Query 043665
Match_columns 132
No_of_seqs 161 out of 1042
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 07:10:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043665.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043665hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00891 Methyltransf_2: O-met 100.0 1.4E-30 3E-35 193.8 6.8 107 2-109 115-241 (241)
2 KOG3178 Hydroxyindole-O-methyl 99.9 3.2E-27 6.9E-32 181.9 9.5 130 2-132 192-342 (342)
3 TIGR02716 C20_methyl_CrtF C-20 99.8 9.7E-19 2.1E-23 134.4 11.6 116 2-119 164-305 (306)
4 TIGR00740 methyltransferase, p 99.2 5.5E-11 1.2E-15 88.3 6.4 118 2-120 68-227 (239)
5 PTZ00098 phosphoethanolamine N 99.0 1.8E-08 3.9E-13 76.2 13.0 117 3-122 68-204 (263)
6 PF05891 Methyltransf_PK: AdoM 98.9 7.8E-10 1.7E-14 81.3 3.4 97 20-121 88-202 (218)
7 PLN02490 MPBQ/MSBQ methyltrans 98.9 3E-08 6.4E-13 77.7 11.9 113 2-123 128-259 (340)
8 PRK15451 tRNA cmo(5)U34 methyl 98.9 2.5E-08 5.3E-13 74.7 10.5 115 3-118 72-228 (247)
9 TIGR01934 MenG_MenH_UbiE ubiqu 98.9 5.3E-08 1.2E-12 70.7 11.8 128 2-132 54-223 (223)
10 PLN02233 ubiquinone biosynthes 98.9 1.1E-07 2.4E-12 71.9 13.2 126 3-131 89-260 (261)
11 TIGR02752 MenG_heptapren 2-hep 98.9 7.4E-08 1.6E-12 70.9 12.0 128 2-132 60-231 (231)
12 PRK00216 ubiE ubiquinone/menaq 98.8 1.7E-07 3.7E-12 68.7 13.1 128 2-132 66-238 (239)
13 smart00828 PKS_MT Methyltransf 98.8 1.6E-07 3.5E-12 68.8 11.3 115 2-122 14-146 (224)
14 PF01209 Ubie_methyltran: ubiE 98.7 1.2E-08 2.6E-13 76.1 4.7 128 2-132 62-233 (233)
15 PRK11873 arsM arsenite S-adeno 98.7 5.1E-07 1.1E-11 68.2 12.0 109 9-120 100-230 (272)
16 PRK14103 trans-aconitate 2-met 98.7 5E-07 1.1E-11 67.7 11.2 112 2-117 44-181 (255)
17 PLN02336 phosphoethanolamine N 98.6 6E-07 1.3E-11 72.9 12.1 114 3-121 282-415 (475)
18 PLN02244 tocopherol O-methyltr 98.6 1E-06 2.2E-11 69.0 11.7 117 2-122 133-280 (340)
19 COG2226 UbiE Methylase involve 98.5 1.7E-06 3.7E-11 64.8 11.0 126 2-130 66-235 (238)
20 PRK15068 tRNA mo(5)U34 methylt 98.5 2.8E-06 6.1E-11 66.2 11.7 116 2-121 137-275 (322)
21 PF12847 Methyltransf_18: Meth 98.5 4.4E-07 9.5E-12 59.2 5.9 75 2-77 16-105 (112)
22 PF08242 Methyltransf_12: Meth 98.5 9.5E-08 2.1E-12 61.4 2.7 73 2-77 11-97 (99)
23 PRK08317 hypothetical protein; 98.4 4.8E-06 1E-10 60.7 11.3 115 2-119 34-175 (241)
24 PRK11036 putative S-adenosyl-L 98.4 1.9E-06 4.2E-11 64.6 8.8 116 3-123 60-210 (255)
25 PLN02232 ubiquinone biosynthes 98.4 1.5E-06 3.3E-11 61.1 7.1 111 16-129 2-157 (160)
26 PF13489 Methyltransf_23: Meth 98.4 1.1E-06 2.4E-11 60.4 5.8 98 13-117 46-160 (161)
27 PRK07580 Mg-protoporphyrin IX 98.3 7.9E-06 1.7E-10 59.8 10.3 118 3-123 79-217 (230)
28 smart00138 MeTrc Methyltransfe 98.3 2.2E-06 4.7E-11 65.0 7.4 75 2-77 118-236 (264)
29 PLN03075 nicotianamine synthas 98.3 2.9E-06 6.3E-11 65.4 7.3 70 6-77 144-227 (296)
30 TIGR00452 methyltransferase, p 98.3 1.5E-05 3.3E-10 61.9 11.0 113 3-121 137-274 (314)
31 PLN02396 hexaprenyldihydroxybe 98.3 1.3E-05 2.9E-10 62.5 10.6 107 10-119 152-288 (322)
32 PLN02585 magnesium protoporphy 98.3 9.9E-06 2.1E-10 63.0 9.5 126 3-132 160-314 (315)
33 PRK06202 hypothetical protein; 98.2 1.4E-05 3E-10 59.1 9.5 112 8-122 85-224 (232)
34 PRK11207 tellurite resistance 98.2 2.4E-05 5.2E-10 56.7 9.9 108 3-118 46-168 (197)
35 TIGR02072 BioC biotin biosynth 98.2 2.3E-05 4.9E-10 57.2 9.8 113 2-118 49-174 (240)
36 TIGR02021 BchM-ChlM magnesium 98.1 6.3E-05 1.4E-09 55.0 11.1 117 3-122 71-208 (219)
37 PF06080 DUF938: Protein of un 98.1 8.2E-05 1.8E-09 54.5 11.1 129 2-131 40-203 (204)
38 PF13649 Methyltransf_25: Meth 98.1 7.2E-06 1.6E-10 52.9 5.0 74 3-77 13-101 (101)
39 TIGR03438 probable methyltrans 98.1 0.0001 2.2E-09 56.9 11.9 75 2-77 78-171 (301)
40 PF08241 Methyltransf_11: Meth 98.1 1.3E-05 2.7E-10 50.1 5.8 70 4-77 13-91 (95)
41 PRK01683 trans-aconitate 2-met 98.1 7.7E-05 1.7E-09 55.8 11.0 111 2-115 46-182 (258)
42 KOG1540 Ubiquinone biosynthesi 98.1 4E-05 8.6E-10 58.0 9.2 112 3-117 116-278 (296)
43 PF02353 CMAS: Mycolic acid cy 98.0 4.2E-05 9.1E-10 58.4 9.1 119 2-122 77-219 (273)
44 PF12147 Methyltransf_20: Puta 98.0 0.00022 4.7E-09 54.9 12.4 127 4-131 152-310 (311)
45 PF13847 Methyltransf_31: Meth 98.0 8.6E-06 1.9E-10 56.3 4.1 106 2-112 18-152 (152)
46 PRK06922 hypothetical protein; 98.0 2.8E-05 6E-10 65.6 7.5 75 2-77 433-531 (677)
47 TIGR00537 hemK_rel_arch HemK-r 97.9 0.00024 5.2E-09 50.4 10.6 115 2-131 34-176 (179)
48 PLN02336 phosphoethanolamine N 97.9 9.5E-05 2.1E-09 60.1 9.4 111 3-117 53-179 (475)
49 PF05401 NodS: Nodulation prot 97.9 2.1E-05 4.5E-10 57.3 4.6 101 13-121 67-181 (201)
50 PRK08287 cobalt-precorrin-6Y C 97.8 0.00016 3.5E-09 51.7 8.4 99 2-118 46-154 (187)
51 PF11968 DUF3321: Putative met 97.8 0.00038 8.2E-09 51.4 9.5 108 9-123 70-184 (219)
52 PRK11705 cyclopropane fatty ac 97.7 0.00048 1E-08 54.9 10.7 117 3-122 183-314 (383)
53 COG2230 Cfa Cyclopropane fatty 97.7 0.00036 7.8E-09 53.5 9.4 120 1-122 86-225 (283)
54 TIGR03534 RF_mod_PrmC protein- 97.7 0.00074 1.6E-08 49.9 10.1 106 2-121 102-242 (251)
55 TIGR01983 UbiG ubiquinone bios 97.6 0.00076 1.7E-08 49.1 9.9 111 4-119 62-202 (224)
56 PF01739 CheR: CheR methyltran 97.6 9.9E-05 2.1E-09 53.8 4.9 66 11-77 64-169 (196)
57 PRK10611 chemotaxis methyltran 97.6 0.00022 4.7E-09 54.9 6.6 75 2-77 134-256 (287)
58 COG4106 Tam Trans-aconitate me 97.6 0.00032 6.9E-09 52.1 6.7 127 3-132 46-203 (257)
59 COG1352 CheR Methylase of chem 97.5 0.00036 7.9E-09 53.2 7.1 76 1-77 114-235 (268)
60 PRK12335 tellurite resistance 97.5 0.0016 3.5E-08 49.8 10.3 101 11-119 142-258 (287)
61 TIGR03587 Pse_Me-ase pseudamin 97.5 0.00063 1.4E-08 49.7 7.7 71 2-73 58-134 (204)
62 PRK15001 SAM-dependent 23S rib 97.5 0.00067 1.4E-08 54.1 8.3 75 2-77 243-334 (378)
63 TIGR02081 metW methionine bios 97.5 0.0026 5.5E-08 45.7 10.5 109 9-121 34-168 (194)
64 TIGR00477 tehB tellurite resis 97.5 0.00062 1.3E-08 49.2 7.1 101 11-119 52-168 (195)
65 PRK05134 bifunctional 3-demeth 97.4 0.0024 5.2E-08 46.9 10.1 107 11-120 70-205 (233)
66 PRK05785 hypothetical protein; 97.4 0.004 8.8E-08 46.1 11.2 125 2-132 66-224 (226)
67 PRK04457 spermidine synthase; 97.4 0.00051 1.1E-08 52.1 6.2 74 2-77 81-171 (262)
68 PRK09328 N5-glutamine S-adenos 97.3 0.0087 1.9E-07 44.9 11.9 115 2-130 123-273 (275)
69 COG2227 UbiG 2-polyprenyl-3-me 97.2 0.0019 4E-08 48.5 6.9 115 2-121 74-216 (243)
70 PRK11805 N5-glutamine S-adenos 97.2 0.0095 2.1E-07 46.2 11.0 105 2-121 148-287 (307)
71 PF04672 Methyltransf_19: S-ad 97.1 0.00096 2.1E-08 50.8 5.3 109 6-117 90-233 (267)
72 KOG2361 Predicted methyltransf 97.1 0.0017 3.7E-08 48.8 6.5 113 5-118 89-235 (264)
73 PRK10258 biotin biosynthesis p 97.1 0.0066 1.4E-07 45.2 9.7 103 10-115 63-182 (251)
74 PRK09489 rsmC 16S ribosomal RN 97.1 0.0028 6.1E-08 49.9 8.0 75 2-77 211-297 (342)
75 TIGR03533 L3_gln_methyl protei 97.0 0.014 3.1E-07 44.7 10.9 106 2-122 136-276 (284)
76 TIGR02469 CbiT precorrin-6Y C5 97.0 0.0025 5.5E-08 41.6 6.0 70 2-77 34-116 (124)
77 PRK04266 fibrillarin; Provisio 97.0 0.028 6E-07 41.8 12.1 119 2-131 87-224 (226)
78 PF05175 MTS: Methyltransferas 96.8 0.0047 1E-07 43.6 6.0 75 2-77 46-134 (170)
79 TIGR03840 TMPT_Se_Te thiopurin 96.7 0.013 2.7E-07 43.2 8.1 103 11-118 56-185 (213)
80 PRK14968 putative methyltransf 96.7 0.056 1.2E-06 37.9 11.2 114 3-131 39-187 (188)
81 TIGR00138 gidB 16S rRNA methyl 96.7 0.0081 1.7E-07 43.1 6.5 107 2-128 57-178 (181)
82 PRK01544 bifunctional N5-gluta 96.6 0.049 1.1E-06 45.1 11.5 115 2-130 153-304 (506)
83 KOG2899 Predicted methyltransf 96.6 0.035 7.5E-07 42.1 9.5 113 1-114 72-249 (288)
84 PF08003 Methyltransf_9: Prote 96.5 0.011 2.4E-07 46.0 6.6 88 31-121 166-268 (315)
85 cd02440 AdoMet_MTases S-adenos 96.5 0.021 4.6E-07 34.9 6.9 71 4-77 15-98 (107)
86 COG2813 RsmC 16S RNA G1207 met 96.2 0.12 2.5E-06 40.2 10.7 76 2-78 173-261 (300)
87 PRK13255 thiopurine S-methyltr 96.1 0.047 1E-06 40.3 8.0 105 10-119 58-189 (218)
88 KOG1270 Methyltransferases [Co 96.1 0.019 4.1E-07 43.8 5.8 105 12-119 112-248 (282)
89 TIGR00536 hemK_fam HemK family 96.0 0.049 1.1E-06 41.6 8.1 113 2-128 129-278 (284)
90 PF05724 TPMT: Thiopurine S-me 95.8 0.066 1.4E-06 39.6 7.7 105 11-120 59-190 (218)
91 PRK01581 speE spermidine synth 95.8 0.032 6.9E-07 44.5 6.3 114 2-130 165-311 (374)
92 PRK00107 gidB 16S rRNA methylt 95.8 0.045 9.8E-07 39.5 6.7 110 2-131 60-185 (187)
93 PHA03411 putative methyltransf 95.8 0.08 1.7E-06 40.7 8.2 108 3-116 80-210 (279)
94 PRK00517 prmA ribosomal protei 95.7 0.25 5.4E-06 37.0 10.7 102 9-128 140-246 (250)
95 PTZ00146 fibrillarin; Provisio 95.7 0.38 8.3E-06 37.3 11.6 117 4-130 149-284 (293)
96 PRK00121 trmB tRNA (guanine-N( 95.5 0.037 8E-07 40.2 5.4 75 2-77 55-150 (202)
97 PLN02366 spermidine synthase 95.5 0.073 1.6E-06 41.4 7.2 74 2-77 106-200 (308)
98 PRK00811 spermidine synthase; 95.5 0.067 1.5E-06 40.9 6.9 75 2-77 91-185 (283)
99 COG0421 SpeE Spermidine syntha 95.4 0.041 8.8E-07 42.4 5.5 70 2-77 91-184 (282)
100 PRK00536 speE spermidine synth 95.2 0.054 1.2E-06 41.3 5.6 66 2-77 87-165 (262)
101 TIGR03439 methyl_EasF probable 95.2 0.34 7.4E-06 37.9 10.1 75 2-77 95-191 (319)
102 PRK13256 thiopurine S-methyltr 95.1 0.12 2.7E-06 38.5 7.1 102 11-118 65-195 (226)
103 PF03848 TehB: Tellurite resis 94.9 0.054 1.2E-06 39.4 4.6 98 11-118 52-167 (192)
104 TIGR00417 speE spermidine synt 94.9 0.097 2.1E-06 39.7 6.2 74 3-77 88-180 (270)
105 PRK14966 unknown domain/N5-glu 94.9 0.94 2E-05 36.9 12.0 49 2-50 266-326 (423)
106 TIGR00091 tRNA (guanine-N(7)-) 94.7 0.026 5.6E-07 40.6 2.6 74 2-77 31-126 (194)
107 PF13659 Methyltransf_26: Meth 94.7 0.083 1.8E-06 34.2 4.8 74 2-77 15-109 (117)
108 COG4123 Predicted O-methyltran 94.4 0.55 1.2E-05 35.6 9.1 117 2-132 59-212 (248)
109 PRK07402 precorrin-6B methylas 94.3 0.2 4.4E-06 35.9 6.4 69 2-77 55-136 (196)
110 PRK14121 tRNA (guanine-N(7)-)- 94.3 0.25 5.4E-06 39.8 7.4 116 2-119 137-285 (390)
111 COG2242 CobL Precorrin-6B meth 94.2 0.32 7E-06 35.3 7.2 69 2-77 49-129 (187)
112 PRK03612 spermidine synthase; 94.2 0.2 4.3E-06 41.7 6.9 98 2-113 312-437 (521)
113 PF03059 NAS: Nicotianamine sy 93.9 0.18 3.9E-06 38.8 5.6 74 2-77 136-224 (276)
114 PRK00377 cbiT cobalt-precorrin 93.7 0.4 8.6E-06 34.5 7.0 95 3-115 56-165 (198)
115 PF05219 DREV: DREV methyltran 93.5 0.25 5.4E-06 37.7 5.7 77 43-122 151-242 (265)
116 KOG4300 Predicted methyltransf 93.3 0.72 1.6E-05 34.4 7.7 117 10-130 98-244 (252)
117 PF01564 Spermine_synth: Sperm 93.1 0.1 2.2E-06 39.3 3.2 75 2-77 91-185 (246)
118 PLN02823 spermine synthase 92.7 0.41 8.9E-06 37.7 6.1 75 2-77 118-214 (336)
119 TIGR00406 prmA ribosomal prote 92.6 2.3 5E-05 32.5 10.1 96 8-122 179-285 (288)
120 KOG1975 mRNA cap methyltransfe 92.2 0.14 3.1E-06 40.3 3.0 35 42-77 195-231 (389)
121 COG4627 Uncharacterized protei 92.1 0.09 1.9E-06 37.3 1.6 34 43-77 47-80 (185)
122 PF01861 DUF43: Protein of unk 92.0 3.1 6.7E-05 31.4 9.7 106 2-121 58-179 (243)
123 PRK14967 putative methyltransf 91.7 4 8.7E-05 29.8 10.5 72 4-77 53-153 (223)
124 COG4301 Uncharacterized conser 91.6 0.94 2E-05 34.7 6.7 67 10-77 105-187 (321)
125 PRK13944 protein-L-isoaspartat 91.6 1.1 2.3E-05 32.5 6.9 65 4-77 89-167 (205)
126 PF06859 Bin3: Bicoid-interact 91.5 0.04 8.8E-07 36.6 -0.6 77 44-121 2-93 (110)
127 COG2890 HemK Methylase of poly 91.3 0.54 1.2E-05 36.0 5.2 50 1-50 124-183 (280)
128 PF02153 PDH: Prephenate dehyd 91.2 0.98 2.1E-05 34.0 6.5 104 2-123 2-107 (258)
129 TIGR03704 PrmC_rel_meth putati 91.0 1.6 3.5E-05 32.7 7.6 104 2-119 101-239 (251)
130 PF01234 NNMT_PNMT_TEMT: NNMT/ 91.0 0.26 5.6E-06 37.5 3.2 77 41-120 155-239 (256)
131 PF07942 N2227: N2227-like pro 90.9 1.2 2.6E-05 34.1 6.8 88 29-120 143-242 (270)
132 PRK11088 rrmA 23S rRNA methylt 90.7 0.67 1.5E-05 35.0 5.3 66 2-77 100-175 (272)
133 PLN02672 methionine S-methyltr 90.5 2.9 6.3E-05 38.0 9.7 49 2-50 133-210 (1082)
134 PRK13942 protein-L-isoaspartat 90.3 1.6 3.4E-05 31.9 6.8 59 10-77 100-170 (212)
135 TIGR00027 mthyl_TIGR00027 meth 90.2 3.2 6.9E-05 31.4 8.5 107 11-118 104-248 (260)
136 TIGR00080 pimt protein-L-isoas 89.4 1.9 4.1E-05 31.3 6.6 66 3-77 93-171 (215)
137 PLN02781 Probable caffeoyl-CoA 89.0 2 4.3E-05 31.9 6.6 69 3-77 84-172 (234)
138 COG4262 Predicted spermidine s 89.0 1.5 3.3E-05 35.4 6.1 68 4-77 305-401 (508)
139 TIGR01177 conserved hypothetic 88.6 4 8.7E-05 31.7 8.3 96 9-121 202-316 (329)
140 PF07109 Mg-por_mtran_C: Magne 88.5 1.1 2.4E-05 29.1 4.3 79 52-132 4-97 (97)
141 COG3315 O-Methyltransferase in 88.2 1.8 3.9E-05 33.5 6.0 107 11-118 115-262 (297)
142 PRK14902 16S rRNA methyltransf 86.0 6 0.00013 32.1 8.2 74 3-77 266-373 (444)
143 KOG1271 Methyltransferases [Ge 84.2 6 0.00013 29.1 6.5 106 3-122 83-207 (227)
144 PF01596 Methyltransf_3: O-met 83.9 1 2.2E-05 33.0 2.6 70 2-77 60-149 (205)
145 PLN02589 caffeoyl-CoA O-methyl 83.7 6 0.00013 29.8 6.7 69 3-77 95-184 (247)
146 PLN02476 O-methyltransferase 82.0 21 0.00046 27.5 10.9 118 3-129 134-276 (278)
147 TIGR00446 nop2p NOL1/NOP2/sun 82.0 12 0.00027 28.1 7.9 73 4-77 88-193 (264)
148 PRK00312 pcm protein-L-isoaspa 80.6 9.6 0.00021 27.4 6.7 56 13-77 102-169 (212)
149 PF10017 Methyltransf_33: Hist 80.4 3.7 8.1E-05 27.6 4.2 29 95-123 92-120 (127)
150 PF07021 MetW: Methionine bios 80.2 20 0.00044 26.1 9.2 113 4-123 29-170 (193)
151 PF10294 Methyltransf_16: Puta 79.5 8.1 0.00018 27.2 5.9 71 4-77 62-150 (173)
152 PRK14904 16S rRNA methyltransf 79.3 15 0.00033 29.8 8.1 72 5-77 268-371 (445)
153 COG4122 Predicted O-methyltran 79.2 11 0.00023 28.1 6.6 69 3-77 75-160 (219)
154 KOG1331 Predicted methyltransf 79.1 3.5 7.6E-05 31.9 4.1 68 9-77 63-137 (293)
155 PF03291 Pox_MCEL: mRNA cappin 78.2 1.1 2.5E-05 35.2 1.2 34 43-77 145-180 (331)
156 PF06325 PrmA: Ribosomal prote 78.0 13 0.00029 28.8 7.0 99 8-127 181-290 (295)
157 PF11899 DUF3419: Protein of u 77.6 4.4 9.6E-05 32.6 4.4 48 29-77 274-328 (380)
158 PRK11188 rrmJ 23S rRNA methylt 77.5 16 0.00036 26.5 7.1 68 5-77 69-159 (209)
159 TIGR00563 rsmB ribosomal RNA s 77.3 15 0.00032 29.7 7.5 74 3-77 254-362 (426)
160 COG2264 PrmA Ribosomal protein 77.3 33 0.0007 26.8 9.1 100 8-126 182-294 (300)
161 TIGR00438 rrmJ cell division p 77.2 8.1 0.00018 27.3 5.4 70 3-77 48-140 (188)
162 KOG2798 Putative trehalase [Ca 77.0 8.6 0.00019 30.5 5.7 74 44-120 260-337 (369)
163 COG4976 Predicted methyltransf 76.4 1.5 3.3E-05 33.2 1.4 104 14-121 150-266 (287)
164 PRK14903 16S rRNA methyltransf 76.3 19 0.00041 29.3 7.8 73 4-77 254-360 (431)
165 PRK11727 23S rRNA mA1618 methy 76.0 30 0.00065 27.2 8.6 117 4-121 131-293 (321)
166 PRK10901 16S rRNA methyltransf 74.7 27 0.00058 28.3 8.3 75 2-77 259-366 (427)
167 COG2519 GCD14 tRNA(1-methylade 74.3 20 0.00044 27.3 6.9 68 2-77 109-189 (256)
168 PF04816 DUF633: Family of unk 71.8 36 0.00079 24.8 8.6 111 2-131 12-138 (205)
169 KOG1500 Protein arginine N-met 70.9 13 0.00028 30.0 5.4 63 14-77 203-276 (517)
170 PF05148 Methyltransf_8: Hypot 70.3 9.1 0.0002 28.5 4.2 77 40-132 117-197 (219)
171 COG4798 Predicted methyltransf 70.2 17 0.00037 27.0 5.5 72 44-121 123-206 (238)
172 PRK14901 16S rRNA methyltransf 70.0 36 0.00077 27.6 8.0 74 3-77 268-378 (434)
173 KOG3045 Predicted RNA methylas 69.3 43 0.00093 26.1 7.7 87 30-132 212-303 (325)
174 PF01795 Methyltransf_5: MraW 68.4 13 0.00027 29.2 4.9 35 2-36 35-75 (310)
175 PF08845 SymE_toxin: Toxin Sym 66.5 4.4 9.6E-05 23.6 1.6 11 106-116 31-41 (57)
176 PRK13943 protein-L-isoaspartat 66.0 21 0.00044 28.0 5.7 66 3-77 96-174 (322)
177 PHA03412 putative methyltransf 62.2 47 0.001 25.1 6.8 110 3-115 65-197 (241)
178 PF08002 DUF1697: Protein of u 61.5 14 0.00031 25.2 3.6 30 94-123 13-43 (137)
179 COG0275 Predicted S-adenosylme 59.6 16 0.00034 28.7 3.9 37 2-38 38-82 (314)
180 PF09243 Rsm22: Mitochondrial 58.4 30 0.00064 26.3 5.2 34 40-74 99-132 (274)
181 PF04072 LCM: Leucine carboxyl 57.5 22 0.00048 25.1 4.2 66 4-70 95-183 (183)
182 TIGR00006 S-adenosyl-methyltra 56.9 32 0.00069 26.9 5.2 35 2-36 35-75 (305)
183 COG4004 Uncharacterized protei 56.1 43 0.00094 21.5 4.8 39 94-132 7-49 (96)
184 PF12419 DUF3670: SNF2 Helicas 56.0 17 0.00038 24.8 3.3 56 56-112 11-97 (141)
185 PF07927 YcfA: YcfA-like prote 55.3 15 0.00032 20.6 2.5 17 102-118 2-18 (56)
186 PRK13168 rumA 23S rRNA m(5)U19 53.8 1.1E+02 0.0024 24.9 8.1 96 3-122 313-426 (443)
187 PRK11783 rlmL 23S rRNA m(2)G24 53.5 1.5E+02 0.0033 25.8 9.3 96 11-120 561-680 (702)
188 PF09445 Methyltransf_15: RNA 52.6 14 0.00031 26.1 2.5 47 2-50 14-76 (163)
189 PF05430 Methyltransf_30: S-ad 52.5 39 0.00085 22.7 4.5 68 43-131 50-122 (124)
190 cd01842 SGNH_hydrolase_like_5 50.5 22 0.00048 25.7 3.2 33 44-77 51-93 (183)
191 TIGR00755 ksgA dimethyladenosi 49.3 43 0.00094 24.8 4.8 62 2-65 44-115 (253)
192 cd04411 Ribosomal_P1_P2_L12p R 48.9 19 0.0004 23.6 2.4 28 90-117 8-35 (105)
193 PRK06402 rpl12p 50S ribosomal 48.8 19 0.00041 23.7 2.4 29 90-118 8-36 (106)
194 PRK00050 16S rRNA m(4)C1402 me 48.0 34 0.00075 26.5 4.2 35 2-36 34-74 (296)
195 COG2521 Predicted archaeal met 47.9 50 0.0011 25.3 4.8 90 13-120 159-277 (287)
196 KOG3987 Uncharacterized conser 47.9 12 0.00026 28.1 1.6 76 43-121 169-261 (288)
197 PF08123 DOT1: Histone methyla 47.1 58 0.0013 23.8 5.1 61 13-77 68-152 (205)
198 COG4822 CbiK Cobalamin biosynt 46.9 27 0.00059 26.3 3.2 22 99-120 216-237 (265)
199 smart00874 B5 tRNA synthetase 46.8 30 0.00065 20.3 3.0 22 95-116 15-36 (71)
200 TIGR03685 L21P_arch 50S riboso 45.1 23 0.00049 23.3 2.4 27 90-116 8-34 (105)
201 cd05832 Ribosomal_L12p Ribosom 44.5 23 0.0005 23.3 2.4 27 90-116 8-34 (106)
202 cd01093 CRIB_PAK_like PAK (p21 44.5 14 0.00029 20.4 1.1 22 96-117 23-44 (46)
203 KOG2940 Predicted methyltransf 44.2 60 0.0013 24.9 4.7 73 43-118 137-225 (325)
204 PRK14896 ksgA 16S ribosomal RN 44.2 1.1E+02 0.0024 22.8 6.3 61 2-65 44-112 (258)
205 PF03141 Methyltransf_29: Puta 43.0 6.7 0.00014 32.7 -0.5 36 40-77 176-213 (506)
206 PF13592 HTH_33: Winged helix- 42.7 21 0.00047 20.5 1.8 26 96-121 19-44 (60)
207 PF03484 B5: tRNA synthetase B 42.6 65 0.0014 19.0 4.0 24 95-118 15-38 (70)
208 PF03698 UPF0180: Uncharacteri 41.6 48 0.001 20.7 3.3 25 97-121 6-30 (80)
209 KOG3010 Methyltransferase [Gen 40.6 47 0.001 25.4 3.7 61 13-77 57-130 (261)
210 smart00650 rADc Ribosomal RNA 39.8 1.2E+02 0.0026 20.8 5.6 61 3-66 29-99 (169)
211 TIGR02468 sucrsPsyn_pln sucros 39.2 62 0.0013 29.7 4.8 83 44-127 858-950 (1050)
212 PF05185 PRMT5: PRMT5 arginine 39.0 42 0.00091 27.6 3.6 69 7-77 210-291 (448)
213 PF07801 DUF1647: Protein of u 37.7 86 0.0019 21.7 4.4 42 2-43 80-126 (142)
214 PRK13605 endoribonuclease SymE 37.3 40 0.00087 22.5 2.6 12 105-116 44-55 (113)
215 PHA00457 inhibitor of host bac 37.1 47 0.001 19.6 2.6 14 108-121 47-60 (63)
216 KOG0902 Phosphatidylinositol 4 36.6 42 0.00091 31.9 3.4 30 103-132 1568-1601(1803)
217 PF01206 TusA: Sulfurtransfera 36.1 52 0.0011 19.1 2.9 30 99-128 38-67 (70)
218 cd05167 PI4Kc_III_alpha Phosph 36.1 74 0.0016 24.9 4.4 31 102-132 75-109 (311)
219 smart00481 POLIIIAc DNA polyme 36.1 74 0.0016 18.2 3.5 26 97-122 13-38 (67)
220 PF10087 DUF2325: Uncharacteri 34.8 60 0.0013 20.4 3.1 25 94-118 5-29 (97)
221 cd03413 CbiK_C Anaerobic cobal 34.4 43 0.00094 21.6 2.5 18 101-118 81-98 (103)
222 PRK04280 arginine repressor; P 34.1 39 0.00084 23.5 2.3 23 95-117 15-37 (148)
223 PRK03094 hypothetical protein; 33.6 82 0.0018 19.7 3.5 25 96-120 5-29 (80)
224 cd05831 Ribosomal_P1 Ribosomal 32.5 54 0.0012 21.4 2.7 28 91-118 10-37 (103)
225 cd05833 Ribosomal_P2 Ribosomal 32.5 44 0.00095 22.1 2.2 28 90-117 8-36 (109)
226 PF14814 UB2H: Bifunctional tr 32.3 44 0.00095 20.7 2.2 23 95-117 3-25 (85)
227 PF01316 Arg_repressor: Argini 31.6 42 0.0009 20.3 1.9 23 95-117 16-38 (70)
228 PF03793 PASTA: PASTA domain; 30.9 93 0.002 17.5 3.3 21 99-119 9-29 (63)
229 cd00291 SirA_YedF_YeeD SirA, Y 30.8 1.1E+02 0.0024 17.5 4.0 25 100-124 38-62 (69)
230 PRK00274 ksgA 16S ribosomal RN 30.7 1.5E+02 0.0032 22.3 5.2 62 2-65 57-126 (272)
231 COG3963 Phospholipid N-methylt 30.4 90 0.0019 22.7 3.6 34 43-77 117-150 (194)
232 COG1724 Predicted RNA binding 30.2 86 0.0019 18.8 3.0 22 98-119 6-27 (66)
233 cd03423 SirA SirA (also known 30.1 1.2E+02 0.0026 17.7 4.0 29 99-127 37-65 (69)
234 PRK01544 bifunctional N5-gluta 30.0 1.6E+02 0.0035 24.5 5.7 74 2-77 362-456 (506)
235 COG1438 ArgR Arginine represso 29.5 56 0.0012 22.9 2.5 23 95-117 17-39 (150)
236 PRK07417 arogenate dehydrogena 29.2 2.2E+02 0.0048 21.3 6.0 61 11-77 23-85 (279)
237 COG5459 Predicted rRNA methyla 29.2 6.2 0.00014 31.8 -2.6 37 40-77 179-219 (484)
238 PLN00138 large subunit ribosom 28.9 55 0.0012 21.8 2.3 28 90-117 8-36 (113)
239 COG0220 Predicted S-adenosylme 28.7 2.5E+02 0.0053 20.9 6.0 115 2-118 63-220 (227)
240 PF05772 NinB: NinB protein; 28.3 48 0.001 22.5 1.9 26 86-111 48-73 (127)
241 PF07862 Nif11: Nitrogen fixat 28.0 62 0.0013 17.6 2.1 18 99-116 27-44 (49)
242 cd05168 PI4Kc_III_beta Phospho 27.8 1.2E+02 0.0025 23.6 4.2 31 102-132 54-88 (293)
243 cd00891 PI3Kc Phosphoinositide 27.6 1.1E+02 0.0025 24.3 4.2 30 103-132 113-146 (352)
244 PF10258 RNA_GG_bind: PHAX RNA 27.6 14 0.00031 23.4 -0.7 64 46-110 15-82 (87)
245 cd05175 PI3Kc_IA_alpha Phospho 27.5 1.5E+02 0.0032 23.9 4.8 31 102-132 120-154 (366)
246 cd03422 YedF YedF is a bacteri 27.5 1.4E+02 0.003 17.5 4.0 27 99-125 37-63 (69)
247 PF08676 MutL_C: MutL C termin 27.2 1.2E+02 0.0026 20.2 3.9 17 101-117 68-84 (144)
248 PF01870 Hjc: Archaeal hollida 27.2 73 0.0016 20.1 2.5 21 100-120 2-22 (88)
249 PF06690 DUF1188: Protein of u 27.0 1.2E+02 0.0025 23.2 3.9 36 13-50 66-103 (252)
250 PTZ00338 dimethyladenosine tra 26.9 2.4E+02 0.0051 21.8 5.8 61 3-66 52-123 (294)
251 KOG3201 Uncharacterized conser 26.7 2E+02 0.0043 20.9 4.9 62 43-118 103-164 (201)
252 PF13319 DUF4090: Protein of u 26.6 69 0.0015 19.9 2.2 24 94-117 54-77 (84)
253 COG3581 Uncharacterized protei 26.5 54 0.0012 26.8 2.2 36 87-122 73-111 (420)
254 PF02475 Met_10: Met-10+ like- 26.5 1.4E+02 0.0031 21.7 4.3 67 3-76 117-195 (200)
255 cd00893 PI4Kc_III Phosphoinosi 26.5 1.5E+02 0.0033 22.9 4.7 30 103-132 55-88 (289)
256 cd00895 PI3Kc_C2_beta Phosphoi 26.2 1.4E+02 0.0031 23.9 4.5 31 102-132 113-147 (354)
257 COG3019 Predicted metal-bindin 25.9 82 0.0018 22.0 2.7 20 101-120 39-58 (149)
258 PF13137 DUF3983: Protein of u 25.8 36 0.00079 17.6 0.7 17 97-113 18-34 (34)
259 PRK05066 arginine repressor; P 25.7 54 0.0012 23.0 1.9 24 94-117 19-43 (156)
260 PRK11018 hypothetical protein; 25.5 1.6E+02 0.0035 17.7 4.0 28 99-126 46-73 (78)
261 cd05166 PI3Kc_II Phosphoinosit 25.5 1.2E+02 0.0026 24.2 4.0 30 103-132 113-146 (353)
262 cd05177 PI3Kc_C2_gamma Phospho 24.8 1.5E+02 0.0032 23.8 4.4 29 104-132 115-147 (354)
263 cd03420 SirA_RHOD_Pry_redox Si 24.6 1.6E+02 0.0034 17.2 3.9 29 99-127 37-65 (69)
264 PF02390 Methyltransf_4: Putat 24.6 2E+02 0.0043 20.6 4.7 70 2-77 32-127 (195)
265 PTZ00373 60S Acidic ribosomal 24.3 74 0.0016 21.1 2.2 28 90-117 10-38 (112)
266 cd05173 PI3Kc_IA_beta Phosphoi 24.3 1.5E+02 0.0032 23.9 4.3 30 103-132 117-150 (362)
267 PF04361 DUF494: Protein of un 23.8 40 0.00087 23.6 0.9 24 96-119 18-41 (155)
268 COG4421 Capsular polysaccharid 23.2 83 0.0018 25.2 2.6 21 99-119 241-261 (368)
269 COG2058 RPP1A Ribosomal protei 23.1 75 0.0016 21.0 2.0 25 93-117 11-35 (109)
270 PF08373 RAP: RAP domain; Int 22.7 91 0.002 17.3 2.2 19 101-119 19-38 (58)
271 cd05176 PI3Kc_C2_alpha Phospho 22.3 1.7E+02 0.0038 23.4 4.3 30 103-132 113-146 (353)
272 PF09949 DUF2183: Uncharacteri 21.9 98 0.0021 19.9 2.4 16 2-17 55-70 (100)
273 PF13344 Hydrolase_6: Haloacid 21.8 78 0.0017 20.1 2.0 26 91-116 34-59 (101)
274 PF00786 PBD: P21-Rho-binding 21.7 69 0.0015 18.4 1.5 20 98-117 24-43 (59)
275 PF03514 GRAS: GRAS domain fam 21.7 61 0.0013 25.9 1.7 26 94-119 300-330 (374)
276 PRK15128 23S rRNA m(5)C1962 me 21.5 4.4E+02 0.0095 21.3 7.0 89 11-111 243-356 (396)
277 COG0549 ArcC Carbamate kinase 21.4 97 0.0021 24.3 2.6 35 96-130 132-174 (312)
278 cd00894 PI3Kc_IB_gamma Phospho 21.4 1.6E+02 0.0035 23.7 4.0 30 103-132 122-155 (365)
279 KOG2918 Carboxymethyl transfer 21.3 2.1E+02 0.0046 22.7 4.5 76 45-121 190-278 (335)
280 PF01135 PCMT: Protein-L-isoas 21.1 99 0.0021 22.6 2.6 59 10-77 96-166 (209)
281 PF08557 Lipid_DES: Sphingolip 20.7 34 0.00074 18.4 0.1 11 3-13 20-30 (39)
282 COG3669 Alpha-L-fucosidase [Ca 20.6 1E+02 0.0022 25.2 2.8 23 94-116 49-71 (430)
283 cd05174 PI3Kc_IA_delta Phospho 20.6 1.9E+02 0.0041 23.3 4.2 29 104-132 118-150 (361)
284 KOG4274 Positive cofactor 2 (P 20.4 1.8E+02 0.0039 25.1 4.2 53 54-111 4-58 (742)
285 cd04882 ACT_Bt0572_2 C-termina 20.3 1.1E+02 0.0023 16.9 2.2 15 101-115 50-64 (65)
286 cd05165 PI3Kc_I Phosphoinositi 20.2 1.9E+02 0.0042 23.2 4.2 30 103-132 121-154 (366)
287 cd03421 SirA_like_N SirA_like_ 20.2 1.9E+02 0.0041 16.5 4.5 24 99-123 36-59 (67)
288 PF09286 Pro-kuma_activ: Pro-k 20.0 1.4E+02 0.0029 20.1 3.0 28 95-122 58-85 (143)
No 1
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.96 E-value=1.4e-30 Score=193.77 Aligned_cols=107 Identities=29% Similarity=0.492 Sum_probs=94.9
Q ss_pred HHHHHHHCCCCeEEEeechhHHhhhcCCCCeEEEe--ccccCCCceEEEehhhhcCCChHHHHHHHHHHhhhhCCCC--C
Q 043665 2 ARAIATAFPDIKCIVLICLLWWIIWWGTNNLEFFL--EFEAIPPANVVLLKWILHDWSDEESLRYLKKKCEESIPSN--D 77 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dlp~v~~~a~~~~ri~~~~--~~~~~P~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~--g 77 (132)
+.+++++||+++++++|+|+|++.+++.+||++++ ||+++|.||+|+++||||+|+|++|++||+ +++++|+|| |
T Consensus 115 ~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D~~~l~~vLh~~~d~~~~~iL~-~~~~al~pg~~g 193 (241)
T PF00891_consen 115 AIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVADVYLLRHVLHDWSDEDCVKILR-NAAAALKPGKDG 193 (241)
T ss_dssp HHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSESEEEEESSGGGS-HHHHHHHHH-HHHHHSEECTTE
T ss_pred HHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhccccceeeehhhhhcchHHHHHHHH-HHHHHhCCCCCC
Confidence 67899999999999999999999999999999999 889999999999999999999999999999 999999998 7
Q ss_pred ---------C--C--Ccch---hhhhhhhhhcCCCccCCHHHHHHHHH
Q 043665 78 ---------E--G--RKTQ---LCFDLLMATFLNGKEGSVYDWKKLFL 109 (132)
Q Consensus 78 ---------~--~--~~~~---~~~dl~m~~~~~g~~rt~~e~~~ll~ 109 (132)
+ . +... ..+|++||++++|++||.+||++||+
T Consensus 194 ~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 194 RLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEWEALLK 241 (241)
T ss_dssp EEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHHHHHHH
T ss_pred eEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHHHHHhC
Confidence 1 1 1122 58999999999999999999999985
No 2
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.94 E-value=3.2e-27 Score=181.91 Aligned_cols=130 Identities=28% Similarity=0.467 Sum_probs=116.9
Q ss_pred HHHHHHHCCCCeEEEeechhHHhhhcCC-CCeEEEe--ccccCCCceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCC-
Q 043665 2 ARAIATAFPDIKCIVLICLLWWIIWWGT-NNLEFFL--EFEAIPPANVVLLKWILHDWSDEESLRYLKKKCEESIPSND- 77 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dlp~v~~~a~~~-~ri~~~~--~~~~~P~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g- 77 (132)
+..++..||+++++.||+|.+++.++.. +.|+.+. +|.++|.+|+||++||||||+|++|+++|+ ||+++|+|+|
T Consensus 192 ~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvkiLk-nC~~sL~~~Gk 270 (342)
T KOG3178|consen 192 LKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVKILK-NCKKSLPPGGK 270 (342)
T ss_pred HHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccCChHHHHHHHH-HHHHhCCCCCE
Confidence 5667889999999999999999999885 7798888 998899999999999999999999999999 9999999999
Q ss_pred ----C----C--------CcchhhhhhhhhhcC-CCccCCHHHHHHHHHhCCCeeeEEEecCCcceEEEEEC
Q 043665 78 ----E----G--------RKTQLCFDLLMATFL-NGKEGSVYDWKKLFLAAGFSHYKITPNLGLWSLIEAYP 132 (132)
Q Consensus 78 ----~----~--------~~~~~~~dl~m~~~~-~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~ie~~p 132 (132)
+ . +.....+|+.|++.+ +|++||.+||+.++.++||.+..+...+...++||++|
T Consensus 271 Iiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 271 IIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred EEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEeccCccchheeCC
Confidence 1 1 112357889999886 59999999999999999999999999999999999875
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.79 E-value=9.7e-19 Score=134.39 Aligned_cols=116 Identities=15% Similarity=0.133 Sum_probs=91.1
Q ss_pred HHHHHHHCCCCeEEEeechhHHhhhcC-------CCCeEEEe--ccc-cCCCceEEEehhhhcCCChHHHHHHHHHHhhh
Q 043665 2 ARAIATAFPDIKCIVLICLLWWIIWWG-------TNNLEFFL--EFE-AIPPANVVLLKWILHDWSDEESLRYLKKKCEE 71 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dlp~v~~~a~~-------~~ri~~~~--~~~-~~P~~D~~ll~~vlh~~~de~~~~iL~~~~~~ 71 (132)
++.++++||+++++++|+|.+++.+++ .+||++++ +|+ ++|++|+|++++++|+|+++.+.++|+ ++++
T Consensus 164 ~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh~~~~~~~~~il~-~~~~ 242 (306)
T TIGR02716 164 SAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCK-KAFD 242 (306)
T ss_pred HHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhhcCChHHHHHHHH-HHHH
Confidence 578999999999999999999998764 57999998 775 677899999999999999999999999 9999
Q ss_pred hCCCCC-----C----C---Ccchhhhhh----hhhhcCCCccCCHHHHHHHHHhCCCeeeEEE
Q 043665 72 SIPSND-----E----G---RKTQLCFDL----LMATFLNGKEGSVYDWKKLFLAAGFSHYKIT 119 (132)
Q Consensus 72 al~~~g-----~----~---~~~~~~~dl----~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 119 (132)
+|+||| + . +......+. .|+... ..-++.+||.+||++|||+.++++
T Consensus 243 ~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 243 AMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSV-LGFKEQARYKEILESLGYKDVTMV 305 (306)
T ss_pred hcCCCCEEEEEEeccCCCCCchhhHHHHHHHHccccccc-ccCCCHHHHHHHHHHcCCCeeEec
Confidence 999999 1 1 111222222 111111 123457999999999999987754
No 4
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.17 E-value=5.5e-11 Score=88.35 Aligned_cols=118 Identities=21% Similarity=0.158 Sum_probs=85.5
Q ss_pred HHHHHHH--CCCCeEEEeec-hhHHhhhcC-------CCCeEEEe--ccc-cCCCceEEEehhhhcCCChHHHHHHHHHH
Q 043665 2 ARAIATA--FPDIKCIVLIC-LLWWIIWWG-------TNNLEFFL--EFE-AIPPANVVLLKWILHDWSDEESLRYLKKK 68 (132)
Q Consensus 2 ~~~l~~~--~P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~--~~~-~~P~~D~~ll~~vlh~~~de~~~~iL~~~ 68 (132)
+..++++ +|+.+++.+|+ |.+++.+++ ..+++++. +.+ +.+.+|++++..++|.+++++...+|+ +
T Consensus 68 ~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l~~~~~~~~~~~l~-~ 146 (239)
T TIGR00740 68 TLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLT-K 146 (239)
T ss_pred HHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecchhhCCHHHHHHHHH-H
Confidence 3456665 58999999999 889988865 34788887 554 556799999999999999998999999 9
Q ss_pred hhhhCCCCC-----C-C-Cc----chhhhhhhhhhc-CC-----------------CccCCHHHHHHHHHhCCCeeeEEE
Q 043665 69 CEESIPSND-----E-G-RK----TQLCFDLLMATF-LN-----------------GKEGSVYDWKKLFLAAGFSHYKIT 119 (132)
Q Consensus 69 ~~~al~~~g-----~-~-~~----~~~~~dl~m~~~-~~-----------------g~~rt~~e~~~ll~~aGf~~~~~~ 119 (132)
++++|+||| + . +. ......+.+... .+ -...|.+|+.+++++|||+.+++.
T Consensus 147 i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGF~~~~~~ 226 (239)
T TIGR00740 147 IYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIETHKARLKNVGFSHVELW 226 (239)
T ss_pred HHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHcCCchHHHH
Confidence 999999999 1 1 11 111222221110 11 135799999999999999976654
Q ss_pred e
Q 043665 120 P 120 (132)
Q Consensus 120 ~ 120 (132)
.
T Consensus 227 ~ 227 (239)
T TIGR00740 227 F 227 (239)
T ss_pred H
Confidence 3
No 5
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.98 E-value=1.8e-08 Score=76.23 Aligned_cols=117 Identities=11% Similarity=0.053 Sum_probs=83.5
Q ss_pred HHHHHHCCCCeEEEeec-hhHHhhhcC----CCCeEEEe--ccc-cCC--CceEEEehhhhcCCChHHHHHHHHHHhhhh
Q 043665 3 RAIATAFPDIKCIVLIC-LLWWIIWWG----TNNLEFFL--EFE-AIP--PANVVLLKWILHDWSDEESLRYLKKKCEES 72 (132)
Q Consensus 3 ~~l~~~~P~l~~~v~Dl-p~v~~~a~~----~~ri~~~~--~~~-~~P--~~D~~ll~~vlh~~~de~~~~iL~~~~~~a 72 (132)
..+++.+ +.+++.+|+ |..++.+++ .++++++. +.+ ++| .+|+++...++|++++++...+|+ ++++.
T Consensus 68 ~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~-~i~r~ 145 (263)
T PTZ00098 68 KYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFE-KCYKW 145 (263)
T ss_pred HHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHH-HHHHH
Confidence 4455555 679999998 667777765 45788887 554 566 399999999888898878899999 99999
Q ss_pred CCCCC-----CC--C---cchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEecC
Q 043665 73 IPSND-----EG--R---KTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITPNL 122 (132)
Q Consensus 73 l~~~g-----~~--~---~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 122 (132)
|+||| +. . .....+. .++........+.++|.++|++|||+.+...+..
T Consensus 146 LkPGG~lvi~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 146 LKPNGILLITDYCADKIENWDEEFK-AYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKDIS 204 (263)
T ss_pred cCCCcEEEEEEeccccccCcHHHHH-HHHHhcCCCCCCHHHHHHHHHHCCCCeeeEEeCc
Confidence 99999 11 1 1111110 1111112234689999999999999999887654
No 6
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.92 E-value=7.8e-10 Score=81.28 Aligned_cols=97 Identities=21% Similarity=0.331 Sum_probs=66.5
Q ss_pred hhHHhhhcC-----CCCe-EEEe----ccccCC-CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCC-----C-CCcc
Q 043665 20 LLWWIIWWG-----TNNL-EFFL----EFEAIP-PANVVLLKWILHDWSDEESLRYLKKKCEESIPSND-----E-GRKT 82 (132)
Q Consensus 20 p~v~~~a~~-----~~ri-~~~~----~~~~~P-~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g-----~-~~~~ 82 (132)
+.-++.|++ ..++ ++.. -|.|.+ .||+||..|++-+++|++.+..|+ +|+++|+|+| + ....
T Consensus 88 ~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~-RCk~~L~~~G~IvvKEN~~~~ 166 (218)
T PF05891_consen 88 EKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLK-RCKQALKPNGVIVVKENVSSS 166 (218)
T ss_dssp HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHH-HHHHHEEEEEEEEEEEEEESS
T ss_pred HHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHH-HHHHhCcCCcEEEEEecCCCC
Confidence 556666663 2344 4444 333444 399999999999999999999999 9999999999 2 1111
Q ss_pred h-hhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEec
Q 043665 83 Q-LCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITPN 121 (132)
Q Consensus 83 ~-~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 121 (132)
. ..+|-. .++-.||.+.|+++|++||+++++...-
T Consensus 167 ~~~~~D~~----DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 167 GFDEFDEE----DSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp SEEEEETT----TTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred CCcccCCc----cCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 1 234432 5677899999999999999999876544
No 7
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.91 E-value=3e-08 Score=77.75 Aligned_cols=113 Identities=13% Similarity=0.073 Sum_probs=83.3
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC---CCCeEEEe--ccc-cCC--CceEEEehhhhcCCChHHHHHHHHHHhhhh
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG---TNNLEFFL--EFE-AIP--PANVVLLKWILHDWSDEESLRYLKKKCEES 72 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~---~~ri~~~~--~~~-~~P--~~D~~ll~~vlh~~~de~~~~iL~~~~~~a 72 (132)
+..+++.+|..+++.+|. |..++.+++ ..+++++. +.+ +++ .+|+++..+++|.|+|.+ .+|+ ++++.
T Consensus 128 ~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~--~~L~-e~~rv 204 (340)
T PLN02490 128 TLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ--RGIK-EAYRV 204 (340)
T ss_pred HHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCCHH--HHHH-HHHHh
Confidence 356777888889999998 777887776 35777777 433 444 399999999999999864 6899 99999
Q ss_pred CCCCCC-------CCcc--h-hhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEecCC
Q 043665 73 IPSNDE-------GRKT--Q-LCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITPNLG 123 (132)
Q Consensus 73 l~~~g~-------~~~~--~-~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 123 (132)
|+|||- .+.. . ...+..| ...+.+|+.++|+++||+.+++.+++.
T Consensus 205 LkPGG~LvIi~~~~p~~~~~r~~~~~~~------~~~t~eEl~~lL~~aGF~~V~i~~i~~ 259 (340)
T PLN02490 205 LKIGGKACLIGPVHPTFWLSRFFADVWM------LFPKEEEYIEWFTKAGFKDVKLKRIGP 259 (340)
T ss_pred cCCCcEEEEEEecCcchhHHHHhhhhhc------cCCCHHHHHHHHHHCCCeEEEEEEcCh
Confidence 999991 1111 1 1112211 126899999999999999998877643
No 8
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.89 E-value=2.5e-08 Score=74.71 Aligned_cols=115 Identities=21% Similarity=0.207 Sum_probs=81.8
Q ss_pred HHHHH--HCCCCeEEEeec-hhHHhhhcC-------CCCeEEEe--ccc-cCCCceEEEehhhhcCCChHHHHHHHHHHh
Q 043665 3 RAIAT--AFPDIKCIVLIC-LLWWIIWWG-------TNNLEFFL--EFE-AIPPANVVLLKWILHDWSDEESLRYLKKKC 69 (132)
Q Consensus 3 ~~l~~--~~P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~--~~~-~~P~~D~~ll~~vlh~~~de~~~~iL~~~~ 69 (132)
..+++ .+|+.+++.+|. |.+++.+++ ..+++++. +.+ +.+.+|++++..++|.+++++...+++ ++
T Consensus 72 ~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l~~l~~~~~~~~l~-~i 150 (247)
T PRK15451 72 LSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQFLEPSERQALLD-KI 150 (247)
T ss_pred HHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHHHhCCHHHHHHHHH-HH
Confidence 44555 479999999998 889998875 34788888 444 445699999999999999988899999 99
Q ss_pred hhhCCCCC-----C-----CCc-chhhhhhhhh----------------hcC-C-CccCCHHHHHHHHHhCCCeeeEE
Q 043665 70 EESIPSND-----E-----GRK-TQLCFDLLMA----------------TFL-N-GKEGSVYDWKKLFLAAGFSHYKI 118 (132)
Q Consensus 70 ~~al~~~g-----~-----~~~-~~~~~dl~m~----------------~~~-~-g~~rt~~e~~~ll~~aGf~~~~~ 118 (132)
+++|+||| + .+. ....+.+.+. -.. + -..-|+++..+||++|||+.+..
T Consensus 151 ~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~~ 228 (247)
T PRK15451 151 YQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSEL 228 (247)
T ss_pred HHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcCchhHHH
Confidence 99999999 1 111 0111111100 001 1 11358899999999999986543
No 9
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.88 E-value=5.3e-08 Score=70.66 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=89.7
Q ss_pred HHHHHHHCCC-CeEEEeec-hhHHhhhcC----CCCeEEEe--ccc-cCC--CceEEEehhhhcCCChHHHHHHHHHHhh
Q 043665 2 ARAIATAFPD-IKCIVLIC-LLWWIIWWG----TNNLEFFL--EFE-AIP--PANVVLLKWILHDWSDEESLRYLKKKCE 70 (132)
Q Consensus 2 ~~~l~~~~P~-l~~~v~Dl-p~v~~~a~~----~~ri~~~~--~~~-~~P--~~D~~ll~~vlh~~~de~~~~iL~~~~~ 70 (132)
+..+++++|. .+++.+|. |..++.+++ .++++++. +.+ +.+ .+|++++...+|+.++ ...+|+ +++
T Consensus 54 ~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~--~~~~l~-~~~ 130 (223)
T TIGR01934 54 AIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTD--IQKALR-EMY 130 (223)
T ss_pred HHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCccc--HHHHHH-HHH
Confidence 4567888887 78999998 677777665 35788877 444 333 4999999999998876 568999 999
Q ss_pred hhCCCCC-----C--CCc---chhhhhhhh---hhcCC-----------------CccCCHHHHHHHHHhCCCeeeEEEe
Q 043665 71 ESIPSND-----E--GRK---TQLCFDLLM---ATFLN-----------------GKEGSVYDWKKLFLAAGFSHYKITP 120 (132)
Q Consensus 71 ~al~~~g-----~--~~~---~~~~~dl~m---~~~~~-----------------g~~rt~~e~~~ll~~aGf~~~~~~~ 120 (132)
+.|+||| + .+. ....++..+ +...+ ....+.++|.++|+++||+...+.+
T Consensus 131 ~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 210 (223)
T TIGR01934 131 RVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRS 210 (223)
T ss_pred HHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeee
Confidence 9999999 1 111 111222221 11011 1134789999999999999999888
Q ss_pred cCC-cceEEEEEC
Q 043665 121 NLG-LWSLIEAYP 132 (132)
Q Consensus 121 ~~~-~~~~ie~~p 132 (132)
..+ ...++++++
T Consensus 211 ~~~~~~~~~~~~~ 223 (223)
T TIGR01934 211 LTFGVAAIHVGKK 223 (223)
T ss_pred eecceeeEEEecC
Confidence 765 477887765
No 10
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.86 E-value=1.1e-07 Score=71.91 Aligned_cols=126 Identities=16% Similarity=0.101 Sum_probs=86.1
Q ss_pred HHHHHHC-CCCeEEEeec-hhHHhhhcC---------CCCeEEEe--ccc-cCCC--ceEEEehhhhcCCChHHHHHHHH
Q 043665 3 RAIATAF-PDIKCIVLIC-LLWWIIWWG---------TNNLEFFL--EFE-AIPP--ANVVLLKWILHDWSDEESLRYLK 66 (132)
Q Consensus 3 ~~l~~~~-P~l~~~v~Dl-p~v~~~a~~---------~~ri~~~~--~~~-~~P~--~D~~ll~~vlh~~~de~~~~iL~ 66 (132)
..+++.+ |+.+++.+|. |.+++.+++ .++++++. ..+ ++|. +|++++...+|+++| -.++|+
T Consensus 89 ~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d--~~~~l~ 166 (261)
T PLN02233 89 FLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVD--RLKAMQ 166 (261)
T ss_pred HHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCC--HHHHHH
Confidence 4466664 6789999998 778887753 24788887 444 5553 999999999999986 467899
Q ss_pred HHhhhhCCCCC-----C--CC--cc-hhhhhhh----h--h-hcCC------------CccCCHHHHHHHHHhCCCeeeE
Q 043665 67 KKCEESIPSND-----E--GR--KT-QLCFDLL----M--A-TFLN------------GKEGSVYDWKKLFLAAGFSHYK 117 (132)
Q Consensus 67 ~~~~~al~~~g-----~--~~--~~-~~~~dl~----m--~-~~~~------------g~~rt~~e~~~ll~~aGf~~~~ 117 (132)
++++.|+||| + .+ +. ....... + + ...+ ...+|.+|+.++++++||+.++
T Consensus 167 -ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~ 245 (261)
T PLN02233 167 -EMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAK 245 (261)
T ss_pred -HHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEE
Confidence 9999999999 1 11 11 1111110 0 0 0011 1246999999999999999988
Q ss_pred EEecC-CcceEEEEE
Q 043665 118 ITPNL-GLWSLIEAY 131 (132)
Q Consensus 118 ~~~~~-~~~~~ie~~ 131 (132)
..... +..++..++
T Consensus 246 ~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 246 HYEISGGLMGNLVAT 260 (261)
T ss_pred EEEcCCCeeEEEEEe
Confidence 87765 445555543
No 11
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.86 E-value=7.4e-08 Score=70.91 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=88.7
Q ss_pred HHHHHHHC-CCCeEEEeec-hhHHhhhcC------CCCeEEEe--ccc-cCC--CceEEEehhhhcCCChHHHHHHHHHH
Q 043665 2 ARAIATAF-PDIKCIVLIC-LLWWIIWWG------TNNLEFFL--EFE-AIP--PANVVLLKWILHDWSDEESLRYLKKK 68 (132)
Q Consensus 2 ~~~l~~~~-P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~-~~P--~~D~~ll~~vlh~~~de~~~~iL~~~ 68 (132)
+..+++.+ |+.+++.+|+ |..++.+++ .++++++. ..+ ++| .+|++++...+|.+++. .++|+ .
T Consensus 60 ~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~--~~~l~-~ 136 (231)
T TIGR02752 60 SIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDY--MQVLR-E 136 (231)
T ss_pred HHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCCH--HHHHH-H
Confidence 34566665 7789999999 778877764 35788776 444 444 39999999999988774 57899 9
Q ss_pred hhhhCCCCC-----C-C-Ccch---hh----hhhhhhh----------------cCCCccCCHHHHHHHHHhCCCeeeEE
Q 043665 69 CEESIPSND-----E-G-RKTQ---LC----FDLLMAT----------------FLNGKEGSVYDWKKLFLAAGFSHYKI 118 (132)
Q Consensus 69 ~~~al~~~g-----~-~-~~~~---~~----~dl~m~~----------------~~~g~~rt~~e~~~ll~~aGf~~~~~ 118 (132)
+.+.|+||| + . +... .. +...+-. .......|.+|++++|+++||+..++
T Consensus 137 ~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 216 (231)
T TIGR02752 137 MYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEV 216 (231)
T ss_pred HHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEE
Confidence 999999999 1 1 1111 00 1100000 00112367899999999999999998
Q ss_pred EecC-CcceEEEEEC
Q 043665 119 TPNL-GLWSLIEAYP 132 (132)
Q Consensus 119 ~~~~-~~~~~ie~~p 132 (132)
.+.. |..+++.++|
T Consensus 217 ~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 217 KSYTGGVAAMHMGFK 231 (231)
T ss_pred EEcccceEEEEEEEC
Confidence 8876 6778877765
No 12
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.83 E-value=1.7e-07 Score=68.69 Aligned_cols=128 Identities=16% Similarity=0.160 Sum_probs=89.0
Q ss_pred HHHHHHHCC-CCeEEEeec-hhHHhhhcC-------CCCeEEEe--ccc-cCC--CceEEEehhhhcCCChHHHHHHHHH
Q 043665 2 ARAIATAFP-DIKCIVLIC-LLWWIIWWG-------TNNLEFFL--EFE-AIP--PANVVLLKWILHDWSDEESLRYLKK 67 (132)
Q Consensus 2 ~~~l~~~~P-~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~--~~~-~~P--~~D~~ll~~vlh~~~de~~~~iL~~ 67 (132)
+..+++.+| +.+++++|. |..++.+++ ..+++++. +.+ +.+ .+|++++.+++|.+++ ...+|+
T Consensus 66 ~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~--~~~~l~- 142 (239)
T PRK00216 66 AIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPD--IDKALR- 142 (239)
T ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCC--HHHHHH-
Confidence 456777787 789999998 667777665 24677777 444 332 3999999999999987 467899
Q ss_pred HhhhhCCCCC-----C--CCc---chhhhhhh---hhh-----cCC------------CccCCHHHHHHHHHhCCCeeeE
Q 043665 68 KCEESIPSND-----E--GRK---TQLCFDLL---MAT-----FLN------------GKEGSVYDWKKLFLAAGFSHYK 117 (132)
Q Consensus 68 ~~~~al~~~g-----~--~~~---~~~~~dl~---m~~-----~~~------------g~~rt~~e~~~ll~~aGf~~~~ 117 (132)
++.+.|+||| + .+. .....+.. ++. ..+ ...++.++|.++|++|||+...
T Consensus 143 ~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 222 (239)
T PRK00216 143 EMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVR 222 (239)
T ss_pred HHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceee
Confidence 9999999999 1 111 11111111 100 001 1235789999999999999999
Q ss_pred EEecC-CcceEEEEEC
Q 043665 118 ITPNL-GLWSLIEAYP 132 (132)
Q Consensus 118 ~~~~~-~~~~~ie~~p 132 (132)
+.... +..+++.+++
T Consensus 223 ~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 223 YRNLTGGIVALHVGYK 238 (239)
T ss_pred eeeeecCcEEEEEEec
Confidence 88864 6678888764
No 13
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.77 E-value=1.6e-07 Score=68.77 Aligned_cols=115 Identities=8% Similarity=0.054 Sum_probs=83.0
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC-------CCCeEEEe--ccc-cCCC-ceEEEehhhhcCCChHHHHHHHHHHh
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG-------TNNLEFFL--EFE-AIPP-ANVVLLKWILHDWSDEESLRYLKKKC 69 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~--~~~-~~P~-~D~~ll~~vlh~~~de~~~~iL~~~~ 69 (132)
+..+++.+|+.+++.+|+ |..++.++. .++++++. +.+ +.++ +|+++..+++|.+++ -..+|+ ++
T Consensus 14 ~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~~~--~~~~l~-~~ 90 (224)
T smart00828 14 LIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHIKD--KMDLFS-NI 90 (224)
T ss_pred HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhCCC--HHHHHH-HH
Confidence 567888999999999999 556666654 46788887 544 4554 999999999999977 468999 99
Q ss_pred hhhCCCCC-----CC-CcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEecC
Q 043665 70 EESIPSND-----EG-RKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITPNL 122 (132)
Q Consensus 70 ~~al~~~g-----~~-~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 122 (132)
++.|+||| +. .......+. ........|.++|.++++++||++.+....+
T Consensus 91 ~~~LkpgG~l~i~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~ 146 (224)
T smart00828 91 SRHLKDGGHLVLADFIANLLSAIEH---EETTSYLVTREEWAELLARNNLRVVEGVDAS 146 (224)
T ss_pred HHHcCCCCEEEEEEcccccCccccc---cccccccCCHHHHHHHHHHCCCeEEEeEECc
Confidence 99999999 11 110000000 0012235789999999999999999877653
No 14
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.74 E-value=1.2e-08 Score=76.09 Aligned_cols=128 Identities=16% Similarity=0.168 Sum_probs=54.3
Q ss_pred HHHHHHH-CCCCeEEEeec-hhHHhhhcC------CCCeEEEe--ccc-cCCC--ceEEEehhhhcCCChHHHHHHHHHH
Q 043665 2 ARAIATA-FPDIKCIVLIC-LLWWIIWWG------TNNLEFFL--EFE-AIPP--ANVVLLKWILHDWSDEESLRYLKKK 68 (132)
Q Consensus 2 ~~~l~~~-~P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~-~~P~--~D~~ll~~vlh~~~de~~~~iL~~~ 68 (132)
+..+++. .|+.+++.+|+ |.+++.+++ ..+|+++. ..+ |+|. +|+++++..||+++|. .+.|+ .
T Consensus 62 ~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~--~~~l~-E 138 (233)
T PF01209_consen 62 TRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDR--ERALR-E 138 (233)
T ss_dssp HHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSH--HHHHH-H
T ss_pred HHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCH--HHHHH-H
Confidence 3456665 46789999998 789998875 35899988 444 6663 9999999999999984 56899 9
Q ss_pred hhhhCCCCC---------CC-Ccchhhhhhhh--------------------hhcCCCccCCHHHHHHHHHhCCCeeeEE
Q 043665 69 CEESIPSND---------EG-RKTQLCFDLLM--------------------ATFLNGKEGSVYDWKKLFLAAGFSHYKI 118 (132)
Q Consensus 69 ~~~al~~~g---------~~-~~~~~~~dl~m--------------------~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 118 (132)
+++.|+||| +. +.....+.+.+ +...=-.-.+.+|+.++++++||+.++.
T Consensus 139 ~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~ 218 (233)
T PF01209_consen 139 MYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEY 218 (233)
T ss_dssp HHHHEEEEEEEEEEEEEB-SSHHHHHHHHH--------------------------------------------------
T ss_pred HHHHcCCCeEEEEeeccCCCCchhhceeeeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999 11 11111111111 1000112357789999999999999888
Q ss_pred Eec-CCcceEEEEEC
Q 043665 119 TPN-LGLWSLIEAYP 132 (132)
Q Consensus 119 ~~~-~~~~~~ie~~p 132 (132)
.+. .|..++..++|
T Consensus 219 ~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 219 RPLTFGIVTIHVGTK 233 (233)
T ss_dssp ---------------
T ss_pred cccccccccccccCC
Confidence 765 45566665543
No 15
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.68 E-value=5.1e-07 Score=68.18 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=80.1
Q ss_pred CCCCeEEEeec-hhHHhhhcC------CCCeEEEe--ccc-cCC--CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCC
Q 043665 9 FPDIKCIVLIC-LLWWIIWWG------TNNLEFFL--EFE-AIP--PANVVLLKWILHDWSDEESLRYLKKKCEESIPSN 76 (132)
Q Consensus 9 ~P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~-~~P--~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~ 76 (132)
.|+.+++.+|. |..++.+++ .+++++.. +.+ +++ .+|+++...++|.++|. ..+++ ++.+.|+||
T Consensus 100 g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~--~~~l~-~~~r~LkpG 176 (272)
T PRK11873 100 GPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVINLSPDK--ERVFK-EAFRVLKPG 176 (272)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCcccCCCCH--HHHHH-HHHHHcCCC
Confidence 46778999998 888888875 35888876 433 444 39999999999988774 56899 999999999
Q ss_pred CC---------CC-cchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEe
Q 043665 77 DE---------GR-KTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITP 120 (132)
Q Consensus 77 g~---------~~-~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 120 (132)
|. .+ ......++.++..+.+...+.++|.++|+++||..+++..
T Consensus 177 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 177 GRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred cEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEe
Confidence 91 11 1112233444444456678999999999999999877643
No 16
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.66 E-value=5e-07 Score=67.74 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=78.1
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcCCCCeEEEe--ccccC--CCceEEEehhhhcCCChHHHHHHHHHHhhhhCCCC
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWGTNNLEFFL--EFEAI--PPANVVLLKWILHDWSDEESLRYLKKKCEESIPSN 76 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~~ri~~~~--~~~~~--P~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~ 76 (132)
+..+++++|+.+++.+|. |.+++.+++. +++++. +.+.. +.+|+++++.++|..+|. .++|+ ++++.|+||
T Consensus 44 ~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~d~--~~~l~-~~~~~Lkpg 119 (255)
T PRK14103 44 TRYLARRWPGAVIEALDSSPEMVAAARER-GVDARTGDVRDWKPKPDTDVVVSNAALQWVPEH--ADLLV-RWVDELAPG 119 (255)
T ss_pred HHHHHHHCCCCEEEEEECCHHHHHHHHhc-CCcEEEcChhhCCCCCCceEEEEehhhhhCCCH--HHHHH-HHHHhCCCC
Confidence 567888899999999999 8888888663 577776 33322 249999999999988764 67899 999999999
Q ss_pred C------CCC----cchhh--------hhhhhhh--c-CCCccCCHHHHHHHHHhCCCeeeE
Q 043665 77 D------EGR----KTQLC--------FDLLMAT--F-LNGKEGSVYDWKKLFLAAGFSHYK 117 (132)
Q Consensus 77 g------~~~----~~~~~--------~dl~m~~--~-~~g~~rt~~e~~~ll~~aGf~~~~ 117 (132)
| +.. ..... +.-.+-. . .+....+.+++.++|++|||++..
T Consensus 120 G~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 181 (255)
T PRK14103 120 SWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAGCKVDA 181 (255)
T ss_pred cEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCCCeEEE
Confidence 9 111 11000 1100000 0 122346899999999999998543
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.64 E-value=6e-07 Score=72.86 Aligned_cols=114 Identities=11% Similarity=0.072 Sum_probs=81.4
Q ss_pred HHHHHHCCCCeEEEeec-hhHHhhhcC-----CCCeEEEe--ccc-cCC-C-ceEEEehhhhcCCChHHHHHHHHHHhhh
Q 043665 3 RAIATAFPDIKCIVLIC-LLWWIIWWG-----TNNLEFFL--EFE-AIP-P-ANVVLLKWILHDWSDEESLRYLKKKCEE 71 (132)
Q Consensus 3 ~~l~~~~P~l~~~v~Dl-p~v~~~a~~-----~~ri~~~~--~~~-~~P-~-~D~~ll~~vlh~~~de~~~~iL~~~~~~ 71 (132)
..+++.+ +.+++.+|+ |..++.++. ..+++|.. +++ ++| + +|+++...++|.++|. ..+|+ ++++
T Consensus 282 ~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~d~--~~~l~-~~~r 357 (475)
T PLN02336 282 FYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQDK--PALFR-SFFK 357 (475)
T ss_pred HHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccccCCH--HHHHH-HHHH
Confidence 4556555 789999999 677777654 45788876 665 555 3 9999999999999874 58899 9999
Q ss_pred hCCCCC-----CC---C-cchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEec
Q 043665 72 SIPSND-----EG---R-KTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITPN 121 (132)
Q Consensus 72 al~~~g-----~~---~-~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 121 (132)
.|+||| +. + .....+.- .+...+...++.+++.++++++||+++.+...
T Consensus 358 ~LkpgG~l~i~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d~ 415 (475)
T PLN02336 358 WLKPGGKVLISDYCRSPGTPSPEFAE-YIKQRGYDLHDVQAYGQMLKDAGFDDVIAEDR 415 (475)
T ss_pred HcCCCeEEEEEEeccCCCCCcHHHHH-HHHhcCCCCCCHHHHHHHHHHCCCeeeeeecc
Confidence 999999 11 1 11111111 11123456789999999999999999877653
No 18
>PLN02244 tocopherol O-methyltransferase
Probab=98.59 E-value=1e-06 Score=68.96 Aligned_cols=117 Identities=9% Similarity=0.017 Sum_probs=80.2
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC-------CCCeEEEe--ccc-cCC--CceEEEehhhhcCCChHHHHHHHHHH
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG-------TNNLEFFL--EFE-AIP--PANVVLLKWILHDWSDEESLRYLKKK 68 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~--~~~-~~P--~~D~~ll~~vlh~~~de~~~~iL~~~ 68 (132)
+..+++++ +.+++.+|+ |..++.+++ .++++++. +.+ +++ .+|+++....+|+++| ..++++ +
T Consensus 133 ~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d--~~~~l~-e 208 (340)
T PLN02244 133 SRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPD--KRKFVQ-E 208 (340)
T ss_pred HHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCC--HHHHHH-H
Confidence 45667777 789999998 666766554 35788887 554 555 3999999999999987 468899 9
Q ss_pred hhhhCCCCCC----------C-Ccchh--hhhhhhh-----hcCCCccCCHHHHHHHHHhCCCeeeEEEecC
Q 043665 69 CEESIPSNDE----------G-RKTQL--CFDLLMA-----TFLNGKEGSVYDWKKLFLAAGFSHYKITPNL 122 (132)
Q Consensus 69 ~~~al~~~g~----------~-~~~~~--~~dl~m~-----~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 122 (132)
+++.|+|||- . +.... ......+ ...-....+.++|.++++++||..+++....
T Consensus 209 ~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s 280 (340)
T PLN02244 209 LARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWS 280 (340)
T ss_pred HHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCc
Confidence 9999999991 0 11000 0011111 0011123589999999999999998877653
No 19
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.53 E-value=1.7e-06 Score=64.75 Aligned_cols=126 Identities=15% Similarity=0.125 Sum_probs=89.9
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC------CCCeEEEe--ccc-cCCC--ceEEEehhhhcCCChHHHHHHHHHHh
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG------TNNLEFFL--EFE-AIPP--ANVVLLKWILHDWSDEESLRYLKKKC 69 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~-~~P~--~D~~ll~~vlh~~~de~~~~iL~~~~ 69 (132)
+..+++..+..+++++|. +++++.+++ -..|+|+. ..+ |+|. +|+|.++.-||+.+| ..+.|+ .+
T Consensus 66 a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d--~~~aL~-E~ 142 (238)
T COG2226 66 ALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTD--IDKALK-EM 142 (238)
T ss_pred HHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCC--HHHHHH-HH
Confidence 678899999999999998 779999986 12288888 444 6773 999999999999997 678999 99
Q ss_pred hhhCCCCC-----C-----CCcchhh---hhhh------------------hhhcCCCccCCHHHHHHHHHhCCCeeeEE
Q 043665 70 EESIPSND-----E-----GRKTQLC---FDLL------------------MATFLNGKEGSVYDWKKLFLAAGFSHYKI 118 (132)
Q Consensus 70 ~~al~~~g-----~-----~~~~~~~---~dl~------------------m~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 118 (132)
++.|+||| + .+..... +... .+....-+..+.+++.++++++||+.+..
T Consensus 143 ~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~ 222 (238)
T COG2226 143 YRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRY 222 (238)
T ss_pred HHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEee
Confidence 99999999 1 1111111 1111 11111123467899999999999998886
Q ss_pred Eec-CCcceEEEE
Q 043665 119 TPN-LGLWSLIEA 130 (132)
Q Consensus 119 ~~~-~~~~~~ie~ 130 (132)
... .|...+.-.
T Consensus 223 ~~~~~G~~~l~~g 235 (238)
T COG2226 223 ENLTFGIVALHRG 235 (238)
T ss_pred EeeeeeeEEEEEE
Confidence 554 344555443
No 20
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.49 E-value=2.8e-06 Score=66.18 Aligned_cols=116 Identities=15% Similarity=0.051 Sum_probs=75.3
Q ss_pred HHHHHHHCCCCeEEEeechh-HHhhhc-------CCCCeEEEe-ccc--cCCC-ceEEEehhhhcCCChHHHHHHHHHHh
Q 043665 2 ARAIATAFPDIKCIVLICLL-WWIIWW-------GTNNLEFFL-EFE--AIPP-ANVVLLKWILHDWSDEESLRYLKKKC 69 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dlp~-v~~~a~-------~~~ri~~~~-~~~--~~P~-~D~~ll~~vlh~~~de~~~~iL~~~~ 69 (132)
+..+++..|. +++.+|... .+..++ ...+++++. -++ +.++ +|++++..+||+..|. ..+|+ ++
T Consensus 137 ~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~H~~dp--~~~L~-~l 212 (322)
T PRK15068 137 MWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYHRRSP--LDHLK-QL 212 (322)
T ss_pred HHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhhccCCH--HHHHH-HH
Confidence 3566777766 599999633 333221 135788887 333 3343 9999999999988764 57899 99
Q ss_pred hhhCCCCCC---------CCcchhhhhhhhhhcC-C-CccCCHHHHHHHHHhCCCeeeEEEec
Q 043665 70 EESIPSNDE---------GRKTQLCFDLLMATFL-N-GKEGSVYDWKKLFLAAGFSHYKITPN 121 (132)
Q Consensus 70 ~~al~~~g~---------~~~~~~~~dl~m~~~~-~-g~~rt~~e~~~ll~~aGf~~~~~~~~ 121 (132)
++.|+|||. ................ + -..+|.+++.++++++||+.+++...
T Consensus 213 ~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 213 KDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDV 275 (322)
T ss_pred HHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeC
Confidence 999999991 1111111111001111 1 12479999999999999999988754
No 21
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.48 E-value=4.4e-07 Score=59.21 Aligned_cols=75 Identities=19% Similarity=0.230 Sum_probs=61.7
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC-------CCCeEEEe--c-cc-cCC-CceEEEehh-hhcCCC-hHHHHHHHH
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG-------TNNLEFFL--E-FE-AIP-PANVVLLKW-ILHDWS-DEESLRYLK 66 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~--~-~~-~~P-~~D~~ll~~-vlh~~~-de~~~~iL~ 66 (132)
+..+++.+|+.+++.+|. |.+++.+++ .+||+++. + +. ..+ ++|++++.. .+|.+. .++..++|+
T Consensus 16 ~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~ 95 (112)
T PF12847_consen 16 SIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTLHFLLPLDERRRVLE 95 (112)
T ss_dssp HHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSGGGCCHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCccccccchhHHHHHHH
Confidence 567888899999999999 888888775 68999998 6 33 333 599999999 677554 468899999
Q ss_pred HHhhhhCCCCC
Q 043665 67 KKCEESIPSND 77 (132)
Q Consensus 67 ~~~~~al~~~g 77 (132)
++++.|+|||
T Consensus 96 -~~~~~L~pgG 105 (112)
T PF12847_consen 96 -RIRRLLKPGG 105 (112)
T ss_dssp -HHHHHEEEEE
T ss_pred -HHHHhcCCCc
Confidence 9999999987
No 22
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.48 E-value=9.5e-08 Score=61.44 Aligned_cols=73 Identities=18% Similarity=0.169 Sum_probs=46.6
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC------CCCeEEEe-----ccccC-C-CceEEEehhhhcCCChHHHHHHHHH
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG------TNNLEFFL-----EFEAI-P-PANVVLLKWILHDWSDEESLRYLKK 67 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~-----~~~~~-P-~~D~~ll~~vlh~~~de~~~~iL~~ 67 (132)
+..+++++|..+.+.+|. |.+++.+++ ........ .++.. + .+|++++.++||.+ ++...+|+
T Consensus 11 ~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l--~~~~~~l~- 87 (99)
T PF08242_consen 11 LRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL--EDIEAVLR- 87 (99)
T ss_dssp TTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS----S-HHHHHH-
T ss_pred HHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh--hhHHHHHH-
Confidence 456888999999999998 778877776 22333333 22322 3 59999999999999 44679999
Q ss_pred HhhhhCCCCC
Q 043665 68 KCEESIPSND 77 (132)
Q Consensus 68 ~~~~al~~~g 77 (132)
++++.|+|||
T Consensus 88 ~~~~~L~pgG 97 (99)
T PF08242_consen 88 NIYRLLKPGG 97 (99)
T ss_dssp HHTTT-TSS-
T ss_pred HHHHHcCCCC
Confidence 9999999997
No 23
>PRK08317 hypothetical protein; Provisional
Probab=98.44 E-value=4.8e-06 Score=60.69 Aligned_cols=115 Identities=15% Similarity=0.120 Sum_probs=77.4
Q ss_pred HHHHHHHC-CCCeEEEeec-hhHHhhhcC-----CCCeEEEe--ccc-cCC--CceEEEehhhhcCCChHHHHHHHHHHh
Q 043665 2 ARAIATAF-PDIKCIVLIC-LLWWIIWWG-----TNNLEFFL--EFE-AIP--PANVVLLKWILHDWSDEESLRYLKKKC 69 (132)
Q Consensus 2 ~~~l~~~~-P~l~~~v~Dl-p~v~~~a~~-----~~ri~~~~--~~~-~~P--~~D~~ll~~vlh~~~de~~~~iL~~~~ 69 (132)
+..+++.+ |..+++.+|+ |..++.+++ ..++++.. +.+ +++ .+|++++.+++|.++|. ..+++ ++
T Consensus 34 ~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~--~~~l~-~~ 110 (241)
T PRK08317 34 ARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDP--ARALA-EI 110 (241)
T ss_pred HHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechhhccCCH--HHHHH-HH
Confidence 45667777 7889999998 566666654 45677776 433 444 49999999999999874 56899 99
Q ss_pred hhhCCCCC-----CCC--------cchhhhh-h-hhhhcCCCccCCHHHHHHHHHhCCCeeeEEE
Q 043665 70 EESIPSND-----EGR--------KTQLCFD-L-LMATFLNGKEGSVYDWKKLFLAAGFSHYKIT 119 (132)
Q Consensus 70 ~~al~~~g-----~~~--------~~~~~~d-l-~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 119 (132)
++.|+||| +.. ....... + ..+........+..+|.++++++||+.+.+.
T Consensus 111 ~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 175 (241)
T PRK08317 111 ARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAGLTDIEVE 175 (241)
T ss_pred HHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCCCceeEE
Confidence 99999999 110 0000111 1 1111112234566799999999999976653
No 24
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.41 E-value=1.9e-06 Score=64.61 Aligned_cols=116 Identities=14% Similarity=0.030 Sum_probs=77.2
Q ss_pred HHHHHHCCCCeEEEeec-hhHHhhhcC-------CCCeEEEe--ccc--cCC--CceEEEehhhhcCCChHHHHHHHHHH
Q 043665 3 RAIATAFPDIKCIVLIC-LLWWIIWWG-------TNNLEFFL--EFE--AIP--PANVVLLKWILHDWSDEESLRYLKKK 68 (132)
Q Consensus 3 ~~l~~~~P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~--~~~--~~P--~~D~~ll~~vlh~~~de~~~~iL~~~ 68 (132)
..+++. +.+++.+|. |.+++.+++ .++++++. +.+ +.+ .+|++++..+||.++|. ..+|+ +
T Consensus 60 ~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~--~~~l~-~ 134 (255)
T PRK11036 60 IKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADP--KSVLQ-T 134 (255)
T ss_pred HHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCH--HHHHH-H
Confidence 445554 568999999 788888775 35788876 332 333 39999999999998775 47899 9
Q ss_pred hhhhCCCCCC-----CCcchhh--------hhh---hhhh-----cCCCccCCHHHHHHHHHhCCCeeeEEEecCC
Q 043665 69 CEESIPSNDE-----GRKTQLC--------FDL---LMAT-----FLNGKEGSVYDWKKLFLAAGFSHYKITPNLG 123 (132)
Q Consensus 69 ~~~al~~~g~-----~~~~~~~--------~dl---~m~~-----~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 123 (132)
+++.|+|||- ....... ++. .+.. ..-....+.+++.++|+++||+++.+.-+++
T Consensus 135 ~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~~~gi~~ 210 (255)
T PRK11036 135 LWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQIMGKTGVRV 210 (255)
T ss_pred HHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeEeeeeeEEE
Confidence 9999999991 0110000 000 0000 0001236789999999999999987765543
No 25
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.39 E-value=1.5e-06 Score=61.09 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=72.1
Q ss_pred Eeec-hhHHhhhcC---------CCCeEEEe--ccc-cCC--CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCC---
Q 043665 16 VLIC-LLWWIIWWG---------TNNLEFFL--EFE-AIP--PANVVLLKWILHDWSDEESLRYLKKKCEESIPSND--- 77 (132)
Q Consensus 16 v~Dl-p~v~~~a~~---------~~ri~~~~--~~~-~~P--~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g--- 77 (132)
.+|. +++++.|++ ..+|+++. ..+ +++ .+|++++..++|+++| ..+.|+ ++++.|+|||
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d--~~~~l~-ei~rvLkpGG~l~ 78 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD--RLRAMK-EMYRVLKPGSRVS 78 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCC--HHHHHH-HHHHHcCcCeEEE
Confidence 4676 677877743 24688887 433 444 3999999999999976 468999 9999999999
Q ss_pred --C----CCcchh-----hhhhhhh----hcCC-----------CccCCHHHHHHHHHhCCCeeeEEEecC-CcceEEE
Q 043665 78 --E----GRKTQL-----CFDLLMA----TFLN-----------GKEGSVYDWKKLFLAAGFSHYKITPNL-GLWSLIE 129 (132)
Q Consensus 78 --~----~~~~~~-----~~dl~m~----~~~~-----------g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~~ie 129 (132)
+ .+.... .+...+. .... ..-.+.+|+.++|+++||+.++..... |..++..
T Consensus 79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~~ 157 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGNLV 157 (160)
T ss_pred EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhHeeE
Confidence 1 111000 0000000 0000 223688999999999999988877664 3344443
No 26
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.35 E-value=1.1e-06 Score=60.43 Aligned_cols=98 Identities=13% Similarity=0.070 Sum_probs=65.4
Q ss_pred eEEEeec-hhHHhhhcCCCCeEEEecc--c-cCC--CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCC------CCC
Q 043665 13 KCIVLIC-LLWWIIWWGTNNLEFFLEF--E-AIP--PANVVLLKWILHDWSDEESLRYLKKKCEESIPSND------EGR 80 (132)
Q Consensus 13 ~~~v~Dl-p~v~~~a~~~~ri~~~~~~--~-~~P--~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g------~~~ 80 (132)
+++.+|. |..++. ..+....+. + ..| .+|++++.++||..+| ...+|+ ++++.|+||| +..
T Consensus 46 ~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d--~~~~l~-~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 46 EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD--PEEFLK-ELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH--HHHHHH-HHHHCEEEEEEEEEEEEBT
T ss_pred EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc--HHHHHH-HHHHhcCCCCEEEEEEcCC
Confidence 7888887 445544 222222221 1 222 4999999999999996 789999 9999999999 111
Q ss_pred ---cchhhhhhhhhhc--CCCccCCHHHHHHHHHhCCCeeeE
Q 043665 81 ---KTQLCFDLLMATF--LNGKEGSVYDWKKLFLAAGFSHYK 117 (132)
Q Consensus 81 ---~~~~~~dl~m~~~--~~g~~rt~~e~~~ll~~aGf~~~~ 117 (132)
.........+... .....+|.++|+++++++||++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 119 DDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp TSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred cchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 1111222222221 335679999999999999999875
No 27
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.34 E-value=7.9e-06 Score=59.83 Aligned_cols=118 Identities=13% Similarity=0.032 Sum_probs=78.8
Q ss_pred HHHHHHCCCCeEEEeec-hhHHhhhcC-------CCCeEEEe-ccccCC-CceEEEehhhhcCCChHHHHHHHHHHhhhh
Q 043665 3 RAIATAFPDIKCIVLIC-LLWWIIWWG-------TNNLEFFL-EFEAIP-PANVVLLKWILHDWSDEESLRYLKKKCEES 72 (132)
Q Consensus 3 ~~l~~~~P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~-~~~~~P-~~D~~ll~~vlh~~~de~~~~iL~~~~~~a 72 (132)
..+++.. .+++.+|+ +..++.+++ .+++++.. -++... .+|+++...++|.|+++....+++ ++...
T Consensus 79 ~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~-~l~~~ 155 (230)
T PRK07580 79 IPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHYPQEDAARMLA-HLASL 155 (230)
T ss_pred HHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcCCHHHHHHHHH-HHHhh
Confidence 3455554 45899998 777787765 24788877 433323 499999999999999999999999 99887
Q ss_pred CCCCC-----CCCcchhhhhhhhhhc------CCCccCCHHHHHHHHHhCCCeeeEEEecCC
Q 043665 73 IPSND-----EGRKTQLCFDLLMATF------LNGKEGSVYDWKKLFLAAGFSHYKITPNLG 123 (132)
Q Consensus 73 l~~~g-----~~~~~~~~~dl~m~~~------~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 123 (132)
+++++ +.......+....-.. ......+.++|.++++++||++.++.+...
T Consensus 156 ~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 217 (230)
T PRK07580 156 TRGSLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERISS 217 (230)
T ss_pred cCCeEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeeccc
Confidence 65443 1111111111110000 123446889999999999999999877643
No 28
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.34 E-value=2.2e-06 Score=65.02 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=60.2
Q ss_pred HHHHHHHCC-----CCeEEEeec-hhHHhhhcCC---------------------------------CCeEEEe--cccc
Q 043665 2 ARAIATAFP-----DIKCIVLIC-LLWWIIWWGT---------------------------------NNLEFFL--EFEA 40 (132)
Q Consensus 2 ~~~l~~~~P-----~l~~~v~Dl-p~v~~~a~~~---------------------------------~ri~~~~--~~~~ 40 (132)
++.+++.+| +.+++..|+ |.+++.|++. ++|+|.. +.++
T Consensus 118 A~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~ 197 (264)
T smart00138 118 AMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAE 197 (264)
T ss_pred HHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCC
Confidence 445666655 578999998 7788888751 3677776 5553
Q ss_pred -CC--CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCC
Q 043665 41 -IP--PANVVLLKWILHDWSDEESLRYLKKKCEESIPSND 77 (132)
Q Consensus 41 -~P--~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g 77 (132)
.| .+|+|+++++||+++++...++++ +++++|+|||
T Consensus 198 ~~~~~~fD~I~crnvl~yf~~~~~~~~l~-~l~~~L~pGG 236 (264)
T smart00138 198 SPPLGDFDLIFCRNVLIYFDEPTQRKLLN-RFAEALKPGG 236 (264)
T ss_pred CCccCCCCEEEechhHHhCCHHHHHHHHH-HHHHHhCCCe
Confidence 33 399999999999999999999999 9999999999
No 29
>PLN03075 nicotianamine synthase; Provisional
Probab=98.29 E-value=2.9e-06 Score=65.37 Aligned_cols=70 Identities=11% Similarity=0.113 Sum_probs=58.9
Q ss_pred HHHCCCCeEEEeec-hhHHhhhcC--------CCCeEEEe--cccc---CCCceEEEehhhhcCCChHHHHHHHHHHhhh
Q 043665 6 ATAFPDIKCIVLIC-LLWWIIWWG--------TNNLEFFL--EFEA---IPPANVVLLKWILHDWSDEESLRYLKKKCEE 71 (132)
Q Consensus 6 ~~~~P~l~~~v~Dl-p~v~~~a~~--------~~ri~~~~--~~~~---~P~~D~~ll~~vlh~~~de~~~~iL~~~~~~ 71 (132)
++.+|+.+++.+|. |..++.|++ .+||+|.. ..+. ..++|+|++. +||+|+.++-.++|+ ++++
T Consensus 144 a~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~-~l~~ 221 (296)
T PLN03075 144 KHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIE-HLGK 221 (296)
T ss_pred HhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHHH-HHHH
Confidence 35689999999998 778877765 46899997 4442 2359999999 999999888999999 9999
Q ss_pred hCCCCC
Q 043665 72 SIPSND 77 (132)
Q Consensus 72 al~~~g 77 (132)
.|+|||
T Consensus 222 ~LkPGG 227 (296)
T PLN03075 222 HMAPGA 227 (296)
T ss_pred hcCCCc
Confidence 999998
No 30
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.27 E-value=1.5e-05 Score=61.93 Aligned_cols=113 Identities=15% Similarity=0.087 Sum_probs=73.8
Q ss_pred HHHHHHCCCCeEEEeec-hhHHhhhc-------CCCCeEEEe-ccccCC---CceEEEehhhhcCCChHHHHHHHHHHhh
Q 043665 3 RAIATAFPDIKCIVLIC-LLWWIIWW-------GTNNLEFFL-EFEAIP---PANVVLLKWILHDWSDEESLRYLKKKCE 70 (132)
Q Consensus 3 ~~l~~~~P~l~~~v~Dl-p~v~~~a~-------~~~ri~~~~-~~~~~P---~~D~~ll~~vlh~~~de~~~~iL~~~~~ 70 (132)
..++...++ +++.+|. +..+..++ ...++.+.. -++.+| .+|+++...+||++++. ...|+ +++
T Consensus 137 ~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL~H~~dp--~~~L~-el~ 212 (314)
T TIGR00452 137 WRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLYHRKSP--LEHLK-QLK 212 (314)
T ss_pred HHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchhhccCCH--HHHHH-HHH
Confidence 455666664 6899997 43444322 145777776 333332 59999999999999764 57899 999
Q ss_pred hhCCCCCC---------CCcchhh--hh--hhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEec
Q 043665 71 ESIPSNDE---------GRKTQLC--FD--LLMATFLNGKEGSVYDWKKLFLAAGFSHYKITPN 121 (132)
Q Consensus 71 ~al~~~g~---------~~~~~~~--~d--l~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 121 (132)
++|+|||. ....... .+ -.|.. .-...|.+++.++|+++||+.+++...
T Consensus 213 r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~n--v~flpS~~~L~~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 213 HQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKN--VYFIPSVSALKNWLEKVGFENFRILDV 274 (314)
T ss_pred HhcCCCCEEEEEEEEecCccccccCchHHHHhccc--cccCCCHHHHHHHHHHCCCeEEEEEec
Confidence 99999991 1111100 00 01110 112368999999999999999987654
No 31
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.27 E-value=1.3e-05 Score=62.48 Aligned_cols=107 Identities=8% Similarity=-0.055 Sum_probs=74.7
Q ss_pred CCCeEEEeec-hhHHhhhcC-------CCCeEEEe-ccccC--C--CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCC
Q 043665 10 PDIKCIVLIC-LLWWIIWWG-------TNNLEFFL-EFEAI--P--PANVVLLKWILHDWSDEESLRYLKKKCEESIPSN 76 (132)
Q Consensus 10 P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~-~~~~~--P--~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~ 76 (132)
++.+++.+|. +..++.++. ..+|++.. -.+.+ + .+|++++..+||+++|. ..+|+ .+++.|+||
T Consensus 152 ~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~d~--~~~L~-~l~r~LkPG 228 (322)
T PLN02396 152 MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVANP--AEFCK-SLSALTIPN 228 (322)
T ss_pred cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhcCCH--HHHHH-HHHHHcCCC
Confidence 5788999998 678887764 24788877 33332 2 39999999999999886 47999 999999999
Q ss_pred CC-------CCcchh---hhhhh--h-hhcCC----CccCCHHHHHHHHHhCCCeeeEEE
Q 043665 77 DE-------GRKTQL---CFDLL--M-ATFLN----GKEGSVYDWKKLFLAAGFSHYKIT 119 (132)
Q Consensus 77 g~-------~~~~~~---~~dl~--m-~~~~~----g~~rt~~e~~~ll~~aGf~~~~~~ 119 (132)
|- ...... ..... + ++-.+ .+.+|.+|+.++++++||++.++.
T Consensus 229 G~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 229 GATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred cEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 91 111111 11111 1 11112 235799999999999999998874
No 32
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.25 E-value=9.9e-06 Score=63.03 Aligned_cols=126 Identities=13% Similarity=0.066 Sum_probs=77.6
Q ss_pred HHHHHHCCCCeEEEeec-hhHHhhhcC----C-------CCeEEEe-ccccCC-CceEEEehhhhcCCChHHHHHHHHHH
Q 043665 3 RAIATAFPDIKCIVLIC-LLWWIIWWG----T-------NNLEFFL-EFEAIP-PANVVLLKWILHDWSDEESLRYLKKK 68 (132)
Q Consensus 3 ~~l~~~~P~l~~~v~Dl-p~v~~~a~~----~-------~ri~~~~-~~~~~P-~~D~~ll~~vlh~~~de~~~~iL~~~ 68 (132)
..++++ +.+++.+|+ |.+++.+++ . .+++|.. -++.++ .+|++++..++|+++++....+++ +
T Consensus 160 ~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL~H~p~~~~~~ll~-~ 236 (315)
T PLN02585 160 IPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVLIHYPQDKADGMIA-H 236 (315)
T ss_pred HHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEEEecCHHHHHHHHH-H
Confidence 345543 578999998 668877765 1 2456655 223334 499999999999999988888888 8
Q ss_pred hhhhCCCCC---CCCcchhhhhhhhhh--cCCC-------ccCCHHHHHHHHHhCCCeeeEEEecCCc---ceEEEEEC
Q 043665 69 CEESIPSND---EGRKTQLCFDLLMAT--FLNG-------KEGSVYDWKKLFLAAGFSHYKITPNLGL---WSLIEAYP 132 (132)
Q Consensus 69 ~~~al~~~g---~~~~~~~~~dl~m~~--~~~g-------~~rt~~e~~~ll~~aGf~~~~~~~~~~~---~~~ie~~p 132 (132)
+.. +.+++ ........+++.-.. ...| ...+.+|++++++++||++....-.... .-+.|++|
T Consensus 237 l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~~~~~~~y~~~l~~~~~ 314 (315)
T PLN02585 237 LAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARREMTATQFYFSRLLEAVP 314 (315)
T ss_pred HHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEEEeecceeHHhhhhhcc
Confidence 875 45554 111111112211000 0112 2348999999999999998765544332 35666654
No 33
>PRK06202 hypothetical protein; Provisional
Probab=98.23 E-value=1.4e-05 Score=59.10 Aligned_cols=112 Identities=14% Similarity=0.026 Sum_probs=75.4
Q ss_pred HCCCCeEEEeec-hhHHhhhcC---CCCeEEEe----ccccCC-CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCC-
Q 043665 8 AFPDIKCIVLIC-LLWWIIWWG---TNNLEFFL----EFEAIP-PANVVLLKWILHDWSDEESLRYLKKKCEESIPSND- 77 (132)
Q Consensus 8 ~~P~l~~~v~Dl-p~v~~~a~~---~~ri~~~~----~~~~~P-~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g- 77 (132)
..|+.+++.+|+ |.+++.+++ ..++++.. .+...+ .+|+++++.+||+++|++...+|+ ++++.++ ++
T Consensus 85 ~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~-~~~r~~~-~~~ 162 (232)
T PRK06202 85 DGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLHHLDDAEVVRLLA-DSAALAR-RLV 162 (232)
T ss_pred CCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeeecCChHHHHHHHH-HHHHhcC-eeE
Confidence 357789999999 889888876 23455544 121223 399999999999999998889999 9999887 33
Q ss_pred ---C--CCcch-hhhhhhhhh-------cCCC-----ccCCHHHHHHHHHhCCCeeeEEEecC
Q 043665 78 ---E--GRKTQ-LCFDLLMAT-------FLNG-----KEGSVYDWKKLFLAAGFSHYKITPNL 122 (132)
Q Consensus 78 ---~--~~~~~-~~~dl~m~~-------~~~g-----~~rt~~e~~~ll~~aGf~~~~~~~~~ 122 (132)
+ .+... ..+-..+.. ..++ +-+|.+|+.+++++ ||++....+..
T Consensus 163 ~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf~~~~~~~~~ 224 (232)
T PRK06202 163 LHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GWRVERQWPFR 224 (232)
T ss_pred EEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CCeEEecccee
Confidence 1 11111 111111110 0111 34789999999999 99998887653
No 34
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.19 E-value=2.4e-05 Score=56.70 Aligned_cols=108 Identities=7% Similarity=-0.070 Sum_probs=73.3
Q ss_pred HHHHHHCCCCeEEEeec-hhHHhhhcC------CCCeEEEe--ccc-cCC-CceEEEehhhhcCCChHHHHHHHHHHhhh
Q 043665 3 RAIATAFPDIKCIVLIC-LLWWIIWWG------TNNLEFFL--EFE-AIP-PANVVLLKWILHDWSDEESLRYLKKKCEE 71 (132)
Q Consensus 3 ~~l~~~~P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~-~~P-~~D~~ll~~vlh~~~de~~~~iL~~~~~~ 71 (132)
..++++ +.+++.+|+ |..++.+++ ..++++.. +.+ +++ .+|+++...++|.+++++...+++ ++++
T Consensus 46 ~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~~~~~~~~~~l~-~i~~ 122 (197)
T PRK11207 46 LYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFILSTVVLMFLEAKTIPGLIA-NMQR 122 (197)
T ss_pred HHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEEEEecchhhCCHHHHHHHHH-HHHH
Confidence 445553 568999999 777777764 23466655 443 344 499999999999999999999999 9999
Q ss_pred hCCCCCCC--CcchhhhhhhhhhcCC--CccCCHHHHHHHHHhCCCeeeEE
Q 043665 72 SIPSNDEG--RKTQLCFDLLMATFLN--GKEGSVYDWKKLFLAAGFSHYKI 118 (132)
Q Consensus 72 al~~~g~~--~~~~~~~dl~m~~~~~--g~~rt~~e~~~ll~~aGf~~~~~ 118 (132)
+|+|||-. -.....-+.. ... ....+.+|+.++++ ||++...
T Consensus 123 ~LkpgG~~~~~~~~~~~~~~---~~~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 123 CTKPGGYNLIVAAMDTADYP---CTVGFPFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred HcCCCcEEEEEEEecCCCCC---CCCCCCCccCHHHHHHHhC--CCeEEEe
Confidence 99999920 0000000000 011 13368899999998 9998765
No 35
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.18 E-value=2.3e-05 Score=57.23 Aligned_cols=113 Identities=14% Similarity=0.087 Sum_probs=77.3
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC--CCCeEEEe--ccc-cCC--CceEEEehhhhcCCChHHHHHHHHHHhhhhC
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG--TNNLEFFL--EFE-AIP--PANVVLLKWILHDWSDEESLRYLKKKCEESI 73 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~--~~ri~~~~--~~~-~~P--~~D~~ll~~vlh~~~de~~~~iL~~~~~~al 73 (132)
+..+++.+|+.+++.+|. |..++.++. .++++++. +.+ +.+ .+|+++..+++|..+| -..+|+ ++++.|
T Consensus 49 ~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~--~~~~l~-~~~~~L 125 (240)
T TIGR02072 49 TRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD--LSQALS-ELARVL 125 (240)
T ss_pred HHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC--HHHHHH-HHHHHc
Confidence 456788899999999998 556666655 45777776 433 333 3999999999998766 467899 999999
Q ss_pred CCCCC----CCcchhhhhhhhhhc-CCCccCCHHHHHHHHHhCCCeeeEE
Q 043665 74 PSNDE----GRKTQLCFDLLMATF-LNGKEGSVYDWKKLFLAAGFSHYKI 118 (132)
Q Consensus 74 ~~~g~----~~~~~~~~dl~m~~~-~~g~~rt~~e~~~ll~~aGf~~~~~ 118 (132)
+|||- .........+..... .+...++.++|.++++++ |+...+
T Consensus 126 ~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~ 174 (240)
T TIGR02072 126 KPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTL 174 (240)
T ss_pred CCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEE
Confidence 99991 111111111111111 344567899999999998 886554
No 36
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.12 E-value=6.3e-05 Score=55.04 Aligned_cols=117 Identities=11% Similarity=0.006 Sum_probs=77.7
Q ss_pred HHHHHHCCCCeEEEeec-hhHHhhhcC-------CCCeEEEe--ccccCCCceEEEehhhhcCCChHHHHHHHHHHhhhh
Q 043665 3 RAIATAFPDIKCIVLIC-LLWWIIWWG-------TNNLEFFL--EFEAIPPANVVLLKWILHDWSDEESLRYLKKKCEES 72 (132)
Q Consensus 3 ~~l~~~~P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~--~~~~~P~~D~~ll~~vlh~~~de~~~~iL~~~~~~a 72 (132)
..+++. +.+++.+|. |..++.+++ .+++++.. +.+....+|++++..++|.++++....+++ ++...
T Consensus 71 ~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~-~i~~~ 147 (219)
T TIGR02021 71 IELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALG-HLASL 147 (219)
T ss_pred HHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHH-HHHHH
Confidence 344443 458899998 778887765 24788877 333224599999999999999888888999 99888
Q ss_pred CCCCC--C-CCcchhhhhhhhhh-cC-------CCccCCHHHHHHHHHhCCCeeeEEEecC
Q 043665 73 IPSND--E-GRKTQLCFDLLMAT-FL-------NGKEGSVYDWKKLFLAAGFSHYKITPNL 122 (132)
Q Consensus 73 l~~~g--~-~~~~~~~~dl~m~~-~~-------~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 122 (132)
+++++ . .+..........+. .. +-..++.+++.++++++||++.......
T Consensus 148 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 148 TKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVS 208 (219)
T ss_pred hCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeeccc
Confidence 87655 1 11111000011110 11 1234689999999999999998876543
No 37
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.10 E-value=8.2e-05 Score=54.52 Aligned_cols=129 Identities=12% Similarity=-0.065 Sum_probs=91.1
Q ss_pred HHHHHHHCCCCeEEEeechhHH-hhhc----C--CCCeE---EEeccc---cC-------C-CceEEEehhhhcCCChHH
Q 043665 2 ARAIATAFPDIKCIVLICLLWW-IIWW----G--TNNLE---FFLEFE---AI-------P-PANVVLLKWILHDWSDEE 60 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dlp~v~-~~a~----~--~~ri~---~~~~~~---~~-------P-~~D~~ll~~vlh~~~de~ 60 (132)
+..+++.+|+++..==|..... .... + .+++. .....+ ++ + .+|+++..|++|--+-+.
T Consensus 40 a~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~ 119 (204)
T PF06080_consen 40 AVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSA 119 (204)
T ss_pred HHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceeeehhHHHhcCHHH
Confidence 3467889999987766764333 2222 1 22221 000111 11 2 389999999999999999
Q ss_pred HHHHHHHHhhhhCCCCC------C-------CCcchhhhhhhhhhc-CCCccCCHHHHHHHHHhCCCeeeEEEecCCcce
Q 043665 61 SLRYLKKKCEESIPSND------E-------GRKTQLCFDLLMATF-LNGKEGSVYDWKKLFLAAGFSHYKITPNLGLWS 126 (132)
Q Consensus 61 ~~~iL~~~~~~al~~~g------~-------~~~~~~~~dl~m~~~-~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~ 126 (132)
+..+++ .+.+.|++|| | .++....||..+-.. .....|..+++.++.+++||+..++..++-+--
T Consensus 120 ~~~lf~-~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l~~~~~MPANN~ 198 (204)
T PF06080_consen 120 VEGLFA-GAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLELEEDIDMPANNL 198 (204)
T ss_pred HHHHHH-HHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCccCcccccCCCCe
Confidence 999999 9999999999 2 133456788776654 468889999999999999999999988876544
Q ss_pred EEEEE
Q 043665 127 LIEAY 131 (132)
Q Consensus 127 ~ie~~ 131 (132)
++.++
T Consensus 199 ~Lvfr 203 (204)
T PF06080_consen 199 LLVFR 203 (204)
T ss_pred EEEEe
Confidence 44443
No 38
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.09 E-value=7.2e-06 Score=52.91 Aligned_cols=74 Identities=19% Similarity=0.185 Sum_probs=56.5
Q ss_pred HHHHHHC---CCCeEEEeec-hhHHhhhcC-----CCCeEEEe--ccc-cC--CCceEEEeh-hhhcCCChHHHHHHHHH
Q 043665 3 RAIATAF---PDIKCIVLIC-LLWWIIWWG-----TNNLEFFL--EFE-AI--PPANVVLLK-WILHDWSDEESLRYLKK 67 (132)
Q Consensus 3 ~~l~~~~---P~l~~~v~Dl-p~v~~~a~~-----~~ri~~~~--~~~-~~--P~~D~~ll~-~vlh~~~de~~~~iL~~ 67 (132)
..+++.+ |+.+.+.+|+ |..++.+++ .-+++++. +.+ ++ ..+|+|++. .++|.+++++..++++
T Consensus 13 ~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~- 91 (101)
T PF13649_consen 13 RALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHHLSPEELEALLR- 91 (101)
T ss_dssp HHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHH-
T ss_pred HHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHHHH-
Confidence 4555555 7799999998 778888876 24778877 443 22 249999994 5599999999999999
Q ss_pred HhhhhCCCCC
Q 043665 68 KCEESIPSND 77 (132)
Q Consensus 68 ~~~~al~~~g 77 (132)
++++.++|||
T Consensus 92 ~~~~~l~pgG 101 (101)
T PF13649_consen 92 RIARLLRPGG 101 (101)
T ss_dssp HHHHTEEEEE
T ss_pred HHHHHhCCCC
Confidence 9999999986
No 39
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.08 E-value=0.0001 Score=56.88 Aligned_cols=75 Identities=9% Similarity=0.081 Sum_probs=55.7
Q ss_pred HHHHHHHCC-CCeEEEeec-hhHHhhhcC-----CC--CeEEEe--cccc--CCC------ceEEEehhhhcCCChHHHH
Q 043665 2 ARAIATAFP-DIKCIVLIC-LLWWIIWWG-----TN--NLEFFL--EFEA--IPP------ANVVLLKWILHDWSDEESL 62 (132)
Q Consensus 2 ~~~l~~~~P-~l~~~v~Dl-p~v~~~a~~-----~~--ri~~~~--~~~~--~P~------~D~~ll~~vlh~~~de~~~ 62 (132)
+..|+++.+ ..+++.+|+ +.+++.+.+ .. +|.++. |++. ++. ..++++...+|+++++++.
T Consensus 78 t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~ 157 (301)
T TIGR03438 78 TRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAV 157 (301)
T ss_pred HHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHH
Confidence 346777777 689999999 556666654 23 355444 6652 332 3467778999999999999
Q ss_pred HHHHHHhhhhCCCCC
Q 043665 63 RYLKKKCEESIPSND 77 (132)
Q Consensus 63 ~iL~~~~~~al~~~g 77 (132)
.+|+ +++++|+|||
T Consensus 158 ~~L~-~i~~~L~pgG 171 (301)
T TIGR03438 158 AFLR-RIRQLLGPGG 171 (301)
T ss_pred HHHH-HHHHhcCCCC
Confidence 9999 9999999999
No 40
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.08 E-value=1.3e-05 Score=50.14 Aligned_cols=70 Identities=14% Similarity=0.076 Sum_probs=54.7
Q ss_pred HHHHHCCCCeEEEeec-hhHHhhhcC---CCCeEEEe--ccc-cCC-C-ceEEEehhhhcCCChHHHHHHHHHHhhhhCC
Q 043665 4 AIATAFPDIKCIVLIC-LLWWIIWWG---TNNLEFFL--EFE-AIP-P-ANVVLLKWILHDWSDEESLRYLKKKCEESIP 74 (132)
Q Consensus 4 ~l~~~~P~l~~~v~Dl-p~v~~~a~~---~~ri~~~~--~~~-~~P-~-~D~~ll~~vlh~~~de~~~~iL~~~~~~al~ 74 (132)
.+++ +|..+++.+|. +..++.+++ ..+++++. +.+ ++| + +|++++.+++|.+ ++..++++ ++++.|+
T Consensus 13 ~l~~-~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~~~l~-e~~rvLk 88 (95)
T PF08241_consen 13 ALAK-RGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPEAALR-EIYRVLK 88 (95)
T ss_dssp HHHH-TTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHHHHHH-HHHHHEE
T ss_pred HHHh-ccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHHHHHH-HHHHHcC
Confidence 3444 49999999998 556777776 55666666 444 566 3 9999999999999 55789999 9999999
Q ss_pred CCC
Q 043665 75 SND 77 (132)
Q Consensus 75 ~~g 77 (132)
|||
T Consensus 89 ~gG 91 (95)
T PF08241_consen 89 PGG 91 (95)
T ss_dssp EEE
T ss_pred cCe
Confidence 987
No 41
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.08 E-value=7.7e-05 Score=55.78 Aligned_cols=111 Identities=6% Similarity=-0.008 Sum_probs=77.0
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC-CCCeEEEe--ccccCC--CceEEEehhhhcCCChHHHHHHHHHHhhhhCCC
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG-TNNLEFFL--EFEAIP--PANVVLLKWILHDWSDEESLRYLKKKCEESIPS 75 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-~~ri~~~~--~~~~~P--~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~ 75 (132)
+..+++.+|+.+++.+|. |..++.+++ ..+++++. +.+..+ .+|+++.+.++|..+|. .++|+ +++++|+|
T Consensus 46 ~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~d~--~~~l~-~~~~~Lkp 122 (258)
T PRK01683 46 TELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIFANASLQWLPDH--LELFP-RLVSLLAP 122 (258)
T ss_pred HHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEEEccChhhCCCH--HHHHH-HHHHhcCC
Confidence 457888899999999999 778888876 56777776 433222 59999999999987764 57999 99999999
Q ss_pred CC------CCCcchhhhh----h--------hhhhc--CCCccCCHHHHHHHHHhCCCee
Q 043665 76 ND------EGRKTQLCFD----L--------LMATF--LNGKEGSVYDWKKLFLAAGFSH 115 (132)
Q Consensus 76 ~g------~~~~~~~~~d----l--------~m~~~--~~g~~rt~~e~~~ll~~aGf~~ 115 (132)
|| +......... + .+... ..+...+..++.+++.++|+.+
T Consensus 123 gG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v 182 (258)
T PRK01683 123 GGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALAPAACRV 182 (258)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHHhCCCce
Confidence 99 1111000111 0 00000 1134467889999999999875
No 42
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.08 E-value=4e-05 Score=57.96 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=78.9
Q ss_pred HHHHHHCCC------CeEEEeec-hhHHhhhcC---------CCCeEEEe-ccc--cCCC--ceEEEehhhhcCCChHHH
Q 043665 3 RAIATAFPD------IKCIVLIC-LLWWIIWWG---------TNNLEFFL-EFE--AIPP--ANVVLLKWILHDWSDEES 61 (132)
Q Consensus 3 ~~l~~~~P~------l~~~v~Dl-p~v~~~a~~---------~~ri~~~~-~~~--~~P~--~D~~ll~~vlh~~~de~~ 61 (132)
-.+++.-+. -++++.|. |+.+..+.+ ..|+.++. --+ |+|. +|.|.+.-=+.+|+| .
T Consensus 116 Fril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th--~ 193 (296)
T KOG1540|consen 116 FRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTH--I 193 (296)
T ss_pred HHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCC--H
Confidence 345555555 68999998 889988765 34688888 333 5663 999999999999999 5
Q ss_pred HHHHHHHhhhhCCCCC-----C-----CCcc-----hhhhhh---------------hhhhcCCCccCCHHHHHHHHHhC
Q 043665 62 LRYLKKKCEESIPSND-----E-----GRKT-----QLCFDL---------------LMATFLNGKEGSVYDWKKLFLAA 111 (132)
Q Consensus 62 ~~iL~~~~~~al~~~g-----~-----~~~~-----~~~~dl---------------~m~~~~~g~~rt~~e~~~ll~~a 111 (132)
.+.|+ .+++.|+||| + .+.. +..+|. ..|+..=-+-.+.+|+..+.++|
T Consensus 194 ~k~l~-EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~mieda 272 (296)
T KOG1540|consen 194 QKALR-EAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDA 272 (296)
T ss_pred HHHHH-HHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHc
Confidence 78999 9999999999 1 1111 112221 12221112346778999999999
Q ss_pred CCeeeE
Q 043665 112 GFSHYK 117 (132)
Q Consensus 112 Gf~~~~ 117 (132)
||..+.
T Consensus 273 GF~~~~ 278 (296)
T KOG1540|consen 273 GFSSVN 278 (296)
T ss_pred CCcccc
Confidence 999886
No 43
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.05 E-value=4.2e-05 Score=58.40 Aligned_cols=119 Identities=10% Similarity=0.035 Sum_probs=79.1
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC-------CCCeEEEe-ccccCC-CceEEEehhhhcCCChHHHHHHHHHHhhh
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG-------TNNLEFFL-EFEAIP-PANVVLLKWILHDWSDEESLRYLKKKCEE 71 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~-~~~~~P-~~D~~ll~~vlh~~~de~~~~iL~~~~~~ 71 (132)
+..++++| +++++.+.+ +.-.+.+++ .+++++.- =+..++ .+|.|+.-..+...+.+.-..+++ ++.+
T Consensus 77 ~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi~~~Ehvg~~~~~~~f~-~~~~ 154 (273)
T PF02353_consen 77 AIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSIEMFEHVGRKNYPAFFR-KISR 154 (273)
T ss_dssp HHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEESEGGGTCGGGHHHHHH-HHHH
T ss_pred HHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEEechhhcChhHHHHHHH-HHHH
Confidence 56788888 899999998 445555443 57888877 333444 699999999999999888899999 9999
Q ss_pred hCCCCC---------CCCcchh----hhhh-hhhhcCCCccCCHHHHHHHHHhCCCeeeEEEecC
Q 043665 72 SIPSND---------EGRKTQL----CFDL-LMATFLNGKEGSVYDWKKLFLAAGFSHYKITPNL 122 (132)
Q Consensus 72 al~~~g---------~~~~~~~----~~dl-~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 122 (132)
.|+||| ..+.... ..+. .-....||...|.+++...++++||++..+...+
T Consensus 155 ~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 155 LLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLEVEDVENLG 219 (273)
T ss_dssp HSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-EEEEEEE-H
T ss_pred hcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEEEEEEEEcC
Confidence 999999 1111000 1121 1122368899999999999999999999887653
No 44
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.02 E-value=0.00022 Score=54.92 Aligned_cols=127 Identities=15% Similarity=0.143 Sum_probs=86.0
Q ss_pred HHHHHCCC--CeEEEeec-hhHHhhhcC-------CCCeEEEe--cccc------CCCceEEEehhhhcCCChHHHHH-H
Q 043665 4 AIATAFPD--IKCIVLIC-LLWWIIWWG-------TNNLEFFL--EFEA------IPPANVVLLKWILHDWSDEESLR-Y 64 (132)
Q Consensus 4 ~l~~~~P~--l~~~v~Dl-p~v~~~a~~-------~~ri~~~~--~~~~------~P~~D~~ll~~vlh~~~de~~~~-i 64 (132)
..++++|. .++.+.|. |.-++.+++ .+-++|.. .|+. .|..++++.+-+.-.|+|.+.++ .
T Consensus 152 Dal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~s 231 (311)
T PF12147_consen 152 DALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRS 231 (311)
T ss_pred HHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHH
Confidence 45677887 78999998 667777665 44558887 6652 35579999999999999977554 7
Q ss_pred HHHHhhhhCCCCC-----CCCc-chhhhhhhhhhcC-CC-----ccCCHHHHHHHHHhCCCeeeE-EEecCCcceEEEEE
Q 043665 65 LKKKCEESIPSND-----EGRK-TQLCFDLLMATFL-NG-----KEGSVYDWKKLFLAAGFSHYK-ITPNLGLWSLIEAY 131 (132)
Q Consensus 65 L~~~~~~al~~~g-----~~~~-~~~~~dl~m~~~~-~g-----~~rt~~e~~~ll~~aGf~~~~-~~~~~~~~~~ie~~ 131 (132)
|+ .++.++.||| ..|. .+..+=...+++. +| +.||.+|+.+|+++|||+..+ ...--|..+|--|+
T Consensus 232 l~-gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~~q~ID~~GIFTVSlA~ 310 (311)
T PF12147_consen 232 LA-GLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKIDQRIDEWGIFTVSLAR 310 (311)
T ss_pred HH-HHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchhhheeccCCceEEEeec
Confidence 99 9999999999 2222 1221111122222 33 359999999999999999543 23333555555444
No 45
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.99 E-value=8.6e-06 Score=56.34 Aligned_cols=106 Identities=17% Similarity=0.188 Sum_probs=74.5
Q ss_pred HHHHH-HHCCCCeEEEeec-hhHHhhhcC------CCCeEEEe--ccc-c--CC-CceEEEehhhhcCCChHHHHHHHHH
Q 043665 2 ARAIA-TAFPDIKCIVLIC-LLWWIIWWG------TNNLEFFL--EFE-A--IP-PANVVLLKWILHDWSDEESLRYLKK 67 (132)
Q Consensus 2 ~~~l~-~~~P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~-~--~P-~~D~~ll~~vlh~~~de~~~~iL~~ 67 (132)
+..++ +.+|..+++.+|+ |..++.++. .++++|.. +++ + ++ .+|+++...++|++++. ..+|+
T Consensus 18 ~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~l~~~~~~--~~~l~- 94 (152)
T PF13847_consen 18 LIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGVLHHFPDP--EKVLK- 94 (152)
T ss_dssp HHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEESTGGGTSHH--HHHHH-
T ss_pred HHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCchhhccCH--HHHHH-
Confidence 34566 5589999999998 788888875 45899998 666 3 33 59999999999999985 48899
Q ss_pred HhhhhCCCCCC-----CC---c-ch---hhhhhhh--hhc-CCCccCCHHHHHHHHHhCC
Q 043665 68 KCEESIPSNDE-----GR---K-TQ---LCFDLLM--ATF-LNGKEGSVYDWKKLFLAAG 112 (132)
Q Consensus 68 ~~~~al~~~g~-----~~---~-~~---~~~dl~m--~~~-~~g~~rt~~e~~~ll~~aG 112 (132)
++.+.|+++|- .. + .. ....+.+ +.. ..|. +.++|..+|++||
T Consensus 95 ~~~~~lk~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 95 NIIRLLKPGGILIISDPNHNDELPEQLEELMNLYSEVWSMIYIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp HHHHHEEEEEEEEEEEEEHSHHHHHHHHHHHHHHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred HHHHHcCCCcEEEEEECChHHHHHHHHHHHHHHHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence 99999999991 11 0 00 0111111 111 1222 8889999999998
No 46
>PRK06922 hypothetical protein; Provisional
Probab=97.98 E-value=2.8e-05 Score=65.58 Aligned_cols=75 Identities=11% Similarity=0.038 Sum_probs=59.1
Q ss_pred HHHHHHHCCCCeEEEeech-hHHhhhcC-----CCCeEEEe--ccc-c--CC--CceEEEehhhhcCC-----------C
Q 043665 2 ARAIATAFPDIKCIVLICL-LWWIIWWG-----TNNLEFFL--EFE-A--IP--PANVVLLKWILHDW-----------S 57 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dlp-~v~~~a~~-----~~ri~~~~--~~~-~--~P--~~D~~ll~~vlh~~-----------~ 57 (132)
+..+++++|+.+++++|+. .+++.+++ ..+++++. ..+ + ++ .+|+|+++.++|+| +
T Consensus 433 s~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~ 512 (677)
T PRK06922 433 LDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFN 512 (677)
T ss_pred HHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhccccccccc
Confidence 4577888999999999994 56877764 24566665 333 2 33 39999999999976 4
Q ss_pred hHHHHHHHHHHhhhhCCCCC
Q 043665 58 DEESLRYLKKKCEESIPSND 77 (132)
Q Consensus 58 de~~~~iL~~~~~~al~~~g 77 (132)
+++..++|+ +++++|+|||
T Consensus 513 ~edl~kiLr-eI~RVLKPGG 531 (677)
T PRK06922 513 HEVIKKGLQ-SAYEVLKPGG 531 (677)
T ss_pred HHHHHHHHH-HHHHHcCCCc
Confidence 678899999 9999999999
No 47
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.92 E-value=0.00024 Score=50.43 Aligned_cols=115 Identities=11% Similarity=0.015 Sum_probs=77.6
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC-----CCCeEEEe--ccccCC-CceEEEehhhhcCCChHH------------
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG-----TNNLEFFL--EFEAIP-PANVVLLKWILHDWSDEE------------ 60 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-----~~ri~~~~--~~~~~P-~~D~~ll~~vlh~~~de~------------ 60 (132)
+..+++..+ +++.+|+ |..++.+++ .-+++++. .++..+ .+|++++....|..+++.
T Consensus 34 ~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~ 111 (179)
T TIGR00537 34 AIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDG 111 (179)
T ss_pred HHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCcchhcccchhhhhhhc
Confidence 345666665 8999998 778887765 23566665 555333 599999988777665421
Q ss_pred -------HHHHHHHHhhhhCCCCCCCCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEecCCcceEEEEE
Q 043665 61 -------SLRYLKKKCEESIPSNDEGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITPNLGLWSLIEAY 131 (132)
Q Consensus 61 -------~~~iL~~~~~~al~~~g~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~ie~~ 131 (132)
...+|+ .+.+.|+|||..- ......+...++.++++++||....+...+-..--++++
T Consensus 112 ~~~~~~~~~~~l~-~~~~~Lk~gG~~~------------~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~ 176 (179)
T TIGR00537 112 GKDGRKVIDRFLD-ELPEILKEGGRVQ------------LIQSSLNGEPDTFDKLDERGFRYEIVAERGLFFEELFAI 176 (179)
T ss_pred CCchHHHHHHHHH-hHHHhhCCCCEEE------------EEEeccCChHHHHHHHHhCCCeEEEEEEeecCceEEEEE
Confidence 356788 8889999987200 000111236899999999999999988877665555544
No 48
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.91 E-value=9.5e-05 Score=60.07 Aligned_cols=111 Identities=14% Similarity=0.030 Sum_probs=75.5
Q ss_pred HHHHHHCCCCeEEEeec-hhHHhhhcC----CCCeEEEe--ccc---cCC--CceEEEehhhhcCCChHHHHHHHHHHhh
Q 043665 3 RAIATAFPDIKCIVLIC-LLWWIIWWG----TNNLEFFL--EFE---AIP--PANVVLLKWILHDWSDEESLRYLKKKCE 70 (132)
Q Consensus 3 ~~l~~~~P~l~~~v~Dl-p~v~~~a~~----~~ri~~~~--~~~---~~P--~~D~~ll~~vlh~~~de~~~~iL~~~~~ 70 (132)
..+++.+ -+++.+|. |..++.+.. .++++++. +.+ ++| .+|++++..++|.++|++..++|+ +++
T Consensus 53 ~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~-~~~ 129 (475)
T PLN02336 53 GELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAE-RMV 129 (475)
T ss_pred HHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHH-HHH
Confidence 4455554 36889997 667766543 45788776 432 345 399999999999999999999999 999
Q ss_pred hhCCCCCCC--Ccchh--hhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeE
Q 043665 71 ESIPSNDEG--RKTQL--CFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYK 117 (132)
Q Consensus 71 ~al~~~g~~--~~~~~--~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~ 117 (132)
+.|+|||-. .+... .-|+.-. ......|+..+|.+++.++||....
T Consensus 130 r~Lk~gG~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~~~~~~~~ 179 (475)
T PLN02336 130 KWLKVGGYIFFRESCFHQSGDSKRK-NNPTHYREPRFYTKVFKECHTRDED 179 (475)
T ss_pred HhcCCCeEEEEEeccCCCCCccccc-CCCCeecChHHHHHHHHHheeccCC
Confidence 999999820 00000 0001000 0123457889999999999988653
No 49
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.88 E-value=2.1e-05 Score=57.31 Aligned_cols=101 Identities=10% Similarity=0.037 Sum_probs=64.9
Q ss_pred eEEEeec-hhHHhhhcC----CCCeEEEe--ccccCC--CceEEEehhhhcCCCh-HHHHHHHHHHhhhhCCCCCC----
Q 043665 13 KCIVLIC-LLWWIIWWG----TNNLEFFL--EFEAIP--PANVVLLKWILHDWSD-EESLRYLKKKCEESIPSNDE---- 78 (132)
Q Consensus 13 ~~~v~Dl-p~v~~~a~~----~~ri~~~~--~~~~~P--~~D~~ll~~vlh~~~d-e~~~~iL~~~~~~al~~~g~---- 78 (132)
+.++.|. |..++.+++ .++|+++. +-+..| .+|+++++-|+|++++ ++...+++ ++.++|+|||.
T Consensus 67 ~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~-~l~~~L~pgG~LV~g 145 (201)
T PF05401_consen 67 RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYYLDDAEDLRAALD-RLVAALAPGGHLVFG 145 (201)
T ss_dssp EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGGSSSHHHHHHHHH-HHHHTEEEEEEEEEE
T ss_pred ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHcCCCHHHHHHHHH-HHHHHhCCCCEEEEE
Confidence 5789998 889998886 57899998 444556 3999999999999986 67888999 99999999983
Q ss_pred CCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEec
Q 043665 79 GRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITPN 121 (132)
Q Consensus 79 ~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 121 (132)
......... =|..-..+-..++|++.=-++..+...
T Consensus 146 ~~rd~~c~~-------wgh~~ga~tv~~~~~~~~~~~~~~~~~ 181 (201)
T PF05401_consen 146 HARDANCRR-------WGHAAGAETVLEMLQEHLTEVERVECR 181 (201)
T ss_dssp EE-HHHHHH-------TT-S--HHHHHHHHHHHSEEEEEEEEE
T ss_pred EecCCcccc-------cCcccchHHHHHHHHHHhhheeEEEEc
Confidence 111111111 122234556677777654444444433
No 50
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.83 E-value=0.00016 Score=51.68 Aligned_cols=99 Identities=8% Similarity=0.001 Sum_probs=70.1
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC------CCCeEEEe--ccccCCC-ceEEEehhhhcCCChHHHHHHHHHHhhh
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG------TNNLEFFL--EFEAIPP-ANVVLLKWILHDWSDEESLRYLKKKCEE 71 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~~~P~-~D~~ll~~vlh~~~de~~~~iL~~~~~~ 71 (132)
+..+++++|+.+++.+|. |..++.+++ .++++++. ...++++ +|++++....+++ ..+++ .+.+
T Consensus 46 ~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~~~-----~~~l~-~~~~ 119 (187)
T PRK08287 46 SIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGGNL-----TAIID-WSLA 119 (187)
T ss_pred HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCccCH-----HHHHH-HHHH
Confidence 456788899999999999 778887764 35688776 3334554 9999997665433 46889 9999
Q ss_pred hCCCCCCCCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEE
Q 043665 72 SIPSNDEGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKI 118 (132)
Q Consensus 72 al~~~g~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 118 (132)
.|+|||-. .+.. -..-+.+++.++++++||+..++
T Consensus 120 ~Lk~gG~l-----v~~~-------~~~~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 120 HLHPGGRL-----VLTF-------ILLENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred hcCCCeEE-----EEEE-------ecHhhHHHHHHHHHHCCCCcceE
Confidence 99999721 0100 01233578889999999986654
No 51
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.76 E-value=0.00038 Score=51.42 Aligned_cols=108 Identities=11% Similarity=0.045 Sum_probs=74.9
Q ss_pred CCCCeEEEeechhHHhhhcCCCCeEEEeccc-cCC-----CceEEEehhhhcCCC-hHHHHHHHHHHhhhhCCCCCCCCc
Q 043665 9 FPDIKCIVLICLLWWIIWWGTNNLEFFLEFE-AIP-----PANVVLLKWILHDWS-DEESLRYLKKKCEESIPSNDEGRK 81 (132)
Q Consensus 9 ~P~l~~~v~Dlp~v~~~a~~~~ri~~~~~~~-~~P-----~~D~~ll~~vlh~~~-de~~~~iL~~~~~~al~~~g~~~~ 81 (132)
++-+.++-+||-+ +.+.|.-+.|++ |+| .+|+|.++-||...| ..+.-++|+ ++.+.|+|+|....
T Consensus 70 ~~~fdvt~IDLns------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~-r~~~fL~~~g~~~~ 142 (219)
T PF11968_consen 70 SGWFDVTRIDLNS------QHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLR-RAHKFLKPPGLSLF 142 (219)
T ss_pred cCceeeEEeecCC------CCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHH-HHHHHhCCCCccCc
Confidence 3444455555533 234454444777 777 299999999999997 555889999 99999999874111
Q ss_pred chhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEecCC
Q 043665 82 TQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITPNLG 123 (132)
Q Consensus 82 ~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 123 (132)
....+=+-.-+..|++.-+.+.|..+++.-||..++.....-
T Consensus 143 ~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~K 184 (219)
T PF11968_consen 143 PSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKKSKK 184 (219)
T ss_pred ceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEecCe
Confidence 011111111234699999999999999999999988876654
No 52
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.74 E-value=0.00048 Score=54.95 Aligned_cols=117 Identities=12% Similarity=0.042 Sum_probs=80.1
Q ss_pred HHHHHHCCCCeEEEeec-hhHHhhhcC---CCCeEEEe-ccccCC-CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCC
Q 043665 3 RAIATAFPDIKCIVLIC-LLWWIIWWG---TNNLEFFL-EFEAIP-PANVVLLKWILHDWSDEESLRYLKKKCEESIPSN 76 (132)
Q Consensus 3 ~~l~~~~P~l~~~v~Dl-p~v~~~a~~---~~ri~~~~-~~~~~P-~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~ 76 (132)
..+++.+ +.+++.+|+ |..++.+++ .-.+++.. -+..++ .+|+++...++|..+++.-..+++ ++++.|+||
T Consensus 183 ~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehvg~~~~~~~l~-~i~r~LkpG 260 (383)
T PRK11705 183 RYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSVGMFEHVGPKNYRTYFE-VVRRCLKPD 260 (383)
T ss_pred HHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEeCchhhCChHHHHHHHH-HHHHHcCCC
Confidence 4455544 789999998 778887775 22355554 223334 499999999999998887889999 999999999
Q ss_pred CC-------CCcchhhhhhhh--hhcCCCccCCHHHHHHHHHhCCCeeeEEEecC
Q 043665 77 DE-------GRKTQLCFDLLM--ATFLNGKEGSVYDWKKLFLAAGFSHYKITPNL 122 (132)
Q Consensus 77 g~-------~~~~~~~~dl~m--~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 122 (132)
|- .+......+..+ ....+|...+.+++.+.++ .||.+..+...+
T Consensus 261 G~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v~d~~~~~ 314 (383)
T PRK11705 261 GLFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQASE-GLFVMEDWHNFG 314 (383)
T ss_pred cEEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHHHH-CCcEEEEEecCh
Confidence 91 111111111111 2235788899999998866 589988876654
No 53
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.73 E-value=0.00036 Score=53.54 Aligned_cols=120 Identities=15% Similarity=0.152 Sum_probs=89.4
Q ss_pred CHHHHHHHCCCCeEEEeec-hhHHhhhcC-------CCCeEEEe-ccccCC-CceEEEehhhhcCCChHHHHHHHHHHhh
Q 043665 1 MARAIATAFPDIKCIVLIC-LLWWIIWWG-------TNNLEFFL-EFEAIP-PANVVLLKWILHDWSDEESLRYLKKKCE 70 (132)
Q Consensus 1 ~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~-~~~~~P-~~D~~ll~~vlh~~~de~~~~iL~~~~~ 70 (132)
|++-.+++| +.+++.+++ ++..+.+++ .++|++.. =+..+. .+|-|+.--.++++..+.-...++ +++
T Consensus 86 l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrIvSvgmfEhvg~~~~~~ff~-~~~ 163 (283)
T COG2230 86 LAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRIVSVGMFEHVGKENYDDFFK-KVY 163 (283)
T ss_pred HHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccceeeehhhHHHhCcccHHHHHH-HHH
Confidence 356778888 999999999 555665554 56788776 333332 399999999999999999999999 999
Q ss_pred hhCCCCCC-------CC--cchhhhhhhh-hhcCCCccCCHHHHHHHHHhCCCeeeEEEecC
Q 043665 71 ESIPSNDE-------GR--KTQLCFDLLM-ATFLNGKEGSVYDWKKLFLAAGFSHYKITPNL 122 (132)
Q Consensus 71 ~al~~~g~-------~~--~~~~~~dl~m-~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 122 (132)
+.|+|||. .+ +.....+... ....||..+|.++.....+++||.+..+...+
T Consensus 164 ~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 164 ALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESLR 225 (283)
T ss_pred hhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhhc
Confidence 99999991 11 1112222221 22369999999999999999999998876554
No 54
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.66 E-value=0.00074 Score=49.92 Aligned_cols=106 Identities=18% Similarity=0.153 Sum_probs=72.8
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC------CCCeEEEe--ccccCC--CceEEEeh------hhhcCCChHH----
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG------TNNLEFFL--EFEAIP--PANVVLLK------WILHDWSDEE---- 60 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~~~P--~~D~~ll~------~vlh~~~de~---- 60 (132)
+..+++.+|+.+++.+|. |..++.++. .++++++. ++++.+ .+|+++.. ..+|.++.+.
T Consensus 102 ~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e 181 (251)
T TIGR03534 102 ALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHE 181 (251)
T ss_pred HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCchhhhhhcChhhhhcC
Confidence 456788899999999998 778877764 34688887 666554 39999873 2333333222
Q ss_pred --------------HHHHHHHHhhhhCCCCCCCCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEec
Q 043665 61 --------------SLRYLKKKCEESIPSNDEGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITPN 121 (132)
Q Consensus 61 --------------~~~iL~~~~~~al~~~g~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 121 (132)
...+++ ++.+.|+|||-. .+ .......+++.++|+++||+.+++...
T Consensus 182 ~~~~~~~~~~~~~~~~~~i~-~~~~~L~~gG~~-----~~--------~~~~~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 182 PRLALFGGEDGLDFYRRIIA-QAPRLLKPGGWL-----LL--------EIGYDQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred CHHHHcCCCcHHHHHHHHHH-HHHHhcccCCEE-----EE--------EECccHHHHHHHHHHhCCCCceEEEeC
Confidence 247888 999999998721 00 001244578999999999998776553
No 55
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.65 E-value=0.00076 Score=49.14 Aligned_cols=111 Identities=10% Similarity=-0.033 Sum_probs=70.5
Q ss_pred HHHHHCCCCeEEEeec-hhHHhhhcC-----CC-CeEEEe--ccc---cCC-CceEEEehhhhcCCChHHHHHHHHHHhh
Q 043665 4 AIATAFPDIKCIVLIC-LLWWIIWWG-----TN-NLEFFL--EFE---AIP-PANVVLLKWILHDWSDEESLRYLKKKCE 70 (132)
Q Consensus 4 ~l~~~~P~l~~~v~Dl-p~v~~~a~~-----~~-ri~~~~--~~~---~~P-~~D~~ll~~vlh~~~de~~~~iL~~~~~ 70 (132)
.+++.. .+++..|+ |..++.++. .. ++++.. +.+ +.+ .+|++++.+++|...+. ..+|+ +++
T Consensus 62 ~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~--~~~l~-~~~ 136 (224)
T TIGR01983 62 PLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDP--QAFIR-ACA 136 (224)
T ss_pred HHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhCCCH--HHHHH-HHH
Confidence 344443 35888998 556666654 12 577765 222 223 49999999999999775 47899 999
Q ss_pred hhCCCCCC------CCcc-h---hhhhhhhhhc--C-----CCccCCHHHHHHHHHhCCCeeeEEE
Q 043665 71 ESIPSNDE------GRKT-Q---LCFDLLMATF--L-----NGKEGSVYDWKKLFLAAGFSHYKIT 119 (132)
Q Consensus 71 ~al~~~g~------~~~~-~---~~~dl~m~~~--~-----~g~~rt~~e~~~ll~~aGf~~~~~~ 119 (132)
+.|+|||. .... . ...+-.+... . .....+.++|.++++++||+++++.
T Consensus 137 ~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 137 QLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred HhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 99999991 1111 1 1111111110 0 1234578999999999999998775
No 56
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.64 E-value=9.9e-05 Score=53.81 Aligned_cols=66 Identities=11% Similarity=0.062 Sum_probs=51.0
Q ss_pred CCeEEEeec-hhHHhhhcC----------------------------------CCCeEEEe--ccc-c-CC-CceEEEeh
Q 043665 11 DIKCIVLIC-LLWWIIWWG----------------------------------TNNLEFFL--EFE-A-IP-PANVVLLK 50 (132)
Q Consensus 11 ~l~~~v~Dl-p~v~~~a~~----------------------------------~~ri~~~~--~~~-~-~P-~~D~~ll~ 50 (132)
+.+...-|+ +.+++.|++ ..+|+|.. .++ + .+ .+|+|+++
T Consensus 64 ~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CR 143 (196)
T PF01739_consen 64 DFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCR 143 (196)
T ss_dssp SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-
T ss_pred ceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEec
Confidence 467888888 678888763 25788888 555 2 22 39999999
Q ss_pred hhhcCCChHHHHHHHHHHhhhhCCCCC
Q 043665 51 WILHDWSDEESLRYLKKKCEESIPSND 77 (132)
Q Consensus 51 ~vlh~~~de~~~~iL~~~~~~al~~~g 77 (132)
|||-+++++...++++ +++++|+|||
T Consensus 144 NVlIYF~~~~~~~vl~-~l~~~L~pgG 169 (196)
T PF01739_consen 144 NVLIYFDPETQQRVLR-RLHRSLKPGG 169 (196)
T ss_dssp SSGGGS-HHHHHHHHH-HHGGGEEEEE
T ss_pred CEEEEeCHHHHHHHHH-HHHHHcCCCC
Confidence 9999999999999999 9999999999
No 57
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.60 E-value=0.00022 Score=54.91 Aligned_cols=75 Identities=11% Similarity=0.089 Sum_probs=56.3
Q ss_pred HHHHHHHCC----CCeEEEeec-hhHHhhhcC-------------------------------------CCCeEEEe--c
Q 043665 2 ARAIATAFP----DIKCIVLIC-LLWWIIWWG-------------------------------------TNNLEFFL--E 37 (132)
Q Consensus 2 ~~~l~~~~P----~l~~~v~Dl-p~v~~~a~~-------------------------------------~~ri~~~~--~ 37 (132)
|+.+.+..+ +.+++.-|+ +.+++.|++ ..+|+|.. .
T Consensus 134 Amll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL 213 (287)
T PRK10611 134 AMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNL 213 (287)
T ss_pred HHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccC
Confidence 444555433 467888898 667777764 13345555 4
Q ss_pred cc-cCC---CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCC
Q 043665 38 FE-AIP---PANVVLLKWILHDWSDEESLRYLKKKCEESIPSND 77 (132)
Q Consensus 38 ~~-~~P---~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g 77 (132)
++ +.| .+|+|+++|||.+++++...++++ +++++|+|||
T Consensus 214 ~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~-~l~~~L~pgG 256 (287)
T PRK10611 214 LAKQWAVPGPFDAIFCRNVMIYFDKTTQERILR-RFVPLLKPDG 256 (287)
T ss_pred CCCCCccCCCcceeeHhhHHhcCCHHHHHHHHH-HHHHHhCCCc
Confidence 44 343 399999999999999999999999 9999999999
No 58
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.57 E-value=0.00032 Score=52.05 Aligned_cols=127 Identities=11% Similarity=0.037 Sum_probs=89.4
Q ss_pred HHHHHHCCCCeEEEeec-hhHHhhhcC-CCCeEEEe--ccccCC--CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCC
Q 043665 3 RAIATAFPDIKCIVLIC-LLWWIIWWG-TNNLEFFL--EFEAIP--PANVVLLKWILHDWSDEESLRYLKKKCEESIPSN 76 (132)
Q Consensus 3 ~~l~~~~P~l~~~v~Dl-p~v~~~a~~-~~ri~~~~--~~~~~P--~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~ 76 (132)
.-|++++|+...+.+|- |.+++.|.+ ...++|.. .-+..| ..|+++..-+||=.+| -.++|. +....|.||
T Consensus 46 elL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllfaNAvlqWlpd--H~~ll~-rL~~~L~Pg 122 (257)
T COG4106 46 ELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLFANAVLQWLPD--HPELLP-RLVSQLAPG 122 (257)
T ss_pred HHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhhhhhhhhhccc--cHHHHH-HHHHhhCCC
Confidence 45889999999999997 889998876 67788876 444444 5999999999987777 478999 999999999
Q ss_pred C------C----CCcchhh--------hhhhhhh--cCCCccCCHHHHHHHHHhCCCeeeE-----EEecCCcceEEEEE
Q 043665 77 D------E----GRKTQLC--------FDLLMAT--FLNGKEGSVYDWKKLFLAAGFSHYK-----ITPNLGLWSLIEAY 131 (132)
Q Consensus 77 g------~----~~~~~~~--------~dl~m~~--~~~g~~rt~~e~~~ll~~aGf~~~~-----~~~~~~~~~~ie~~ 131 (132)
| | .+....+ +.-.|-- ...+...|...|.++|...+-++.- -+++.|...|||++
T Consensus 123 g~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa~~~~rvDiW~T~Y~h~l~~a~aIvdWv 202 (257)
T COG4106 123 GVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLAPLACRVDIWHTTYYHQLPGADAIVDWV 202 (257)
T ss_pred ceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhCcccceeeeeeeeccccCCCccchhhhe
Confidence 9 2 1111111 1111111 1244567889999999998755421 13456778888876
Q ss_pred C
Q 043665 132 P 132 (132)
Q Consensus 132 p 132 (132)
+
T Consensus 203 k 203 (257)
T COG4106 203 K 203 (257)
T ss_pred e
Confidence 4
No 59
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.54 E-value=0.00036 Score=53.19 Aligned_cols=76 Identities=13% Similarity=0.153 Sum_probs=59.6
Q ss_pred CHHHHHHHCC-----CCeEEEeec-hhHHhhhcC-----------------------------------CCCeEEEe--c
Q 043665 1 MARAIATAFP-----DIKCIVLIC-LLWWIIWWG-----------------------------------TNNLEFFL--E 37 (132)
Q Consensus 1 ~~~~l~~~~P-----~l~~~v~Dl-p~v~~~a~~-----------------------------------~~ri~~~~--~ 37 (132)
+++.+.+.+| ..+++.-|+ ..+++.|+. ...|.|.. .
T Consensus 114 iAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NL 193 (268)
T COG1352 114 LAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNL 193 (268)
T ss_pred HHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCC
Confidence 3667777776 477888898 567777763 13455655 3
Q ss_pred c-cc-CCC-ceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCC
Q 043665 38 F-EA-IPP-ANVVLLKWILHDWSDEESLRYLKKKCEESIPSND 77 (132)
Q Consensus 38 ~-~~-~P~-~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g 77 (132)
+ ++ .++ +|+|+++|||-+++.+.-.+|++ +.+++|+|||
T Consensus 194 l~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~-~f~~~L~~gG 235 (268)
T COG1352 194 LDDSPFLGKFDLIFCRNVLIYFDEETQERILR-RFADSLKPGG 235 (268)
T ss_pred CCCccccCCCCEEEEcceEEeeCHHHHHHHHH-HHHHHhCCCC
Confidence 3 34 454 99999999999999999999999 9999999999
No 60
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.51 E-value=0.0016 Score=49.75 Aligned_cols=101 Identities=10% Similarity=-0.069 Sum_probs=69.9
Q ss_pred CCeEEEeec-hhHHhhhcC-----CCCeEEEe--ccc-cCC-CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCCC--
Q 043665 11 DIKCIVLIC-LLWWIIWWG-----TNNLEFFL--EFE-AIP-PANVVLLKWILHDWSDEESLRYLKKKCEESIPSNDE-- 78 (132)
Q Consensus 11 ~l~~~v~Dl-p~v~~~a~~-----~~ri~~~~--~~~-~~P-~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g~-- 78 (132)
+.+++.+|. |..++.+++ .-++++.. +.+ .++ .+|+++...++|..++++...+++ ++.+.|+|||-
T Consensus 142 g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l~~~~~~~~l~-~~~~~LkpgG~~l 220 (287)
T PRK12335 142 GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFLNRERIPAIIK-NMQEHTNPGGYNL 220 (287)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhCCHHHHHHHHH-HHHHhcCCCcEEE
Confidence 678999999 667776654 22455554 333 244 399999999999999999999999 99999999991
Q ss_pred ----CCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEE
Q 043665 79 ----GRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKIT 119 (132)
Q Consensus 79 ----~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 119 (132)
......... ..-....+.+|++++++. |++....
T Consensus 221 ~v~~~~~~~~~~~-----~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 221 IVCAMDTEDYPCP-----MPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred EEEecccccCCCC-----CCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 111000000 001234789999999964 8887764
No 61
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.50 E-value=0.00063 Score=49.72 Aligned_cols=71 Identities=11% Similarity=-0.030 Sum_probs=58.0
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC-CCCeEEEe--ccccCC--CceEEEehhhhcCCChHHHHHHHHHHhhhhC
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG-TNNLEFFL--EFEAIP--PANVVLLKWILHDWSDEESLRYLKKKCEESI 73 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-~~ri~~~~--~~~~~P--~~D~~ll~~vlh~~~de~~~~iL~~~~~~al 73 (132)
+..+++..|+.+++.+|+ |..++.+++ ..++++.. ++++.+ .+|+++...+||++++++..+.++ ++.+.+
T Consensus 58 ~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p~~~~~~l~-el~r~~ 134 (204)
T TIGR03587 58 LAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINPDNLPTAYR-ELYRCS 134 (204)
T ss_pred HHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCHHHHHHHHH-HHHhhc
Confidence 456777779999999998 779998877 45666665 666655 399999999999999888899999 999886
No 62
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.50 E-value=0.00067 Score=54.13 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=59.6
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC---------CCCeEEEe--ccccCC--CceEEEeh---hhhcCCChHHHHHH
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG---------TNNLEFFL--EFEAIP--PANVVLLK---WILHDWSDEESLRY 64 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~---------~~ri~~~~--~~~~~P--~~D~~ll~---~vlh~~~de~~~~i 64 (132)
+..+++++|+.+++.+|. +..++.++. .+++++.. .++.++ .+|+|++. |..|.++++.+.++
T Consensus 243 ~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l 322 (378)
T PRK15001 243 GLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEM 322 (378)
T ss_pred HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcCcccCccCCHHHHHHH
Confidence 467889999999999999 467777764 13678776 666553 49999996 44555788888999
Q ss_pred HHHHhhhhCCCCC
Q 043665 65 LKKKCEESIPSND 77 (132)
Q Consensus 65 L~~~~~~al~~~g 77 (132)
++ .+++.|+|||
T Consensus 323 ~~-~a~~~LkpGG 334 (378)
T PRK15001 323 FH-HARRCLKING 334 (378)
T ss_pred HH-HHHHhcccCC
Confidence 99 9999999998
No 63
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.47 E-value=0.0026 Score=45.74 Aligned_cols=109 Identities=10% Similarity=-0.046 Sum_probs=67.0
Q ss_pred CCCCeEEEeec-hhHHhhhcCCCCeEEEe--ccc---cCC--CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCC-CC
Q 043665 9 FPDIKCIVLIC-LLWWIIWWGTNNLEFFL--EFE---AIP--PANVVLLKWILHDWSDEESLRYLKKKCEESIPSND-EG 79 (132)
Q Consensus 9 ~P~l~~~v~Dl-p~v~~~a~~~~ri~~~~--~~~---~~P--~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g-~~ 79 (132)
....+++.+|. +..++.++. .+++++. +.+ +++ .+|++++.+++|+.+| ...+|+ ++.+.++++. ..
T Consensus 34 ~~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d--~~~~l~-e~~r~~~~~ii~~ 109 (194)
T TIGR02081 34 EKQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN--PEEILD-EMLRVGRHAIVSF 109 (194)
T ss_pred ccCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC--HHHHHH-HHHHhCCeEEEEc
Confidence 34667788897 556666544 3466665 333 243 3999999999999876 456778 7777665432 11
Q ss_pred Ccchhh---hhh----hh----------hhcCCCccCCHHHHHHHHHhCCCeeeEEEec
Q 043665 80 RKTQLC---FDL----LM----------ATFLNGKEGSVYDWKKLFLAAGFSHYKITPN 121 (132)
Q Consensus 80 ~~~~~~---~dl----~m----------~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 121 (132)
+..... ..+ .+ ......+..|.+++.++++++||++.+..-.
T Consensus 110 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 110 PNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRAAF 168 (194)
T ss_pred CChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEEEe
Confidence 111000 000 00 0001234679999999999999999876544
No 64
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.46 E-value=0.00062 Score=49.21 Aligned_cols=101 Identities=4% Similarity=-0.107 Sum_probs=68.4
Q ss_pred CCeEEEeec-hhHHhhhcC---CC--CeEEEe--ccc-cCC-CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCCC--
Q 043665 11 DIKCIVLIC-LLWWIIWWG---TN--NLEFFL--EFE-AIP-PANVVLLKWILHDWSDEESLRYLKKKCEESIPSNDE-- 78 (132)
Q Consensus 11 ~l~~~v~Dl-p~v~~~a~~---~~--ri~~~~--~~~-~~P-~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g~-- 78 (132)
+.+++.+|. |..++.++. .. ++++.. +.. +++ .+|+++...++|.+++++...+++ +++++|+|||-
T Consensus 52 g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~ll 130 (195)
T TIGR00477 52 GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDFIFSTVVFMFLQAGRVPEIIA-NMQAHTRPGGYNL 130 (195)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCEEEEecccccCCHHHHHHHHH-HHHHHhCCCcEEE
Confidence 578999999 667776654 22 244443 222 334 499999999999999988999999 99999999991
Q ss_pred ---C-CcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEE
Q 043665 79 ---G-RKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKIT 119 (132)
Q Consensus 79 ---~-~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 119 (132)
. ........ . .-....+.+|+.++|+ +|++....
T Consensus 131 i~~~~~~~~~~~~--~---~~~~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 131 IVAAMDTADYPCH--M---PFSFTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred EEEecccCCCCCC--C---CcCccCCHHHHHHHhC--CCeEEEee
Confidence 0 10000000 0 0122478999999997 58877655
No 65
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.43 E-value=0.0024 Score=46.94 Aligned_cols=107 Identities=14% Similarity=0.052 Sum_probs=68.2
Q ss_pred CCeEEEeec-hhHHhhhcC-----CCCeEEEe-cccc----CC-CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCCC
Q 043665 11 DIKCIVLIC-LLWWIIWWG-----TNNLEFFL-EFEA----IP-PANVVLLKWILHDWSDEESLRYLKKKCEESIPSNDE 78 (132)
Q Consensus 11 ~l~~~v~Dl-p~v~~~a~~-----~~ri~~~~-~~~~----~P-~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g~ 78 (132)
..+++.+|. +..++.+++ ..++++.. -.+. .+ .+|++++.++++..++. ..+|+ ++.+.|+|||-
T Consensus 70 ~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~--~~~l~-~~~~~L~~gG~ 146 (233)
T PRK05134 70 GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDP--ASFVR-ACAKLVKPGGL 146 (233)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhccCCH--HHHHH-HHHHHcCCCcE
Confidence 467888898 456666553 33566665 2221 22 49999999999998764 46889 99999999991
Q ss_pred ------CCcch-hhhh-------hhhhhcC---CCccCCHHHHHHHHHhCCCeeeEEEe
Q 043665 79 ------GRKTQ-LCFD-------LLMATFL---NGKEGSVYDWKKLFLAAGFSHYKITP 120 (132)
Q Consensus 79 ------~~~~~-~~~d-------l~m~~~~---~g~~rt~~e~~~ll~~aGf~~~~~~~ 120 (132)
..... .... ....... .+...+.++|.++++++||+++....
T Consensus 147 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~ 205 (233)
T PRK05134 147 VFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDITG 205 (233)
T ss_pred EEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeeee
Confidence 11110 0000 0000001 12346889999999999999887653
No 66
>PRK05785 hypothetical protein; Provisional
Probab=97.42 E-value=0.004 Score=46.09 Aligned_cols=125 Identities=9% Similarity=0.041 Sum_probs=78.5
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcCCCCeEEEe-ccc-cCC--CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCC
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWGTNNLEFFL-EFE-AIP--PANVVLLKWILHDWSDEESLRYLKKKCEESIPSN 76 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~~ri~~~~-~~~-~~P--~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~ 76 (132)
+..+++++ +.+++.+|. |++++.+++... .... +.+ |++ .+|+++....||+++|. .+.|+ .+++.|+|.
T Consensus 66 ~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~~-~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~--~~~l~-e~~RvLkp~ 140 (226)
T PRK05785 66 SYHFKKVF-KYYVVALDYAENMLKMNLVADD-KVVGSFEALPFRDKSFDVVMSSFALHASDNI--EKVIA-EFTRVSRKQ 140 (226)
T ss_pred HHHHHHhc-CCEEEEECCCHHHHHHHHhccc-eEEechhhCCCCCCCEEEEEecChhhccCCH--HHHHH-HHHHHhcCc
Confidence 34566666 578999998 788888876322 1223 333 555 39999999999998874 56899 999999985
Q ss_pred C---C--CCc---chhhhhh----hh--h-hcCCC-------------ccCCHHHHHHHHHhCCCeeeEEEec-CCcceE
Q 043665 77 D---E--GRK---TQLCFDL----LM--A-TFLNG-------------KEGSVYDWKKLFLAAGFSHYKITPN-LGLWSL 127 (132)
Q Consensus 77 g---~--~~~---~~~~~dl----~m--~-~~~~g-------------~~rt~~e~~~ll~~aGf~~~~~~~~-~~~~~~ 127 (132)
. + .+. ......+ .+ + ...+| .-.+.+++.++++++| +.++.... .|..++
T Consensus 141 ~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~ 219 (226)
T PRK05785 141 VGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKVYEERGLGLVYF 219 (226)
T ss_pred eEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceEEEEccccEEEE
Confidence 4 1 111 1111111 00 0 01111 1257899999999984 65666665 455677
Q ss_pred EEEEC
Q 043665 128 IEAYP 132 (132)
Q Consensus 128 ie~~p 132 (132)
..++|
T Consensus 220 ~~~~k 224 (226)
T PRK05785 220 VVGSS 224 (226)
T ss_pred EEEee
Confidence 76654
No 67
>PRK04457 spermidine synthase; Provisional
Probab=97.39 E-value=0.00051 Score=52.06 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=55.3
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC-------CCCeEEEe-----ccccCC-CceEEEehhhhcC--CChH-HHHHH
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG-------TNNLEFFL-----EFEAIP-PANVVLLKWILHD--WSDE-ESLRY 64 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~-----~~~~~P-~~D~~ll~~vlh~--~~de-~~~~i 64 (132)
+..+++.+|+.+++++|+ |.+++.+++ .+|++++. ++...+ ++|+|++.. .+. .+.. ...++
T Consensus 81 ~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~-~~~~~~~~~l~t~ef 159 (262)
T PRK04457 81 AKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG-FDGEGIIDALCTQPF 159 (262)
T ss_pred HHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-CCCCCCccccCcHHH
Confidence 456788999999999999 999998875 36888886 344455 499998842 221 2221 13799
Q ss_pred HHHHhhhhCCCCC
Q 043665 65 LKKKCEESIPSND 77 (132)
Q Consensus 65 L~~~~~~al~~~g 77 (132)
++ ++++.|+|||
T Consensus 160 l~-~~~~~L~pgG 171 (262)
T PRK04457 160 FD-DCRNALSSDG 171 (262)
T ss_pred HH-HHHHhcCCCc
Confidence 99 9999999999
No 68
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.29 E-value=0.0087 Score=44.93 Aligned_cols=115 Identities=16% Similarity=0.114 Sum_probs=74.5
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC------CCCeEEEe--ccccCC--CceEEEeh------hhhcCCCh------
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG------TNNLEFFL--EFEAIP--PANVVLLK------WILHDWSD------ 58 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~~~P--~~D~~ll~------~vlh~~~d------ 58 (132)
+..+++.+|+.+++.+|. |..++.+++ ..+++++. ++++.+ .+|+++.. ..++...+
T Consensus 123 ~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~e 202 (275)
T PRK09328 123 ALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHE 202 (275)
T ss_pred HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCcCCcchhhhCCchhhhcC
Confidence 457788899999999998 667776664 35788887 777655 49999873 22221211
Q ss_pred ------------HHHHHHHHHHhhhhCCCCCCCCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEE-ecCCcc
Q 043665 59 ------------EESLRYLKKKCEESIPSNDEGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKIT-PNLGLW 125 (132)
Q Consensus 59 ------------e~~~~iL~~~~~~al~~~g~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~-~~~~~~ 125 (132)
+....+++ ++.+.|+|||-. .+ ..+ ....+++.+++++.||+.+.+. +..|..
T Consensus 203 p~~al~~g~~g~~~~~~~~~-~~~~~Lk~gG~l-----~~------e~g--~~~~~~~~~~l~~~gf~~v~~~~d~~~~~ 268 (275)
T PRK09328 203 PHLALFGGEDGLDFYRRIIE-QAPRYLKPGGWL-----LL------EIG--YDQGEAVRALLAAAGFADVETRKDLAGRD 268 (275)
T ss_pred CchhhcCCCCHHHHHHHHHH-HHHHhcccCCEE-----EE------EEC--chHHHHHHHHHHhCCCceeEEecCCCCCc
Confidence 22367888 888899998720 00 011 1335679999999999866653 444544
Q ss_pred eEEEE
Q 043665 126 SLIEA 130 (132)
Q Consensus 126 ~~ie~ 130 (132)
-++-+
T Consensus 269 r~~~~ 273 (275)
T PRK09328 269 RVVLG 273 (275)
T ss_pred eEEEE
Confidence 44433
No 69
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.17 E-value=0.0019 Score=48.47 Aligned_cols=115 Identities=11% Similarity=-0.012 Sum_probs=76.9
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC---CC--CeEEEe--ccc--cC-CCceEEEehhhhcCCChHHHHHHHHHHhh
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG---TN--NLEFFL--EFE--AI-PPANVVLLKWILHDWSDEESLRYLKKKCE 70 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~---~~--ri~~~~--~~~--~~-P~~D~~ll~~vlh~~~de~~~~iL~~~~~ 70 (132)
+..+++.- .+++..|. +..++.|+. .. .|++.+ ..+ .. .+||+|++-.||++.+|.+. +++ .|.
T Consensus 74 se~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~--~~~-~c~ 148 (243)
T COG2227 74 SEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPES--FLR-ACA 148 (243)
T ss_pred hHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHH--HHH-HHH
Confidence 44555554 78899998 667887774 22 344665 222 22 35999999999999999875 999 999
Q ss_pred hhCCCCC-------CCCcchh---hhhhhh---hhc----CCCccCCHHHHHHHHHhCCCeeeEEEec
Q 043665 71 ESIPSND-------EGRKTQL---CFDLLM---ATF----LNGKEGSVYDWKKLFLAAGFSHYKITPN 121 (132)
Q Consensus 71 ~al~~~g-------~~~~~~~---~~dl~m---~~~----~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 121 (132)
+-++||| +....+. .+.... ++- .-++...++|...++.++||.+.....+
T Consensus 149 ~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~ 216 (243)
T COG2227 149 KLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGL 216 (243)
T ss_pred HHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecce
Confidence 9999999 1111111 111111 111 1245678899999999999998876543
No 70
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.16 E-value=0.0095 Score=46.20 Aligned_cols=105 Identities=14% Similarity=0.141 Sum_probs=71.1
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC-------CCCeEEEe--ccccCC--CceEEEehh-------------hhcCC
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG-------TNNLEFFL--EFEAIP--PANVVLLKW-------------ILHDW 56 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~--~~~~~P--~~D~~ll~~-------------vlh~~ 56 (132)
+..+++++|+.+++.+|+ |..++.++. .+||+++. +++.+| .+|+++..- ..+..
T Consensus 148 ai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~e 227 (307)
T PRK11805 148 AIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDAEDMADLPAEYRHE 227 (307)
T ss_pred HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCccchhhcCHhhccC
Confidence 467888999999999999 888888775 35799888 777665 399999741 11222
Q ss_pred Ch----------HHHHHHHHHHhhhhCCCCCCCCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEec
Q 043665 57 SD----------EESLRYLKKKCEESIPSNDEGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITPN 121 (132)
Q Consensus 57 ~d----------e~~~~iL~~~~~~al~~~g~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 121 (132)
+. +....+++ ++.+.|+|||- ..+. .+ .+.++..+++.+.||......+.
T Consensus 228 P~~AL~gg~dGl~~~~~i~~-~a~~~L~pgG~-----l~~E------~g---~~~~~~~~~~~~~~~~~~~~~~~ 287 (307)
T PRK11805 228 PELALAAGDDGLDLVRRILA-EAPDYLTEDGV-----LVVE------VG---NSRVHLEEAYPDVPFTWLEFENG 287 (307)
T ss_pred ccceeeCCCchHHHHHHHHH-HHHHhcCCCCE-----EEEE------EC---cCHHHHHHHHhhCCCEEEEecCC
Confidence 21 33468889 99999999972 0110 11 12346777788888776666554
No 71
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.14 E-value=0.00096 Score=50.81 Aligned_cols=109 Identities=13% Similarity=0.144 Sum_probs=66.5
Q ss_pred HHHCCCCeEEEeec-hhHHhhhcC----CC--CeEEEe--cccc-----CC---------CceEEEehhhhcCCCh-HHH
Q 043665 6 ATAFPDIKCIVLIC-LLWWIIWWG----TN--NLEFFL--EFEA-----IP---------PANVVLLKWILHDWSD-EES 61 (132)
Q Consensus 6 ~~~~P~l~~~v~Dl-p~v~~~a~~----~~--ri~~~~--~~~~-----~P---------~~D~~ll~~vlh~~~d-e~~ 61 (132)
.+..|+.+++=+|. |-|+.+++. .+ +..++. +.++ -| .-=.++|..|||..+| ++.
T Consensus 90 q~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp 169 (267)
T PF04672_consen 90 QRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDP 169 (267)
T ss_dssp HHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTH
T ss_pred HhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCH
Confidence 35689999999998 888888876 33 377776 5542 11 1237899999999977 789
Q ss_pred HHHHHHHhhhhCCCCC---------CC-Ccc-hhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeE
Q 043665 62 LRYLKKKCEESIPSND---------EG-RKT-QLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYK 117 (132)
Q Consensus 62 ~~iL~~~~~~al~~~g---------~~-~~~-~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~ 117 (132)
..+++ ..+++|+||+ +. ++. ....++.-.....+..||.+|+.++|. ||++..
T Consensus 170 ~~iv~-~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 170 AGIVA-RLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp HHHHH-HHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCT--TSEE-T
T ss_pred HHHHH-HHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcC--CCccCC
Confidence 99999 9999999998 11 111 122222222234577899999999998 888654
No 72
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.14 E-value=0.0017 Score=48.81 Aligned_cols=113 Identities=14% Similarity=0.125 Sum_probs=80.2
Q ss_pred HHHHCCC--CeEEEeec-hhHHhhhcC-----CCCeE-EEe-ccc-----cCC-C-ceEEEehhhhcCCChHHHHHHHHH
Q 043665 5 IATAFPD--IKCIVLIC-LLWWIIWWG-----TNNLE-FFL-EFE-----AIP-P-ANVVLLKWILHDWSDEESLRYLKK 67 (132)
Q Consensus 5 l~~~~P~--l~~~v~Dl-p~v~~~a~~-----~~ri~-~~~-~~~-----~~P-~-~D~~ll~~vlh~~~de~~~~iL~~ 67 (132)
|++.+|+ ++....|. |..++..++ ..|+. ++- +-. +.+ + .|.+.+--||...+.+.-...++
T Consensus 89 ll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~- 167 (264)
T KOG2361|consen 89 LLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIK- 167 (264)
T ss_pred hhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHH-
Confidence 5566677 88999997 778887776 22332 222 221 222 2 89999999999999999999999
Q ss_pred HhhhhCCCCC-----CC---------CcchhhhhhhhhhcCCC---ccCCHHHHHHHHHhCCCeeeEE
Q 043665 68 KCEESIPSND-----EG---------RKTQLCFDLLMATFLNG---KEGSVYDWKKLFLAAGFSHYKI 118 (132)
Q Consensus 68 ~~~~al~~~g-----~~---------~~~~~~~dl~m~~~~~g---~~rt~~e~~~ll~~aGf~~~~~ 118 (132)
+++..|+||| +. ......++-+..+-..| .-.+.+++..|+.+|||..++.
T Consensus 168 nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~ 235 (264)
T KOG2361|consen 168 NLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQL 235 (264)
T ss_pred HHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhcc
Confidence 9999999999 11 11224455554443333 2478999999999999997664
No 73
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.13 E-value=0.0066 Score=45.18 Aligned_cols=103 Identities=4% Similarity=-0.133 Sum_probs=66.6
Q ss_pred CCCeEEEeec-hhHHhhhcC-CCCeEEEe--ccc-cCC--CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCCC----
Q 043665 10 PDIKCIVLIC-LLWWIIWWG-TNNLEFFL--EFE-AIP--PANVVLLKWILHDWSDEESLRYLKKKCEESIPSNDE---- 78 (132)
Q Consensus 10 P~l~~~v~Dl-p~v~~~a~~-~~ri~~~~--~~~-~~P--~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g~---- 78 (132)
++.+++.+|+ |..++.++. ...+.++. +.+ +++ .+|+++....+|..+| ...+|+ ++.+.|+|||-
T Consensus 63 ~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d--~~~~l~-~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 63 RGSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGN--LSTALR-ELYRVVRPGGVVAFT 139 (251)
T ss_pred cCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCC--HHHHHH-HHHHHcCCCeEEEEE
Confidence 3568899999 888888776 23344554 333 444 3999999988886555 468899 99999999991
Q ss_pred --CCc-chhhhhhhhhh---cCCCccCCHHHHHHHHHhCCCee
Q 043665 79 --GRK-TQLCFDLLMAT---FLNGKEGSVYDWKKLFLAAGFSH 115 (132)
Q Consensus 79 --~~~-~~~~~dl~m~~---~~~g~~rt~~e~~~ll~~aGf~~ 115 (132)
... ........-.. .....-.+.+++.+++.+.|+..
T Consensus 140 ~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 140 TLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred eCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCcee
Confidence 111 11111110000 01233468999999999999874
No 74
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.13 E-value=0.0028 Score=49.88 Aligned_cols=75 Identities=15% Similarity=0.094 Sum_probs=57.8
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC---C--CCeEEEe--ccccCCC-ceEEEehhhhcCC---ChHHHHHHHHHHh
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG---T--NNLEFFL--EFEAIPP-ANVVLLKWILHDW---SDEESLRYLKKKC 69 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~---~--~ri~~~~--~~~~~P~-~D~~ll~~vlh~~---~de~~~~iL~~~~ 69 (132)
+..+++++|+.+++.+|. +..++.++. . -..+++. .++..++ +|+++..--+|+. +.+...++++ ++
T Consensus 211 s~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~-~a 289 (342)
T PRK09489 211 SAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMIISNPPFHDGIQTSLDAAQTLIR-GA 289 (342)
T ss_pred HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEEECCCccCCccccHHHHHHHHH-HH
Confidence 567888999999999998 567777764 1 2234454 5555554 9999999888873 4566789999 99
Q ss_pred hhhCCCCC
Q 043665 70 EESIPSND 77 (132)
Q Consensus 70 ~~al~~~g 77 (132)
.+.|+|||
T Consensus 290 ~~~LkpgG 297 (342)
T PRK09489 290 VRHLNSGG 297 (342)
T ss_pred HHhcCcCC
Confidence 99999998
No 75
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.04 E-value=0.014 Score=44.65 Aligned_cols=106 Identities=15% Similarity=0.159 Sum_probs=72.3
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC-------CCCeEEEe--ccccCC--CceEEEeh-------------hhhcCC
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG-------TNNLEFFL--EFEAIP--PANVVLLK-------------WILHDW 56 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~--~~~~~P--~~D~~ll~-------------~vlh~~ 56 (132)
+..+++++|+.+++.+|. |..++.++. .+||+++. +++++| .+|+++.. ...+..
T Consensus 136 ~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~e 215 (284)
T TIGR03533 136 AIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYVDAEDMADLPAEYHHE 215 (284)
T ss_pred HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCCCccchhhCCHhhhcC
Confidence 467888899999999999 778887765 35898887 777665 39999974 111211
Q ss_pred Ch----------HHHHHHHHHHhhhhCCCCCCCCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEecC
Q 043665 57 SD----------EESLRYLKKKCEESIPSNDEGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITPNL 122 (132)
Q Consensus 57 ~d----------e~~~~iL~~~~~~al~~~g~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 122 (132)
+. +....+++ .+.+.|+|||- ..+. .+ .+.++.++++.++||........+
T Consensus 216 p~~al~gg~dGl~~~~~il~-~a~~~L~~gG~-----l~~e------~g---~~~~~v~~~~~~~~~~~~~~~~~~ 276 (284)
T TIGR03533 216 PELALASGEDGLDLVRRILA-EAADHLNENGV-----LVVE------VG---NSMEALEEAYPDVPFTWLEFENGG 276 (284)
T ss_pred HHHHhcCCCcHHHHHHHHHH-HHHHhcCCCCE-----EEEE------EC---cCHHHHHHHHHhCCCceeeecCCC
Confidence 11 23467888 88999999862 1111 12 234688899999998876555443
No 76
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.04 E-value=0.0025 Score=41.64 Aligned_cols=70 Identities=9% Similarity=-0.098 Sum_probs=51.3
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC------CCCeEEEe--ccc---cCC-CceEEEehhhhcCCChHHHHHHHHHH
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG------TNNLEFFL--EFE---AIP-PANVVLLKWILHDWSDEESLRYLKKK 68 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~---~~P-~~D~~ll~~vlh~~~de~~~~iL~~~ 68 (132)
+..+++++|+.+++.+|. +..++.++. ..+++++. ... ..+ .+|++++.... .....+++ .
T Consensus 34 ~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~-----~~~~~~l~-~ 107 (124)
T TIGR02469 34 TIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSG-----GLLQEILE-A 107 (124)
T ss_pred HHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcc-----hhHHHHHH-H
Confidence 467888999999999998 667776654 35677765 222 223 49999986543 33458999 9
Q ss_pred hhhhCCCCC
Q 043665 69 CEESIPSND 77 (132)
Q Consensus 69 ~~~al~~~g 77 (132)
+++.|+|||
T Consensus 108 ~~~~Lk~gG 116 (124)
T TIGR02469 108 IWRRLRPGG 116 (124)
T ss_pred HHHHcCCCC
Confidence 999999997
No 77
>PRK04266 fibrillarin; Provisional
Probab=97.03 E-value=0.028 Score=41.80 Aligned_cols=119 Identities=8% Similarity=-0.032 Sum_probs=70.7
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhh----cCCCCeEEEe--ccc-----cCC-CceEEEehhhhcCCChH-HHHHHHHH
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIW----WGTNNLEFFL--EFE-----AIP-PANVVLLKWILHDWSDE-ESLRYLKK 67 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a----~~~~ri~~~~--~~~-----~~P-~~D~~ll~~vlh~~~de-~~~~iL~~ 67 (132)
+..+++..+.-+++.+|. |..++.+ +...+|.++. ..+ +++ .+|+++ |+.++. ....+|+
T Consensus 87 ~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~-----~d~~~p~~~~~~L~- 160 (226)
T PRK04266 87 VSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY-----QDVAQPNQAEIAID- 160 (226)
T ss_pred HHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE-----ECCCChhHHHHHHH-
Confidence 345677777668999998 6555533 3345676664 332 233 388887 455443 3456789
Q ss_pred HhhhhCCCCCCC--CcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEecCCc---ceEEEEE
Q 043665 68 KCEESIPSNDEG--RKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITPNLGL---WSLIEAY 131 (132)
Q Consensus 68 ~~~~al~~~g~~--~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~---~~~ie~~ 131 (132)
++++.|+|||.. .-.....|... .. .+..++..++++++||+..+....... +..+.++
T Consensus 161 ~~~r~LKpGG~lvI~v~~~~~d~~~----~~-~~~~~~~~~~l~~aGF~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 161 NAEFFLKDGGYLLLAIKARSIDVTK----DP-KEIFKEEIRKLEEGGFEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred HHHHhcCCCcEEEEEEecccccCcC----CH-HHHHHHHHHHHHHcCCeEEEEEcCCCCcCCeEEEEEE
Confidence 999999999920 00001122211 11 133356679999999999988776533 5555443
No 78
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=96.78 E-value=0.0047 Score=43.59 Aligned_cols=75 Identities=17% Similarity=0.160 Sum_probs=57.3
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC------CCCeEEEe--ccccCC--CceEEEehhhhcCCCh---HHHHHHHHH
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG------TNNLEFFL--EFEAIP--PANVVLLKWILHDWSD---EESLRYLKK 67 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~~~P--~~D~~ll~~vlh~~~d---e~~~~iL~~ 67 (132)
+..+++++|+.+++.+|. |..++.++. .+.++++. .++.++ .+|++++.-=+|.-.+ +-..++++
T Consensus 46 ~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~- 124 (170)
T PF05175_consen 46 SLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIE- 124 (170)
T ss_dssp HHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHH-
T ss_pred HHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhcccccchhhHHHHHH-
Confidence 567889999999999998 777777764 22388877 888766 4999999876766554 45788999
Q ss_pred HhhhhCCCCC
Q 043665 68 KCEESIPSND 77 (132)
Q Consensus 68 ~~~~al~~~g 77 (132)
.+.+.|+|||
T Consensus 125 ~a~~~Lk~~G 134 (170)
T PF05175_consen 125 QARRYLKPGG 134 (170)
T ss_dssp HHHHHEEEEE
T ss_pred HHHHhccCCC
Confidence 9999999998
No 79
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=96.73 E-value=0.013 Score=43.20 Aligned_cols=103 Identities=16% Similarity=0.180 Sum_probs=68.6
Q ss_pred CCeEEEeec-hhHHhhhcC------------------CCCeEEEe--ccc-c---CCCceEEEehhhhcCCChHHHHHHH
Q 043665 11 DIKCIVLIC-LLWWIIWWG------------------TNNLEFFL--EFE-A---IPPANVVLLKWILHDWSDEESLRYL 65 (132)
Q Consensus 11 ~l~~~v~Dl-p~v~~~a~~------------------~~ri~~~~--~~~-~---~P~~D~~ll~~vlh~~~de~~~~iL 65 (132)
+.+++.+|+ |..++.+.. ..+|++.. +|+ + .+.+|.++-+.++|.++.+.....+
T Consensus 56 G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~ 135 (213)
T TIGR03840 56 GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYA 135 (213)
T ss_pred CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHH
Confidence 678999998 666665421 24677665 776 2 2358999999999999999999999
Q ss_pred HHHhhhhCCCCCCCCcchhhhhhhhhhcCCCc--cCCHHHHHHHHHhCCCeeeEE
Q 043665 66 KKKCEESIPSNDEGRKTQLCFDLLMATFLNGK--EGSVYDWKKLFLAAGFSHYKI 118 (132)
Q Consensus 66 ~~~~~~al~~~g~~~~~~~~~dl~m~~~~~g~--~rt~~e~~~ll~~aGf~~~~~ 118 (132)
+ ++.++|+|||-.--.....+ . ...+|. ..|.+|+.++|.. +|.+..+
T Consensus 136 ~-~l~~lLkpgG~~ll~~~~~~-~--~~~~gpp~~~~~~eL~~~f~~-~~~i~~~ 185 (213)
T TIGR03840 136 A-HLLALLPPGARQLLITLDYD-Q--SEMAGPPFSVSPAEVEALYGG-HYEIELL 185 (213)
T ss_pred H-HHHHHcCCCCeEEEEEEEcC-C--CCCCCcCCCCCHHHHHHHhcC-CceEEEE
Confidence 9 99999999982000000000 0 001222 4889999999974 4555544
No 80
>PRK14968 putative methyltransferase; Provisional
Probab=96.71 E-value=0.056 Score=37.93 Aligned_cols=114 Identities=13% Similarity=-0.024 Sum_probs=70.2
Q ss_pred HHHHHHCCCCeEEEeec-hhHHhhhcC-------CCC-eEEEe--ccccCC--CceEEEehhhhcCCC------------
Q 043665 3 RAIATAFPDIKCIVLIC-LLWWIIWWG-------TNN-LEFFL--EFEAIP--PANVVLLKWILHDWS------------ 57 (132)
Q Consensus 3 ~~l~~~~P~l~~~v~Dl-p~v~~~a~~-------~~r-i~~~~--~~~~~P--~~D~~ll~~vlh~~~------------ 57 (132)
..+++. +.+++.+|+ |.+++.+++ .++ +.++. ++++++ .+|+++...-.+..+
T Consensus 39 ~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~ 116 (188)
T PRK14968 39 IVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYLPTEEEEEWDDWLNYA 116 (188)
T ss_pred HHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCcCCCCchhhhhhhhhhh
Confidence 445555 678999999 677777754 223 77766 666554 399998754432211
Q ss_pred -------hHHHHHHHHHHhhhhCCCCCCCCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEec--CC-cceE
Q 043665 58 -------DEESLRYLKKKCEESIPSNDEGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITPN--LG-LWSL 127 (132)
Q Consensus 58 -------de~~~~iL~~~~~~al~~~g~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~--~~-~~~~ 127 (132)
......+++ ++.+.|+|||..- +. . +-....+++.++++++||++..+... .. ...+
T Consensus 117 ~~~~~~~~~~~~~~i~-~~~~~Lk~gG~~~----------~~-~-~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~ 183 (188)
T PRK14968 117 LSGGKDGREVIDRFLD-EVGRYLKPGGRIL----------LL-Q-SSLTGEDEVLEYLEKLGFEAEVVAEEKFPFEELIV 183 (188)
T ss_pred hccCcChHHHHHHHHH-HHHHhcCCCeEEE----------EE-E-cccCCHHHHHHHHHHCCCeeeeeeecccCCceEEE
Confidence 222456788 9999999987210 00 0 01123568899999999998776543 22 2445
Q ss_pred EEEE
Q 043665 128 IEAY 131 (132)
Q Consensus 128 ie~~ 131 (132)
++.+
T Consensus 184 ~~~~ 187 (188)
T PRK14968 184 LELV 187 (188)
T ss_pred EEEe
Confidence 5544
No 81
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=96.66 E-value=0.0081 Score=43.06 Aligned_cols=107 Identities=14% Similarity=0.064 Sum_probs=69.9
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC------CCCeEEEe--ccc-c-CCCceEEEehhhhcCCChHHHHHHHHHHhh
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG------TNNLEFFL--EFE-A-IPPANVVLLKWILHDWSDEESLRYLKKKCE 70 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~-~-~P~~D~~ll~~vlh~~~de~~~~iL~~~~~ 70 (132)
+..++..+|+.+++.+|. |..++.+++ .++++++. ..+ + ...+|+++... +|++ ..+++ .++
T Consensus 57 s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~-----~~~~~-~~~ 129 (181)
T TIGR00138 57 GIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL-----NVLLE-LTL 129 (181)
T ss_pred HHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH-----HHHHH-HHH
Confidence 456678899999999998 556665543 34688887 433 2 22499988765 5554 34778 888
Q ss_pred hhCCCCCCCCcchhhhhhhhhhcCCCccCCHHHHHHHHHh---CCCeeeEEEecCCc-ceEE
Q 043665 71 ESIPSNDEGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLA---AGFSHYKITPNLGL-WSLI 128 (132)
Q Consensus 71 ~al~~~g~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~---aGf~~~~~~~~~~~-~~~i 128 (132)
+.|+|||-.- ... ......++..+.++ .||+..+..+..++ .+++
T Consensus 130 ~~LkpgG~lv-----------i~~--~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 178 (181)
T TIGR00138 130 NLLKVGGYFL-----------AYK--GKKYLDEIEEAKRKCQVLGVEPLEVPPLTGPDRHLV 178 (181)
T ss_pred HhcCCCCEEE-----------EEc--CCCcHHHHHHHHHhhhhcCceEeeccccCCCceEEE
Confidence 8999997210 001 12446677777777 69998888776443 4443
No 82
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.60 E-value=0.049 Score=45.09 Aligned_cols=115 Identities=12% Similarity=0.135 Sum_probs=73.7
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC-------CCCeEEEe--ccccCC--CceEEEeh--h------------hhcC
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG-------TNNLEFFL--EFEAIP--PANVVLLK--W------------ILHD 55 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~--~~~~~P--~~D~~ll~--~------------vlh~ 55 (132)
+..+++++|+.+++.+|. |..++.++. .+|++++. +++.++ .+|+++.. . ++..
T Consensus 153 ai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~ 232 (506)
T PRK01544 153 AISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYISHSEKSEMAIETINY 232 (506)
T ss_pred HHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCCchhhhhcCchhhcc
Confidence 456788899999999999 778887775 35888887 777654 39999873 1 1111
Q ss_pred CC------h----HHHHHHHHHHhhhhCCCCCCCCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEE-ecCCc
Q 043665 56 WS------D----EESLRYLKKKCEESIPSNDEGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKIT-PNLGL 124 (132)
Q Consensus 56 ~~------d----e~~~~iL~~~~~~al~~~g~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~-~~~~~ 124 (132)
.+ . +.-.++++ ++...|+|||- ..+ ..+ ....++..+++++.||..+.+. +..|.
T Consensus 233 EP~~AL~gg~dGl~~~~~il~-~a~~~L~~gG~-----l~l------Eig--~~q~~~v~~~~~~~g~~~~~~~~D~~g~ 298 (506)
T PRK01544 233 EPSIALFAEEDGLQAYFIIAE-NAKQFLKPNGK-----IIL------EIG--FKQEEAVTQIFLDHGYNIESVYKDLQGH 298 (506)
T ss_pred CcHHHhcCCccHHHHHHHHHH-HHHHhccCCCE-----EEE------EEC--CchHHHHHHHHHhcCCCceEEEecCCCC
Confidence 11 1 12345677 77778888762 000 011 2345678899999999977654 45555
Q ss_pred ceEEEE
Q 043665 125 WSLIEA 130 (132)
Q Consensus 125 ~~~ie~ 130 (132)
.-++.+
T Consensus 299 ~R~v~~ 304 (506)
T PRK01544 299 SRVILI 304 (506)
T ss_pred ceEEEe
Confidence 444443
No 83
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=96.58 E-value=0.035 Score=42.08 Aligned_cols=113 Identities=13% Similarity=0.109 Sum_probs=73.7
Q ss_pred CHHHHHHHCCCCeEEEeec-hhHHhhhcC-----------------------------------------CCCeEEEe--
Q 043665 1 MARAIATAFPDIKCIVLIC-LLWWIIWWG-----------------------------------------TNNLEFFL-- 36 (132)
Q Consensus 1 ~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-----------------------------------------~~ri~~~~-- 36 (132)
|...+++.|-....+.+|+ |..|+.|+. .+.+.|+.
T Consensus 72 lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t~~~p~n~~f~~~n 151 (288)
T KOG2899|consen 72 LTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFTTDFPDNVWFQKEN 151 (288)
T ss_pred hHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccccccCCcchhccccc
Confidence 4567888888888899998 556666663 01222322
Q ss_pred -------ccc-cCCCceEEEe----hhhhcCCChHHHHHHHHHHhhhhCCCCC-----CCCcchhhhhhhhh----hcCC
Q 043665 37 -------EFE-AIPPANVVLL----KWILHDWSDEESLRYLKKKCEESIPSND-----EGRKTQLCFDLLMA----TFLN 95 (132)
Q Consensus 37 -------~~~-~~P~~D~~ll----~~vlh~~~de~~~~iL~~~~~~al~~~g-----~~~~~~~~~dl~m~----~~~~ 95 (132)
|.+ ..|.+|++++ +||=-+|.|+-.+++++ ++++.|.||| |.+.....-.-.+. .+.-
T Consensus 152 ~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~-kis~ll~pgGiLvvEPQpWksY~kaar~~e~~~~ny~ 230 (288)
T KOG2899|consen 152 YVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFR-KISSLLHPGGILVVEPQPWKSYKKAARRSEKLAANYF 230 (288)
T ss_pred EEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHH-HHHHhhCcCcEEEEcCCchHHHHHHHHHHHHhhcCcc
Confidence 333 2456998876 57777899999999999 9999999999 33332211111111 1122
Q ss_pred CccCCHHHHHHHHHhCCCe
Q 043665 96 GKEGSVYDWKKLFLAAGFS 114 (132)
Q Consensus 96 g~~rt~~e~~~ll~~aGf~ 114 (132)
--...++.+..++.++|..
T Consensus 231 ~i~lkp~~f~~~l~q~~vg 249 (288)
T KOG2899|consen 231 KIFLKPEDFEDWLNQIVVG 249 (288)
T ss_pred ceecCHHHHHhhhhhhhhh
Confidence 2346788999999998433
No 84
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.50 E-value=0.011 Score=45.97 Aligned_cols=88 Identities=20% Similarity=0.167 Sum_probs=59.4
Q ss_pred CeEEEe-ccccCC---CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCCC---------CCcchhhhhh-hhhhcCC-
Q 043665 31 NLEFFL-EFEAIP---PANVVLLKWILHDWSDEESLRYLKKKCEESIPSNDE---------GRKTQLCFDL-LMATFLN- 95 (132)
Q Consensus 31 ri~~~~-~~~~~P---~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g~---------~~~~~~~~dl-~m~~~~~- 95 (132)
++.+.+ ..+.+| .+|++++--||++-.+. ...|+ .++++|++||+ +.+...+.-- ...-+.|
T Consensus 166 ~~~~lplgvE~Lp~~~~FDtVF~MGVLYHrr~P--l~~L~-~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv 242 (315)
T PF08003_consen 166 PVFELPLGVEDLPNLGAFDTVFSMGVLYHRRSP--LDHLK-QLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNV 242 (315)
T ss_pred cEEEcCcchhhccccCCcCEEEEeeehhccCCH--HHHHH-HHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCce
Confidence 455555 445554 39999999999998663 78888 99999999992 2111111000 0000112
Q ss_pred CccCCHHHHHHHHHhCCCeeeEEEec
Q 043665 96 GKEGSVYDWKKLFLAAGFSHYKITPN 121 (132)
Q Consensus 96 g~~rt~~e~~~ll~~aGf~~~~~~~~ 121 (132)
-...|..-+..|++.+||+.+++...
T Consensus 243 ~FiPs~~~L~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 243 WFIPSVAALKNWLERAGFKDVRCVDV 268 (315)
T ss_pred EEeCCHHHHHHHHHHcCCceEEEecC
Confidence 34589999999999999999988765
No 85
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.48 E-value=0.021 Score=34.91 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=53.4
Q ss_pred HHHHHCCCCeEEEeec-hhHHhhhcC------CCCeEEEe--ccccC---C-CceEEEehhhhcCCChHHHHHHHHHHhh
Q 043665 4 AIATAFPDIKCIVLIC-LLWWIIWWG------TNNLEFFL--EFEAI---P-PANVVLLKWILHDWSDEESLRYLKKKCE 70 (132)
Q Consensus 4 ~l~~~~P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~~~---P-~~D~~ll~~vlh~~~de~~~~iL~~~~~ 70 (132)
.+++ ++..+.+.+|. +..++.+++ ..++++.. +.+.. + ++|++++...++.+ .+....+++ ++.
T Consensus 15 ~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~-~~~~~~~l~-~~~ 91 (107)
T cd02440 15 ALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL-VEDLARFLE-EAR 91 (107)
T ss_pred HHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh-hhHHHHHHH-HHH
Confidence 4444 67889999998 455555551 45777777 55422 2 49999999999886 667899999 999
Q ss_pred hhCCCCC
Q 043665 71 ESIPSND 77 (132)
Q Consensus 71 ~al~~~g 77 (132)
+.++++|
T Consensus 92 ~~l~~~g 98 (107)
T cd02440 92 RLLKPGG 98 (107)
T ss_pred HHcCCCC
Confidence 9999987
No 86
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=96.19 E-value=0.12 Score=40.18 Aligned_cols=76 Identities=9% Similarity=0.021 Sum_probs=59.3
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC------CCC-eEEEe-ccccCCC-ceEEEehhhhcC---CChHHHHHHHHHH
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG------TNN-LEFFL-EFEAIPP-ANVVLLKWILHD---WSDEESLRYLKKK 68 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~------~~r-i~~~~-~~~~~P~-~D~~ll~~vlh~---~~de~~~~iL~~~ 68 (132)
.+.+++.+|+.+.+.+|. ...++.++. -++ ..+.. .|++++. +|.|++.==+|. ..+.-+.+|++ .
T Consensus 173 g~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd~IisNPPfh~G~~v~~~~~~~~i~-~ 251 (300)
T COG2813 173 GLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFDLIISNPPFHAGKAVVHSLAQEIIA-A 251 (300)
T ss_pred HHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccccEEEeCCCccCCcchhHHHHHHHHH-H
Confidence 567899999999999998 457777765 233 33444 8887765 999999977775 45666779999 9
Q ss_pred hhhhCCCCCC
Q 043665 69 CEESIPSNDE 78 (132)
Q Consensus 69 ~~~al~~~g~ 78 (132)
+.+.|++||+
T Consensus 252 A~~~L~~gGe 261 (300)
T COG2813 252 AARHLKPGGE 261 (300)
T ss_pred HHHhhccCCE
Confidence 9999999984
No 87
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=96.09 E-value=0.047 Score=40.30 Aligned_cols=105 Identities=14% Similarity=0.147 Sum_probs=69.7
Q ss_pred CCCeEEEeec-hhHHhhhcC------------------CCCeEEEe--cccc----CCCceEEEehhhhcCCChHHHHHH
Q 043665 10 PDIKCIVLIC-LLWWIIWWG------------------TNNLEFFL--EFEA----IPPANVVLLKWILHDWSDEESLRY 64 (132)
Q Consensus 10 P~l~~~v~Dl-p~v~~~a~~------------------~~ri~~~~--~~~~----~P~~D~~ll~~vlh~~~de~~~~i 64 (132)
-+.+++.+|+ |..++.+.. ..+|++.. +|+. .+.+|+++-+.++|.++.+...+.
T Consensus 58 ~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~ 137 (218)
T PRK13255 58 QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERY 137 (218)
T ss_pred CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHH
Confidence 4778999998 556665421 35677655 7763 235899999999999999999999
Q ss_pred HHHHhhhhCCCCCCCCcchhhhhhhhhhcCCCc--cCCHHHHHHHHHhCCCeeeEEE
Q 043665 65 LKKKCEESIPSNDEGRKTQLCFDLLMATFLNGK--EGSVYDWKKLFLAAGFSHYKIT 119 (132)
Q Consensus 65 L~~~~~~al~~~g~~~~~~~~~dl~m~~~~~g~--~rt~~e~~~ll~~aGf~~~~~~ 119 (132)
++ ++.++|+|||-.--....++-. ..+|. ..|.+|+.+++.. +|.+..+.
T Consensus 138 ~~-~l~~lL~pgG~~~l~~~~~~~~---~~~gPp~~~~~~el~~~~~~-~~~i~~~~ 189 (218)
T PRK13255 138 VQ-QLAALLPAGCRGLLVTLDYPQE---ELAGPPFSVSDEEVEALYAG-CFEIELLE 189 (218)
T ss_pred HH-HHHHHcCCCCeEEEEEEEeCCc---cCCCCCCCCCHHHHHHHhcC-CceEEEee
Confidence 99 9999999997200000000000 01222 4789999999963 26665543
No 88
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=96.08 E-value=0.019 Score=43.78 Aligned_cols=105 Identities=10% Similarity=0.032 Sum_probs=70.8
Q ss_pred CeEEEeec-hhHHhhhcC--------CCC----eEEEe-ccc-cCCCceEEEehhhhcCCChHHHHHHHHHHhhhhCCCC
Q 043665 12 IKCIVLIC-LLWWIIWWG--------TNN----LEFFL-EFE-AIPPANVVLLKWILHDWSDEESLRYLKKKCEESIPSN 76 (132)
Q Consensus 12 l~~~v~Dl-p~v~~~a~~--------~~r----i~~~~-~~~-~~P~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~ 76 (132)
..++.+|. +..++.|++ ..+ +++.. --+ ..+.||+++.+-|+|+..| -..+|+ .+.+.|+|+
T Consensus 112 a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsevleHV~d--p~~~l~-~l~~~lkP~ 188 (282)
T KOG1270|consen 112 AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEVLEHVKD--PQEFLN-CLSALLKPN 188 (282)
T ss_pred CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHHHHHHhC--HHHHHH-HHHHHhCCC
Confidence 57888998 668888875 333 44444 333 2345999999999999977 468999 999999999
Q ss_pred CC-------C---Ccc-hhhhh-hhhhhc-CC----CccCCHHHHHHHHHhCCCeeeEEE
Q 043665 77 DE-------G---RKT-QLCFD-LLMATF-LN----GKEGSVYDWKKLFLAAGFSHYKIT 119 (132)
Q Consensus 77 g~-------~---~~~-~~~~d-l~m~~~-~~----g~~rt~~e~~~ll~~aGf~~~~~~ 119 (132)
|. . +.. ...++ ...... .| -+-.+++|...+++.+|+++..+.
T Consensus 189 G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~v~ 248 (282)
T KOG1270|consen 189 GRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDVV 248 (282)
T ss_pred CceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhhhh
Confidence 82 0 111 11111 111111 12 335889999999999999987764
No 89
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.04 E-value=0.049 Score=41.55 Aligned_cols=113 Identities=12% Similarity=0.074 Sum_probs=71.7
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC-------CCCeEEEe--ccccCC--CceEEEeh-------------hhhcCC
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG-------TNNLEFFL--EFEAIP--PANVVLLK-------------WILHDW 56 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~--~~~~~P--~~D~~ll~-------------~vlh~~ 56 (132)
+..++..+|+.+++.+|. |..++.++. .+|++++. ++++++ ++|+++.. .+++..
T Consensus 129 ~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~e 208 (284)
T TIGR00536 129 ALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDEEDLADLPNVVRFE 208 (284)
T ss_pred HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCcchhhcCCcccccC
Confidence 467888899999999998 778887765 35699887 777665 48998874 233322
Q ss_pred Ch----------HHHHHHHHHHhhhhCCCCCCCCcchhhhhhhhhhcCCCccCCHHHHHHHHH-hCCCeeeEEE-ecCCc
Q 043665 57 SD----------EESLRYLKKKCEESIPSNDEGRKTQLCFDLLMATFLNGKEGSVYDWKKLFL-AAGFSHYKIT-PNLGL 124 (132)
Q Consensus 57 ~d----------e~~~~iL~~~~~~al~~~g~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~-~aGf~~~~~~-~~~~~ 124 (132)
|. +...++++ ++.+.|+|||- ++...+ ....+...+++. +.||..+++. +..|.
T Consensus 209 P~~AL~gg~dgl~~~~~ii~-~a~~~L~~gG~-----------l~~e~g--~~q~~~~~~~~~~~~~~~~~~~~~D~~g~ 274 (284)
T TIGR00536 209 PLLALVGGDDGLNILRQIIE-LAPDYLKPNGF-----------LVCEIG--NWQQKSLKELLRIKFTWYDVENGRDLNGK 274 (284)
T ss_pred cHHHhcCCCcHHHHHHHHHH-HHHHhccCCCE-----------EEEEEC--ccHHHHHHHHHHhcCCCceeEEecCCCCC
Confidence 21 24567788 88888888861 011011 122446777777 4688765554 44454
Q ss_pred ceEE
Q 043665 125 WSLI 128 (132)
Q Consensus 125 ~~~i 128 (132)
.-++
T Consensus 275 ~R~~ 278 (284)
T TIGR00536 275 ERVV 278 (284)
T ss_pred ceEE
Confidence 3333
No 90
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=95.82 E-value=0.066 Score=39.57 Aligned_cols=105 Identities=12% Similarity=0.100 Sum_probs=71.2
Q ss_pred CCeEEEeec-hhHHhhhcC------------------CCCeEEEe--ccccC----CCceEEEehhhhcCCChHHHHHHH
Q 043665 11 DIKCIVLIC-LLWWIIWWG------------------TNNLEFFL--EFEAI----PPANVVLLKWILHDWSDEESLRYL 65 (132)
Q Consensus 11 ~l~~~v~Dl-p~v~~~a~~------------------~~ri~~~~--~~~~~----P~~D~~ll~~vlh~~~de~~~~iL 65 (132)
+.+++.+|+ |..++.+.+ .++|++.. ||+-- .++|+++=+..|+.++.+...+.-
T Consensus 59 G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya 138 (218)
T PF05724_consen 59 GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYA 138 (218)
T ss_dssp TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHH
T ss_pred CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHH
Confidence 568999999 566766511 35788887 88721 249999999999999999999999
Q ss_pred HHHhhhhCCCCCCCCcchhhhhhhhhhcCCCc--cCCHHHHHHHHHhCCCeeeEEEe
Q 043665 66 KKKCEESIPSNDEGRKTQLCFDLLMATFLNGK--EGSVYDWKKLFLAAGFSHYKITP 120 (132)
Q Consensus 66 ~~~~~~al~~~g~~~~~~~~~dl~m~~~~~g~--~rt~~e~~~ll~~aGf~~~~~~~ 120 (132)
+ ++++.|+|||..--....++..- ..|. ..+.+|+++++. .+|++..+..
T Consensus 139 ~-~l~~ll~p~g~~lLi~l~~~~~~---~~GPPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 139 Q-QLASLLKPGGRGLLITLEYPQGE---MEGPPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp H-HHHHCEEEEEEEEEEEEES-CSC---SSSSS----HHHHHHHHT-TTEEEEEEEE
T ss_pred H-HHHHHhCCCCcEEEEEEEcCCcC---CCCcCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 9 99999999973000000111110 1222 467899999999 8998876643
No 91
>PRK01581 speE spermidine synthase; Validated
Probab=95.81 E-value=0.032 Score=44.51 Aligned_cols=114 Identities=9% Similarity=0.080 Sum_probs=68.3
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC-------------CCCeEEEe-----ccccCC-CceEEEehhhhcC----CC
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG-------------TNNLEFFL-----EFEAIP-PANVVLLKWILHD----WS 57 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-------------~~ri~~~~-----~~~~~P-~~D~~ll~~vlh~----~~ 57 (132)
+..+++..|..+++++|+ |.+++.|+. .+|++++- +....+ .+|+|++-- -.. -+
T Consensus 165 lrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl-~DP~~~~~~ 243 (374)
T PRK01581 165 LREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDF-PDPATELLS 243 (374)
T ss_pred HHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcC-CCccccchh
Confidence 455665334568999999 788888873 46888775 333333 499999852 110 11
Q ss_pred hHHHHHHHHHHhhhhCCCCCC-----CCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEE---ecCC-cceEE
Q 043665 58 DEESLRYLKKKCEESIPSNDE-----GRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKIT---PNLG-LWSLI 128 (132)
Q Consensus 58 de~~~~iL~~~~~~al~~~g~-----~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~---~~~~-~~~~i 128 (132)
.-.....++ .|++.|+|||= .+... ..+. .....+.++++||.+.... |..+ .++..
T Consensus 244 ~LyT~EFy~-~~~~~LkPgGV~V~Qs~sp~~-~~~~------------~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~ 309 (374)
T PRK01581 244 TLYTSELFA-RIATFLTEDGAFVCQSNSPAD-APLV------------YWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFH 309 (374)
T ss_pred hhhHHHHHH-HHHHhcCCCcEEEEecCChhh-hHHH------------HHHHHHHHHHhCCceEEEEEecCCCCCceEEE
Confidence 123467899 99999999981 11100 0011 1236788999999876543 3333 35555
Q ss_pred EE
Q 043665 129 EA 130 (132)
Q Consensus 129 e~ 130 (132)
-+
T Consensus 310 ~a 311 (374)
T PRK01581 310 IA 311 (374)
T ss_pred EE
Confidence 44
No 92
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=95.81 E-value=0.045 Score=39.50 Aligned_cols=110 Identities=14% Similarity=0.027 Sum_probs=72.0
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC------CCCeEEEe--ccc-cCC-CceEEEehhhhcCCChHHHHHHHHHHhh
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG------TNNLEFFL--EFE-AIP-PANVVLLKWILHDWSDEESLRYLKKKCE 70 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~-~~P-~~D~~ll~~vlh~~~de~~~~iL~~~~~ 70 (132)
+..+++++|+.+++.+|. +..++.+++ .++++++. ..+ +.. .+|++++..+ . ....+++ .++
T Consensus 60 al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-~-----~~~~~l~-~~~ 132 (187)
T PRK00107 60 GIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-A-----SLSDLVE-LCL 132 (187)
T ss_pred HHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-c-----CHHHHHH-HHH
Confidence 456778899999999999 677777764 33588877 333 123 4999998652 2 2456888 999
Q ss_pred hhCCCCCCCCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEe--c---CCcceEEEEE
Q 043665 71 ESIPSNDEGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITP--N---LGLWSLIEAY 131 (132)
Q Consensus 71 ~al~~~g~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~--~---~~~~~~ie~~ 131 (132)
+.|+|||-. + +. . + .....++.++.++.|+.+.++.- . .|..+++..+
T Consensus 133 ~~LkpGG~l------v---~~--~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (187)
T PRK00107 133 PLLKPGGRF------L---AL--K-G-RDPEEEIAELPKALGGKVEEVIELTLPGLDGERHLVIIR 185 (187)
T ss_pred HhcCCCeEE------E---EE--e-C-CChHHHHHHHHHhcCceEeeeEEEecCCCCCcEEEEEEe
Confidence 999999720 0 00 0 0 02456788888888999876543 2 2344555444
No 93
>PHA03411 putative methyltransferase; Provisional
Probab=95.80 E-value=0.08 Score=40.70 Aligned_cols=108 Identities=10% Similarity=-0.013 Sum_probs=64.9
Q ss_pred HHHHHHCCCCeEEEeec-hhHHhhhcC-CCCeEEEe--ccccC-C-CceEEEehhhhcCCChHHHHHHHHH---------
Q 043665 3 RAIATAFPDIKCIVLIC-LLWWIIWWG-TNNLEFFL--EFEAI-P-PANVVLLKWILHDWSDEESLRYLKK--------- 67 (132)
Q Consensus 3 ~~l~~~~P~l~~~v~Dl-p~v~~~a~~-~~ri~~~~--~~~~~-P-~~D~~ll~~vlh~~~de~~~~iL~~--------- 67 (132)
..++++.+..+++.+|+ |..++.++. ..+++++. +++.. + .+|+++..--.+..+.++....++-
T Consensus 80 l~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~ 159 (279)
T PHA03411 80 FCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKV 159 (279)
T ss_pred HHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhhhhhhhhccCcccccc
Confidence 45566777889999998 778887776 45777776 66533 2 4999999766666555444433330
Q ss_pred --------HhhhhCCCCCCCCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeee
Q 043665 68 --------KCEESIPSNDEGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHY 116 (132)
Q Consensus 68 --------~~~~al~~~g~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~ 116 (132)
.....|+|+|. ....++-. -.=...-+.+||+++++++||...
T Consensus 160 l~~~~~l~~v~~~L~p~G~---~~~~yss~---~~y~~sl~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 160 MTLGQKFADVGYFIVPTGS---AGFAYSGR---PYYDGTMKSNKYLKWSKQTGLVTY 210 (279)
T ss_pred ccHHHHHhhhHheecCCce---EEEEEecc---ccccccCCHHHHHHHHHhcCcEec
Confidence 33334444431 00000000 000223568999999999999753
No 94
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=95.73 E-value=0.25 Score=36.97 Aligned_cols=102 Identities=13% Similarity=0.004 Sum_probs=62.6
Q ss_pred CCCCeEEEeec-hhHHhhhcC---CCCeE-EEeccccCCCceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCCCCCcch
Q 043665 9 FPDIKCIVLIC-LLWWIIWWG---TNNLE-FFLEFEAIPPANVVLLKWILHDWSDEESLRYLKKKCEESIPSNDEGRKTQ 83 (132)
Q Consensus 9 ~P~l~~~v~Dl-p~v~~~a~~---~~ri~-~~~~~~~~P~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g~~~~~~ 83 (132)
...-+++.+|. |..++.+++ ...+. .+.+...-..+|+++.. +. .+....+++ ++.+.|+|||-.-
T Consensus 140 ~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvan-i~----~~~~~~l~~-~~~~~LkpgG~li--- 210 (250)
T PRK00517 140 LGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVAN-IL----ANPLLELAP-DLARLLKPGGRLI--- 210 (250)
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEc-Cc----HHHHHHHHH-HHHHhcCCCcEEE---
Confidence 33336999998 777787765 22221 11111111158988763 32 344567888 9999999997210
Q ss_pred hhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEecCCcceEE
Q 043665 84 LCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITPNLGLWSLI 128 (132)
Q Consensus 84 ~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~i 128 (132)
+ .+-.....+++.+.+++.||++.++...++..+++
T Consensus 211 --l-------sgi~~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~~~ 246 (250)
T PRK00517 211 --L-------SGILEEQADEVLEAYEEAGFTLDEVLERGEWVALV 246 (250)
T ss_pred --E-------EECcHhhHHHHHHHHHHCCCEEEEEEEeCCEEEEE
Confidence 0 00011246788999999999999887776555544
No 95
>PTZ00146 fibrillarin; Provisional
Probab=95.67 E-value=0.38 Score=37.26 Aligned_cols=117 Identities=6% Similarity=-0.041 Sum_probs=63.6
Q ss_pred HHHHHC-CCCeEEEeechh-----HHhhhcCCCCeEEEe--cccc------CCCceEEEehhhhcCCChHHHHHHHHHHh
Q 043665 4 AIATAF-PDIKCIVLICLL-----WWIIWWGTNNLEFFL--EFEA------IPPANVVLLKWILHDWSDEESLRYLKKKC 69 (132)
Q Consensus 4 ~l~~~~-P~l~~~v~Dlp~-----v~~~a~~~~ri~~~~--~~~~------~P~~D~~ll~~vlh~~~de~~~~iL~~~~ 69 (132)
.++... |.=+++.+|+.+ .++.+....+|.++. ...+ .+.+|++++... ..++...++. ++
T Consensus 149 ~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva----~pdq~~il~~-na 223 (293)
T PTZ00146 149 HVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVA----QPDQARIVAL-NA 223 (293)
T ss_pred HHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCC----CcchHHHHHH-HH
Confidence 344433 344788888753 344444445666554 4332 234899977653 2234556667 88
Q ss_pred hhhCCCCCCC--CcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEecCC---cceEEEE
Q 043665 70 EESIPSNDEG--RKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITPNLG---LWSLIEA 130 (132)
Q Consensus 70 ~~al~~~g~~--~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~---~~~~ie~ 130 (132)
...|+|+|.. .......|.. ..-.++=.+|. ++|+++||+..+...+.. .++++.+
T Consensus 224 ~r~LKpGG~~vI~ika~~id~g----~~pe~~f~~ev-~~L~~~GF~~~e~v~L~Py~~~h~~v~~ 284 (293)
T PTZ00146 224 QYFLKNGGHFIISIKANCIDST----AKPEVVFASEV-QKLKKEGLKPKEQLTLEPFERDHAVVIG 284 (293)
T ss_pred HHhccCCCEEEEEEeccccccC----CCHHHHHHHHH-HHHHHcCCceEEEEecCCccCCcEEEEE
Confidence 9999999821 0001111111 00111111344 889999999888776643 4566654
No 96
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=95.54 E-value=0.037 Score=40.17 Aligned_cols=75 Identities=16% Similarity=0.045 Sum_probs=52.6
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC------CCCeEEEe--ccc--c--CC-C-ceEEEehhhhcCCC------hHH
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG------TNNLEFFL--EFE--A--IP-P-ANVVLLKWILHDWS------DEE 60 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~--~--~P-~-~D~~ll~~vlh~~~------de~ 60 (132)
+..+++.+|+.+++.+|. |..++.+++ .++++++. +.+ + ++ + +|++++....+... ...
T Consensus 55 ~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~ 134 (202)
T PRK00121 55 LVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLV 134 (202)
T ss_pred HHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccC
Confidence 456788899999999998 778877764 35788887 423 2 43 3 89998754332111 112
Q ss_pred HHHHHHHHhhhhCCCCC
Q 043665 61 SLRYLKKKCEESIPSND 77 (132)
Q Consensus 61 ~~~iL~~~~~~al~~~g 77 (132)
...+|+ ++++.|+|||
T Consensus 135 ~~~~l~-~i~~~LkpgG 150 (202)
T PRK00121 135 QPEFLA-LYARKLKPGG 150 (202)
T ss_pred CHHHHH-HHHHHcCCCC
Confidence 467899 9999999998
No 97
>PLN02366 spermidine synthase
Probab=95.50 E-value=0.073 Score=41.42 Aligned_cols=74 Identities=5% Similarity=0.022 Sum_probs=49.3
Q ss_pred HHHHHHHCCC-CeEEEeec-hhHHhhhcC----------CCCeEEEe--c---cccCC--CceEEEehhhhcCCChH--H
Q 043665 2 ARAIATAFPD-IKCIVLIC-LLWWIIWWG----------TNNLEFFL--E---FEAIP--PANVVLLKWILHDWSDE--E 60 (132)
Q Consensus 2 ~~~l~~~~P~-l~~~v~Dl-p~v~~~a~~----------~~ri~~~~--~---~~~~P--~~D~~ll~~vlh~~~de--~ 60 (132)
+..++ ++|. .+++++|+ |.|++.+++ .+|++++. . .+..+ .+|+|++-..-+.-+.. -
T Consensus 106 ~rell-k~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~ 184 (308)
T PLN02366 106 LREIA-RHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELF 184 (308)
T ss_pred HHHHH-hCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhh
Confidence 44555 5676 57899998 558888765 35899887 3 34443 49999873211111111 2
Q ss_pred HHHHHHHHhhhhCCCCC
Q 043665 61 SLRYLKKKCEESIPSND 77 (132)
Q Consensus 61 ~~~iL~~~~~~al~~~g 77 (132)
..+.++ .+++.|+|||
T Consensus 185 t~ef~~-~~~~~L~pgG 200 (308)
T PLN02366 185 EKPFFE-SVARALRPGG 200 (308)
T ss_pred HHHHHH-HHHHhcCCCc
Confidence 467899 9999999998
No 98
>PRK00811 spermidine synthase; Provisional
Probab=95.50 E-value=0.067 Score=40.94 Aligned_cols=75 Identities=8% Similarity=0.064 Sum_probs=49.3
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC-----------CCCeEEEe--cc---ccCC-CceEEEehhhhcCCChH--HH
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG-----------TNNLEFFL--EF---EAIP-PANVVLLKWILHDWSDE--ES 61 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-----------~~ri~~~~--~~---~~~P-~~D~~ll~~vlh~~~de--~~ 61 (132)
+..+++..+..+++++|+ |.+++.+++ .+|++++. .. ..-+ .+|+|++--.-+.-+.+ ..
T Consensus 91 ~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t 170 (283)
T PRK00811 91 LREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPVGPAEGLFT 170 (283)
T ss_pred HHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCCCCCCchhhhhH
Confidence 345554334458999999 888888874 35888776 32 2223 49999984322222222 14
Q ss_pred HHHHHHHhhhhCCCCC
Q 043665 62 LRYLKKKCEESIPSND 77 (132)
Q Consensus 62 ~~iL~~~~~~al~~~g 77 (132)
.++++ .+++.|+|||
T Consensus 171 ~ef~~-~~~~~L~~gG 185 (283)
T PRK00811 171 KEFYE-NCKRALKEDG 185 (283)
T ss_pred HHHHH-HHHHhcCCCc
Confidence 67899 9999999999
No 99
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=95.44 E-value=0.041 Score=42.35 Aligned_cols=70 Identities=10% Similarity=0.180 Sum_probs=52.9
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC----------CCCeEEEe-----ccccCC-CceEEEehhhhcCCChH-----
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG----------TNNLEFFL-----EFEAIP-PANVVLLKWILHDWSDE----- 59 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~----------~~ri~~~~-----~~~~~P-~~D~~ll~~vlh~~~de----- 59 (132)
+.++++-.|.-+++++|+ |.|++.+++ .+|++.+- +....+ .+|+|++ |-.|.
T Consensus 91 lRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~-----D~tdp~gp~~ 165 (282)
T COG0421 91 LREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV-----DSTDPVGPAE 165 (282)
T ss_pred HHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE-----cCCCCCCccc
Confidence 566776666668999999 889999885 37888776 445455 5999887 44443
Q ss_pred --HHHHHHHHHhhhhCCCCC
Q 043665 60 --ESLRYLKKKCEESIPSND 77 (132)
Q Consensus 60 --~~~~iL~~~~~~al~~~g 77 (132)
-.....+ .|+++|+++|
T Consensus 166 ~Lft~eFy~-~~~~~L~~~G 184 (282)
T COG0421 166 ALFTEEFYE-GCRRALKEDG 184 (282)
T ss_pred ccCCHHHHH-HHHHhcCCCc
Confidence 1368899 9999999999
No 100
>PRK00536 speE spermidine synthase; Provisional
Probab=95.25 E-value=0.054 Score=41.25 Aligned_cols=66 Identities=5% Similarity=0.019 Sum_probs=48.6
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC----------CCCeEEEe-ccccC-CCceEEEehhhhcCCChHHHHHHHHHH
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG----------TNNLEFFL-EFEAI-PPANVVLLKWILHDWSDEESLRYLKKK 68 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~----------~~ri~~~~-~~~~~-P~~D~~ll~~vlh~~~de~~~~iL~~~ 68 (132)
++++++ ||. +++.+|+ +.|++.+++ .+|++++. +-+.- ..+|+|+.-.- .+ ....+ .
T Consensus 87 ~REvLk-h~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIvDs~----~~---~~fy~-~ 156 (262)
T PRK00536 87 AHQLFK-YDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQE----PD---IHKID-G 156 (262)
T ss_pred HHHHHC-cCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEEcCC----CC---hHHHH-H
Confidence 456664 786 9999999 778888775 68999988 43323 24999997431 22 45668 8
Q ss_pred hhhhCCCCC
Q 043665 69 CEESIPSND 77 (132)
Q Consensus 69 ~~~al~~~g 77 (132)
++++|+|||
T Consensus 157 ~~~~L~~~G 165 (262)
T PRK00536 157 LKRMLKEDG 165 (262)
T ss_pred HHHhcCCCc
Confidence 899999999
No 101
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=95.23 E-value=0.34 Score=37.93 Aligned_cols=75 Identities=9% Similarity=0.033 Sum_probs=52.8
Q ss_pred HHHHHHHCCCCeEEEeechh-HHhhhcC------CCCeEEEe----cccc---CC------C-ceEEEehhhhcCCChHH
Q 043665 2 ARAIATAFPDIKCIVLICLL-WWIIWWG------TNNLEFFL----EFEA---IP------P-ANVVLLKWILHDWSDEE 60 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dlp~-v~~~a~~------~~ri~~~~----~~~~---~P------~-~D~~ll~~vlh~~~de~ 60 (132)
+.+|.++....+.+-+|+.. .++.+.. .+.+++.+ |.+. +| . --++++.+.+.++++++
T Consensus 95 L~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~e 174 (319)
T TIGR03439 95 LEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPE 174 (319)
T ss_pred HHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHH
Confidence 34455455567899999843 4444432 35677755 4432 21 1 35677789999999999
Q ss_pred HHHHHHHHhhh-hCCCCC
Q 043665 61 SLRYLKKKCEE-SIPSND 77 (132)
Q Consensus 61 ~~~iL~~~~~~-al~~~g 77 (132)
+..+|+ ++++ .|.||+
T Consensus 175 a~~fL~-~~~~~~l~~~d 191 (319)
T TIGR03439 175 AAAFLA-GFLATALSPSD 191 (319)
T ss_pred HHHHHH-HHHHhhCCCCC
Confidence 999999 9999 999988
No 102
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=95.11 E-value=0.12 Score=38.49 Aligned_cols=102 Identities=15% Similarity=0.087 Sum_probs=68.6
Q ss_pred CCeEEEeec-hhHHhhhcC------------------CCCeEEEe--cccc--C----CCceEEEehhhhcCCChHHHHH
Q 043665 11 DIKCIVLIC-LLWWIIWWG------------------TNNLEFFL--EFEA--I----PPANVVLLKWILHDWSDEESLR 63 (132)
Q Consensus 11 ~l~~~v~Dl-p~v~~~a~~------------------~~ri~~~~--~~~~--~----P~~D~~ll~~vlh~~~de~~~~ 63 (132)
+.+++.+|+ |..++.+.+ ..+|++.. ||+- . ..+|+|+=+.+++.++++...+
T Consensus 65 G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~ 144 (226)
T PRK13256 65 GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTN 144 (226)
T ss_pred CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHH
Confidence 567999999 556665311 45788777 8873 1 2489999999999999999999
Q ss_pred HHHHHhhhhCCCCCCCCcchhhhhhhhhhcCCCcc--CCHHHHHHHHHhCCCeeeEE
Q 043665 64 YLKKKCEESIPSNDEGRKTQLCFDLLMATFLNGKE--GSVYDWKKLFLAAGFSHYKI 118 (132)
Q Consensus 64 iL~~~~~~al~~~g~~~~~~~~~dl~m~~~~~g~~--rt~~e~~~ll~~aGf~~~~~ 118 (132)
..+ ++.+.|+|||..--.....+-. .+|.- -|.+|+++++.. +|.+..+
T Consensus 145 Y~~-~l~~lL~pgg~llll~~~~~~~----~~GPPf~v~~~e~~~lf~~-~~~i~~l 195 (226)
T PRK13256 145 YAK-MMLEVCSNNTQILLLVMEHDKK----SQTPPYSVTQAELIKNFSA-KIKFELI 195 (226)
T ss_pred HHH-HHHHHhCCCcEEEEEEEecCCC----CCCCCCcCCHHHHHHhccC-CceEEEe
Confidence 999 9999999998311000001110 13332 467899998864 3444444
No 103
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=94.92 E-value=0.054 Score=39.43 Aligned_cols=98 Identities=4% Similarity=-0.065 Sum_probs=60.8
Q ss_pred CCeEEEeec-hhHHhhhcC---CC--CeEEEe--ccc-cCCC-ceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCC---
Q 043665 11 DIKCIVLIC-LLWWIIWWG---TN--NLEFFL--EFE-AIPP-ANVVLLKWILHDWSDEESLRYLKKKCEESIPSND--- 77 (132)
Q Consensus 11 ~l~~~v~Dl-p~v~~~a~~---~~--ri~~~~--~~~-~~P~-~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g--- 77 (132)
+..++.+|. +..++.+.. .. .|+... +.+ .+++ +|+|+..-|+|..+.+....+++ ++.++++|||
T Consensus 52 G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~I~st~v~~fL~~~~~~~i~~-~m~~~~~pGG~~l 130 (192)
T PF03848_consen 52 GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDFIVSTVVFMFLQRELRPQIIE-NMKAATKPGGYNL 130 (192)
T ss_dssp T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEEEEEESSGGGS-GGGHHHHHH-HHHHTEEEEEEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCEEEEEEEeccCCHHHHHHHHH-HHHhhcCCcEEEE
Confidence 667888887 445554443 22 355554 444 4554 99999989999999999999999 9999999999
Q ss_pred -----CCCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEE
Q 043665 78 -----EGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKI 118 (132)
Q Consensus 78 -----~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 118 (132)
+.+......+ .......+|+...+. ||++.+.
T Consensus 131 i~~~~~~~d~p~~~~-------~~f~~~~~EL~~~y~--dW~il~y 167 (192)
T PF03848_consen 131 IVTFMETPDYPCPSP-------FPFLLKPGELREYYA--DWEILKY 167 (192)
T ss_dssp EEEEB--SSS--SS---------S--B-TTHHHHHTT--TSEEEEE
T ss_pred EEEecccCCCCCCCC-------CCcccCHHHHHHHhC--CCeEEEE
Confidence 1111111111 122356778888887 6887653
No 104
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=94.92 E-value=0.097 Score=39.68 Aligned_cols=74 Identities=7% Similarity=0.020 Sum_probs=49.0
Q ss_pred HHHHHHCCCCeEEEeec-hhHHhhhcC----------CCCeEEEe--ccc---cCC-CceEEEehhhhcCCChHH--HHH
Q 043665 3 RAIATAFPDIKCIVLIC-LLWWIIWWG----------TNNLEFFL--EFE---AIP-PANVVLLKWILHDWSDEE--SLR 63 (132)
Q Consensus 3 ~~l~~~~P~l~~~v~Dl-p~v~~~a~~----------~~ri~~~~--~~~---~~P-~~D~~ll~~vlh~~~de~--~~~ 63 (132)
..+++..+..+++++|+ |.+++.+++ .+|++++. .++ ..+ .+|+|+....-+.-+... ..+
T Consensus 88 ~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~e 167 (270)
T TIGR00417 88 REVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPVGPAETLFTKE 167 (270)
T ss_pred HHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCCCcccchhHHH
Confidence 45555444667999998 677777764 35777665 332 234 499999865432222222 468
Q ss_pred HHHHHhhhhCCCCC
Q 043665 64 YLKKKCEESIPSND 77 (132)
Q Consensus 64 iL~~~~~~al~~~g 77 (132)
.++ ++++.|+|||
T Consensus 168 f~~-~~~~~L~pgG 180 (270)
T TIGR00417 168 FYE-LLKKALNEDG 180 (270)
T ss_pred HHH-HHHHHhCCCc
Confidence 889 9999999998
No 105
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=94.90 E-value=0.94 Score=36.89 Aligned_cols=49 Identities=16% Similarity=0.072 Sum_probs=37.9
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC-----CCCeEEEe--cccc-CC---CceEEEeh
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG-----TNNLEFFL--EFEA-IP---PANVVLLK 50 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-----~~ri~~~~--~~~~-~P---~~D~~ll~ 50 (132)
+..+++++|+.+++.+|. |..++.+++ ..|++++. ++++ .| .+|++++.
T Consensus 266 aiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSN 326 (423)
T PRK14966 266 AVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSN 326 (423)
T ss_pred HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEEC
Confidence 456788899999999999 888888875 45788887 6653 33 38999984
No 106
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=94.74 E-value=0.026 Score=40.65 Aligned_cols=74 Identities=16% Similarity=0.223 Sum_probs=51.2
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC------CCCeEEEe--ccc----cCC--CceEEEehhhhcCCChHH------
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG------TNNLEFFL--EFE----AIP--PANVVLLKWILHDWSDEE------ 60 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~----~~P--~~D~~ll~~vlh~~~de~------ 60 (132)
+..+++++|+..++.+|. +..++.+.. .++++++. +.+ ..| ..|.+++..- ..|+...
T Consensus 31 ~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p-dpw~k~~h~~~r~ 109 (194)
T TIGR00091 31 LIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP-DPWPKKRHNKRRI 109 (194)
T ss_pred HHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC-CcCCCCCcccccc
Confidence 467889999999999999 667776654 35788886 332 134 2777765432 2243321
Q ss_pred -HHHHHHHHhhhhCCCCC
Q 043665 61 -SLRYLKKKCEESIPSND 77 (132)
Q Consensus 61 -~~~iL~~~~~~al~~~g 77 (132)
...+++ .+++.|+|||
T Consensus 110 ~~~~~l~-~~~r~LkpgG 126 (194)
T TIGR00091 110 TQPHFLK-EYANVLKKGG 126 (194)
T ss_pred CCHHHHH-HHHHHhCCCC
Confidence 146899 9999999999
No 107
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=94.71 E-value=0.083 Score=34.20 Aligned_cols=74 Identities=8% Similarity=-0.016 Sum_probs=52.6
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC-------CCCeEEEe--ccc---cCC--CceEEEehhhhcCCCh------HH
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG-------TNNLEFFL--EFE---AIP--PANVVLLKWILHDWSD------EE 60 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~--~~~---~~P--~~D~~ll~~vlh~~~d------e~ 60 (132)
+..+++.. ..+++.+|+ |..++.++. .+|++++. +++ ..+ ++|++++.--.+.... +.
T Consensus 15 ~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~ 93 (117)
T PF13659_consen 15 LLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRL 93 (117)
T ss_dssp HHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCH
T ss_pred HHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCccccccchhhHHH
Confidence 45566777 889999999 778787765 57899888 554 243 4999999766664321 23
Q ss_pred HHHHHHHHhhhhCCCCC
Q 043665 61 SLRYLKKKCEESIPSND 77 (132)
Q Consensus 61 ~~~iL~~~~~~al~~~g 77 (132)
...+++ ++.+.|+|||
T Consensus 94 ~~~~~~-~~~~~L~~gG 109 (117)
T PF13659_consen 94 YSRFLE-AAARLLKPGG 109 (117)
T ss_dssp HHHHHH-HHHHHEEEEE
T ss_pred HHHHHH-HHHHHcCCCe
Confidence 468899 9999999987
No 108
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=94.43 E-value=0.55 Score=35.56 Aligned_cols=117 Identities=8% Similarity=-0.013 Sum_probs=71.6
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC-------CCCeEEEe-----ccccCC--CceEEEehhhhcCCChHH------
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG-------TNNLEFFL-----EFEAIP--PANVVLLKWILHDWSDEE------ 60 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~-----~~~~~P--~~D~~ll~~vlh~~~de~------ 60 (132)
...+++++++.+.+.+++ +...+.|+. .+||+++. +....+ .+|+|++.==.+.-++..
T Consensus 59 ~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~ 138 (248)
T COG4123 59 GLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLR 138 (248)
T ss_pred HHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhh
Confidence 456788889999999999 556666664 78999998 333333 389998875555444431
Q ss_pred ----------HHHHHHHHhhhhCCCCCCCCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEec---CC---c
Q 043665 61 ----------SLRYLKKKCEESIPSNDEGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITPN---LG---L 124 (132)
Q Consensus 61 ----------~~~iL~~~~~~al~~~g~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~---~~---~ 124 (132)
-..+++ .++..|+++|... ++ .+.=...|+.+++++.+|...++..+ .+ .
T Consensus 139 ~~Ar~e~~~~le~~i~-~a~~~lk~~G~l~----------~V---~r~erl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~ 204 (248)
T COG4123 139 AIARHEITLDLEDLIR-AAAKLLKPGGRLA----------FV---HRPERLAEIIELLKSYNLEPKRIQFVYPKIGKAAN 204 (248)
T ss_pred hhhhhhhcCCHHHHHH-HHHHHccCCCEEE----------EE---ecHHHHHHHHHHHHhcCCCceEEEEecCCCCCcce
Confidence 124455 5555555555100 00 00012357888899988887776543 22 3
Q ss_pred ceEEEEEC
Q 043665 125 WSLIEAYP 132 (132)
Q Consensus 125 ~~~ie~~p 132 (132)
.-+||+.+
T Consensus 205 ~vLv~~~k 212 (248)
T COG4123 205 RVLVEAIK 212 (248)
T ss_pred EEEEEEec
Confidence 56677653
No 109
>PRK07402 precorrin-6B methylase; Provisional
Probab=94.30 E-value=0.2 Score=35.87 Aligned_cols=69 Identities=12% Similarity=0.043 Sum_probs=48.3
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC------CCCeEEEe--ccc---cC-CCceEEEehhhhcCCChHHHHHHHHHH
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG------TNNLEFFL--EFE---AI-PPANVVLLKWILHDWSDEESLRYLKKK 68 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~---~~-P~~D~~ll~~vlh~~~de~~~~iL~~~ 68 (132)
+..+++..|+.+++.+|+ |..++.+++ .++++++. ..+ .+ +..|.+++. . ......+|+ +
T Consensus 55 ~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~-----~-~~~~~~~l~-~ 127 (196)
T PRK07402 55 PVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE-----G-GRPIKEILQ-A 127 (196)
T ss_pred HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE-----C-CcCHHHHHH-H
Confidence 355677789999999999 888887765 35688776 332 33 235665442 2 234578899 9
Q ss_pred hhhhCCCCC
Q 043665 69 CEESIPSND 77 (132)
Q Consensus 69 ~~~al~~~g 77 (132)
+.+.|+|||
T Consensus 128 ~~~~LkpgG 136 (196)
T PRK07402 128 VWQYLKPGG 136 (196)
T ss_pred HHHhcCCCe
Confidence 999999998
No 110
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=94.29 E-value=0.25 Score=39.77 Aligned_cols=116 Identities=10% Similarity=0.121 Sum_probs=70.8
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC------CCCeEEEe-----ccccCC--CceEEEehhhhcCCChHHH-----H
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG------TNNLEFFL-----EFEAIP--PANVVLLKWILHDWSDEES-----L 62 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~-----~~~~~P--~~D~~ll~~vlh~~~de~~-----~ 62 (132)
+..+++++|+..++.+|+ +..++.+.. -++|.++. +++.+| ..|.+++.. --.|+...- .
T Consensus 137 ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF-PdPW~KkrHRRlv~~ 215 (390)
T PRK14121 137 LLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF-PVPWDKKPHRRVISE 215 (390)
T ss_pred HHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC-CCCccccchhhccHH
Confidence 567899999999999998 556665543 35788776 334566 388888732 223544332 4
Q ss_pred HHHHHHhhhhCCCCCC------CCcc-hhhhhhhh-------hhcCCCccCCHHHHHHHHHhCCCeeeEEE
Q 043665 63 RYLKKKCEESIPSNDE------GRKT-QLCFDLLM-------ATFLNGKEGSVYDWKKLFLAAGFSHYKIT 119 (132)
Q Consensus 63 ~iL~~~~~~al~~~g~------~~~~-~~~~dl~m-------~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 119 (132)
.+|+ .+++.|+|||. .... ....+..+ -...+...+-..+|+.-..+.|-.+.++.
T Consensus 216 ~fL~-e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~~~~~~~~~~i~TkyE~r~~~~G~~Iy~l~ 285 (390)
T PRK14121 216 DFLN-EALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKIEIKKNAQLEVSSKYEDRWKKQNKDIYDLR 285 (390)
T ss_pred HHHH-HHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCceeecccCCCCCCCCHHHHHHHHCCCCEEEEE
Confidence 7899 99999999992 1110 01111100 00011222334688888889998876653
No 111
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=94.24 E-value=0.32 Score=35.25 Aligned_cols=69 Identities=14% Similarity=0.064 Sum_probs=53.8
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC------CCCeEEEe-----ccccCCCceEEEehhhhcCCChHHHHHHHHHHh
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG------TNNLEFFL-----EFEAIPPANVVLLKWILHDWSDEESLRYLKKKC 69 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~-----~~~~~P~~D~~ll~~vlh~~~de~~~~iL~~~~ 69 (132)
.++++...|..+++.+|. +..++..+. .++++.+. .+..+|.+|.+++.-- .....+|+ .+
T Consensus 49 ~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg------~~i~~ile-~~ 121 (187)
T COG2242 49 TIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG------GNIEEILE-AA 121 (187)
T ss_pred HHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC------CCHHHHHH-HH
Confidence 456778899999999997 566665543 68899887 4456667999999654 33578999 99
Q ss_pred hhhCCCCC
Q 043665 70 EESIPSND 77 (132)
Q Consensus 70 ~~al~~~g 77 (132)
.+.|+|||
T Consensus 122 ~~~l~~gg 129 (187)
T COG2242 122 WERLKPGG 129 (187)
T ss_pred HHHcCcCC
Confidence 99999998
No 112
>PRK03612 spermidine synthase; Provisional
Probab=94.23 E-value=0.2 Score=41.69 Aligned_cols=98 Identities=10% Similarity=0.149 Sum_probs=61.4
Q ss_pred HHHHHHHCCC-CeEEEeec-hhHHhhhcC-------------CCCeEEEe--cc---ccCC-CceEEEehhhhcCCCh--
Q 043665 2 ARAIATAFPD-IKCIVLIC-LLWWIIWWG-------------TNNLEFFL--EF---EAIP-PANVVLLKWILHDWSD-- 58 (132)
Q Consensus 2 ~~~l~~~~P~-l~~~v~Dl-p~v~~~a~~-------------~~ri~~~~--~~---~~~P-~~D~~ll~~vlh~~~d-- 58 (132)
+..++ ++|. -+++++|+ |.+++.+++ .+|++++. .+ ...+ ++|+|++..--...++
T Consensus 312 ~~~ll-~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~ 390 (521)
T PRK03612 312 LREVL-KYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALG 390 (521)
T ss_pred HHHHH-hCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcchh
Confidence 34555 4777 78999999 889998875 26888876 33 3334 4999988522111111
Q ss_pred -HHHHHHHHHHhhhhCCCCC----CCCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCC
Q 043665 59 -EESLRYLKKKCEESIPSND----EGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGF 113 (132)
Q Consensus 59 -e~~~~iL~~~~~~al~~~g----~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf 113 (132)
--..++++ ++++.|+||| .... ..++ .....++.+.++++||
T Consensus 391 ~L~t~ef~~-~~~~~L~pgG~lv~~~~~--~~~~----------~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 391 KLYSVEFYR-LLKRRLAPDGLLVVQSTS--PYFA----------PKAFWSIEATLEAAGL 437 (521)
T ss_pred ccchHHHHH-HHHHhcCCCeEEEEecCC--cccc----------hHHHHHHHHHHHHcCC
Confidence 11346889 9999999998 1100 0111 1223467888888888
No 113
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=93.86 E-value=0.18 Score=38.76 Aligned_cols=74 Identities=11% Similarity=0.121 Sum_probs=45.4
Q ss_pred HHHHHHHC-CCCeEEEeec-hhHHhhhcC--------CCCeEEEe--ccc---cCCCceEEEehhhhcCCChHHHHHHHH
Q 043665 2 ARAIATAF-PDIKCIVLIC-LLWWIIWWG--------TNNLEFFL--EFE---AIPPANVVLLKWILHDWSDEESLRYLK 66 (132)
Q Consensus 2 ~~~l~~~~-P~l~~~v~Dl-p~v~~~a~~--------~~ri~~~~--~~~---~~P~~D~~ll~~vlh~~~de~~~~iL~ 66 (132)
++-+++++ ++.+++++|. |..++.++. ..|++|+. ..+ ++-.+|+|++.-.. .-+.+.-.+||.
T Consensus 136 ~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAalV-g~~~e~K~~Il~ 214 (276)
T PF03059_consen 136 SIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAALV-GMDAEPKEEILE 214 (276)
T ss_dssp HHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT--S----SHHHHHH
T ss_pred HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhhc-ccccchHHHHHH
Confidence 34566554 6888999998 777777754 67999998 433 34469999997655 445556789999
Q ss_pred HHhhhhCCCCC
Q 043665 67 KKCEESIPSND 77 (132)
Q Consensus 67 ~~~~~al~~~g 77 (132)
++.+.|+||+
T Consensus 215 -~l~~~m~~ga 224 (276)
T PF03059_consen 215 -HLAKHMAPGA 224 (276)
T ss_dssp -HHHHHS-TTS
T ss_pred -HHHhhCCCCc
Confidence 9999999987
No 114
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=93.67 E-value=0.4 Score=34.46 Aligned_cols=95 Identities=13% Similarity=-0.027 Sum_probs=61.7
Q ss_pred HHHHHH-CCCCeEEEeec-hhHHhhhcC-------CCCeEEEe--ccc---cC-CCceEEEehhhhcCCChHHHHHHHHH
Q 043665 3 RAIATA-FPDIKCIVLIC-LLWWIIWWG-------TNNLEFFL--EFE---AI-PPANVVLLKWILHDWSDEESLRYLKK 67 (132)
Q Consensus 3 ~~l~~~-~P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~--~~~---~~-P~~D~~ll~~vlh~~~de~~~~iL~~ 67 (132)
..+++. .|..+++.+|. |..++.+++ .++++++. +.+ .. +.+|++++.. +.+....+|+
T Consensus 56 ~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~-----~~~~~~~~l~- 129 (198)
T PRK00377 56 VEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG-----GSEKLKEIIS- 129 (198)
T ss_pred HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC-----CcccHHHHHH-
Confidence 445554 46789999999 778887654 35788776 433 23 3499998843 3344578899
Q ss_pred HhhhhCCCCCCCCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCee
Q 043665 68 KCEESIPSNDEGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSH 115 (132)
Q Consensus 68 ~~~~al~~~g~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~ 115 (132)
.+.+.|+|||.. .++.. ..-+..+....|++.||..
T Consensus 130 ~~~~~LkpgG~l-----v~~~~-------~~~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 130 ASWEIIKKGGRI-----VIDAI-------LLETVNNALSALENIGFNL 165 (198)
T ss_pred HHHHHcCCCcEE-----EEEee-------cHHHHHHHHHHHHHcCCCe
Confidence 999999998721 01110 0012467888888899843
No 115
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=93.49 E-value=0.25 Score=37.68 Aligned_cols=77 Identities=17% Similarity=0.067 Sum_probs=49.1
Q ss_pred CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCC--------CC---Ccc----hhhhhhhhhhcCCCccCCHHHHHHH
Q 043665 43 PANVVLLKWILHDWSDEESLRYLKKKCEESIPSND--------EG---RKT----QLCFDLLMATFLNGKEGSVYDWKKL 107 (132)
Q Consensus 43 ~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g--------~~---~~~----~~~~dl~m~~~~~g~~rt~~e~~~l 107 (132)
++|+|-+-|+|.--.+ -..+|+ .++++|+|+| |. -+. ....+-.+=+..+..|=....+.+.
T Consensus 151 ~fDvIscLNvLDRc~~--P~~LL~-~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v 227 (265)
T PF05219_consen 151 KFDVISCLNVLDRCDR--PLTLLR-DIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNV 227 (265)
T ss_pred ceEEEeehhhhhccCC--HHHHHH-HHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHH
Confidence 4999999999976655 378999 9999999999 21 111 1111111111112222233345588
Q ss_pred HHhCCCeeeEEEecC
Q 043665 108 FLAAGFSHYKITPNL 122 (132)
Q Consensus 108 l~~aGf~~~~~~~~~ 122 (132)
|+.+||++.+....+
T Consensus 228 ~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 228 FEPAGFEVERWTRLP 242 (265)
T ss_pred HHhcCCEEEEEeccC
Confidence 999999999987664
No 116
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=93.29 E-value=0.72 Score=34.39 Aligned_cols=117 Identities=17% Similarity=0.080 Sum_probs=71.6
Q ss_pred CCCeEEEeec-hhHHhhhcC------CCCeE-EEe-ccccC---C--CceEEEehhhhcCCChHHHHHHHHHHhhhhCCC
Q 043665 10 PDIKCIVLIC-LLWWIIWWG------TNNLE-FFL-EFEAI---P--PANVVLLKWILHDWSDEESLRYLKKKCEESIPS 75 (132)
Q Consensus 10 P~l~~~v~Dl-p~v~~~a~~------~~ri~-~~~-~~~~~---P--~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~ 75 (132)
|..++|.+|- |.+-+.+.. ...+. |+- --+.+ + .+|+++..-+|.-..| .++.|+ ++++.|+|
T Consensus 98 p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~--~~k~L~-e~~rlLRp 174 (252)
T KOG4300|consen 98 PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSVED--PVKQLN-EVRRLLRP 174 (252)
T ss_pred CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEeccCC--HHHHHH-HHHHhcCC
Confidence 5678899996 556655543 23444 443 22333 3 3999999999986654 799999 99999999
Q ss_pred CC-----CC--Ccc-------hhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEecC--CcceEEEE
Q 043665 76 ND-----EG--RKT-------QLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITPNL--GLWSLIEA 130 (132)
Q Consensus 76 ~g-----~~--~~~-------~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~--~~~~~ie~ 130 (132)
|| +. .+. +...|-.--....|-..|.+-| +.|+.|.|+..+-.... ..+.+|+.
T Consensus 175 gG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd~~-e~Leda~f~~~~~kr~~~~ttw~~V~~ 244 (252)
T KOG4300|consen 175 GGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRDTG-ELLEDAEFSIDSCKRFNFGTTWVIVEP 244 (252)
T ss_pred CcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehhHH-HHhhhcccccchhhcccCCceEEEEec
Confidence 99 21 111 1222221112245666676544 57788999987655443 33444543
No 117
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=93.13 E-value=0.1 Score=39.26 Aligned_cols=75 Identities=9% Similarity=0.080 Sum_probs=48.8
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC----------CCCeEEEe-----ccccCC--CceEEEehhhhcCCChH--HH
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG----------TNNLEFFL-----EFEAIP--PANVVLLKWILHDWSDE--ES 61 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~----------~~ri~~~~-----~~~~~P--~~D~~ll~~vlh~~~de--~~ 61 (132)
+..+++..|..+++++|+ |.|++.++. .+|++++. |.+..+ .+|++++--.=-.-+.. -.
T Consensus 91 ~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t 170 (246)
T PF01564_consen 91 ARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFT 170 (246)
T ss_dssp HHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSS
T ss_pred hhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccC
Confidence 345554333568999999 889998875 46998886 445433 59999872221111111 14
Q ss_pred HHHHHHHhhhhCCCCC
Q 043665 62 LRYLKKKCEESIPSND 77 (132)
Q Consensus 62 ~~iL~~~~~~al~~~g 77 (132)
.+.++ .+++.|+|+|
T Consensus 171 ~ef~~-~~~~~L~~~G 185 (246)
T PF01564_consen 171 REFYQ-LCKRRLKPDG 185 (246)
T ss_dssp HHHHH-HHHHHEEEEE
T ss_pred HHHHH-HHHhhcCCCc
Confidence 68899 9999999987
No 118
>PLN02823 spermine synthase
Probab=92.68 E-value=0.41 Score=37.73 Aligned_cols=75 Identities=11% Similarity=0.062 Sum_probs=47.4
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC----------CCCeEEEe-----ccccCC-CceEEEehhhhcCCChHH----
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG----------TNNLEFFL-----EFEAIP-PANVVLLKWILHDWSDEE---- 60 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~----------~~ri~~~~-----~~~~~P-~~D~~ll~~vlh~~~de~---- 60 (132)
+..+++..+..+++++|+ |.+++.+++ .+|++++. +.+..+ .+|+|++-- -..++...
T Consensus 118 ~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~-~dp~~~~~~~~L 196 (336)
T PLN02823 118 AREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGDL-ADPVEGGPCYQL 196 (336)
T ss_pred HHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEecC-CCccccCcchhh
Confidence 345565445668999999 889998875 36888876 334333 499999852 11111111
Q ss_pred -HHHHHHHHhhhhCCCCC
Q 043665 61 -SLRYLKKKCEESIPSND 77 (132)
Q Consensus 61 -~~~iL~~~~~~al~~~g 77 (132)
..+.+++.+++.|+|||
T Consensus 197 yt~eF~~~~~~~~L~p~G 214 (336)
T PLN02823 197 YTKSFYERIVKPKLNPGG 214 (336)
T ss_pred ccHHHHHHHHHHhcCCCc
Confidence 23455315788999998
No 119
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=92.65 E-value=2.3 Score=32.49 Aligned_cols=96 Identities=14% Similarity=0.021 Sum_probs=58.9
Q ss_pred HCCCCeEEEeec-hhHHhhhcC-------CCCeEEEe-ccc-cCC-CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCC
Q 043665 8 AFPDIKCIVLIC-LLWWIIWWG-------TNNLEFFL-EFE-AIP-PANVVLLKWILHDWSDEESLRYLKKKCEESIPSN 76 (132)
Q Consensus 8 ~~P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~-~~~-~~P-~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~ 76 (132)
+.+.-+++.+|. |..++.+++ .+++.+.. ... ..+ ++|+++..- + -+....+++ ++.+.|+||
T Consensus 179 ~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~-~----~~~l~~ll~-~~~~~Lkpg 252 (288)
T TIGR00406 179 KLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANI-L----AEVIKELYP-QFSRLVKPG 252 (288)
T ss_pred HcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEec-C----HHHHHHHHH-HHHHHcCCC
Confidence 345568999998 667777765 34555444 222 223 499998743 3 233567899 999999999
Q ss_pred CCCCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEecC
Q 043665 77 DEGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITPNL 122 (132)
Q Consensus 77 g~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 122 (132)
|-. .+ .+=.....+++.+.+++. |++.++...+
T Consensus 253 G~l-----i~-------sgi~~~~~~~v~~~~~~~-f~~~~~~~~~ 285 (288)
T TIGR00406 253 GWL-----IL-------SGILETQAQSVCDAYEQG-FTVVEIRQRE 285 (288)
T ss_pred cEE-----EE-------EeCcHhHHHHHHHHHHcc-CceeeEeccC
Confidence 721 00 000113356777878776 8887765543
No 120
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=92.23 E-value=0.14 Score=40.30 Aligned_cols=35 Identities=14% Similarity=0.352 Sum_probs=31.3
Q ss_pred CCceEEEehhhhcC-C-ChHHHHHHHHHHhhhhCCCCC
Q 043665 42 PPANVVLLKWILHD-W-SDEESLRYLKKKCEESIPSND 77 (132)
Q Consensus 42 P~~D~~ll~~vlh~-~-~de~~~~iL~~~~~~al~~~g 77 (132)
|.+|++-+.-++|+ | +.+.+..+|+ |+++.|+|||
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~-Nva~~LkpGG 231 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALR-NVAKCLKPGG 231 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHH-HHHhhcCCCc
Confidence 34999999999999 5 6777899999 9999999999
No 121
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.08 E-value=0.09 Score=37.33 Aligned_cols=34 Identities=15% Similarity=0.342 Sum_probs=32.7
Q ss_pred CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCC
Q 043665 43 PANVVLLKWILHDWSDEESLRYLKKKCEESIPSND 77 (132)
Q Consensus 43 ~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g 77 (132)
.+|+++..||+-++.-++-...|+ .|++.|+|||
T Consensus 47 s~d~iyaeHvlEHlt~~Eg~~alk-echr~Lrp~G 80 (185)
T COG4627 47 SVDAIYAEHVLEHLTYDEGTSALK-ECHRFLRPGG 80 (185)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHH-HHHHHhCcCc
Confidence 399999999999999999999999 9999999999
No 122
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=92.00 E-value=3.1 Score=31.45 Aligned_cols=106 Identities=16% Similarity=0.086 Sum_probs=59.2
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC-----CCCeEEEe--ccccCC----C-ceEEEehhhhcCCChHHHHHHHHHH
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG-----TNNLEFFL--EFEAIP----P-ANVVLLKWILHDWSDEESLRYLKKK 68 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-----~~ri~~~~--~~~~~P----~-~D~~ll~~vlh~~~de~~~~iL~~~ 68 (132)
+.+++-..+.-+++|+|. ...++..+. .-.|+.+- +.+++| + +|+++.--. |+-+-....|. +
T Consensus 58 SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP---yT~~G~~LFls-R 133 (243)
T PF01861_consen 58 SLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP---YTPEGLKLFLS-R 133 (243)
T ss_dssp HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE------SSHHHHHHHHH-H
T ss_pred HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC---CCHHHHHHHHH-H
Confidence 456666778889999999 446665543 22355554 556777 2 898887221 56688888899 9
Q ss_pred hhhhCCCCCCCCcchhhhhhhhhhcCCCccCCHH---HHHHHHHhCCCeeeEEEec
Q 043665 69 CEESIPSNDEGRKTQLCFDLLMATFLNGKEGSVY---DWKKLFLAAGFSHYKITPN 121 (132)
Q Consensus 69 ~~~al~~~g~~~~~~~~~dl~m~~~~~g~~rt~~---e~~~ll~~aGf~~~~~~~~ 121 (132)
..++|+..|. ...+ ..+.++.|.+ ++++.+.+.||.+..+.|-
T Consensus 134 gi~~Lk~~g~----~gy~------~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii~~ 179 (243)
T PF01861_consen 134 GIEALKGEGC----AGYF------GFTHKEASPDKWLEVQRFLLEMGLVITDIIPD 179 (243)
T ss_dssp HHHTB-STT-----EEEE------EE-TTT--HHHHHHHHHHHHTS--EEEEEEEE
T ss_pred HHHHhCCCCc----eEEE------EEecCcCcHHHHHHHHHHHHHCCcCHHHHHhh
Confidence 9999985321 1111 2345556665 4567888999999998763
No 123
>PRK14967 putative methyltransferase; Provisional
Probab=91.66 E-value=4 Score=29.77 Aligned_cols=72 Identities=13% Similarity=-0.062 Sum_probs=44.5
Q ss_pred HHHHHCCCCeEEEeec-hhHHhhhcC-----CCCeEEEe--ccccCC--CceEEEehhhhc-C-------------CC--
Q 043665 4 AIATAFPDIKCIVLIC-LLWWIIWWG-----TNNLEFFL--EFEAIP--PANVVLLKWILH-D-------------WS-- 57 (132)
Q Consensus 4 ~l~~~~P~l~~~v~Dl-p~v~~~a~~-----~~ri~~~~--~~~~~P--~~D~~ll~~vlh-~-------------~~-- 57 (132)
.+++. +..+++.+|+ |..++.++. .-+++++. +++.++ .+|++++.--.+ . |.
T Consensus 53 ~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~ 131 (223)
T PRK14967 53 AAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAG 131 (223)
T ss_pred HHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCCCCCcccccccChhHhhhCC
Confidence 34443 4458999998 566766554 23566666 555444 499999852111 0 11
Q ss_pred ---hHHHHHHHHHHhhhhCCCCC
Q 043665 58 ---DEESLRYLKKKCEESIPSND 77 (132)
Q Consensus 58 ---de~~~~iL~~~~~~al~~~g 77 (132)
.+....+++ ++.+.|++||
T Consensus 132 ~~~~~~~~~~l~-~a~~~Lk~gG 153 (223)
T PRK14967 132 PDGRAVLDRLCD-AAPALLAPGG 153 (223)
T ss_pred CcHHHHHHHHHH-HHHHhcCCCc
Confidence 112456888 8999999999
No 124
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=91.64 E-value=0.94 Score=34.69 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=46.9
Q ss_pred CCCeEEEeechhHHhhh------cCCCCeEEEe---ccc----cCCC---ceEEEehhhhcCCChHHHHHHHHHHhhhhC
Q 043665 10 PDIKCIVLICLLWWIIW------WGTNNLEFFL---EFE----AIPP---ANVVLLKWILHDWSDEESLRYLKKKCEESI 73 (132)
Q Consensus 10 P~l~~~v~Dlp~v~~~a------~~~~ri~~~~---~~~----~~P~---~D~~ll~~vlh~~~de~~~~iL~~~~~~al 73 (132)
--++.+-+|...-+=.+ .+...++..+ =|+ .+|+ -=.+++...|-+++.++|...|. +++++|
T Consensus 105 ~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~-~l~~a~ 183 (321)
T COG4301 105 SLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLT-QLRGAL 183 (321)
T ss_pred CcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEEEecccccCCChHHHHHHHH-HHHhcC
Confidence 33788888874433222 1256666666 222 3442 34567789999999999999999 999999
Q ss_pred CCCC
Q 043665 74 PSND 77 (132)
Q Consensus 74 ~~~g 77 (132)
.||.
T Consensus 184 ~pGd 187 (321)
T COG4301 184 RPGD 187 (321)
T ss_pred CCcc
Confidence 9997
No 125
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=91.63 E-value=1.1 Score=32.48 Aligned_cols=65 Identities=9% Similarity=-0.015 Sum_probs=44.4
Q ss_pred HHHHHCC-CCeEEEeec-hhHHhhhcC-------CCCeEEEe--ccccCC---CceEEEehhhhcCCChHHHHHHHHHHh
Q 043665 4 AIATAFP-DIKCIVLIC-LLWWIIWWG-------TNNLEFFL--EFEAIP---PANVVLLKWILHDWSDEESLRYLKKKC 69 (132)
Q Consensus 4 ~l~~~~P-~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~--~~~~~P---~~D~~ll~~vlh~~~de~~~~iL~~~~ 69 (132)
.+++..+ .-+++.+|. |..++.+++ .++++++. ..+.+| .+|++++...++..+ + .+
T Consensus 89 ~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~--------~-~l 159 (205)
T PRK13944 89 VCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIP--------S-AL 159 (205)
T ss_pred HHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCcchhh--------H-HH
Confidence 4455443 558899998 677776664 24688776 555333 499999988876554 3 45
Q ss_pred hhhCCCCC
Q 043665 70 EESIPSND 77 (132)
Q Consensus 70 ~~al~~~g 77 (132)
.+.|+|||
T Consensus 160 ~~~L~~gG 167 (205)
T PRK13944 160 VRQLKDGG 167 (205)
T ss_pred HHhcCcCc
Confidence 56788998
No 126
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=91.52 E-value=0.04 Score=36.56 Aligned_cols=77 Identities=17% Similarity=0.262 Sum_probs=42.4
Q ss_pred ceEEEe----hhhhcCCChHHHHHHHHHHhhhhCCCCC-----CCCcchh----hhhhhhhhcCCCccCCHHHHHHHHHh
Q 043665 44 ANVVLL----KWILHDWSDEESLRYLKKKCEESIPSND-----EGRKTQL----CFDLLMATFLNGKEGSVYDWKKLFLA 110 (132)
Q Consensus 44 ~D~~ll----~~vlh~~~de~~~~iL~~~~~~al~~~g-----~~~~~~~----~~dl~m~~~~~g~~rt~~e~~~ll~~ 110 (132)
+|++++ +||==+|.|+..+.+++ ++++.|+||| +.+.... -..-.+..+...-...++++...|.+
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~-~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~~ 80 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFR-RIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLLE 80 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHH-HHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHTS
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHH-HHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHHh
Confidence 677766 46656799999999999 9999999999 2222110 00011111122223455678898887
Q ss_pred --CCCeeeEEEec
Q 043665 111 --AGFSHYKITPN 121 (132)
Q Consensus 111 --aGf~~~~~~~~ 121 (132)
.||...+....
T Consensus 81 ~evGF~~~e~~~~ 93 (110)
T PF06859_consen 81 PEVGFSSVEELGV 93 (110)
T ss_dssp TTT---EEEEE--
T ss_pred cccceEEEEEccc
Confidence 59998765433
No 127
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=91.28 E-value=0.54 Score=36.04 Aligned_cols=50 Identities=16% Similarity=0.085 Sum_probs=39.2
Q ss_pred CHHHHHHHCCCCeEEEeec-hhHHhhhcC-----C-CCeEEEe--ccccCCC-ceEEEeh
Q 043665 1 MARAIATAFPDIKCIVLIC-LLWWIIWWG-----T-NNLEFFL--EFEAIPP-ANVVLLK 50 (132)
Q Consensus 1 ~~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-----~-~ri~~~~--~~~~~P~-~D~~ll~ 50 (132)
++++++.+.|+.+++..|+ |..++.|+. . .|+.++. .|+++++ +|+++..
T Consensus 124 iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsN 183 (280)
T COG2890 124 IAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSN 183 (280)
T ss_pred HHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeC
Confidence 3678999999999999998 788888865 2 5555554 7888774 9998875
No 128
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=91.19 E-value=0.98 Score=33.98 Aligned_cols=104 Identities=17% Similarity=0.076 Sum_probs=63.2
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcCCCCeEEEe-ccccCCCceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCCCC
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWGTNNLEFFL-EFEAIPPANVVLLKWILHDWSDEESLRYLKKKCEESIPSNDEG 79 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~~~ri~~~~-~~~~~P~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g~~ 79 (132)
+.+|.++.|+.+++..|. |..++.+.+.+-+.-.. -.+.+..+|+++++ .|-+....+|+ .+...+++|.
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~Dlvvla-----vP~~~~~~~l~-~~~~~~~~~~-- 73 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLA-----VPVSAIEDVLE-EIAPYLKPGA-- 73 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE------S-HHHHHHHHH-HHHCGS-TTS--
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEc-----CCHHHHHHHHH-HhhhhcCCCc--
Confidence 678999999999999997 66777775544333322 22345678999995 46678999999 9999888874
Q ss_pred CcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEecCC
Q 043665 80 RKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITPNLG 123 (132)
Q Consensus 80 ~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 123 (132)
...|+ ++-|..-.+.+++.+. .|...+..+|+-|
T Consensus 74 ----iv~Dv-----~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G 107 (258)
T PF02153_consen 74 ----IVTDV-----GSVKAPIVEAMERLLP-EGVRFVGGHPMAG 107 (258)
T ss_dssp ----EEEE-------S-CHHHHHHHHHHHT-SSGEEEEEEESCS
T ss_pred ----EEEEe-----CCCCHHHHHHHHHhcC-cccceeecCCCCC
Confidence 33333 1233333344444444 4555555666533
No 129
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=91.00 E-value=1.6 Score=32.73 Aligned_cols=104 Identities=12% Similarity=0.006 Sum_probs=63.2
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC---CCCeEEEe--ccccCC-----CceEEEehhh------hcCCChH-----
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG---TNNLEFFL--EFEAIP-----PANVVLLKWI------LHDWSDE----- 59 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~---~~ri~~~~--~~~~~P-----~~D~~ll~~v------lh~~~de----- 59 (132)
+..+++++|+.+++.+|. |..++.++. ...++++. +++.++ .+|++++.-= ++..+++
T Consensus 101 ~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~e 180 (251)
T TIGR03704 101 GAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHE 180 (251)
T ss_pred HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCC
Confidence 456778899999999999 888888775 22355555 555332 4899887421 1111111
Q ss_pred -------------HHHHHHHHHhhhhCCCCCCCCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEE
Q 043665 60 -------------ESLRYLKKKCEESIPSNDEGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKIT 119 (132)
Q Consensus 60 -------------~~~~iL~~~~~~al~~~g~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 119 (132)
-...+++ .+...|+|||- ..+. .+. ...+++.+++++.||...-..
T Consensus 181 p~~al~gg~dgl~~~~~i~~-~a~~~L~~gG~-----l~l~-------~~~-~~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 181 PRVALDGGADGLDVLRRVAA-GAPDWLAPGGH-----LLVE-------TSE-RQAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred CHHHhcCCCcHHHHHHHHHH-HHHHhcCCCCE-----EEEE-------ECc-chHHHHHHHHHHCCCCceeeE
Confidence 1246666 77777777752 0000 111 124578889999999865544
No 130
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=90.96 E-value=0.26 Score=37.48 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=50.3
Q ss_pred CCC-ceEEEehhhhcCC--ChHHHHHHHHHHhhhhCCCCCCCCcchhhhhhhhhhcCCCc-----cCCHHHHHHHHHhCC
Q 043665 41 IPP-ANVVLLKWILHDW--SDEESLRYLKKKCEESIPSNDEGRKTQLCFDLLMATFLNGK-----EGSVYDWKKLFLAAG 112 (132)
Q Consensus 41 ~P~-~D~~ll~~vlh~~--~de~~~~iL~~~~~~al~~~g~~~~~~~~~dl~m~~~~~g~-----~rt~~e~~~ll~~aG 112 (132)
+|+ +|+++..-+|..- +-++-.+.|+ ++...|+|||.--- ....+..... .|++ .-+++..++-|+++|
T Consensus 155 ~p~~~D~v~s~fcLE~a~~d~~~y~~al~-ni~~lLkpGG~Lil-~~~l~~t~Y~-vG~~~F~~l~l~ee~v~~al~~aG 231 (256)
T PF01234_consen 155 LPPKFDCVISSFCLESACKDLDEYRRALR-NISSLLKPGGHLIL-AGVLGSTYYM-VGGHKFPCLPLNEEFVREALEEAG 231 (256)
T ss_dssp S-SSEEEEEEESSHHHH-SSHHHHHHHHH-HHHTTEEEEEEEEE-EEESS-SEEE-ETTEEEE---B-HHHHHHHHHHTT
T ss_pred CccchhhhhhhHHHHHHcCCHHHHHHHHH-HHHHHcCCCcEEEE-EEEcCceeEE-ECCEecccccCCHHHHHHHHHHcC
Confidence 454 9999999888764 5566789999 99999999982000 0000000000 1221 367899999999999
Q ss_pred CeeeEEEe
Q 043665 113 FSHYKITP 120 (132)
Q Consensus 113 f~~~~~~~ 120 (132)
|.+.+...
T Consensus 232 ~~i~~~~~ 239 (256)
T PF01234_consen 232 FDIEDLEK 239 (256)
T ss_dssp EEEEEEEG
T ss_pred CEEEeccc
Confidence 99988764
No 131
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=90.94 E-value=1.2 Score=34.11 Aligned_cols=88 Identities=18% Similarity=0.163 Sum_probs=58.1
Q ss_pred CCCeEEEe--ccc--cCC----CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCC---C-CCcchhhhhhhhhhcCCC
Q 043665 29 TNNLEFFL--EFE--AIP----PANVVLLKWILHDWSDEESLRYLKKKCEESIPSND---E-GRKTQLCFDLLMATFLNG 96 (132)
Q Consensus 29 ~~ri~~~~--~~~--~~P----~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g---~-~~~~~~~~dl~m~~~~~g 96 (132)
.++++..+ |.+ .-+ .+|+|+..-.+.- .+.....|+ .+...|+||| + +|-.-..-+.. ......
T Consensus 143 ~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~-tI~~lLkpgG~WIN~GPLlyh~~~~~-~~~~~s 218 (270)
T PF07942_consen 143 PSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIE-TIEHLLKPGGYWINFGPLLYHFEPMS-IPNEMS 218 (270)
T ss_pred CCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHH-HHHHHhccCCEEEecCCccccCCCCC-CCCCcc
Confidence 56788887 655 223 3899988866532 334789999 9999999999 2 22211111111 111234
Q ss_pred ccCCHHHHHHHHHhCCCeeeEEEe
Q 043665 97 KEGSVYDWKKLFLAAGFSHYKITP 120 (132)
Q Consensus 97 ~~rt~~e~~~ll~~aGf~~~~~~~ 120 (132)
-+.|.+|+..+.++.||++.+...
T Consensus 219 veLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 219 VELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEEE
Confidence 678999999999999999876443
No 132
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=90.67 E-value=0.67 Score=34.98 Aligned_cols=66 Identities=11% Similarity=0.101 Sum_probs=45.6
Q ss_pred HHHHHHHCCCC---eEEEeec-hhHHhhhcC-CCCeEEEe--ccc-cCC--CceEEEehhhhcCCChHHHHHHHHHHhhh
Q 043665 2 ARAIATAFPDI---KCIVLIC-LLWWIIWWG-TNNLEFFL--EFE-AIP--PANVVLLKWILHDWSDEESLRYLKKKCEE 71 (132)
Q Consensus 2 ~~~l~~~~P~l---~~~v~Dl-p~v~~~a~~-~~ri~~~~--~~~-~~P--~~D~~ll~~vlh~~~de~~~~iL~~~~~~ 71 (132)
+..+++.+|.. +++.+|+ |..++.|.+ ..++++.. ..+ +++ .+|+++.... ...++ .+++
T Consensus 100 ~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---------~~~~~-e~~r 169 (272)
T PRK11088 100 THALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---------PCKAE-ELAR 169 (272)
T ss_pred HHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC---------CCCHH-HHHh
Confidence 45667777753 6799998 778887765 46677665 444 554 3999986322 22457 8888
Q ss_pred hCCCCC
Q 043665 72 SIPSND 77 (132)
Q Consensus 72 al~~~g 77 (132)
.|+|||
T Consensus 170 vLkpgG 175 (272)
T PRK11088 170 VVKPGG 175 (272)
T ss_pred hccCCC
Confidence 999999
No 133
>PLN02672 methionine S-methyltransferase
Probab=90.52 E-value=2.9 Score=37.99 Aligned_cols=49 Identities=16% Similarity=0.049 Sum_probs=36.8
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC----------------------CCCeEEEe--ccccCC----CceEEEeh
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG----------------------TNNLEFFL--EFEAIP----PANVVLLK 50 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~----------------------~~ri~~~~--~~~~~P----~~D~~ll~ 50 (132)
+..+++++|+.+++.+|+ |..++.|+. .+||+++. +++..+ .+|+++.+
T Consensus 133 ai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSN 210 (1082)
T PLN02672 133 SIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGC 210 (1082)
T ss_pred HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEEC
Confidence 567889999999999998 777777743 14799888 776543 38987763
No 134
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=90.32 E-value=1.6 Score=31.89 Aligned_cols=59 Identities=12% Similarity=-0.055 Sum_probs=41.8
Q ss_pred CCCeEEEeec-hhHHhhhcC------CCCeEEEe--ccccCC---CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCC
Q 043665 10 PDIKCIVLIC-LLWWIIWWG------TNNLEFFL--EFEAIP---PANVVLLKWILHDWSDEESLRYLKKKCEESIPSND 77 (132)
Q Consensus 10 P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~~~P---~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g 77 (132)
++.+++.+|. |..++.+++ .++++++. .++..+ .+|++++....+.. .+ .+.+.|+|||
T Consensus 100 ~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~~--------~~-~l~~~LkpgG 170 (212)
T PRK13942 100 KSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGPDI--------PK-PLIEQLKDGG 170 (212)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCCcccc--------hH-HHHHhhCCCc
Confidence 4568899997 778877765 35788887 554332 49999997766544 34 5556799999
No 135
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=90.15 E-value=3.2 Score=31.43 Aligned_cols=107 Identities=10% Similarity=-0.052 Sum_probs=70.3
Q ss_pred CCeEEEeechhHHhhhcC---------CCCeEEEe--ccccC----------CC-ceEEEehhhhcCCChHHHHHHHHHH
Q 043665 11 DIKCIVLICLLWWIIWWG---------TNNLEFFL--EFEAI----------PP-ANVVLLKWILHDWSDEESLRYLKKK 68 (132)
Q Consensus 11 ~l~~~v~Dlp~v~~~a~~---------~~ri~~~~--~~~~~----------P~-~D~~ll~~vlh~~~de~~~~iL~~~ 68 (132)
+++..=+|+|.|++.-++ .+++.+++ +.+.+ |. --++++-.++.+++.+++.++|+ .
T Consensus 104 ~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~-~ 182 (260)
T TIGR00027 104 GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLA-F 182 (260)
T ss_pred CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHH-H
Confidence 578888899999985432 46788888 44321 22 34777889999999999999999 9
Q ss_pred hhhhCCCCC----CC-Ccc-h---h-hhh-h-hhhhcCCCc----cCCHHHHHHHHHhCCCeeeEE
Q 043665 69 CEESIPSND----EG-RKT-Q---L-CFD-L-LMATFLNGK----EGSVYDWKKLFLAAGFSHYKI 118 (132)
Q Consensus 69 ~~~al~~~g----~~-~~~-~---~-~~d-l-~m~~~~~g~----~rt~~e~~~ll~~aGf~~~~~ 118 (132)
+.+...||+ +. ... . . ... . .+.....+. ..+.+|..++|++.||+....
T Consensus 183 i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 183 IAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred HHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHHHHHCCCeeecC
Confidence 998887887 11 110 0 0 000 0 011000111 145789999999999998765
No 136
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=89.40 E-value=1.9 Score=31.32 Aligned_cols=66 Identities=6% Similarity=-0.091 Sum_probs=45.0
Q ss_pred HHHHHHCC-CCeEEEeec-hhHHhhhcC------CCCeEEEe--ccccCC---CceEEEehhhhcCCChHHHHHHHHHHh
Q 043665 3 RAIATAFP-DIKCIVLIC-LLWWIIWWG------TNNLEFFL--EFEAIP---PANVVLLKWILHDWSDEESLRYLKKKC 69 (132)
Q Consensus 3 ~~l~~~~P-~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~~~P---~~D~~ll~~vlh~~~de~~~~iL~~~~ 69 (132)
..+++..+ +.+++.+|. |..++.+++ .++++++. ..+..+ .+|++++....+. +.+ .+
T Consensus 93 ~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~--------~~~-~~ 163 (215)
T TIGR00080 93 AVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGPK--------IPE-AL 163 (215)
T ss_pred HHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCCccc--------ccH-HH
Confidence 44566544 467899997 778887765 35788887 544322 4999998765443 345 66
Q ss_pred hhhCCCCC
Q 043665 70 EESIPSND 77 (132)
Q Consensus 70 ~~al~~~g 77 (132)
.+.|+|||
T Consensus 164 ~~~L~~gG 171 (215)
T TIGR00080 164 IDQLKEGG 171 (215)
T ss_pred HHhcCcCc
Confidence 67899998
No 137
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=89.04 E-value=2 Score=31.92 Aligned_cols=69 Identities=10% Similarity=0.167 Sum_probs=49.6
Q ss_pred HHHHHHCC-CCeEEEeec-hhHHhhhcC-------CCCeEEEe--ccc---cC------CCceEEEehhhhcCCChHHHH
Q 043665 3 RAIATAFP-DIKCIVLIC-LLWWIIWWG-------TNNLEFFL--EFE---AI------PPANVVLLKWILHDWSDEESL 62 (132)
Q Consensus 3 ~~l~~~~P-~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~--~~~---~~------P~~D~~ll~~vlh~~~de~~~ 62 (132)
..+++..| +.+++.+|. |..++.|++ .++|+++. ..+ .+ +++|++++ |-+.+.-.
T Consensus 84 l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~Vfi-----Da~k~~y~ 158 (234)
T PLN02781 84 LTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFV-----DADKPNYV 158 (234)
T ss_pred HHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEE-----CCCHHHHH
Confidence 45566654 679999998 667777765 57888887 333 11 24999988 44445567
Q ss_pred HHHHHHhhhhCCCCC
Q 043665 63 RYLKKKCEESIPSND 77 (132)
Q Consensus 63 ~iL~~~~~~al~~~g 77 (132)
.++. .+.+.|+|||
T Consensus 159 ~~~~-~~~~ll~~GG 172 (234)
T PLN02781 159 HFHE-QLLKLVKVGG 172 (234)
T ss_pred HHHH-HHHHhcCCCe
Confidence 8889 9999999998
No 138
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=88.99 E-value=1.5 Score=35.38 Aligned_cols=68 Identities=10% Similarity=0.144 Sum_probs=45.8
Q ss_pred HHHHHCCCC-eEEEeec-hhHHhhhcC-------------CCCeEEEe--ccccCC----CceEEEehhhhcCCChHH--
Q 043665 4 AIATAFPDI-KCIVLIC-LLWWIIWWG-------------TNNLEFFL--EFEAIP----PANVVLLKWILHDWSDEE-- 60 (132)
Q Consensus 4 ~l~~~~P~l-~~~v~Dl-p~v~~~a~~-------------~~ri~~~~--~~~~~P----~~D~~ll~~vlh~~~de~-- 60 (132)
+=+.+||+. +.+.+|+ |.+++.++. ..|++.+. .|..+. .+|+++. |++|..
T Consensus 305 RellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIV-----Dl~DP~tp 379 (508)
T COG4262 305 RELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIV-----DLPDPSTP 379 (508)
T ss_pred HHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEE-----eCCCCCCc
Confidence 334579965 6999999 999998873 57998887 555332 3776655 666643
Q ss_pred ------HHHHHHHHhhhhCCCCC
Q 043665 61 ------SLRYLKKKCEESIPSND 77 (132)
Q Consensus 61 ------~~~iL~~~~~~al~~~g 77 (132)
..+.-+ -+++.++++|
T Consensus 380 s~~rlYS~eFY~-ll~~~l~e~G 401 (508)
T COG4262 380 SIGRLYSVEFYR-LLSRHLAETG 401 (508)
T ss_pred chhhhhhHHHHH-HHHHhcCcCc
Confidence 234455 5566778777
No 139
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=88.56 E-value=4 Score=31.74 Aligned_cols=96 Identities=13% Similarity=-0.134 Sum_probs=59.1
Q ss_pred CCCCeEEEeec-hhHHhhhcC------CCCeEEEe--ccc-cCC--CceEEEehh------hh-cCCChHHHHHHHHHHh
Q 043665 9 FPDIKCIVLIC-LLWWIIWWG------TNNLEFFL--EFE-AIP--PANVVLLKW------IL-HDWSDEESLRYLKKKC 69 (132)
Q Consensus 9 ~P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~-~~P--~~D~~ll~~------vl-h~~~de~~~~iL~~~~ 69 (132)
..+.+++..|. |.+++.++. .+.+.+.. +.+ +.+ .+|++++.- .. .+...+.-..+|+ .+
T Consensus 202 ~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~-~~ 280 (329)
T TIGR01177 202 LMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLE-EF 280 (329)
T ss_pred HhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHH-HH
Confidence 34678899998 667776553 23366655 544 443 389998841 11 1122344578999 99
Q ss_pred hhhCCCCCCCCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEec
Q 043665 70 EESIPSNDEGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITPN 121 (132)
Q Consensus 70 ~~al~~~g~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 121 (132)
++.|+|||-. . ++. .+..+|..+++++|| +......
T Consensus 281 ~r~Lk~gG~l-----v----~~~------~~~~~~~~~~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 281 HEVLKSEGWI-----V----YAV------PTRIDLESLAEDAFR-VVKRFEV 316 (329)
T ss_pred HHHccCCcEE-----E----EEE------cCCCCHHHHHhhcCc-chheeee
Confidence 9999998720 0 000 112367788999999 7766554
No 140
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=88.53 E-value=1.1 Score=29.06 Aligned_cols=79 Identities=15% Similarity=0.117 Sum_probs=48.7
Q ss_pred hhcCCChHHHHHHHHHHhhhhCCCCC---CCCcchhhhhhhhhhc--CCCcc-------CCHHHHHHHHHhCCCeeeEEE
Q 043665 52 ILHDWSDEESLRYLKKKCEESIPSND---EGRKTQLCFDLLMATF--LNGKE-------GSVYDWKKLFLAAGFSHYKIT 119 (132)
Q Consensus 52 vlh~~~de~~~~iL~~~~~~al~~~g---~~~~~~~~~dl~m~~~--~~g~~-------rt~~e~~~ll~~aGf~~~~~~ 119 (132)
+|=+++.++..++|. ++..- ..+. ...+....+.+...+. +=|.. -+++++.+.++++||++.+..
T Consensus 4 vLIHYp~~d~~~~l~-~La~~-t~~~~ifTfAP~T~~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~~l~~~g~~~~r~~ 81 (97)
T PF07109_consen 4 VLIHYPAEDAAQMLA-HLASR-TRGSLIFTFAPRTPLLALMHAIGKLFPRPDRSPRIYPHREEDLRRALAAAGWRIGRTE 81 (97)
T ss_pred eEeccCHHHHHHHHH-HHHHh-ccCcEEEEECCCCHHHHHHHHHhccCCCCCCCCcEEEeCHHHHHHHHHhCCCeeeecc
Confidence 445689999999999 87753 3332 1112223333332221 22222 346899999999999999988
Q ss_pred ecCCc---ceEEEEEC
Q 043665 120 PNLGL---WSLIEAYP 132 (132)
Q Consensus 120 ~~~~~---~~~ie~~p 132 (132)
.+... ..++|++|
T Consensus 82 ris~gFY~S~llE~~r 97 (97)
T PF07109_consen 82 RISSGFYISQLLEAVR 97 (97)
T ss_pred cccCcChHHHHhhccC
Confidence 77542 46677664
No 141
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.21 E-value=1.8 Score=33.52 Aligned_cols=107 Identities=7% Similarity=-0.071 Sum_probs=70.8
Q ss_pred CCeEEEeechhHHhhhcC---------CCCeEEEe--cc-ccCC------Cc-----eEEEehhhhcCCChHHHHHHHHH
Q 043665 11 DIKCIVLICLLWWIIWWG---------TNNLEFFL--EF-EAIP------PA-----NVVLLKWILHDWSDEESLRYLKK 67 (132)
Q Consensus 11 ~l~~~v~Dlp~v~~~a~~---------~~ri~~~~--~~-~~~P------~~-----D~~ll~~vlh~~~de~~~~iL~~ 67 (132)
+++.-=+|+|+|++.=++ ..++++++ ++ +++| ++ -+.++-.+|.+++.+...++|.
T Consensus 115 ~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~- 193 (297)
T COG3315 115 GTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLS- 193 (297)
T ss_pred CCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHH-
Confidence 356667788999996443 23889999 77 3433 12 3788889999999999999999
Q ss_pred HhhhhCCCCC----CCC-cchh------hhh-hhhh--hc-CC---CccCCHHHHHHHHHhCCCeeeEE
Q 043665 68 KCEESIPSND----EGR-KTQL------CFD-LLMA--TF-LN---GKEGSVYDWKKLFLAAGFSHYKI 118 (132)
Q Consensus 68 ~~~~al~~~g----~~~-~~~~------~~d-l~m~--~~-~~---g~~rt~~e~~~ll~~aGf~~~~~ 118 (132)
++....+||+ ... .... ..+ ..|- .. .+ -......|+..++.+.||..+..
T Consensus 194 ~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 194 RIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred HHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHHHHHHhcCEEEEec
Confidence 9999999887 111 0000 000 0010 00 01 11244789999999999998765
No 142
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=86.03 E-value=6 Score=32.12 Aligned_cols=74 Identities=14% Similarity=0.086 Sum_probs=48.2
Q ss_pred HHHHHHC-CCCeEEEeec-hhHHhhhcC------CCCeEEEe--ccc---cCC-CceEEEehh------hh-------cC
Q 043665 3 RAIATAF-PDIKCIVLIC-LLWWIIWWG------TNNLEFFL--EFE---AIP-PANVVLLKW------IL-------HD 55 (132)
Q Consensus 3 ~~l~~~~-P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~---~~P-~~D~~ll~~------vl-------h~ 55 (132)
..+++.. |+.+++.+|+ +..++.+++ .++|+++. +.+ .++ .+|+|++-- ++ ..
T Consensus 266 ~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~ 345 (444)
T PRK14902 266 THIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYN 345 (444)
T ss_pred HHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCCCCCCeeeccCcchhhc
Confidence 4556654 6789999999 777776654 23577776 433 244 499998731 11 12
Q ss_pred CChHH-------HHHHHHHHhhhhCCCCC
Q 043665 56 WSDEE-------SLRYLKKKCEESIPSND 77 (132)
Q Consensus 56 ~~de~-------~~~iL~~~~~~al~~~g 77 (132)
++.++ ...+|+ ++.+.|+|||
T Consensus 346 ~~~~~~~~l~~~q~~iL~-~a~~~LkpGG 373 (444)
T PRK14902 346 KTKEDIESLQEIQLEILE-SVAQYLKKGG 373 (444)
T ss_pred CCHHHHHHHHHHHHHHHH-HHHHHcCCCC
Confidence 23333 256899 9999999998
No 143
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=84.21 E-value=6 Score=29.08 Aligned_cols=106 Identities=15% Similarity=0.035 Sum_probs=63.9
Q ss_pred HHHHHHCCCCeEEEeec-hhHHhhhcC-------CCCeEEEe--cccc--CCC-ceEEEehhhhcC------CChHHHHH
Q 043665 3 RAIATAFPDIKCIVLIC-LLWWIIWWG-------TNNLEFFL--EFEA--IPP-ANVVLLKWILHD------WSDEESLR 63 (132)
Q Consensus 3 ~~l~~~~P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~--~~~~--~P~-~D~~ll~~vlh~------~~de~~~~ 63 (132)
..|+++-=.-+.+.+|. +..++.|+. .+-|+|+. +++| .++ +|+++=+-.+.. -.+.....
T Consensus 83 ~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~ 162 (227)
T KOG1271|consen 83 FQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVV 162 (227)
T ss_pred HHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceee
Confidence 34444332223456676 556676654 45599988 7774 343 998887765532 22222234
Q ss_pred HHHHHhhhhCCCCCCCCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEecC
Q 043665 64 YLKKKCEESIPSNDEGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITPNL 122 (132)
Q Consensus 64 iL~~~~~~al~~~g~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 122 (132)
.+. .+...|+||| +...+.|| .|.+|+.+.++.-||......|.+
T Consensus 163 Y~d-~v~~ll~~~g----------ifvItSCN---~T~dELv~~f~~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 163 YLD-SVEKLLSPGG----------IFVITSCN---FTKDELVEEFENFNFEYLSTVPTP 207 (227)
T ss_pred ehh-hHhhccCCCc----------EEEEEecC---ccHHHHHHHHhcCCeEEEEeeccc
Confidence 455 5555555553 11222233 789999999999999998887764
No 144
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=83.91 E-value=1 Score=33.01 Aligned_cols=70 Identities=19% Similarity=0.135 Sum_probs=52.3
Q ss_pred HHHHHHHCC-CCeEEEeec-hhHHhhhcC-------CCCeEEEe--c---ccc----C--CCceEEEehhhhcCCChHHH
Q 043665 2 ARAIATAFP-DIKCIVLIC-LLWWIIWWG-------TNNLEFFL--E---FEA----I--PPANVVLLKWILHDWSDEES 61 (132)
Q Consensus 2 ~~~l~~~~P-~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~--~---~~~----~--P~~D~~ll~~vlh~~~de~~ 61 (132)
+..++++.| +.+.+-+|. |...+.|++ .+||+++. . +.. - .++|++++ |-+...-
T Consensus 60 al~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFi-----Da~K~~y 134 (205)
T PF01596_consen 60 ALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFI-----DADKRNY 134 (205)
T ss_dssp HHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEE-----ESTGGGH
T ss_pred HHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEE-----cccccch
Confidence 356777776 589999998 667777765 57999987 2 221 1 24999998 5566677
Q ss_pred HHHHHHHhhhhCCCCC
Q 043665 62 LRYLKKKCEESIPSND 77 (132)
Q Consensus 62 ~~iL~~~~~~al~~~g 77 (132)
...+. .+.+.|+|||
T Consensus 135 ~~y~~-~~~~ll~~gg 149 (205)
T PF01596_consen 135 LEYFE-KALPLLRPGG 149 (205)
T ss_dssp HHHHH-HHHHHEEEEE
T ss_pred hhHHH-HHhhhccCCe
Confidence 88899 8889999998
No 145
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=83.70 E-value=6 Score=29.85 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=50.6
Q ss_pred HHHHHHC-CCCeEEEeec-hhHHhhhcC-------CCCeEEEe--ccc---cC-------CCceEEEehhhhcCCChHHH
Q 043665 3 RAIATAF-PDIKCIVLIC-LLWWIIWWG-------TNNLEFFL--EFE---AI-------PPANVVLLKWILHDWSDEES 61 (132)
Q Consensus 3 ~~l~~~~-P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~--~~~---~~-------P~~D~~ll~~vlh~~~de~~ 61 (132)
..+++.- |+.+.+-+|. |...+.|++ .++|+++. ..+ .+ ..+|++++ |-+.+.-
T Consensus 95 l~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFi-----DadK~~Y 169 (247)
T PLN02589 95 LATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFV-----DADKDNY 169 (247)
T ss_pred HHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEe-----cCCHHHh
Confidence 3455554 5778999998 666777764 68999887 332 21 25999988 5567777
Q ss_pred HHHHHHHhhhhCCCCC
Q 043665 62 LRYLKKKCEESIPSND 77 (132)
Q Consensus 62 ~~iL~~~~~~al~~~g 77 (132)
...+. .+.+.|+|||
T Consensus 170 ~~y~~-~~l~ll~~GG 184 (247)
T PLN02589 170 INYHK-RLIDLVKVGG 184 (247)
T ss_pred HHHHH-HHHHhcCCCe
Confidence 88999 9999999998
No 146
>PLN02476 O-methyltransferase
Probab=82.01 E-value=21 Score=27.47 Aligned_cols=118 Identities=10% Similarity=0.004 Sum_probs=69.6
Q ss_pred HHHHHHCC-CCeEEEeec-hhHHhhhcC-------CCCeEEEe--ccc---cC------CCceEEEehhhhcCCChHHHH
Q 043665 3 RAIATAFP-DIKCIVLIC-LLWWIIWWG-------TNNLEFFL--EFE---AI------PPANVVLLKWILHDWSDEESL 62 (132)
Q Consensus 3 ~~l~~~~P-~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~--~~~---~~------P~~D~~ll~~vlh~~~de~~~ 62 (132)
..+++.-| +-+.+-+|. |...+.|++ .++|+++. ..+ .+ ..+|++++ |-+...-.
T Consensus 134 l~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFI-----Da~K~~Y~ 208 (278)
T PLN02476 134 LAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFV-----DADKRMYQ 208 (278)
T ss_pred HHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEE-----CCCHHHHH
Confidence 34555544 667899998 666777765 57899887 333 22 24999888 66677788
Q ss_pred HHHHHHhhhhCCCCC-----CCCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEecCCcceEEE
Q 043665 63 RYLKKKCEESIPSND-----EGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITPNLGLWSLIE 129 (132)
Q Consensus 63 ~iL~~~~~~al~~~g-----~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~ie 129 (132)
..+. .+.+.|+||| +.-......|-. ....+.....+|.+.+.+-.=-...+.|++....++.
T Consensus 209 ~y~e-~~l~lL~~GGvIV~DNvL~~G~V~d~~---~~d~~t~~ir~fn~~v~~d~~~~~~llPigDGl~i~~ 276 (278)
T PLN02476 209 DYFE-LLLQLVRVGGVIVMDNVLWHGRVADPL---VNDAKTISIRNFNKKLMDDKRVSISMVPIGDGMTICR 276 (278)
T ss_pred HHHH-HHHHhcCCCcEEEEecCccCCcccCcc---cCCHHHHHHHHHHHHHhhCCCEEEEEEEeCCeeEEEE
Confidence 9999 9999999998 211111111100 0011112345666666655323344558876666553
No 147
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=81.97 E-value=12 Score=28.12 Aligned_cols=73 Identities=14% Similarity=0.181 Sum_probs=45.0
Q ss_pred HHHHHCC-CCeEEEeec-hhHHhhhcC------CCCeEEEe--c--cc-cCCCceEEEeh-------------hhhcCCC
Q 043665 4 AIATAFP-DIKCIVLIC-LLWWIIWWG------TNNLEFFL--E--FE-AIPPANVVLLK-------------WILHDWS 57 (132)
Q Consensus 4 ~l~~~~P-~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~--~~-~~P~~D~~ll~-------------~vlh~~~ 57 (132)
.+++... .-+++.+|. +..++.+++ ..+|+++. . +. ..+.+|.|++- .+...|+
T Consensus 88 ~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~ 167 (264)
T TIGR00446 88 QISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWS 167 (264)
T ss_pred HHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCC
Confidence 3444443 347888998 666666654 24566665 2 11 22349999872 1222355
Q ss_pred hHHH-------HHHHHHHhhhhCCCCC
Q 043665 58 DEES-------LRYLKKKCEESIPSND 77 (132)
Q Consensus 58 de~~-------~~iL~~~~~~al~~~g 77 (132)
+++. .++|+ ++.+.++|||
T Consensus 168 ~~~~~~l~~~q~~iL~-~a~~~lkpgG 193 (264)
T TIGR00446 168 EEDIQEISALQKELID-SAFDALKPGG 193 (264)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhcCCCC
Confidence 5544 56999 9999999999
No 148
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=80.61 E-value=9.6 Score=27.40 Aligned_cols=56 Identities=9% Similarity=0.016 Sum_probs=38.6
Q ss_pred eEEEeec-hhHHhhhcC------CCCeEEEe--ccccCC---CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCC
Q 043665 13 KCIVLIC-LLWWIIWWG------TNNLEFFL--EFEAIP---PANVVLLKWILHDWSDEESLRYLKKKCEESIPSND 77 (132)
Q Consensus 13 ~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~~~P---~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g 77 (132)
+++.+|. |..++.+++ ..+++++. .++..+ .+|++++...++++ .+ .+.+.|+|||
T Consensus 102 ~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~--------~~-~l~~~L~~gG 169 (212)
T PRK00312 102 RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPEI--------PR-ALLEQLKEGG 169 (212)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCchhh--------hH-HHHHhcCCCc
Confidence 6777886 667766654 24578777 555433 49999997766543 45 6677899998
No 149
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=80.42 E-value=3.7 Score=27.61 Aligned_cols=29 Identities=21% Similarity=0.066 Sum_probs=25.1
Q ss_pred CCccCCHHHHHHHHHhCCCeeeEEEecCC
Q 043665 95 NGKEGSVYDWKKLFLAAGFSHYKITPNLG 123 (132)
Q Consensus 95 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 123 (132)
.+.-+|.++++.++++|||++.+.+....
T Consensus 92 ~S~Ky~~~~~~~l~~~aGl~~~~~w~d~~ 120 (127)
T PF10017_consen 92 NSYKYSPEEFEALAEQAGLEVEKRWTDPK 120 (127)
T ss_pred EeeCcCHHHHHHHHHHCCCeeEEEEECCC
Confidence 56679999999999999999998876654
No 150
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=80.24 E-value=20 Score=26.14 Aligned_cols=113 Identities=12% Similarity=-0.015 Sum_probs=65.2
Q ss_pred HHHHHCCCCeEEEeechh-HHhhhcCCCCeEEEe-----ccccCC--CceEEEehhhhcCCChHHHHHHHHHHhhhhCCC
Q 043665 4 AIATAFPDIKCIVLICLL-WWIIWWGTNNLEFFL-----EFEAIP--PANVVLLKWILHDWSDEESLRYLKKKCEESIPS 75 (132)
Q Consensus 4 ~l~~~~P~l~~~v~Dlp~-v~~~a~~~~ri~~~~-----~~~~~P--~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~ 75 (132)
+.+++..++++..+|+-. -+..+- ...++++. -+..+| .+|.+++++.|...... .++|+ .+.+.
T Consensus 29 ~~L~~~k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P--~~vL~-EmlRV--- 101 (193)
T PF07021_consen 29 AYLKDEKQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRRP--DEVLE-EMLRV--- 101 (193)
T ss_pred HHHHHhcCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhHH--HHHHH-HHHHh---
Confidence 445556788888888733 232222 23344444 223466 39999999999887443 34455 44333
Q ss_pred CCC----CCcch---hhhhhh----hh----------hcCCCccCCHHHHHHHHHhCCCeeeEEEecCC
Q 043665 76 NDE----GRKTQ---LCFDLL----MA----------TFLNGKEGSVYDWKKLFLAAGFSHYKITPNLG 123 (132)
Q Consensus 76 ~g~----~~~~~---~~~dl~----m~----------~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 123 (132)
|.. -|.++ .-+.+. |= -..|=..-|..+|+++.++.|+++.+...+.+
T Consensus 102 gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 102 GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcC
Confidence 321 11111 001110 10 11355568999999999999999998777654
No 151
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=79.50 E-value=8.1 Score=27.20 Aligned_cols=71 Identities=14% Similarity=0.087 Sum_probs=43.3
Q ss_pred HHHHHCCCCeEEEeechhHHhhhcC---------CCCeEEEe--cccc-----C-C-CceEEEehhhhcCCChHHHHHHH
Q 043665 4 AIATAFPDIKCIVLICLLWWIIWWG---------TNNLEFFL--EFEA-----I-P-PANVVLLKWILHDWSDEESLRYL 65 (132)
Q Consensus 4 ~l~~~~P~l~~~v~Dlp~v~~~a~~---------~~ri~~~~--~~~~-----~-P-~~D~~ll~~vlh~~~de~~~~iL 65 (132)
.+++.++..++++-|.+.+++..+. ..++++.. .-++ . + .+|+++.+-|+++ ++....++
T Consensus 62 ~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~--~~~~~~L~ 139 (173)
T PF10294_consen 62 AAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYD--EELFEPLV 139 (173)
T ss_dssp HHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEEES--S---GGGHHHHH
T ss_pred HHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEEecccch--HHHHHHHH
Confidence 3444457888999999888876654 35677777 3221 2 2 3999999999985 56678888
Q ss_pred HHHhhhhCCCCC
Q 043665 66 KKKCEESIPSND 77 (132)
Q Consensus 66 ~~~~~~al~~~g 77 (132)
+ -+...|++++
T Consensus 140 ~-tl~~ll~~~~ 150 (173)
T PF10294_consen 140 R-TLKRLLKPNG 150 (173)
T ss_dssp H-HHHHHBTT-T
T ss_pred H-HHHHHhCCCC
Confidence 8 9999999886
No 152
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=79.35 E-value=15 Score=29.81 Aligned_cols=72 Identities=10% Similarity=-0.005 Sum_probs=45.2
Q ss_pred HHHHC-CCCeEEEeec-hhHHhhhcC------CCCeEEEe--ccccCC--CceEEEeh------h-------hhcCCChH
Q 043665 5 IATAF-PDIKCIVLIC-LLWWIIWWG------TNNLEFFL--EFEAIP--PANVVLLK------W-------ILHDWSDE 59 (132)
Q Consensus 5 l~~~~-P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~~~P--~~D~~ll~------~-------vlh~~~de 59 (132)
+++.. +.-+++.+|. +..++.+++ .++|+++. ..+..+ .+|++++- . +...|+.+
T Consensus 268 la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~ 347 (445)
T PRK14904 268 MAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAPCTGTGVLGRRAELRWKLTPE 347 (445)
T ss_pred HHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCCCCCcchhhcCcchhhcCCHH
Confidence 44433 3458899998 667776654 24577766 433223 39999861 1 11234444
Q ss_pred HH-------HHHHHHHhhhhCCCCC
Q 043665 60 ES-------LRYLKKKCEESIPSND 77 (132)
Q Consensus 60 ~~-------~~iL~~~~~~al~~~g 77 (132)
+. .++|+ ++.+.|+|||
T Consensus 348 ~~~~l~~~q~~iL~-~a~~~lkpgG 371 (445)
T PRK14904 348 KLAELVGLQAELLD-HAASLLKPGG 371 (445)
T ss_pred HHHHHHHHHHHHHH-HHHHhcCCCc
Confidence 32 46899 9999999999
No 153
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=79.23 E-value=11 Score=28.11 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=51.7
Q ss_pred HHHHHHCC-CCeEEEeec-hhHHhhhcC-------CCCeEEEe------cccc-C-CCceEEEehhhhcCCChHHHHHHH
Q 043665 3 RAIATAFP-DIKCIVLIC-LLWWIIWWG-------TNNLEFFL------EFEA-I-PPANVVLLKWILHDWSDEESLRYL 65 (132)
Q Consensus 3 ~~l~~~~P-~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~------~~~~-~-P~~D~~ll~~vlh~~~de~~~~iL 65 (132)
..++..-| +-+.+-+|. |+-.+.|++ .+||+... -++. . .++|++++ |-+...-...|
T Consensus 75 l~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI-----DadK~~yp~~l 149 (219)
T COG4122 75 LWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI-----DADKADYPEYL 149 (219)
T ss_pred HHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEE-----eCChhhCHHHH
Confidence 45667777 788999998 677777775 56665443 2232 2 35999998 77777888999
Q ss_pred HHHhhhhCCCCC
Q 043665 66 KKKCEESIPSND 77 (132)
Q Consensus 66 ~~~~~~al~~~g 77 (132)
. .+.+.|+|||
T Consensus 150 e-~~~~lLr~GG 160 (219)
T COG4122 150 E-RALPLLRPGG 160 (219)
T ss_pred H-HHHHHhCCCc
Confidence 9 9999999999
No 154
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=79.09 E-value=3.5 Score=31.94 Aligned_cols=68 Identities=12% Similarity=-0.082 Sum_probs=48.4
Q ss_pred CCCCeEEEeechh-HHhhhcCCCC-eEEEe-ccc-cCC--CceEEEehhhhcCCC-hHHHHHHHHHHhhhhCCCCC
Q 043665 9 FPDIKCIVLICLL-WWIIWWGTNN-LEFFL-EFE-AIP--PANVVLLKWILHDWS-DEESLRYLKKKCEESIPSND 77 (132)
Q Consensus 9 ~P~l~~~v~Dlp~-v~~~a~~~~r-i~~~~-~~~-~~P--~~D~~ll~~vlh~~~-de~~~~iL~~~~~~al~~~g 77 (132)
+|.+-.+..|+-. .+..++..+- ...++ ... |.+ .+|..+-..++|.|+ .+....+++ .+.+.++|||
T Consensus 63 ~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~-e~~r~lrpgg 137 (293)
T KOG1331|consen 63 NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALE-ELLRVLRPGG 137 (293)
T ss_pred CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHH-HHHHHhcCCC
Confidence 4666777777743 4444454333 34455 554 554 499999999999995 555778999 9999999999
No 155
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=78.18 E-value=1.1 Score=35.18 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=29.4
Q ss_pred CceEEEehhhhcCC--ChHHHHHHHHHHhhhhCCCCC
Q 043665 43 PANVVLLKWILHDW--SDEESLRYLKKKCEESIPSND 77 (132)
Q Consensus 43 ~~D~~ll~~vlh~~--~de~~~~iL~~~~~~al~~~g 77 (132)
.+|++-+.-.||+- +.+.+..+|+ +++..|+|||
T Consensus 145 ~FDvVScQFalHY~Fese~~ar~~l~-Nvs~~Lk~GG 180 (331)
T PF03291_consen 145 KFDVVSCQFALHYAFESEEKARQFLK-NVSSLLKPGG 180 (331)
T ss_dssp -EEEEEEES-GGGGGSSHHHHHHHHH-HHHHTEEEEE
T ss_pred CcceeehHHHHHHhcCCHHHHHHHHH-HHHHhcCCCC
Confidence 49999999999993 7777888999 9999999999
No 156
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=77.97 E-value=13 Score=28.80 Aligned_cols=99 Identities=15% Similarity=0.065 Sum_probs=59.6
Q ss_pred HCCCCeEEEeec-hhHHhhhcC-------CCCeEEEeccccCC--CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCC
Q 043665 8 AFPDIKCIVLIC-LLWWIIWWG-------TNNLEFFLEFEAIP--PANVVLLKWILHDWSDEESLRYLKKKCEESIPSND 77 (132)
Q Consensus 8 ~~P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~~~~~~P--~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g 77 (132)
+.-.-+++.+|. |..++.+++ .+++.+. ...+.+ .||+++. ||+ .+.-..+.. .+.+.|+|||
T Consensus 181 klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~-~~~~~~~~~~dlvvA-NI~----~~vL~~l~~-~~~~~l~~~G 253 (295)
T PF06325_consen 181 KLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS-LSEDLVEGKFDLVVA-NIL----ADVLLELAP-DIASLLKPGG 253 (295)
T ss_dssp HTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES-CTSCTCCS-EEEEEE-ES-----HHHHHHHHH-HCHHHEEEEE
T ss_pred HcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE-EecccccccCCEEEE-CCC----HHHHHHHHH-HHHHhhCCCC
Confidence 343446899998 777777765 4566543 222333 4999885 444 244566777 8888888875
Q ss_pred CCCcchhhhhhhhhhcCCCc-cCCHHHHHHHHHhCCCeeeEEEecCCcceE
Q 043665 78 EGRKTQLCFDLLMATFLNGK-EGSVYDWKKLFLAAGFSHYKITPNLGLWSL 127 (132)
Q Consensus 78 ~~~~~~~~~dl~m~~~~~g~-~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~ 127 (132)
- .. ..|- .-..+++.+.+++ ||++.+....++..++
T Consensus 254 ~-----lI--------lSGIl~~~~~~v~~a~~~-g~~~~~~~~~~~W~~l 290 (295)
T PF06325_consen 254 Y-----LI--------LSGILEEQEDEVIEAYKQ-GFELVEEREEGEWVAL 290 (295)
T ss_dssp E-----EE--------EEEEEGGGHHHHHHHHHT-TEEEEEEEEETTEEEE
T ss_pred E-----EE--------EccccHHHHHHHHHHHHC-CCEEEEEEEECCEEEE
Confidence 1 00 0111 1234677788877 9999888776444333
No 157
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=77.58 E-value=4.4 Score=32.55 Aligned_cols=48 Identities=6% Similarity=0.045 Sum_probs=41.0
Q ss_pred CCCeEEEe-----ccccCC--CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCC
Q 043665 29 TNNLEFFL-----EFEAIP--PANVVLLKWILHDWSDEESLRYLKKKCEESIPSND 77 (132)
Q Consensus 29 ~~ri~~~~-----~~~~~P--~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g 77 (132)
.+||+++. ++...| ..|.+.++.+..-.++++..++++ .+.++++|||
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~-~l~~~~~pga 328 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQ-ELARTARPGA 328 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHH-HHHHHhCCCC
Confidence 68999888 333454 399999999997779999999999 9999999999
No 158
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=77.51 E-value=16 Score=26.48 Aligned_cols=68 Identities=12% Similarity=0.039 Sum_probs=40.9
Q ss_pred HHHHC-CCCeEEEeechhHHhhhcCCCCeEEEe--cccc---------CC--CceEEEehhhhcCCChH---------HH
Q 043665 5 IATAF-PDIKCIVLICLLWWIIWWGTNNLEFFL--EFEA---------IP--PANVVLLKWILHDWSDE---------ES 61 (132)
Q Consensus 5 l~~~~-P~l~~~v~Dlp~v~~~a~~~~ri~~~~--~~~~---------~P--~~D~~ll~~vlh~~~de---------~~ 61 (132)
+++.. |..+++.+|+-.+. ...+++++. +.++ .+ .+|+++..-..|..++. ..
T Consensus 69 l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~ 144 (209)
T PRK11188 69 AVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLV 144 (209)
T ss_pred HHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHH
Confidence 44443 44577777774421 123466665 4441 33 39999986555443321 12
Q ss_pred HHHHHHHhhhhCCCCC
Q 043665 62 LRYLKKKCEESIPSND 77 (132)
Q Consensus 62 ~~iL~~~~~~al~~~g 77 (132)
..+|+ .+++.|+|||
T Consensus 145 ~~~L~-~~~~~LkpGG 159 (209)
T PRK11188 145 ELALD-MCRDVLAPGG 159 (209)
T ss_pred HHHHH-HHHHHcCCCC
Confidence 56899 9999999997
No 159
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=77.28 E-value=15 Score=29.69 Aligned_cols=74 Identities=11% Similarity=0.016 Sum_probs=46.9
Q ss_pred HHHHHHCCCCeEEEeec-hhHHhhhcC-----C-C-CeEEEe--ccc-cC--C--CceEEEeh------hhhcCCCh---
Q 043665 3 RAIATAFPDIKCIVLIC-LLWWIIWWG-----T-N-NLEFFL--EFE-AI--P--PANVVLLK------WILHDWSD--- 58 (132)
Q Consensus 3 ~~l~~~~P~l~~~v~Dl-p~v~~~a~~-----~-~-ri~~~~--~~~-~~--P--~~D~~ll~------~vlh~~~d--- 58 (132)
..+++..|+.+++.+|. +..++.+++ . + ++.+.. ... +. + .+|.+++- .+++..++
T Consensus 254 ~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~ 333 (426)
T TIGR00563 254 THILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKW 333 (426)
T ss_pred HHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhh
Confidence 45666677778999998 667776654 1 1 232233 222 11 2 39999862 35554433
Q ss_pred ----HH-------HHHHHHHHhhhhCCCCC
Q 043665 59 ----EE-------SLRYLKKKCEESIPSND 77 (132)
Q Consensus 59 ----e~-------~~~iL~~~~~~al~~~g 77 (132)
++ -.++|+ ++.+.|+|||
T Consensus 334 ~~~~~~~~~l~~lQ~~lL~-~a~~~LkpgG 362 (426)
T TIGR00563 334 LRKPRDIAELAELQSEILD-AIWPLLKTGG 362 (426)
T ss_pred cCCHHHHHHHHHHHHHHHH-HHHHhcCCCc
Confidence 22 368999 9999999999
No 160
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=77.27 E-value=33 Score=26.82 Aligned_cols=100 Identities=16% Similarity=0.110 Sum_probs=62.2
Q ss_pred HCCCCeEEEeec-hhHHhhhcC---CCCeE---EEeccc--cCC---CceEEEehhhhcCCChHHHHHHHHHHhhhhCCC
Q 043665 8 AFPDIKCIVLIC-LLWWIIWWG---TNNLE---FFLEFE--AIP---PANVVLLKWILHDWSDEESLRYLKKKCEESIPS 75 (132)
Q Consensus 8 ~~P~l~~~v~Dl-p~v~~~a~~---~~ri~---~~~~~~--~~P---~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~ 75 (132)
+.-.-+++.+|+ |..++.+++ ...|. ....|. ..+ .+|+++. |||= +-.+++.. .+...++|
T Consensus 182 kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVA-NILA----~vl~~La~-~~~~~lkp 255 (300)
T COG2264 182 KLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVA-NILA----EVLVELAP-DIKRLLKP 255 (300)
T ss_pred HcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEe-hhhH----HHHHHHHH-HHHHHcCC
Confidence 344456899998 778887776 33444 222332 333 3998876 6652 33456667 89999999
Q ss_pred CCCCCcchhhhhhhhhhcCCCc-cCCHHHHHHHHHhCCCeeeEEEecCCcce
Q 043665 76 NDEGRKTQLCFDLLMATFLNGK-EGSVYDWKKLFLAAGFSHYKITPNLGLWS 126 (132)
Q Consensus 76 ~g~~~~~~~~~dl~m~~~~~g~-~rt~~e~~~ll~~aGf~~~~~~~~~~~~~ 126 (132)
||-. + ..|- ..-.+...+-++++||.+.++....+..+
T Consensus 256 gg~l----------I---lSGIl~~q~~~V~~a~~~~gf~v~~~~~~~eW~~ 294 (300)
T COG2264 256 GGRL----------I---LSGILEDQAESVAEAYEQAGFEVVEVLEREEWVA 294 (300)
T ss_pred CceE----------E---EEeehHhHHHHHHHHHHhCCCeEeEEEecCCEEE
Confidence 8620 0 0111 12356788889999999998877644333
No 161
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=77.23 E-value=8.1 Score=27.28 Aligned_cols=70 Identities=11% Similarity=0.074 Sum_probs=42.8
Q ss_pred HHHHHHC-CCCeEEEeechhHHhhhcCCCCeEEEe--cccc---------CC--CceEEEehhhhc---CCCh------H
Q 043665 3 RAIATAF-PDIKCIVLICLLWWIIWWGTNNLEFFL--EFEA---------IP--PANVVLLKWILH---DWSD------E 59 (132)
Q Consensus 3 ~~l~~~~-P~l~~~v~Dlp~v~~~a~~~~ri~~~~--~~~~---------~P--~~D~~ll~~vlh---~~~d------e 59 (132)
..+++++ +..+++.+|+.... ...+++++. +.++ .+ .+|+++.....| .|+- +
T Consensus 48 ~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~ 123 (188)
T TIGR00438 48 QVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSID 123 (188)
T ss_pred HHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHH
Confidence 3455555 56788888885532 234566664 4331 33 399999743222 1221 2
Q ss_pred HHHHHHHHHhhhhCCCCC
Q 043665 60 ESLRYLKKKCEESIPSND 77 (132)
Q Consensus 60 ~~~~iL~~~~~~al~~~g 77 (132)
....+|+ .+++.|+|||
T Consensus 124 ~~~~~l~-~~~~~LkpgG 140 (188)
T TIGR00438 124 LVELALD-IAKEVLKPKG 140 (188)
T ss_pred HHHHHHH-HHHHHccCCC
Confidence 3467899 9999999997
No 162
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=77.01 E-value=8.6 Score=30.46 Aligned_cols=74 Identities=18% Similarity=0.113 Sum_probs=50.7
Q ss_pred ceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCC---C-CCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEE
Q 043665 44 ANVVLLKWILHDWSDEESLRYLKKKCEESIPSND---E-GRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKIT 119 (132)
Q Consensus 44 ~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g---~-~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 119 (132)
+|+|+.+..+. ...-....|. .+...|+||| + +|-.-..-|-.-...-.+-+.|.+++..+.+.-||++.+..
T Consensus 260 ~d~VvTcfFID--Ta~NileYi~-tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 260 YDVVVTCFFID--TAHNILEYID-TIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred cceEEEEEEee--chHHHHHHHH-HHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 89999886663 3334788999 9999999999 2 22222222211112234668999999999999999987755
Q ss_pred e
Q 043665 120 P 120 (132)
Q Consensus 120 ~ 120 (132)
-
T Consensus 337 ~ 337 (369)
T KOG2798|consen 337 G 337 (369)
T ss_pred e
Confidence 3
No 163
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=76.45 E-value=1.5 Score=33.21 Aligned_cols=104 Identities=8% Similarity=-0.122 Sum_probs=64.9
Q ss_pred EEEeech-hHHhhhcCC---CCeEEEe---cccc-CC-CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCCC---CCc
Q 043665 14 CIVLICL-LWWIIWWGT---NNLEFFL---EFEA-IP-PANVVLLKWILHDWSDEESLRYLKKKCEESIPSNDE---GRK 81 (132)
Q Consensus 14 ~~v~Dlp-~v~~~a~~~---~ri~~~~---~~~~-~P-~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g~---~~~ 81 (132)
.+.+|+. .+++.|.+. +++-.-. |.+. -+ .+|+|....||-+..+= -.++- -+...|+|||= +.+
T Consensus 150 ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~L--e~~~~-~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 150 LTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGAL--EGLFA-GAAGLLAPGGLFAFSVE 226 (287)
T ss_pred ccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcch--hhHHH-HHHHhcCCCceEEEEec
Confidence 4667773 477777663 3332222 4542 33 49999999999998874 45666 77999999991 111
Q ss_pred -chhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEec
Q 043665 82 -TQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITPN 121 (132)
Q Consensus 82 -~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 121 (132)
.....+ +++--..-...++.-.+++++..||.+.++.++
T Consensus 227 ~l~~~~~-f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 227 TLPDDGG-FVLGPSQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred ccCCCCC-eecchhhhhccchHHHHHHHHhcCceEEEeecc
Confidence 011112 111111223466778899999999999988654
No 164
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=76.32 E-value=19 Score=29.30 Aligned_cols=73 Identities=14% Similarity=0.092 Sum_probs=45.5
Q ss_pred HHHHHC-CCCeEEEeec-hhHHhhhcC------CCCeEEEe--ccc---cCC-CceEEEeh------h-------hhcCC
Q 043665 4 AIATAF-PDIKCIVLIC-LLWWIIWWG------TNNLEFFL--EFE---AIP-PANVVLLK------W-------ILHDW 56 (132)
Q Consensus 4 ~l~~~~-P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~---~~P-~~D~~ll~------~-------vlh~~ 56 (132)
.+++.. ++-+++.+|+ +..++.+++ ..+++++. ..+ ..+ .+|.+++- . +...|
T Consensus 254 ~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~ 333 (431)
T PRK14903 254 AIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRV 333 (431)
T ss_pred HHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhC
Confidence 445543 5678999998 667776654 23466665 322 123 38999861 1 22233
Q ss_pred ChHH-------HHHHHHHHhhhhCCCCC
Q 043665 57 SDEE-------SLRYLKKKCEESIPSND 77 (132)
Q Consensus 57 ~de~-------~~~iL~~~~~~al~~~g 77 (132)
+.++ -.+||. ++.+.|+|||
T Consensus 334 ~~~~~~~l~~~Q~~iL~-~a~~~LkpGG 360 (431)
T PRK14903 334 NKEDFKKLSEIQLRIVS-QAWKLLEKGG 360 (431)
T ss_pred CHHHHHHHHHHHHHHHH-HHHHhcCCCC
Confidence 3333 267899 9999999999
No 165
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=75.99 E-value=30 Score=27.19 Aligned_cols=117 Identities=15% Similarity=0.003 Sum_probs=69.0
Q ss_pred HHHHHCCCCeEEEeec-hhHHhhhcC--------CCCeEEEe------ccccC--C--CceEEEehhhhcCCChHH---H
Q 043665 4 AIATAFPDIKCIVLIC-LLWWIIWWG--------TNNLEFFL------EFEAI--P--PANVVLLKWILHDWSDEE---S 61 (132)
Q Consensus 4 ~l~~~~P~l~~~v~Dl-p~v~~~a~~--------~~ri~~~~------~~~~~--P--~~D~~ll~~vlh~~~de~---~ 61 (132)
-++.+.|+.+++..|+ |..++.|+. .+||++.. +|+.+ + .+|++++.==.|.=.++. +
T Consensus 131 lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~ 210 (321)
T PRK11727 131 LIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHASAAEARAGS 210 (321)
T ss_pred HHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEeCCCCcCcchhhccch
Confidence 4567788999999998 777887774 35777642 44432 3 399999987776654442 2
Q ss_pred HHHHHHHhhh------hCC----------CCCCC------Ccchh-hhh-hhhhhcCCCccCCHHHHHHHHHhCCCeeeE
Q 043665 62 LRYLKKKCEE------SIP----------SNDEG------RKTQL-CFD-LLMATFLNGKEGSVYDWKKLFLAAGFSHYK 117 (132)
Q Consensus 62 ~~iL~~~~~~------al~----------~~g~~------~~~~~-~~d-l~m~~~~~g~~rt~~e~~~ll~~aGf~~~~ 117 (132)
.+-.+ +.+. +|. +||+. -+.+. ... ...++..=|+.-+.+.+.+.|++.|.+.++
T Consensus 211 ~rk~r-~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l~~l~~~L~~~~~~~~~ 289 (321)
T PRK11727 211 QRKLR-NLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKENLPPLYRALKKVGAVEVK 289 (321)
T ss_pred hhHHh-hhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCCHHHHHHHHHHcCCceEE
Confidence 22233 2221 233 33320 00111 111 111122346777999999999999998777
Q ss_pred EEec
Q 043665 118 ITPN 121 (132)
Q Consensus 118 ~~~~ 121 (132)
+...
T Consensus 290 ~~e~ 293 (321)
T PRK11727 290 TIEM 293 (321)
T ss_pred EEEE
Confidence 7654
No 166
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=74.74 E-value=27 Score=28.26 Aligned_cols=75 Identities=11% Similarity=0.020 Sum_probs=48.4
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC-----CCCeEEEe--ccc--c-C-C-CceEEEehh------hh-------cC
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG-----TNNLEFFL--EFE--A-I-P-PANVVLLKW------IL-------HD 55 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-----~~ri~~~~--~~~--~-~-P-~~D~~ll~~------vl-------h~ 55 (132)
+..+++..++.+++.+|. |..++.+++ .-+++++. ..+ . . + .+|.+++-- ++ +.
T Consensus 259 t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~ 338 (427)
T PRK10901 259 TAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWL 338 (427)
T ss_pred HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCcccccc
Confidence 356777788789999998 777777765 22456655 443 1 2 2 389998421 11 12
Q ss_pred CChHH-------HHHHHHHHhhhhCCCCC
Q 043665 56 WSDEE-------SLRYLKKKCEESIPSND 77 (132)
Q Consensus 56 ~~de~-------~~~iL~~~~~~al~~~g 77 (132)
++.++ ..++|+ ++...|+|||
T Consensus 339 ~~~~~l~~l~~~q~~iL~-~a~~~LkpGG 366 (427)
T PRK10901 339 RRPEDIAALAALQSEILD-ALWPLLKPGG 366 (427)
T ss_pred CCHHHHHHHHHHHHHHHH-HHHHhcCCCC
Confidence 23332 347899 9999999998
No 167
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=74.29 E-value=20 Score=27.33 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=48.8
Q ss_pred HHHHHH-HCCCCeEEEeec-hhHHhhhcC-------CCCeEEEe--cccc-CC-CceEEEehhhhcCCChHHHHHHHHHH
Q 043665 2 ARAIAT-AFPDIKCIVLIC-LLWWIIWWG-------TNNLEFFL--EFEA-IP-PANVVLLKWILHDWSDEESLRYLKKK 68 (132)
Q Consensus 2 ~~~l~~-~~P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~--~~~~-~P-~~D~~ll~~vlh~~~de~~~~iL~~~ 68 (132)
+..|++ -.|.-+.+.+|. +.-.+.|++ .+||++.- ..+. .+ .+|++++ |.+|. -+.|. +
T Consensus 109 t~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~L-----Dmp~P--W~~le-~ 180 (256)
T COG2519 109 TAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFL-----DLPDP--WNVLE-H 180 (256)
T ss_pred HHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEE-----cCCCh--HHHHH-H
Confidence 445554 567788888886 556666664 56777776 4442 23 5999888 77775 57899 9
Q ss_pred hhhhCCCCC
Q 043665 69 CEESIPSND 77 (132)
Q Consensus 69 ~~~al~~~g 77 (132)
+.++|+|||
T Consensus 181 ~~~~Lkpgg 189 (256)
T COG2519 181 VSDALKPGG 189 (256)
T ss_pred HHHHhCCCc
Confidence 999999998
No 168
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=71.81 E-value=36 Score=24.85 Aligned_cols=111 Identities=15% Similarity=0.111 Sum_probs=69.9
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC-------CCCeEEEe--ccccCC--C-ceEEEehhhhcCCChHHHHHHHHHH
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG-------TNNLEFFL--EFEAIP--P-ANVVLLKWILHDWSDEESLRYLKKK 68 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~--~~~~~P--~-~D~~ll~~vlh~~~de~~~~iL~~~ 68 (132)
.+.|+++..--+++..|. |+-++.|++ .++|++.- =++.++ . .|++++.-+ .-+....||. +
T Consensus 12 pi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----GG~lI~~ILe-~ 86 (205)
T PF04816_consen 12 PIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----GGELIIEILE-A 86 (205)
T ss_dssp HHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----HHHHHHHHH-H
T ss_pred HHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----CHHHHHHHHH-h
Confidence 467888888889999998 778887775 67898887 466554 2 788877643 5566888888 5
Q ss_pred hhhhCCCCCCCCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEec--CC-cceEEEEE
Q 043665 69 CEESIPSNDEGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITPN--LG-LWSLIEAY 131 (132)
Q Consensus 69 ~~~al~~~g~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~--~~-~~~~ie~~ 131 (132)
....+++. ..+ ....+ ....++++||.+.||.+.+-.-+ .+ ...||.+.
T Consensus 87 ~~~~~~~~---------~~l--ILqP~---~~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~ 138 (205)
T PF04816_consen 87 GPEKLSSA---------KRL--ILQPN---THAYELRRWLYENGFEIIDEDLVEENGRFYEIIVAE 138 (205)
T ss_dssp TGGGGTT-----------EE--EEEES---S-HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEE
T ss_pred hHHHhccC---------CeE--EEeCC---CChHHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEE
Confidence 54433221 111 11111 45779999999999998765433 23 45666554
No 169
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=70.89 E-value=13 Score=30.00 Aligned_cols=63 Identities=8% Similarity=-0.002 Sum_probs=42.2
Q ss_pred EEEeechhHHhhhcC-------CCCeEEEe--ccc-cCCC-ceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCC
Q 043665 14 CIVLICLLWWIIWWG-------TNNLEFFL--EFE-AIPP-ANVVLLKWILHDWSDEESLRYLKKKCEESIPSND 77 (132)
Q Consensus 14 ~~v~Dlp~v~~~a~~-------~~ri~~~~--~~~-~~P~-~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g 77 (132)
+..++-.++.+.|+. .+||.+++ .-+ ++|+ +|+++---.=..+=.|...+--- .+++-|+|.|
T Consensus 203 vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL~NERMLEsYl-~Ark~l~P~G 276 (517)
T KOG1500|consen 203 VYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYMLVNERMLESYL-HARKWLKPNG 276 (517)
T ss_pred EEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhhhhHHHHHHHH-HHHhhcCCCC
Confidence 344444455555553 78999999 555 7896 99988654444444555555555 6788999999
No 170
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=70.31 E-value=9.1 Score=28.49 Aligned_cols=77 Identities=10% Similarity=0.090 Sum_probs=48.5
Q ss_pred cCCC--ceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCCC--CCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCee
Q 043665 40 AIPP--ANVVLLKWILHDWSDEESLRYLKKKCEESIPSNDE--GRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSH 115 (132)
Q Consensus 40 ~~P~--~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g~--~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~ 115 (132)
|++. .|+++++=-|..=+ -...|+ .+.+.|++||. ..+-.. +--+.+++.+.+++.||+.
T Consensus 117 PL~~~svDv~VfcLSLMGTn---~~~fi~-EA~RvLK~~G~L~IAEV~S------------Rf~~~~~F~~~~~~~GF~~ 180 (219)
T PF05148_consen 117 PLEDESVDVAVFCLSLMGTN---WPDFIR-EANRVLKPGGILKIAEVKS------------RFENVKQFIKALKKLGFKL 180 (219)
T ss_dssp S--TT-EEEEEEES---SS----HHHHHH-HHHHHEEEEEEEEEEEEGG------------G-S-HHHHHHHHHCTTEEE
T ss_pred cCCCCceeEEEEEhhhhCCC---cHHHHH-HHHheeccCcEEEEEEecc------------cCcCHHHHHHHHHHCCCeE
Confidence 6653 89999987776532 356788 89999999983 122111 1125789999999999999
Q ss_pred eEEEecCCcceEEEEEC
Q 043665 116 YKITPNLGLWSLIEAYP 132 (132)
Q Consensus 116 ~~~~~~~~~~~~ie~~p 132 (132)
......+....++|+++
T Consensus 181 ~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 181 KSKDESNKHFVLFEFKK 197 (219)
T ss_dssp EEEE--STTEEEEEEEE
T ss_pred EecccCCCeEEEEEEEE
Confidence 88765666677777653
No 171
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=70.19 E-value=17 Score=26.99 Aligned_cols=72 Identities=10% Similarity=-0.050 Sum_probs=45.5
Q ss_pred ceEEEeh---hhhcC--CChHHHHHHHHHHhhhhCCCCC-----CC--CcchhhhhhhhhhcCCCccCCHHHHHHHHHhC
Q 043665 44 ANVVLLK---WILHD--WSDEESLRYLKKKCEESIPSND-----EG--RKTQLCFDLLMATFLNGKEGSVYDWKKLFLAA 111 (132)
Q Consensus 44 ~D~~ll~---~vlh~--~~de~~~~iL~~~~~~al~~~g-----~~--~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~a 111 (132)
.|+++.. |++|. .....+-+.-+ .++++|+||| +. .......|...+ ..++..-..+..+++
T Consensus 123 ~d~~~~~~~yhdmh~k~i~~~~A~~vna-~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~-----~ri~~a~V~a~veaa 196 (238)
T COG4798 123 LDLVPTAQNYHDMHNKNIHPATAAKVNA-AVFKALKPGGVYLVEDHRADPGSGLSDTITL-----HRIDPAVVIAEVEAA 196 (238)
T ss_pred ccccccchhhhhhhccccCcchHHHHHH-HHHHhcCCCcEEEEEeccccCCCChhhhhhh-----cccChHHHHHHHHhh
Confidence 6777764 34443 34667888899 9999999999 21 111122222111 125677888999999
Q ss_pred CCeeeEEEec
Q 043665 112 GFSHYKITPN 121 (132)
Q Consensus 112 Gf~~~~~~~~ 121 (132)
||+...-+.+
T Consensus 197 GFkl~aeS~i 206 (238)
T COG4798 197 GFKLEAESEI 206 (238)
T ss_pred cceeeeeehh
Confidence 9998765443
No 172
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=69.97 E-value=36 Score=27.62 Aligned_cols=74 Identities=11% Similarity=0.005 Sum_probs=46.9
Q ss_pred HHHHHHC-CCCeEEEeec-hhHHhhhcC------CCCeEEEe--ccc-c----C-C-CceEEEeh------hhhcCCC--
Q 043665 3 RAIATAF-PDIKCIVLIC-LLWWIIWWG------TNNLEFFL--EFE-A----I-P-PANVVLLK------WILHDWS-- 57 (132)
Q Consensus 3 ~~l~~~~-P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~-~----~-P-~~D~~ll~------~vlh~~~-- 57 (132)
..+++.. +.-+++.+|. ++.++.+++ -++|+++. ..+ + . + .+|.|++- .+++..+
T Consensus 268 ~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~ 347 (434)
T PRK14901 268 THIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDA 347 (434)
T ss_pred HHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcch
Confidence 3455554 4468899998 667776654 24577776 322 1 1 2 38999972 2343333
Q ss_pred -----hHH-------HHHHHHHHhhhhCCCCC
Q 043665 58 -----DEE-------SLRYLKKKCEESIPSND 77 (132)
Q Consensus 58 -----de~-------~~~iL~~~~~~al~~~g 77 (132)
.++ -.++|+ ++.+.|+|||
T Consensus 348 ~~~~~~~~~~~l~~~Q~~iL~-~a~~~lkpgG 378 (434)
T PRK14901 348 RWRQTPEKIQELAPLQAELLE-SLAPLLKPGG 378 (434)
T ss_pred hhhCCHHHHHHHHHHHHHHHH-HHHHhcCCCC
Confidence 233 368899 9999999998
No 173
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=69.30 E-value=43 Score=26.06 Aligned_cols=87 Identities=9% Similarity=0.080 Sum_probs=56.4
Q ss_pred CCeEEEeccc-cCC--CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCCC--CCcchhhhhhhhhhcCCCccCCHHHH
Q 043665 30 NNLEFFLEFE-AIP--PANVVLLKWILHDWSDEESLRYLKKKCEESIPSNDE--GRKTQLCFDLLMATFLNGKEGSVYDW 104 (132)
Q Consensus 30 ~ri~~~~~~~-~~P--~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g~--~~~~~~~~dl~m~~~~~g~~rt~~e~ 104 (132)
+||..-.|-+ |++ ..|+.+++--|..-+ ....++ .+++.|++||. ..+ ..++--+..+|
T Consensus 212 ~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn---~~df~k-Ea~RiLk~gG~l~IAE------------v~SRf~dv~~f 275 (325)
T KOG3045|consen 212 ERVIACDMRNVPLEDESVDVAVFCLSLMGTN---LADFIK-EANRILKPGGLLYIAE------------VKSRFSDVKGF 275 (325)
T ss_pred CceeeccccCCcCccCcccEEEeeHhhhccc---HHHHHH-HHHHHhccCceEEEEe------------hhhhcccHHHH
Confidence 3443333555 555 389888876665432 345677 88999999983 111 12222334568
Q ss_pred HHHHHhCCCeeeEEEecCCcceEEEEEC
Q 043665 105 KKLFLAAGFSHYKITPNLGLWSLIEAYP 132 (132)
Q Consensus 105 ~~ll~~aGf~~~~~~~~~~~~~~ie~~p 132 (132)
..-|...||.+..+.-......++|+.+
T Consensus 276 ~r~l~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 276 VRALTKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred HHHHHHcCCeeeehhhhcceEEEEEEec
Confidence 8899999999988877777788887753
No 174
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=68.37 E-value=13 Score=29.19 Aligned_cols=35 Identities=14% Similarity=0.003 Sum_probs=28.7
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC-----CCCeEEEe
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG-----TNNLEFFL 36 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-----~~ri~~~~ 36 (132)
+.++++++|+.+.+.+|. |.+++.+.+ .+|+.++.
T Consensus 35 S~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~ 75 (310)
T PF01795_consen 35 SKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIH 75 (310)
T ss_dssp HHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEE
T ss_pred HHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEe
Confidence 468999999999999999 888888875 58999988
No 175
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=66.48 E-value=4.4 Score=23.61 Aligned_cols=11 Identities=36% Similarity=0.395 Sum_probs=9.1
Q ss_pred HHHHhCCCeee
Q 043665 106 KLFLAAGFSHY 116 (132)
Q Consensus 106 ~ll~~aGf~~~ 116 (132)
+||++|||..-
T Consensus 31 ~WL~~aGF~~G 41 (57)
T PF08845_consen 31 KWLEEAGFTIG 41 (57)
T ss_pred hhhHHhCCCCC
Confidence 68999999763
No 176
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=66.01 E-value=21 Score=28.05 Aligned_cols=66 Identities=8% Similarity=0.048 Sum_probs=41.8
Q ss_pred HHHHHHCCC-CeEEEeec-hhHHhhhcC------CCCeEEEe--ccccC---CCceEEEehhhhcCCChHHHHHHHHHHh
Q 043665 3 RAIATAFPD-IKCIVLIC-LLWWIIWWG------TNNLEFFL--EFEAI---PPANVVLLKWILHDWSDEESLRYLKKKC 69 (132)
Q Consensus 3 ~~l~~~~P~-l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~~~---P~~D~~ll~~vlh~~~de~~~~iL~~~~ 69 (132)
..+++..+. -+++.+|. |..++.+++ .+++.++. ..+.. ..+|++++..-+++. .. .+
T Consensus 96 ~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~i--------p~-~~ 166 (322)
T PRK13943 96 AVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGVDEV--------PE-TW 166 (322)
T ss_pred HHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCchHHh--------HH-HH
Confidence 445666653 46888897 677776664 35677776 44432 249999987544433 33 45
Q ss_pred hhhCCCCC
Q 043665 70 EESIPSND 77 (132)
Q Consensus 70 ~~al~~~g 77 (132)
.+.|+|||
T Consensus 167 ~~~LkpgG 174 (322)
T PRK13943 167 FTQLKEGG 174 (322)
T ss_pred HHhcCCCC
Confidence 55788888
No 177
>PHA03412 putative methyltransferase; Provisional
Probab=62.22 E-value=47 Score=25.10 Aligned_cols=110 Identities=7% Similarity=0.070 Sum_probs=60.8
Q ss_pred HHHHHHC---CCCeEEEeec-hhHHhhhcC-CCCeEEEe--ccc-cCC-CceEEEehhhhcCC--Ch--------HHHHH
Q 043665 3 RAIATAF---PDIKCIVLIC-LLWWIIWWG-TNNLEFFL--EFE-AIP-PANVVLLKWILHDW--SD--------EESLR 63 (132)
Q Consensus 3 ~~l~~~~---P~l~~~v~Dl-p~v~~~a~~-~~ri~~~~--~~~-~~P-~~D~~ll~~vlh~~--~d--------e~~~~ 63 (132)
..++++. +..+++.+|+ |..++.++. ..++.+.. ++. +.. .+|+|+..==.+.. .+ .-...
T Consensus 65 lala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~ 144 (241)
T PHA03412 65 FAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYK 144 (241)
T ss_pred HHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccccccCCcccccHHHHH
Confidence 4455543 4678999999 777888876 45677776 544 333 48998876332211 11 22456
Q ss_pred HHHHHhhhhCCCCC---CCCcchhhhhhhhhhcC-CCccCCHHHHHHHHHhCCCee
Q 043665 64 YLKKKCEESIPSND---EGRKTQLCFDLLMATFL-NGKEGSVYDWKKLFLAAGFSH 115 (132)
Q Consensus 64 iL~~~~~~al~~~g---~~~~~~~~~dl~m~~~~-~g~~rt~~e~~~ll~~aGf~~ 115 (132)
+++ ++.+.+++|+ |... .-|+..---.+ .-..-+-.++.++.++.|+..
T Consensus 145 li~-~A~~Ll~~G~~ILP~~~--~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (241)
T PHA03412 145 VIE-RASQIARQGTFIIPQMS--ANFRYSGTHYFRQDESTTSSKCKKFLDETGLEM 197 (241)
T ss_pred HHH-HHHHHcCCCEEEeCccc--ccCcccCccceeeccCcccHHHHHHHHhcCeee
Confidence 888 8888777765 2111 11111000000 001123467888889888754
No 178
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=61.50 E-value=14 Score=25.20 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=20.5
Q ss_pred CCCc-cCCHHHHHHHHHhCCCeeeEEEecCC
Q 043665 94 LNGK-EGSVYDWKKLFLAAGFSHYKITPNLG 123 (132)
Q Consensus 94 ~~g~-~rt~~e~~~ll~~aGf~~~~~~~~~~ 123 (132)
.||+ .-.-+|++++|+++||+.++..-..|
T Consensus 13 VGG~nki~MaeLr~~l~~~Gf~~V~Tyi~SG 43 (137)
T PF08002_consen 13 VGGKNKIKMAELREALEDLGFTNVRTYIQSG 43 (137)
T ss_dssp BTTBS---HHHHHHHHHHCT-EEEEEETTTT
T ss_pred cCCCCcccHHHHHHHHHHcCCCCceEEEeeC
Confidence 4564 46789999999999999988664444
No 179
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=59.62 E-value=16 Score=28.70 Aligned_cols=37 Identities=22% Similarity=0.173 Sum_probs=31.5
Q ss_pred HHHHHHHCCCCe-EEEeec-hhHHhhhcC-----CCCeEEEe-cc
Q 043665 2 ARAIATAFPDIK-CIVLIC-LLWWIIWWG-----TNNLEFFL-EF 38 (132)
Q Consensus 2 ~~~l~~~~P~l~-~~v~Dl-p~v~~~a~~-----~~ri~~~~-~~ 38 (132)
+.++++++|+.. .+.+|. |..++.+++ .+|++++. -|
T Consensus 38 S~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F 82 (314)
T COG0275 38 SRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNF 82 (314)
T ss_pred HHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcH
Confidence 568999999887 999999 889999886 67999988 44
No 180
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=58.36 E-value=30 Score=26.33 Aligned_cols=34 Identities=12% Similarity=0.385 Sum_probs=27.1
Q ss_pred cCCCceEEEehhhhcCCChHHHHHHHHHHhhhhCC
Q 043665 40 AIPPANVVLLKWILHDWSDEESLRYLKKKCEESIP 74 (132)
Q Consensus 40 ~~P~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~ 74 (132)
+++..|+++++|+|-..+++....+++ ++-+.+.
T Consensus 99 ~~~~~DLvi~s~~L~EL~~~~r~~lv~-~LW~~~~ 132 (274)
T PF09243_consen 99 PFPPDDLVIASYVLNELPSAARAELVR-SLWNKTA 132 (274)
T ss_pred cCCCCcEEEEehhhhcCCchHHHHHHH-HHHHhcc
Confidence 445579999999999999988888888 7755443
No 181
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=57.50 E-value=22 Score=25.10 Aligned_cols=66 Identities=11% Similarity=0.061 Sum_probs=45.3
Q ss_pred HHHHHCCCCeEEEeechhHHhhhcC---------CCCeEEEe--ccc-----cC------CC-ceEEEehhhhcCCChHH
Q 043665 4 AIATAFPDIKCIVLICLLWWIIWWG---------TNNLEFFL--EFE-----AI------PP-ANVVLLKWILHDWSDEE 60 (132)
Q Consensus 4 ~l~~~~P~l~~~v~Dlp~v~~~a~~---------~~ri~~~~--~~~-----~~------P~-~D~~ll~~vlh~~~de~ 60 (132)
.+...+++++..=+|+|.|++.-++ ..+.++++ +.+ .+ +. --++++-.++.+++.++
T Consensus 95 Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~~~~ 174 (183)
T PF04072_consen 95 RLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRPTLFIAEGVLMYLSPEQ 174 (183)
T ss_dssp HHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSEEEEEEESSGGGS-HHH
T ss_pred HhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCCeEEEEcchhhcCCHHH
Confidence 4555567899999999999986554 12355677 443 11 22 45788889999999999
Q ss_pred HHHHHHHHhh
Q 043665 61 SLRYLKKKCE 70 (132)
Q Consensus 61 ~~~iL~~~~~ 70 (132)
+..+|+ .++
T Consensus 175 ~~~ll~-~ia 183 (183)
T PF04072_consen 175 VDALLR-AIA 183 (183)
T ss_dssp HHHHHH-HH-
T ss_pred HHHHHH-HhC
Confidence 999998 653
No 182
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=56.93 E-value=32 Score=26.91 Aligned_cols=35 Identities=9% Similarity=-0.112 Sum_probs=28.2
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC-----CCCeEEEe
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG-----TNNLEFFL 36 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-----~~ri~~~~ 36 (132)
+..++++.|+.+.+.+|. |..++.+++ .+|++++.
T Consensus 35 S~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~ 75 (305)
T TIGR00006 35 SKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIH 75 (305)
T ss_pred HHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEe
Confidence 457888888899999998 778887765 46888887
No 183
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=56.07 E-value=43 Score=21.52 Aligned_cols=39 Identities=18% Similarity=0.063 Sum_probs=30.7
Q ss_pred CCCccCCHHHHHHHHHhCCCeeeE----EEecCCcceEEEEEC
Q 043665 94 LNGKEGSVYDWKKLFLAAGFSHYK----ITPNLGLWSLIEAYP 132 (132)
Q Consensus 94 ~~g~~rt~~e~~~ll~~aGf~~~~----~~~~~~~~~~ie~~p 132 (132)
-.|...+.+-+.+.|++.||++.. +....+..+.||+.|
T Consensus 7 krGf~~~~dri~~~l~e~g~~v~~eGD~ivas~pgis~ieik~ 49 (96)
T COG4004 7 KRGFKPDPDRIMRGLSELGWTVSEEGDRIVASSPGISRIEIKP 49 (96)
T ss_pred ccCCCCCHHHHHHHHHHhCeeEeecccEEEEecCCceEEEEec
Confidence 468889999999999999988753 455566788888764
No 184
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=55.98 E-value=17 Score=24.80 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=38.9
Q ss_pred CChHHHHHHHHHHhhhhCCCCC-----C----------------C----Ccchhhhhh------hhhhcCCCccCCHHHH
Q 043665 56 WSDEESLRYLKKKCEESIPSND-----E----------------G----RKTQLCFDL------LMATFLNGKEGSVYDW 104 (132)
Q Consensus 56 ~~de~~~~iL~~~~~~al~~~g-----~----------------~----~~~~~~~dl------~m~~~~~g~~rt~~e~ 104 (132)
++++++..+|. .....|..-| | . ......+++ .--+..|+.+-|.+|+
T Consensus 11 L~~~ea~~FL~-~~~~~L~~~Gi~V~lP~~w~~~~~~~l~l~~~~~~~~~~~~~~lgl~~l~~f~W~lalGd~~Ls~eEf 89 (141)
T PF12419_consen 11 LTTEEAYDFLT-EAAPRLRAAGIGVLLPSWWKKVRRPRLRLRAKATSPGGSSQSFLGLDQLLDFDWELALGDEELSEEEF 89 (141)
T ss_pred cCHHHHHHHHH-HHHHHHHHCCCeEEcCHHHhhccCCCcEEEEEeccCCCCCCCccChHHHhcceEEEEECCEECCHHHH
Confidence 68888999999 8888887777 1 0 011123333 3233469999999999
Q ss_pred HHHHHhCC
Q 043665 105 KKLFLAAG 112 (132)
Q Consensus 105 ~~ll~~aG 112 (132)
.+|+++..
T Consensus 90 ~~L~~~~~ 97 (141)
T PF12419_consen 90 EQLVEQKR 97 (141)
T ss_pred HHHHHcCC
Confidence 99999874
No 185
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=55.31 E-value=15 Score=20.61 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=13.8
Q ss_pred HHHHHHHHhCCCeeeEE
Q 043665 102 YDWKKLFLAAGFSHYKI 118 (132)
Q Consensus 102 ~e~~~ll~~aGf~~~~~ 118 (132)
+|+..+|+++||...+.
T Consensus 2 ~el~k~L~~~G~~~~r~ 18 (56)
T PF07927_consen 2 RELIKLLEKAGFEEVRQ 18 (56)
T ss_dssp HHHHHHHHHTT-EEEEE
T ss_pred hHHHHHHHHCCCEEecC
Confidence 58999999999998854
No 186
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=53.77 E-value=1.1e+02 Score=24.86 Aligned_cols=96 Identities=11% Similarity=-0.010 Sum_probs=52.8
Q ss_pred HHHHHHCCCCeEEEeec-hhHHhhhcC------CCCeEEEe--cccc-----CC--CceEEEehhhhcCCChHHHHHHHH
Q 043665 3 RAIATAFPDIKCIVLIC-LLWWIIWWG------TNNLEFFL--EFEA-----IP--PANVVLLKWILHDWSDEESLRYLK 66 (132)
Q Consensus 3 ~~l~~~~P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~~-----~P--~~D~~ll~~vlh~~~de~~~~iL~ 66 (132)
..+++.. .+++.+|. |..++.|+. .++++++. +.+. ++ .+|++++ |-|-.....+++
T Consensus 313 l~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~-----dPPr~g~~~~~~ 385 (443)
T PRK13168 313 LPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL-----DPPRAGAAEVMQ 385 (443)
T ss_pred HHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE-----CcCCcChHHHHH
Confidence 4455554 57889998 678877765 34688887 4331 22 3898876 333222334445
Q ss_pred HHhhhhCCCCCCCCcchhhhhhhhhhcCC--CccCCHHHHHHHHHhCCCeeeEEEecC
Q 043665 67 KKCEESIPSNDEGRKTQLCFDLLMATFLN--GKEGSVYDWKKLFLAAGFSHYKITPNL 122 (132)
Q Consensus 67 ~~~~~al~~~g~~~~~~~~~dl~m~~~~~--g~~rt~~e~~~ll~~aGf~~~~~~~~~ 122 (132)
.+.+ ++|++ ...+++| ...|....+ .+.||++.++.+..
T Consensus 386 -~l~~-~~~~~-----------ivyvSCnp~tlaRDl~~L----~~~gY~l~~i~~~D 426 (443)
T PRK13168 386 -ALAK-LGPKR-----------IVYVSCNPATLARDAGVL----VEAGYRLKRAGMLD 426 (443)
T ss_pred -HHHh-cCCCe-----------EEEEEeChHHhhccHHHH----hhCCcEEEEEEEec
Confidence 5444 45543 0011111 112444333 36799999998875
No 187
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=53.52 E-value=1.5e+02 Score=25.78 Aligned_cols=96 Identities=6% Similarity=0.014 Sum_probs=57.4
Q ss_pred CCeEEEeec-hhHHhhhcC-------C-CCeEEEe--cccc---CC-CceEEEehh--h-----h-cCC-ChHHHHHHHH
Q 043665 11 DIKCIVLIC-LLWWIIWWG-------T-NNLEFFL--EFEA---IP-PANVVLLKW--I-----L-HDW-SDEESLRYLK 66 (132)
Q Consensus 11 ~l~~~v~Dl-p~v~~~a~~-------~-~ri~~~~--~~~~---~P-~~D~~ll~~--v-----l-h~~-~de~~~~iL~ 66 (132)
.-+++.+|. +..++.+++ . ++++++. .++. .+ .+|+|++-- . + ..| ....-..+++
T Consensus 561 a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~ 640 (702)
T PRK11783 561 AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIK 640 (702)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHH
Confidence 346999998 677877765 2 5888887 5542 33 499999830 0 0 011 1123456888
Q ss_pred HHhhhhCCCCCCCCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEe
Q 043665 67 KKCEESIPSNDEGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITP 120 (132)
Q Consensus 67 ~~~~~al~~~g~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 120 (132)
.+.+.|+|||-. .++ ++....+ .-.+.+.++|+++..+..
T Consensus 641 -~a~~lL~~gG~l-----~~~------~~~~~~~--~~~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 641 -DAKRLLRPGGTL-----YFS------NNKRGFK--MDEEGLAKLGLKAEEITA 680 (702)
T ss_pred -HHHHHcCCCCEE-----EEE------eCCccCC--hhHHHHHhCCCeEEEEec
Confidence 888899998720 000 1111111 127788889999877753
No 188
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=52.57 E-value=14 Score=26.11 Aligned_cols=47 Identities=21% Similarity=0.205 Sum_probs=30.3
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC-------CCCeEEEe--cccc---CC--C-ceEEEeh
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG-------TNNLEFFL--EFEA---IP--P-ANVVLLK 50 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~--~~~~---~P--~-~D~~ll~ 50 (132)
++++++.+.+ ++.+|+ |..++.++. .+||.++. +++- +. . +|+++++
T Consensus 14 tIqFA~~~~~--Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 14 TIQFARTFDR--VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp HHHHHHTT-E--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred HHHHHHhCCe--EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 4677777644 777887 667776664 67999998 6652 22 2 6888875
No 189
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=52.47 E-value=39 Score=22.67 Aligned_cols=68 Identities=16% Similarity=0.124 Sum_probs=41.1
Q ss_pred CceEEEehhhh-----cCCChHHHHHHHHHHhhhhCCCCCCCCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeE
Q 043665 43 PANVVLLKWIL-----HDWSDEESLRYLKKKCEESIPSNDEGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYK 117 (132)
Q Consensus 43 ~~D~~ll~~vl-----h~~~de~~~~iL~~~~~~al~~~g~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~ 117 (132)
.+|++++--.= ..|+. .+++ ++++.+++||- ++.+. +..-.+.-|.++||.+.+
T Consensus 50 ~~Da~ylDgFsP~~nPelWs~----e~~~-~l~~~~~~~~~------------l~Tys----~a~~Vr~~L~~aGF~v~~ 108 (124)
T PF05430_consen 50 RFDAWYLDGFSPAKNPELWSE----ELFK-KLARLSKPGGT------------LATYS----SAGAVRRALQQAGFEVEK 108 (124)
T ss_dssp -EEEEEE-SS-TTTSGGGSSH----HHHH-HHHHHEEEEEE------------EEES------BHHHHHHHHHCTEEEEE
T ss_pred cCCEEEecCCCCcCCcccCCH----HHHH-HHHHHhCCCcE------------EEEee----chHHHHHHHHHcCCEEEE
Confidence 37877764221 23544 4777 78888887641 00000 023578899999999998
Q ss_pred EEecCCcceEEEEE
Q 043665 118 ITPNLGLWSLIEAY 131 (132)
Q Consensus 118 ~~~~~~~~~~ie~~ 131 (132)
+...++-...+.++
T Consensus 109 ~~g~g~Kr~~~~a~ 122 (124)
T PF05430_consen 109 VPGFGRKREMLRAV 122 (124)
T ss_dssp EE-STTSSEEEEEE
T ss_pred cCCCCCcchheEEE
Confidence 88777766666654
No 190
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=50.52 E-value=22 Score=25.73 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=25.7
Q ss_pred ceEEEehhhhcCCCh----------HHHHHHHHHHhhhhCCCCC
Q 043665 44 ANVVLLKWILHDWSD----------EESLRYLKKKCEESIPSND 77 (132)
Q Consensus 44 ~D~~ll~~vlh~~~d----------e~~~~iL~~~~~~al~~~g 77 (132)
.|++.+.+.|||++- +--.++.+ ++.+.|+++.
T Consensus 51 ~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~-rLk~~lp~~a 93 (183)
T cd01842 51 LDLVIMNSCLWDLSRYQRNSMKTYRENLERLFS-KLDSVLPIEC 93 (183)
T ss_pred eeEEEEecceecccccCCCCHHHHHHHHHHHHH-HHHhhCCCcc
Confidence 899999999999865 33456666 7777888876
No 191
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=49.33 E-value=43 Score=24.85 Aligned_cols=62 Identities=10% Similarity=0.042 Sum_probs=38.5
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC----CCCeEEEe--ccc-cCCCce--EEEehhhhcCCChHHHHHHH
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG----TNNLEFFL--EFE-AIPPAN--VVLLKWILHDWSDEESLRYL 65 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~----~~ri~~~~--~~~-~~P~~D--~~ll~~vlh~~~de~~~~iL 65 (132)
+..++++.+. ++.+|. +..++.++. .++++++. +.+ +.+.+| .++++|.-++++.+-..++|
T Consensus 44 t~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~~~~vvsNlPy~i~~~il~~ll 115 (253)
T TIGR00755 44 TEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPKQLKVVSNLPYNISSPLIFKLL 115 (253)
T ss_pred HHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCCcceEEEcCChhhHHHHHHHHh
Confidence 4567777764 777887 556666654 36788877 544 444444 56677777666555444444
No 192
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=48.91 E-value=19 Score=23.64 Aligned_cols=28 Identities=29% Similarity=0.182 Sum_probs=22.9
Q ss_pred hhhcCCCccCCHHHHHHHHHhCCCeeeE
Q 043665 90 MATFLNGKEGSVYDWKKLFLAAGFSHYK 117 (132)
Q Consensus 90 m~~~~~g~~rt~~e~~~ll~~aGf~~~~ 117 (132)
+++..+|.+.|.+++.++|+.+|-.+..
T Consensus 8 Lll~~~g~~~ta~~I~~IL~aaGveVe~ 35 (105)
T cd04411 8 LLLHKGGKELTEDKIKELLSAAGAEIEP 35 (105)
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCCCcCH
Confidence 4445688889999999999999977654
No 193
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=48.79 E-value=19 Score=23.74 Aligned_cols=29 Identities=28% Similarity=0.221 Sum_probs=23.3
Q ss_pred hhhcCCCccCCHHHHHHHHHhCCCeeeEE
Q 043665 90 MATFLNGKEGSVYDWKKLFLAAGFSHYKI 118 (132)
Q Consensus 90 m~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 118 (132)
+++..+|++.|.+.+.++|+.+|-.+...
T Consensus 8 LLL~~~g~~it~e~I~~IL~AAGveVee~ 36 (106)
T PRK06402 8 LLLHSAGKEINEDNLKKVLEAAGVEVDEA 36 (106)
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCCCccHH
Confidence 34456888999999999999999776543
No 194
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=48.02 E-value=34 Score=26.54 Aligned_cols=35 Identities=11% Similarity=-0.101 Sum_probs=28.4
Q ss_pred HHHHHHHCC-CCeEEEeec-hhHHhhhcC----CCCeEEEe
Q 043665 2 ARAIATAFP-DIKCIVLIC-LLWWIIWWG----TNNLEFFL 36 (132)
Q Consensus 2 ~~~l~~~~P-~l~~~v~Dl-p~v~~~a~~----~~ri~~~~ 36 (132)
+..+++++| +.+++.+|. |.+++.+++ .+|++++.
T Consensus 34 S~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~ 74 (296)
T PRK00050 34 SRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVH 74 (296)
T ss_pred HHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEe
Confidence 457888886 789999999 888888875 35898888
No 195
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=47.94 E-value=50 Score=25.31 Aligned_cols=90 Identities=13% Similarity=0.079 Sum_probs=54.1
Q ss_pred eEEEeec-hhHHhhhcC--------CCCeEEEe--ccc---cCCC--ceEEEehhhhcCCC------hHHHHHHHHHHhh
Q 043665 13 KCIVLIC-LLWWIIWWG--------TNNLEFFL--EFE---AIPP--ANVVLLKWILHDWS------DEESLRYLKKKCE 70 (132)
Q Consensus 13 ~~~v~Dl-p~v~~~a~~--------~~ri~~~~--~~~---~~P~--~D~~ll~~vlh~~~------de~~~~iL~~~~~ 70 (132)
.++-++- |.|++.|.- ..+|+.+. .++ .++. +|++ +||-| .-.+.++-+ .++
T Consensus 159 ~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI-----iHDPPRfS~AgeLYseefY~-El~ 232 (287)
T COG2521 159 HVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI-----IHDPPRFSLAGELYSEEFYR-ELY 232 (287)
T ss_pred EEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE-----eeCCCccchhhhHhHHHHHH-HHH
Confidence 3333333 677776653 33566665 443 4552 7754 56632 223567778 888
Q ss_pred hhCCCCCC------CC-cchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEEEe
Q 043665 71 ESIPSNDE------GR-KTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKITP 120 (132)
Q Consensus 71 ~al~~~g~------~~-~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 120 (132)
+.|+|||. .| ....-.|+ .......|+++||.+++...
T Consensus 233 RiLkrgGrlFHYvG~Pg~ryrG~d~------------~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 233 RILKRGGRLFHYVGNPGKRYRGLDL------------PKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred HHcCcCCcEEEEeCCCCcccccCCh------------hHHHHHHHHhcCceeeeeeh
Confidence 99999982 11 12233333 46788999999999776543
No 196
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=47.86 E-value=12 Score=28.10 Aligned_cols=76 Identities=16% Similarity=0.086 Sum_probs=47.0
Q ss_pred CceEEEehhhhcCCChHHHHHHHHHHhhhhCCC-CC--------CC---Ccc---hhhhhhhhhhcCCCccCCH--HHHH
Q 043665 43 PANVVLLKWILHDWSDEESLRYLKKKCEESIPS-ND--------EG---RKT---QLCFDLLMATFLNGKEGSV--YDWK 105 (132)
Q Consensus 43 ~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~-~g--------~~---~~~---~~~~dl~m~~~~~g~~rt~--~e~~ 105 (132)
++|++++-|+|.-..| --++|+ -+..+++| +| |. -++ ....--.-+...+|+.+.+ ..+.
T Consensus 169 k~dli~clNlLDRc~~--p~kLL~-Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~ 245 (288)
T KOG3987|consen 169 KLDLILCLNLLDRCFD--PFKLLE-DIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFM 245 (288)
T ss_pred eeehHHHHHHHHhhcC--hHHHHH-HHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHH
Confidence 3899999999976655 478999 99999998 55 21 110 0000000111235553322 3467
Q ss_pred HHHHhCCCeeeEEEec
Q 043665 106 KLFLAAGFSHYKITPN 121 (132)
Q Consensus 106 ~ll~~aGf~~~~~~~~ 121 (132)
++|+.+||.+......
T Consensus 246 e~lr~~g~~veawTrl 261 (288)
T KOG3987|consen 246 ELLRNCGYRVEAWTRL 261 (288)
T ss_pred HHHHhcCchhhhhhcC
Confidence 8999999998876554
No 197
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=47.14 E-value=58 Score=23.78 Aligned_cols=61 Identities=10% Similarity=0.041 Sum_probs=33.9
Q ss_pred eEEEeec-hhHHhhhcC---------------CCCeEEEe--cccc------CCCceEEEehhhhcCCChHHHHHHHHHH
Q 043665 13 KCIVLIC-LLWWIIWWG---------------TNNLEFFL--EFEA------IPPANVVLLKWILHDWSDEESLRYLKKK 68 (132)
Q Consensus 13 ~~~v~Dl-p~v~~~a~~---------------~~ri~~~~--~~~~------~P~~D~~ll~~vlh~~~de~~~~iL~~~ 68 (132)
+++.+++ |...+.+.. ..++++.. |+++ +..||++++.+.+ |+++...+| + +
T Consensus 68 ~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L-~-~ 143 (205)
T PF08123_consen 68 KSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLAL-A-E 143 (205)
T ss_dssp EEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHH-H-H
T ss_pred EEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHH-H-H
Confidence 3788886 444444432 34666666 7652 3469999999986 677766666 5 5
Q ss_pred hhhhCCCCC
Q 043665 69 CEESIPSND 77 (132)
Q Consensus 69 ~~~al~~~g 77 (132)
....|++|.
T Consensus 144 ~~~~lk~G~ 152 (205)
T PF08123_consen 144 LLLELKPGA 152 (205)
T ss_dssp HHTTS-TT-
T ss_pred HHhcCCCCC
Confidence 566789887
No 198
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=46.91 E-value=27 Score=26.27 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHhCCCeeeEEEe
Q 043665 99 GSVYDWKKLFLAAGFSHYKITP 120 (132)
Q Consensus 99 rt~~e~~~ll~~aGf~~~~~~~ 120 (132)
-+.+.|+..|+++||++.....
T Consensus 216 ddedswk~il~~~G~~v~~~l~ 237 (265)
T COG4822 216 DDEDSWKNILEKNGFKVEVYLH 237 (265)
T ss_pred cchHHHHHHHHhCCceeEEEee
Confidence 4568999999999999865443
No 199
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=46.82 E-value=30 Score=20.26 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.4
Q ss_pred CCccCCHHHHHHHHHhCCCeee
Q 043665 95 NGKEGSVYDWKKLFLAAGFSHY 116 (132)
Q Consensus 95 ~g~~rt~~e~~~ll~~aGf~~~ 116 (132)
-|...+.++..++|+..||+..
T Consensus 15 lG~~i~~~ei~~~L~~lg~~~~ 36 (71)
T smart00874 15 LGLDLSAEEIEEILKRLGFEVE 36 (71)
T ss_pred HCCCCCHHHHHHHHHHCCCeEE
Confidence 4678899999999999999874
No 200
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=45.07 E-value=23 Score=23.25 Aligned_cols=27 Identities=26% Similarity=0.190 Sum_probs=21.8
Q ss_pred hhhcCCCccCCHHHHHHHHHhCCCeee
Q 043665 90 MATFLNGKEGSVYDWKKLFLAAGFSHY 116 (132)
Q Consensus 90 m~~~~~g~~rt~~e~~~ll~~aGf~~~ 116 (132)
+++..+|...|.+.+..+|+.+|-.+.
T Consensus 8 Lll~~~g~~iT~e~I~~IL~AAGv~ve 34 (105)
T TIGR03685 8 LLLHSAGKEINEENLKAVLEAAGVEVD 34 (105)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhCCccc
Confidence 444568889999999999999995543
No 201
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=44.54 E-value=23 Score=23.33 Aligned_cols=27 Identities=30% Similarity=0.271 Sum_probs=21.9
Q ss_pred hhhcCCCccCCHHHHHHHHHhCCCeee
Q 043665 90 MATFLNGKEGSVYDWKKLFLAAGFSHY 116 (132)
Q Consensus 90 m~~~~~g~~rt~~e~~~ll~~aGf~~~ 116 (132)
+++..+|++.|.+.+..+|+.+|-.+.
T Consensus 8 LLL~~~G~eITae~I~~IL~AAGveVd 34 (106)
T cd05832 8 LLLHYAGKEINEENLKKVLEAAGIEVD 34 (106)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhCCccc
Confidence 444568889999999999999995543
No 202
>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.
Probab=44.54 E-value=14 Score=20.41 Aligned_cols=22 Identities=18% Similarity=0.474 Sum_probs=17.0
Q ss_pred CccCCHHHHHHHHHhCCCeeeE
Q 043665 96 GKEGSVYDWKKLFLAAGFSHYK 117 (132)
Q Consensus 96 g~~rt~~e~~~ll~~aGf~~~~ 117 (132)
+...-..||+++|.++|.+..+
T Consensus 23 ~f~glP~eW~~ll~~sgis~~e 44 (46)
T cd01093 23 EFTGLPEEWQRLLKSSGITKEE 44 (46)
T ss_pred cccCCCHHHHHHHHHcCCCHHH
Confidence 3455679999999999987543
No 203
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=44.17 E-value=60 Score=24.90 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=44.2
Q ss_pred CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCCCC----Ccchhh----hhhhhhh--cCCCccCC------HHHHHH
Q 043665 43 PANVVLLKWILHDWSDEESLRYLKKKCEESIPSNDEG----RKTQLC----FDLLMAT--FLNGKEGS------VYDWKK 106 (132)
Q Consensus 43 ~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g~~----~~~~~~----~dl~m~~--~~~g~~rt------~~e~~~ 106 (132)
+.|+++-+--+|-.+| -..-.. +|..+++|+|.- -...++ -++++.- --||.... ..+.-.
T Consensus 137 s~DLiisSlslHW~Nd--LPg~m~-~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~ 213 (325)
T KOG2940|consen 137 SVDLIISSLSLHWTND--LPGSMI-QCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGN 213 (325)
T ss_pred chhhhhhhhhhhhhcc--CchHHH-HHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhh
Confidence 3999999999984454 345566 799999999930 001111 1222111 12443322 357778
Q ss_pred HHHhCCCeeeEE
Q 043665 107 LFLAAGFSHYKI 118 (132)
Q Consensus 107 ll~~aGf~~~~~ 118 (132)
||..|||....+
T Consensus 214 LL~rAGF~m~tv 225 (325)
T KOG2940|consen 214 LLTRAGFSMLTV 225 (325)
T ss_pred HHhhcCccccee
Confidence 999999997554
No 204
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=44.15 E-value=1.1e+02 Score=22.83 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=38.2
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC----CCCeEEEe--ccc-cCCCceEEEehhhhcCCChHHHHHHH
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG----TNNLEFFL--EFE-AIPPANVVLLKWILHDWSDEESLRYL 65 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~----~~ri~~~~--~~~-~~P~~D~~ll~~vlh~~~de~~~~iL 65 (132)
+..++++ ..+++++|+ +..++.+++ .++++++. +++ ++|.+|.+ ++|.-++++.+...+++
T Consensus 44 t~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~V-v~NlPy~i~s~~~~~l~ 112 (258)
T PRK14896 44 TDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNKV-VSNLPYQISSPITFKLL 112 (258)
T ss_pred HHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceEE-EEcCCcccCcHHHHHHH
Confidence 3456665 347899998 567766654 46888887 655 56667755 45666666544433333
No 205
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=43.01 E-value=6.7 Score=32.71 Aligned_cols=36 Identities=14% Similarity=0.281 Sum_probs=30.7
Q ss_pred cCCC--ceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCC
Q 043665 40 AIPP--ANVVLLKWILHDWSDEESLRYLKKKCEESIPSND 77 (132)
Q Consensus 40 ~~P~--~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g 77 (132)
|+|. +|++..++++..|...+. .+|- .+-+.|+|||
T Consensus 176 Pfp~~~fDmvHcsrc~i~W~~~~g-~~l~-evdRvLRpGG 213 (506)
T PF03141_consen 176 PFPSNAFDMVHCSRCLIPWHPNDG-FLLF-EVDRVLRPGG 213 (506)
T ss_pred cCCccchhhhhcccccccchhccc-ceee-hhhhhhccCc
Confidence 5663 999999999999988874 5666 7999999999
No 206
>PF13592 HTH_33: Winged helix-turn helix
Probab=42.75 E-value=21 Score=20.50 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=21.9
Q ss_pred CccCCHHHHHHHHHhCCCeeeEEEec
Q 043665 96 GKEGSVYDWKKLFLAAGFSHYKITPN 121 (132)
Q Consensus 96 g~~rt~~e~~~ll~~aGf~~~~~~~~ 121 (132)
|..+|..-+..+|.+.||+..+-.+.
T Consensus 19 gv~ys~~~v~~lL~r~G~s~~kp~~~ 44 (60)
T PF13592_consen 19 GVKYSPSGVYRLLKRLGFSYQKPRPR 44 (60)
T ss_pred CCEEcHHHHHHHHHHcCCccccCCCC
Confidence 66789999999999999998775544
No 207
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=42.58 E-value=65 Score=19.04 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=16.8
Q ss_pred CCccCCHHHHHHHHHhCCCeeeEE
Q 043665 95 NGKEGSVYDWKKLFLAAGFSHYKI 118 (132)
Q Consensus 95 ~g~~rt~~e~~~ll~~aGf~~~~~ 118 (132)
-|...+.++..++|+..||+....
T Consensus 15 lG~~i~~~~i~~~L~~lg~~~~~~ 38 (70)
T PF03484_consen 15 LGIDISPEEIIKILKRLGFKVEKI 38 (70)
T ss_dssp HTS---HHHHHHHHHHTT-EEEE-
T ss_pred hCCCCCHHHHHHHHHHCCCEEEEC
Confidence 367889999999999999998764
No 208
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=41.59 E-value=48 Score=20.68 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=20.7
Q ss_pred ccCCHHHHHHHHHhCCCeeeEEEec
Q 043665 97 KEGSVYDWKKLFLAAGFSHYKITPN 121 (132)
Q Consensus 97 ~~rt~~e~~~ll~~aGf~~~~~~~~ 121 (132)
-+-++.+.++.|++.||+++....-
T Consensus 6 VE~~Ls~v~~~L~~~GyeVv~l~~~ 30 (80)
T PF03698_consen 6 VEEGLSNVKEALREKGYEVVDLENE 30 (80)
T ss_pred ecCCchHHHHHHHHCCCEEEecCCc
Confidence 3567889999999999999887644
No 209
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=40.61 E-value=47 Score=25.40 Aligned_cols=61 Identities=7% Similarity=0.026 Sum_probs=41.3
Q ss_pred eEEEeec-hhHHhhhcCCCCeEEE--e--ccc----c-C--CC-ceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCC
Q 043665 13 KCIVLIC-LLWWIIWWGTNNLEFF--L--EFE----A-I--PP-ANVVLLKWILHDWSDEESLRYLKKKCEESIPSND 77 (132)
Q Consensus 13 ~~~v~Dl-p~v~~~a~~~~ri~~~--~--~~~----~-~--P~-~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g 77 (132)
++|..|. +..++.+.+..+++.. + |-+ + + ++ .|+|.....+|-++-+. ..+ .+++.|+++|
T Consensus 57 ~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFdle~---fy~-~~~rvLRk~G 130 (261)
T KOG3010|consen 57 EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFDLER---FYK-EAYRVLRKDG 130 (261)
T ss_pred hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhchHH---HHH-HHHHHcCCCC
Confidence 3566776 5677777775444433 2 442 1 2 33 89999999999988764 566 7777887777
No 210
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=39.80 E-value=1.2e+02 Score=20.82 Aligned_cols=61 Identities=10% Similarity=0.058 Sum_probs=37.9
Q ss_pred HHHHHHCCCCeEEEeec-hhHHhhhcC----CCCeEEEe--ccc-cCCC--ceEEEehhhhcCCChHHHHHHHH
Q 043665 3 RAIATAFPDIKCIVLIC-LLWWIIWWG----TNNLEFFL--EFE-AIPP--ANVVLLKWILHDWSDEESLRYLK 66 (132)
Q Consensus 3 ~~l~~~~P~l~~~v~Dl-p~v~~~a~~----~~ri~~~~--~~~-~~P~--~D~~ll~~vlh~~~de~~~~iL~ 66 (132)
..++++ ..+++.+|. |..++.+++ .++++++. +++ +.+. +|.+ +++..++.+.+...++++
T Consensus 29 ~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~v-i~n~Py~~~~~~i~~~l~ 99 (169)
T smart00650 29 EELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKV-VGNLPYNISTPILFKLLE 99 (169)
T ss_pred HHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEE-EECCCcccHHHHHHHHHh
Confidence 455555 568899998 557776654 35888887 555 3443 6765 456766665544444444
No 211
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=39.25 E-value=62 Score=29.73 Aligned_cols=83 Identities=17% Similarity=0.097 Sum_probs=53.2
Q ss_pred ceEEEehhhhcCCChHHHHHHHHHHhhhhC-CCCC---C-----CCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCe
Q 043665 44 ANVVLLKWILHDWSDEESLRYLKKKCEESI-PSND---E-----GRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFS 114 (132)
Q Consensus 44 ~D~~ll~~vlh~~~de~~~~iL~~~~~~al-~~~g---~-----~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~ 114 (132)
.|..|-+||=|.|+-+...+.|. +....+ ..+| + ....+..+=+...+....+....+++++.|++.|+.
T Consensus 858 ~D~~w~~hI~~rW~ge~~r~~L~-~l~~~~~~~~~~~~~~l~~Q~~~~q~~~k~SY~v~d~~~~~~v~elr~~Lr~~gLr 936 (1050)
T TIGR02468 858 ADQDYHSHIEYRWGGEGLRKTLV-KWAASINEKKGENEEQIVEEDEESSTDHCYAFKVKDPSKVPPVKELRKLLRIQGLR 936 (1050)
T ss_pred ECHHHHHHHHccCCcHHHHHHHH-HHhhhcccccccccccceecChhhCCCceEEEEecCcccCccHHHHHHHHHhCCCc
Confidence 45556778999999998888887 766644 1122 1 112233333333333456678899999999999999
Q ss_pred eeEEEecC-CcceE
Q 043665 115 HYKITPNL-GLWSL 127 (132)
Q Consensus 115 ~~~~~~~~-~~~~~ 127 (132)
..-+...+ ..+.|
T Consensus 937 ~~~iys~~~~~LDV 950 (1050)
T TIGR02468 937 CHAVYCRNGTRLNV 950 (1050)
T ss_pred eEEEeecCCcEeee
Confidence 87665443 33444
No 212
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=39.00 E-value=42 Score=27.61 Aligned_cols=69 Identities=12% Similarity=0.113 Sum_probs=44.0
Q ss_pred HHCCCCeEEEeec-hhHHhhhc-----C--CCCeEEEe--ccc-cCCC-ceEEEehhhhcCCCh-HHHHHHHHHHhhhhC
Q 043665 7 TAFPDIKCIVLIC-LLWWIIWW-----G--TNNLEFFL--EFE-AIPP-ANVVLLKWILHDWSD-EESLRYLKKKCEESI 73 (132)
Q Consensus 7 ~~~P~l~~~v~Dl-p~v~~~a~-----~--~~ri~~~~--~~~-~~P~-~D~~ll~~vlh~~~d-e~~~~iL~~~~~~al 73 (132)
+..-..++..++- |..+...+ . .++|+++. +.+ ..|. +|+++--..= .+.+ |-..+.|. .+.+-|
T Consensus 210 ~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLG-sfg~nEl~pE~Ld-a~~rfL 287 (448)
T PF05185_consen 210 RAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLG-SFGDNELSPECLD-AADRFL 287 (448)
T ss_dssp HHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---B-TTBTTTSHHHHHH-HGGGGE
T ss_pred HhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccC-CccccccCHHHHH-HHHhhc
Confidence 3344567777776 43332221 1 68999998 666 5674 9988765443 3433 45677788 888899
Q ss_pred CCCC
Q 043665 74 PSND 77 (132)
Q Consensus 74 ~~~g 77 (132)
+|+|
T Consensus 288 kp~G 291 (448)
T PF05185_consen 288 KPDG 291 (448)
T ss_dssp EEEE
T ss_pred CCCC
Confidence 9999
No 213
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=37.67 E-value=86 Score=21.74 Aligned_cols=42 Identities=19% Similarity=0.090 Sum_probs=32.9
Q ss_pred HHHHHHHCCCCeEEEeec---hhHHhhhcC-CCCeEEEe-ccccCCC
Q 043665 2 ARAIATAFPDIKCIVLIC---LLWWIIWWG-TNNLEFFL-EFEAIPP 43 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl---p~v~~~a~~-~~ri~~~~-~~~~~P~ 43 (132)
...+.+.+|+-+.++.|| +.-++..+. ..++++.. -+...|.
T Consensus 80 i~si~~~~P~~k~ilY~LgL~~~~i~~L~~~~~n~evr~Fn~s~YP~ 126 (142)
T PF07801_consen 80 ISSIRKFYPNHKIILYDLGLSEEQIKKLKKNFCNVEVRKFNFSKYPK 126 (142)
T ss_pred HHHHHHHCCCCcEEEEeCCCCHHHHHHHHhcCCceEEEECCCccCcH
Confidence 356788999999999998 556666666 48899999 6677775
No 214
>PRK13605 endoribonuclease SymE; Provisional
Probab=37.28 E-value=40 Score=22.46 Aligned_cols=12 Identities=33% Similarity=0.393 Sum_probs=9.9
Q ss_pred HHHHHhCCCeee
Q 043665 105 KKLFLAAGFSHY 116 (132)
Q Consensus 105 ~~ll~~aGf~~~ 116 (132)
-.||++|||..-
T Consensus 44 G~WLeeAGF~tG 55 (113)
T PRK13605 44 GQWLEAAGFATG 55 (113)
T ss_pred chhHHhhCCCCC
Confidence 469999999963
No 215
>PHA00457 inhibitor of host bacterial RNA polymerase
Probab=37.10 E-value=47 Score=19.60 Aligned_cols=14 Identities=36% Similarity=0.793 Sum_probs=11.5
Q ss_pred HHhCCCeeeEEEec
Q 043665 108 FLAAGFSHYKITPN 121 (132)
Q Consensus 108 l~~aGf~~~~~~~~ 121 (132)
-+.+||.+.+|+|-
T Consensus 47 Y~~aGf~VtRiRP~ 60 (63)
T PHA00457 47 YVPAGFVVTRIRPE 60 (63)
T ss_pred hhccCcEEEEeccc
Confidence 45789999999874
No 216
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=36.58 E-value=42 Score=31.95 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=25.2
Q ss_pred HHHHHHHhCCCee----eEEEecCCcceEEEEEC
Q 043665 103 DWKKLFLAAGFSH----YKITPNLGLWSLIEAYP 132 (132)
Q Consensus 103 e~~~ll~~aGf~~----~~~~~~~~~~~~ie~~p 132 (132)
-++++++++|+.+ .+|.+++..++|||+.|
T Consensus 1568 lf~~if~~~gLd~~lfPYrV~aT~pGcGVIEviP 1601 (1803)
T KOG0902|consen 1568 LFKNIFQLVGLDLYLFPYRVVATAPGCGVIEVIP 1601 (1803)
T ss_pred HHHHHHHHcCCceEEeeeeeeccCCCCceEEeCC
Confidence 4678899999875 46788888999999988
No 217
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=36.12 E-value=52 Score=19.13 Aligned_cols=30 Identities=13% Similarity=0.279 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHhCCCeeeEEEecCCcceEE
Q 043665 99 GSVYDWKKLFLAAGFSHYKITPNLGLWSLI 128 (132)
Q Consensus 99 rt~~e~~~ll~~aGf~~~~~~~~~~~~~~i 128 (132)
-+..++..++++.|+++..+...++.+.++
T Consensus 38 ~~~~di~~~~~~~g~~~~~~~~~~~~~~i~ 67 (70)
T PF01206_consen 38 AAVEDIPRWCEENGYEVVEVEEEGGEYRIL 67 (70)
T ss_dssp THHHHHHHHHHHHTEEEEEEEESSSSEEEE
T ss_pred cHHHHHHHHHHHCCCEEEEEEEeCCEEEEE
Confidence 346789999999999999888866555443
No 218
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=36.11 E-value=74 Score=24.94 Aligned_cols=31 Identities=26% Similarity=0.440 Sum_probs=24.2
Q ss_pred HHHHHHHHhCCCe----eeEEEecCCcceEEEEEC
Q 043665 102 YDWKKLFLAAGFS----HYKITPNLGLWSLIEAYP 132 (132)
Q Consensus 102 ~e~~~ll~~aGf~----~~~~~~~~~~~~~ie~~p 132 (132)
.-+..++++.|+. ..++.+++...++||++|
T Consensus 75 ~lm~~i~~~~~ldl~l~~Y~vi~t~~~~GlIE~V~ 109 (311)
T cd05167 75 SLFKNIFQSAGLDLYLFPYRVVATGPGCGVIEVVP 109 (311)
T ss_pred HHHHHHHHHCCCCeEeEEEeEEecCCCceEEEEeC
Confidence 3566777888853 457889988999999987
No 219
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=36.10 E-value=74 Score=18.22 Aligned_cols=26 Identities=19% Similarity=-0.032 Sum_probs=19.2
Q ss_pred ccCCHHHHHHHHHhCCCeeeEEEecC
Q 043665 97 KEGSVYDWKKLFLAAGFSHYKITPNL 122 (132)
Q Consensus 97 ~~rt~~e~~~ll~~aGf~~~~~~~~~ 122 (132)
...+.+++.+..++.|++...+..-.
T Consensus 13 ~~~~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 13 GALSPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred ccCCHHHHHHHHHHcCCCEEEEeeCC
Confidence 34678888888888888877776543
No 220
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.77 E-value=60 Score=20.38 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=22.5
Q ss_pred CCCccCCHHHHHHHHHhCCCeeeEE
Q 043665 94 LNGKEGSVYDWKKLFLAAGFSHYKI 118 (132)
Q Consensus 94 ~~g~~rt~~e~~~ll~~aGf~~~~~ 118 (132)
.||.++...++++++++.|++..-.
T Consensus 5 VGG~~~~~~~~~~~~~~~G~~~~~h 29 (97)
T PF10087_consen 5 VGGREDRERRYKRILEKYGGKLIHH 29 (97)
T ss_pred EcCCcccHHHHHHHHHHcCCEEEEE
Confidence 5888999999999999999997766
No 221
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=34.36 E-value=43 Score=21.57 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=15.4
Q ss_pred HHHHHHHHHhCCCeeeEE
Q 043665 101 VYDWKKLFLAAGFSHYKI 118 (132)
Q Consensus 101 ~~e~~~ll~~aGf~~~~~ 118 (132)
.+-|+..|+++||++.-+
T Consensus 81 ~~SW~~~l~~~g~~v~~~ 98 (103)
T cd03413 81 PDSWKSILEAAGIKVETV 98 (103)
T ss_pred chhHHHHHHHCCCeeEEE
Confidence 568999999999998754
No 222
>PRK04280 arginine repressor; Provisional
Probab=34.12 E-value=39 Score=23.46 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=19.1
Q ss_pred CCccCCHHHHHHHHHhCCCeeeE
Q 043665 95 NGKEGSVYDWKKLFLAAGFSHYK 117 (132)
Q Consensus 95 ~g~~rt~~e~~~ll~~aGf~~~~ 117 (132)
+-...|.+|+.+.|++.||.+.+
T Consensus 15 ~~~I~tQeeL~~~L~~~Gi~vTQ 37 (148)
T PRK04280 15 NNEIETQDELVDRLREEGFNVTQ 37 (148)
T ss_pred hCCCCCHHHHHHHHHHcCCCeeh
Confidence 45568899999999999998755
No 223
>PRK03094 hypothetical protein; Provisional
Probab=33.57 E-value=82 Score=19.67 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=20.9
Q ss_pred CccCCHHHHHHHHHhCCCeeeEEEe
Q 043665 96 GKEGSVYDWKKLFLAAGFSHYKITP 120 (132)
Q Consensus 96 g~~rt~~e~~~ll~~aGf~~~~~~~ 120 (132)
|-+.++...++-|++.||+++.+..
T Consensus 5 aVE~~Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 5 GVEQSLTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred EeecCcHHHHHHHHHCCCEEEecCc
Confidence 3466788999999999999998854
No 224
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=32.53 E-value=54 Score=21.36 Aligned_cols=28 Identities=21% Similarity=0.115 Sum_probs=23.1
Q ss_pred hhcCCCccCCHHHHHHHHHhCCCeeeEE
Q 043665 91 ATFLNGKEGSVYDWKKLFLAAGFSHYKI 118 (132)
Q Consensus 91 ~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 118 (132)
+....|...|.+++.++++.+|..+...
T Consensus 10 iL~d~~~~~Tae~I~~ilkAaGveve~~ 37 (103)
T cd05831 10 ILHDDGIEITADNINALLKAAGVNVEPY 37 (103)
T ss_pred HHccCCCCCCHHHHHHHHHHcCCcccHH
Confidence 3446899999999999999999776544
No 225
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=32.48 E-value=44 Score=22.06 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=21.8
Q ss_pred hhhcCCCc-cCCHHHHHHHHHhCCCeeeE
Q 043665 90 MATFLNGK-EGSVYDWKKLFLAAGFSHYK 117 (132)
Q Consensus 90 m~~~~~g~-~rt~~e~~~ll~~aGf~~~~ 117 (132)
+|+..+|+ ..|.+++..+|+.+|-++..
T Consensus 8 lL~~l~g~~~pTa~dI~~IL~AaGveVe~ 36 (109)
T cd05833 8 LLAVLGGNASPSAADVKKILGSVGVEVDD 36 (109)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHcCCCccH
Confidence 44445666 89999999999999966543
No 226
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=32.35 E-value=44 Score=20.71 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=16.3
Q ss_pred CCccCCHHHHHHHHHhCCCeeeE
Q 043665 95 NGKEGSVYDWKKLFLAAGFSHYK 117 (132)
Q Consensus 95 ~g~~rt~~e~~~ll~~aGf~~~~ 117 (132)
-|...|.+++...|+..|++.+.
T Consensus 3 ~G~~ls~~~l~~eL~~LgYR~v~ 25 (85)
T PF14814_consen 3 PGAPLSPAQLEQELELLGYRKVS 25 (85)
T ss_dssp TT-S--HHHHHHHHHHTT-EE-S
T ss_pred CCcccCHHHHHHHHHHcCCCcCC
Confidence 57889999999999999999875
No 227
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=31.63 E-value=42 Score=20.31 Aligned_cols=23 Identities=13% Similarity=0.097 Sum_probs=13.9
Q ss_pred CCccCCHHHHHHHHHhCCCeeeE
Q 043665 95 NGKEGSVYDWKKLFLAAGFSHYK 117 (132)
Q Consensus 95 ~g~~rt~~e~~~ll~~aGf~~~~ 117 (132)
+....|.+|+.+.|++.||.+.+
T Consensus 16 ~~~i~sQ~eL~~~L~~~Gi~vTQ 38 (70)
T PF01316_consen 16 EHEISSQEELVELLEEEGIEVTQ 38 (70)
T ss_dssp HS---SHHHHHHHHHHTT-T--H
T ss_pred HCCcCCHHHHHHHHHHcCCCcch
Confidence 44567889999999999987653
No 228
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=30.94 E-value=93 Score=17.49 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHhCCCeeeEEE
Q 043665 99 GSVYDWKKLFLAAGFSHYKIT 119 (132)
Q Consensus 99 rt~~e~~~ll~~aGf~~~~~~ 119 (132)
.+.++..+.|+++||......
T Consensus 9 ~~~~~a~~~l~~~g~~~~~~~ 29 (63)
T PF03793_consen 9 MTYDEAKSILEAAGLTVNVVE 29 (63)
T ss_dssp SBHHHHHHHHHHTT-EEEEEE
T ss_pred CcHHHHHHHHHHCCCEEEEEE
Confidence 678999999999999755443
No 229
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=30.81 E-value=1.1e+02 Score=17.47 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=20.5
Q ss_pred CHHHHHHHHHhCCCeeeEEEecCCc
Q 043665 100 SVYDWKKLFLAAGFSHYKITPNLGL 124 (132)
Q Consensus 100 t~~e~~~ll~~aGf~~~~~~~~~~~ 124 (132)
+..++..++++.|+++..+...++.
T Consensus 38 ~~~~i~~~~~~~g~~~~~~~~~~~~ 62 (69)
T cd00291 38 AVEDIPAWAKETGHEVLEVEEEGGV 62 (69)
T ss_pred HHHHHHHHHHHcCCEEEEEEEeCCE
Confidence 6789999999999998877766553
No 230
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=30.66 E-value=1.5e+02 Score=22.33 Aligned_cols=62 Identities=8% Similarity=0.004 Sum_probs=35.5
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC---CCCeEEEe--ccc-cCCCc-eEEEehhhhcCCChHHHHHHH
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG---TNNLEFFL--EFE-AIPPA-NVVLLKWILHDWSDEESLRYL 65 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~---~~ri~~~~--~~~-~~P~~-D~~ll~~vlh~~~de~~~~iL 65 (132)
+..++++.+ +++.+|. |..++.+++ .++++++. +.+ +.+.. +..+++|.-++.+.+-..++|
T Consensus 57 t~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~NlPY~iss~ii~~~l 126 (272)
T PRK00274 57 TEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANLPYNITTPLLFHLL 126 (272)
T ss_pred HHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeCCccchHHHHHHHH
Confidence 456777766 7888887 777777765 36888887 444 33322 233445555444433333333
No 231
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=30.42 E-value=90 Score=22.69 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=31.8
Q ss_pred CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCC
Q 043665 43 PANVVLLKWILHDWSDEESLRYLKKKCEESIPSND 77 (132)
Q Consensus 43 ~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g 77 (132)
.+|.++..-=+-+++-...++||+ ++..-+++||
T Consensus 117 ~~D~viS~lPll~~P~~~~iaile-~~~~rl~~gg 150 (194)
T COG3963 117 FFDSVISGLPLLNFPMHRRIAILE-SLLYRLPAGG 150 (194)
T ss_pred eeeeEEeccccccCcHHHHHHHHH-HHHHhcCCCC
Confidence 399999998888999999999999 9999999998
No 232
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=30.15 E-value=86 Score=18.84 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=18.4
Q ss_pred cCCHHHHHHHHHhCCCeeeEEE
Q 043665 98 EGSVYDWKKLFLAAGFSHYKIT 119 (132)
Q Consensus 98 ~rt~~e~~~ll~~aGf~~~~~~ 119 (132)
.-+..|+.+.|++-||..++..
T Consensus 6 ~~~~ke~ik~Le~~Gf~~vrqk 27 (66)
T COG1724 6 RMKAKEVIKALEKDGFQLVRQK 27 (66)
T ss_pred cCCHHHHHHHHHhCCcEEEEee
Confidence 3567899999999999988753
No 233
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=30.14 E-value=1.2e+02 Score=17.72 Aligned_cols=29 Identities=10% Similarity=0.028 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHhCCCeeeEEEecCCcceE
Q 043665 99 GSVYDWKKLFLAAGFSHYKITPNLGLWSL 127 (132)
Q Consensus 99 rt~~e~~~ll~~aGf~~~~~~~~~~~~~~ 127 (132)
-+.+++..|.++.|+++..+...++.+.+
T Consensus 37 ~s~~di~~~~~~~g~~~~~~~~~~~~~~~ 65 (69)
T cd03423 37 STTRDIPKFCTFLGHELLAQETEDEPYRY 65 (69)
T ss_pred chHHHHHHHHHHcCCEEEEEEEcCCEEEE
Confidence 35778899999999999887775554444
No 234
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=30.05 E-value=1.6e+02 Score=24.54 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=42.5
Q ss_pred HHHHHHHCCCCeEEEeec--hhHHhhhcC-----CCCeEEEe----cc-ccCCC--ceEEEehhhhcCCChHH-------
Q 043665 2 ARAIATAFPDIKCIVLIC--LLWWIIWWG-----TNNLEFFL----EF-EAIPP--ANVVLLKWILHDWSDEE------- 60 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl--p~v~~~a~~-----~~ri~~~~----~~-~~~P~--~D~~ll~~vlh~~~de~------- 60 (132)
+.++++++|+..++.+|. +.+....+. -.++.++. ++ +.+|. -|.+++ +.=.-|+...
T Consensus 362 ~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i-~FPDPWpKkrh~krRl~ 440 (506)
T PRK01544 362 FINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYI-LFPDPWIKNKQKKKRIF 440 (506)
T ss_pred HHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEE-ECCCCCCCCCCcccccc
Confidence 467899999999999997 434433332 33555554 11 23442 343333 1111232221
Q ss_pred HHHHHHHHhhhhCCCCC
Q 043665 61 SLRYLKKKCEESIPSND 77 (132)
Q Consensus 61 ~~~iL~~~~~~al~~~g 77 (132)
....|+ .++..|+|||
T Consensus 441 ~~~fl~-~~~~~Lk~gG 456 (506)
T PRK01544 441 NKERLK-ILQDKLKDNG 456 (506)
T ss_pred CHHHHH-HHHHhcCCCC
Confidence 346777 8888999998
No 235
>COG1438 ArgR Arginine repressor [Transcription]
Probab=29.50 E-value=56 Score=22.91 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=18.0
Q ss_pred CCccCCHHHHHHHHHhCCCeeeE
Q 043665 95 NGKEGSVYDWKKLFLAAGFSHYK 117 (132)
Q Consensus 95 ~g~~rt~~e~~~ll~~aGf~~~~ 117 (132)
.-+..|.+|+.+.|++.||.+++
T Consensus 17 ~~~i~TQ~Elv~~L~~~Gi~vTQ 39 (150)
T COG1438 17 EEKISTQEELVELLQEEGIEVTQ 39 (150)
T ss_pred hCCCCCHHHHHHHHHHcCCeEeh
Confidence 45567888888888888888654
No 236
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=29.24 E-value=2.2e+02 Score=21.34 Aligned_cols=61 Identities=7% Similarity=-0.092 Sum_probs=38.6
Q ss_pred CCeEEEeec-hhHHhhhcCCCCeEEEe-ccccCCCceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCC
Q 043665 11 DIKCIVLIC-LLWWIIWWGTNNLEFFL-EFEAIPPANVVLLKWILHDWSDEESLRYLKKKCEESIPSND 77 (132)
Q Consensus 11 ~l~~~v~Dl-p~v~~~a~~~~ri~~~~-~~~~~P~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g 77 (132)
+.+++++|. +..++.+...+.+.... -.+....+|+++++ .+.....++++ .+...++++.
T Consensus 23 g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVila-----vp~~~~~~~~~-~l~~~l~~~~ 85 (279)
T PRK07417 23 GHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILA-----LPIGLLLPPSE-QLIPALPPEA 85 (279)
T ss_pred CCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEc-----CCHHHHHHHHH-HHHHhCCCCc
Confidence 457888997 55666555433332221 12234458998885 45667778888 8888887765
No 237
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=29.23 E-value=6.2 Score=31.85 Aligned_cols=37 Identities=11% Similarity=0.257 Sum_probs=26.0
Q ss_pred cCCCceEEEehhhhcCC----ChHHHHHHHHHHhhhhCCCCC
Q 043665 40 AIPPANVVLLKWILHDW----SDEESLRYLKKKCEESIPSND 77 (132)
Q Consensus 40 ~~P~~D~~ll~~vlh~~----~de~~~~iL~~~~~~al~~~g 77 (132)
++|.+|.|-+.-++|.. +.....-.++ +.-..+.|||
T Consensus 179 ~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie-~lw~l~~~gg 219 (484)
T COG5459 179 SLPAADLYTLAIVLDELLPDGNEKPIQVNIE-RLWNLLAPGG 219 (484)
T ss_pred CCCccceeehhhhhhhhccccCcchHHHHHH-HHHHhccCCC
Confidence 67778877776666554 3333444888 8888999988
No 238
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=28.85 E-value=55 Score=21.75 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=21.6
Q ss_pred hhhcCCCc-cCCHHHHHHHHHhCCCeeeE
Q 043665 90 MATFLNGK-EGSVYDWKKLFLAAGFSHYK 117 (132)
Q Consensus 90 m~~~~~g~-~rt~~e~~~ll~~aGf~~~~ 117 (132)
+|+..+|. ..|.+++.++|+.+|-.+..
T Consensus 8 ll~~l~g~~~pta~dI~~IL~AaGvevd~ 36 (113)
T PLN00138 8 LLAVLGGNTCPSAEDLKDILGSVGADADD 36 (113)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHcCCcccH
Confidence 44555666 69999999999999976543
No 239
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=28.74 E-value=2.5e+02 Score=20.89 Aligned_cols=115 Identities=11% Similarity=0.126 Sum_probs=61.8
Q ss_pred HHHHHHHCCCCeEEEeec--hhHHhhhcC----C-CCeEEEe-----ccccC-C--CceEEEehhhhcCCChHH------
Q 043665 2 ARAIATAFPDIKCIVLIC--LLWWIIWWG----T-NNLEFFL-----EFEAI-P--PANVVLLKWILHDWSDEE------ 60 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl--p~v~~~a~~----~-~ri~~~~-----~~~~~-P--~~D~~ll~~vlh~~~de~------ 60 (132)
+.++|+++|+..++.++. |.+...... . .++.++. +++.+ | +-|-+.+ +.=.-|+...
T Consensus 63 l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i-~FPDPWpKkRH~KRRl 141 (227)
T COG0220 63 LVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI-NFPDPWPKKRHHKRRL 141 (227)
T ss_pred HHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE-ECCCCCCCcccccccc
Confidence 568899999999999997 444443332 2 2666664 33322 2 1232222 1111122221
Q ss_pred -HHHHHHHHhhhhCCCCCC------CCcch---------hhhhhhhhhc------CCCccCCHHHHHHHHHhCCCeeeEE
Q 043665 61 -SLRYLKKKCEESIPSNDE------GRKTQ---------LCFDLLMATF------LNGKEGSVYDWKKLFLAAGFSHYKI 118 (132)
Q Consensus 61 -~~~iL~~~~~~al~~~g~------~~~~~---------~~~dl~m~~~------~~g~~rt~~e~~~ll~~aGf~~~~~ 118 (132)
....|+ .+++.|+|||. ..... ....+..... .....+...+|++-....|-.+...
T Consensus 142 ~~~~fl~-~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~yE~k~~~~g~~i~~l 220 (227)
T COG0220 142 TQPEFLK-LYARKLKPGGVLHFATDNEEYFEWMMLEVLEHPPFLKFESEDLHYNLPPPDNNPVTEYEQKFRRLGHPVYDL 220 (227)
T ss_pred CCHHHHH-HHHHHccCCCEEEEEecCHHHHHHHHHHHHhcchhhhccccccccccccccCCCCcHHHHHHHhCCCceEEE
Confidence 246788 89999999991 11100 0011111111 1223366688999999999776654
No 240
>PF05772 NinB: NinB protein; InterPro: IPR008711 The ninR region of Bacteriophage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of Escherichia coli, respectively, operate on phage lambda []. Genetic recombination in phage lambda relies on DNA end processing by Exo to expose 3'-tailed strands for annealing and exchange by beta protein. Phage lambda encodes an additional recombinase, NinB (Orf), which participates in the early stages of recombination by supplying a function equivalent to the E. coli RecFOR complex. These host enzymes assist loading of the RecA strand exchange protein onto ssDNA coated with ssDNA-binding protein. NinB has two structural domains with unusual folds, and exists as an intertwined dimer [].; PDB: 1PC6_B.
Probab=28.35 E-value=48 Score=22.50 Aligned_cols=26 Identities=38% Similarity=0.480 Sum_probs=15.7
Q ss_pred hhhhhhhcCCCccCCHHHHHHHHHhC
Q 043665 86 FDLLMATFLNGKEGSVYDWKKLFLAA 111 (132)
Q Consensus 86 ~dl~m~~~~~g~~rt~~e~~~ll~~a 111 (132)
-|+.=-+..+|+.++.++|+.+|..+
T Consensus 48 ~dIs~qv~~~G~k~~~e~WK~~~~~~ 73 (127)
T PF05772_consen 48 GDISRQVEWNGRKLDPEDWKELFTAA 73 (127)
T ss_dssp HHHHHH--BTTB---HHHHHHHHHHH
T ss_pred HHHHHHhHhcCccCCHHHHHHHHHHH
Confidence 33433344689999999999999875
No 241
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=28.00 E-value=62 Score=17.62 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=14.1
Q ss_pred CCHHHHHHHHHhCCCeee
Q 043665 99 GSVYDWKKLFLAAGFSHY 116 (132)
Q Consensus 99 rt~~e~~~ll~~aGf~~~ 116 (132)
.+.+++.++.++.||...
T Consensus 27 ~~~~e~~~lA~~~Gy~ft 44 (49)
T PF07862_consen 27 QNPEEVVALAREAGYDFT 44 (49)
T ss_pred CCHHHHHHHHHHcCCCCC
Confidence 478888888888888753
No 242
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=27.79 E-value=1.2e+02 Score=23.61 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=23.4
Q ss_pred HHHHHHHHhCCCe----eeEEEecCCcceEEEEEC
Q 043665 102 YDWKKLFLAAGFS----HYKITPNLGLWSLIEAYP 132 (132)
Q Consensus 102 ~e~~~ll~~aGf~----~~~~~~~~~~~~~ie~~p 132 (132)
.-+..++++.|.. ..++.|++...++||++|
T Consensus 54 ~~~~~i~~~~~l~l~l~~Y~vip~~~~~GlIE~V~ 88 (293)
T cd05168 54 QQFDRIFKEEGLPLWLRPYEILVTSSNSGLIETIP 88 (293)
T ss_pred HHHHHHHHHCCCCceeeeEEEEEccCCceeEEEeC
Confidence 3456677777743 467889988999999986
No 243
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=27.62 E-value=1.1e+02 Score=24.28 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=23.2
Q ss_pred HHHHHHHhCCC----eeeEEEecCCcceEEEEEC
Q 043665 103 DWKKLFLAAGF----SHYKITPNLGLWSLIEAYP 132 (132)
Q Consensus 103 e~~~ll~~aGf----~~~~~~~~~~~~~~ie~~p 132 (132)
-+..++++.|+ ...++.|++...++||++|
T Consensus 113 l~~~i~~~~~ldl~l~~Y~Vip~~~~~GlIE~V~ 146 (352)
T cd00891 113 LMDKIWKKEGLDLRMTPYGCIATGDGVGMIEVVP 146 (352)
T ss_pred HHHHHHHHCCCCeeeEEEEEEEccCCceEEEEeC
Confidence 45567788884 3467889988999999986
No 244
>PF10258 RNA_GG_bind: PHAX RNA-binding domain; InterPro: IPR019385 The phosphorylated adaptor for RNA export (PHAX) protein transports U3 snoRNA from the nucleus after transcription []. This entry represents the highly conserved U3 snoRNA-binding domain of PHAX, which is characterised by having two pairs of adjacent glycines with the sequence motif GGx12GG.; PDB: 2XC7_A 2W4S_B.
Probab=27.56 E-value=14 Score=23.36 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=39.8
Q ss_pred EEEehhhhcCCChHHHHHHHHHHhhhhCCCCC----CCCcchhhhhhhhhhcCCCccCCHHHHHHHHHh
Q 043665 46 VVLLKWILHDWSDEESLRYLKKKCEESIPSND----EGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLA 110 (132)
Q Consensus 46 ~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g----~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~ 110 (132)
.+++.++++-..-+.|..++. .....-..|| ++....+.-.++....-+....|.++|..++..
T Consensus 15 ~~li~rvV~~lG~~~~~~l~~-et~~Ie~~GG~~~~dG~RrRTpGGVF~~LlK~~~~i~~e~~k~If~~ 82 (87)
T PF10258_consen 15 KDLIERVVKRLGVEKALELLN-ETMKIEKNGGMMTADGSRRRTPGGVFFNLLKNDDDISPEDKKEIFKE 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHCT-EE-TTSSCE-SHHHHHHHHHHHTTSS-HHHHHHHHTS
T ss_pred HHHHHHHHHHHCHHHHHHHHH-HHHHHHHcCCeEeecCccCcCCCcchhHhhccCccCCHHHHHHHHHH
Confidence 356778888888999999999 8887766777 333333333333222223445778888888764
No 245
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=27.54 E-value=1.5e+02 Score=23.95 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=24.4
Q ss_pred HHHHHHHHhCCCe----eeEEEecCCcceEEEEEC
Q 043665 102 YDWKKLFLAAGFS----HYKITPNLGLWSLIEAYP 132 (132)
Q Consensus 102 ~e~~~ll~~aGf~----~~~~~~~~~~~~~ie~~p 132 (132)
.-+..+++++|+. ..++.+++...++||++|
T Consensus 120 ~lmd~i~~~~~ldL~l~pY~vl~tg~~~GlIE~V~ 154 (366)
T cd05175 120 RIMENIWQNQGLDLRMLPYGCLSIGDCVGLIEVVR 154 (366)
T ss_pred HHHHHHHHHCCCCeEEEEEEEEEecCCceEEEEcC
Confidence 3466788888864 457888888999999987
No 246
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=27.54 E-value=1.4e+02 Score=17.53 Aligned_cols=27 Identities=11% Similarity=-0.048 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHhCCCeeeEEEecCCcc
Q 043665 99 GSVYDWKKLFLAAGFSHYKITPNLGLW 125 (132)
Q Consensus 99 rt~~e~~~ll~~aGf~~~~~~~~~~~~ 125 (132)
-+...+..|.++.|+++......++.+
T Consensus 37 ~s~~ni~~~~~~~g~~v~~~~~~~~~~ 63 (69)
T cd03422 37 QSINNIPIDARNHGYKVLAIEQSGPTI 63 (69)
T ss_pred hHHHHHHHHHHHcCCEEEEEEecCCEE
Confidence 346788999999999998776655443
No 247
>PF08676 MutL_C: MutL C terminal dimerisation domain; InterPro: IPR014790 MutL and MutS are key components of the DNA repair machinery that corrects replication errors []. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signalling complex for repair. The N-terminal region of MutL contains the ATPase domain and the C-terminal is involved in dimerisation []. ; GO: 0005524 ATP binding, 0006298 mismatch repair; PDB: 3NCV_B 1X9Z_B 3GAB_C 3KDK_A 3KDG_A.
Probab=27.21 E-value=1.2e+02 Score=20.15 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=14.0
Q ss_pred HHHHHHHHHhCCCeeeE
Q 043665 101 VYDWKKLFLAAGFSHYK 117 (132)
Q Consensus 101 ~~e~~~ll~~aGf~~~~ 117 (132)
..++.+.|++.||....
T Consensus 68 l~~~~~~L~~~Gf~~~~ 84 (144)
T PF08676_consen 68 LEENKEELEKLGFEIEE 84 (144)
T ss_dssp HHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHhCCeEEEE
Confidence 57899999999999876
No 248
>PF01870 Hjc: Archaeal holliday junction resolvase (hjc); InterPro: IPR002732 This entry represents Holliday junction resolvases (hjc gene) and related proteins, primarily from archaeal species []. The Holliday junction is an essential intermediate of homologous recombination. Holliday junctions are four-stranded DNA complexes that are formed during recombination and related DNA repair events. In the presence of divalent cations, these junctions exist predominantly as the stacked-X form in which the double-helical segments are coaxially stacked and twisted by 60 degrees in a right-handed direction across the junction cross-over. In this structure, the stacked arms resemble two adjacent double-helices, but are linked at the junction by two common strands that cross-over between the duplexes []. During homologous recombination, genetic information is physically exchanged between parental DNAs via crossing single strands of the same polarity within the four-way Holliday structure. This process is terminated by the endonucleolytic activity of resolvases, which convert the four-way DNA back to two double strands.; PDB: 2WJ0_A 2WIZ_B 2WIW_B 2WCW_C 2WCZ_A 1HH1_A 1GEF_D 1IPI_B 2EO0_B 1OB9_A ....
Probab=27.17 E-value=73 Score=20.11 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=16.2
Q ss_pred CHHHHHHHHHhCCCeeeEEEe
Q 043665 100 SVYDWKKLFLAAGFSHYKITP 120 (132)
Q Consensus 100 t~~e~~~ll~~aGf~~~~~~~ 120 (132)
.+.|+.++|.+.||.+.+.--
T Consensus 2 ~Erel~~~L~~~Gf~v~R~~~ 22 (88)
T PF01870_consen 2 FERELVKILWERGFAVVRAAG 22 (88)
T ss_dssp HHHHHHHHHHHTT-EEEEBSC
T ss_pred HHHHHHHHHHhCCcEEEEecC
Confidence 367899999999999987643
No 249
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=27.03 E-value=1.2e+02 Score=23.17 Aligned_cols=36 Identities=6% Similarity=0.070 Sum_probs=21.9
Q ss_pred eEEEeec-hhHHhhhcCCCCeEEEeccccCC-CceEEEeh
Q 043665 13 KCIVLIC-LLWWIIWWGTNNLEFFLEFEAIP-PANVVLLK 50 (132)
Q Consensus 13 ~~~v~Dl-p~v~~~a~~~~ri~~~~~~~~~P-~~D~~ll~ 50 (132)
+++++|. |++.+.. .++|.|..+..+.+ .+|+++=-
T Consensus 66 eV~lvDI~p~lk~ll--~~~i~F~~~~~~~~~~~DlIID~ 103 (252)
T PF06690_consen 66 EVTLVDIHPHLKELL--NENIKFMEFRNGLEGNPDLIIDT 103 (252)
T ss_pred eEEEEeCcHHHHHHh--cCCCceeeccCCCCCCCCEEEEC
Confidence 8999998 6666655 55667766333333 25555433
No 250
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=26.86 E-value=2.4e+02 Score=21.77 Aligned_cols=61 Identities=13% Similarity=0.045 Sum_probs=38.6
Q ss_pred HHHHHHCCCCeEEEeec-hhHHhhhcC-------CCCeEEEe--ccc-cCCCceEEEehhhhcCCChHHHHHHHH
Q 043665 3 RAIATAFPDIKCIVLIC-LLWWIIWWG-------TNNLEFFL--EFE-AIPPANVVLLKWILHDWSDEESLRYLK 66 (132)
Q Consensus 3 ~~l~~~~P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~--~~~-~~P~~D~~ll~~vlh~~~de~~~~iL~ 66 (132)
..++++. .+++.+|+ +..++.+++ .++++++. +.+ +.+.+|+++ +|.-++++.....++|.
T Consensus 52 ~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~~d~Vv-aNlPY~Istpil~~ll~ 123 (294)
T PTZ00338 52 EKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPYFDVCV-ANVPYQISSPLVFKLLA 123 (294)
T ss_pred HHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccccCEEE-ecCCcccCcHHHHHHHh
Confidence 3455543 46888888 566666553 36788888 655 555677554 56666776666555553
No 251
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.69 E-value=2e+02 Score=20.88 Aligned_cols=62 Identities=13% Similarity=0.137 Sum_probs=42.9
Q ss_pred CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCCCCCcchhhhhhhhhhcCCCccCCHHHHHHHHHhCCCeeeEE
Q 043665 43 PANVVLLKWILHDWSDEESLRYLKKKCEESIPSNDEGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAAGFSHYKI 118 (132)
Q Consensus 43 ~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 118 (132)
.+|.|+.+.++ |=||....+.+ -+...|+|.|.. +.+.--+-+|.+.|.+....+||.+...
T Consensus 103 tFDiIlaADCl--FfdE~h~sLvd-tIk~lL~p~g~A-----------l~fsPRRg~sL~kF~de~~~~gf~v~l~ 164 (201)
T KOG3201|consen 103 TFDIILAADCL--FFDEHHESLVD-TIKSLLRPSGRA-----------LLFSPRRGQSLQKFLDEVGTVGFTVCLE 164 (201)
T ss_pred cccEEEeccch--hHHHHHHHHHH-HHHHHhCcccce-----------eEecCcccchHHHHHHHHHhceeEEEec
Confidence 49999998887 45666677777 888899997630 0011123367788888888888876543
No 252
>PF13319 DUF4090: Protein of unknown function (DUF4090)
Probab=26.64 E-value=69 Score=19.93 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=21.1
Q ss_pred CCCccCCHHHHHHHHHhCCCeeeE
Q 043665 94 LNGKEGSVYDWKKLFLAAGFSHYK 117 (132)
Q Consensus 94 ~~g~~rt~~e~~~ll~~aGf~~~~ 117 (132)
.|.+..+.+++-+.|.+|||.--+
T Consensus 54 ~GaKH~~q~~Lnq~L~~Ag~~~LK 77 (84)
T PF13319_consen 54 IGAKHFDQEELNQRLIDAGWEGLK 77 (84)
T ss_pred hccccCCHHHHHHHHHHcCccccc
Confidence 688999999999999999997543
No 253
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.49 E-value=54 Score=26.75 Aligned_cols=36 Identities=19% Similarity=0.100 Sum_probs=26.1
Q ss_pred hhhhhhcCCCccCCH---HHHHHHHHhCCCeeeEEEecC
Q 043665 87 DLLMATFLNGKEGSV---YDWKKLFLAAGFSHYKITPNL 122 (132)
Q Consensus 87 dl~m~~~~~g~~rt~---~e~~~ll~~aGf~~~~~~~~~ 122 (132)
+..+++.++|..|-- ..++.+|+.|||..+.+..+.
T Consensus 73 ~~vlmt~TgGpCRfgnYi~~~rkaLk~aG~~~V~visLn 111 (420)
T COG3581 73 DAVLMTQTGGPCRFGNYIELLRKALKDAGFRDVPVISLN 111 (420)
T ss_pred cEEEEecCCCCcchhhHHHHHHHHHHHcCCCCCcEEEee
Confidence 334555567776643 578889999999999887654
No 254
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=26.48 E-value=1.4e+02 Score=21.70 Aligned_cols=67 Identities=13% Similarity=0.034 Sum_probs=38.0
Q ss_pred HHHHHHCCCCeEEEeec-hhHHhhhcC-------CCCeEEEe--ccccC-C-CceEEEehhhhcCCChHHHHHHHHHHhh
Q 043665 3 RAIATAFPDIKCIVLIC-LLWWIIWWG-------TNNLEFFL--EFEAI-P-PANVVLLKWILHDWSDEESLRYLKKKCE 70 (132)
Q Consensus 3 ~~l~~~~P~l~~~v~Dl-p~v~~~a~~-------~~ri~~~~--~~~~~-P-~~D~~ll~~vlh~~~de~~~~iL~~~~~ 70 (132)
..+++..+..+++..|+ |..++...+ .++|.... ..+-. . .+|-++|. ++.. +...|. .+.
T Consensus 117 l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~-----lp~~-~~~fl~-~~~ 189 (200)
T PF02475_consen 117 LPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMN-----LPES-SLEFLD-AAL 189 (200)
T ss_dssp HHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE-------TSS-GGGGHH-HHH
T ss_pred HHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEEC-----ChHH-HHHHHH-HHH
Confidence 44566567778999999 777776654 67787666 44433 2 38966664 3322 344555 555
Q ss_pred hhCCCC
Q 043665 71 ESIPSN 76 (132)
Q Consensus 71 ~al~~~ 76 (132)
..++++
T Consensus 190 ~~~~~~ 195 (200)
T PF02475_consen 190 SLLKEG 195 (200)
T ss_dssp HHEEEE
T ss_pred HHhcCC
Confidence 444443
No 255
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=26.45 E-value=1.5e+02 Score=22.89 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=23.5
Q ss_pred HHHHHHHhCCCe----eeEEEecCCcceEEEEEC
Q 043665 103 DWKKLFLAAGFS----HYKITPNLGLWSLIEAYP 132 (132)
Q Consensus 103 e~~~ll~~aGf~----~~~~~~~~~~~~~ie~~p 132 (132)
-+..++++.|.. ..++.|++...++||++|
T Consensus 55 l~~~i~~~~~l~l~l~~Y~vi~~s~~~GlIE~V~ 88 (289)
T cd00893 55 ELQKIFELMFLDLWLNPYLVLPVSKTGGIIEFIP 88 (289)
T ss_pred HHHHHHHHcCCCceeEEEEEEECCCCceeEEEeC
Confidence 456777888743 467889988999999987
No 256
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=26.24 E-value=1.4e+02 Score=23.91 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=24.4
Q ss_pred HHHHHHHHhCCCe----eeEEEecCCcceEEEEEC
Q 043665 102 YDWKKLFLAAGFS----HYKITPNLGLWSLIEAYP 132 (132)
Q Consensus 102 ~e~~~ll~~aGf~----~~~~~~~~~~~~~ie~~p 132 (132)
..+..++++.|+. ..++.+++...++||++|
T Consensus 113 ~lmd~i~~~~~ldl~l~pY~vl~tg~~~G~IE~V~ 147 (354)
T cd00895 113 RIMNKIWVQEGLDMRMVIFRCFSTGRGRGMVEMIP 147 (354)
T ss_pred HHHHHHHHHcCCCceEEEEEEEecCCCceEEEEeC
Confidence 4567788888843 367788888999999987
No 257
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=25.93 E-value=82 Score=21.98 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCCeeeEEEe
Q 043665 101 VYDWKKLFLAAGFSHYKITP 120 (132)
Q Consensus 101 ~~e~~~ll~~aGf~~~~~~~ 120 (132)
=.+|.+-++.+||++..+.+
T Consensus 39 C~~w~~~mk~~Gf~Vk~~~~ 58 (149)
T COG3019 39 CDEWAQHMKANGFEVKVVET 58 (149)
T ss_pred HHHHHHHHHhCCcEEEEeec
Confidence 36999999999999987643
No 258
>PF13137 DUF3983: Protein of unknown function (DUF3983)
Probab=25.78 E-value=36 Score=17.61 Aligned_cols=17 Identities=29% Similarity=0.634 Sum_probs=13.2
Q ss_pred ccCCHHHHHHHHHhCCC
Q 043665 97 KEGSVYDWKKLFLAAGF 113 (132)
Q Consensus 97 ~~rt~~e~~~ll~~aGf 113 (132)
++|...-|+++|-++|.
T Consensus 18 K~rv~kAWRNiFvqagI 34 (34)
T PF13137_consen 18 KYRVDKAWRNIFVQAGI 34 (34)
T ss_pred HHHHHHHHHHHHHHccC
Confidence 35667889999999883
No 259
>PRK05066 arginine repressor; Provisional
Probab=25.73 E-value=54 Score=22.97 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=19.1
Q ss_pred CCCccCCHHHHHHHHHhCCCe-eeE
Q 043665 94 LNGKEGSVYDWKKLFLAAGFS-HYK 117 (132)
Q Consensus 94 ~~g~~rt~~e~~~ll~~aGf~-~~~ 117 (132)
.+....|.+|+.+.|++.||. +.+
T Consensus 19 ~~~~I~tQeeL~~~L~~~Gi~~vTQ 43 (156)
T PRK05066 19 KEEKFGSQGEIVTALQEQGFDNINQ 43 (156)
T ss_pred hhCCCCCHHHHHHHHHHCCCCeecH
Confidence 466678899999999999998 543
No 260
>PRK11018 hypothetical protein; Provisional
Probab=25.48 E-value=1.6e+02 Score=17.74 Aligned_cols=28 Identities=11% Similarity=-0.005 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHhCCCeeeEEEecCCcce
Q 043665 99 GSVYDWKKLFLAAGFSHYKITPNLGLWS 126 (132)
Q Consensus 99 rt~~e~~~ll~~aGf~~~~~~~~~~~~~ 126 (132)
-+...+..+.++.|+++..+...++.+.
T Consensus 46 ~a~~di~~~~~~~G~~v~~~~~~~g~~~ 73 (78)
T PRK11018 46 QSINNIPLDARNHGYTVLDIQQDGPTIR 73 (78)
T ss_pred cHHHHHHHHHHHcCCEEEEEEecCCeEE
Confidence 4467889999999999987766555443
No 261
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=25.47 E-value=1.2e+02 Score=24.15 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=22.8
Q ss_pred HHHHHHHhCCCe----eeEEEecCCcceEEEEEC
Q 043665 103 DWKKLFLAAGFS----HYKITPNLGLWSLIEAYP 132 (132)
Q Consensus 103 e~~~ll~~aGf~----~~~~~~~~~~~~~ie~~p 132 (132)
-+..++++.|+. ..++.|++...++||++|
T Consensus 113 lm~~i~~~~~ldL~l~~Y~vip~~~~~GlIE~V~ 146 (353)
T cd05166 113 IMDKIWLQEGLDLRMITFRCLSTGYDRGMVELVP 146 (353)
T ss_pred HHHHHHHhCCCCceeEEEEEEEcCCCcceEEEeC
Confidence 445667777754 367888988999999986
No 262
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=24.75 E-value=1.5e+02 Score=23.76 Aligned_cols=29 Identities=17% Similarity=0.368 Sum_probs=22.5
Q ss_pred HHHHHHhCCCe----eeEEEecCCcceEEEEEC
Q 043665 104 WKKLFLAAGFS----HYKITPNLGLWSLIEAYP 132 (132)
Q Consensus 104 ~~~ll~~aGf~----~~~~~~~~~~~~~ie~~p 132 (132)
+..+++++|+. ..++.+++...++||++|
T Consensus 115 md~i~~~~~ldl~l~pY~vl~t~~~~GlIE~V~ 147 (354)
T cd05177 115 MDNIWLQEGLDMQMIIYRCLSTGKTQGLVQMVP 147 (354)
T ss_pred HHHHHHHcCCCceEEEEEEEecCCCceEEEEeC
Confidence 45677888854 456788888999999987
No 263
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=24.62 E-value=1.6e+02 Score=17.23 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHhCCCeeeEEEecCCcceE
Q 043665 99 GSVYDWKKLFLAAGFSHYKITPNLGLWSL 127 (132)
Q Consensus 99 rt~~e~~~ll~~aGf~~~~~~~~~~~~~~ 127 (132)
-+..++..|.++.|+++..+...++.+.+
T Consensus 37 ~a~~di~~~~~~~G~~~~~~~~~~~~~~~ 65 (69)
T cd03420 37 GFARDAQAWCKSTGNTLISLETEKGKVKA 65 (69)
T ss_pred cHHHHHHHHHHHcCCEEEEEEecCCEEEE
Confidence 45678899999999999877765554443
No 264
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=24.59 E-value=2e+02 Score=20.61 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=43.8
Q ss_pred HHHHHHHCCCCeEEEeec-hhHHhhhcC------CCCeEEEe-----cccc-CC-C-ceEEEehhhhcCCChH----H--
Q 043665 2 ARAIATAFPDIKCIVLIC-LLWWIIWWG------TNNLEFFL-----EFEA-IP-P-ANVVLLKWILHDWSDE----E-- 60 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~-----~~~~-~P-~-~D~~ll~~vlh~~~de----~-- 60 (132)
+.++++++|+..++.+|. ...+..+.. ..++.++. ++.. ++ + .|-+.+ .+||. .
T Consensus 32 l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i-----~FPDPWpK~rH~ 106 (195)
T PF02390_consen 32 LIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYI-----NFPDPWPKKRHH 106 (195)
T ss_dssp HHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEE-----ES-----SGGGG
T ss_pred HHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEE-----eCCCCCcccchh
Confidence 568999999999999998 444444432 56777776 2221 22 2 333332 23332 1
Q ss_pred -----HHHHHHHHhhhhCCCCC
Q 043665 61 -----SLRYLKKKCEESIPSND 77 (132)
Q Consensus 61 -----~~~iL~~~~~~al~~~g 77 (132)
....|+ .++..|+|||
T Consensus 107 krRl~~~~fl~-~~~~~L~~gG 127 (195)
T PF02390_consen 107 KRRLVNPEFLE-LLARVLKPGG 127 (195)
T ss_dssp GGSTTSHHHHH-HHHHHEEEEE
T ss_pred hhhcCCchHHH-HHHHHcCCCC
Confidence 346888 8899999999
No 265
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=24.33 E-value=74 Score=21.14 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=21.4
Q ss_pred hhhcCCCc-cCCHHHHHHHHHhCCCeeeE
Q 043665 90 MATFLNGK-EGSVYDWKKLFLAAGFSHYK 117 (132)
Q Consensus 90 m~~~~~g~-~rt~~e~~~ll~~aGf~~~~ 117 (132)
+++..+|+ ..|.+++..+|+.+|-++..
T Consensus 10 lL~~lgG~~~pTaddI~kIL~AaGveVd~ 38 (112)
T PTZ00373 10 LMCVLGGNENPTKKEVKNVLSAVNADVED 38 (112)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHcCCCccH
Confidence 34445666 59999999999999976544
No 266
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=24.28 E-value=1.5e+02 Score=23.86 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=23.1
Q ss_pred HHHHHHHhCCCe----eeEEEecCCcceEEEEEC
Q 043665 103 DWKKLFLAAGFS----HYKITPNLGLWSLIEAYP 132 (132)
Q Consensus 103 e~~~ll~~aGf~----~~~~~~~~~~~~~ie~~p 132 (132)
-+..++++.|.. ..++.+++...++||++|
T Consensus 117 lm~~i~k~~~ldL~l~pY~vi~t~~~~GlIE~V~ 150 (362)
T cd05173 117 LMDTLWKEAGLDLRIVPYGCLATGDRSGLIEVVS 150 (362)
T ss_pred HHHHHHHHCCCCeeeEEEEEEEccCCceEEEEeC
Confidence 455677888743 467788888999999987
No 267
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=23.81 E-value=40 Score=23.62 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=20.0
Q ss_pred CccCCHHHHHHHHHhCCCeeeEEE
Q 043665 96 GKEGSVYDWKKLFLAAGFSHYKIT 119 (132)
Q Consensus 96 g~~rt~~e~~~ll~~aGf~~~~~~ 119 (132)
......+++...|.+|||....|.
T Consensus 18 ~~~~d~~~L~~~L~~aGF~~~eI~ 41 (155)
T PF04361_consen 18 DACPDQDDLTRELSAAGFEDEEIN 41 (155)
T ss_pred ccCCCHHHHHHHHHHcCCCHHHHH
Confidence 556789999999999999876654
No 268
>COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism]
Probab=23.15 E-value=83 Score=25.16 Aligned_cols=21 Identities=10% Similarity=0.140 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHhCCCeeeEEE
Q 043665 99 GSVYDWKKLFLAAGFSHYKIT 119 (132)
Q Consensus 99 rt~~e~~~ll~~aGf~~~~~~ 119 (132)
-.++|++.+++++||++++-.
T Consensus 241 vnE~evE~~~q~~G~~IVrPE 261 (368)
T COG4421 241 VNEEEVERLLQRSGLTIVRPE 261 (368)
T ss_pred hCHHHHHHHHHhcCcEEEech
Confidence 468999999999999998754
No 269
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=23.15 E-value=75 Score=21.04 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=21.3
Q ss_pred cCCCccCCHHHHHHHHHhCCCeeeE
Q 043665 93 FLNGKEGSVYDWKKLFLAAGFSHYK 117 (132)
Q Consensus 93 ~~~g~~rt~~e~~~ll~~aGf~~~~ 117 (132)
+..|++.|.+.+..+|+.+|-.+..
T Consensus 11 ~~agkei~e~~l~~vl~aaGveve~ 35 (109)
T COG2058 11 HLAGKEITEDNLKSVLEAAGVEVEE 35 (109)
T ss_pred HHccCcCCHHHHHHHHHHcCCCccH
Confidence 4578899999999999999977643
No 270
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=22.68 E-value=91 Score=17.30 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=13.6
Q ss_pred HHHHH-HHHHhCCCeeeEEE
Q 043665 101 VYDWK-KLFLAAGFSHYKIT 119 (132)
Q Consensus 101 ~~e~~-~ll~~aGf~~~~~~ 119 (132)
...++ .+|++.||+++.|-
T Consensus 19 ~t~lk~r~L~~~G~~Vi~Ip 38 (58)
T PF08373_consen 19 STKLKHRHLKALGYKVISIP 38 (58)
T ss_pred HHHHHHHHHHHCCCEEEEec
Confidence 34444 48999999998773
No 271
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=22.30 E-value=1.7e+02 Score=23.39 Aligned_cols=30 Identities=20% Similarity=0.301 Sum_probs=23.0
Q ss_pred HHHHHHHhCCCe----eeEEEecCCcceEEEEEC
Q 043665 103 DWKKLFLAAGFS----HYKITPNLGLWSLIEAYP 132 (132)
Q Consensus 103 e~~~ll~~aGf~----~~~~~~~~~~~~~ie~~p 132 (132)
-+..++++.|+. ..++.+++...++||++|
T Consensus 113 lmd~i~~~~~ldL~l~pY~vl~tg~~~GlIE~V~ 146 (353)
T cd05176 113 IMDKIWLQEGLDLRMVIFKCLSTGKDRGMVELVP 146 (353)
T ss_pred HHHHHHHHCCCCeEEEEEEEEEcCCCceEEEEeC
Confidence 455677788854 356788888999999987
No 272
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=21.92 E-value=98 Score=19.95 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=13.6
Q ss_pred HHHHHHHCCCCeEEEe
Q 043665 2 ARAIATAFPDIKCIVL 17 (132)
Q Consensus 2 ~~~l~~~~P~l~~~v~ 17 (132)
+..+++.||+.+++++
T Consensus 55 i~~i~~~fP~~kfiLI 70 (100)
T PF09949_consen 55 IERILRDFPERKFILI 70 (100)
T ss_pred HHHHHHHCCCCcEEEE
Confidence 4678999999999886
No 273
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=21.76 E-value=78 Score=20.08 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=18.7
Q ss_pred hhcCCCccCCHHHHHHHHHhCCCeee
Q 043665 91 ATFLNGKEGSVYDWKKLFLAAGFSHY 116 (132)
Q Consensus 91 ~~~~~g~~rt~~e~~~ll~~aGf~~~ 116 (132)
...+|.-.+|.+++.+-|+..||.+.
T Consensus 34 ~~lTNns~~s~~~~~~~L~~~Gi~~~ 59 (101)
T PF13344_consen 34 VFLTNNSSRSREEYAKKLKKLGIPVD 59 (101)
T ss_dssp EEEES-SSS-HHHHHHHHHHTTTT--
T ss_pred EEEeCCCCCCHHHHHHHHHhcCcCCC
Confidence 33468888999999999999999853
No 274
>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....
Probab=21.73 E-value=69 Score=18.41 Aligned_cols=20 Identities=25% Similarity=0.582 Sum_probs=14.8
Q ss_pred cCCHHHHHHHHHhCCCeeeE
Q 043665 98 EGSVYDWKKLFLAAGFSHYK 117 (132)
Q Consensus 98 ~rt~~e~~~ll~~aGf~~~~ 117 (132)
.--.+||+.+|..+|.+..+
T Consensus 24 ~glp~ew~~~l~~~~it~~~ 43 (59)
T PF00786_consen 24 TGLPPEWEKLLKSSGITEEE 43 (59)
T ss_dssp ES--HHHHHHHHSCTTSHHH
T ss_pred ccCCHHHHhhccccCCCHHH
Confidence 46689999999999987543
No 275
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=21.68 E-value=61 Score=25.88 Aligned_cols=26 Identities=23% Similarity=0.553 Sum_probs=20.2
Q ss_pred CCCccC-----CHHHHHHHHHhCCCeeeEEE
Q 043665 94 LNGKEG-----SVYDWKKLFLAAGFSHYKIT 119 (132)
Q Consensus 94 ~~g~~r-----t~~e~~~ll~~aGf~~~~~~ 119 (132)
+.|.+| +.+.|+..++.|||+.+.+.
T Consensus 300 ~eg~~R~eR~e~~~~W~~r~~~aGF~~~~ls 330 (374)
T PF03514_consen 300 CEGEERVERHERLEQWRRRMRRAGFRPVPLS 330 (374)
T ss_pred cccccccccccchhHHHHHHHhcCCeecCCC
Confidence 456554 45899999999999987764
No 276
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=21.54 E-value=4.4e+02 Score=21.27 Aligned_cols=89 Identities=9% Similarity=-0.090 Sum_probs=50.5
Q ss_pred CCeEEEeec-hhHHhhhcC-------C-CCeEEEe--cccc---C---C-CceEEEehhhhcCCCh-------HHHHHHH
Q 043665 11 DIKCIVLIC-LLWWIIWWG-------T-NNLEFFL--EFEA---I---P-PANVVLLKWILHDWSD-------EESLRYL 65 (132)
Q Consensus 11 ~l~~~v~Dl-p~v~~~a~~-------~-~ri~~~~--~~~~---~---P-~~D~~ll~~vlh~~~d-------e~~~~iL 65 (132)
..+++.+|+ +..++.+++ . ++++++. .|+. + . .+|++++--=--.-+. ..-..++
T Consensus 243 a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~ 322 (396)
T PRK15128 243 CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDIN 322 (396)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHH
Confidence 447999998 667777764 2 4788886 5542 1 2 4999997411100011 1134556
Q ss_pred HHHhhhhCCCCCCCCcchhhhhhhhhhcCCCccCCHHHHHHHHHhC
Q 043665 66 KKKCEESIPSNDEGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAA 111 (132)
Q Consensus 66 ~~~~~~al~~~g~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~a 111 (132)
+ .+.+.|+|||- .+.+ ++....+.++|.+++.+|
T Consensus 323 ~-~a~~lLk~gG~----------lv~~-scs~~~~~~~f~~~v~~a 356 (396)
T PRK15128 323 M-LAIQLLNPGGI----------LLTF-SCSGLMTSDLFQKIIADA 356 (396)
T ss_pred H-HHHHHcCCCeE----------EEEE-eCCCcCCHHHHHHHHHHH
Confidence 6 67788888861 1111 223334567777776655
No 277
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=21.45 E-value=97 Score=24.30 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=27.6
Q ss_pred CccCCHHHHHHHHHhCCCeee--------EEEecCCcceEEEE
Q 043665 96 GKEGSVYDWKKLFLAAGFSHY--------KITPNLGLWSLIEA 130 (132)
Q Consensus 96 g~~rt~~e~~~ll~~aGf~~~--------~~~~~~~~~~~ie~ 130 (132)
|..||++|.+++-++-||... +++|.+-+..|+|.
T Consensus 132 GpfY~~eea~~l~~~~gw~~keD~~rG~RRVVpSP~P~~IvE~ 174 (312)
T COG0549 132 GPFYSEEEAEELAKEYGWVFKEDAGRGYRRVVPSPKPVRIVEA 174 (312)
T ss_pred CCCcCHHHHHHHHhhcCcEEEecCCCCeeEecCCCCCccchhH
Confidence 788999999999999887653 35666667777775
No 278
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=21.36 E-value=1.6e+02 Score=23.68 Aligned_cols=30 Identities=10% Similarity=0.097 Sum_probs=22.8
Q ss_pred HHHHHHHhCCCe----eeEEEecCCcceEEEEEC
Q 043665 103 DWKKLFLAAGFS----HYKITPNLGLWSLIEAYP 132 (132)
Q Consensus 103 e~~~ll~~aGf~----~~~~~~~~~~~~~ie~~p 132 (132)
-+..++++.|+. ..++.+++...++||++|
T Consensus 122 lmd~i~~~~~ldL~l~pY~vi~tg~~~GlIE~V~ 155 (365)
T cd00894 122 IMESIWETESLDLCLLPYGCISTGDKIGMIEIVK 155 (365)
T ss_pred HHHHHHHHcCCCeEEEEEEEEEecCCceEEEEcC
Confidence 445667778743 467888888999999987
No 279
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=21.33 E-value=2.1e+02 Score=22.75 Aligned_cols=76 Identities=20% Similarity=0.201 Sum_probs=51.8
Q ss_pred eEEEehhhhcCCChHHHHHHHHHHhhhhCCCCC----CCCcchhhhhhhhhhcC-------CCc--cCCHHHHHHHHHhC
Q 043665 45 NVVLLKWILHDWSDEESLRYLKKKCEESIPSND----EGRKTQLCFDLLMATFL-------NGK--EGSVYDWKKLFLAA 111 (132)
Q Consensus 45 D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g----~~~~~~~~~dl~m~~~~-------~g~--~rt~~e~~~ll~~a 111 (132)
-+++.-.+|-+...|++..+++ -+.+..+... +.-...-.|.-.|..+. .|- .-|.+..+.-+.++
T Consensus 190 Ti~iaEcvLvYM~pe~S~~Li~-w~~~~F~~a~fv~YEQi~~~D~Fg~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~ 268 (335)
T KOG2918|consen 190 TIFIAECVLVYMEPEESANLIK-WAASKFENAHFVNYEQINPNDRFGKVMLANLKRRGCPLHGLETYNSIESQRSRFLKA 268 (335)
T ss_pred eeehhhhhheeccHHHHHHHHH-HHHHhCCcccEEEEeccCCCChHHHHHHHHHHhcCCCCchhhhcccHHHHHHHHHhc
Confidence 3555568888899999999999 8888777665 21112233444444432 122 26778899999999
Q ss_pred CCeeeEEEec
Q 043665 112 GFSHYKITPN 121 (132)
Q Consensus 112 Gf~~~~~~~~ 121 (132)
||+.+.+.+.
T Consensus 269 Gw~~v~a~Dm 278 (335)
T KOG2918|consen 269 GWEYVIAVDM 278 (335)
T ss_pred CCceeehhhH
Confidence 9998887654
No 280
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=21.13 E-value=99 Score=22.59 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=38.3
Q ss_pred CCCeEEEeec-hhHHhhhcC------CCCeEEEe--ccccCC---CceEEEehhhhcCCChHHHHHHHHHHhhhhCCCCC
Q 043665 10 PDIKCIVLIC-LLWWIIWWG------TNNLEFFL--EFEAIP---PANVVLLKWILHDWSDEESLRYLKKKCEESIPSND 77 (132)
Q Consensus 10 P~l~~~v~Dl-p~v~~~a~~------~~ri~~~~--~~~~~P---~~D~~ll~~vlh~~~de~~~~iL~~~~~~al~~~g 77 (132)
|.-+++.+|. |..++.|++ ..+|+++. -...+| +||.|++.--....+. .+++ .|++||
T Consensus 96 ~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ip~----~l~~-----qL~~gG 166 (209)
T PF01135_consen 96 PVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTAAVPEIPE----ALLE-----QLKPGG 166 (209)
T ss_dssp TTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESSBBSS--H----HHHH-----TEEEEE
T ss_pred ccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEeeccchHHH----HHHH-----hcCCCc
Confidence 3345677775 778888775 45788887 444333 4999999877755543 2444 577888
No 281
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=20.70 E-value=34 Score=18.36 Aligned_cols=11 Identities=36% Similarity=0.685 Sum_probs=8.4
Q ss_pred HHHHHHCCCCe
Q 043665 3 RAIATAFPDIK 13 (132)
Q Consensus 3 ~~l~~~~P~l~ 13 (132)
.+++++||+++
T Consensus 20 k~IL~k~PeIk 30 (39)
T PF08557_consen 20 KEILKKHPEIK 30 (39)
T ss_pred HHHHHhChHHH
Confidence 46788898875
No 282
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=20.64 E-value=1e+02 Score=25.23 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=19.8
Q ss_pred CCCccCCHHHHHHHHHhCCCeee
Q 043665 94 LNGKEGSVYDWKKLFLAAGFSHY 116 (132)
Q Consensus 94 ~~g~~rt~~e~~~ll~~aGf~~~ 116 (132)
+++......||..++++||++-+
T Consensus 49 Ftae~wDP~eWar~fK~aGAKyv 71 (430)
T COG3669 49 FTAENWDPREWARLFKEAGAKYV 71 (430)
T ss_pred cCcccCCHHHHHHHHHHcCCcEE
Confidence 57777889999999999999843
No 283
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=20.60 E-value=1.9e+02 Score=23.26 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=22.3
Q ss_pred HHHHHHhCCCe----eeEEEecCCcceEEEEEC
Q 043665 104 WKKLFLAAGFS----HYKITPNLGLWSLIEAYP 132 (132)
Q Consensus 104 ~~~ll~~aGf~----~~~~~~~~~~~~~ie~~p 132 (132)
+..++++.|+. ..++.+++...++||++|
T Consensus 118 md~i~k~~~ldL~l~pY~vi~tg~~~GlIE~V~ 150 (361)
T cd05174 118 MDVLWKQEGLDLRMTPYGCLSTGDKTGLIEVVK 150 (361)
T ss_pred HHHHHHHCCCCeeeEEEEEEEecCCceEEEEeC
Confidence 45667777743 467888888999999987
No 284
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=20.43 E-value=1.8e+02 Score=25.13 Aligned_cols=53 Identities=13% Similarity=0.213 Sum_probs=33.2
Q ss_pred cCCChHH-HHHHHHHHhhhhCCCCC-CCCcchhhhhhhhhhcCCCccCCHHHHHHHHHhC
Q 043665 54 HDWSDEE-SLRYLKKKCEESIPSND-EGRKTQLCFDLLMATFLNGKEGSVYDWKKLFLAA 111 (132)
Q Consensus 54 h~~~de~-~~~iL~~~~~~al~~~g-~~~~~~~~~dl~m~~~~~g~~rt~~e~~~ll~~a 111 (132)
.||.-.. ...++. ++.+.|++++ ..+..+..+.-+.+ -|.+|.+||..+..+.
T Consensus 4 eDW~S~kFRq~vIs-ried~l~~n~q~~~k~a~~mE~hVF----~K~~tkDEYl~lvAkl 58 (742)
T KOG4274|consen 4 EDWPSPKFRQHVIS-RIEDELRKNGQAHSKSAKDMESHVF----LKAKTKDEYLSLVAKL 58 (742)
T ss_pred cccccHHHHHHHHH-HhhhhhhhhhhccCcchHHHHHHHH----HhhhhHHHHHHHHHHH
Confidence 3774444 667888 9999999988 33332222222222 3558888988887664
No 285
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.27 E-value=1.1e+02 Score=16.91 Aligned_cols=15 Identities=7% Similarity=0.069 Sum_probs=12.5
Q ss_pred HHHHHHHHHhCCCee
Q 043665 101 VYDWKKLFLAAGFSH 115 (132)
Q Consensus 101 ~~e~~~ll~~aGf~~ 115 (132)
.+...+.|+++||++
T Consensus 50 ~~~~~~~L~~~G~~v 64 (65)
T cd04882 50 IEKAIEVLQERGVEL 64 (65)
T ss_pred HHHHHHHHHHCCceE
Confidence 778888999999864
No 286
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=20.19 E-value=1.9e+02 Score=23.22 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=22.8
Q ss_pred HHHHHHHhCCCe----eeEEEecCCcceEEEEEC
Q 043665 103 DWKKLFLAAGFS----HYKITPNLGLWSLIEAYP 132 (132)
Q Consensus 103 e~~~ll~~aGf~----~~~~~~~~~~~~~ie~~p 132 (132)
-+..++++.|+. ..++.+++...++||++|
T Consensus 121 lm~~i~~~~~ldL~l~pY~vl~t~~~~GlIE~V~ 154 (366)
T cd05165 121 IMDSIWKEEGLDLRMLPYGCLSTGDKIGLIEVVR 154 (366)
T ss_pred HHHHHHHhCCCCceeEEEEEEEecCCceEEEEeC
Confidence 455677777743 467888888999999986
No 287
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=20.18 E-value=1.9e+02 Score=16.55 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHhCCCeeeEEEecCC
Q 043665 99 GSVYDWKKLFLAAGFSHYKITPNLG 123 (132)
Q Consensus 99 rt~~e~~~ll~~aGf~~~~~~~~~~ 123 (132)
-+...+..++++.|+++ .+...++
T Consensus 36 ~s~~~i~~~~~~~G~~~-~~~~~~~ 59 (67)
T cd03421 36 VAKENVSRFAESRGYEV-SVEEKGG 59 (67)
T ss_pred hHHHHHHHHHHHcCCEE-EEEecCC
Confidence 44678999999999999 5555544
No 288
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=20.02 E-value=1.4e+02 Score=20.07 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=19.0
Q ss_pred CCccCCHHHHHHHHHhCCCeeeEEEecC
Q 043665 95 NGKEGSVYDWKKLFLAAGFSHYKITPNL 122 (132)
Q Consensus 95 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 122 (132)
+...-+.+.+.+||++.|++...+.+.+
T Consensus 58 ~p~~~~v~~V~~wL~~~G~~~~~~~~~~ 85 (143)
T PF09286_consen 58 APSPEDVAAVKSWLKSHGLTVVEVSANG 85 (143)
T ss_dssp S--HHHHHHHHHHHHHCT-EEEEEETTT
T ss_pred CCCHHHHHHHHHHHHHcCCceeEEeCCC
Confidence 3334456789999999999998865443
Done!