~pf~~~~~~~~~~~lDi~~m~~a~~~f~G~HDF~~ 206 (330)
..+||+.||+||+|+++.+|+++|||||+|++|+|+|+|++....+||.+++.|++..+||+++|++|++.|+|+|||+|
T Consensus 76 ~~~lN~~LP~dI~V~~~~~v~~~FhARf~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~ldi~~m~~aa~~l~G~HDF~~ 155 (249)
T 1vs3_A 76 PEALNRLLPEDLKVVGAREVAPDFHARKDALWRAYRYRILVRPHPSPLLRHRALWVRRPLDLEAMEEALSLLLGRHNFLG 155 (249)
T ss_dssp HHHHHHHSCTTEEEEEEEEECTTCCTTTTCSEEEEEEEEEECSSCCTTTTTTSEEECSCCCHHHHHHHHHHHSEEEEGGG
T ss_pred HHHHHhcCCcCEEEEEEEECCCCCCcccccccEEEEEEEccCCCCChhhCCeeEEeCCCCCHHHHHHHHHHhcCceeHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCeEEEEEEEEE----EeCcEEEEEEEeCcchhHHHHHHHHHHHHHhcCCCCcccHHHHHhcCCcchhc
Q 043662 207 FVNVQRNDRLLNPVKSVFRFDVI----EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELA 282 (330)
Q Consensus 207 F~~~~~~~~~~~~~R~I~~~~v~----~~~~~v~~~I~G~sFL~~qVR~MVG~ll~vg~G~~~~~~i~~~L~~~~r~~~~ 282 (330)
||+..+ ++++|+|++++|. +.++++.|+|+|+||||||||+|||+|++||+|++++++|+++|+.++|...
T Consensus 156 F~~~~~----~~~vR~I~~~~v~~~~~~~~~~i~~~i~g~~FL~~mVR~mvG~l~~vg~g~~~~~~i~~~L~~~~r~~~- 230 (249)
T 1vs3_A 156 FAKEET----RPGERELLEARLQVAEGEAGLEVRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPESLKAILKTADRRLA- 230 (249)
T ss_dssp GCSSCC----SCCEEEEEEEEEEEEECSSSEEEEEEEEESCCCTTHHHHHHHHHHHHHHSSSCGGGHHHHHHHCCGGGS-
T ss_pred eecCCC----CCCCcEEEEEEEEeccccCCCEEEEEEEEChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCCCcccC-
Confidence 997643 7899999999998 6778999999999999999999999999999999999999999999988654
Q ss_pred cCCCCcCCCCceEeeeecCC
Q 043662 283 KYALSAPPHGLCLVEVKYNE 302 (330)
Q Consensus 283 ~~~~~APa~GL~L~~V~Y~~ 302 (330)
.++|||+||||++|.|++
T Consensus 231 --~~~APa~GL~L~~v~Y~~ 248 (249)
T 1vs3_A 231 --GPTAPAHGLYFVEAAYPE 248 (249)
T ss_dssp --CCCCCGGGEEEEEEECCC
T ss_pred --cCccCCCCcEEeeeeCCC
Confidence 369999999999999975
No 3
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domai; HET: EPE; 2.0A {Homo sapiens}
Probab=95.67 E-value=0.12 Score=52.21 Aligned_cols=156 Identities=13% Similarity=0.201 Sum_probs=102.6
Q ss_pred CcHHHHHHHHHHHhhcccCcceeeeeccccCcccccccc----EEEEEeCCCC----CCHHHHHHHHHhcCCCCeEEEEE
Q 043662 72 PTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ----VAHFITPFSY----DGLESIHAALNGLLPPDIRVREI 143 (330)
Q Consensus 72 ~TVq~~Le~AL~k~~~i~~~~i~~~~agRTD~GVHA~~q----v~~f~~~~~~----~~~~~l~~~lN~~LP~dIrV~~i 143 (330)
.|||+.|...+..... .....+.+|||-|..|=-+|. |+.+.=|... .+++.+.+.+|.. -..|.|.++
T Consensus 317 ~SVee~I~~~i~~~f~--~~~~~Fh~sGREDvDVRmLG~GRPFvlEi~~P~r~~~~~~dl~~le~~IN~~-~~~V~V~~L 393 (530)
T 2v9k_A 317 SSVEELISDHLLAVFK--AESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNS-SNKIQVRDL 393 (530)
T ss_dssp CCHHHHHHTTHHHHHT--CSEEEEEESSCCCTTCEEEEEEEEEEEEEESCSCCCCCHHHHHHHHHHHHTT-CSSEEEEEE
T ss_pred CCHHHHHHHHHHHhcC--CCeEEEeecCCCCCceeecCCCCcEEEEecCccccccchhHHHHHHHHHhcc-CCcEEEEee
Confidence 6999999988888775 368999999999999999998 5555434322 1356677889983 345999999
Q ss_pred EecCCCcccccc----cCceEEEEEeccCCCCCcccCCeeeeecCCCCHHHHHHHHhhccccccccccccc-ccCCCCCC
Q 043662 144 SAAVPEFHARFS----AKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNV-QRNDRLLN 218 (330)
Q Consensus 144 ~~v~~~FhaR~~----a~~R~Y~Y~i~~~~~~~pf~~~~~~~~~~~lDi~~m~~a~~~f~G~HDF~~F~~~-~~~~~~~~ 218 (330)
..++..=-.+.. -+.|+|.=.+.. ...++.+.++++.. |.|---+.---.+ ........
T Consensus 394 ~~v~~~~~~~ik~ge~~~~K~Y~alv~~---------------~~~v~~e~l~~~~~-l~~l~I~QrtP~RV~hRR~~~~ 457 (530)
T 2v9k_A 394 QLVTREAIGHMKEGEEEKTKTYSALIWT---------------NKAIQKKDIEFLND-IKDLKIDQKTPLRVLHRRPLAV 457 (530)
T ss_dssp EEECTHHHHHHHHHHHHCCEEEEEEEEE---------------SSCCCHHHHGGGGG-CCSEEEEEECCGGGTTTSCCCE
T ss_pred EEEcHHHHHHHhcccccCCeEEEEEEEE---------------cCCCCHHHHHHHHh-cCCceeeccCCeEEEEecCCCc
Confidence 988753211221 235777755533 34577777877765 6652221110000 00011123
Q ss_pred CeEEEEEEEEEE-eCcEEEEEEEeCcchh
Q 043662 219 PVKSVFRFDVIE-MGALLQLEVEGSGFLY 246 (330)
Q Consensus 219 ~~R~I~~~~v~~-~~~~v~~~I~G~sFL~ 246 (330)
..|+|+++++.. ++..+.+.|..++=+|
T Consensus 458 R~R~I~~i~~~~~~~~~~~l~i~~eaGtY 486 (530)
T 2v9k_A 458 RARVIHFMETQYVDEHHFRLHLKTQAGTY 486 (530)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEECTTCC
T ss_pred cceEEEEEEEEEecCCEEEEEEEecCCCE
Confidence 578999999876 5678899999998666
No 4
>2hh8_A Hypothetical protein YDFO; structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Escherichia coli} SCOP: d.358.1.1
Probab=18.80 E-value=56 Score=27.38 Aligned_cols=31 Identities=6% Similarity=0.108 Sum_probs=25.2
Q ss_pred eecCCCCHHHHHHHHhh-cccccccccccccc
Q 043662 181 HSVYKLNTTLMRQAAEY-FVGKHDFSAFVNVQ 211 (330)
Q Consensus 181 ~~~~~lDi~~m~~a~~~-f~G~HDF~~F~~~~ 211 (330)
.+....|.++++++++. ..|+.||..||...
T Consensus 69 ~Va~~~n~~~ik~~lk~hQaG~tdF~tFC~~~ 100 (149)
T 2hh8_A 69 SVKFSKDRHLIETTSNKLKSREITFQEYRRNL 100 (149)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred eecCcCCHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 34556899999998877 57999999999753
No 5
>2l0c_A Putative membrane protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Salmonella enterica subsp}
Probab=18.74 E-value=51 Score=25.54 Aligned_cols=17 Identities=35% Similarity=0.814 Sum_probs=14.9
Q ss_pred EEEEeCCCceeeeeCCC
Q 043662 54 VIAYDGTRYAGWQFQTS 70 (330)
Q Consensus 54 ~v~YdGt~y~G~Q~Q~~ 70 (330)
.+.|.||+|-||++.++
T Consensus 70 ~Lt~QGTRfl~Fer~~~ 86 (97)
T 2l0c_A 70 TLSYKGTRFVGFVSRTP 86 (97)
T ss_dssp EEEEETTEEEEEECSSC
T ss_pred EEEEeeeeEEeeecCCC
Confidence 48999999999998765
No 6
>3q6c_A Probable receptor YHHM; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.60A {Klebsiella variicola at-22}
Probab=18.47 E-value=54 Score=24.74 Aligned_cols=16 Identities=19% Similarity=0.600 Sum_probs=13.7
Q ss_pred EEEEeCCCceeeeeCC
Q 043662 54 VIAYDGTRYAGWQFQT 69 (330)
Q Consensus 54 ~v~YdGt~y~G~Q~Q~ 69 (330)
.+.|.||+|.||...+
T Consensus 67 ~Lt~QGTRF~~F~~~~ 82 (83)
T 3q6c_A 67 MLSYKGTAFVAFTPDP 82 (83)
T ss_dssp EEEEETTEEEEEEECC
T ss_pred EEEEeeeEEEEEecCC
Confidence 4899999999998754
No 7
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=17.29 E-value=5.9e+02 Score=23.61 Aligned_cols=101 Identities=15% Similarity=0.182 Sum_probs=60.9
Q ss_pred EEEEEecCCCcccccccCceEEEEEeccCCCCCcccCCeeeeecCCCCHHHHHHHHhhcccccccc--cccccccCCCCC
Q 043662 140 VREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFS--AFVNVQRNDRLL 217 (330)
Q Consensus 140 V~~i~~v~~~FhaR~~a~~R~Y~Y~i~~~~~~~pf~~~~~~~~~~~lDi~~m~~a~~~f~G~HDF~--~F~~~~~~~~~~ 217 (330)
+..+-+.. .+-.......|+|.=.+..+. .++.+.++++++.|.|+..=. .|+..+ .+
T Consensus 90 ~v~~g~aT-k~~~~l~~~~K~Y~~~~~lg~---------------~~~~~~i~~~l~~f~G~i~Q~pP~~SA~k----~~ 149 (334)
T 2aus_C 90 PVALERAT-RVVQALLPAGKEYVALMHLHG---------------DVPEDKIRAVMKEFEGEIIQRPPLRSAVK----RR 149 (334)
T ss_dssp EEEEGGGG-GGGGGGTTCCEEEEEEEEESS---------------CCCHHHHHHHHHHTSEEEECC--------------
T ss_pred EEEeChhh-hhHHHhcccCcEEEEEEEECC---------------CCCHHHHHHHHHhCcCeEEEeCCccccCc----CC
Confidence 44444332 344455556889988775542 478899999999999986422 122221 12
Q ss_pred CCeEEEEEEEEEE-eCcEEEEEE--EeCcchhHHHHHHHHHHHHHhc
Q 043662 218 NPVKSVFRFDVIE-MGALLQLEV--EGSGFLYRQVRNMVALLLQIGK 261 (330)
Q Consensus 218 ~~~R~I~~~~v~~-~~~~v~~~I--~G~sFL~~qVR~MVG~ll~vg~ 261 (330)
...++|+++++.+ ....+.|+| ..--..+.-+| -+|..+.+|-
T Consensus 150 ~R~v~I~~~~~~~~~~~~~~~~v~cs~GTYIRsL~~-Dig~~Lg~~a 195 (334)
T 2aus_C 150 LRTRKVYYIEILEIDGRDVLFRVGVEAGTYIRSLIH-HIGLALGVGA 195 (334)
T ss_dssp --EEEEEEEEEEEEETTEEEEEEEECTTCCHHHHHH-HHHHHHSSCE
T ss_pred cCCEEEEEEEEEEeeCCeEEEEEEECCCcHHHHHHH-HHHHHhCCCE
Confidence 3457889998876 345555554 44457777777 6888877654
No 8
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=17.19 E-value=5.6e+02 Score=23.85 Aligned_cols=121 Identities=13% Similarity=0.128 Sum_probs=67.7
Q ss_pred eEEEEEEecCCCcccccccCceEEEEEeccCCCCCcccC--CeeeeecCCCCHHHHHHHHhhcccccccc--cccccccC
Q 043662 138 IRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQR--HYAYHSVYKLNTTLMRQAAEYFVGKHDFS--AFVNVQRN 213 (330)
Q Consensus 138 IrV~~i~~v~~~FhaR~~a~~R~Y~Y~i~~~~~~~pf~~--~~~~~~~~~lDi~~m~~a~~~f~G~HDF~--~F~~~~~~ 213 (330)
+-+..+-+... +-..+....|+|+=.+..+..-+-+.. .-.......++.+.++++++.|.|+..=. .|+..+-+
T Consensus 67 vL~i~~G~aTK-l~~~l~~~~K~Y~a~~~lG~~TdT~D~eG~v~~~~~~~~t~e~i~~~l~~f~G~i~Q~PP~~SAvKv~ 145 (327)
T 1k8w_A 67 MLPICLGEATK-FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 145 (327)
T ss_dssp EEEEEEGGGGG-GTHHHHTSCEEEEEEEEETEEESSSBTTSCEEEECCCCCCHHHHHHHHHTTSEEEEECCCSSSCCEET
T ss_pred EEEEEECHHHh-HHHHhccCCcEEEEEEEECCcccCCCCCCCEEeecCCCCCHHHHHHHHHhccceEEEeCChhheeccC
Confidence 44444444433 444444557888888766542221111 11111122478999999999999987633 33322110
Q ss_pred C-------------CCCCCeEEEEEEEEEE-eCcEEEEEE--EeCcchhHHHHHHHHHHHHHh
Q 043662 214 D-------------RLLNPVKSVFRFDVIE-MGALLQLEV--EGSGFLYRQVRNMVALLLQIG 260 (330)
Q Consensus 214 ~-------------~~~~~~R~I~~~~v~~-~~~~v~~~I--~G~sFL~~qVR~MVG~ll~vg 260 (330)
. ..+....+|+++++.. ....+.|+| ..--+++.-+| -+|..+.+|
T Consensus 146 GkraYelAR~G~~ve~~~R~v~I~~i~ll~~~~~~~~~~v~CskGTYIRsL~~-DiG~~Lg~~ 207 (327)
T 1k8w_A 146 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID-DLGEKLGCG 207 (327)
T ss_dssp TEEHHHHHHTTCCCCCCCEEEEEEEEEEEEEETTEEEEEEEECTTCCHHHHHH-HHHHHHTSC
T ss_pred CccHHHHHhCCCcccccceEEEEEEEEEEEeeCCEEEEEEEEcCCchHHHHHH-HHHHHhCCC
Confidence 0 1223456788888866 445555554 44457777777 577777654
No 9
>3rd4_A Uncharacterized protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, propen_03304, unknown function; 2.90A {Proteus penneri}
Probab=16.91 E-value=61 Score=25.35 Aligned_cols=16 Identities=13% Similarity=0.422 Sum_probs=14.6
Q ss_pred EEEEeCCCceeeeeCC
Q 043662 54 VIAYDGTRYAGWQFQT 69 (330)
Q Consensus 54 ~v~YdGt~y~G~Q~Q~ 69 (330)
.+.|.||+|-||..++
T Consensus 71 ~Lt~QGTRFi~F~~~~ 86 (100)
T 3rd4_A 71 RLFMQGSRFVQFETDV 86 (100)
T ss_dssp EEEEETTEEEEEEECC
T ss_pred EEEEeeeEEEEeecCC
Confidence 4889999999999987
No 10
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=13.71 E-value=7.3e+02 Score=23.32 Aligned_cols=100 Identities=9% Similarity=0.099 Sum_probs=60.0
Q ss_pred EEEEEecCCCcccccccCceEEEEEeccCCCCCcccCCeeeeecCCCCHHHHHHHHhhcccccccc--cccccccCCCCC
Q 043662 140 VREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFS--AFVNVQRNDRLL 217 (330)
Q Consensus 140 V~~i~~v~~~FhaR~~a~~R~Y~Y~i~~~~~~~pf~~~~~~~~~~~lDi~~m~~a~~~f~G~HDF~--~F~~~~~~~~~~ 217 (330)
+..+-+.. .+-..+....|+|.=.+..+. .++.+.++++++.|.|+..=. .|+..+ .+
T Consensus 110 ~v~~G~aT-k~~~~l~~~~K~Y~~~~~lG~---------------~~~~~~i~~~l~~f~G~i~Q~PP~~SAvK----~~ 169 (357)
T 2apo_A 110 PVALERAT-KTIPMWHIPPKEYVCLMHLHR---------------DASEEDILRVFKEFTGRIYQRPPLKAAVK----RR 169 (357)
T ss_dssp EEEEGGGG-GGGGGTTSSCEEEEEEEEESS---------------CCCHHHHHHHHHHHSEEEECC--------------
T ss_pred EEEeCHHH-hHHHHhccCCcEEEEEEEECC---------------CCCHHHHHHHHHhCcccEEEeCCchhhcc----cc
Confidence 44444433 344455567899988875542 477899999999999985321 232222 12
Q ss_pred CCeEEEEEEEEEE-eCcEEEEEE--EeCcchhHHHHHHHHHHHHHh
Q 043662 218 NPVKSVFRFDVIE-MGALLQLEV--EGSGFLYRQVRNMVALLLQIG 260 (330)
Q Consensus 218 ~~~R~I~~~~v~~-~~~~v~~~I--~G~sFL~~qVR~MVG~ll~vg 260 (330)
...++|+++++.+ ....+.|+| ..--..+.-+| -+|..+.+|
T Consensus 170 ~R~v~I~~~~l~~~~~~~~~~~v~cs~GTYIRsL~~-DiG~~LG~~ 214 (357)
T 2apo_A 170 LRIRKIHELELLDKDGKDVLFRVKCQSGTYIRKLCE-DIGEALGTS 214 (357)
T ss_dssp -CEEEEEEEEEEEEETTEEEEEEEECTTCCHHHHHH-HHHHHTTSC
T ss_pred ccceeEEEEEEEEeeCCEEEEEEEECCCchHHHHHH-HHHHhhCCC
Confidence 3457899999876 345665554 44456677777 577776543
Done!