Query 043666
Match_columns 680
No_of_seqs 143 out of 215
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 07:11:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043666.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043666hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06419 COG6: Conserved oligo 100.0 1E-148 3E-153 1277.1 69.4 604 26-678 1-618 (618)
2 KOG3758 Uncharacterized conser 100.0 2E-147 5E-152 1199.5 64.1 632 7-680 14-653 (655)
3 PF04129 Vps52: Vps52 / Sac2 f 99.9 5.3E-18 1.2E-22 192.3 47.6 409 59-540 3-486 (508)
4 KOG1961 Vacuolar sorting prote 99.8 1.7E-15 3.6E-20 166.7 47.5 456 42-566 47-583 (683)
5 PF09763 Sec3_C: Exocyst compl 99.0 0.00021 4.5E-09 85.1 52.8 360 45-413 5-469 (701)
6 PF03081 Exo70: Exo70 exocyst 98.5 7.1E-06 1.5E-10 89.9 20.0 319 280-679 8-369 (371)
7 KOG2344 Exocyst component prot 98.0 0.083 1.8E-06 62.1 41.3 141 521-679 462-609 (623)
8 PF10191 COG7: Golgi complex c 96.4 3.6 7.9E-05 49.9 34.7 266 56-372 56-322 (766)
9 PF04136 Sec34: Sec34-like fam 93.9 5.6 0.00012 38.8 17.7 141 61-205 5-149 (157)
10 PRK04778 septation ring format 90.1 38 0.00082 39.8 21.7 128 21-148 326-471 (569)
11 PF07889 DUF1664: Protein of u 84.7 18 0.0004 34.0 11.9 81 42-122 37-120 (126)
12 PF10475 DUF2450: Protein of u 81.5 79 0.0017 33.7 21.4 176 43-229 37-215 (291)
13 PF09744 Jnk-SapK_ap_N: JNK_SA 80.8 49 0.0011 32.4 13.7 40 2-41 3-48 (158)
14 PF06160 EzrA: Septation ring 77.7 1.5E+02 0.0033 34.8 23.0 200 22-241 323-542 (560)
15 KOG2307 Low density lipoprotei 77.5 1.5E+02 0.0033 34.6 18.2 161 44-241 49-233 (705)
16 PF07106 TBPIP: Tat binding pr 74.3 25 0.00053 34.4 9.8 77 64-142 73-151 (169)
17 PF06148 COG2: COG (conserved 71.1 4.8 0.0001 37.8 3.8 79 48-126 40-118 (133)
18 PF04124 Dor1: Dor1-like famil 67.3 1.9E+02 0.0042 31.5 20.2 105 42-162 34-140 (338)
19 PF05266 DUF724: Protein of un 60.7 61 0.0013 32.7 9.5 23 11-33 56-80 (190)
20 TIGR03007 pepcterm_ChnLen poly 59.4 1.4E+02 0.0031 34.0 13.6 112 23-134 258-381 (498)
21 PF08826 DMPK_coil: DMPK coile 59.1 81 0.0017 26.0 8.2 49 70-118 11-59 (61)
22 PRK09039 hypothetical protein; 58.9 1.3E+02 0.0029 33.0 12.6 69 63-131 130-199 (343)
23 PF10392 COG5: Golgi transport 57.7 1.1E+02 0.0025 28.6 10.4 71 44-114 43-116 (132)
24 TIGR02132 phaR_Bmeg polyhydrox 56.4 2.2E+02 0.0048 28.5 13.2 116 19-138 32-147 (189)
25 PRK10884 SH3 domain-containing 55.6 1.4E+02 0.0031 30.4 11.3 21 37-58 86-106 (206)
26 PF04048 Sec8_exocyst: Sec8 ex 54.8 2E+02 0.0043 27.4 11.8 94 22-115 22-117 (142)
27 PF09177 Syntaxin-6_N: Syntaxi 53.8 57 0.0012 28.9 7.2 67 74-140 9-81 (97)
28 PF02403 Seryl_tRNA_N: Seryl-t 53.1 1.2E+02 0.0027 27.1 9.4 70 57-126 23-95 (108)
29 cd00179 SynN Syntaxin N-termin 52.3 1.4E+02 0.003 28.1 10.2 32 59-90 2-33 (151)
30 PF13747 DUF4164: Domain of un 51.6 77 0.0017 28.0 7.5 54 48-105 35-88 (89)
31 PF12081 GldM_N: GldM N-termin 50.3 2.4E+02 0.0052 28.2 12.0 114 60-190 1-120 (194)
32 PF07340 Herpes_IE1: Cytomegal 49.7 4.1E+02 0.0089 29.6 18.2 156 124-300 151-327 (392)
33 PF10146 zf-C4H2: Zinc finger- 48.6 1.3E+02 0.0028 31.3 9.8 59 59-117 42-100 (230)
34 KOG4657 Uncharacterized conser 48.0 2.1E+02 0.0046 29.6 10.8 76 51-126 39-114 (246)
35 COG1579 Zn-ribbon protein, pos 47.7 1.3E+02 0.0029 31.4 9.7 23 177-199 166-188 (239)
36 COG4985 ABC-type phosphate tra 47.7 1.9E+02 0.0041 30.1 10.5 94 38-133 153-249 (289)
37 KOG1937 Uncharacterized conser 47.6 3E+02 0.0066 31.4 12.8 68 94-169 399-466 (521)
38 TIGR03185 DNA_S_dndD DNA sulfu 46.7 5.8E+02 0.013 30.5 16.9 66 217-291 564-631 (650)
39 PF06785 UPF0242: Uncharacteri 46.4 2.5E+02 0.0055 30.8 11.6 128 58-193 108-256 (401)
40 PF04740 LXG: LXG domain of WX 46.2 3.1E+02 0.0067 27.2 12.8 26 143-168 92-119 (204)
41 COG4768 Uncharacterized protei 45.8 66 0.0014 30.6 6.4 47 68-114 22-68 (139)
42 smart00503 SynN Syntaxin N-ter 45.0 2.3E+02 0.0049 25.3 10.1 31 59-89 4-34 (117)
43 PF08656 DASH_Dad3: DASH compl 44.3 86 0.0019 27.2 6.4 26 57-82 4-29 (78)
44 PF00015 MCPsignal: Methyl-acc 44.1 84 0.0018 31.0 7.6 70 64-133 143-212 (213)
45 TIGR03017 EpsF chain length de 43.3 4.9E+02 0.011 29.1 14.4 95 23-131 265-365 (444)
46 KOG3244 Protein involved in ub 43.3 27 0.00059 36.1 3.8 75 221-302 98-175 (267)
47 PF04156 IncA: IncA protein; 43.1 2.8E+02 0.0061 27.3 11.1 61 67-127 127-187 (191)
48 PF06103 DUF948: Bacterial pro 42.9 1.1E+02 0.0024 26.5 7.3 46 69-114 18-63 (90)
49 PF12495 Vip3A_N: Vegetative i 42.8 2.7E+02 0.0059 26.1 9.8 81 38-121 62-142 (177)
50 PF07544 Med9: RNA polymerase 42.7 1.5E+02 0.0034 25.6 8.0 50 81-130 32-81 (83)
51 PF03670 UPF0184: Uncharacteri 42.7 89 0.0019 27.4 6.3 44 62-112 25-68 (83)
52 PRK12704 phosphodiesterase; Pr 41.3 5.8E+02 0.013 29.8 14.7 14 262-275 249-262 (520)
53 PRK10884 SH3 domain-containing 40.9 1.3E+02 0.0029 30.7 8.4 18 102-119 136-153 (206)
54 COG4026 Uncharacterized protei 40.8 3.6E+02 0.0077 28.0 11.1 69 71-139 157-231 (290)
55 PF07393 Sec10: Exocyst comple 39.5 7.6E+02 0.017 29.8 29.3 146 180-354 97-246 (710)
56 PF14662 CCDC155: Coiled-coil 39.0 4.3E+02 0.0093 26.8 11.4 55 60-114 57-111 (193)
57 PF10805 DUF2730: Protein of u 38.8 1.6E+02 0.0035 26.7 7.8 9 69-77 48-56 (106)
58 KOG0994 Extracellular matrix g 38.5 9.9E+02 0.021 30.8 20.6 19 215-233 1738-1756(1758)
59 TIGR01005 eps_transp_fam exopo 38.4 3.4E+02 0.0074 32.9 12.9 28 105-132 373-400 (754)
60 PF13805 Pil1: Eisosome compon 38.4 3.8E+02 0.0082 28.7 11.4 93 3-95 51-156 (271)
61 PF04728 LPP: Lipoprotein leuc 38.1 1.8E+02 0.004 23.6 7.0 45 70-114 3-47 (56)
62 PF08687 ASD2: Apx/Shroom doma 38.0 3.1E+02 0.0067 29.2 10.7 95 46-141 122-229 (264)
63 PF10168 Nup88: Nuclear pore c 37.1 8.3E+02 0.018 29.8 15.6 15 5-19 503-517 (717)
64 cd07922 CarBa CarBa is the A s 37.1 46 0.001 29.0 3.7 39 108-146 11-49 (81)
65 KOG1962 B-cell receptor-associ 36.8 1.9E+02 0.0041 29.9 8.7 73 43-115 136-210 (216)
66 TIGR00634 recN DNA repair prot 36.4 7.6E+02 0.017 28.9 15.5 166 56-243 144-315 (563)
67 PF08614 ATG16: Autophagy prot 36.2 2.1E+02 0.0046 28.6 9.0 74 47-120 90-166 (194)
68 COG1196 Smc Chromosome segrega 35.0 1.1E+03 0.024 30.4 17.8 28 266-297 1050-1077(1163)
69 PF13874 Nup54: Nucleoporin co 34.2 1.5E+02 0.0033 28.2 7.2 77 64-142 31-114 (141)
70 PF10205 KLRAQ: Predicted coil 34.0 3.7E+02 0.008 24.5 9.0 65 61-125 3-67 (102)
71 COG4942 Membrane-bound metallo 33.9 4.8E+02 0.01 29.6 11.9 73 41-114 38-110 (420)
72 PF04136 Sec34: Sec34-like fam 33.7 3.5E+02 0.0077 26.3 9.8 84 65-161 2-85 (157)
73 KOG0298 DEAD box-containing he 33.2 1.2E+03 0.026 30.4 16.0 219 49-281 906-1151(1394)
74 KOG2148 Exocyst protein Sec3 [ 32.6 9.6E+02 0.021 28.9 46.2 168 79-250 227-429 (867)
75 PF08317 Spc7: Spc7 kinetochor 32.4 6.8E+02 0.015 27.2 13.2 44 50-93 150-193 (325)
76 PF14723 SSFA2_C: Sperm-specif 32.2 5.1E+02 0.011 25.8 10.4 78 7-93 56-135 (179)
77 PF10157 DUF2365: Uncharacteri 31.6 4.9E+02 0.011 25.3 11.9 70 46-115 53-126 (149)
78 PF14942 Muted: Organelle biog 31.4 4.3E+02 0.0094 25.5 9.8 20 144-163 121-140 (145)
79 PF10168 Nup88: Nuclear pore c 31.0 1E+03 0.022 29.0 15.0 10 149-158 636-645 (717)
80 PF10146 zf-C4H2: Zinc finger- 30.3 2.8E+02 0.006 28.9 8.8 61 54-114 26-90 (230)
81 COG4694 Uncharacterized protei 29.7 1E+03 0.022 28.3 14.3 74 328-402 631-710 (758)
82 KOG2072 Translation initiation 29.3 2.4E+02 0.0053 34.5 9.0 86 539-649 363-448 (988)
83 PF08965 DUF1870: Domain of un 28.8 3.4E+02 0.0074 25.4 8.1 23 183-205 1-23 (118)
84 PRK11637 AmiB activator; Provi 28.7 5E+02 0.011 29.2 11.4 52 64-115 69-120 (428)
85 PF13851 GAS: Growth-arrest sp 28.6 6.3E+02 0.014 25.6 12.8 107 72-178 29-144 (201)
86 PF05531 NPV_P10: Nucleopolyhe 28.1 3.9E+02 0.0085 23.0 8.1 57 67-127 8-64 (75)
87 PLN02678 seryl-tRNA synthetase 28.1 3.7E+02 0.0079 30.9 10.1 64 62-125 32-98 (448)
88 PF10046 BLOC1_2: Biogenesis o 27.5 3.7E+02 0.0081 24.0 8.1 59 44-103 41-99 (99)
89 KOG4643 Uncharacterized coiled 27.3 7.3E+02 0.016 31.3 12.5 72 40-112 486-558 (1195)
90 PF15188 CCDC-167: Coiled-coil 27.2 2.6E+02 0.0057 24.6 6.7 29 67-95 2-30 (85)
91 KOG0972 Huntingtin interacting 26.6 6.7E+02 0.015 27.1 10.8 72 53-124 249-324 (384)
92 KOG4603 TBP-1 interacting prot 26.5 4.6E+02 0.01 26.2 8.9 57 64-120 80-138 (201)
93 PF06216 RTBV_P46: Rice tungro 26.2 5E+02 0.011 27.3 9.6 109 26-167 40-148 (389)
94 TIGR00606 rad50 rad50. This fa 25.9 1.2E+03 0.025 30.6 15.2 144 41-189 283-434 (1311)
95 cd07321 Extradiol_Dioxygenase_ 25.9 85 0.0018 26.9 3.5 24 123-146 25-48 (77)
96 PHA02562 46 endonuclease subun 25.8 8.1E+02 0.017 28.3 12.8 98 63-167 299-398 (562)
97 PF06046 Sec6: Exocyst complex 25.4 1.1E+03 0.024 27.3 15.8 72 340-411 148-225 (566)
98 COG0598 CorA Mg2+ and Co2+ tra 25.1 8.9E+02 0.019 26.1 15.3 146 42-200 119-271 (322)
99 PRK13837 two-component VirA-li 24.9 2.7E+02 0.0058 34.2 9.0 70 47-130 46-115 (828)
100 PRK11677 hypothetical protein; 24.7 3.8E+02 0.0083 25.6 8.0 60 32-95 20-79 (134)
101 TIGR03319 YmdA_YtgF conserved 24.7 1.2E+03 0.025 27.3 14.9 15 262-276 243-257 (514)
102 PRK10869 recombination and rep 24.6 1.2E+03 0.026 27.4 14.8 28 178-205 359-386 (553)
103 PF06156 DUF972: Protein of un 24.5 3.3E+02 0.0072 24.9 7.3 47 67-120 5-51 (107)
104 PLN02320 seryl-tRNA synthetase 24.4 3.1E+02 0.0067 31.9 8.7 63 62-124 92-156 (502)
105 COG4026 Uncharacterized protei 24.2 8.3E+02 0.018 25.5 10.6 18 42-59 108-125 (290)
106 PF06148 COG2: COG (conserved 24.2 74 0.0016 29.8 3.1 72 44-115 29-100 (133)
107 PF00804 Syntaxin: Syntaxin; 24.1 3.5E+02 0.0075 23.1 7.3 30 59-88 3-32 (103)
108 KOG3987 Uncharacterized conser 24.1 1.8E+02 0.0038 30.1 5.8 68 611-679 36-103 (288)
109 COG2841 Uncharacterized protei 23.9 4.6E+02 0.0099 22.4 7.3 63 63-127 3-66 (72)
110 PF10303 DUF2408: Protein of u 23.7 1.3E+02 0.0027 28.7 4.6 89 82-170 12-127 (134)
111 PF15469 Sec5: Exocyst complex 23.6 6.9E+02 0.015 24.4 18.4 102 62-164 12-119 (182)
112 KOG4360 Uncharacterized coiled 23.5 4E+02 0.0086 31.0 9.0 67 65-131 200-266 (596)
113 PF10234 Cluap1: Clusterin-ass 23.4 7.7E+02 0.017 26.3 10.7 51 76-126 168-218 (267)
114 PF04124 Dor1: Dor1-like famil 23.2 7.4E+02 0.016 27.0 11.1 68 42-113 22-89 (338)
115 COG3206 GumC Uncharacterized p 23.0 1E+03 0.022 26.9 12.7 60 72-138 344-403 (458)
116 PF04111 APG6: Autophagy prote 23.0 3.1E+02 0.0066 29.8 8.0 29 122-150 113-142 (314)
117 PF04048 Sec8_exocyst: Sec8 ex 22.9 6.1E+02 0.013 24.0 9.2 57 62-118 71-127 (142)
118 PF06248 Zw10: Centromere/kine 22.6 1.3E+03 0.028 27.2 17.8 141 58-202 31-185 (593)
119 KOG2391 Vacuolar sorting prote 22.4 1.1E+03 0.024 26.2 12.5 91 43-153 208-298 (365)
120 PF05531 NPV_P10: Nucleopolyhe 22.1 2.5E+02 0.0053 24.2 5.5 19 66-84 14-32 (75)
121 TIGR03517 GldM_gliding gliding 22.1 7.9E+02 0.017 28.8 11.4 117 55-190 26-151 (523)
122 PRK00106 hypothetical protein; 22.0 1.3E+03 0.029 27.1 15.1 15 262-276 264-278 (535)
123 PF15066 CAGE1: Cancer-associa 21.8 1E+03 0.022 27.5 11.6 90 75-164 388-490 (527)
124 PF05008 V-SNARE: Vesicle tran 21.8 4.7E+02 0.01 21.8 8.6 52 67-118 22-74 (79)
125 PF09726 Macoilin: Transmembra 21.7 1.5E+03 0.033 27.6 16.1 23 146-168 616-638 (697)
126 PF10186 Atg14: UV radiation r 21.6 9.2E+02 0.02 25.0 12.5 15 41-55 34-48 (302)
127 PF08317 Spc7: Spc7 kinetochor 21.6 1E+03 0.023 25.7 12.1 17 149-165 255-271 (325)
128 PF06103 DUF948: Bacterial pro 21.5 4.3E+02 0.0092 22.8 7.2 38 69-106 25-62 (90)
129 PF08673 RsbU_N: Phosphoserine 21.4 4.7E+02 0.01 22.5 7.2 65 369-441 4-74 (77)
130 PF14523 Syntaxin_2: Syntaxin- 21.4 5.5E+02 0.012 22.3 8.2 21 146-166 76-96 (102)
131 PF06295 DUF1043: Protein of u 21.0 6.9E+02 0.015 23.4 9.2 49 48-96 28-76 (128)
132 PF06005 DUF904: Protein of un 20.9 5.2E+02 0.011 21.9 10.0 58 63-120 4-61 (72)
133 PF15456 Uds1: Up-regulated Du 20.9 5.3E+02 0.011 24.2 8.0 68 22-95 25-99 (124)
134 KOG0811 SNARE protein PEP12/VA 20.6 3.2E+02 0.007 29.1 7.3 91 61-167 29-121 (269)
135 PF15458 NTR2: Nineteen comple 20.5 2.3E+02 0.005 29.8 6.3 49 81-129 205-253 (254)
136 KOG0718 Molecular chaperone (D 20.5 5.3E+02 0.012 29.7 9.2 58 573-648 5-64 (546)
137 KOG1458 Fructose-1,6-bisphosph 20.4 40 0.00086 36.2 0.5 20 273-292 252-271 (343)
138 PF08700 Vps51: Vps51/Vps67; 20.2 5.3E+02 0.012 21.7 9.6 48 43-94 28-75 (87)
139 PRK11637 AmiB activator; Provi 20.2 1.2E+03 0.027 26.0 14.8 58 63-120 61-118 (428)
140 TIGR00414 serS seryl-tRNA synt 20.1 5.4E+02 0.012 29.1 9.5 64 62-125 29-96 (418)
No 1
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=100.00 E-value=1.3e-148 Score=1277.13 Aligned_cols=604 Identities=43% Similarity=0.718 Sum_probs=577.9
Q ss_pred HHHHHhhhhccCCCHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHH
Q 043666 26 ASLKTLSTFYEENTPHARRNLRSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIE 105 (680)
Q Consensus 26 ~aL~~Ls~~~~~nt~~aRr~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~ 105 (680)
|||+.||+++..||+++||+||++||++++++|++||++|++|+++|++++++|++|+++|++|+++|..++.+|+++++
T Consensus 1 dal~~L~~~~~~nt~~aRr~LR~~iE~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~ 80 (618)
T PF06419_consen 1 DALKKLSEFGFENTLEARRNLRSDIEKRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLE 80 (618)
T ss_pred CcHHHhcccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHhccCC--CCChhHHHHHHHHHHHHHHHHHhhcccCcchHHHHHHHH
Q 043666 106 TTERLKRDLDVNTQRQEIVSCFLRDYQLSNEEINALRDE--DLDESFFKALAHVQEIHANCKVLLRTHHQRAGLELMDMM 183 (680)
Q Consensus 106 e~~~L~~~~~~l~~K~~ll~~Fl~~F~Ls~~E~~~L~~~--~Vd~~FF~aL~rv~~I~~~c~~LL~~~~q~aGleiMe~~ 183 (680)
+++.|+++++.++.|++++.+|+++||||++|+++|++| |||++||+||+||++||+||++||+.++|+||++||++|
T Consensus 81 ~~~~L~~~~~~~~~k~~ll~~f~~~f~Ls~~E~~~L~~~~~~v~~~FF~~L~r~~~I~~~c~~LL~~~~~~ag~~iM~~~ 160 (618)
T PF06419_consen 81 EASELREQKEELELKKKLLDAFLERFTLSEEEEDALTSGEEPVDDEFFDALDRVQKIHEDCKILLSTENQRAGLEIMEQM 160 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCccchHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 043666 184 AMYQEGAYERLCRWVQAECRKLGDTENPEVGELLKTAVRCLKERPVLFKYCAEEVANMRHNALFRRFLSALTRGGPGGLP 263 (680)
Q Consensus 184 s~~~e~A~erL~~w~q~e~~~l~~~~~~e~~~~l~~al~~L~~rp~lf~~~ld~~a~~R~~~L~~~F~~aLt~g~~~g~~ 263 (680)
++++|+||||||+|+|++|+++ +.++|++++.+++|+++|++||+||++|+|+|+++||++|+++|++|||+|||||.|
T Consensus 161 ~~~~e~a~erl~~w~q~e~~~l-~~~~~~~~~~l~~al~~L~~rp~lf~~~l~~~~~~R~~~l~~~F~~aLt~g~~~~~~ 239 (618)
T PF06419_consen 161 SKYLERAYERLYRWVQRECRSL-NLDNPEVSPLLRRALRYLRERPVLFNYCLDEFAEARSKALLRRFLDALTRGGPGGSP 239 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-hhcCcccchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 9999999999999999999997 678999999999999999999999999999999999999999999999999999987
Q ss_pred -CCccccccCcchhhhhHHHHHHHHhhhHHHHHHhhcCCCC--CCCCcccccccc-cCCCCCCCcchHHHHHHHHhhhcc
Q 043666 264 -RPIEVHAHDPLRYVGDMLGWLHQALASERELVLGLLDPDV--GDTGLTASQFSK-SQNGSGKTDSDLTFVLDRIFEGVC 339 (680)
Q Consensus 264 -rPIel~AhDP~RYvgDmLAwvHqaiasE~Efl~sLF~~~~--~~~~~~~~~~~~-~~~~~~~~~~~i~~lld~i~~gl~ 339 (680)
||||+|||||+||||||||||||++|+|+||+++||+++. ...|+.++..++ |. ...+.++||+|++|||
T Consensus 240 ~rPIel~AhDP~RYvGDmLAwvHq~~a~E~E~l~~Lf~~~~~~~~~~~~~~~~~~~~~------~~~~~~lld~i~~~l~ 313 (618)
T PF06419_consen 240 SRPIELHAHDPLRYVGDMLAWVHQAIASEREFLESLFKFDEDEIAEGSSSGFDSNPWS------EELINELLDRILEGLC 313 (618)
T ss_pred CCchhhhccChHHHHHHHHHHHHHHhhhHHHHHHHHhcccccccccccccccccccch------HHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999875 223333333322 22 4588999999999999
Q ss_pred chhHHHHHHHhhcCcchHHHHHHHhHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCC
Q 043666 340 RPFKVRVEQVLQSQPSLIISYKLSNTLEFYSYTISDLLGRETALCNTLWVLKEAAQKTYFDILKSRGEKLLRY-PPLVAA 418 (680)
Q Consensus 340 rplk~RvEqvl~s~~~~i~~yki~nLL~fY~~t~~k~i~~~s~L~~tl~~L~~~a~~~f~~~l~~~~~~l~~~-~~~~~~ 418 (680)
||||+||||||+++++++++|+|+|||.||+.||+|+||+++.|+.||.+|++.|+++|++++++++++++++ ++.||.
T Consensus 314 rplk~RvEQvi~se~~~i~~yki~~LL~fY~~~~~k~i~~~s~L~~tl~~L~~~a~~~f~~~l~~~~~~l~~~~~~~~~~ 393 (618)
T PF06419_consen 314 RPLKIRVEQVISSEEDPITLYKIANLLSFYQMTFSKLIGEDSSLIETLKELQDLAQKKFFSSLRDHVAKLLRSAPEPPPA 393 (618)
T ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhcCCCCCCCCC--CChHHHHHHhhhHHHHHHHHHHHhccCCCCCCCccccccCCCCCC
Q 043666 419 DLSPPTAVRDGVSVLLEIIETHNSTMVPVSRET--PDFNLVISALLDPIIQMCEQAAEAHKSKGAGHSSRRRLSSDSGNV 496 (680)
Q Consensus 419 DL~PP~~l~~~l~~L~eil~~~~~s~~~~~~~~--~~f~~vl~~~ldPli~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 496 (680)
||+||+||.|+++.|++||++|++|+.+.++++ .+|++|+++++||++++|+++|..++++
T Consensus 394 DL~PP~~l~d~l~~L~~il~~~~~s~~~~~~~~~~~~~~~Il~~~idpll~~c~~~a~~L~~~----------------- 456 (618)
T PF06419_consen 394 DLSPPEWLIDFLSLLREILDVYDSSLSPDDDRENDNDFKPILDEPIDPLLQMCQKSASPLAPK----------------- 456 (618)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccCCccchhhhhHHHHHHHHHhHHHHHHHHHHhhccCCh-----------------
Confidence 999999999999999999999999999987777 9999999999999999999999988554
Q ss_pred ccchhhhhhcCCCCCCCCCCCCCcchHHHHhhHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Q 043666 497 SKSSVDAILSNSSSTPSSQSNETPSKIFLINCLCAIQQPLIGHEVAAEYVKNLGSMIDNHLRILVDKEVDTILRRCGLLP 576 (680)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iNcl~~i~s~L~~~~f~~~~~~~L~~~i~~~~~~L~~~q~~~lL~~~GL~~ 576 (680)
++++||+||||++|+++|+||+|+++++++|+++|++++++|+++|++++|++|||++
T Consensus 457 ----------------------~~~~if~iNCl~~i~s~L~~~~~~~~~~e~L~~~id~~~~~Lv~~Q~~~lL~~sGL~~ 514 (618)
T PF06419_consen 457 ----------------------DDRAIFMINCLDLIQSTLSPFEFTSERVEELQDQIDAHVDTLVEEQASFLLERSGLGD 514 (618)
T ss_pred ----------------------hhhHHHHHHhHHHHHHHccChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHH
Confidence 2358999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccc----cCCCCcccCCCCCHHHHHHHHHHhHhhhhcC-CCChhhhhhccChHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 577 KMRHFRSK----EVSLPLAEIEDTSPTSLSECLKAFFGLVLGS-ESSLPEFELLQVPKLRSEACIQVARSLAEAYEQIYQ 651 (680)
Q Consensus 577 ~~~~~~~~----~~~~~ls~~p~~~~~~l~~~l~~f~~~L~s~-~~al~~l~~L~sp~l~~~i~~~~~~~~~~~Y~~i~~ 651 (680)
+|++++|+ +.++|++++|+|++++|.+++++|++||+++ ++++|+|.+|+||++|+.|+++|++.||++|+.||+
T Consensus 515 ~~~~l~~i~~~~~~~~pls~~p~~~~~~l~~a~~kld~fL~sa~~d~~~~L~~L~Sp~l~~~I~~~a~~~f~~~Y~~v~~ 594 (618)
T PF06419_consen 515 LYNALNMIFFDYDMYGPLSENPGMDPDSLSNALQKLDDFLPSALTDAQPNLFKLQSPKLRDDIRERAFERFCKAYEKVYE 594 (618)
T ss_pred HHHHHHhhccCCcccCCcccCccCCHHHHHHHHHHHHHHHcccchhhhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999965 5678999999999999999999999999765 577899999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCcccCCCHHHHHHhh
Q 043666 652 AIMDPKNGHPDPKSLARHPPDQIRTIL 678 (680)
Q Consensus 652 ~v~dp~n~y~~~~~~l~~tp~qv~~lL 678 (680)
+|+||.|||+ ++++|||+||++||
T Consensus 595 ~v~d~~n~y~---sl~~~tpeeI~~LL 618 (618)
T PF06419_consen 595 AVMDPDNGYE---SLFPRTPEEIRTLL 618 (618)
T ss_pred HHhChhcccc---cccCCCHHHHhhcC
Confidence 9999999998 89999999999987
No 2
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.5e-147 Score=1199.51 Aligned_cols=632 Identities=44% Similarity=0.700 Sum_probs=591.2
Q ss_pred HHHHHHHHhccCCCC-hHHHHHHHHhhhhccCCCHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 7 LSRKLKKVLESRTET-PDLLASLKTLSTFYEENTPHARRNLRSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAEC 85 (680)
Q Consensus 7 l~~k~~kvL~~~~~~-~~~~~aL~~Ls~~~~~nt~~aRr~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~ 85 (680)
|..|++|+|+.++.. .+..+||+.||+|+.+|+.++||+||++||++++++|++||++|.++..++++++++|.+|+.+
T Consensus 14 lr~K~~kiL~~~~~~dkd~~~aL~~ls~~~~eN~~~~RRnLr~~iE~~~l~iN~e~l~ef~~i~~~l~~v~e~v~km~~t 93 (655)
T KOG3758|consen 14 LRNKLSKILNNRTYSDKDALAALRALSTFFEENSLRARRNLRSDIESRLLKINEEFLKEFKEIKRRLDRVSEDVEKMANT 93 (655)
T ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445999999997765 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHhccC-CCCChhHHHHHHHHHHHHHHH
Q 043666 86 CDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEIVSCFLRDYQLSNEEINALRD-EDLDESFFKALAHVQEIHANC 164 (680)
Q Consensus 86 c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl~~F~Ls~~E~~~L~~-~~Vd~~FF~aL~rv~~I~~~c 164 (680)
|+.|...+.+.+..|..++.++++|+++.+.++.|++++.+|+++|+||.+|...|++ ||||+.||.||+||++||++|
T Consensus 94 ~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~r~kii~~Fl~~fqLs~~E~~~L~~~g~i~e~FF~vL~rvqeIh~~~ 173 (655)
T KOG3758|consen 94 CDKLKSNLSTSKATTQDLIQKTETLKEEAAQLELRKKIINAFLDNFQLSSEELDLLTESGPIDEDFFKVLDRVQEIHDNC 173 (655)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred HHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcCCCCccchHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q 043666 165 KVLLRTHHQRAGLELMDMMAMYQEGAYERLCRWVQA-ECRKLGDTENPEVGELLKTAVRCLKERPVLFKYCAEEVANMRH 243 (680)
Q Consensus 165 ~~LL~~~~q~aGleiMe~~s~~~e~A~erL~~w~q~-e~~~l~~~~~~e~~~~l~~al~~L~~rp~lf~~~ld~~a~~R~ 243 (680)
+.||++++|+||.+||++|+.++|+||||||||.|. ||+++...+++|++++|++|+.+|++||++|+||+|+|+++|+
T Consensus 174 ~~Ll~~~~~~Ag~eime~M~~~~E~a~erl~r~~qs~e~~~l~~t~~~E~~~il~kA~~~L~~~p~lfk~~ide~~~aR~ 253 (655)
T KOG3758|consen 174 RLLLQTPNQTAGLEIMEKMALIQEGAYERLFRWSQSSECRNLTGTDSQEVSPILRKAFVFLSSRPVLFKYLIDEVGTARS 253 (655)
T ss_pred HHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhcCCccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 9999988899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCccccccCcchhhhhHHHHHHHHhhhHHHHHHhhcCCCCCCCCcccccccccCCCCCCC
Q 043666 244 NALFRRFLSALTRGGPGGLPRPIEVHAHDPLRYVGDMLGWLHQALASERELVLGLLDPDVGDTGLTASQFSKSQNGSGKT 323 (680)
Q Consensus 244 ~~L~~~F~~aLt~g~~~g~~rPIel~AhDP~RYvgDmLAwvHqaiasE~Efl~sLF~~~~~~~~~~~~~~~~~~~~~~~~ 323 (680)
++|+++|++|||+|||||.|||||+|||||+||||||||||||+||+|+|++++||+++..+.. ......|+... -.
T Consensus 254 ~~L~~~Fisaltrg~~~~~PrpIel~ahDPlRyIGDmLawlHq~ia~Ekelv~aLfd~~~~d~q--~n~~~~en~~~-vl 330 (655)
T KOG3758|consen 254 QSLLRQFISALTRGGPGGMPRPIELHAHDPLRYIGDMLAWLHQAIANEKELVEALFDFKKEDLQ--DNISISENLPN-VL 330 (655)
T ss_pred HHHHHHHHHHHccCCCCCCCCCccccCCChHHHHHHHHHHHHHHhhhHHHHHHHHhcchhhhhc--cCCCchhHhHH-HH
Confidence 9999999999999999999999999999999999999999999999999999999977642221 11111121100 01
Q ss_pred cchHHHHHHHHhhhccchhHHHHHHHhhcCcchHHHHHHHhHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHHHH
Q 043666 324 DSDLTFVLDRIFEGVCRPFKVRVEQVLQSQPSLIISYKLSNTLEFYSYTISDLLGRETALCNTLWVLKEAAQKTYFDILK 403 (680)
Q Consensus 324 ~~~i~~lld~i~~gl~rplk~RvEqvl~s~~~~i~~yki~nLL~fY~~t~~k~i~~~s~L~~tl~~L~~~a~~~f~~~l~ 403 (680)
+....++||.|++|||||||+||||+|++++++|++|+|.|||.||+.||+++||+++.+..+|.+|++.++++|+..++
T Consensus 331 ~~~dn~lld~i~~gvcrPlkvRvEqil~~e~~~Iilfki~nlL~FY~~~fs~~v~~ds~l~~~l~~L~d~s~q~~~~~l~ 410 (655)
T KOG3758|consen 331 GGIDNKLLDDILEGVCRPLKVRVEQILQAEKNAIILFKISNLLKFYRVTFSKLVQDDSALLNTLKELEDISKQRFIGYLE 410 (655)
T ss_pred hchhhhHHHHHHHHhcchhHHHHHHHHHcCcCceeehhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23446899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCchHHHHHHHHHHHHHHHhhcCCCCCCCCCCChHHHHHHhhhHHHHHHHHHHHhccC-CCCC
Q 043666 404 SRGEKLLRYPPLVAADLSPPTAVRDGVSVLLEIIETHNSTMVPVSRETPDFNLVISALLDPIIQMCEQAAEAHKS-KGAG 482 (680)
Q Consensus 404 ~~~~~l~~~~~~~~~DL~PP~~l~~~l~~L~eil~~~~~s~~~~~~~~~~f~~vl~~~ldPli~~~~~~a~~~~~-~~~~ 482 (680)
.|++++.++...||.||+||+||+++++.+.+|+++|+++.++.++++.+|++|+.+++||++++|+++|+..-| +.+
T Consensus 411 ~~~~~l~~~~l~p~~DLlPpp~v~~~l~ll~ei~~~~~a~~~~~d~~~~df~~l~s~vldpilq~c~~sae~~lp~~d~- 489 (655)
T KOG3758|consen 411 DHVKKLMRKELSPPSDLLPPPAVREYLNLLVEIFEIYEASHTAEDGEQLDFKLLLSCVLDPILQMCQKSAEAHLPTSDK- 489 (655)
T ss_pred HHHHHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCccc-
Confidence 999999999777777999999999999999999999999999999999999999999999999999999955433 210
Q ss_pred CCccccccCCCCCCccchhhhhhcCCCCCCCCCCCCCcchHHHHhhHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 043666 483 HSSRRRLSSDSGNVSKSSVDAILSNSSSTPSSQSNETPSKIFLINCLCAIQQPLIGHEVAAEYVKNLGSMIDNHLRILVD 562 (680)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iNcl~~i~s~L~~~~f~~~~~~~L~~~i~~~~~~L~~ 562 (680)
...||+||||++|+++|++|+|+++++++++.+|+++.++|+.
T Consensus 490 -------------------------------------~~~if~iNcL~~iks~l~~~e~~~~~~e~lq~~ie~~~d~L~t 532 (655)
T KOG3758|consen 490 -------------------------------------GSLIFMINCLDLIKSRLARYEFLDERVEMLQAKIEAYLDTLVT 532 (655)
T ss_pred -------------------------------------ccceehhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1249999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHhccccC-CCCcccCCCCCHHHHHHHHHHhHhhhhcCCCC--hhhhhhccChHHHHHHHHHHH
Q 043666 563 KEVDTILRRCGLLPKMRHFRSKEV-SLPLAEIEDTSPTSLSECLKAFFGLVLGSESS--LPEFELLQVPKLRSEACIQVA 639 (680)
Q Consensus 563 ~q~~~lL~~~GL~~~~~~~~~~~~-~~~ls~~p~~~~~~l~~~l~~f~~~L~s~~~a--l~~l~~L~sp~l~~~i~~~~~ 639 (680)
+|+++++++|||+++|+.+++..+ ++.++..|++.+..+.+++.+|+.|+ ..|+. +|++++|+||.+|++||++++
T Consensus 533 ~q~s~ll~~~GLs~~~q~~~~~~p~~~~ls~~~~l~s~~~~~~i~~fd~~l-~~~~~~~lpq~q~l~sp~~r~~i~kr~~ 611 (655)
T KOG3758|consen 533 LQVSFLLENTGLSDLYQKFNMITPEDSVLSLDPDLESALLDEAIVKFDMFL-HAPLNLTLPQLQQLTSPMVRDEICKRSA 611 (655)
T ss_pred HHHHHHHHHcChHHHHHHHHhcCcchhhhhccccccHHHHHHHHHHHHHHh-cccccccchHHHHHcCHHHHHHHHHHHH
Confidence 999999999999999999999854 44499999999999999999999998 45544 499999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCC-CcccCCCHHHHHHhhcC
Q 043666 640 RSLAEAYEQIYQAIMDPKNGHPDP-KSLARHPPDQIRTILGI 680 (680)
Q Consensus 640 ~~~~~~Y~~i~~~v~dp~n~y~~~-~~~l~~tp~qv~~lL~~ 680 (680)
..|+.+|+.||++|+||.|||++| .+++.|+||||.|++|+
T Consensus 612 ~~~~~aY~~i~~al~~~~ngy~dPve~ll~~~~dq~~tll~i 653 (655)
T KOG3758|consen 612 KKFVLAYEIIYKALINPYNGYKDPVESLLHFSPDQVDTLLGI 653 (655)
T ss_pred HHHHHHHHHHHHHHhCcCCCCCChHHHHhcCCHHHhcccccc
Confidence 999999999999999999999999 99999999999999985
No 3
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=99.87 E-value=5.3e-18 Score=192.25 Aligned_cols=409 Identities=15% Similarity=0.180 Sum_probs=321.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHH-------HHHHHHHHhcc
Q 043666 59 LDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQR-------QEIVSCFLRDY 131 (680)
Q Consensus 59 ~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K-------~~ll~~Fl~~F 131 (680)
.+.+++|-.-.+.+..++.++..+.+.++.|++.|...+.+.+.+..++..||++...+..| ++.|..|.+..
T Consensus 3 ~~si~dy~~e~~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i 82 (508)
T PF04129_consen 3 RESIQDYLKESENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDI 82 (508)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45678888889999999999999999999999999999999999999999999999988887 67799999999
Q ss_pred cCCHHHHHhccCCCCChhHHHHHHHHH-HHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 043666 132 QLSNEEINALRDEDLDESFFKALAHVQ-EIHANCKVLLRTHHQRAGLELMDMMAMYQEGAYERLCRWVQAECRKLGDTEN 210 (680)
Q Consensus 132 ~Ls~~E~~~L~~~~Vd~~FF~aL~rv~-~I~~~c~~LL~~~~q~aGleiMe~~s~~~e~A~erL~~w~q~e~~~l~~~~~ 210 (680)
+++|+-+..|++||||+.||..+.+.. ++...++.- ......|+.++.+...++..+|.+|+++|+....+.+ ..
T Consensus 83 ~ipP~lI~~I~~~~v~e~~~~~~~~~~~k~~~~~~~~-~~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI~~l---r~ 158 (508)
T PF04129_consen 83 VIPPDLIRSICEGPVNEQYIEELLELLKKKIFFSKDQ-SFKDSKAIKDVKPELEKLKNKAVERIRDFLLKKIKSL---RK 158 (508)
T ss_pred cCCHHHHHhHhcCCCCHHHHHHHHHHHHHHHHHHhhc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cC
Confidence 999999999999999999999754333 333333211 1356788999999999999999999999999999887 34
Q ss_pred ccch-HHHHH-------HHHHHhcC-chhHHHHHHHHHHHHHHHHHHH---HHHHHhc-------------C-------C
Q 043666 211 PEVG-ELLKT-------AVRCLKER-PVLFKYCAEEVANMRHNALFRR---FLSALTR-------------G-------G 258 (680)
Q Consensus 211 ~e~~-~~l~~-------al~~L~~r-p~lf~~~ld~~a~~R~~~L~~~---F~~aLt~-------------g-------~ 258 (680)
|..+ ..+|+ .+.+|.++ |.+..++.+.|+.++++..... |+.+|++ | +
T Consensus 159 ~~tn~q~iQ~~LLk~~~~~~FL~~~~~~~a~El~~~Yv~tM~~~Y~~~F~~Y~~~L~kl~~~~~~~~~dL~g~~~~~~~~ 238 (508)
T PF04129_consen 159 PKTNSQIIQQVLLKYKELFQFLKKHSPELAKELRQAYVETMSWYYSSYFKRYIRSLEKLQLRIIDSKDDLIGVEDSSKGG 238 (508)
T ss_pred CCCchHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcccccc
Confidence 4333 44443 38899977 9999999999999999998776 4555552 1 0
Q ss_pred ---C----------------------CCCCCCccccc--cCcchhhhhHH-HHHHH----HhhhHHHHHHhhcCCCCCCC
Q 043666 259 ---P----------------------GGLPRPIEVHA--HDPLRYVGDML-GWLHQ----ALASERELVLGLLDPDVGDT 306 (680)
Q Consensus 259 ---~----------------------~g~~rPIel~A--hDP~RYvgDmL-AwvHq----aiasE~Efl~sLF~~~~~~~ 306 (680)
. ...+.||..|+ .++.+|--..+ ..+|. .+.+|..|+..+|....
T Consensus 239 ~~s~~~~~~~~~~~Fslg~R~~iL~~~~~~p~i~~~~a~~~~~k~~~E~iFRS~~~~L~Dn~t~Ey~F~~~FF~~~~--- 315 (508)
T PF04129_consen 239 FFSSKSSLKNRSSVFSLGRRIDILNSELDAPIIVPQIAEDNSQKYPIEEIFRSLNKALIDNATSEYLFISEFFSGSG--- 315 (508)
T ss_pred ccCCCcccccchhhhhhhHHHHHHhhcccCCccccchhhcccccCCHHHHHHHHHHHHHHhhhHHHHHHHHHHcccc---
Confidence 0 01234555565 34567766665 88888 67899999999996531
Q ss_pred CcccccccccCCCCCCCcchHHHHHHHHhhhccchhHHHHHHHhhcCcchHHHHHHHhHHHHHHHHHHH-hhCCCchHHH
Q 043666 307 GLTASQFSKSQNGSGKTDSDLTFVLDRIFEGVCRPFKVRVEQVLQSQPSLIISYKLSNTLEFYSYTISD-LLGRETALCN 385 (680)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~i~~lld~i~~gl~rplk~RvEqvl~s~~~~i~~yki~nLL~fY~~t~~k-~i~~~s~L~~ 385 (680)
....++...||+..+.-+.-.+++.|.+..|++.++-+++|...|+..+.+ .+. .|..
T Consensus 316 ------------------~~~~~if~~If~~t~~~~~~~~~~~l~~~~D~iglll~Irl~~~~~~~~~~R~ip---~ld~ 374 (508)
T PF04129_consen 316 ------------------DAAEDIFNQIFEPTFSLLQEFTEQLLSNSYDAIGLLLCIRLNQRYQFEMQRRRIP---VLDS 374 (508)
T ss_pred ------------------cchHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCCCC---chHH
Confidence 122558999999888888889999999999999999999999999999988 564 7999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--CCCCCCCchHHHHHHHHHHHHHHHhhcCCCCCCCCCCChHHHHHHhhh
Q 043666 386 TLWVLKEAAQKTYFDILKSRGEKLLRYPPL--VAADLSPPTAVRDGVSVLLEIIETHNSTMVPVSRETPDFNLVISALLD 463 (680)
Q Consensus 386 tl~~L~~~a~~~f~~~l~~~~~~l~~~~~~--~~~DL~PP~~l~~~l~~L~eil~~~~~s~~~~~~~~~~f~~vl~~~ld 463 (680)
.+..+....|.+|...++.++.+++..... .+.|..|=...+++...+..|+..... . .+....+.+..+-+
T Consensus 375 y~~~~~~~LWprF~~i~d~nieSlk~~~~~~~~~~~~~PH~itrRyaef~~sll~L~~~--~----~~~~~~~~l~~L~~ 448 (508)
T PF04129_consen 375 YLNSLLMLLWPRFQKIMDANIESLKKADPKKLGSIDTRPHYITRRYAEFLSSLLKLSSE--H----PDEQLEPSLNRLRR 448 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCccCChHHHHHHHHHHHHHHHHhcc--C----chhhHHHHHHHHHH
Confidence 999999999999999999999999876433 346788866666666666666655332 1 12225556666666
Q ss_pred HHHHHHHHHHHhccCCCCCCCccccccCCCCCCccchhhhhhcCCCCCCCCCCCCCcchHHHHhhHHHHhhccccch
Q 043666 464 PIIQMCEQAAEAHKSKGAGHSSRRRLSSDSGNVSKSSVDAILSNSSSTPSSQSNETPSKIFLINCLCAIQQPLIGHE 540 (680)
Q Consensus 464 Pli~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iNcl~~i~s~L~~~~ 540 (680)
-+.....++++.++.. .++.||++|-.++|.+.|+--.
T Consensus 449 ~~~~ll~~~s~~~~~~---------------------------------------k~~~iFLiNNY~lIl~iL~~~~ 486 (508)
T PF04129_consen 449 EVEDLLTRLSKEFKDR---------------------------------------KEREIFLINNYDLILSILSERT 486 (508)
T ss_pred HHHHHHHHHHHhcccc---------------------------------------cccceehHHHHHHHHHHHHhcc
Confidence 6666666666666321 2467999999999999998876
No 4
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.82 E-value=1.7e-15 Score=166.68 Aligned_cols=456 Identities=15% Similarity=0.153 Sum_probs=339.1
Q ss_pred HHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHH-
Q 043666 42 ARRNLRSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQR- 120 (680)
Q Consensus 42 aRr~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K- 120 (680)
.=|....+||.++-+.+..-+++|-.-.+.+..++.++..|+...++|.+.|.+++...+.+..++..|++++..+..+
T Consensus 47 ~lr~y~~~ve~~l~k~e~~Siqdyi~es~~~~~lhNqi~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~L 126 (683)
T KOG1961|consen 47 DLREYSKQVENELRKAERKSIQDYIKESENLASLHNQIRACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLRL 126 (683)
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHH
Confidence 3467788999999999999999999999999999999999999999999999999999999999999999998877665
Q ss_pred ------HHHHHHHHhcccCCHHHHHhccCCCCCh-hHHHHHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHH
Q 043666 121 ------QEIVSCFLRDYQLSNEEINALRDEDLDE-SFFKALAHVQEIHANCKVLLRTHHQRAGLELMDMMAMYQEGAYER 193 (680)
Q Consensus 121 ------~~ll~~Fl~~F~Ls~~E~~~L~~~~Vd~-~FF~aL~rv~~I~~~c~~LL~~~~q~aGleiMe~~s~~~e~A~er 193 (680)
+.-|..|.+.+.++|+-+..+.+||||+ +|-++|..+..--+-...=.+..+..+-.+++.-..++..+|.+|
T Consensus 127 ~Nrq~v~s~Ls~fVdd~iVpp~lI~~I~~g~vne~~f~~~LeeL~~Kl~~v~~dq~~k~a~a~~Dv~~lLdkLR~KAi~k 206 (683)
T KOG1961|consen 127 ENRQAVESKLSQFVDDLIVPPELIKTIVDGDVNEPEFLEALEELSHKLKLVELDQSNKDAKALKDVEPLLDKLRLKAIEK 206 (683)
T ss_pred HhHHHHHHHHHHHhccccCCHHHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 5568999999999999999999999999 898888766543332221112345566789999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCccchHHHHHH-------HHHHhcC-chhHHHHHHHHHHHHHHHHHHH---HHHHHhc------
Q 043666 194 LCRWVQAECRKLGDTENPEVGELLKTA-------VRCLKER-PVLFKYCAEEVANMRHNALFRR---FLSALTR------ 256 (680)
Q Consensus 194 L~~w~q~e~~~l~~~~~~e~~~~l~~a-------l~~L~~r-p~lf~~~ld~~a~~R~~~L~~~---F~~aLt~------ 256 (680)
+++|+......+ ....++..+..|-+ +.+|.++ -.++.+..++|..++.+....- |+..||.
T Consensus 207 ir~~IlqkI~~f-Rkp~tn~qi~~Q~~LLK~k~~y~FL~~n~r~~A~Elr~aYIdTM~k~y~~yF~sY~~~L~klq~~~i 285 (683)
T KOG1961|consen 207 IREFILQKIKAF-RKPMTNYQIPQQHALLKYKFFYEFLLENNRELALELRDAYIDTMNKIYLSYFKSYIRRLTKLQFEEI 285 (683)
T ss_pred HHHHHHHHHHHH-hCCCCCcchHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988776 22223322332222 6778766 8999999999999999998765 4555551
Q ss_pred -------C-----CCC---------------------C--------CCCCcccc-ccCc-chhhhhHHHHHHHHh----h
Q 043666 257 -------G-----GPG---------------------G--------LPRPIEVH-AHDP-LRYVGDMLGWLHQAL----A 289 (680)
Q Consensus 257 -------g-----~~~---------------------g--------~~rPIel~-AhDP-~RYvgDmLAwvHqai----a 289 (680)
| ++| | .--||.++ +..- .-|++=.+...|-++ .
T Consensus 286 at~~D~~Gi~fn~skGl~~~fsk~~~~l~~r~tvF~ig~R~~Iltq~d~p~lvphiae~~k~~~E~lfrs~~~al~dn~t 365 (683)
T KOG1961|consen 286 ATKEDLMGIEFNASKGLFFFFSKLPEPLKNRSTVFTIGKRLQILTQLDAPILVPHIAEANKYYIEALFRSLHLALLDNAT 365 (683)
T ss_pred hccccccccccccCccHHHHhccCcchhhcccceeehhhhhhhhhhccccchhhhHHhcCCCcHHHHHHHHHHHHHhcch
Confidence 2 111 0 01344442 2222 234555556666644 5
Q ss_pred hHHHHHHhhcCCCCCCCCcccccccccCCCCCCCcchHHHHHHHHhhhccchhHHHHHHHhhcCcchHHHHHHHhHHHHH
Q 043666 290 SERELVLGLLDPDVGDTGLTASQFSKSQNGSGKTDSDLTFVLDRIFEGVCRPFKVRVEQVLQSQPSLIISYKLSNTLEFY 369 (680)
Q Consensus 290 sE~Efl~sLF~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lld~i~~gl~rplk~RvEqvl~s~~~~i~~yki~nLL~fY 369 (680)
+|.-|++-.|.... ..-.+++..||++--.-..--++++|+.+.|+|..+..+++..-|
T Consensus 366 sEYlFl~efF~~~g---------------------d~~~~if~aIf~~tls~~~k~~~~~Is~~~DaIgvll~Iri~~k~ 424 (683)
T KOG1961|consen 366 SEYLFLEEFFAVSG---------------------DQAEDIFYAIFGKTLSVILKYLESLISDCYDAIGVLLCIRIIHKL 424 (683)
T ss_pred hHHHHHHHHHhhcC---------------------chHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999998883321 012458999999433333445679999999999999999999999
Q ss_pred HHHHHH-hhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCCCCCCCchHHHHHHHHHH-HHHHHhhcCCC
Q 043666 370 SYTISD-LLGRETALCNTLWVLKEAAQKTYFDILKSRGEKLLRYPP--LVAADLSPPTAVRDGVSVLL-EIIETHNSTMV 445 (680)
Q Consensus 370 ~~t~~k-~i~~~s~L~~tl~~L~~~a~~~f~~~l~~~~~~l~~~~~--~~~~DL~PP~~l~~~l~~L~-eil~~~~~s~~ 445 (680)
+.++.+ .|. .+...++.+.-.-|.+|.-.++-|..+++.-.. .|..+..-|.+++.-+..+. .++-.-.+.
T Consensus 425 ql~~~rR~VP---~ld~y~n~v~~~LWPRFq~V~d~h~eSlR~~di~~~~~~~d~rPHyitrRyAEf~ss~~~l~v~~-- 499 (683)
T KOG1961|consen 425 QLIAARRRVP---ALDSYWNSVLIFLWPRFQLVMDMHCESLRKADITTLWEKLDTRPHYITRRYAEFLSSFLMLNVTY-- 499 (683)
T ss_pred HHHHHhcCCc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcccccCCCchHHHHHHHHHHHHHHHHHHhc--
Confidence 999999 664 799999999999999999999999999987643 23324444555554444333 333211111
Q ss_pred CCCCCCCChHHHHHHhhhHHHHHHHHHHHhccCCCCCCCccccccCCCCCCccchhhhhhcCCCCCCCCCCCCCcchHHH
Q 043666 446 PVSRETPDFNLVISALLDPIIQMCEQAAEAHKSKGAGHSSRRRLSSDSGNVSKSSVDAILSNSSSTPSSQSNETPSKIFL 525 (680)
Q Consensus 446 ~~~~~~~~f~~vl~~~ldPli~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 525 (680)
+.+.+...++..+.+-...+..++++..+.+ .+..+|+
T Consensus 500 ---~~~~~~~~ll~~l~~~ve~fl~rmak~~~~~---------------------------------------K~q~vFL 537 (683)
T KOG1961|consen 500 ---GNEQDVERLLERLQMEVESFLLRMAKLFPTR---------------------------------------KQQLVFL 537 (683)
T ss_pred ---cccchHHHHHHHHHHHHHHHHHHHHHhcCCc---------------------------------------ccceeee
Confidence 1234477788888888888888888887432 2477999
Q ss_pred HhhHHHHhhccccchh-----hHHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 526 INCLCAIQQPLIGHEV-----AAEYVKNLGSMIDNHLRILVDKEVD 566 (680)
Q Consensus 526 iNcl~~i~s~L~~~~f-----~~~~~~~L~~~i~~~~~~L~~~q~~ 566 (680)
||-.++|.+.|+.-+- ....-+.+++.++..+++|...+.+
T Consensus 538 iNNYdlil~vL~e~~~~~~k~~~~f~e~ln~~~~~fveell~~hf~ 583 (683)
T KOG1961|consen 538 INNYDLILGVLMEAEPDLSKEQEHFQELLNSNTSNFVEELLVPHFG 583 (683)
T ss_pred eccHHHHHHHHHhhccccchHHHHHHHHHHhhHHHHHHHhccCCcC
Confidence 9999999999988763 2344677788888888888776654
No 5
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=98.96 E-value=0.00021 Score=85.13 Aligned_cols=360 Identities=13% Similarity=0.158 Sum_probs=243.5
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHH----
Q 043666 45 NLRSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQR---- 120 (680)
Q Consensus 45 ~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K---- 120 (680)
.+...|.+++-......+..+-....+...+...++.....|++|...|.........+-++++....+.+-++++
T Consensus 5 ~~~~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~ 84 (701)
T PF09763_consen 5 AFEERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQ 84 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHH
Confidence 4567788889999999999999999999999999999999999999999998888888888888777776666665
Q ss_pred ---HHHHHHHHhcccCCHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHhh----c------ccC-----cchHHHHHHH
Q 043666 121 ---QEIVSCFLRDYQLSNEEINALRDEDLDESFFKALAHVQEIHANCKVLL----R------THH-----QRAGLELMDM 182 (680)
Q Consensus 121 ---~~ll~~Fl~~F~Ls~~E~~~L~~~~Vd~~FF~aL~rv~~I~~~c~~LL----~------~~~-----q~aGleiMe~ 182 (680)
.+-|..++++..|++....+|+++++++.= .+..+.+.+..|- . ..+ .+|=.+=.+.
T Consensus 85 k~L~~eL~~Ll~~l~i~~~~l~~L~~~~l~~~~-----~l~~~e~a~~~L~~Al~~i~~~~~~~~~~~~~M~Av~er~~~ 159 (701)
T PF09763_consen 85 KLLLNELENLLDTLSIPEEHLEALRNASLSSPD-----GLEKIEEAAEALYKALKAIRPDLEKLDPGLGQMRAVKERREE 159 (701)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhcCCCCCcc-----cHHHHHHHHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHH
Confidence 455899999999999999999999986431 1222222222222 1 111 2333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCC-----C--------Cccch-HHHHHH------HHHHhcC-chhHHHHHHHHHHH
Q 043666 183 MAMYQEGAYERLCRWVQAECRKLGDT-----E--------NPEVG-ELLKTA------VRCLKER-PVLFKYCAEEVANM 241 (680)
Q Consensus 183 ~s~~~e~A~erL~~w~q~e~~~l~~~-----~--------~~e~~-~~l~~a------l~~L~~r-p~lf~~~ld~~a~~ 241 (680)
..+....=.+|+.+|+...|+.+... + .+... +..+.- +.++++- |.-|..++..|+.+
T Consensus 160 ~~~~~~~F~~r~~~~l~~~F~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~L~~ys~Li~~lK~~d~~~y~~L~~~Y~~~ 239 (701)
T PF09763_consen 160 YEKVSDKFCKRLSRFLNNMFKNLVDELLSDKDSFSQSGKLSLPKHSSLHNELLPYSGLILWLKEVDPESYQALIKAYNSS 239 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCChHHHHHHHHHHHhHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 45556667888899998888554211 1 11111 222222 6778866 99999999999999
Q ss_pred HHHHHHHHHHHHHhc---------C--------CCC-----------C------CCCCccc-------------cccCcc
Q 043666 242 RHNALFRRFLSALTR---------G--------GPG-----------G------LPRPIEV-------------HAHDPL 274 (680)
Q Consensus 242 R~~~L~~~F~~aLt~---------g--------~~~-----------g------~~rPIel-------------~AhDP~ 274 (680)
.+++.-+.|..-+.. + +++ + .++|... ....|-
T Consensus 240 ~~~ly~~e~~~~~~~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 319 (701)
T PF09763_consen 240 MSKLYEREIRDFFEALKKSISKASGDENDESLFTSSSPELSTEWISLRKSRKLTLDRSKTLRNIDMWAPSPKSSGKLRFD 319 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcchhhhhcccccccchhcccccccccccccCCCCccchhcccccCCCCcccccCHH
Confidence 999988875544431 0 000 0 1233322 113566
Q ss_pred hhhhhHHHHHHHHhhhHHHHHHhhcCCCCC---------CCCcccccccc-cCCC-----CCCCcchHHHHHHHHhhhcc
Q 043666 275 RYVGDMLGWLHQALASERELVLGLLDPDVG---------DTGLTASQFSK-SQNG-----SGKTDSDLTFVLDRIFEGVC 339 (680)
Q Consensus 275 RYvgDmLAwvHqaiasE~Efl~sLF~~~~~---------~~~~~~~~~~~-~~~~-----~~~~~~~i~~lld~i~~gl~ 339 (680)
.-++.+|.-+=..+..|-.|+..+|..+.. ...+...+... .... +......+..+|+.||+++-
T Consensus 320 ~a~~~~L~el~pl~~~EQ~Fi~~FFhl~s~~~~~f~~~v~~~~~~~r~~~~~~~~~~~~~d~~~~~~~~~~m~~iF~~l~ 399 (701)
T PF09763_consen 320 EAFEQALEELEPLCIREQNFIIDFFHLSSNSTLDFADYVKQSSPSERRSSDLSSSKPMEPDRESAKDVRQMMSEIFGFLE 399 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCChhhHHhcCCcccccccccccccccCcchhHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999965421 00000001000 0000 01124577889999999999
Q ss_pred chhHHHHHHHhhcCcchHHHHHHHhHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 043666 340 RPFKVRVEQVLQSQPSLIISYKLSNTLEFYSYTISDLLGRETALCNTLWVLKEAAQKTYFDILKSRGEKLLRYP 413 (680)
Q Consensus 340 rplk~RvEqvl~s~~~~i~~yki~nLL~fY~~t~~k~i~~~s~L~~tl~~L~~~a~~~f~~~l~~~~~~l~~~~ 413 (680)
.-|..-|+-+.+.. |..+--|.-.|+-|...... .+.+-|..+|..+....++.|...++.++..+.+..
T Consensus 400 ~~l~~~v~~~~~~d--p~~~~~~l~~le~~~~~~~~--s~~~fl~~~L~~l~~~~k~~f~~fv~~Qi~~ie~~k 469 (701)
T PF09763_consen 400 NELQSFVDWAEKND--PLQCVSMLVYLERYIKSLEQ--SNQSFLSNLLQKLQVRLKRLFDKFVDEQIKSIEETK 469 (701)
T ss_pred HHHHHHHHHHHccC--chhHHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999996544 44444444445555444433 233368999999999999999999999999998753
No 6
>PF03081 Exo70: Exo70 exocyst complex subunit; InterPro: IPR004140 The Exo70 protein forms one subunit of the exocyst complex. First discovered in Saccharomyces cerevisiae [], Exo70 and other exocyst proteins have been observed in several other eukaryotes, including humans. In S. cerevisiae, the exocyst complex is involved in the late stages of exocytosis, and is localized at the tip of the bud, the major site of exocytosis in yeast []. Exo70 interacts with the Rho3 GTPase []. This interaction mediates one of the three known functions of Rho3 in cell polarity: vesicle docking and fusion with the plasma membrane (the other two functions are regulation of actin polarity and transport of exocytic vesicles from the mother cell to the bud) []. In humans, the functions of Exo70 and the exocyst complex are less well characterised: Exo70 is expressed in several tissues and is thought to also be involved in exocytosis [].; GO: 0006887 exocytosis, 0000145 exocyst; PDB: 2PFV_A 2B7M_B 2B1E_A 2PFT_A.
Probab=98.51 E-value=7.1e-06 Score=89.91 Aligned_cols=319 Identities=17% Similarity=0.172 Sum_probs=178.0
Q ss_pred HHHHHHHHhhhHHHHHHhhcCCCCCCCCcccccccccCCCCCCCcchHHHHHHHHhhhccchhHHHHHHHh---hcCcch
Q 043666 280 MLGWLHQALASERELVLGLLDPDVGDTGLTASQFSKSQNGSGKTDSDLTFVLDRIFEGVCRPFKVRVEQVL---QSQPSL 356 (680)
Q Consensus 280 mLAwvHqaiasE~Efl~sLF~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lld~i~~gl~rplk~RvEqvl---~s~~~~ 356 (680)
|-.-++..+.+|+.++..+|..... .-..++.+++...-..+-...+.+. .....+
T Consensus 8 ~~~~~~~l~~~E~~L~~~vf~~~~~---------------------~~~~~f~~i~~~~~~~ll~~~~~v~~~~~~~~~~ 66 (371)
T PF03081_consen 8 YKVALKKLFQSERRLCDQVFPESSS---------------------IADECFAEIAKPPLLQLLNFADAVASVRNSQRSP 66 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCT---------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcc---------------------cHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCh
Confidence 3444666889999999999965420 1244666666655455555666666 344444
Q ss_pred HHHHHHHhHHHHHHHHHHH------hhCC-Cc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCch
Q 043666 357 IISYKLSNTLEFYSYTISD------LLGR-ET-----ALCNTLWVLKEAAQKTYFDILKSRGEKLLRYPPLVAADLSPPT 424 (680)
Q Consensus 357 i~~yki~nLL~fY~~t~~k------~i~~-~s-----~L~~tl~~L~~~a~~~f~~~l~~~~~~l~~~~~~~~~DL~PP~ 424 (680)
. +++.+|+.|...-.- .+.. .+ .+...++.|.+.+++.|.+... .+...-.....+|.|=.-.+
T Consensus 67 ~---~lf~ll~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~~~-~i~~~~~~~~~~p~dg~Vh~ 142 (371)
T PF03081_consen 67 E---KLFELLDMYEALSELLPDLDSLFSGESCESIRQEFDELLKKLREAIRKILEEFEE-SIKNDSDSSSSVPSDGGVHP 142 (371)
T ss_dssp T---CCCCHHHHHHHHHHHHCCCHHCTCC-S-HHHHTHHHHHHHHHHHHHCHHHHHHHH-HHHHHHTTCGCS-TTS---H
T ss_pred H---HHHHHHHHHHHHHHHhHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhccccccCCCCCCcch
Confidence 4 455556666443221 2211 11 3677788888888877765553 22221123344556655566
Q ss_pred HHHHHHHHHHHHHHHhhc---CCCCCCC------------------CCCChHHHHHHhhhHHHHHHHHHHHhccCCCCCC
Q 043666 425 AVRDGVSVLLEIIETHNS---TMVPVSR------------------ETPDFNLVISALLDPIIQMCEQAAEAHKSKGAGH 483 (680)
Q Consensus 425 ~l~~~l~~L~eil~~~~~---s~~~~~~------------------~~~~f~~vl~~~ldPli~~~~~~a~~~~~~~~~~ 483 (680)
....+++.|+-+.+-.++ -+..... ....|...+..+++=+..+.+.-+...+.+
T Consensus 143 lT~~vm~yl~~L~~y~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~ks~~y~d~---- 218 (371)
T PF03081_consen 143 LTSYVMNYLKRLAEYRDTLESILQSDGDGNWLSESGPPSESSSSTDSQSSLSSYIADIISALESNLEAKSKSYKDP---- 218 (371)
T ss_dssp HHHHHHHHHHHHHCTHHHHHHCCCTT-GGGGS-SS--GGGS---CCHHHHHHHHHHHHHHHHHHHHHHHHCCHCTH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCccchHHHHHHHHHHHHHHHHHHHHhccccH----
Confidence 667777777777642221 1111110 112333444444444444444444333211
Q ss_pred CccccccCCCCCCccchhhhhhcCCCCCCCCCCCCCcchHHHHhhHHHHhhccccch----hhHHHHHHHHHHHHHHHHH
Q 043666 484 SSRRRLSSDSGNVSKSSVDAILSNSSSTPSSQSNETPSKIFLINCLCAIQQPLIGHE----VAAEYVKNLGSMIDNHLRI 559 (680)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iNcl~~i~s~L~~~~----f~~~~~~~L~~~i~~~~~~ 559 (680)
.-..||++|-+.+|...+..-+ ...++...+..+++.++..
T Consensus 219 -----------------------------------~l~~iFLlNN~~yI~~~~~~s~l~~~lg~~~~~~~~~~~~~~~~~ 263 (371)
T PF03081_consen 219 -----------------------------------ALRYIFLLNNYHYILKKLKRSELKDLLGDDWEQRLSSKIEQYIKS 263 (371)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHCCCCTSHHHHCCTTCHHHHHHHHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHhhhcchhhhcccHHHHHHHHHHHHHHHH
Confidence 1278999999999999998853 2235555555555555544
Q ss_pred HHHHHHHHHHHhcCChHHHHHhccccCCCCcccCCCCCHHHHHHHHHHhHhhhhcCCCCh---hhhhhccChHHHHHHHH
Q 043666 560 LVDKEVDTILRRCGLLPKMRHFRSKEVSLPLAEIEDTSPTSLSECLKAFFGLVLGSESSL---PEFELLQVPKLRSEACI 636 (680)
Q Consensus 560 L~~~q~~~lL~~~GL~~~~~~~~~~~~~~~ls~~p~~~~~~l~~~l~~f~~~L~s~~~al---~~l~~L~sp~l~~~i~~ 636 (680)
-.+.= -.++...+..- ...+-...+..+...+++.++.|...+- -+ -..-.+-+|.+|+.++.
T Consensus 264 Y~~~s---------W~~v~~~L~~~-~~~~~~~~~~~~~~~~ke~f~~Fn~~fe----e~~~~q~~~~vpD~~LR~~Lr~ 329 (371)
T PF03081_consen 264 YLRSS---------WGPVLSCLSDD-SSSSGGKLSSKERELLKEKFKKFNSAFE----EIYKAQKTWKVPDPELREELRR 329 (371)
T ss_dssp HHCHH---------HHHHHCTCCHH-CC-T-SSS-HHHHHHHHHHHHHHHHHHH----HHHHHHTT---S-HHHHHHHHH
T ss_pred HHHHH---------HHHHHHHHhhh-hccccCCCCCccHHHHHHHHHHHHHHHH----HHHHcCcceecCCHHHHHHHHH
Confidence 32221 12223333221 1111122334556678888888876531 11 11226789999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCcccCCCHHHHHHhhc
Q 043666 637 QVARSLAEAYEQIYQAIMDPKNGHPDPKSLARHPPDQIRTILG 679 (680)
Q Consensus 637 ~~~~~~~~~Y~~i~~~v~dp~n~y~~~~~~l~~tp~qv~~lL~ 679 (680)
.+.+.+.-+|...|++..+... +++--+++||++|..+|+
T Consensus 330 ~i~~~v~p~Y~~F~~~~~~~~~---~~~Kyikyt~~~le~~l~ 369 (371)
T PF03081_consen 330 EIKEKVVPAYRRFYERYRNSQF---NPEKYIKYTPEDLENMLN 369 (371)
T ss_dssp HHHHHHHHHHHHHHHHCCCCSS---SHCCC-SS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccc---CCCCCCccCHHHHHHHHH
Confidence 9999999999999999966554 556679999999999874
No 7
>KOG2344 consensus Exocyst component protein and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.083 Score=62.09 Aligned_cols=141 Identities=21% Similarity=0.253 Sum_probs=91.3
Q ss_pred chHHHHhhHHHHhhccccchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCChHHHHHhccccCCCCcccCCCCCHH
Q 043666 521 SKIFLINCLCAIQQPLIGHEVAAEYVKNLGSM-IDNHLRILVDKEVDTILRRCGLLPKMRHFRSKEVSLPLAEIEDTSPT 599 (680)
Q Consensus 521 ~~i~~iNcl~~i~s~L~~~~f~~~~~~~L~~~-i~~~~~~L~~~q~~~lL~~~GL~~~~~~~~~~~~~~~ls~~p~~~~~ 599 (680)
..+|+.|-+.+|-.++..- +-...+.+. +..|.+.+-.....+..... +.+...|...+ .+..+..+.+
T Consensus 462 ~~lFlmNN~~yiv~kvkss----~L~~llGd~wl~kh~~~~~qy~~~Y~r~sW--~~vl~~L~~~~----s~~~~~~~~~ 531 (623)
T KOG2344|consen 462 SYLFLMNNLHYIVQKVKSS----ELRLLLGDDWLRKHEEKLRQYATSYERESW--GKVLSLLTDEG----SSSGGKKSKE 531 (623)
T ss_pred HHHHHHhhHHHHHHHHhcc----hHHHHhchHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhccc----cccccccCHH
Confidence 6699999999999988841 112222222 24455554444444333232 34444443321 2222248899
Q ss_pred HHHHHHHHhHhhhhcCCCChhhhh------hccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccCCCHHH
Q 043666 600 SLSECLKAFFGLVLGSESSLPEFE------LLQVPKLRSEACIQVARSLAEAYEQIYQAIMDPKNGHPDPKSLARHPPDQ 673 (680)
Q Consensus 600 ~l~~~l~~f~~~L~s~~~al~~l~------~L~sp~l~~~i~~~~~~~~~~~Y~~i~~~v~dp~n~y~~~~~~l~~tp~q 673 (680)
.+++-++.|-.- +.++- .+.+|+||++++....+.+.-+|...|++..+-- .-.+++-..++|||.
T Consensus 532 ~~Kerfk~FN~~-------FeEv~k~Qs~wvV~D~~Lr~eLk~si~~~v~P~Yr~F~~r~~~~~-~~k~~~kyikYtped 603 (623)
T KOG2344|consen 532 VLKERFKLFNEQ-------FEEVYKKQSQWVVPDPKLREELKISISEKVVPAYRSFYGRYRNSV-SGKNPEKYIKYTPED 603 (623)
T ss_pred HHHHHHHHHHHH-------HHHHHHhhCceecccHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCCCCcccccCHHH
Confidence 999999998653 23332 4679999999999999999999999999985421 123444567899999
Q ss_pred HHHhhc
Q 043666 674 IRTILG 679 (680)
Q Consensus 674 v~~lL~ 679 (680)
|...|.
T Consensus 604 lE~~L~ 609 (623)
T KOG2344|consen 604 LENYLS 609 (623)
T ss_pred HHHHHH
Confidence 998763
No 8
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=96.40 E-value=3.6 Score=49.91 Aligned_cols=266 Identities=14% Similarity=0.145 Sum_probs=173.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Q 043666 56 SINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEIVSCFLRDYQLSN 135 (680)
Q Consensus 56 ~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl~~F~Ls~ 135 (680)
+...+.+..-=.+.+.+++|+.++..|......|++.+.....+|+.-+....+|..=+..++.=+..|..--.==+|..
T Consensus 56 ~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~ 135 (766)
T PF10191_consen 56 ETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSA 135 (766)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444555555677788888888888999999999998888888887777777776666666666666655444445666
Q ss_pred HHHHhccCCCCChhHHHHHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhcCCCCccch
Q 043666 136 EEINALRDEDLDESFFKALAHVQEIHANCKVLLRTHHQRAGLELMDMMAMYQEGAYER-LCRWVQAECRKLGDTENPEVG 214 (680)
Q Consensus 136 ~E~~~L~~~~Vd~~FF~aL~rv~~I~~~c~~LL~~~~q~aGleiMe~~s~~~e~A~er-L~~w~q~e~~~l~~~~~~e~~ 214 (680)
+=.+.+.+|++. .+=+|+..++.--.+|-..++..-+...|+.....+|....- |..-++ + .+.+..
T Consensus 136 ~v~~~~~~~d~~----~~a~~l~~m~~sL~~l~~~pd~~~r~~~le~l~nrLEa~vsp~Lv~al~----~----~~~~~~ 203 (766)
T PF10191_consen 136 EVDDLFESGDIA----KIADRLAEMQRSLAVLQDVPDYEERRQQLEALKNRLEALVSPQLVQALN----S----RDVDAA 203 (766)
T ss_pred HHHHHHhcCCHH----HHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHH----h----cCHHHH
Confidence 666677776554 688888888888888766666677788888886666665443 222221 1 112222
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccccCcchhhhhHHHHHHHHhhhHHHH
Q 043666 215 ELLKTAVRCLKERPVLFKYCAEEVANMRHNALFRRFLSALTRGGPGGLPRPIEVHAHDPLRYVGDMLGWLHQALASEREL 294 (680)
Q Consensus 215 ~~l~~al~~L~~rp~lf~~~ld~~a~~R~~~L~~~F~~aLt~g~~~g~~rPIel~AhDP~RYvgDmLAwvHqaiasE~Ef 294 (680)
..+.+-+..+ .-...+...|..+|...|.+..-...+..+. .+-+--+ | .|.+++|+.+| .|...
T Consensus 204 ~~~~~if~~i----~R~~~l~~~Y~~~r~~~l~~~W~~~~~~~~~--~~~~~~L----~-~fyd~ll~~l~----~E~~w 268 (766)
T PF10191_consen 204 KEYVKIFSSI----GREPQLEQYYCKCRKAPLQRLWQEYCQSDQS--QSFAEWL----P-SFYDELLSLLH----QELKW 268 (766)
T ss_pred HHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHHHHHHhhhccc--hhHHHHH----H-HHHHHHHHHHH----HHHHH
Confidence 2233333333 3345567889999999998887666554422 0100001 1 46666666666 58889
Q ss_pred HHhhcCCCCCCCCcccccccccCCCCCCCcchHHHHHHHHhhhccchhHHHHHHHhhcCcchHHHHHHHhHHHHHHHH
Q 043666 295 VLGLLDPDVGDTGLTASQFSKSQNGSGKTDSDLTFVLDRIFEGVCRPFKVRVEQVLQSQPSLIISYKLSNTLEFYSYT 372 (680)
Q Consensus 295 l~sLF~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lld~i~~gl~rplk~RvEqvl~s~~~~i~~yki~nLL~fY~~t 372 (680)
+..+|..+. . .+..++-..+..|..+++.|+.+.+....+.. ++..|+.+|+.+
T Consensus 269 ~~~vF~~~~--------------------~-~~~~ll~~~L~~L~PS~~~~l~~al~~~~~~~---~L~~L~~l~~~t 322 (766)
T PF10191_consen 269 CSQVFPDES--------------------P-VLPKLLAETLSALQPSFPSRLSSALKRAGPET---KLETLIELYQAT 322 (766)
T ss_pred HHHHcCCch--------------------h-HHHHHHHHHHHhcCccHHHHHHHHHhhcCchh---hHHHHHHHHHHH
Confidence 999996542 1 45778999999999999999999996543331 144555555443
No 9
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=93.94 E-value=5.6 Score=38.76 Aligned_cols=141 Identities=16% Similarity=0.198 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHh
Q 043666 61 FLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEIVSCFLRDYQLSNEEINA 140 (680)
Q Consensus 61 ~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl~~F~Ls~~E~~~ 140 (680)
+++..+...+..+.+-.+++++....+.|..........|..+-+..+.|-.+...++...+-+...+..|.==+.=...
T Consensus 5 y~~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~ 84 (157)
T PF04136_consen 5 YLDYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRR 84 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHH
Confidence 34444444556666666677777777777777777777888888888888888888888888899999998644444444
Q ss_pred ccC---CCCChhHHHHHHHHHHHHHHHHHhhcccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043666 141 LRD---EDLDESFFKALAHVQEIHANCKVLLRTHH-QRAGLELMDMMAMYQEGAYERLCRWVQAECRKL 205 (680)
Q Consensus 141 L~~---~~Vd~~FF~aL~rv~~I~~~c~~LL~~~~-q~aGleiMe~~s~~~e~A~erL~~w~q~e~~~l 205 (680)
|.+ .-.++.|...|.|+. +|-.-|..+. -+=+--..-+..+.+-+|..=|..|+.+.++.+
T Consensus 85 Ln~p~~sV~~~~F~~~L~~LD----~cl~Fl~~h~~fkea~~Y~~rf~q~ltRAl~lIk~y~~~~l~~~ 149 (157)
T PF04136_consen 85 LNSPGSSVNSDSFKPMLSRLD----ECLEFLEEHPNFKEAEVYLIRFRQCLTRALTLIKNYVVNTLRSA 149 (157)
T ss_pred HcCCCCcccchHHHHHHHHHH----HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 224688988888875 4655554432 233446777888889999999999999988875
No 10
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=90.14 E-value=38 Score=39.80 Aligned_cols=128 Identities=16% Similarity=0.238 Sum_probs=82.2
Q ss_pred ChHHHHHHHHhhhhcc--CCCHHHHHhhHHHHHH---HHHHhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 21 TPDLLASLKTLSTFYE--ENTPHARRNLRSTIEK---RALSINLDFL---QASSAAQQALDQVEEEVNSLAECCDRIEKA 92 (680)
Q Consensus 21 ~~~~~~aL~~Ls~~~~--~nt~~aRr~LR~~iE~---~~l~~n~~~L---~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~ 92 (680)
+..+..-++.|+.-|. ++.....|.+..+|+. +.......+- ..|+.+.+.++.+...++.+......+.+.
T Consensus 326 ~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~ 405 (569)
T PRK04778 326 NKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEM 405 (569)
T ss_pred HHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888877 6777777777666554 2221211111 248888888888888888888888888888
Q ss_pred HhhhhhhhcchHHHHHHHHHHHHHHHHHH------HHHHHHHhcccCCHHHHHhcc----CCCCCh
Q 043666 93 LNSCNATTGNIIETTERLKRDLDVNTQRQ------EIVSCFLRDYQLSNEEINALR----DEDLDE 148 (680)
Q Consensus 93 L~~~~~~t~~ll~e~~~L~~~~~~l~~K~------~ll~~Fl~~F~Ls~~E~~~L~----~~~Vd~ 148 (680)
+.+....-...-+....++.+...+..+= .+=..|++.|.-...++..|. .||||.
T Consensus 406 l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm 471 (569)
T PRK04778 406 LQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINM 471 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 87766666666666666666655333220 122456666666666666664 377774
No 11
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=84.74 E-value=18 Score=34.01 Aligned_cols=81 Identities=11% Similarity=0.266 Sum_probs=66.1
Q ss_pred HHHhhHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHH
Q 043666 42 ARRNLRST---IEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNT 118 (680)
Q Consensus 42 aRr~LR~~---iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~ 118 (680)
+||+|+.. |-+.+-.....+-..=+.+..+|+++...++++.+.-..|++.+...+.++..+-.+++.++.--..++
T Consensus 37 Trr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le 116 (126)
T PF07889_consen 37 TRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLE 116 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 78888654 456677777777777778889999999999999999999999999988888888888888887777777
Q ss_pred HHHH
Q 043666 119 QRQE 122 (680)
Q Consensus 119 ~K~~ 122 (680)
-|=.
T Consensus 117 ~ki~ 120 (126)
T PF07889_consen 117 GKID 120 (126)
T ss_pred HHHH
Confidence 6643
No 12
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=81.52 E-value=79 Score=33.75 Aligned_cols=176 Identities=13% Similarity=0.156 Sum_probs=86.0
Q ss_pred HHhhHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHH
Q 043666 43 RRNLRSTIEKRALSINLDFLQASSAA---QQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQ 119 (680)
Q Consensus 43 Rr~LR~~iE~~~l~~n~~~L~~f~~v---~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~ 119 (680)
+..|...++.=...+++++.+.+... ...+..++.++......|...++.|..++.....--=++-.++.+++.+..
T Consensus 37 ~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ 116 (291)
T PF10475_consen 37 QEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKK 116 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555544333 345566777888888888999999988776644433334455555555444
Q ss_pred HHHHHHHHHhcccCCHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 120 RQEIVSCFLRDYQLSNEEINALRDEDLDESFFKALAHVQEIHANCKVLLRTHHQRAGLELMDMMAMYQEGAYERLCRWVQ 199 (680)
Q Consensus 120 K~~ll~~Fl~~F~Ls~~E~~~L~~~~Vd~~FF~aL~rv~~I~~~c~~LL~~~~q~aGleiMe~~s~~~e~A~erL~~w~q 199 (680)
=.+.|..+..=.+.-+.=...|.+| +|..||+=+.+.+ .++.. -.|...+..++..++.-++++-.=+.
T Consensus 117 ll~~L~~i~~v~~~~~~l~~ll~~~----dy~~Al~li~~~~----~~l~~---l~~~~c~~~L~~~L~e~~~~i~~~ld 185 (291)
T PF10475_consen 117 LLEKLEQIKTVQQTQSRLQELLEEG----DYPGALDLIEECQ----QLLEE---LKGYSCVRHLSSQLQETLELIEEQLD 185 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHH----HHHHh---cccchHHHHHhHHHHHHHHHHHHHHH
Confidence 4444444433222222222223233 4666665443333 33321 12333333333333333333333333
Q ss_pred HHHhhhcCCCCccchHHHHHHHHHHhcCch
Q 043666 200 AECRKLGDTENPEVGELLKTAVRCLKERPV 229 (680)
Q Consensus 200 ~e~~~l~~~~~~e~~~~l~~al~~L~~rp~ 229 (680)
..+..+...-+|+.=..+..|+..|-+-..
T Consensus 186 ~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~ 215 (291)
T PF10475_consen 186 SDLSKVCQDFDPDKYSKVQEAYQLLGKTQS 215 (291)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhhHH
Confidence 333222222345555667777777764433
No 13
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=80.79 E-value=49 Score=32.41 Aligned_cols=40 Identities=20% Similarity=0.468 Sum_probs=28.5
Q ss_pred CCchhHHHHHHHHhccCCC----C--hHHHHHHHHhhhhccCCCHH
Q 043666 2 ALAPGLSRKLKKVLESRTE----T--PDLLASLKTLSTFYEENTPH 41 (680)
Q Consensus 2 ~~a~~l~~k~~kvL~~~~~----~--~~~~~aL~~Ls~~~~~nt~~ 41 (680)
.+|..+-+-+.++...-=. . |=++.+|+.|..++..|..+
T Consensus 3 ~lA~~Ig~EfE~lId~~G~e~v~~LmP~VV~vLE~Le~~~~~n~~~ 48 (158)
T PF09744_consen 3 DLASSIGKEFERLIDRYGEEAVKGLMPKVVRVLELLESLASRNQEH 48 (158)
T ss_pred HHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3566666777776655322 2 77889999999999987755
No 14
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=77.66 E-value=1.5e+02 Score=34.78 Aligned_cols=200 Identities=22% Similarity=0.281 Sum_probs=88.8
Q ss_pred hHHHHHHHHhhhhccCC--CHHHHHhhHHH---HHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 22 PDLLASLKTLSTFYEEN--TPHARRNLRST---IEKRALSINLDFLQ---ASSAAQQALDQVEEEVNSLAECCDRIEKAL 93 (680)
Q Consensus 22 ~~~~~aL~~Ls~~~~~n--t~~aRr~LR~~---iE~~~l~~n~~~L~---~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L 93 (680)
..+..-++-++.-|.-| ....-|.+... |+++.-.+...+-+ .|+.+...++.+...+..+...-.++.+.|
T Consensus 323 ~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l 402 (560)
T PF06160_consen 323 KELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESL 402 (560)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666677766643 33344444432 22333332222222 455555666665555555555555555555
Q ss_pred hhhhhhhcchHHHHHHHHHHHHHHHHHHHH--H----HHHHhcccCCHHHHHhcc----CCCCChhHHHHHHHHHHHHHH
Q 043666 94 NSCNATTGNIIETTERLKRDLDVNTQRQEI--V----SCFLRDYQLSNEEINALR----DEDLDESFFKALAHVQEIHAN 163 (680)
Q Consensus 94 ~~~~~~t~~ll~e~~~L~~~~~~l~~K~~l--l----~~Fl~~F~Ls~~E~~~L~----~~~Vd~~FF~aL~rv~~I~~~ 163 (680)
.+-..+-...=+.+..++.+...+..+=+- | ..|++.|....+++..|. ..|||.+=- -..+..+..+
T Consensus 403 ~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v--~~~l~~a~~~ 480 (560)
T PF06160_consen 403 QSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEV--NKQLEEAEDD 480 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH--HHHHHHHHHH
Confidence 544333333333344443333322222000 0 333333333333333332 133332110 0011111111
Q ss_pred HHHhhcccCcchHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhcCCCCccchHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 043666 164 CKVLLRTHHQRAGLELMDMMAMYQEGA--YERLCRWVQAECRKLGDTENPEVGELLKTAVRCLKERPVLFKYCAEEVANM 241 (680)
Q Consensus 164 c~~LL~~~~q~aGleiMe~~s~~~e~A--~erL~~w~q~e~~~l~~~~~~e~~~~l~~al~~L~~rp~lf~~~ld~~a~~ 241 (680)
. -.+-+.+...++.| .|++..|-.| +...+|++..-+.+|...-++.=. |..+++..+++
T Consensus 481 v------------~~L~~~t~~li~~A~L~E~~iQYaNR-----YR~~~~~v~~al~~Ae~~F~~~~~-Y~~ALe~i~~a 542 (560)
T PF06160_consen 481 V------------ETLEEKTEELIDNATLAEQLIQYANR-----YRSDNPEVDEALTEAEDLFRNEYD-YEKALETIATA 542 (560)
T ss_pred H------------HHHHHHHHHHHHHHHHHHHHHHHHhc-----ccCCCHHHHHHHHHHHHHHHhhCC-HHHHHHHHHHH
Confidence 1 12223333333333 2455444444 445789999999988777665333 35566666554
No 15
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.50 E-value=1.5e+02 Score=34.63 Aligned_cols=161 Identities=13% Similarity=0.185 Sum_probs=94.1
Q ss_pred HhhHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Q 043666 44 RNLRSTIEKRALSINLDFLQ-------ASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDV 116 (680)
Q Consensus 44 r~LR~~iE~~~l~~n~~~L~-------~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~ 116 (680)
..||.+++--+-..+...++ +|--+...|..+++.+++|.....++.+.+.+.+...+.-+....+-..++..
T Consensus 49 etLrddLrlylksl~~aMieLIN~DYADFVnLStnLVgld~aln~i~qpL~qlreei~s~rgsV~ea~~alr~q~se~~~ 128 (705)
T KOG2307|consen 49 ETLRDDLRLYLKSLQNAMIELINDDYADFVNLSTNLVGLDDALNKIEQPLNQLREEIKSTRGSVGEAERALRQQCSELCS 128 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45666666666666655554 78888889999999999999999999998888665555444444433344444
Q ss_pred HHHHHHHHHHHHhcccCCHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHhhccc--CcchHHHHHHHHHHHHHHHHHHH
Q 043666 117 NTQRQEIVSCFLRDYQLSNEEINALRDEDLDESFFKALAHVQEIHANCKVLLRTH--HQRAGLELMDMMAMYQEGAYERL 194 (680)
Q Consensus 117 l~~K~~ll~~Fl~~F~Ls~~E~~~L~~~~Vd~~FF~aL~rv~~I~~~c~~LL~~~--~q~aGleiMe~~s~~~e~A~erL 194 (680)
++.|+..+. + -|.++..++++. ++|++.. .|..|.- | .||+
T Consensus 129 ~Re~k~~ll---d--------------------l~~v~~~ieKL~---k~L~s~psk~q~~~a~-s----------LERi 171 (705)
T KOG2307|consen 129 NREKKIELL---D--------------------LIYVLVAIEKLS---KMLLSPPSKEQQDGAT-S----------LERI 171 (705)
T ss_pred HHHHHHHHH---H--------------------HHHHHHHHHHHH---HHhcCCcccccccccc-h----------HHHH
Confidence 444443332 1 233444444443 3454322 2444421 1 6777
Q ss_pred HHHHHH------HHhhhcCC----CCccchHHHHHHHHH-----HhcCchhHHHHHHHHHHH
Q 043666 195 CRWVQA------ECRKLGDT----ENPEVGELLKTAVRC-----LKERPVLFKYCAEEVANM 241 (680)
Q Consensus 195 ~~w~q~------e~~~l~~~----~~~e~~~~l~~al~~-----L~~rp~lf~~~ld~~a~~ 241 (680)
.-|+++ +|+++.-. +......+|++++.. |+..|.-...|+-.|+..
T Consensus 172 Alelnqlkf~a~h~k~~l~p~~e~ria~~~~~L~qsl~~lf~eglqsa~~~l~nclriYatl 233 (705)
T KOG2307|consen 172 ALELNQLKFHASHLKGSLFPHSEERIAAEKIILSQSLAVLFAEGLQSAAGDLQNCLRIYATL 233 (705)
T ss_pred HHHHHHHHHHHHHhhcccCcchhhHHhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 777765 35443111 112223556665443 456788888899888763
No 16
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=74.28 E-value=25 Score=34.42 Aligned_cols=77 Identities=19% Similarity=0.285 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHhc
Q 043666 64 ASSAAQQALDQVEEEVNSLAECCDRIEKALNS--CNATTGNIIETTERLKRDLDVNTQRQEIVSCFLRDYQLSNEEINAL 141 (680)
Q Consensus 64 ~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~--~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl~~F~Ls~~E~~~L 141 (680)
+...+...+..+..++..+...|..++..|.. +.-.+.++...+..|..+...++.|-+-+.. ..-..|++|...+
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~--~~~~vs~ee~~~~ 150 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS--GSKPVSPEEKEKL 150 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCCHHHHHHH
Confidence 44555667888888999999999999999976 4446678999999999999999988777766 4455777777655
Q ss_pred c
Q 043666 142 R 142 (680)
Q Consensus 142 ~ 142 (680)
.
T Consensus 151 ~ 151 (169)
T PF07106_consen 151 E 151 (169)
T ss_pred H
Confidence 3
No 17
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=71.09 E-value=4.8 Score=37.84 Aligned_cols=79 Identities=10% Similarity=0.119 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 48 STIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEIVSC 126 (680)
Q Consensus 48 ~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~ 126 (680)
..++++++++=.+=-++|-.+...|..+.+.++.|......+++.+.+.+.......++++..-++++.+..++..+..
T Consensus 40 ~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~~~k~~l~~ 118 (133)
T PF06148_consen 40 KELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKELREEKALLKL 118 (133)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHHHHHHT-SS
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455443222224688899999999999999999999999999999999999999999888888888888766543
No 18
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=67.30 E-value=1.9e+02 Score=31.48 Aligned_cols=105 Identities=18% Similarity=0.266 Sum_probs=56.0
Q ss_pred HHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHH
Q 043666 42 ARRNLRSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQ 121 (680)
Q Consensus 42 aRr~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~ 121 (680)
++++.+.=|+. -+....+.++|..+.++++.+.+.+.++.+.|.......... .++ ++....+-.+.
T Consensus 34 a~~~y~~fi~~--~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~-------~~~----r~~~~~~l~~~ 100 (338)
T PF04124_consen 34 AFRNYKTFIDN--AECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKI-------SEE----RKKASLLLENH 100 (338)
T ss_pred HHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH----HHHHHHHHHHH
Confidence 55555555554 344556666666667777777777777777766665544331 111 11111222222
Q ss_pred HHHHHHHhcccCCHHHHHhccCCCCCh--hHHHHHHHHHHHHH
Q 043666 122 EIVSCFLRDYQLSNEEINALRDEDLDE--SFFKALAHVQEIHA 162 (680)
Q Consensus 122 ~ll~~Fl~~F~Ls~~E~~~L~~~~Vd~--~FF~aL~rv~~I~~ 162 (680)
...++=.-|++--..++++|--++ +|...+.|+..-+.
T Consensus 101 ---~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~ 140 (338)
T PF04124_consen 101 ---DRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSRFP 140 (338)
T ss_pred ---HHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHhcc
Confidence 222333336777778888875543 56666655555443
No 19
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=60.73 E-value=61 Score=32.69 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=11.8
Q ss_pred HHHHhccCCCC--hHHHHHHHHhhh
Q 043666 11 LKKVLESRTET--PDLLASLKTLST 33 (680)
Q Consensus 11 ~~kvL~~~~~~--~~~~~aL~~Ls~ 33 (680)
+.+|...+.|| ..+..-+++|+.
T Consensus 56 ~e~v~~l~idd~~~~f~~~~~tl~~ 80 (190)
T PF05266_consen 56 AEKVKKLQIDDSRSSFESLMKTLSE 80 (190)
T ss_pred HHHHHHcccCCcHHHHHHHHHHHHH
Confidence 44555566666 344444444444
No 20
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=59.41 E-value=1.4e+02 Score=34.02 Aligned_cols=112 Identities=16% Similarity=0.118 Sum_probs=62.0
Q ss_pred HHHHHHHHhhhhccCCCHHH------HHhhHHHHHHHHHHhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 23 DLLASLKTLSTFYEENTPHA------RRNLRSTIEKRALSINLD------FLQASSAAQQALDQVEEEVNSLAECCDRIE 90 (680)
Q Consensus 23 ~~~~aL~~Ls~~~~~nt~~a------Rr~LR~~iE~~~l~~n~~------~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~ 90 (680)
++..-+..+...|++|.|.- ...|+..+.++.-..+.. .=.....+...+..++.++..+....+.++
T Consensus 258 ~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~ 337 (498)
T TIGR03007 258 ALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELT 337 (498)
T ss_pred HHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777888887774 122222222222111000 000123344556666666666666666666
Q ss_pred HHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 043666 91 KALNSCNATTGNIIETTERLKRDLDVNTQRQEIVSCFLRDYQLS 134 (680)
Q Consensus 91 ~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl~~F~Ls 134 (680)
.++...+...+.+-+.-..+..=.+..+.+++.+..+++++.-.
T Consensus 338 ~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea 381 (498)
T TIGR03007 338 ARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESA 381 (498)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555555555555555555666677788888888877543
No 21
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=59.05 E-value=81 Score=26.01 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHH
Q 043666 70 QALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNT 118 (680)
Q Consensus 70 ~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~ 118 (680)
+.=..|+..+.++.+.+-..+.+|..+....+.+..+++.|+.+.+.+.
T Consensus 11 rakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 11 RAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445677788889999999999999999999999999999999987654
No 22
>PRK09039 hypothetical protein; Validated
Probab=58.88 E-value=1.3e+02 Score=33.02 Aligned_cols=69 Identities=19% Similarity=0.294 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHH-HHHHHHHHHHhcc
Q 043666 63 QASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNT-QRQEIVSCFLRDY 131 (680)
Q Consensus 63 ~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~-~K~~ll~~Fl~~F 131 (680)
..|.+...++..+..+|+.|...+..++..|...+...++.-.++..|+.+.+..- .|-+-|..|++.|
T Consensus 130 ~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 130 QVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 46777778889999999999999999999999988888888888888888876554 3466677777777
No 23
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=57.71 E-value=1.1e+02 Score=28.62 Aligned_cols=71 Identities=21% Similarity=0.293 Sum_probs=52.2
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHH
Q 043666 44 RNLRSTIEKRALSINLDFLQASSAAQ---QALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDL 114 (680)
Q Consensus 44 r~LR~~iE~~~l~~n~~~L~~f~~v~---~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~ 114 (680)
+.+.+.|+..+...+...|..+..+. ..+..|...|..|+.++++++.++..-...........+.++.-.
T Consensus 43 ~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~ 116 (132)
T PF10392_consen 43 QELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTS 116 (132)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888877654 467788889999999999999988776555555555555554443
No 24
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=56.40 E-value=2.2e+02 Score=28.48 Aligned_cols=116 Identities=14% Similarity=0.188 Sum_probs=82.1
Q ss_pred CCChHHHHHHHHhhhhccCCCHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 043666 19 TETPDLLASLKTLSTFYEENTPHARRNLRSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNA 98 (680)
Q Consensus 19 ~~~~~~~~aL~~Ls~~~~~nt~~aRr~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~ 98 (680)
...++|-.++...-.. ....-|-++-..|+-+-..|---=++-..|.+.+-.|+..|+.|....++.-+.+.+-..
T Consensus 32 m~TEEFSa~IG~vLd~----yL~yQKafnE~MekYLe~lNlPSr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~e 107 (189)
T TIGR02132 32 IKREEFSALMGNVLDL----NLFYQKALNDTTGNYLEQVNVPTKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQE 107 (189)
T ss_pred HchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555444333 334677777778888877777777777777888888888888888888887777776555
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH
Q 043666 99 TTGNIIETTERLKRDLDVNTQRQEIVSCFLRDYQLSNEEI 138 (680)
Q Consensus 99 ~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl~~F~Ls~~E~ 138 (680)
....+=.++..+......++.|-.-+-..++.=+=|++|.
T Consensus 108 q~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~ 147 (189)
T TIGR02132 108 QAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDEL 147 (189)
T ss_pred hCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHH
Confidence 6666778888999999988888665555666555565554
No 25
>PRK10884 SH3 domain-containing protein; Provisional
Probab=55.55 E-value=1.4e+02 Score=30.41 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=10.2
Q ss_pred CCCHHHHHhhHHHHHHHHHHhh
Q 043666 37 ENTPHARRNLRSTIEKRALSIN 58 (680)
Q Consensus 37 ~nt~~aRr~LR~~iE~~~l~~n 58 (680)
.++|.+|-.| -.+|+++-+..
T Consensus 86 s~~p~~~~rl-p~le~el~~l~ 106 (206)
T PRK10884 86 STTPSLRTRV-PDLENQVKTLT 106 (206)
T ss_pred cCCccHHHHH-HHHHHHHHHHH
Confidence 3555666555 24444444433
No 26
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=54.83 E-value=2e+02 Score=27.43 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=51.8
Q ss_pred hHHHHHHHHhhhhccC--CCHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 043666 22 PDLLASLKTLSTFYEE--NTPHARRNLRSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNAT 99 (680)
Q Consensus 22 ~~~~~aL~~Ls~~~~~--nt~~aRr~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~ 99 (680)
..+.-||..|++=-.. --...=+.++..+++.+-.+=.+-=+.|...+..+..+.+.+.+..+.+..+++.|..++..
T Consensus 22 ~pv~~al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~ 101 (142)
T PF04048_consen 22 NPVELALSLLDDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSL 101 (142)
T ss_pred cHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888877742000 01112245666677666655555555555555555555566666666666666666665555
Q ss_pred hcchHHHHHHHHHHHH
Q 043666 100 TGNIIETTERLKRDLD 115 (680)
Q Consensus 100 t~~ll~e~~~L~~~~~ 115 (680)
.+.=-++...|..+..
T Consensus 102 L~~~~~eL~~L~~~s~ 117 (142)
T PF04048_consen 102 LGCRREELKELWQRSQ 117 (142)
T ss_pred HhcCCHHHHHHHHHHH
Confidence 5444455555554443
No 27
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=53.83 E-value=57 Score=28.92 Aligned_cols=67 Identities=18% Similarity=0.239 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh------hhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHh
Q 043666 74 QVEEEVNSLAECCDRIEKALNSC------NATTGNIIETTERLKRDLDVNTQRQEIVSCFLRDYQLSNEEINA 140 (680)
Q Consensus 74 ~l~~~v~~l~~~c~~m~~~L~~~------~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl~~F~Ls~~E~~~ 140 (680)
.+++.|+.|.+.+..-......+ ...+.+|......+..++..++.==.++..--++|.|++.|+..
T Consensus 9 ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~ 81 (97)
T PF09177_consen 9 EVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISR 81 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHH
Confidence 44445555655555555544333 24556666777777777777766666777778888888888754
No 28
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=53.08 E-value=1.2e+02 Score=27.08 Aligned_cols=70 Identities=9% Similarity=0.125 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 57 INLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCN---ATTGNIIETTERLKRDLDVNTQRQEIVSC 126 (680)
Q Consensus 57 ~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~---~~t~~ll~e~~~L~~~~~~l~~K~~ll~~ 126 (680)
.....++++-.+.++-..+...++.++.--..+...+...+ .....+..++..+.++...++.+..-+..
T Consensus 23 ~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 23 GDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777788888888888888888888888876544 36888999999999999888887655543
No 29
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=52.28 E-value=1.4e+02 Score=28.09 Aligned_cols=32 Identities=16% Similarity=0.382 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 59 LDFLQASSAAQQALDQVEEEVNSLAECCDRIE 90 (680)
Q Consensus 59 ~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~ 90 (680)
.+|+...+.|...|..|...|+.|...-..+.
T Consensus 2 ~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~ 33 (151)
T cd00179 2 EEFFEEVEEIRGNIDKISEDVEELQKLHSQLL 33 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888887777777766655443
No 30
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=51.58 E-value=77 Score=27.99 Aligned_cols=54 Identities=24% Similarity=0.324 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHH
Q 043666 48 STIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIE 105 (680)
Q Consensus 48 ~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~ 105 (680)
.++|.++-. .=.+...+...|+......+.+...|.++..+|..+-...+.|++
T Consensus 35 ~~~e~ei~~----l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL~ 88 (89)
T PF13747_consen 35 DELEEEIQR----LDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVLD 88 (89)
T ss_pred hhHHHHHHH----HHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555533 334567788899999999999999999999999887666666553
No 31
>PF12081 GldM_N: GldM N-terminal domain; InterPro: IPR022720 This domain is found in bacteria at the N terminus of the gliding motility-associated protein, GldM. This domain is typically between 169 to 182 amino acids in length. This domain has two completely conserved residues (Y and N) that may be functionally important. GldM, is named for the member from Flavobacterium johnsoniae UW101 Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes [].
Probab=50.34 E-value=2.4e+02 Score=28.18 Aligned_cols=114 Identities=15% Similarity=0.250 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Q 043666 60 DFLQASSAAQQALDQVEEEVNSLAECCDRIEKAL----NSCNATTGNIIETTERLKRDLDVNTQRQEIVSCFLRDYQLSN 135 (680)
Q Consensus 60 ~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L----~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl~~F~Ls~ 135 (680)
++|+.|+-+.+.|..--...++ ..+.+-..| ............++.. +..+-.-+-.|++..
T Consensus 1 EVL~~F~~in~~l~~s~~~~~~---~N~~~~~~l~~k~~~np~k~~~~~~kA~~-------vk~~s~~l~~~i~~l---- 66 (194)
T PF12081_consen 1 EVLDAFGLINESLEESNANAEK---SNDNLYAALEVKASENPAKYGEWYKKAKQ-------VKKKSDELYAYIEEL---- 66 (194)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH----
Confidence 4788999999777664444333 333333333 2222233334444443 444434444444433
Q ss_pred HHHHhcc--CCCCChhHHHHHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHHHHH
Q 043666 136 EEINALR--DEDLDESFFKALAHVQEIHANCKVLLRTHHQRAGLELMDMMAMYQEGA 190 (680)
Q Consensus 136 ~E~~~L~--~~~Vd~~FF~aL~rv~~I~~~c~~LL~~~~q~aGleiMe~~s~~~e~A 190 (680)
-..|. .|.-+.. +..|++-..+..--.++++.....-|.+++.+++.|.+..
T Consensus 67 --K~~l~~~~~g~d~~-~~~~~~~d~~d~~~~~m~~~~~~~~G~eL~~~i~~yr~~l 120 (194)
T PF12081_consen 67 --KEELIKEAGGKDPD-YGNMDKKDNLDAVERFMLGDNLSGKGKELKKKINAYREFL 120 (194)
T ss_pred --HHHHHHHcCCCCCc-hhhcccchhhhHHHHHHhCccccchHHHHHHHHHHHHHHH
Confidence 12222 2323333 7788877777766677777666788999999999998654
No 32
>PF07340 Herpes_IE1: Cytomegalovirus IE1 protein; InterPro: IPR010855 Expression from a human cytomegalovirus early promoter (E1.7) has been shown to be activated in trans by the IE2 gene product. Although the IE1 gene product alone had no effect on this early viral promoter, maximal early promoter activity was detected when both IE1 and IE2 gene products were present []. The IE1 protein from cytomegalovirus is also known as UL123.; GO: 0050792 regulation of viral reproduction, 0042025 host cell nucleus
Probab=49.71 E-value=4.1e+02 Score=29.63 Aligned_cols=156 Identities=11% Similarity=0.168 Sum_probs=95.7
Q ss_pred HHHHHhcccCCHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHH----HHHHH
Q 043666 124 VSCFLRDYQLSNEEINALRDEDLDESFFKALAHVQEIHANCKVLLRTHHQRAGLELMDMMAMYQEGAYERL----CRWVQ 199 (680)
Q Consensus 124 l~~Fl~~F~Ls~~E~~~L~~~~Vd~~FF~aL~rv~~I~~~c~~LL~~~~q~aGleiMe~~s~~~e~A~erL----~~w~q 199 (680)
+....++|+++|.- -+-|-..|+.+-..-.+.. ..+|..++++.....+--.+|+ |+|+.
T Consensus 151 ~~~~~~nY~vpp~~---------~ekwm~clK~l~d~av~~s-------~kle~alk~Kv~~kkddL~~k~~Yt~~Ky~e 214 (392)
T PF07340_consen 151 MNDMYENYVVPPDK---------QEKWMACLKELADVAVNAS-------KKLEKALKEKVQQKKDDLKRKCTYTCLKYIE 214 (392)
T ss_pred HHHHccCCcCChhh---------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34445677777654 3455555555443333332 4567889999998888888886 44444
Q ss_pred HHHhhhcCCCCccchHHHHHHHHHHhcCchhHHH--------HHHHHHHHHHHHH--HHH-HHHHHhcCC------CCCC
Q 043666 200 AECRKLGDTENPEVGELLKTAVRCLKERPVLFKY--------CAEEVANMRHNAL--FRR-FLSALTRGG------PGGL 262 (680)
Q Consensus 200 ~e~~~l~~~~~~e~~~~l~~al~~L~~rp~lf~~--------~ld~~a~~R~~~L--~~~-F~~aLt~g~------~~g~ 262 (680)
...+++ -.|.......+|+.+|++=|.+=.+ +++-+=.-|..++ ++. |.+-||.+. ..+.
T Consensus 215 ~~mk~~---~~PKttn~~sQA~~fL~nlp~~d~d~v~~~g~~iik~LD~Eq~~Vl~~id~~f~~ll~~~~~~~~~E~k~~ 291 (392)
T PF07340_consen 215 MFMKNL---CMPKTTNGQSQAKAFLRNLPQCDPDEVNEYGQKIIKTLDKEQKEVLFHIDNVFMDLLTTCVKAMYKEGKVK 291 (392)
T ss_pred HHHccC---CCCCCcccHHHHHHHHhccccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 445554 6799999999999999987765322 2222333344433 222 666555321 1223
Q ss_pred CCCccccccCcchhhhhHHHHHHHHhhhHHHHHHhhcC
Q 043666 263 PRPIEVHAHDPLRYVGDMLGWLHQALASERELVLGLLD 300 (680)
Q Consensus 263 ~rPIel~AhDP~RYvgDmLAwvHqaiasE~Efl~sLF~ 300 (680)
.--+-+..|+|+--..+++..+--.|..|-- ..+++
T Consensus 292 ~D~~mm~my~~Itq~s~~~~vL~~fIleET~--~ii~~ 327 (392)
T PF07340_consen 292 NDECMMSMYAPITQLSEFVNVLSAFILEETV--VIIAK 327 (392)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--HHHHc
Confidence 4567788899998888887666555555543 44554
No 33
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=48.62 E-value=1.3e+02 Score=31.28 Aligned_cols=59 Identities=20% Similarity=0.297 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHH
Q 043666 59 LDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVN 117 (680)
Q Consensus 59 ~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l 117 (680)
...+.+.....+.|..|+.|++.|.....+.+..-......+..+.++...|+.+...+
T Consensus 42 ~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 42 EELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666777777888888777777777777666666666666666666665533
No 34
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.97 E-value=2.1e+02 Score=29.63 Aligned_cols=76 Identities=13% Similarity=0.223 Sum_probs=44.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 51 EKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEIVSC 126 (680)
Q Consensus 51 E~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~ 126 (680)
-+++...+.+|++..+......+++..++..-..-.....+-+...+..-..+-+++..+|++.+.+....+++..
T Consensus 39 r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lke 114 (246)
T KOG4657|consen 39 RRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKE 114 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777666666666665555444433333333333444445555667777777776666666555543
No 35
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=47.72 E-value=1.3e+02 Score=31.43 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043666 177 LELMDMMAMYQEGAYERLCRWVQ 199 (680)
Q Consensus 177 leiMe~~s~~~e~A~erL~~w~q 199 (680)
..+-++|+..+=.=|+|+.+|-+
T Consensus 166 ~~L~~~l~~ell~~yeri~~~~k 188 (239)
T COG1579 166 EELKEKLDPELLSEYERIRKNKK 188 (239)
T ss_pred HHHHHhcCHHHHHHHHHHHhcCC
Confidence 35666777777788888888874
No 36
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=47.72 E-value=1.9e+02 Score=30.11 Aligned_cols=94 Identities=14% Similarity=0.143 Sum_probs=60.2
Q ss_pred CCHH-HHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhhhhcchHHHHHHHHHHH
Q 043666 38 NTPH-ARRNLRSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAEC--CDRIEKALNSCNATTGNIIETTERLKRDL 114 (680)
Q Consensus 38 nt~~-aRr~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~--c~~m~~~L~~~~~~t~~ll~e~~~L~~~~ 114 (680)
|+-. .=-+|+..+.+++.....-.-+.+.-+..++..|..++..|.-- --++..+|++ +.-..+..+-+.|+++.
T Consensus 153 ngq~l~Gd~l~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~--~~q~~~~ae~seLq~r~ 230 (289)
T COG4985 153 NGQELDGDPLERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDD--EFQQHYVAEKSELQKRL 230 (289)
T ss_pred CCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccH--HHHHHHHHHHHHHHHHH
Confidence 4433 33678888888888877766666666666666666666554322 2222223322 33456777888898888
Q ss_pred HHHHHHHHHHHHHHhcccC
Q 043666 115 DVNTQRQEIVSCFLRDYQL 133 (680)
Q Consensus 115 ~~l~~K~~ll~~Fl~~F~L 133 (680)
+.++.+-.-|.+=++|++|
T Consensus 231 ~~l~~~L~~L~~e~~r~~l 249 (289)
T COG4985 231 AQLQTELDALRAELERQFL 249 (289)
T ss_pred HHHHHHHHHHhhhhhhceE
Confidence 8888887777776666655
No 37
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.55 E-value=3e+02 Score=31.36 Aligned_cols=68 Identities=18% Similarity=0.295 Sum_probs=46.7
Q ss_pred hhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHhhc
Q 043666 94 NSCNATTGNIIETTERLKRDLDVNTQRQEIVSCFLRDYQLSNEEINALRDEDLDESFFKALAHVQEIHANCKVLLR 169 (680)
Q Consensus 94 ~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl~~F~Ls~~E~~~L~~~~Vd~~FF~aL~rv~~I~~~c~~LL~ 169 (680)
.+-+++...+++++..||.|...+..+-. ..|-.+. .-.-.++-=|+..=.|.+=+-+||.+|..++.
T Consensus 399 RKq~~DI~Kil~etreLqkq~ns~se~L~------Rsfavtd--ellf~sakhddhvR~aykllt~iH~nc~ei~E 466 (521)
T KOG1937|consen 399 RKQEQDIVKILEETRELQKQENSESEALN------RSFAVTD--ELLFMSAKHDDHVRLAYKLLTRIHLNCMEILE 466 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhHHHHH--HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666778889999888876665522 2233332 22233566788888999999999999998874
No 38
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=46.65 E-value=5.8e+02 Score=30.48 Aligned_cols=66 Identities=12% Similarity=0.178 Sum_probs=34.2
Q ss_pred HHHHHHHHhcC--chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccccCcchhhhhHHHHHHHHhhhH
Q 043666 217 LKTAVRCLKER--PVLFKYCAEEVANMRHNALFRRFLSALTRGGPGGLPRPIEVHAHDPLRYVGDMLGWLHQALASE 291 (680)
Q Consensus 217 l~~al~~L~~r--p~lf~~~ld~~a~~R~~~L~~~F~~aLt~g~~~g~~rPIel~AhDP~RYvgDmLAwvHqaiasE 291 (680)
|.-|+..+..+ |.++...+..+=..|+..++..|+..+ .+.+++-.||. -+-|++...+...|+.|
T Consensus 564 ~~~al~~~~~~~~p~iiD~p~~~lD~~~r~~l~~~~~~~~--------~~QvIils~d~-e~~~~~~~~l~~~i~~~ 631 (650)
T TIGR03185 564 LLWGLAKVSGRRLPVIIDTPLGRLDSSHRENLVVNYFPKA--------SHQVLLLSTDE-EVDEKHYNLLKPNISHE 631 (650)
T ss_pred HHHHHHHhcCCCCCEEEcCCccccChHHHHHHHHHHhhcc--------CCeEEEEechH-hhCHHHHHHHHHHhhhh
Confidence 44445444443 555666666665666666666565432 13455555665 44445444444444443
No 39
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=46.35 E-value=2.5e+02 Score=30.77 Aligned_cols=128 Identities=16% Similarity=0.207 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q 043666 58 NLDFLQASSAAQQALDQ-------VEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQR-QEIVSCFLR 129 (680)
Q Consensus 58 n~~~L~~f~~v~~~l~~-------l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K-~~ll~~Fl~ 129 (680)
|+..+.+...+.+-+.+ ++..+..+.+--...+-+|++...+.++--++..+|..|..+.-.. +.+......
T Consensus 108 nqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQa 187 (401)
T PF06785_consen 108 NQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQA 187 (401)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444455555444444 4444444444445555566666677777777777777775544433 333333333
Q ss_pred cccCCHHHHHhccCCCCC--hhHHHHH-HHHHHHHHHHHHhhccc---------Ccc-hHHHHHHHHHHHHHHHHHH
Q 043666 130 DYQLSNEEINALRDEDLD--ESFFKAL-AHVQEIHANCKVLLRTH---------HQR-AGLELMDMMAMYQEGAYER 193 (680)
Q Consensus 130 ~F~Ls~~E~~~L~~~~Vd--~~FF~aL-~rv~~I~~~c~~LL~~~---------~q~-aGleiMe~~s~~~e~A~er 193 (680)
.|+ |- ..++| ..+-..| .||+..--..+.||+.+ ... ...++-.+|..-+++...|
T Consensus 188 tf~----eq----~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~~~~e~~p~~~~~~s~~v~~ql~selkkivf~ 256 (401)
T PF06785_consen 188 TFV----EQ----HSMLDKRQAYIGKLESKVQDLMYEIRNLLQLESDMKESMPSTPSPSSQDVPKQLVSELKKIVFK 256 (401)
T ss_pred ccc----cc----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchhhhhHHHHHHHHHHHHHH
Confidence 332 11 12333 3444443 35555555556677532 112 3456666666444444433
No 40
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=46.15 E-value=3.1e+02 Score=27.20 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=17.0
Q ss_pred CCCCChhHHH-HH-HHHHHHHHHHHHhh
Q 043666 143 DEDLDESFFK-AL-AHVQEIHANCKVLL 168 (680)
Q Consensus 143 ~~~Vd~~FF~-aL-~rv~~I~~~c~~LL 168 (680)
+|-|+++|.+ -+ .++.+..+..+.+.
T Consensus 92 ~a~i~e~~L~~el~~~l~~~~~~~~~~~ 119 (204)
T PF04740_consen 92 NAIIDEDFLESELKKKLNQLKEQIEDLQ 119 (204)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3669999997 44 66666666655444
No 41
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=45.77 E-value=66 Score=30.59 Aligned_cols=47 Identities=15% Similarity=0.295 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHH
Q 043666 68 AQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDL 114 (680)
Q Consensus 68 v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~ 114 (680)
+...++.+...+++..+..+.|+.++.....+|..|+.+++.|.++.
T Consensus 22 li~tlkkv~~tldevakt~~~l~~qv~gi~~eT~~Ll~K~N~L~eDv 68 (139)
T COG4768 22 LIITLKKVSKTLDEVAKTLKGLTSQVDGITHETEELLHKTNTLAEDV 68 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999998765
No 42
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=45.01 E-value=2.3e+02 Score=25.26 Aligned_cols=31 Identities=10% Similarity=0.334 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 59 LDFLQASSAAQQALDQVEEEVNSLAECCDRI 89 (680)
Q Consensus 59 ~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m 89 (680)
.+|+.....|...|..|...|..|......+
T Consensus 4 ~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~ 34 (117)
T smart00503 4 DEFFEKVEEIRANIQKISQNVAELQKLHEEL 34 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777666666665555444
No 43
>PF08656 DASH_Dad3: DASH complex subunit Dad3; InterPro: IPR013965 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=44.28 E-value=86 Score=27.15 Aligned_cols=26 Identities=12% Similarity=0.295 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 57 INLDFLQASSAAQQALDQVEEEVNSL 82 (680)
Q Consensus 57 ~n~~~L~~f~~v~~~l~~l~~~v~~l 82 (680)
..+++|++|+.++.++..+.+.+..|
T Consensus 4 LEq~VL~eY~~La~~L~~L~~~l~~L 29 (78)
T PF08656_consen 4 LEQEVLDEYQRLADNLKTLSDTLKDL 29 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999977777777
No 44
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=44.07 E-value=84 Score=30.96 Aligned_cols=70 Identities=10% Similarity=0.287 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 043666 64 ASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEIVSCFLRDYQL 133 (680)
Q Consensus 64 ~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl~~F~L 133 (680)
.+..+...+..+...+..+...+.++...+..-...+......+..+......+..--+-|....++|.|
T Consensus 143 ~~~~i~~~i~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~a~~L~~~v~~Fkl 212 (213)
T PF00015_consen 143 SVEEISDSIEEISESAEEQSESIEQINESIEEISEISEQISASSEEIAEAAEELSESAEELQELVDRFKL 212 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCHHHCH
T ss_pred hhhHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3333334444444444444444444444444444444444444444444444444444445555666654
No 45
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=43.35 E-value=4.9e+02 Score=29.14 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=46.0
Q ss_pred HHHHHHHHhhhhccCCCHHH------HHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043666 23 DLLASLKTLSTFYEENTPHA------RRNLRSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSC 96 (680)
Q Consensus 23 ~~~~aL~~Ls~~~~~nt~~a------Rr~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~ 96 (680)
++..-|..|+..|+++.|.- ..+|+..|..+..+.-...=.++... ...++.+....++.+.++.
T Consensus 265 ~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~-------~~~~~~l~~~l~~~~~~~~-- 335 (444)
T TIGR03017 265 RAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRIL-------KQREAELREALENQKAKVL-- 335 (444)
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH--
Confidence 33445566777788888774 33444444444333333322222222 2233333333333333332
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 043666 97 NATTGNIIETTERLKRDLDVNTQRQEIVSCFLRDY 131 (680)
Q Consensus 97 ~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl~~F 131 (680)
.+-.....+..=.+.++..++++..|++|+
T Consensus 336 -----~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~ 365 (444)
T TIGR03017 336 -----ELNRQRDEMSVLQRDVENAQRAYDAAMQRY 365 (444)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223333333445577788888888887
No 46
>KOG3244 consensus Protein involved in ubiquinone biosynthesis [Coenzyme transport and metabolism]
Probab=43.31 E-value=27 Score=36.06 Aligned_cols=75 Identities=20% Similarity=0.363 Sum_probs=58.3
Q ss_pred HHHHhcCchhHHHHHH--HHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccccCcchhhhh-HHHHHHHHhhhHHHHHHh
Q 043666 221 VRCLKERPVLFKYCAE--EVANMRHNALFRRFLSALTRGGPGGLPRPIEVHAHDPLRYVGD-MLGWLHQALASERELVLG 297 (680)
Q Consensus 221 l~~L~~rp~lf~~~ld--~~a~~R~~~L~~~F~~aLt~g~~~g~~rPIel~AhDP~RYvgD-mLAwvHqaiasE~Efl~s 297 (680)
-+.|.++|-.-++.+| ...+.=.+++-..|..=|.+..-+-+.|| |+||+-| ++|||-|---.=.||..+
T Consensus 98 rrIL~ekPRi~t~tld~~~L~~LP~nTfG~~Y~~fl~~~nvsPDtR~-------pvrFidd~e~AYvmqRYRE~HDf~Ht 170 (267)
T KOG3244|consen 98 RRILLEKPRITTETLDLKKLRTLPENTFGKAYVKFLDRENVSPDTRP-------PVRFIDDPELAYVMQRYRECHDFYHT 170 (267)
T ss_pred HHHHHhCCCccccccChHHHHhCCCccHHHHHHHHHhhcCCCCCCCC-------CccccCCHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888877 66677777777888877777643323453 8999965 789999999999999999
Q ss_pred hcCCC
Q 043666 298 LLDPD 302 (680)
Q Consensus 298 LF~~~ 302 (680)
+|+..
T Consensus 171 i~~mP 175 (267)
T KOG3244|consen 171 ILNMP 175 (267)
T ss_pred HhCCC
Confidence 99764
No 47
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=43.07 E-value=2.8e+02 Score=27.26 Aligned_cols=61 Identities=16% Similarity=0.319 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 67 AAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEIVSCF 127 (680)
Q Consensus 67 ~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~F 127 (680)
.+.++++.+...+..+.+.+.++.+.+...+.....+-.....++.....+..+.+-....
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 187 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQEL 187 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333433333334433333333333333444444444444444444444444433333
No 48
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=42.95 E-value=1.1e+02 Score=26.48 Aligned_cols=46 Identities=11% Similarity=0.360 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHH
Q 043666 69 QQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDL 114 (680)
Q Consensus 69 ~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~ 114 (680)
..-+.++...+++++...+.+++++.....++..++.+++.+.++-
T Consensus 18 ~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv 63 (90)
T PF06103_consen 18 IKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDV 63 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777888888888888777777777888887776553
No 49
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=42.81 E-value=2.7e+02 Score=26.11 Aligned_cols=81 Identities=20% Similarity=0.190 Sum_probs=52.0
Q ss_pred CCHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHH
Q 043666 38 NTPHARRNLRSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVN 117 (680)
Q Consensus 38 nt~~aRr~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l 117 (680)
|+.-+.-+|-+++-++++++..+-=.-...|..+|+.+.+.+. .-.-.|...|+..-.+.-.+.-+++-|.+|.+++
T Consensus 62 ~dliaqgnln~el~ke~lkianeqn~~ln~vn~~l~~in~~l~---~ylpkitsmls~vmkqny~lslqie~ls~qlqei 138 (177)
T PF12495_consen 62 NDLIAQGNLNSELSKEILKIANEQNQMLNNVNNQLNSINSMLN---TYLPKITSMLSDVMKQNYVLSLQIEFLSKQLQEI 138 (177)
T ss_pred HHHHHcCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 6677899999999999999887765555556666665554432 2334455555554444444555666677777666
Q ss_pred HHHH
Q 043666 118 TQRQ 121 (680)
Q Consensus 118 ~~K~ 121 (680)
..|-
T Consensus 139 sdkl 142 (177)
T PF12495_consen 139 SDKL 142 (177)
T ss_pred hhhc
Confidence 6663
No 50
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=42.75 E-value=1.5e+02 Score=25.60 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043666 81 SLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEIVSCFLRD 130 (680)
Q Consensus 81 ~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl~~ 130 (680)
.+..-.+.++..+.+--.-...+-+.-..++.-.+.++.|+++|..|.++
T Consensus 32 ~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 32 SLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred HHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333322233334444455555566678999999998865
No 51
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=42.68 E-value=89 Score=27.36 Aligned_cols=44 Identities=23% Similarity=0.409 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHH
Q 043666 62 LQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKR 112 (680)
Q Consensus 62 L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~ 112 (680)
.++|..|...|+. |+++.+.++++-..-....+.|++.-.+-+.
T Consensus 25 ~~E~~~ins~LD~-------Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~ 68 (83)
T PF03670_consen 25 EEEYAAINSMLDQ-------LNSCLDHLEQRNDHLHAQLQELLESNRQIRL 68 (83)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4566666666666 5555555554444333333334544444333
No 52
>PRK12704 phosphodiesterase; Provisional
Probab=41.32 E-value=5.8e+02 Score=29.81 Aligned_cols=14 Identities=29% Similarity=0.695 Sum_probs=12.4
Q ss_pred CCCCccccccCcch
Q 043666 262 LPRPIEVHAHDPLR 275 (680)
Q Consensus 262 ~~rPIel~AhDP~R 275 (680)
+|--|.++++||+|
T Consensus 249 tp~~v~ls~~~~~r 262 (520)
T PRK12704 249 TPEAVILSGFDPIR 262 (520)
T ss_pred CCCeEEEecCChhh
Confidence 57889999999988
No 53
>PRK10884 SH3 domain-containing protein; Provisional
Probab=40.86 E-value=1.3e+02 Score=30.68 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=7.5
Q ss_pred chHHHHHHHHHHHHHHHH
Q 043666 102 NIIETTERLKRDLDVNTQ 119 (680)
Q Consensus 102 ~ll~e~~~L~~~~~~l~~ 119 (680)
.|-++-++|+++...++.
T Consensus 136 ~L~~~n~~L~~~l~~~~~ 153 (206)
T PRK10884 136 GLKEENQKLKNQLIVAQK 153 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 54
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=40.81 E-value=3.6e+02 Score=28.03 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHH------HHHHHhcccCCHHHHH
Q 043666 71 ALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEI------VSCFLRDYQLSNEEIN 139 (680)
Q Consensus 71 ~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~l------l~~Fl~~F~Ls~~E~~ 139 (680)
.+..+++.+.+++.-...+....+.-....+.+..++..|+.....++-+-++ -+...+.|-|.|.++.
T Consensus 157 eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~i~dl~~et~~l~p~die 231 (290)
T COG4026 157 ELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEELISDLVKETLNLAPKDIE 231 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhccCchhcc
Confidence 33333344444444444443333333344444555566666655555555222 2333345555555443
No 55
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=39.52 E-value=7.6e+02 Score=29.81 Aligned_cols=146 Identities=13% Similarity=0.082 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 043666 180 MDMMAMYQEGAYERLCRWVQAECRKLGDTENPEVGELLKTAVRCLKERPVLFKYCAEEVANMRHNALFRRFLSALTRGGP 259 (680)
Q Consensus 180 Me~~s~~~e~A~erL~~w~q~e~~~l~~~~~~e~~~~l~~al~~L~~rp~lf~~~ld~~a~~R~~~L~~~F~~aLt~g~~ 259 (680)
...+...++..++.+=+=+.++|..-+...+ -..++++...|..=-.. ..|++.|.+.+.-..-..-+..-..-..
T Consensus 97 ~~~~~~~I~~~~e~fE~~LL~eFe~ay~~~d---~~~M~~~A~vL~~fngg-~~~i~~fi~k~~~f~~~~~~~~~~~~~~ 172 (710)
T PF07393_consen 97 FEEARENIEKYCEIFENALLREFEIAYREGD---YERMKEFAKVLLEFNGG-SSCIDFFINKHEFFIDEDQLDESNGFED 172 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCC-cHHHHHHHHhChhhhhhhhhccccccch
Confidence 3455666666777777777777765443322 46788888887753322 4799999998765552222210000000
Q ss_pred ----CCCCCCccccccCcchhhhhHHHHHHHHhhhHHHHHHhhcCCCCCCCCcccccccccCCCCCCCcchHHHHHHHHh
Q 043666 260 ----GGLPRPIEVHAHDPLRYVGDMLGWLHQALASERELVLGLLDPDVGDTGLTASQFSKSQNGSGKTDSDLTFVLDRIF 335 (680)
Q Consensus 260 ----~g~~rPIel~AhDP~RYvgDmLAwvHqaiasE~Efl~sLF~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lld~i~ 335 (680)
...+.|-. +......-..+++..|=..+..|...+..+|... ..-+...+.+++
T Consensus 173 ~~~~~~l~d~~~-~~~~~~~~l~~~~~~i~~~i~~e~~iI~~VFp~~---------------------~~Vm~~fiervf 230 (710)
T PF07393_consen 173 EEIWEKLSDPDS-HPPINEESLDAFFEDIRDVINEESKIIDRVFPNP---------------------EPVMQKFIERVF 230 (710)
T ss_pred hHHHHhccCccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCc---------------------HHHHHHHHHHHH
Confidence 00011110 0011223467888999999999999999999432 235677888888
Q ss_pred hhccchhHHHHHHHhhcCc
Q 043666 336 EGVCRPFKVRVEQVLQSQP 354 (680)
Q Consensus 336 ~gl~rplk~RvEqvl~s~~ 354 (680)
+ ..+..+|+.++....
T Consensus 231 ~---~~I~~~i~~lL~~a~ 246 (710)
T PF07393_consen 231 E---QVIQEYIESLLEEAS 246 (710)
T ss_pred H---HHHHHHHHHHHHhhc
Confidence 8 468888998888765
No 56
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=39.00 E-value=4.3e+02 Score=26.80 Aligned_cols=55 Identities=16% Similarity=0.217 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHH
Q 043666 60 DFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDL 114 (680)
Q Consensus 60 ~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~ 114 (680)
.-+..+..|.+-++.+.+.+..+.+....+..+-.....+-+.|+.++..|+++.
T Consensus 57 qal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen 111 (193)
T PF14662_consen 57 QALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEEN 111 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555444444444444455555555555443
No 57
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=38.85 E-value=1.6e+02 Score=26.73 Aligned_cols=9 Identities=22% Similarity=0.438 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 043666 69 QQALDQVEE 77 (680)
Q Consensus 69 ~~~l~~l~~ 77 (680)
.+++..+++
T Consensus 48 ~~Rl~~lE~ 56 (106)
T PF10805_consen 48 DRRLQALET 56 (106)
T ss_pred HHHHHHHHH
Confidence 333333333
No 58
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=38.48 E-value=9.9e+02 Score=30.84 Aligned_cols=19 Identities=11% Similarity=0.326 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhcCchhHHH
Q 043666 215 ELLKTAVRCLKERPVLFKY 233 (680)
Q Consensus 215 ~~l~~al~~L~~rp~lf~~ 233 (680)
.-+++-++-+.+|-.+|.-
T Consensus 1738 ~r~~~vl~~I~~rv~~y~t 1756 (1758)
T KOG0994|consen 1738 KRVESVLDHINERVLYYAT 1756 (1758)
T ss_pred HHHHHHHHHHhhhhhhhhc
Confidence 3444445555555554443
No 59
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=38.40 E-value=3.4e+02 Score=32.93 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 043666 105 ETTERLKRDLDVNTQRQEIVSCFLRDYQ 132 (680)
Q Consensus 105 ~e~~~L~~~~~~l~~K~~ll~~Fl~~F~ 132 (680)
..-.++.+=.++.+.+++++..|+.++.
T Consensus 373 ~~~~e~~~L~Re~~~~~~~Y~~ll~r~~ 400 (754)
T TIGR01005 373 EQQVDLDALQRDAAAKRQLYESYLTNYR 400 (754)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455777888888888773
No 60
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=38.37 E-value=3.8e+02 Score=28.67 Aligned_cols=93 Identities=17% Similarity=0.202 Sum_probs=48.9
Q ss_pred CchhHHHHHHHHhccC------CCC--hHHHHHHHHhhhhccCCCHH-----HHHhhHHHHHHHHHHhhHHHHHHHHHHH
Q 043666 3 LAPGLSRKLKKVLESR------TET--PDLLASLKTLSTFYEENTPH-----ARRNLRSTIEKRALSINLDFLQASSAAQ 69 (680)
Q Consensus 3 ~a~~l~~k~~kvL~~~------~~~--~~~~~aL~~Ls~~~~~nt~~-----aRr~LR~~iE~~~l~~n~~~L~~f~~v~ 69 (680)
..|-++||+++++.+- ++. .|.+++=+.|+..+..++.. .|=..=..--.++.+....-++.|+...
T Consensus 51 ~~pe~sr~L~~LIk~EK~vi~s~e~~are~~~~A~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~L 130 (271)
T PF13805_consen 51 QQPELSRKLQRLIKAEKSVIRSLESAARERKAAAKQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHL 130 (271)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999887542 222 46666666677776665433 1222222222333333344455556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043666 70 QALDQVEEEVNSLAECCDRIEKALNS 95 (680)
Q Consensus 70 ~~l~~l~~~v~~l~~~c~~m~~~L~~ 95 (680)
+.|...+..|+.....-..+.+++..
T Consensus 131 K~IR~~E~sl~p~R~~r~~l~d~I~k 156 (271)
T PF13805_consen 131 KSIRNREESLQPSRDRRRKLQDEIAK 156 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHH
Confidence 66666666666666665556555543
No 61
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=38.15 E-value=1.8e+02 Score=23.58 Aligned_cols=45 Identities=22% Similarity=0.353 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHH
Q 043666 70 QALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDL 114 (680)
Q Consensus 70 ~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~ 114 (680)
.+++.|.++|+.|+.-++++...+...+.+....-+|+..-.+.+
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777666665555444444444444333
No 62
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=37.97 E-value=3.1e+02 Score=29.23 Aligned_cols=95 Identities=23% Similarity=0.293 Sum_probs=59.2
Q ss_pred hHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hhhcchHHHHHHHHHH------
Q 043666 46 LRSTIEKRALS-INLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCN-----ATTGNIIETTERLKRD------ 113 (680)
Q Consensus 46 LR~~iE~~~l~-~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~-----~~t~~ll~e~~~L~~~------ 113 (680)
|..+||.-+-. +--.-++-|+..+..|++|-+-+-.|.+-...+++.|.... .+-..+.++...|..|
T Consensus 122 lG~~ve~~v~~~c~p~E~~Ky~~fi~Dl~kv~~LLLsLs~RLaRve~aL~~~~~~~~~~Er~~L~~k~~~L~~Q~edAk~ 201 (264)
T PF08687_consen 122 LGAEVEALVQEVCKPNEFEKYRMFIGDLEKVVNLLLSLSGRLARVENALSSLDEDADPEERESLLEKRRLLQRQLEDAKE 201 (264)
T ss_dssp HHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443322 22334566777777777777777777777777777775533 3344455555555544
Q ss_pred -HHHHHHHHHHHHHHHhcccCCHHHHHhc
Q 043666 114 -LDVNTQRQEIVSCFLRDYQLSNEEINAL 141 (680)
Q Consensus 114 -~~~l~~K~~ll~~Fl~~F~Ls~~E~~~L 141 (680)
++.+..|+..+..|+.+| ||+++.+--
T Consensus 202 LKe~~drRe~~v~~iL~~~-L~~eq~~dy 229 (264)
T PF08687_consen 202 LKENLDRRERVVSEILARY-LSEEQLADY 229 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHH-S-HHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHh-CCHHHHHHH
Confidence 345667788999999998 888877543
No 63
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=37.14 E-value=8.3e+02 Score=29.81 Aligned_cols=15 Identities=20% Similarity=0.627 Sum_probs=9.1
Q ss_pred hhHHHHHHHHhccCC
Q 043666 5 PGLSRKLKKVLESRT 19 (680)
Q Consensus 5 ~~l~~k~~kvL~~~~ 19 (680)
++....|+.+|....
T Consensus 503 ~sF~~~Ik~lL~r~~ 517 (717)
T PF10168_consen 503 PSFEKHIKSLLQRSS 517 (717)
T ss_pred chHHHHHHHHhcCCC
Confidence 456666777766543
No 64
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=37.12 E-value=46 Score=28.97 Aligned_cols=39 Identities=26% Similarity=0.345 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHhccCCCC
Q 043666 108 ERLKRDLDVNTQRQEIVSCFLRDYQLSNEEINALRDEDL 146 (680)
Q Consensus 108 ~~L~~~~~~l~~K~~ll~~Fl~~F~Ls~~E~~~L~~~~V 146 (680)
.+|..+-...+.=++-=.++.++|.||++|.++|.+|++
T Consensus 11 ~~L~~dp~~rerF~~DPea~~~~~gLt~eE~~aL~~~D~ 49 (81)
T cd07922 11 QELFKDPGLIERFQDDPSAVFEEYGLTPAERAALREGTF 49 (81)
T ss_pred HHHhcCHHHHHHHHHCHHHHHHHcCCCHHHHHHHHccCH
Confidence 334444443344445567888999999999999999874
No 65
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=36.83 E-value=1.9e+02 Score=29.85 Aligned_cols=73 Identities=11% Similarity=0.222 Sum_probs=50.0
Q ss_pred HHhhHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Q 043666 43 RRNLRSTIEKRA--LSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLD 115 (680)
Q Consensus 43 Rr~LR~~iE~~~--l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~ 115 (680)
+..++..+|+.. -..+....++-....+.++.-+++++...+..+.++.+......+-..++++.+.||++.+
T Consensus 136 ~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 136 NEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 344444444422 3334556667777777777777788888888888888887777777777888888877654
No 66
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=36.38 E-value=7.6e+02 Score=28.92 Aligned_cols=166 Identities=13% Similarity=0.109 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Q 043666 56 SINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEIVSCFLRDYQLSN 135 (680)
Q Consensus 56 ~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl~~F~Ls~ 135 (680)
..+..+|++|+. +..+...+........+++..|...+..-...-.+.+.|+.+.++++ ...|.|
T Consensus 144 ~~~~~lLD~~~~----~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe-----------~~~l~~ 208 (563)
T TIGR00634 144 DEQRQLLDTFAG----ANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE-----------EADLQP 208 (563)
T ss_pred HHHHHHHHHhcC----chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-----------hCCcCC
Q ss_pred HHHHhccCCCCChhHHHHHHHHHHHHHHHHHhhcccCcc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 043666 136 EEINALRDEDLDESFFKALAHVQEIHANCKVLLRTHHQR------AGLELMDMMAMYQEGAYERLCRWVQAECRKLGDTE 209 (680)
Q Consensus 136 ~E~~~L~~~~Vd~~FF~aL~rv~~I~~~c~~LL~~~~q~------aGleiMe~~s~~~e~A~erL~~w~q~e~~~l~~~~ 209 (680)
.|...| ++=++.|...++|.+.|...+..=+.. ..++.+....+.++..|..=+.=+...+.+.+. +
T Consensus 209 ~E~e~L------~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~-~ 281 (563)
T TIGR00634 209 GEDEAL------EAEQQRLSNLEKLRELSQNALAALRGDVDVQEGSLLEGLGEAQLALASVIDGSLRELAEQVGNALT-E 281 (563)
T ss_pred CcHHHH------HHHHHHHhCHHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHH-H
Q ss_pred CccchHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q 043666 210 NPEVGELLKTAVRCLKERPVLFKYCAEEVANMRH 243 (680)
Q Consensus 210 ~~e~~~~l~~al~~L~~rp~lf~~~ld~~a~~R~ 243 (680)
-.++..-++.-..-+.-+|.-+.++-+.+...++
T Consensus 282 l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~ 315 (563)
T TIGR00634 282 VEEATRELQNYLDELEFDPERLNEIEERLAQIKR 315 (563)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
No 67
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=36.22 E-value=2.1e+02 Score=28.57 Aligned_cols=74 Identities=16% Similarity=0.301 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHH
Q 043666 47 RSTIEKRALSINLDFL---QASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQR 120 (680)
Q Consensus 47 R~~iE~~~l~~n~~~L---~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K 120 (680)
++.+..+++..+.+.= .........|..+...+..+..-|.+....|.........+-+|...|+-+...++.|
T Consensus 90 ~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k 166 (194)
T PF08614_consen 90 KGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEK 166 (194)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555554441 2344455677778888888888888888888887778888888888888888777777
No 68
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=34.96 E-value=1.1e+03 Score=30.36 Aligned_cols=28 Identities=25% Similarity=0.226 Sum_probs=18.1
Q ss_pred ccccccCcchhhhhHHHHHHHHhhhHHHHHHh
Q 043666 266 IEVHAHDPLRYVGDMLGWLHQALASERELVLG 297 (680)
Q Consensus 266 Iel~AhDP~RYvgDmLAwvHqaiasE~Efl~s 297 (680)
|+++|+-|-.-+ ..+|..--+|+-+.--
T Consensus 1050 iei~a~ppgK~~----~~l~~LSGGEKsLtAl 1077 (1163)
T COG1196 1050 IEISARPPGKKL----QSLSLLSGGEKSLTAL 1077 (1163)
T ss_pred cEEEEECCCCCc----cchhhcCCcHHHHHHH
Confidence 667777774443 3777777777765443
No 69
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=34.19 E-value=1.5e+02 Score=28.18 Aligned_cols=77 Identities=23% Similarity=0.251 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHH-------HHHHHHHHhcccCCHH
Q 043666 64 ASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQR-------QEIVSCFLRDYQLSNE 136 (680)
Q Consensus 64 ~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K-------~~ll~~Fl~~F~Ls~~ 136 (680)
-|..+.++++.=...+..++..++.|.+++..-..........+..++.+...+.-| .+++. ..-|.|+++
T Consensus 31 GF~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr--~~g~~l~~e 108 (141)
T PF13874_consen 31 GFEDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILR--NRGYALSPE 108 (141)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H--------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCCHH
Confidence 455555555555555555555555555555443333333334444444333333222 22221 122668888
Q ss_pred HHHhcc
Q 043666 137 EINALR 142 (680)
Q Consensus 137 E~~~L~ 142 (680)
|+....
T Consensus 109 Ee~L~~ 114 (141)
T PF13874_consen 109 EEELRK 114 (141)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 777654
No 70
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=33.95 E-value=3.7e+02 Score=24.53 Aligned_cols=65 Identities=12% Similarity=0.099 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHH
Q 043666 61 FLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEIVS 125 (680)
Q Consensus 61 ~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~ 125 (680)
...+|+.+..+...+..-|-+=......+++.|....+..+.+..|.++|.-..+.+..|-..|.
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ 67 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQ 67 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999988888888888888888999999999888999999999999888888888766554
No 71
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=33.89 E-value=4.8e+02 Score=29.63 Aligned_cols=73 Identities=12% Similarity=0.121 Sum_probs=45.1
Q ss_pred HHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHH
Q 043666 41 HARRNLRSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDL 114 (680)
Q Consensus 41 ~aRr~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~ 114 (680)
.-+++.+++||+-.-++.. .=+.+..+.++|+.++++++.+.....+....+........++......|+.+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~-~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIRE-QQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3456677777765544433 235566666666666666666666666666666666666666666666666655
No 72
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=33.68 E-value=3.5e+02 Score=26.26 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHhccCC
Q 043666 65 SSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEIVSCFLRDYQLSNEEINALRDE 144 (680)
Q Consensus 65 f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl~~F~Ls~~E~~~L~~~ 144 (680)
|+.-.+.|......++.+-...+++.+.|..-......|.++++.|+.+-+.+-.++.-+..+-+.- -
T Consensus 2 y~~y~~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I------~------ 69 (157)
T PF04136_consen 2 YRQYLDYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEI------S------ 69 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH------H------
Confidence 4555677777777888888888888888888888889999999999999888888877777665432 1
Q ss_pred CCChhHHHHHHHHHHHH
Q 043666 145 DLDESFFKALAHVQEIH 161 (680)
Q Consensus 145 ~Vd~~FF~aL~rv~~I~ 161 (680)
=.=.||..|+.+.+--
T Consensus 70 -~~L~yF~~Ld~itr~L 85 (157)
T PF04136_consen 70 -EKLQYFEELDPITRRL 85 (157)
T ss_pred -HHhHHHhhHHHHHHHH
Confidence 1237999998886543
No 73
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=33.23 E-value=1.2e+03 Score=30.42 Aligned_cols=219 Identities=16% Similarity=0.167 Sum_probs=112.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhhhcchHHHHHHHHHHHHHHHHHHHH
Q 043666 49 TIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNS-----CNATTGNIIETTERLKRDLDVNTQRQEI 123 (680)
Q Consensus 49 ~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~-----~~~~t~~ll~e~~~L~~~~~~l~~K~~l 123 (680)
++|..+...+.++...++.+-+.++.-...+..=...|+.+....-. ...++-...-..+.. ..+.. ..++..
T Consensus 906 ~~~~~l~~s~~e~~~~~~~i~~~Ie~~~~~~~n~~~i~d~~~k~~~~h~~~~~~~d~~~~i~~~r~~-~~~~~-~~~~~~ 983 (1394)
T KOG0298|consen 906 NLKSDLIASFEEVKGVMQEICEAIETGGALVLNRMEIIDFIEKVTVCHLTDIEDYDKDKPIKPKRHR-RCRLC-LRRKSL 983 (1394)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHhccCCCcchHhhcccccccccchhh-hhhhh-hhhhHH
Confidence 34455556667777777777777777766666666666666655422 111111111111111 11111 122334
Q ss_pred HHHHHhcccCCHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 043666 124 VSCFLRDYQLSNEEINALRDEDLDESFFKALAHVQEIHANCKVLLRTHHQRAGLELMDMMAMYQEGAYERLCRWVQAE-- 201 (680)
Q Consensus 124 l~~Fl~~F~Ls~~E~~~L~~~~Vd~~FF~aL~rv~~I~~~c~~LL~~~~q~aGleiMe~~s~~~e~A~erL~~w~q~e-- 201 (680)
+..+-+.|.+-+.+..--..+-+...|-.+.+|- .|...|+..|...-...|.-.|+.++-.++.=.-|+-.|.+-+
T Consensus 984 i~~~ce~~~~q~k~~~~~s~~~~l~~~~~~~ekS-i~~~~~~~~l~~e~~~~~t~~~~~l~~lqnt~~~~~~~~~~~qq~ 1062 (1394)
T KOG0298|consen 984 ILFECELFALQPKEDATVSESLELSSMEKSFEKS-IIAFLRKKQLFSEWKEEATPLLELLSCLQNTYKFRIEYWIEVQQM 1062 (1394)
T ss_pred HHHHHHHHhcCccccchhhhhhccchhhhcchhh-HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555544433322344556666666655 5666677777666666676777777777777666777776643
Q ss_pred HhhhcCCCCccchHHHHHHHHHHhcCch------hHHHHHHHHHHHHHHHHHHHHHHHHh---c--------C---CCCC
Q 043666 202 CRKLGDTENPEVGELLKTAVRCLKERPV------LFKYCAEEVANMRHNALFRRFLSALT---R--------G---GPGG 261 (680)
Q Consensus 202 ~~~l~~~~~~e~~~~l~~al~~L~~rp~------lf~~~ld~~a~~R~~~L~~~F~~aLt---~--------g---~~~g 261 (680)
.+++ +.++++.+ +- +|++.++ ..+.+++.....-...+ +.+|+. - | +.++
T Consensus 1063 ~~~~---~~~~~~~m-~l---~lkd~~~~~~~y~i~~~qld~~~~~nt~s~---~~~q~~~ls~~G~~r~lk~l~e~~~~ 1132 (1394)
T KOG0298|consen 1063 VDAL---DELEMSKM-RL---YLKDDEEEQSIYRILACQLDEQSQLNTYSL---QTSQLSFLSIPGLLRYLKGLKESKAD 1132 (1394)
T ss_pred HHhh---cccchhhh-ee---eecCcHHHHHHHHHHHhhHHHHHHHhHHHH---HHhhhhhhccchHHHHHHHHHHHhcc
Confidence 3443 33343311 10 4444332 33445555544433332 223331 1 0 1234
Q ss_pred CCCCccccccCcchhhhhHH
Q 043666 262 LPRPIEVHAHDPLRYVGDML 281 (680)
Q Consensus 262 ~~rPIel~AhDP~RYvgDmL 281 (680)
.+.|| .+.-+|+||+-+.-
T Consensus 1133 ~~~~i-~~~es~~~y~~~~~ 1151 (1394)
T KOG0298|consen 1133 TPCKI-AQTESDVRYLMNLS 1151 (1394)
T ss_pred Ccccc-CCccchHHHHHHhh
Confidence 56776 56688999987654
No 74
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.57 E-value=9.6e+02 Score=28.95 Aligned_cols=168 Identities=15% Similarity=0.165 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHH----H---HHHHHHHhcccCCHHHHHhccCCCCChhHH
Q 043666 79 VNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQR----Q---EIVSCFLRDYQLSNEEINALRDEDLDESFF 151 (680)
Q Consensus 79 v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K----~---~ll~~Fl~~F~Ls~~E~~~L~~~~Vd~~FF 151 (680)
+++--+.+++|.+.|.......+.+=+.++..-..-..+++. + +-|..|..+..++..-..+|+.|+.++.=
T Consensus 227 ldaAl~~vd~~e~~Ld~yediL~hvre~iE~Ieekn~lie~~n~Nn~kL~eEl~kvin~L~vp~shi~aL~egdf~~a~- 305 (867)
T KOG2148|consen 227 LDAALNEVDDMEEWLDSYEDILRHVREDIESIEEKNNLIEMQNVNNKKLIEELDKVINRLDVPSSHIAALTEGDFDEAD- 305 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhccchHHHHHHHHHHHHhccCcHHHHHhcccCCccccc-
Confidence 333344556677777666555555555554444333333322 2 34788999999999999999999987642
Q ss_pred HHHHHHHHHHHHHHHhhcccCc--chHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhcCC------------CC
Q 043666 152 KALAHVQEIHANCKVLLRTHHQ--RAGLELMDMMA-------MYQEGAYERLCRWVQAECRKLGDT------------EN 210 (680)
Q Consensus 152 ~aL~rv~~I~~~c~~LL~~~~q--~aGleiMe~~s-------~~~e~A~erL~~w~q~e~~~l~~~------------~~ 210 (680)
.-++.--.-++.|.+.-|. ..|..-|..+- +..+.=..|+..|+.+-|.++++. --
T Consensus 306 ---~~ieact~aA~al~q~~~~~ldp~~l~m~Avkdqr~eleklk~~FvrrlssfLnnlF~~l~d~~ssd~~~hs~eL~l 382 (867)
T KOG2148|consen 306 ---QGIEACTWAAKALRQLMNPNLDPIYLNMRAVKDQRAELEKLKATFVRRLSSFLNNLFASLGDFLSSDKSYHSTELTL 382 (867)
T ss_pred ---hhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhHhhhhcccc
Confidence 1222222233555554444 44555554433 333444567777777777666541 22
Q ss_pred ccchHHHHHH------HHHHh-cCchhHHHHHHHHHHHHHHHHHHHH
Q 043666 211 PEVGELLKTA------VRCLK-ERPVLFKYCAEEVANMRHNALFRRF 250 (680)
Q Consensus 211 ~e~~~~l~~a------l~~L~-~rp~lf~~~ld~~a~~R~~~L~~~F 250 (680)
|+-++..+++ +.-|+ .+|.-++-.+..|+.+=+.+.-|.|
T Consensus 383 Pnhs~~~r~l~pya~Lm~wlK~~d~k~~~~l~k~Y~dslnlLy~Re~ 429 (867)
T KOG2148|consen 383 PNHSDLHRKLRPYARLMQWLKGLDKKCYGGLRKAYCDSLNLLYRREA 429 (867)
T ss_pred CCchHHHHhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHH
Confidence 5555555555 44555 4577788888899988888776663
No 75
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=32.44 E-value=6.8e+02 Score=27.16 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=18.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 50 IEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKAL 93 (680)
Q Consensus 50 iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L 93 (680)
|-..+.+.....-.+...+.+.+..+...+.++....+.+...+
T Consensus 150 l~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~ 193 (325)
T PF08317_consen 150 LKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEEL 193 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444444444444444444
No 76
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=32.21 E-value=5.1e+02 Score=25.83 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=49.1
Q ss_pred HHHHHHHHhccCCCChHHHHHHHHhhhhccCC--CHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 7 LSRKLKKVLESRTETPDLLASLKTLSTFYEEN--TPHARRNLRSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAE 84 (680)
Q Consensus 7 l~~k~~kvL~~~~~~~~~~~aL~~Ls~~~~~n--t~~aRr~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~ 84 (680)
+--++.||| .+++++|..||..-.-. ++.+-+ -.-.+.++.....-+.+|+...+.+..+.+++.+|..
T Consensus 56 ~EmQlrrvL------hdir~t~q~l~q~~~~~g~~~~~~~---~~~~~sv~~L~~~T~~Elq~mr~~ln~FR~qm~dlE~ 126 (179)
T PF14723_consen 56 TEMQLRRVL------HDIRDTLQNLSQYPVMRGSDLNADP---YSTQRSVRELYSCTVQELQQMRRSLNSFREQMMDLEL 126 (179)
T ss_pred HHHHHHHHH------HHHHHHHHHhccccccccccccccc---cccchhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888 89999999998743311 000000 1111133455556778888888888888888887777
Q ss_pred HHHHHHHHH
Q 043666 85 CCDRIEKAL 93 (680)
Q Consensus 85 ~c~~m~~~L 93 (680)
..-+=+...
T Consensus 127 ~l~~QQalv 135 (179)
T PF14723_consen 127 HLMRQQALV 135 (179)
T ss_pred HHHHhHHHH
Confidence 666554444
No 77
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=31.63 E-value=4.9e+02 Score=25.28 Aligned_cols=70 Identities=11% Similarity=0.229 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Q 043666 46 LRSTIEKRALSINLDFLQASSAAQQALDQVEE----EVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLD 115 (680)
Q Consensus 46 LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~----~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~ 115 (680)
+=.+||++...+.+.+-.-++.+...|..+.+ .++-.+..++.+.+.+..+-..+-.++...+.|.++.+
T Consensus 53 ~L~~LE~~a~~ia~svd~ll~~L~~~L~~mS~~Tv~~~~~y~~sv~~~cdsvD~sik~~y~liakceELn~~M~ 126 (149)
T PF10157_consen 53 VLHDLERDAQAIAESVDSLLRSLRSSLHSMSAITVEHMETYKDSVDKLCDSVDASIKSMYTLIAKCEELNESMK 126 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55688988888888888888888777777655 45555566666666666666666667777777666644
No 78
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=31.37 E-value=4.3e+02 Score=25.50 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=13.1
Q ss_pred CCCChhHHHHHHHHHHHHHH
Q 043666 144 EDLDESFFKALAHVQEIHAN 163 (680)
Q Consensus 144 ~~Vd~~FF~aL~rv~~I~~~ 163 (680)
..||++|=.+..++..-+.+
T Consensus 121 ~~vdee~~~~~~~l~e~Y~~ 140 (145)
T PF14942_consen 121 QRVDEEFREKEERLKEQYSE 140 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45778887777776655443
No 79
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=30.98 E-value=1e+03 Score=29.03 Aligned_cols=10 Identities=30% Similarity=0.494 Sum_probs=5.7
Q ss_pred hHHHHHHHHH
Q 043666 149 SFFKALAHVQ 158 (680)
Q Consensus 149 ~FF~aL~rv~ 158 (680)
+|++-|++++
T Consensus 636 ~~~~EL~~~~ 645 (717)
T PF10168_consen 636 EFKKELERMK 645 (717)
T ss_pred HHHHHHHHHH
Confidence 5666655544
No 80
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=30.27 E-value=2.8e+02 Score=28.91 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=31.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHH
Q 043666 54 ALSINLDFLQASSAAQQALDQ----VEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDL 114 (680)
Q Consensus 54 ~l~~n~~~L~~f~~v~~~l~~----l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~ 114 (680)
.++....+|++|..-...|.. ..+.|..++.-...|+..+..++.+-....+.+..++.+.
T Consensus 26 ~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey 90 (230)
T PF10146_consen 26 SLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEY 90 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555432 2233444455555555555555555555555555555543
No 81
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.68 E-value=1e+03 Score=28.28 Aligned_cols=74 Identities=11% Similarity=0.141 Sum_probs=50.4
Q ss_pred HHHHHHHhhhccch-hHHHHHHHhhcCcchHHHHHHH----hHHHHHHHHHHH-hhCCCchHHHHHHHHHHHHHHHHHHH
Q 043666 328 TFVLDRIFEGVCRP-FKVRVEQVLQSQPSLIISYKLS----NTLEFYSYTISD-LLGRETALCNTLWVLKEAAQKTYFDI 401 (680)
Q Consensus 328 ~~lld~i~~gl~rp-lk~RvEqvl~s~~~~i~~yki~----nLL~fY~~t~~k-~i~~~s~L~~tl~~L~~~a~~~f~~~ 401 (680)
..+++...+.+|+. ++.|.++|..+-++.--.+.++ .|++.|- +|.. ....|++|.+++..+.+..-..|...
T Consensus 631 ~~~~~ad~d~iknspy~lly~~v~~~~~n~~e~~l~an~~R~lVE~ff-rf~~p~~r~D~SL~~ci~~i~e~~~~s~~~~ 709 (758)
T COG4694 631 IKVYKADEDPIKNSPYELLYQEVKQAKENNAEWVLLANAMRRLVEYFF-RFLGPFKRNDSSLSECIENIEEARVNSFISW 709 (758)
T ss_pred eeehhccccchhccHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH-HhcCccccccccHHHHHhhhHhhccccceee
Confidence 44777777888876 9999999998876653333344 4566665 4444 66688888888888877554555444
Q ss_pred H
Q 043666 402 L 402 (680)
Q Consensus 402 l 402 (680)
+
T Consensus 710 ~ 710 (758)
T COG4694 710 A 710 (758)
T ss_pred c
Confidence 3
No 82
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=29.28 E-value=2.4e+02 Score=34.47 Aligned_cols=86 Identities=16% Similarity=0.241 Sum_probs=65.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhccccCCCCcccCCCCCHHHHHHHHHHhHhhhhcCCCC
Q 043666 539 HEVAAEYVKNLGSMIDNHLRILVDKEVDTILRRCGLLPKMRHFRSKEVSLPLAEIEDTSPTSLSECLKAFFGLVLGSESS 618 (680)
Q Consensus 539 ~~f~~~~~~~L~~~i~~~~~~L~~~q~~~lL~~~GL~~~~~~~~~~~~~~~ls~~p~~~~~~l~~~l~~f~~~L~s~~~a 618 (680)
++-.-.+...|++.+...|=..++.++.. +|+.++- .++|-.|..-++..++++...|+-
T Consensus 363 L~~~PTR~~ll~e~v~~gV~~~v~qe~kd---------LY~iLEv-----------eF~PL~l~k~lq~ll~~ls~~~~~ 422 (988)
T KOG2072|consen 363 LPAPPTRKGLLKEAVREGVLSKVDQEVKD---------LYNILEV-----------EFHPLKLCKKLQPLLDKLSESPDK 422 (988)
T ss_pred CCCCccHHHHHHHHHHhccHhhhhHHHHH---------HHHHHHh-----------cCCHHHHHHHHHHHHHHHHcCCCc
Confidence 34445788999999998888888888764 4555554 388999999999999999666765
Q ss_pred hhhhhhccChHHHHHHHHHHHHHHHHHHHHH
Q 043666 619 LPEFELLQVPKLRSEACIQVARSLAEAYEQI 649 (680)
Q Consensus 619 l~~l~~L~sp~l~~~i~~~~~~~~~~~Y~~i 649 (680)
. +.+ |.|.+.|..+.+..++..|+.|
T Consensus 423 ~---QYI--~sLq~v~~~RllqQvSqiY~sI 448 (988)
T KOG2072|consen 423 S---QYI--PSLQDVIILRLLQQVSQIYESI 448 (988)
T ss_pred c---ccc--hhHHHHHHHHHHHHHHHHHHHH
Confidence 2 333 6677778888888888888765
No 83
>PF08965 DUF1870: Domain of unknown function (DUF1870); InterPro: IPR015060 This family consist of hypothetical bacterial proteins. ; PDB: 1S4K_A.
Probab=28.76 E-value=3.4e+02 Score=25.41 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 043666 183 MAMYQEGAYERLCRWVQAECRKL 205 (680)
Q Consensus 183 ~s~~~e~A~erL~~w~q~e~~~l 205 (680)
||.+--+|..+++-..+.||...
T Consensus 1 Mn~~ELqalR~~l~lt~~EaA~~ 23 (118)
T PF08965_consen 1 MNNLELQALRQILGLTVEEAAYY 23 (118)
T ss_dssp --HHHHHHHHHHTT--HHHHHHH
T ss_pred CCHHHHHHHHHHHcCCHHHHHHH
Confidence 56666788889999999998664
No 84
>PRK11637 AmiB activator; Provisional
Probab=28.70 E-value=5e+02 Score=29.25 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Q 043666 64 ASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLD 115 (680)
Q Consensus 64 ~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~ 115 (680)
+-..+.+.++.+...+..++...+..+..+...+.+...+-.++..++++..
T Consensus 69 ~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 69 QRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555555555555555555555555555443
No 85
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=28.57 E-value=6.3e+02 Score=25.57 Aligned_cols=107 Identities=18% Similarity=0.277 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcch-------HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHhccC-
Q 043666 72 LDQVEEEVNSLAECCDRIEKALNSCNATTGNI-------IETTERLKRDLDVNTQRQEIVSCFLRDYQLSNEEINALRD- 143 (680)
Q Consensus 72 l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~l-------l~e~~~L~~~~~~l~~K~~ll~~Fl~~F~Ls~~E~~~L~~- 143 (680)
|+.+...|..|..-.......+.....+...+ ..+...|+.+...-+.-+..+.....+..-.+.+...|.-
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e 108 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWE 108 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544444443333333 4555556666555555577777888888877888877763
Q ss_pred -CCCChhHHHHHHHHHHHHHHHHHhhcccCcchHHH
Q 043666 144 -EDLDESFFKALAHVQEIHANCKVLLRTHHQRAGLE 178 (680)
Q Consensus 144 -~~Vd~~FF~aL~rv~~I~~~c~~LL~~~~q~aGle 178 (680)
......|=.+-.--..++......+..-.|++|+.
T Consensus 109 ~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~k 144 (201)
T PF13851_consen 109 HEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLK 144 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555554444455666643
No 86
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=28.13 E-value=3.9e+02 Score=23.02 Aligned_cols=57 Identities=14% Similarity=0.247 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 67 AAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEIVSCF 127 (680)
Q Consensus 67 ~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~F 127 (680)
.+...++.+.+.++++...+++++..+ .....+.++.+.+-.+...++.|-.-+...
T Consensus 8 ~Ir~dIk~vd~KVdaLq~~V~~l~~~~----~~v~~l~~klDa~~~~l~~l~~~V~~I~~i 64 (75)
T PF05531_consen 8 VIRQDIKAVDDKVDALQTQVDDLESNL----PDVTELNKKLDAQSAQLTTLNTKVNEIQDI 64 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554444333 223345666666666666666664444444
No 87
>PLN02678 seryl-tRNA synthetase
Probab=28.10 E-value=3.7e+02 Score=30.85 Aligned_cols=64 Identities=16% Similarity=0.250 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhhcchHHHHHHHHHHHHHHHHHHHHHH
Q 043666 62 LQASSAAQQALDQVEEEVNSLAECCDRIEKALN---SCNATTGNIIETTERLKRDLDVNTQRQEIVS 125 (680)
Q Consensus 62 L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~---~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~ 125 (680)
+++.-.+.+....+...++.|+.--..+.+.+. ........+.+++..|.++...++.+.+.+.
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~ 98 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAK 98 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444555555554444444443 2334556788888888888887777755443
No 88
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=27.53 E-value=3.7e+02 Score=23.95 Aligned_cols=59 Identities=17% Similarity=0.320 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcch
Q 043666 44 RNLRSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNI 103 (680)
Q Consensus 44 r~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~l 103 (680)
+..=.+|++.+-..++.+ ++|+|-.++|+.|+++|.+|......+-+-...-....+.+
T Consensus 41 ~~~~~~l~~~~~~l~~k~-~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~l 99 (99)
T PF10046_consen 41 KDIAAGLEKNLEDLNQKY-EELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKKL 99 (99)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 89
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=27.34 E-value=7.3e+02 Score=31.33 Aligned_cols=72 Identities=13% Similarity=0.271 Sum_probs=53.9
Q ss_pred HHHH-HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHH
Q 043666 40 PHAR-RNLRSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKR 112 (680)
Q Consensus 40 ~~aR-r~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~ 112 (680)
..++ ++|...|+.+-++++. ....|....++++....++..++.-|+.+.+.+..-......|+.++..|..
T Consensus 486 l~~~iknlnk~L~~r~~elsr-l~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 486 LLNQIKNLNKSLNNRDLELSR-LHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3344 6666666666665543 4567777888888888888888888888888888888888888888888876
No 90
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=27.17 E-value=2.6e+02 Score=24.64 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043666 67 AAQQALDQVEEEVNSLAECCDRIEKALNS 95 (680)
Q Consensus 67 ~v~~~l~~l~~~v~~l~~~c~~m~~~L~~ 95 (680)
.|+.+|++++..+..+....+.|..+|..
T Consensus 2 ~V~~eId~lEekl~~cr~~le~ve~rL~~ 30 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLEAVESRLRR 30 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHcc
Confidence 47889999999999999999999999965
No 91
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=26.55 E-value=6.7e+02 Score=27.14 Aligned_cols=72 Identities=14% Similarity=0.138 Sum_probs=45.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhhcchHHHHHHHHHHHHHHHHHHHHH
Q 043666 53 RALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNS----CNATTGNIIETTERLKRDLDVNTQRQEIV 124 (680)
Q Consensus 53 ~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~----~~~~t~~ll~e~~~L~~~~~~l~~K~~ll 124 (680)
.+-+.|.+|-.+...+..+=+.+.+++..|-+-+...+..++. -++...++..++..|.+-...++.+++-.
T Consensus 249 ~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~Kqem 324 (384)
T KOG0972|consen 249 YLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEM 324 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666676666666666666666666666666666666644 23445566677777766666666665543
No 92
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=26.50 E-value=4.6e+02 Score=26.15 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhhcchHHHHHHHHHHHHHHHHH
Q 043666 64 ASSAAQQALDQVEEEVNSLAECCDRIEKALNS--CNATTGNIIETTERLKRDLDVNTQR 120 (680)
Q Consensus 64 ~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~--~~~~t~~ll~e~~~L~~~~~~l~~K 120 (680)
+...+...+.++...++.+...|..|...|.. ..=.|.++-+++.+|+++-+..+.|
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~er 138 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRER 138 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 45556677888888999999999999988855 3334556667777777666544444
No 93
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=26.23 E-value=5e+02 Score=27.35 Aligned_cols=109 Identities=16% Similarity=0.146 Sum_probs=51.4
Q ss_pred HHHHHhhhhccCCCHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHH
Q 043666 26 ASLKTLSTFYEENTPHARRNLRSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIE 105 (680)
Q Consensus 26 ~aL~~Ls~~~~~nt~~aRr~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~ 105 (680)
..++-|-+|-.+||-+.|+- .-+.+.|-..+..++.-..-|..++++++. +-.
T Consensus 40 gl~dhlftfss~ntervrkl--------------------h~~~~~~y~~e~e~~sy~~e~~~l~~qvs~-------l~~ 92 (389)
T PF06216_consen 40 GLIDHLFTFSSNNTERVRKL--------------------HIISDYIYNKEFERQSYSNEWISLNDQVSH-------LQH 92 (389)
T ss_pred hhhhhheeccCCcHHHHHHH--------------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHH
Confidence 44556677778898777652 122334444444445555555555554443 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHh
Q 043666 106 TTERLKRDLDVNTQRQEIVSCFLRDYQLSNEEINALRDEDLDESFFKALAHVQEIHANCKVL 167 (680)
Q Consensus 106 e~~~L~~~~~~l~~K~~ll~~Fl~~F~Ls~~E~~~L~~~~Vd~~FF~aL~rv~~I~~~c~~L 167 (680)
..+.++++......|-+-|..=+++=.-|-.+..+|+. ||--=.-.+.|.-..+.|
T Consensus 93 ~~~~~r~~~~~~~~~~eglrep~kkpiyttqdke~lr~------ffc~ersmeyiy~hikrl 148 (389)
T PF06216_consen 93 QNSEQRQQIREMREIIEGLREPVKKPIYTTQDKERLRN------FFCEERSMEYIYYHIKRL 148 (389)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCccccccHHHHHH------HhhhhhhHHHHHHHHHHH
Confidence 23334444443333333343334444444444444442 444434444455444444
No 94
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.94 E-value=1.2e+03 Score=30.62 Aligned_cols=144 Identities=13% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHH
Q 043666 41 HARRNLRSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQR 120 (680)
Q Consensus 41 ~aRr~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K 120 (680)
.....|+..++.++-+.-.++-.-.......+......+..+..-+.++...+.........+..+...|+.+.+..+..
T Consensus 283 ~~~~rL~~~i~~~l~~s~eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~~l~~e~gkl~~~~~~~~~~ 362 (1311)
T TIGR00606 283 KDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEH 362 (1311)
T ss_pred HHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----HHHHHHHHhcccCCHHHHHhccCCCCChh----HHHHHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHHHH
Q 043666 121 ----QEIVSCFLRDYQLSNEEINALRDEDLDES----FFKALAHVQEIHANCKVLLRTHHQRAGLELMDMMAMYQEG 189 (680)
Q Consensus 121 ----~~ll~~Fl~~F~Ls~~E~~~L~~~~Vd~~----FF~aL~rv~~I~~~c~~LL~~~~q~aGleiMe~~s~~~e~ 189 (680)
..++..+-.+|.++. +.+.|+++. |...+.+...=+..+-.-+...++..=...=..++.+.+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~ 434 (1311)
T TIGR00606 363 IRARDSLIQSLATRLELDG-----FERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDE 434 (1311)
T ss_pred HHHHHHHHHHHHHhcCcCC-----CCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 95
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=25.92 E-value=85 Score=26.91 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=20.6
Q ss_pred HHHHHHhcccCCHHHHHhccCCCC
Q 043666 123 IVSCFLRDYQLSNEEINALRDEDL 146 (680)
Q Consensus 123 ll~~Fl~~F~Ls~~E~~~L~~~~V 146 (680)
-=.++.++|-||++|.++|.++++
T Consensus 25 dp~a~~~~~~Lt~eE~~al~~rD~ 48 (77)
T cd07321 25 DPEAVLAEYGLTPEEKAALLARDV 48 (77)
T ss_pred CHHHHHHHcCCCHHHHHHHHcCCH
Confidence 346788999999999999998774
No 96
>PHA02562 46 endonuclease subunit; Provisional
Probab=25.83 E-value=8.1e+02 Score=28.25 Aligned_cols=98 Identities=14% Similarity=0.205 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHhcc
Q 043666 63 QASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEIVSCFLRDYQLSNEEINALR 142 (680)
Q Consensus 63 ~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl~~F~Ls~~E~~~L~ 142 (680)
..+..+.++++.+++++..+.....+.+....... .+..+...++++ +..++.-+..-..+-.-=+.++..|.
T Consensus 299 ~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~----~~~~~i~el~~~---i~~~~~~i~~~~~~~~~l~~ei~~l~ 371 (562)
T PHA02562 299 DRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFN----EQSKKLLELKNK---ISTNKQSLITLVDKAKKVKAAIEELQ 371 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666665554443221 122222222222 12222223333333223344455554
Q ss_pred C--CCCChhHHHHHHHHHHHHHHHHHh
Q 043666 143 D--EDLDESFFKALAHVQEIHANCKVL 167 (680)
Q Consensus 143 ~--~~Vd~~FF~aL~rv~~I~~~c~~L 167 (680)
+ ..+.+++..+.+++..+..++..+
T Consensus 372 ~~~~~~~~~l~~l~~~l~~~~~~~~~~ 398 (562)
T PHA02562 372 AEFVDNAEELAKLQDELDKIVKTKSEL 398 (562)
T ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 3 447778899999999998888755
No 97
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=25.43 E-value=1.1e+03 Score=27.33 Aligned_cols=72 Identities=10% Similarity=0.064 Sum_probs=17.9
Q ss_pred chhHHHHHHHhhcCcchHHHHHHHhHHHHHHHHHHHh-hCCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043666 340 RPFKVRVEQVLQSQPSLIISYKLSNTLEFYSYTISDL-LGRETA-----LCNTLWVLKEAAQKTYFDILKSRGEKLLR 411 (680)
Q Consensus 340 rplk~RvEqvl~s~~~~i~~yki~nLL~fY~~t~~k~-i~~~s~-----L~~tl~~L~~~a~~~f~~~l~~~~~~l~~ 411 (680)
+-+..++.+++..+.++-.+|.|.+=++.|..+|.+. +...+. ....+.+|.+.-.......++.+..+++.
T Consensus 148 ~~l~~~l~~l~~~~l~~~~ll~ll~W~~~Y~~~m~~~~l~~~~~l~plL~~~~~~~L~~~Yl~~~~~~~~eW~~n~l~ 225 (566)
T PF06046_consen 148 NALSDHLQELISPDLEANDLLSLLSWVNTYPSIMGHPDLAIKEQLGPLLPDEKLEELEDDYLSRIQKKMKEWMDNILE 225 (566)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCHHHHhhheechhhChHhhcCCcccchhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777888888999999999999999988873 321122 23556777766666666666666666654
No 98
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=25.15 E-value=8.9e+02 Score=26.12 Aligned_cols=146 Identities=18% Similarity=0.211 Sum_probs=84.0
Q ss_pred HHHhhHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHH----HH
Q 043666 42 ARRNLRSTIEKR-ALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDL----DV 116 (680)
Q Consensus 42 aRr~LR~~iE~~-~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~----~~ 116 (680)
+-..+|..+++. ....+...+ -|+-+..-.++...-+..+....+++++++-..... ..+.++..|++.. +.
T Consensus 119 ~~~~vr~r~~~~~~~~~~~~~l-~~~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~--~~l~~l~~l~~~l~~lr~~ 195 (322)
T COG0598 119 AFDRVRERLEKGTLLTRGADEL-LYALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTN--EELERLGELRRSLVYLRRA 195 (322)
T ss_pred cHHHHHHHHhccccccCCHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccH--HHHHHHHHHHHHHHHHHHH
Confidence 455566666662 222222211 122333334444455666777777777777553333 6777777777664 33
Q ss_pred HHHHHHHHHHHHhccc--CCHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHH
Q 043666 117 NTQRQEIVSCFLRDYQ--LSNEEINALRDEDLDESFFKALAHVQEIHANCKVLLRTHHQRAGLELMDMMAMYQEGAYERL 194 (680)
Q Consensus 117 l~~K~~ll~~Fl~~F~--Ls~~E~~~L~~~~Vd~~FF~aL~rv~~I~~~c~~LL~~~~q~aGleiMe~~s~~~e~A~erL 194 (680)
+..++.++..+..... ++++...-++ +|.+++=.+.+.+....+....|+. ..+..+|..++....+|
T Consensus 196 l~~~~~~l~~l~~~~~~~~~~~~~~~l~--dv~~~~~~~~~~~~~~~~~l~~l~d--------~~~s~is~~~N~imk~L 265 (322)
T COG0598 196 LAPLRDVLLRLARRPLDWLSEEDREYLR--DVLDHLTQLIEMLEALRERLSSLLD--------AYLSLINNNQNEIMKIL 265 (322)
T ss_pred HHhHHHHHHHHHhcCcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 4445777888888874 5555544443 3666666666666666666665543 45556677777777777
Q ss_pred HHHHHH
Q 043666 195 CRWVQA 200 (680)
Q Consensus 195 ~~w~q~ 200 (680)
--|..=
T Consensus 266 Ti~s~i 271 (322)
T COG0598 266 TIVSTI 271 (322)
T ss_pred HHHHHH
Confidence 666553
No 99
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=24.86 E-value=2.7e+02 Score=34.16 Aligned_cols=70 Identities=11% Similarity=0.213 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 47 RSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEIVSC 126 (680)
Q Consensus 47 R~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~ 126 (680)
-..+++++++.+.-.+..|.|+...+.++...++.|... ......+.+....| +..+..|..++..
T Consensus 46 ~~~~~~~vl~~~~~l~~~yd~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 111 (828)
T PRK13837 46 EASLQRDVLRARAGLLRNYDPLVRRLGALRDALADLRRL-----------ADGDAELDQLLDRL---KASVDRTDAAVEA 111 (828)
T ss_pred HHHHHHHHHHHccchhcccchhhhhHHHHHHHHHHHHHh-----------hccchhHHHHHHHH---HHhhhhHHHHHHH
Confidence 457889999999999999999999999977766666655 33344444444444 3445666667766
Q ss_pred HHhc
Q 043666 127 FLRD 130 (680)
Q Consensus 127 Fl~~ 130 (680)
|+.+
T Consensus 112 f~~~ 115 (828)
T PRK13837 112 FKSQ 115 (828)
T ss_pred Hhcc
Confidence 6665
No 100
>PRK11677 hypothetical protein; Provisional
Probab=24.75 E-value=3.8e+02 Score=25.58 Aligned_cols=60 Identities=5% Similarity=0.083 Sum_probs=39.2
Q ss_pred hhhccCCCHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043666 32 STFYEENTPHARRNLRSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNS 95 (680)
Q Consensus 32 s~~~~~nt~~aRr~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~ 95 (680)
-.++........++| |+++-+...++=+-=++|.+++..-.+.++.|...|.++.++|..
T Consensus 20 ~~R~~~~~~~~q~~l----e~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~HlA~ 79 (134)
T PRK11677 20 AMRFGNRKLRQQQAL----QYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHMAK 79 (134)
T ss_pred HHhhccchhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443444444 444444444544444677888888888888899999999999966
No 101
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=24.73 E-value=1.2e+03 Score=27.33 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=12.4
Q ss_pred CCCCccccccCcchh
Q 043666 262 LPRPIEVHAHDPLRY 276 (680)
Q Consensus 262 ~~rPIel~AhDP~RY 276 (680)
+|--|.++..||+|-
T Consensus 243 tp~~v~ls~fdp~rr 257 (514)
T TIGR03319 243 TPEAVILSGFDPVRR 257 (514)
T ss_pred CCCeEEecCCchHHH
Confidence 577888999999884
No 102
>PRK10869 recombination and repair protein; Provisional
Probab=24.59 E-value=1.2e+03 Score=27.41 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043666 178 ELMDMMAMYQEGAYERLCRWVQAECRKL 205 (680)
Q Consensus 178 eiMe~~s~~~e~A~erL~~w~q~e~~~l 205 (680)
+.-+++++...+|-++|..=++.+++.|
T Consensus 359 ~~A~~LS~~R~~aA~~l~~~v~~~L~~L 386 (553)
T PRK10869 359 ETAQKLHQSRQRYAKELAQLITESMHEL 386 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445666777788888888888888776
No 103
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=24.48 E-value=3.3e+02 Score=24.91 Aligned_cols=47 Identities=26% Similarity=0.414 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHH
Q 043666 67 AAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQR 120 (680)
Q Consensus 67 ~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K 120 (680)
.+.++|..++.++..|......++..+.. ++++=..|+-+...+..+
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~-------l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQE-------LLEENARLRIENEHLRER 51 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666655 566666666666555444
No 104
>PLN02320 seryl-tRNA synthetase
Probab=24.44 E-value=3.1e+02 Score=31.94 Aligned_cols=63 Identities=13% Similarity=0.144 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhhcchHHHHHHHHHHHHHHHHHHHHH
Q 043666 62 LQASSAAQQALDQVEEEVNSLAECCDRIEKALNS--CNATTGNIIETTERLKRDLDVNTQRQEIV 124 (680)
Q Consensus 62 L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~--~~~~t~~ll~e~~~L~~~~~~l~~K~~ll 124 (680)
++++-.+.+....+...++.+..--..+.+++.. ...+...+.++++.|+++...++.+.+.+
T Consensus 92 vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~ 156 (502)
T PLN02320 92 LELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKL 156 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666666666643 22345678888888888888777765444
No 105
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=24.16 E-value=8.3e+02 Score=25.45 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=11.9
Q ss_pred HHHhhHHHHHHHHHHhhH
Q 043666 42 ARRNLRSTIEKRALSINL 59 (680)
Q Consensus 42 aRr~LR~~iE~~~l~~n~ 59 (680)
.|+.||+.|=+-.++.-+
T Consensus 108 vrkEl~nAlvRAGLktL~ 125 (290)
T COG4026 108 VRKELKNALVRAGLKTLQ 125 (290)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 677777777666665544
No 106
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=24.16 E-value=74 Score=29.80 Aligned_cols=72 Identities=7% Similarity=0.231 Sum_probs=18.0
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Q 043666 44 RNLRSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLD 115 (680)
Q Consensus 44 r~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~ 115 (680)
-.||.++..-.-..+.+.++--..=...+-.+.+.+..+.+.+++|+.-|...+.....+.+++...+++.+
T Consensus 29 e~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~ 100 (133)
T PF06148_consen 29 EDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIE 100 (133)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHHHHS-STTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777765555555677788888888888888888888777777776666666655544
No 107
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=24.09 E-value=3.5e+02 Score=23.13 Aligned_cols=30 Identities=17% Similarity=0.451 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 59 LDFLQASSAAQQALDQVEEEVNSLAECCDR 88 (680)
Q Consensus 59 ~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~ 88 (680)
.+|+++.+.+...|..|...|++|...-..
T Consensus 3 ~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~ 32 (103)
T PF00804_consen 3 PEFFDEVQEIREDIDKIKEKLNELRKLHKK 32 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777788888888877777777766543
No 108
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=24.06 E-value=1.8e+02 Score=30.12 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=41.8
Q ss_pred hhhcCCCChhhhhhccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccCCCHHHHHHhhc
Q 043666 611 LVLGSESSLPEFELLQVPKLRSEACIQVARSLAEAYEQIYQAIMDPKNGHPDPKSLARHPPDQIRTILG 679 (680)
Q Consensus 611 ~L~s~~~al~~l~~L~sp~l~~~i~~~~~~~~~~~Y~~i~~~v~dp~n~y~~~~~~l~~tp~qv~~lL~ 679 (680)
|+++.||+-++.-.=.|-++...+.-.....++.---..|..=. -.||+...++++..+|+|-+.+|-
T Consensus 36 Fv~s~pD~~Tq~fL~ns~~~s~n~f~ql~h~l~~sils~fms~T-dING~lgrGsMFifSe~QF~klL~ 103 (288)
T KOG3987|consen 36 FVPSEPDATTQSFLENSKALSANIFTQLWHALARSILSFFMSQT-DINGFLGRGSMFIFSEEQFRKLLV 103 (288)
T ss_pred hcccCCCccHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccccccccCceEEecHHHHHHHHh
Confidence 44566888766544444455555544444444322222222222 479999999999999999999874
No 109
>COG2841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.94 E-value=4.6e+02 Score=22.37 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchH-HHHHHHHHHHHHHHHHHHHHHHH
Q 043666 63 QASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNII-ETTERLKRDLDVNTQRQEIVSCF 127 (680)
Q Consensus 63 ~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll-~e~~~L~~~~~~l~~K~~ll~~F 127 (680)
.+|.....+|+.=.++.+.|-.-.+++..++..+...-..+. .++..|++|+ +.+|-++....
T Consensus 3 ~Efr~~is~Lk~~dahF~rLfd~hn~LDd~I~~~E~n~~~~s~~ev~~LKKqk--L~LKDEi~~~L 66 (72)
T COG2841 3 HEFRDLISKLKANDAHFARLFDKHNELDDRIKRAEGNRQPGSDAEVSNLKKQK--LQLKDEIASIL 66 (72)
T ss_pred hhHHHHHHHHhccchHHHHHHHHHhHHHHHHHHHhcCCCCCcHHHHHHHHHHH--HHhHHHHHHHH
Confidence 467777777777777777777777777777766555444443 6677787765 67777766544
No 110
>PF10303 DUF2408: Protein of unknown function (DUF2408); InterPro: IPR018810 This entry represents a family of proteins conserved in fungi whose function is unknown.
Probab=23.66 E-value=1.3e+02 Score=28.71 Aligned_cols=89 Identities=19% Similarity=0.185 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhhhhhhhcch------HHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCC--HHHHHhc---------
Q 043666 82 LAECCDRIEKALNSCNATTGNI------IETTERLKRDLDVNTQRQEIVSCFLRDY---QLS--NEEINAL--------- 141 (680)
Q Consensus 82 l~~~c~~m~~~L~~~~~~t~~l------l~e~~~L~~~~~~l~~K~~ll~~Fl~~F---~Ls--~~E~~~L--------- 141 (680)
+++..-.|...|.+.....+.- ..++..|+.+++.++.++..=..|...- .+. +.-+..|
T Consensus 12 i~ekLisIrR~L~~~~t~~k~~~~~~~~~~el~~lq~qL~eIe~~R~~DGKF~~~~~g~~~~~gQ~~l~~LLd~C~~li~ 91 (134)
T PF10303_consen 12 IYEKLISIRRSLLSLNTRSKFSDSSEESSSELKPLQEQLKEIESMRDVDGKFVSPDTGEVPPGGQAVLNGLLDDCFDLIE 91 (134)
T ss_pred HHHHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHHHHHHHhccCCCCeeCCCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444 8999999999999988873334444444 111 1111111
Q ss_pred ----cCC---CCChhHHHHHHHHHHHHHHHHHhhcc
Q 043666 142 ----RDE---DLDESFFKALAHVQEIHANCKVLLRT 170 (680)
Q Consensus 142 ----~~~---~Vd~~FF~aL~rv~~I~~~c~~LL~~ 170 (680)
..| .|++.|..+-+++..|+..-..|+=+
T Consensus 92 dl~~~~~~~~~~~~~l~~iY~~L~~ik~~LE~L~lT 127 (134)
T PF10303_consen 92 DLLERKGEEIEVDPSLQPIYDQLIDIKNTLENLLLT 127 (134)
T ss_pred HHHHhccccccccHHHHHHHHHHHHHHHHHHhhhhh
Confidence 125 78888888888888888887776643
No 111
>PF15469 Sec5: Exocyst complex component Sec5
Probab=23.61 E-value=6.9e+02 Score=24.36 Aligned_cols=102 Identities=11% Similarity=0.218 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Q 043666 62 LQASSAAQQALDQVEEEVNSLAE------CCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEIVSCFLRDYQLSN 135 (680)
Q Consensus 62 L~~f~~v~~~l~~l~~~v~~l~~------~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl~~F~Ls~ 135 (680)
...|-...+.|+.+..++..+.. .++++.+.+......+..+...+-.-+++...+..=..++..|.-=|.|+-
T Consensus 12 f~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~r~~flF~LP~ 91 (182)
T PF15469_consen 12 FDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQRNRFLFNLPS 91 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34566667778888888876664 488888888888888888888888888888888888899999999999999
Q ss_pred HHHHhccCCCCChhHHHHHHHHHHHHHHH
Q 043666 136 EEINALRDEDLDESFFKALAHVQEIHANC 164 (680)
Q Consensus 136 ~E~~~L~~~~Vd~~FF~aL~rv~~I~~~c 164 (680)
.-..+|..|+-+ .|..--.|++.+.++-
T Consensus 92 ~L~~~i~~~dy~-~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 92 NLRECIKKGDYD-QAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHHHHHcCcHH-HHHHHHHHHHHHHHHh
Confidence 999999877643 3344445555555554
No 112
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=23.52 E-value=4e+02 Score=30.96 Aligned_cols=67 Identities=13% Similarity=0.178 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 043666 65 SSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEIVSCFLRDY 131 (680)
Q Consensus 65 f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl~~F 131 (680)
|+.+.++++...+++..+.+-.+.-.+.+..-...++.|+.++..++++.+.+...++.+...+..+
T Consensus 200 y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~ 266 (596)
T KOG4360|consen 200 YGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAY 266 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777666666666666666666666667777778888888777777777666666665554
No 113
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=23.40 E-value=7.7e+02 Score=26.31 Aligned_cols=51 Identities=18% Similarity=0.345 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 76 EEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEIVSC 126 (680)
Q Consensus 76 ~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~ 126 (680)
...+..+..-+++++..+.....+-..|-.++++-+.+.+..+.|-+-|.+
T Consensus 168 ~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 168 KEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS 218 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555556666666666666666666666666666666666666555543
No 114
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=23.16 E-value=7.4e+02 Score=26.96 Aligned_cols=68 Identities=12% Similarity=0.270 Sum_probs=37.7
Q ss_pred HHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHH
Q 043666 42 ARRNLRSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRD 113 (680)
Q Consensus 42 aRr~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~ 113 (680)
....+..++..=..+.+..|++. .+.+..+...+..+++..+++.+.+..-......+...+.+..++
T Consensus 22 ~~~~l~~ql~~La~~~y~~fi~~----~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~ 89 (338)
T PF04124_consen 22 EIASLDAQLQSLAFRNYKTFIDN----AECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEE 89 (338)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554 555566666666666677766666655444444444444444333
No 115
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=23.00 E-value=1e+03 Score=26.94 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH
Q 043666 72 LDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEIVSCFLRDYQLSNEEI 138 (680)
Q Consensus 72 l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl~~F~Ls~~E~ 138 (680)
++.++...+.|......++.++... .....+...|+. +++.++.++..|+.+|+-.....
T Consensus 344 ~~~l~~~~~~L~~~~~~l~~~~~~~----~~~~~~l~~L~R---e~~~~r~~ye~lL~r~qe~~~~~ 403 (458)
T COG3206 344 LALLEQQEAALEKELAQLKGRLSKL----PKLQVQLRELER---EAEAARSLYETLLQRYQELSIQE 403 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc----hHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445556666666666666666542 223344445544 44788899999999998776666
No 116
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=22.99 E-value=3.1e+02 Score=29.84 Aligned_cols=29 Identities=17% Similarity=0.504 Sum_probs=15.6
Q ss_pred HHHHHHHhcccCCHHHHHhccCCC-CChhH
Q 043666 122 EIVSCFLRDYQLSNEEINALRDED-LDESF 150 (680)
Q Consensus 122 ~ll~~Fl~~F~Ls~~E~~~L~~~~-Vd~~F 150 (680)
+-......+|.......+.|..-. .|+.|
T Consensus 113 ~e~~sl~~q~~~~~~~L~~L~ktNv~n~~F 142 (314)
T PF04111_consen 113 EERDSLKNQYEYASNQLDRLRKTNVYNDTF 142 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHT--TTTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhcee
Confidence 334555566666677777777544 34444
No 117
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=22.94 E-value=6.1e+02 Score=24.02 Aligned_cols=57 Identities=11% Similarity=0.206 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHH
Q 043666 62 LQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNT 118 (680)
Q Consensus 62 L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~ 118 (680)
+..|+.+...+..-+..|..+.+.+...+..|...+.+.+.+-.+......=.+.+.
T Consensus 71 I~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~iL~ 127 (142)
T PF04048_consen 71 IGSYSQILSSISESQERIRELKESLQEAKSLLGCRREELKELWQRSQEYKEMIEILD 127 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999998888888877776666655554443
No 118
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=22.62 E-value=1.3e+03 Score=27.15 Aligned_cols=141 Identities=16% Similarity=0.220 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 043666 58 NLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNS-----CNATTGNIIETTERLKRDLDVNTQRQEIVSCFLRDYQ 132 (680)
Q Consensus 58 n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~-----~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl~~F~ 132 (680)
+..+-+.|.++...+......+.+.....++|.+.+.. .......-..+...|++|.+..+.=-+++..+.+=-+
T Consensus 31 ~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~eL~~~~~~l~~L~~L~~i~~ 110 (593)
T PF06248_consen 31 HSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRELEENEQLLEVLEQLQEIDE 110 (593)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444455555555555444433 1122223334444454444433333333322211100
Q ss_pred CCHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHhhccc--CcchH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 133 LSNEEINALRDEDLDESFFKALAHVQEIHANCKVLLRTH--HQRAG-------LELMDMMAMYQEGAYERLCRWVQAEC 202 (680)
Q Consensus 133 Ls~~E~~~L~~~~Vd~~FF~aL~rv~~I~~~c~~LL~~~--~q~aG-------leiMe~~s~~~e~A~erL~~w~q~e~ 202 (680)
+ ...+...--..+|-.|.+.+++++.....+=... +.++- ....+.+-..+...++|+..|=....
T Consensus 111 ~----l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L~~~L~~~w~~lv~~~~~~~ 185 (593)
T PF06248_consen 111 L----LEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENLQYQLSEEWERLVQWDSPSS 185 (593)
T ss_pred H----HHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhheeecCCCc
Confidence 0 0111111233578899999988888777652211 12222 22333344445566666666654443
No 119
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.36 E-value=1.1e+03 Score=26.15 Aligned_cols=91 Identities=19% Similarity=0.257 Sum_probs=47.8
Q ss_pred HHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHH
Q 043666 43 RRNLRSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQE 122 (680)
Q Consensus 43 Rr~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ 122 (680)
|..+-+.++-.+..--++-++......+.|++-++.|..-..-.+.|.++|. .+..+|+.+.+.+..|.+
T Consensus 208 rasvisa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLE----------qq~~~L~~niDIL~~k~~ 277 (365)
T KOG2391|consen 208 RASVISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLE----------QQLQSLQKNIDILKSKVR 277 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHH----------HHHHHHHhhhHHHHHHHH
Confidence 3344444444444444555555555556666666555555555555555544 344455555555555543
Q ss_pred HHHHHHhcccCCHHHHHhccCCCCChhHHHH
Q 043666 123 IVSCFLRDYQLSNEEINALRDEDLDESFFKA 153 (680)
Q Consensus 123 ll~~Fl~~F~Ls~~E~~~L~~~~Vd~~FF~a 153 (680)
. ..+....+..-+||+.|-..
T Consensus 278 e----------al~~~~n~~~~~~D~~~~~~ 298 (365)
T KOG2391|consen 278 E----------ALEKAENLEALDIDEAIECT 298 (365)
T ss_pred H----------HHhhhccCcCCCchhhhhcc
Confidence 3 23334446667788776533
No 120
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=22.13 E-value=2.5e+02 Score=24.23 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043666 66 SAAQQALDQVEEEVNSLAE 84 (680)
Q Consensus 66 ~~v~~~l~~l~~~v~~l~~ 84 (680)
..|..+...+++.|+.+..
T Consensus 14 k~vd~KVdaLq~~V~~l~~ 32 (75)
T PF05531_consen 14 KAVDDKVDALQTQVDDLES 32 (75)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333
No 121
>TIGR03517 GldM_gliding gliding motility-associated protein GldM. This protein family, GldM, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile. The best conserved region, toward the N-terminus, is centered on a highly hydrobobic probable transmembrane helix. Two paralogs are found in Cytophaga hutchinsonii.
Probab=22.06 E-value=7.9e+02 Score=28.82 Aligned_cols=117 Identities=16% Similarity=0.184 Sum_probs=63.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 043666 55 LSINLDFLQASSAAQQALDQVEEEVNSLAE-CCDRIEKALNSCNATTGNIIETTERLKRDLDVN-----TQRQEIVSCFL 128 (680)
Q Consensus 55 l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~-~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l-----~~K~~ll~~Fl 128 (680)
|....++|+.|+-+.+.|.+--+...+-|. .++.++.+....-+...++.+++.+++.....+ ++|+.++..--
T Consensus 26 LNvS~eVL~~F~~~n~sl~~s~~~~~~~N~~~~~~l~~k~~~~p~k~~~~~~~A~~vk~~S~~l~~yl~~LK~~i~~~a~ 105 (523)
T TIGR03517 26 LNVSSEVLEGFGLMNESLEAAVGNSEKYNNALLAELDKAVAKAPAKDKQWQESAQKVRTKSDSLYDYMNDLKEEIIRKAD 105 (523)
T ss_pred HccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456789999999999999886655554443 334444444444445555666666655554433 23333333211
Q ss_pred hcccCCHHHHHhccCCC-CChhHHHHHHHHHHHHHHHHHhhccc--CcchHHHHHHHHHHHHHHH
Q 043666 129 RDYQLSNEEINALRDED-LDESFFKALAHVQEIHANCKVLLRTH--HQRAGLELMDMMAMYQEGA 190 (680)
Q Consensus 129 ~~F~Ls~~E~~~L~~~~-Vd~~FF~aL~rv~~I~~~c~~LL~~~--~q~aGleiMe~~s~~~e~A 190 (680)
|+ -+-..|.++++-+ -...++... ....|.++++++++|.+..
T Consensus 106 ---------------g~~~~g~~~~~~d~~~----~~~~~~~~~~~~~~~G~~l~~~in~yr~~i 151 (523)
T TIGR03517 106 ---------------GEKEDGGPKGAKEKDD----LEAVMVGTLGPINGKGYELQASLNKYREDV 151 (523)
T ss_pred ---------------Cccccccccccccccc----HhHHhhhcCCCCCchHHHHHHHHHHHHHHH
Confidence 11 0001444444433 111222222 2567889999998886643
No 122
>PRK00106 hypothetical protein; Provisional
Probab=22.01 E-value=1.3e+03 Score=27.06 Aligned_cols=15 Identities=27% Similarity=0.580 Sum_probs=12.4
Q ss_pred CCCCccccccCcchh
Q 043666 262 LPRPIEVHAHDPLRY 276 (680)
Q Consensus 262 ~~rPIel~AhDP~RY 276 (680)
+|.-+.++..||+|-
T Consensus 264 tp~~v~lS~fdpvRR 278 (535)
T PRK00106 264 TPEVVVLSGFDPIRR 278 (535)
T ss_pred CCCeEEEeCCChHHH
Confidence 577888999999884
No 123
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=21.83 E-value=1e+03 Score=27.53 Aligned_cols=90 Identities=20% Similarity=0.288 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHH-------HHHH-HHHHHHHHHHHHHHHh-cccCCHH--HHHhccC
Q 043666 75 VEEEVNSLAECCDRIEKALNSCNATTGNIIETTER-------LKRD-LDVNTQRQEIVSCFLR-DYQLSNE--EINALRD 143 (680)
Q Consensus 75 l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~-------L~~~-~~~l~~K~~ll~~Fl~-~F~Ls~~--E~~~L~~ 143 (680)
+...++.|+.....++.+|...+.+-..|--+.++ ||++ ...++.|.+-+..+++ .=+|+.. |+..|..
T Consensus 388 ~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~ 467 (527)
T PF15066_consen 388 IEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQ 467 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45567778888888888887766665555544444 4444 4455666666655554 2245544 4444443
Q ss_pred --CCCChhHHHHHHHHHHHHHHH
Q 043666 144 --EDLDESFFKALAHVQEIHANC 164 (680)
Q Consensus 144 --~~Vd~~FF~aL~rv~~I~~~c 164 (680)
|.+-..-++||+++++=++.-
T Consensus 468 lkgelEkat~SALdlLkrEKe~~ 490 (527)
T PF15066_consen 468 LKGELEKATTSALDLLKREKETR 490 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 667677777777776665554
No 124
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=21.82 E-value=4.7e+02 Score=21.77 Aligned_cols=52 Identities=10% Similarity=0.185 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhcchHHHHHHHHHHHHHHH
Q 043666 67 AAQQALDQVEEEVNSLAECCDRIEKALNSCN-ATTGNIIETTERLKRDLDVNT 118 (680)
Q Consensus 67 ~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~-~~t~~ll~e~~~L~~~~~~l~ 118 (680)
+-...+..++..+++...++++|.-.+.... +.-..+..++...+.+...++
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk 74 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLK 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888889999999988887654 344456677777777766443
No 125
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=21.66 E-value=1.5e+03 Score=27.55 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=15.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHhh
Q 043666 146 LDESFFKALAHVQEIHANCKVLL 168 (680)
Q Consensus 146 Vd~~FF~aL~rv~~I~~~c~~LL 168 (680)
|--+.|.||..+++=.+-+...+
T Consensus 616 iKldLfsaLg~akrq~ei~~~~~ 638 (697)
T PF09726_consen 616 IKLDLFSALGDAKRQLEIAQGQL 638 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777776666655444
No 126
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=21.61 E-value=9.2e+02 Score=25.02 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=8.0
Q ss_pred HHHHhhHHHHHHHHH
Q 043666 41 HARRNLRSTIEKRAL 55 (680)
Q Consensus 41 ~aRr~LR~~iE~~~l 55 (680)
..+..|+..|+..+-
T Consensus 34 ~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 34 EENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555554
No 127
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=21.58 E-value=1e+03 Score=25.69 Aligned_cols=17 Identities=18% Similarity=0.630 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 043666 149 SFFKALAHVQEIHANCK 165 (680)
Q Consensus 149 ~FF~aL~rv~~I~~~c~ 165 (680)
++-..+..++++.+.|+
T Consensus 255 ~l~~eI~e~~~~~~~~r 271 (325)
T PF08317_consen 255 ELLAEIAEAEKIREECR 271 (325)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44455556666666665
No 128
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=21.51 E-value=4.3e+02 Score=22.80 Aligned_cols=38 Identities=29% Similarity=0.504 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHH
Q 043666 69 QQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIET 106 (680)
Q Consensus 69 ~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e 106 (680)
.+.++++...++.+..-.+.+.+.....-..+..++++
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~d 62 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLED 62 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433333333333
No 129
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=21.45 E-value=4.7e+02 Score=22.50 Aligned_cols=65 Identities=18% Similarity=0.268 Sum_probs=40.0
Q ss_pred HHHHHHHhhCCCchHHHHHHHHHHHHHHHH------HHHHHHHHHHhhcCCCCCCCCCCCchHHHHHHHHHHHHHHHhh
Q 043666 369 YSYTISDLLGRETALCNTLWVLKEAAQKTY------FDILKSRGEKLLRYPPLVAADLSPPTAVRDGVSVLLEIIETHN 441 (680)
Q Consensus 369 Y~~t~~k~i~~~s~L~~tl~~L~~~a~~~f------~~~l~~~~~~l~~~~~~~~~DL~PP~~l~~~l~~L~eil~~~~ 441 (680)
|..++..-+...+ ...|-.+.+++++.+ .+.++-|...+... ++..|+.+..++..|.|+|-.|+
T Consensus 4 Y~~lL~~yl~~~~--E~~L~~~~~~~r~~i~~~I~PEeIv~iH~~~v~~l------~~~~~~~v~~sld~LlEvm~~yg 74 (77)
T PF08673_consen 4 YKDLLREYLETQD--EQSLYQAQEFGRELIEKDISPEEIVEIHKSAVQEL------SPSLPEDVLDSLDFLLEVMIGYG 74 (77)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHH-------TTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH------ccccHHHHHHHHHHHHHHHHHcC
Confidence 5555555332111 344556666666665 55666777766655 22338889999999999998775
No 130
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=21.39 E-value=5.5e+02 Score=22.34 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=14.5
Q ss_pred CChhHHHHHHHHHHHHHHHHH
Q 043666 146 LDESFFKALAHVQEIHANCKV 166 (680)
Q Consensus 146 Vd~~FF~aL~rv~~I~~~c~~ 166 (680)
+..+|-.+|...+++...+..
T Consensus 76 L~~df~~~l~~fq~~q~~~~~ 96 (102)
T PF14523_consen 76 LSRDFKEALQEFQKAQRRYAE 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777777766653
No 131
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.98 E-value=6.9e+02 Score=23.36 Aligned_cols=49 Identities=12% Similarity=0.183 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043666 48 STIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSC 96 (680)
Q Consensus 48 ~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~ 96 (680)
..+|+++-+...++-+-=+.|.+++..-...++.|...+.++.++|...
T Consensus 28 ~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~~ 76 (128)
T PF06295_consen 28 AKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAKG 76 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666655556788889999999999999999999999764
No 132
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=20.91 E-value=5.2e+02 Score=21.92 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHH
Q 043666 63 QASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQR 120 (680)
Q Consensus 63 ~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K 120 (680)
+.|..+-.++...-+.++.|..-.+..+++-..-......+-.+...|+.+......|
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555555555444444445555666666666665555444
No 133
>PF15456 Uds1: Up-regulated During Septation
Probab=20.90 E-value=5.3e+02 Score=24.25 Aligned_cols=68 Identities=21% Similarity=0.302 Sum_probs=45.8
Q ss_pred hHHHHHHHHhhhhccCCCHHHHHhhHHHHHHHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 043666 22 PDLLASLKTLSTFYEENTPHARRNLRSTIEKRALSINLDFLQASSAAQ-------QALDQVEEEVNSLAECCDRIEKALN 94 (680)
Q Consensus 22 ~~~~~aL~~Ls~~~~~nt~~aRr~LR~~iE~~~l~~n~~~L~~f~~v~-------~~l~~l~~~v~~l~~~c~~m~~~L~ 94 (680)
.++..-+..|+.+.. ..|++|- +|..+.+....+-.-+.+-. +.+..-+..+...+..|++....|.
T Consensus 25 e~LKkEl~~L~~R~~----~lr~kl~--le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~ 98 (124)
T PF15456_consen 25 EELKKELRSLDSRLE----YLRRKLA--LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELW 98 (124)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHH--HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHH
Confidence 466666777777732 4677776 77777777777666655544 4566667777777777777776664
Q ss_pred h
Q 043666 95 S 95 (680)
Q Consensus 95 ~ 95 (680)
.
T Consensus 99 ~ 99 (124)
T PF15456_consen 99 K 99 (124)
T ss_pred H
Confidence 4
No 134
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.60 E-value=3.2e+02 Score=29.15 Aligned_cols=91 Identities=13% Similarity=0.224 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHh
Q 043666 61 FLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEIVSCFLRDYQLSNEEINA 140 (680)
Q Consensus 61 ~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl~~F~Ls~~E~~~ 140 (680)
++..+.+....+.+....+-.-+.+++ ..++|......+..++.++..+-.+...+.. +++...
T Consensus 29 ~i~~i~~~~~~l~r~~~~lgt~~ds~~-lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~---------------~~~~~~ 92 (269)
T KOG0811|consen 29 NIQRINQQVLSLLRFLNSLGTKSDSPE-LRDKLHQERLNANQLVKDTSALLKEIDTLRL---------------ESDLRQ 92 (269)
T ss_pred HHHHHhHHHHHHHHHHHHcCCccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------hhHHHH
Confidence 334444444455554444444455555 5555655555555555555555544433222 222233
Q ss_pred cc--CCCCChhHHHHHHHHHHHHHHHHHh
Q 043666 141 LR--DEDLDESFFKALAHVQEIHANCKVL 167 (680)
Q Consensus 141 L~--~~~Vd~~FF~aL~rv~~I~~~c~~L 167 (680)
+. -.++-++|+.+|+..+.++..|-.=
T Consensus 93 ~k~~~~kL~~ef~~~l~efq~vQrk~ae~ 121 (269)
T KOG0811|consen 93 LKIQLDKLVDEFSAALKEFQKVQRKSAER 121 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 32 3667889999999999999888633
No 135
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=20.52 E-value=2.3e+02 Score=29.81 Aligned_cols=49 Identities=22% Similarity=0.464 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043666 81 SLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEIVSCFLR 129 (680)
Q Consensus 81 ~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl~ 129 (680)
.|..+...++..|.........+...+..|++++..|..+++-|...+.
T Consensus 205 ~L~~~~~rL~~~l~~le~~~~~~~~~l~~l~~E~~~I~~re~elq~~l~ 253 (254)
T PF15458_consen 205 SLSECLERLRESLSSLEDSKSQLQQQLESLEKEKEEIEEREKELQELLK 253 (254)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566667777777776677777889999999999999999888877654
No 136
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.46 E-value=5.3e+02 Score=29.73 Aligned_cols=58 Identities=14% Similarity=0.125 Sum_probs=39.6
Q ss_pred CCh--HHHHHhccccCCCCcccCCCCCHHHHHHHHHHhHhhhhcCCCChhhhhhccChHHHHHHHHHHHHHHHHHHHH
Q 043666 573 GLL--PKMRHFRSKEVSLPLAEIEDTSPTSLSECLKAFFGLVLGSESSLPEFELLQVPKLRSEACIQVARSLAEAYEQ 648 (680)
Q Consensus 573 GL~--~~~~~~~~~~~~~~ls~~p~~~~~~l~~~l~~f~~~L~s~~~al~~l~~L~sp~l~~~i~~~~~~~~~~~Y~~ 648 (680)
++. ++|.++|-- +...-+.|+++-.+.... +-|| +.++|..++ +.++.|.+++.|||-
T Consensus 5 e~~e~e~Ya~LNlp---------kdAt~eeI~~AYrr~~~l--fHPD------kh~dpd~K~-~AE~~F~~i~~AyEV 64 (546)
T KOG0718|consen 5 ELDEIELYALLNLP---------KDATDEEIKKAYRRLSRL--FHPD------KHTDPDQKK-AAEEKFQRIQRAYEV 64 (546)
T ss_pred ccchhhHHHHhCCC---------cccCHHHHHHHHHHHHHh--cCCc------ccCChhHHH-HHHHHHHHHHHHHHH
Confidence 455 567777653 235667888888888754 3464 455666644 456899999999983
No 137
>KOG1458 consensus Fructose-1,6-bisphosphatase [Carbohydrate transport and metabolism]
Probab=20.39 E-value=40 Score=36.21 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=17.9
Q ss_pred cchhhhhHHHHHHHHhhhHH
Q 043666 273 PLRYVGDMLGWLHQALASER 292 (680)
Q Consensus 273 P~RYvgDmLAwvHqaiasE~ 292 (680)
..||||-|-|=||+++.-+.
T Consensus 252 saRYvGSMVaDvHRTllyGG 271 (343)
T KOG1458|consen 252 SARYVGSMVADVHRTLLYGG 271 (343)
T ss_pred ceeeeccchhhhhhhheeCc
Confidence 78999999999999998654
No 138
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=20.17 E-value=5.3e+02 Score=21.73 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=20.7
Q ss_pred HHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043666 43 RRNLRSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALN 94 (680)
Q Consensus 43 Rr~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~ 94 (680)
+++|+..++.---+....+-+.|+.++ .....|..|...|..+.+.+.
T Consensus 28 ~~~L~~~i~~~~~eLr~~V~~nY~~fI----~as~~I~~m~~~~~~l~~~l~ 75 (87)
T PF08700_consen 28 ENKLRQEIEEKDEELRKLVYENYRDFI----EASDEISSMENDLSELRNLLS 75 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433 223333344444444444443
No 139
>PRK11637 AmiB activator; Provisional
Probab=20.16 E-value=1.2e+03 Score=26.02 Aligned_cols=58 Identities=12% Similarity=0.171 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHH
Q 043666 63 QASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQR 120 (680)
Q Consensus 63 ~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K 120 (680)
++...+.+.+..+...+..++.....++..+.........+-.+++.++.+...++.+
T Consensus 61 ~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 61 KSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777788888888888888888888888888888888888888777766655
No 140
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=20.12 E-value=5.4e+02 Score=29.10 Aligned_cols=64 Identities=14% Similarity=0.177 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhh-hcchHHHHHHHHHHHHHHHHHHHHHH
Q 043666 62 LQASSAAQQALDQVEEEVNSLAECCDRIEKALNS---CNAT-TGNIIETTERLKRDLDVNTQRQEIVS 125 (680)
Q Consensus 62 L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~---~~~~-t~~ll~e~~~L~~~~~~l~~K~~ll~ 125 (680)
+++.-.+.++...+...++.|..--..+.+.+.. .... ...+.+++..|+++.+.++.+.+.+.
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 96 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALE 96 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444445555555444444444433 1122 45777888888888887777654443
Done!