RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 043662
         (330 letters)



>d1dj0a_ d.265.1.1 (A:) Pseudouridine synthase I TruA {Escherichia
           coli [TaxId: 562]}
          Length = 264

 Score =  155 bits (393), Expect = 3e-46
 Identities = 90/268 (33%), Positives = 138/268 (51%), Gaps = 10/268 (3%)

Query: 47  PGFKWRLVIAYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVH 106
           P +K  L I YDG++Y GWQ Q    ++Q  +EKAL   +++  E + +  A RTD GVH
Sbjct: 2   PVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKAL---SQVANEPITVFCAGRTDAGVH 58

Query: 107 AWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIY 166
             GQV HF T        +    +N  LP DI VR +     +FHARFSA ++ Y Y IY
Sbjct: 59  GTGQVVHFETTALRKD-AAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIY 117

Query: 167 NDAVMDPFQRHYAYHSVYKLNTTLMRQAAEYFVGKHDFSAFVNVQRNDRLLNPVKSVFRF 226
           N  +          H    L+   M +AA+  +G++DF++F  VQ   R   P ++V   
Sbjct: 118 NHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSR--TPWRNVMHI 175

Query: 227 DVIEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATQDRKELAKYAL 286
           +V   G  + ++++ + F++  VRN+V  L+++G    P   + ++LA +DR   A    
Sbjct: 176 NVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAA--- 232

Query: 287 SAPPHGLCLVEVKYNEEH-LRLPAACPL 313
           +A   GL LV V Y + + L  P   PL
Sbjct: 233 TAKAEGLYLVAVDYPDRYDLPKPPMGPL 260


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0695    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,260,611
Number of extensions: 58663
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 5
Length of query: 330
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 244
Effective length of database: 1,226,816
Effective search space: 299343104
Effective search space used: 299343104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)