RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 043662
(330 letters)
>1dj0_A Pseudouridine synthase I; alpha/beta fold, RNA-binding motif,
RNA-modifying enzyme, lyase; 1.50A {Escherichia coli}
SCOP: d.265.1.1 PDB: 2nqp_A 2nr0_A 2nre_A
Length = 264
Score = 317 bits (815), Expect = e-109
Identities = 90/270 (33%), Positives = 135/270 (50%), Gaps = 10/270 (3%)
Query: 47 PGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVH 106
P +K L I YDG++Y GWQ Q ++Q +EKAL +V E + + A RTD GVH
Sbjct: 2 PVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN---EPITVFCAGRTDAGVH 58
Query: 107 AWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIY 166
GQV HF T + +N LP DI VR + +FHARFSA ++ Y Y IY
Sbjct: 59 GTGQVVHFETTALRK-DAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIY 117
Query: 167 NDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRF 226
N + H L+ M +AA+ +G++DF++F VQ R P ++V
Sbjct: 118 NHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSR--TPWRNVMHI 175
Query: 227 DVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
+V G + ++++ + F++ VRN+V L+++G P + ++LA +DR A
Sbjct: 176 NVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAA--- 232
Query: 287 SAPPHGLCLVEVKYNEEHLRLPAACPLSSF 316
+A GL LV V Y + LP F
Sbjct: 233 TAKAEGLYLVAVDY-PDRYDLPKPPMGPLF 261
>1vs3_A TRNA pseudouridine synthase A; TRUA, tRNA modification, structural
NPPSFA, national project on protein structural and
function analyses; 2.25A {Thermus thermophilus}
Length = 249
Score = 306 bits (787), Expect = e-105
Identities = 86/256 (33%), Positives = 115/256 (44%), Gaps = 13/256 (5%)
Query: 51 WRLVIAYDGTRYAGWQFQTS-PPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 109
L+ YDGT +AG Q Q T+Q +E+AL + + V A RTD GVHA
Sbjct: 4 LLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGIG----ALPKAVAAGRTDAGVHALA 59
Query: 110 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 169
H + +E + ALN LLP D++V P+FHAR A + Y Y+I
Sbjct: 60 MPFHVDVESAIP-VEKVPEALNRLLPEDLKVVGAREVAPDFHARKDALWRAYRYRILVRP 118
Query: 170 VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRFDVI 229
P RH A L+ M +A +G+H+F F + R V
Sbjct: 119 HPSPLLRHRALWVRRPLDLEAMEEALSLLLGRHNFLGFAKEETRPG--ERELLEARLQVA 176
Query: 230 --EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYALS 287
E G ++L G FL QVR MV LL++G PP+ + IL T DR+ +
Sbjct: 177 EGEAGLEVRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPESLKAILKTADRRLAGP---T 233
Query: 288 APPHGLCLVEVKYNEE 303
AP HGL VE Y EE
Sbjct: 234 APAHGLYFVEAAYPEE 249
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 5e-05
Identities = 67/368 (18%), Positives = 107/368 (29%), Gaps = 132/368 (35%)
Query: 17 LLPSTNKQGVGVVGLEGTNNTVKPPTDDSFPGFKWRLVIAYDGTRYAGWQFQTSPPTIQC 76
LL + KQ V T D T
Sbjct: 269 LLTTRFKQ---VTDFLSAATTTHISLDHHSMTL-------------------TPDEVKS- 305
Query: 77 IVEKAL-IRVTKLEREDLR-------LVGASRTDTGVHAWGQVAHFITPFSYDGLES-IH 127
++ K L R L RE L ++ S D G+ W H + D L + I
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD-GLATWDNWKHV----NCDKLTTIIE 360
Query: 128 AALNGLLPPDIRVREISAAV-PEFHARFSAK--SKIYHYKIYNDA--VM----------- 171
++LN L P + R +V P A S I+ I +D V+
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPP-SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 172 DPFQRHYAYHSVY-KLNTTLMRQAA--------------------------EYF---VGK 201
P + + S+Y +L L + A +YF +G
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 202 HDFSAFVNVQRNDR-------LLNPVKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVA 254
H N++ +R L+ FRF L+ ++ + +++
Sbjct: 480 H----LKNIEHPERMTLFRMVFLD-----FRF--------LEQKIRHDSTAWNASGSILN 522
Query: 255 LLLQIGK------------EAIPPDI---VPKI---LATQDRKELAKYALSAPPHGLCLV 296
L Q+ E + I +PKI L +L + AL A +
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI--- 579
Query: 297 EVKYNEEH 304
+ E H
Sbjct: 580 ---FEEAH 584
Score = 37.1 bits (85), Expect = 0.008
Identities = 29/196 (14%), Positives = 59/196 (30%), Gaps = 45/196 (22%)
Query: 102 DTGVHAWGQVAHFITPFSYDGLESIHAALNGLL----PPDIRVREISAAVP-EFHARFSA 156
D + W + + +P E++ L LL P + S+ + H+ +
Sbjct: 181 DFKIF-WLNLKNCNSP------ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 157 KSKIYHYKIYNDA--VMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRND 214
++ K Y + V+ +V F + S + +
Sbjct: 234 LRRLLKSKPYENCLLVLL---------NVQNAKA------WNAF----NLSCKILLTTRF 274
Query: 215 RLLNPVKSVFRFDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPP---DIVP- 270
K V F + L+ +V++++ L + +P P
Sbjct: 275 ------KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 271 --KILATQDRKELAKY 284
I+A R LA +
Sbjct: 329 RLSIIAESIRDGLATW 344
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 6e-04
Identities = 61/408 (14%), Positives = 111/408 (27%), Gaps = 166/408 (40%)
Query: 66 QFQTS--PPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV-----AHFITPF 118
QF PT + +L + L V + + V + QV F +
Sbjct: 36 QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY 95
Query: 119 SYDGLES--IHAALNGLLPPD----IRVREI-----SAAV----PEFHARFSA------- 156
LE IHA LL + ++ +E+ +A + P SA
Sbjct: 96 ----LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 157 -KSKIYH------------------YKIYNDAVMDPFQRHYAY-----------HSVYK- 185
+++ Y+ Y+ V D + V+
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 186 -------LNTTLMRQAAEYF---------VGKHDFSAFVNVQRNDRLLNP--VKSVFR-- 225
L +Y +G + +V + P ++S +
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF-TPGELRSYLKGA 270
Query: 226 ----FDVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEA--------IPPDIV---- 269
++ + F + VR + +L IG +PP I+
Sbjct: 271 TGHSQGLV-TAVAIAETDSWESF-FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 270 --------PKILATQD--RKELAKYA-------------------------LSAPP---H 291
P +L+ + ++++ Y +S PP +
Sbjct: 329 ENNEGVPSP-MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY 387
Query: 292 GLCLV-------------EVKYNEEHLR-----LPAACPLSSFGRHHS 321
GL L + ++E L+ LP A P F HS
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP---F---HS 429
Score = 39.3 bits (91), Expect = 0.002
Identities = 56/331 (16%), Positives = 101/331 (30%), Gaps = 117/331 (35%)
Query: 9 PSPLYSNGLLPSTNKQGVGVVG-LEGTNNTVKPPTDD------SFPG-----FKWRLVIA 56
+++ QG+ ++ LE +NT P D S P +V A
Sbjct: 205 AEKVFT---------QGLNILEWLENPSNT--PDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 57 YDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGA---SRTDTGVHAWGQVAH 113
+ G+ +P ++ ++ A L V A + TD+ + V
Sbjct: 254 ----KLLGF----TPGELRSYLKGATGHSQGL-------VTAVAIAETDSWESFFVSVRK 298
Query: 114 FITPFSYDGLESIHAALNGLLPPDIR----------------VR-----EISAAVPEFHA 152
IT + G+ A N LPP I + ++ V + ++
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 153 RFSAKSKIYHYKI--YNDAVMDPFQRHY----AYHSVYKLNTTLMRQAAEYFVGKHD--- 203
A ++ I N A ++ S+Y LN TL + A D
Sbjct: 359 HLPAGKQVE---ISLVNGA------KNLVVSGPPQSLYGLNLTLRKAKAP---SGLDQSR 406
Query: 204 --FSAFVNVQRNDRLLNPVKSVF--RFDVI----------EMGALLQLEVEGSGFLYRQV 249
FS +R K F RF + L+ ++ + +
Sbjct: 407 IPFS-----ER--------KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 250 RNMVALL-------LQIGKEAIPPDIVPKIL 273
+ + L++ +I IV I+
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDCII 484
Score = 37.0 bits (85), Expect = 0.009
Identities = 46/292 (15%), Positives = 82/292 (28%), Gaps = 110/292 (37%)
Query: 41 PTDDSFPGFKWRLVIAYDGTRYA---GWQFQ------TSPPTIQCIVEKAL--------- 82
+ +SF V G + + PP+I +E +L
Sbjct: 287 DSWESF------FVSVRKAITVLFFIGVRCYEAYPNTSLPPSI---LEDSLENNEGVPSP 337
Query: 83 -IRVTKLEREDL-RLVGASRTDTGVHAWGQVA------HFI---TPFSYDG----LESIH 127
+ ++ L +E + V + + +++ + + P S G L
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 128 AALNGLLPPDIRVREI--SAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYAYHSVY- 184
A P + I S +F RF V PF HS
Sbjct: 398 A------PSGLDQSRIPFSERKLKFSNRF-------------LPVASPF------HSHLL 432
Query: 185 -----KLNTTLMRQAAEYFVGK------HDFSAFVNVQRNDRLLNP--VKSVFR------ 225
+N L++ F K +D +++ ++ V + R
Sbjct: 433 VPASDLINKDLVKNNVS-FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWE 491
Query: 226 ------------FD---VIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKE 262
F +G L +G+G VR +VA L I +
Sbjct: 492 TTTQFKATHILDFGPGGASGLGVLTHRNKDGTG-----VRVIVAGTLDINPD 538
Score = 31.6 bits (71), Expect = 0.42
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 12/48 (25%)
Query: 4 GVVGLPSPLYSNGLLPSTNKQGVGV-VGLEGTNNTVKPPTDDSFPGFK 50
G GL G+L NK G GV V + G T+ DD + GFK
Sbjct: 508 GASGL-------GVLTHRNKDGTGVRVIVAG---TLDINPDDDY-GFK 544
>2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase,
structural genom protein structure initiative, PSI,
nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A
3h70_A
Length = 342
Score = 32.8 bits (75), Expect = 0.13
Identities = 8/65 (12%), Positives = 20/65 (30%), Gaps = 6/65 (9%)
Query: 100 RTDTGVHAWGQVAHFITP-FSYDGLESIHAALNGLLPPDI-----RVREISAAVPEFHAR 153
D G +G+ F T + ++ + S+ + + V
Sbjct: 38 IDDKGNAYFGECNAFQTDWYDHETIASVKHVIEQWFEDNRNKSFETYEAALKLVDSLENT 97
Query: 154 FSAKS 158
+A++
Sbjct: 98 PAARA 102
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural
genomics, protein structure initiative; 1.42A {Listeria
monocytogenes str} PDB: 3bqt_A 3mab_A
Length = 93
Score = 29.0 bits (65), Expect = 0.53
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 10/72 (13%)
Query: 72 PTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFITPFSYDGLESIHAALN 131
P I ++E+ LI+ +L+ VG+ A+ ++ + L ++ A+
Sbjct: 10 PNIGKVLEQDLIKAGIKTPVELKDVGS------KEAFLRIWENDSSVCMSELYALEGAVQ 63
Query: 132 G----LLPPDIR 139
G L +
Sbjct: 64 GIRWHGLDEAKK 75
>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown
function, nysgxrc target T2186, superfamily, protein
structure initiative, PSI; 2.90A {Listeria innocua}
SCOP: c.1.11.2 d.54.1.1
Length = 393
Score = 30.4 bits (69), Expect = 0.88
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 100 RTDTGVHAWGQVAHFITPF-SYDGLESIHAALNGLLPPDI------RVREISAAVPEFHA 152
+ G+H +G++ F P + + L S + L P + + EI
Sbjct: 56 INEEGIHGYGELEAFPLPDYTEETLSSAILIIKEQLLPLLAQRKIRKPEEIQELFSWIQG 115
Query: 153 RFSAKS 158
AK+
Sbjct: 116 NEMAKA 121
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 1.5
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 12/74 (16%)
Query: 69 TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFITPFSYDGLESIHA 128
P + E L R ++ E + A++ G + + +
Sbjct: 1276 EEIP-SEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRI---------APLRG 1325
Query: 129 ALN--GLLPPDIRV 140
AL GL D+ V
Sbjct: 1326 ALATYGLTIDDLGV 1339
>1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus
radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A
2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A
Length = 375
Score = 29.6 bits (67), Expect = 1.5
Identities = 10/66 (15%), Positives = 18/66 (27%), Gaps = 7/66 (10%)
Query: 100 RTDTGVHAWGQVAHFITPF-SYDGLESIHAALNGLLPPDI------RVREISAAVPEFHA 152
GV + P + + L G P I +S A+ +
Sbjct: 43 LHGEGVQGVAEGTMEARPMYREETIAGALDLLRGTFLPAILGQTFANPEAVSDALGSYRG 102
Query: 153 RFSAKS 158
A++
Sbjct: 103 NRMARA 108
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 29.5 bits (67), Expect = 1.8
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 120 YDGLESIHAALNGLLPPDIRVREISAA 146
Y +E + L+ LP + I A
Sbjct: 424 YRLIEDLQEELSSRLPCIVEEHPIGEA 450
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.4
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 9/33 (27%)
Query: 23 KQGVGVVGLEGTNNTVKPPTDDSFPGFKWRLVI 55
KQ + L+ ++K DDS P L I
Sbjct: 19 KQALK--KLQ---ASLKLYADDSAPA----LAI 42
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 28.6 bits (65), Expect = 2.8
Identities = 8/32 (25%), Positives = 20/32 (62%), Gaps = 8/32 (25%)
Query: 120 YDGLESIHAALNGLLPPDIR--------VREI 143
Y+ ++ + AA++G+L P+++ VR++
Sbjct: 385 YNLIDEVKAAMSGMLSPELKQQIIGLAEVRDV 416
>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II,
NYSGXRC, enolase, structural genomics, protei structure
initiative, PSI-2; 1.93A {Azoarcus SP}
Length = 397
Score = 28.1 bits (63), Expect = 4.8
Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 8/69 (11%)
Query: 100 RTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRV----REISAAVPEFHARF- 154
+D G+ + + + +SI + + P + + +I V
Sbjct: 39 HSDEGLVGIADAGDTSSWYRGETQDSITSMICDFFAPKVLLGEDPTKIEKIVGRMDILTR 98
Query: 155 ---SAKSKI 160
AK+ +
Sbjct: 99 DNNQAKATV 107
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan
biosynthesis, riken structural genomics/PR initiative,
RSGI, structural genomics; 1.80A {Thermus thermophilus}
SCOP: c.1.2.4
Length = 254
Score = 27.5 bits (62), Expect = 5.8
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 261 KEAIPPDIVPKILATQDRKELAKYALSAPP 290
+ P ++ +I + E+A Y L PP
Sbjct: 4 DLSRVPGVLGEIARKR-ASEVAPYPLPEPP 32
>2pmq_A Mandelate racemase/muconate lactonizing enzyme; structural
genomics, isomerase, PSI-2; HET: MSE; 1.72A {Roseovarius
SP}
Length = 377
Score = 27.6 bits (62), Expect = 6.8
Identities = 10/64 (15%), Positives = 17/64 (26%), Gaps = 5/64 (7%)
Query: 100 RTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPP----DIRVREISAAVPEFHARF- 154
+ G WG+ ++ AAL L + + +
Sbjct: 40 IAEDGTIGWGETCPVGPTYAEAHAGGALAALEVLASGLAGAEALPLPLHTRMDSLLCGHN 99
Query: 155 SAKS 158
AKS
Sbjct: 100 YAKS 103
>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase,
oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism,
glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB:
2bhl_A* 1qki_A*
Length = 489
Score = 27.5 bits (62), Expect = 7.8
Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 10/62 (16%)
Query: 127 HAALNGLLPPDIRV-----REISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQRHYAYH 181
+GLLP + + ++ A + + K ++ F +Y
Sbjct: 28 WLFRDGLLPENTFIVGYARSRLTVA--DIRKQSEPFFKA---TPEEKLKLEDFFARNSYV 82
Query: 182 SV 183
+
Sbjct: 83 AG 84
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme
E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 26.5 bits (59), Expect = 8.7
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 12/51 (23%)
Query: 37 TVKPPTDDSFPGFKWRLVIAYDGTRYAGWQFQTS----------PPTIQCI 77
+ D ++LVI D Y +F S PP ++C
Sbjct: 25 DISFSDPDDL--LNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCE 73
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.421
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,251,700
Number of extensions: 320133
Number of successful extensions: 631
Number of sequences better than 10.0: 1
Number of HSP's gapped: 614
Number of HSP's successfully gapped: 30
Length of query: 330
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 236
Effective length of database: 4,077,219
Effective search space: 962223684
Effective search space used: 962223684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)