Query 043666
Match_columns 680
No_of_seqs 143 out of 215
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 12:10:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043666.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043666hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pft_A Exocytosis protein; hel 99.9 1.6E-22 5.4E-27 231.0 27.8 452 128-679 6-564 (571)
2 2b1e_A Exocyst complex compone 99.1 1.1E-07 3.9E-12 108.2 33.4 484 129-679 17-560 (564)
3 3thf_A Protein shroom; coiled- 72.6 28 0.00095 33.6 10.9 97 43-140 45-149 (190)
4 1wt6_A Myotonin-protein kinase 71.5 20 0.00067 29.9 8.3 62 41-117 10-71 (81)
5 3plt_A Sphingolipid long chain 62.7 93 0.0032 31.0 12.8 94 2-95 16-122 (234)
6 3a7p_A Autophagy protein 16; c 62.6 25 0.00087 32.7 8.1 56 68-123 66-121 (152)
7 3hnw_A Uncharacterized protein 57.0 1.1E+02 0.0038 27.8 11.5 76 49-124 54-129 (138)
8 1naf_A ADP-ribosylation factor 48.8 66 0.0023 30.1 8.7 110 8-120 19-137 (158)
9 3oja_B Anopheles plasmodium-re 46.6 76 0.0026 35.2 10.5 27 88-114 548-574 (597)
10 3htk_A Structural maintenance 45.1 62 0.0021 24.8 6.7 49 67-115 2-50 (60)
11 2w6a_A ARF GTPase-activating p 42.0 70 0.0024 25.0 6.2 34 62-95 12-45 (63)
12 3na7_A HP0958; flagellar bioge 40.5 2E+02 0.007 28.5 11.6 16 148-163 111-126 (256)
13 3hnw_A Uncharacterized protein 38.8 2.1E+02 0.007 26.1 10.2 94 3-120 33-132 (138)
14 1oxz_A ADP-ribosylation factor 38.0 1E+02 0.0034 29.7 8.3 111 8-120 35-153 (186)
15 3o0z_A RHO-associated protein 33.6 3.1E+02 0.011 25.9 12.2 72 47-118 64-138 (168)
16 1nhl_A Synaptosomal-associated 33.5 1.5E+02 0.0053 22.3 8.4 51 42-94 2-52 (54)
17 2dnx_A Syntaxin-12; snare, HAB 33.1 1.5E+02 0.0051 26.5 8.2 20 146-165 96-115 (130)
18 3htk_A Structural maintenance 31.0 1.7E+02 0.0059 22.1 7.3 46 68-113 10-55 (60)
19 3l4q_C Phosphatidylinositol 3- 30.4 2.3E+02 0.0078 26.8 9.2 71 70-140 96-166 (170)
20 3ghg_A Fibrinogen alpha chain; 29.8 3.4E+02 0.012 30.1 11.5 70 49-119 114-190 (562)
21 3na7_A HP0958; flagellar bioge 29.5 4.2E+02 0.014 26.1 12.5 55 64-118 54-110 (256)
22 3zx6_A HAMP, methyl-accepting 28.7 3.3E+02 0.011 28.0 11.3 77 63-139 234-310 (341)
23 1ses_A Seryl-tRNA synthetase; 28.5 1.2E+02 0.0042 32.6 8.0 65 62-126 27-92 (421)
24 3oja_B Anopheles plasmodium-re 27.6 1.8E+02 0.006 32.2 9.5 17 42-58 478-494 (597)
25 2c0g_A ERP29 homolog, windbeut 27.3 2.4E+02 0.0084 27.9 9.5 109 6-128 122-234 (248)
26 2no2_A HIP-I, huntingtin-inter 27.1 3.1E+02 0.011 23.8 10.6 71 47-117 31-101 (107)
27 4dnd_A Syntaxin-10, SYN10; str 26.5 1.9E+02 0.0063 26.1 7.6 42 98-139 67-108 (130)
28 2lw1_A ABC transporter ATP-bin 26.4 2.8E+02 0.0094 23.0 8.9 58 70-127 22-85 (89)
29 1o3x_A ADP-ribosylation factor 26.2 1.3E+02 0.0045 27.5 6.6 110 8-120 10-128 (140)
30 1ldj_A Cullin homolog 1, CUL-1 25.5 8.2E+02 0.028 28.2 17.0 119 145-287 240-361 (760)
31 1wle_A Seryl-tRNA synthetase; 25.3 1.7E+02 0.0057 32.4 8.5 67 62-128 69-146 (501)
32 2xdj_A Uncharacterized protein 25.3 2.9E+02 0.01 22.9 8.0 29 68-96 25-53 (83)
33 1jcd_A Major outer membrane li 24.9 1.9E+02 0.0063 22.1 6.0 38 70-107 4-41 (52)
34 1deq_A Fibrinogen (alpha chain 24.4 6.6E+02 0.023 26.7 12.4 96 43-142 111-206 (390)
35 1n7s_C SNAP-25A; neuronal snar 23.9 3E+02 0.01 22.5 8.3 57 37-95 20-76 (79)
36 1qu7_A Methyl-accepting chemot 23.3 2.9E+02 0.0099 26.9 9.0 71 64-134 155-225 (227)
37 2dq0_A Seryl-tRNA synthetase; 22.4 2.8E+02 0.0097 30.1 9.5 69 61-129 29-100 (455)
38 3iv1_A Tumor susceptibility ge 21.8 3.4E+02 0.012 22.4 10.6 68 45-115 3-70 (78)
39 2j69_A Bacterial dynamin-like 21.4 7.9E+02 0.027 27.9 13.5 88 41-128 588-689 (695)
40 2iub_A CORA, divalent cation t 21.3 6.9E+02 0.024 25.8 13.2 117 72-200 190-312 (363)
41 3u1c_A Tropomyosin alpha-1 cha 20.8 3.9E+02 0.013 22.7 9.9 56 62-117 43-98 (101)
42 3mq9_A Bone marrow stromal ant 20.4 7.8E+02 0.027 26.0 13.0 47 53-99 394-440 (471)
43 3u59_A Tropomyosin beta chain; 20.3 4E+02 0.014 22.6 9.4 55 63-117 44-98 (101)
No 1
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=99.90 E-value=1.6e-22 Score=231.02 Aligned_cols=452 Identities=13% Similarity=0.133 Sum_probs=300.1
Q ss_pred HhcccCCHHHHHhccCCC-CC-hhHHHHHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043666 128 LRDYQLSNEEINALRDED-LD-ESFFKALAHVQEIHANCKVLLRTHHQRAGLELMDMMAMYQEGAYERLCRWVQAECRKL 205 (680)
Q Consensus 128 l~~F~Ls~~E~~~L~~~~-Vd-~~FF~aL~rv~~I~~~c~~LL~~~~q~aGleiMe~~s~~~e~A~erL~~w~q~e~~~l 205 (680)
+.+|..+.+++..|..|| .+ +.|.++++++++..+.-.. ++...+ -+..+...++.|..||-.-+..-+..-
T Consensus 6 ~~~~d~~~~~e~~i~~gp~~~l~~yL~av~~l~~a~~~~~~----~~~~s~--~l~~~~~Ll~~a~~~Le~eF~~lL~~~ 79 (571)
T 2pft_A 6 ISYYHVASDTEKIIREGPTGRLEEYLGSMAKIQKAVEYFQD----NSPDSP--ELNKVKLLFERGKESLESEFRSLMTRH 79 (571)
T ss_dssp STHHHHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHH----HSTTCH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccchhhhhhhhcCcHhhHHHHHHHHHHHHHHHHHHHh----cCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555666777788777 33 5999999999887554332 122222 166777778888777655444322110
Q ss_pred c--------------C------------CCCccchHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHh----
Q 043666 206 G--------------D------------TENPEVGELLKTAVRCLKERPVLFKYCAEEVANMRHNALFRRFLSALT---- 255 (680)
Q Consensus 206 ~--------------~------------~~~~e~~~~l~~al~~L~~rp~lf~~~ld~~a~~R~~~L~~~F~~aLt---- 255 (680)
. + .-.|++.+.|+....++..++- +++|++.|+..|+..|.+.+ .+|+
T Consensus 80 ~~~~~p~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Ia~~m~~~g~-~~~~~~~Y~~~R~~~l~~sL-~~L~~~~~ 157 (571)
T 2pft_A 80 SKVVSPVLLLDLISADDELEVQEDVVLEHLPESVLRDVVRISRWLVEYGR-NQDFMNVYYQIRSSQLDRSI-KGLKEHFR 157 (571)
T ss_dssp CCCCCHHHHHHHHHHTCCCC--------SSCHHHHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred CcCCChHHHHhccccccccCccccccccCCCHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 0 0 0123444667777777777765 79999999999999998888 7775
Q ss_pred --cCCCC------------C--CCCCccccc-cCcchhhhhHHHHHHHH------hhhHHHHHHhhcCCCCCCCCccccc
Q 043666 256 --RGGPG------------G--LPRPIEVHA-HDPLRYVGDMLGWLHQA------LASERELVLGLLDPDVGDTGLTASQ 312 (680)
Q Consensus 256 --~g~~~------------g--~~rPIel~A-hDP~RYvgDmLAwvHqa------iasE~Efl~sLF~~~~~~~~~~~~~ 312 (680)
+||++ | .++|+++|+ +|| |.++|-.|+|.+ +++|++++..+|..+
T Consensus 158 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~--~~~~i~~wi~~~~~~~~l~~~Er~L~~~vf~~~---------- 225 (571)
T 2pft_A 158 KSSSSSGVPYSPAIPNKRKDTPTKKPIKRPGRDDM--LDVETDAYIHCVSAFVKLAQSEYRLLMEIIPEH---------- 225 (571)
T ss_dssp HC-----------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH----------
T ss_pred hccccccccccccccccccccccccccccccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc----------
Confidence 23331 2 368899985 888 889999999998 999999999999432
Q ss_pred ccccCCCCCCCcchHHHHHHHHhhhccchh----HHHHHHHhh-cCcch--HHHHHHHhHHHHHHHHHHHhh-------C
Q 043666 313 FSKSQNGSGKTDSDLTFVLDRIFEGVCRPF----KVRVEQVLQ-SQPSL--IISYKLSNTLEFYSYTISDLL-------G 378 (680)
Q Consensus 313 ~~~~~~~~~~~~~~i~~lld~i~~gl~rpl----k~RvEqvl~-s~~~~--i~~yki~nLL~fY~~t~~k~i-------~ 378 (680)
.-+.+|.++|+|. ..+.|+|.. ....+ -..|++.+|+.+|.. +.++. +
T Consensus 226 -----------------~~~~~F~~i~~~~~~~ll~f~e~v~~~~kr~~~~~~~~~~l~l~~~l~~-l~~l~p~~~~~f~ 287 (571)
T 2pft_A 226 -----------------HQKKTFDSLIQDALDGLMLEGENIVSAARKAIIRHDFSTVLTVFPILRH-LKQTKPEFDQVLQ 287 (571)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTHHHHHHH-HHHHHHHHHHHTT
T ss_pred -----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhHHHHHHHHHHHH-HHHHHHHHHHHHc
Confidence 2356788888875 888999874 22111 234555566666654 33322 2
Q ss_pred -C----CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCCCCCchHHHHHHHHHHHHHHHhhcCCCCC---
Q 043666 379 -R----ETALCNTLWVLKEAAQKTYFDILKSRGEKLLRYP---PLVAADLSPPTAVRDGVSVLLEIIETHNSTMVPV--- 447 (680)
Q Consensus 379 -~----~s~L~~tl~~L~~~a~~~f~~~l~~~~~~l~~~~---~~~~~DL~PP~~l~~~l~~L~eil~~~~~s~~~~--- 447 (680)
. .+.+..+++.|.+.+.+.|.+..+ .+.+.+ .++|.|-.+++.....++.|+.+++ |..++...
T Consensus 288 g~~~~~~~~~~~~l~~L~~~~~~~f~ef~~----~i~~~~~s~~~vp~dg~Vh~lT~~vmnyl~~L~~-y~~~l~~il~~ 362 (571)
T 2pft_A 288 GTAASTKNKLPGLITSMETIGAKALEDFAD----NIKNDPDKEYNMPKDGTVHELTSNAILFLQQLLD-FQETAGAMLAS 362 (571)
T ss_dssp TSCHHHHTHHHHHHHHHHHHHHHHHHHHHH----HHHHCCCSGGGSCTTCCCCHHHHHHHHHHHHHHH-THHHHHHHHHT
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccccCCCCCCCCccchHHHHHHHHHHHHHh-hHHHHHHHHhc
Confidence 2 235778889999999999886663 333332 3456799999999999999999987 65433111
Q ss_pred -C-----------CCCCChHHHHHHhhhHHHHHHHHHHHhccCCCCCCCccccccCCCCCCccchhhhhhcCCCCCCCCC
Q 043666 448 -S-----------RETPDFNLVISALLDPIIQMCEQAAEAHKSKGAGHSSRRRLSSDSGNVSKSSVDAILSNSSSTPSSQ 515 (680)
Q Consensus 448 -~-----------~~~~~f~~vl~~~ldPli~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (680)
. +....|...+..+++++..+++..++..+.+
T Consensus 363 ~~~~~~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~ksk~y~d~------------------------------------ 406 (571)
T 2pft_A 363 QETSSSATSYSSEFSKRLLSTYICKVLGNLQLNLLSKSKVYEDP------------------------------------ 406 (571)
T ss_dssp TC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSH------------------------------------
T ss_pred cCCCcccccCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhCCch------------------------------------
Confidence 0 0123577899999999999999888776322
Q ss_pred CCCCcchHHHHhhHHHHhhccccchhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhccccCCC
Q 043666 516 SNETPSKIFLINCLCAIQQPLIGHEVA-------AEYVKNLGSMIDNHLRILVDKEVDTILRRCGLLPKMRHFRSKEVSL 588 (680)
Q Consensus 516 ~~~~~~~i~~iNcl~~i~s~L~~~~f~-------~~~~~~L~~~i~~~~~~L~~~q~~~lL~~~GL~~~~~~~~~~~~~~ 588 (680)
..+.||++||+.+|...+...+.. .+++..+..+++.+++. . +.+..+++..+...+...
T Consensus 407 ---~l~~iFLmNN~~yI~~~v~~s~l~~llg~~~~~~~~~~~~~i~~~~~~--------Y--~~sW~~v~~~L~~~~~~~ 473 (571)
T 2pft_A 407 ---ALSAIFLHNNYNYILKSLEKSELIQLVAVTQKTAERSYREHIEQQIQT--------Y--QRSWLKVTDYIAEKNLPV 473 (571)
T ss_dssp ---HHHHHHHHHHHHHHHTTTTTSTHHHHHHTTCTTHHHHHHHHHHHHHHH--------H--HGGGHHHHTTTSGGGSCS
T ss_pred ---HHHHHHHHhhHHHHHHHHhccchHHHhCcchhHHHHHHHHHHHHHHHH--------H--HHHHHHHHHHhhhccCCc
Confidence 127899999999999999886642 34444455555544442 2 447778777776522111
Q ss_pred Cccc--CCCCCHHHHHHHHHHhHhhhhcCCCChhhh------hhccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 043666 589 PLAE--IEDTSPTSLSECLKAFFGLVLGSESSLPEF------ELLQVPKLRSEACIQVARSLAEAYEQIYQAIMDPKNGH 660 (680)
Q Consensus 589 ~ls~--~p~~~~~~l~~~l~~f~~~L~s~~~al~~l------~~L~sp~l~~~i~~~~~~~~~~~Y~~i~~~v~dp~n~y 660 (680)
+.+. .++.+.+.|++.++.|...+ .++ -.+.+|.+|+.++..+.+.+.-+|+..|++..++ +++
T Consensus 474 ~~~g~~ls~~~r~~iKe~fk~Fn~~F-------ee~~~~q~~w~VpD~~LR~~Lr~~i~~~v~paY~~F~~r~~~~-~~~ 545 (571)
T 2pft_A 474 FQPGVKLRDKERQMIKERFKGFNDGL-------EELCKIQKVWAIPDTEQRDKIRQAQKDIVKETYGAFLHRYGSV-PFT 545 (571)
T ss_dssp SCCCSCCCHHHHHHHHHHHHHHHHHH-------HHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CCC
T ss_pred CCCCCCcCcccHHHHHHHHHHHHHHH-------HHHHHhCCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-ccc
Confidence 1111 23345678888888886532 222 2578999999999999999999999999999995 777
Q ss_pred CCCCcccCCCHHHHHHhhc
Q 043666 661 PDPKSLARHPPDQIRTILG 679 (680)
Q Consensus 661 ~~~~~~l~~tp~qv~~lL~ 679 (680)
.+++..++||||+|.++|+
T Consensus 546 k~~~KyiKytpe~le~~L~ 564 (571)
T 2pft_A 546 KNPEKYIKYRVEQVGDMID 564 (571)
T ss_dssp SCHHHHCCCCHHHHHHHHH
T ss_pred CCCCCccccCHHHHHHHHH
Confidence 8888899999999999875
No 2
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=99.09 E-value=1.1e-07 Score=108.24 Aligned_cols=484 Identities=13% Similarity=0.119 Sum_probs=261.7
Q ss_pred hcccCCHHHHHhccCCC--CC-hhHHHHHHHHHHHHHHHHHh-hcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043666 129 RDYQLSNEEINALRDED--LD-ESFFKALAHVQEIHANCKVL-LRTHHQRAGLELMDMMAMYQEGAYERLCRWVQAECRK 204 (680)
Q Consensus 129 ~~F~Ls~~E~~~L~~~~--Vd-~~FF~aL~rv~~I~~~c~~L-L~~~~q~aGleiMe~~s~~~e~A~erL~~w~q~e~~~ 204 (680)
+.|.-...++.+|+.|| ++ +.|.++|+|+++..++-+.- +..+++.--..++..+..++++|..+|-.+...-++.
T Consensus 17 ~~~~~~~~~e~iI~~Gp~~~~l~~Yl~al~rl~~al~~~~~~n~~s~e~~~f~g~l~~~~~L~~~g~~~L~~~F~~lL~~ 96 (564)
T 2b1e_A 17 DLANEASKYEIILQKGINQVGLKQYTQVVHKLDDMLEDIQSGQANREENSEFHGILTHLEQLIKRSEAQLRVYFISILNS 96 (564)
T ss_dssp HHHHHHHHHHHHHHTCHHHHCHHHHHHHHHHHHHHHHHHHC----CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333445678888887 44 69999999999988876631 1111111223489999999999999998888877663
Q ss_pred hcCCCC-----------cc----chHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC----CC
Q 043666 205 LGDTEN-----------PE----VGELLKTAVRCLKERPVLFKYCAEEVANMRHNALFRRFLSALTRGGPGGLP----RP 265 (680)
Q Consensus 205 l~~~~~-----------~e----~~~~l~~al~~L~~rp~lf~~~ld~~a~~R~~~L~~~F~~aLt~g~~~g~~----rP 265 (680)
...-. |. ...-|+.-..++... .+-++|++.|++.|+..|...+ ..|..-... .. -|
T Consensus 97 -s~p~~p~~~i~k~~p~p~l~~~~l~~L~~Ia~~m~~~-g~~~~~~~iY~~~R~~~l~~sL-~~L~~~~k~-~~~~~~~~ 172 (564)
T 2b1e_A 97 -IKPFDPQINITKKMPFPYYEDQQLGALSWILDYFHGN-SEGSIIQDILVGERSKLILKCM-AFLEPFAKE-ISTAKNAP 172 (564)
T ss_dssp -SCCCCHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHH-TTTSTTCC----------
T ss_pred -CCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHH-HHhhhhccc-cccccCCc
Confidence 11111 11 112233333333333 3447899999999999887773 334211110 00 12
Q ss_pred ccccccCcchhhhhHHHHHHHHhhhHHHHHHhhcCCCCCCCCcccccccccCCCCCCCcchHHHHHHHHhhhccchhHHH
Q 043666 266 IEVHAHDPLRYVGDMLGWLHQALASERELVLGLLDPDVGDTGLTASQFSKSQNGSGKTDSDLTFVLDRIFEGVCRPFKVR 345 (680)
Q Consensus 266 Iel~AhDP~RYvgDmLAwvHqaiasE~Efl~sLF~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lld~i~~gl~rplk~R 345 (680)
-+--.+-=.+|+--| +..+.+|+.++..+|...... .......+....+..+++-++ .
T Consensus 173 ~e~~~~~i~~~~~a~----~~l~~~E~~L~~~vf~~~~~~-----------------~~~~f~~i~~~~l~~~~~~l~-~ 230 (564)
T 2b1e_A 173 YEKGSSGMNSYTEAL----LGFIANEKSLVDDLYSQYTES-----------------KPHVLSQILSPLISAYAKLFG-A 230 (564)
T ss_dssp ---CCSTHHHHHHHH----HHHHHHHHHHHHHHSCTTCTT-----------------HHHHHHHHHHHHHHHHHHHHH-H
T ss_pred hhhhccHHHHHHHHH----HHHHHHHHHHHHHHcCCcchh-----------------hHHHHHHHHHHHHHHHHHHHH-H
Confidence 221111112333332 568899999999999652100 011223333333333334444 3
Q ss_pred HHHHhhcCc--chHHHHHHHhHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 043666 346 VEQVLQSQP--SLIISYKLSNTLEFYSYTISDLLG-RETALCNTLWVLKEAAQKTYFDILKSRGEKLLRYPPLVAADLSP 422 (680)
Q Consensus 346 vEqvl~s~~--~~i~~yki~nLL~fY~~t~~k~i~-~~s~L~~tl~~L~~~a~~~f~~~l~~~~~~l~~~~~~~~~DL~P 422 (680)
...+++.++ +...+|.|+..|.=-...|...=+ ....+...+..|.+.+...|.+....--..-. ..+..|.|=..
T Consensus 231 ~~~~~k~~~~~~~f~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~ef~~~i~~~~~-~~~~~p~dG~V 309 (564)
T 2b1e_A 231 NLKIVRSNLENFGFFSFELVESINDVKKSLRGKELQNYNLLQDCTQEVRQVTQSLFRDAIDRIIKKAN-SISTIPSNNGV 309 (564)
T ss_dssp HHHCCC-----CCTHHHHHHHHHHHHHHHTTTCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSCSCCTTCCC
T ss_pred HHHHHhcChhhcchhHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCCCCCcc
Confidence 444444443 556667777766544444442111 11467888999999999988776653211111 11232467777
Q ss_pred chHHHHHHHHHHHHHHHhhc---CC--------CC-C--------------C-CCCCChHHHHHHhhhHHHHHHHHHHHh
Q 043666 423 PTAVRDGVSVLLEIIETHNS---TM--------VP-V--------------S-RETPDFNLVISALLDPIIQMCEQAAEA 475 (680)
Q Consensus 423 P~~l~~~l~~L~eil~~~~~---s~--------~~-~--------------~-~~~~~f~~vl~~~ldPli~~~~~~a~~ 475 (680)
++.....++.|+-+.+--++ -+ .+ . + +....|...+..+++=++.+.+.-|..
T Consensus 310 h~lT~~vmnyl~~l~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~i~~L~~~Le~ka~~ 389 (564)
T 2b1e_A 310 TEATVDTMSRLRKFSEYKNGCLGAMDNITRENWLPSNYKEKEYTLQNEALNWEDHNVLLSCFISDCIDTLAVNLERKAQI 389 (564)
T ss_dssp CHHHHHHHHHHHHHGGGHHHHHHHTTTCCGGGTSCTTCCGGGSCCCC----CSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCCcccccccccccccccccCCCccchHHHHHHHHHHHHHHHHHHHhhc
Confidence 77777777777665542111 00 00 0 0 001124445556666666665555433
Q ss_pred ccCCCCCCCccccccCCCCCCccchhhhhhcCCCCCCCCCCCCCcchHHHHhhHHHHhhccccchh----hHHHHHHHHH
Q 043666 476 HKSKGAGHSSRRRLSSDSGNVSKSSVDAILSNSSSTPSSQSNETPSKIFLINCLCAIQQPLIGHEV----AAEYVKNLGS 551 (680)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iNcl~~i~s~L~~~~f----~~~~~~~L~~ 551 (680)
+..++- .+|... +++... -..-...+|++|.+.+|...+..-+. .+++...+..
T Consensus 390 ~~~~~~--------~~~l~~------------~~ss~~--~~d~~l~~FllNN~~yI~~~v~~SeL~~lLg~~~~~~~~~ 447 (564)
T 2b1e_A 390 ALMPNQ--------EPDVAN------------PNSSKN--KHKQRIGFFILMNLTLVEQIVEKSELNLMLAGEGHSRLER 447 (564)
T ss_dssp HHCTTS--------CCCCSC------------TTCSSC--TTHHHHHHHHHHHHHHHHHHHHTSTHHHHTTTHHHHHHHH
T ss_pred cccccc--------cccccc------------chhhhh--cCHHHHHHHHHHhHHHHHHHHhhhhhHhHhcHHHHHHHHH
Confidence 211100 001100 000000 00012568999999999888765431 2334443333
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChHHHHHhccccCCCCcccCCCCCHHHHHHHHHHhHhhhhcCCCChhh---hhhccCh
Q 043666 552 MIDNHLRILVDKEVDTILRRCGLLPKMRHFRSKEVSLPLAEIEDTSPTSLSECLKAFFGLVLGSESSLPE---FELLQVP 628 (680)
Q Consensus 552 ~i~~~~~~L~~~q~~~lL~~~GL~~~~~~~~~~~~~~~ls~~p~~~~~~l~~~l~~f~~~L~s~~~al~~---l~~L~sp 628 (680)
.++.+ ..+....+| ++...+...+...+-.. .+.+.+.+++-++.|...+ +-+=. --.+.+|
T Consensus 448 ~~~~~--------~~y~~~sW~--~v~~~L~~~~~~~~~~k-s~~~k~~iKe~fk~FN~~F----ee~~~~q~~w~vpD~ 512 (564)
T 2b1e_A 448 LKKRY--------ISYMVSDWR--DLTANLMDSVFIDSSGK-KSKDKEQIKEKFRKFNEGF----EDLVSKTKQYKLSDP 512 (564)
T ss_dssp HHHHH--------HHHHHHHHH--HHHHHHHHHHHHTCSSS-CCCCHHHHHHHHHHHHHHH----HHHHHHHTTCCCCCH
T ss_pred HHHHH--------HHHHHHHHH--HHHHHHhccccCCCCCC-ccccHHHHHHHHHHHHHHH----HHHHHhcCcccCcCH
Confidence 33333 334444433 44444332110000001 3467788888888887542 11111 1157799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccCCCHHHHHHhhc
Q 043666 629 KLRSEACIQVARSLAEAYEQIYQAIMDPKNGHPDPKSLARHPPDQIRTILG 679 (680)
Q Consensus 629 ~l~~~i~~~~~~~~~~~Y~~i~~~v~dp~n~y~~~~~~l~~tp~qv~~lL~ 679 (680)
.+|+.++..+.+.+.-+|+.-|++..+- -.+++--+++|||+|..+|+
T Consensus 513 ~LR~~Lr~~i~~~v~P~Y~~F~~ry~~~---~k~~~KyiKytpe~le~~l~ 560 (564)
T 2b1e_A 513 SLKVTLKSEIISLVMPMYERFYSRYKDS---FKNPRKHIKYTPDELTTVLN 560 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGG---SSSGGGTCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc---cCCCCCcccCCHHHHHHHHH
Confidence 9999999999999999999999999761 13456679999999999874
No 3
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=72.62 E-value=28 Score=33.61 Aligned_cols=97 Identities=13% Similarity=0.129 Sum_probs=70.7
Q ss_pred HHhhHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHH-------
Q 043666 43 RRNLRSTIEKRALS-INLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDL------- 114 (680)
Q Consensus 43 Rr~LR~~iE~~~l~-~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~------- 114 (680)
-..|..+||.-+-. +--.-++-|+..+..|++|-+-+-.|.+-...+++.|.....+...+.++-+.|..|.
T Consensus 45 N~~lG~~vea~V~~~c~P~E~eKy~~FigDLekVv~LLLsLs~RLaRvenaL~~~~~Er~sL~~K~~~L~~Q~EDAkeLK 124 (190)
T 3thf_A 45 NDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITSLLLSLSERLAQTESSLETRQQERGALESKRDLLYEQMEEAQRLK 124 (190)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHccChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666655433 3445567788888888888888888888888888888776666667777666666654
Q ss_pred HHHHHHHHHHHHHHhcccCCHHHHHh
Q 043666 115 DVNTQRQEIVSCFLRDYQLSNEEINA 140 (680)
Q Consensus 115 ~~l~~K~~ll~~Fl~~F~Ls~~E~~~ 140 (680)
+.+..|+..+..|+.+| ||+++.+-
T Consensus 125 e~ldRRe~~V~~iL~~~-L~~eql~D 149 (190)
T 3thf_A 125 SDIERRGVSIAGLLAKN-LSADMCAD 149 (190)
T ss_dssp HHHHHHHHHHHHHHHHH-SCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-CCHHHHHH
Confidence 44567788899999998 88887653
No 4
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=71.55 E-value=20 Score=29.92 Aligned_cols=62 Identities=13% Similarity=0.276 Sum_probs=47.6
Q ss_pred HHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHH
Q 043666 41 HARRNLRSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVN 117 (680)
Q Consensus 41 ~aRr~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l 117 (680)
.+|++|.+.+|.+... =..|+..+.+........+.+|..+......|..++..|+.+.+.+
T Consensus 10 ~~~leLQSALeaEIqA---------------KQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 10 VTLRELQEALEEEVLT---------------RQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp CCHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999998887542 2345556666777777778889888889999999999998887753
No 5
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=62.66 E-value=93 Score=31.01 Aligned_cols=94 Identities=15% Similarity=0.213 Sum_probs=53.0
Q ss_pred CCchhHHHHHHHHhccC------CCC--hHHHHHHHHhhhhccCCCHHH-----HHhhHHHHHHHHHHhhHHHHHHHHHH
Q 043666 2 ALAPGLSRKLKKVLESR------TET--PDLLASLKTLSTFYEENTPHA-----RRNLRSTIEKRALSINLDFLQASSAA 68 (680)
Q Consensus 2 ~~a~~l~~k~~kvL~~~------~~~--~~~~~aL~~Ls~~~~~nt~~a-----Rr~LR~~iE~~~l~~n~~~L~~f~~v 68 (680)
+++|-++||+++++.+- ++. .|.+.+=+.|+..+..++..- |=..=..--.++.+....-+++|+-.
T Consensus 16 ~~~pe~sr~L~~LIk~EK~vi~s~e~~are~~~~A~~Ls~WG~~edddl~DIsdklgvLl~e~ge~e~~~a~~~d~yR~~ 95 (234)
T 3plt_A 16 NFGPELARKLSQLVKTEKGVLRAMEVVASERREAAKQLSLWGADNDDDVSDVTDKLGVLIYELGELQDQFIDKYDQYRVT 95 (234)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999988552 222 566666677777777665432 11111122223333333444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043666 69 QQALDQVEEEVNSLAECCDRIEKALNS 95 (680)
Q Consensus 69 ~~~l~~l~~~v~~l~~~c~~m~~~L~~ 95 (680)
.+.|...+..|+.....=+.+.+++..
T Consensus 96 LK~IR~~E~svqp~R~~R~~l~~~I~k 122 (234)
T 3plt_A 96 LKSIRNIEASVQPSRDRKEKITDEIAH 122 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 566666666666666666666666644
No 6
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=62.60 E-value=25 Score=32.72 Aligned_cols=56 Identities=14% Similarity=0.087 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHH
Q 043666 68 AQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEI 123 (680)
Q Consensus 68 v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~l 123 (680)
....+..++..+..+...|.+....+.........+-++...|+-+...++.|.+-
T Consensus 66 ~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~k 121 (152)
T 3a7p_A 66 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSD 121 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888888888888888888888888888888877433
No 7
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=56.96 E-value=1.1e+02 Score=27.84 Aligned_cols=76 Identities=11% Similarity=0.127 Sum_probs=56.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHH
Q 043666 49 TIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEIV 124 (680)
Q Consensus 49 ~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll 124 (680)
+.++-.+-.--.+.+++-...+..+.+..++..+..-..+++..|...+-....+-.+...|+++...++.+..-+
T Consensus 54 ~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 54 SAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777778888888888888888888888888888887777777777777777777777666654433
No 8
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=48.76 E-value=66 Score=30.14 Aligned_cols=110 Identities=18% Similarity=0.258 Sum_probs=59.3
Q ss_pred HHHHHHHhcc-CCCChHHHHH---HHHhhhhccCCCHHHHHhhHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 8 SRKLKKVLES-RTETPDLLAS---LKTLSTFYEENTPHARRNLRSTIEK--RALSINLDFLQASSAAQQALDQVEEEVNS 81 (680)
Q Consensus 8 ~~k~~kvL~~-~~~~~~~~~a---L~~Ls~~~~~nt~~aRr~LR~~iE~--~~l~~n~~~L~~f~~v~~~l~~l~~~v~~ 81 (680)
|.|++++|.. +.+ |+++| ++....+ .+..++-..+++++||. .-.++=.++|..|.|=...-..=...+.+
T Consensus 19 s~~L~~Lirs~~Pe--DL~~AN~LiK~m~~~-d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~e 95 (158)
T 1naf_A 19 SKMLARLLKSSHPE--DLRAANKLIKEMVQE-DQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKE 95 (158)
T ss_dssp HHHHHHHHSSCSTT--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHH
T ss_pred HHHHHHHHhcCChh--hHHHHHHHHHHHhcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHH
Confidence 6788898844 333 45555 3444442 23334556666666553 22333344454443321110000245667
Q ss_pred HHHHHHHHHHHHhhhhhhh---cchHHHHHHHHHHHHHHHHH
Q 043666 82 LAECCDRIEKALNSCNATT---GNIIETTERLKRDLDVNTQR 120 (680)
Q Consensus 82 l~~~c~~m~~~L~~~~~~t---~~ll~e~~~L~~~~~~l~~K 120 (680)
|.+.|..|+.++..--.++ .+++.++=.+..+...+=.|
T Consensus 96 L~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~ND~Ln~vl~k 137 (158)
T 1naf_A 96 LYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINL 137 (158)
T ss_dssp HHHHHHTHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHHHH
Confidence 8888888888886644333 34777777777776655555
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=46.65 E-value=76 Score=35.20 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=10.4
Q ss_pred HHHHHHhhhhhhhcchHHHHHHHHHHH
Q 043666 88 RIEKALNSCNATTGNIIETTERLKRDL 114 (680)
Q Consensus 88 ~m~~~L~~~~~~t~~ll~e~~~L~~~~ 114 (680)
+|+.++...+.....+-+++..++++.
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 333333333333333333433333333
No 10
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=45.11 E-value=62 Score=24.75 Aligned_cols=49 Identities=14% Similarity=0.265 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Q 043666 67 AAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLD 115 (680)
Q Consensus 67 ~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~ 115 (680)
|+..++..++..+..++.-+......+...+.....+.+..+..+.+..
T Consensus 2 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~ 50 (60)
T 3htk_A 2 PFANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVI 50 (60)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777777777777777776666666555555555555544
No 11
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=41.96 E-value=70 Score=25.02 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043666 62 LQASSAAQQALDQVEEEVNSLAECCDRIEKALNS 95 (680)
Q Consensus 62 L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~ 95 (680)
+++|-+|.+.|..-++.|+.|-+....+.+.|.-
T Consensus 12 ~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~ 45 (63)
T 2w6a_A 12 LQEYLELKKALATSEAKVQQLMKVNSSLSDELRK 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHH
Confidence 6789999999999999998888777777766554
No 12
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=40.53 E-value=2e+02 Score=28.47 Aligned_cols=16 Identities=0% Similarity=-0.012 Sum_probs=6.7
Q ss_pred hhHHHHHHHHHHHHHH
Q 043666 148 ESFFKALAHVQEIHAN 163 (680)
Q Consensus 148 ~~FF~aL~rv~~I~~~ 163 (680)
++...++.+++...+.
T Consensus 111 ~eile~~e~ie~~~~~ 126 (256)
T 3na7_A 111 REIENLQNEIKRKSEK 126 (256)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 13
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=38.82 E-value=2.1e+02 Score=26.06 Aligned_cols=94 Identities=7% Similarity=0.153 Sum_probs=55.4
Q ss_pred CchhHHHHHHHHhcc----CCCC--hHHHHHHHHhhhhccCCCHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 043666 3 LAPGLSRKLKKVLES----RTET--PDLLASLKTLSTFYEENTPHARRNLRSTIEKRALSINLDFLQASSAAQQALDQVE 76 (680)
Q Consensus 3 ~a~~l~~k~~kvL~~----~~~~--~~~~~aL~~Ls~~~~~nt~~aRr~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~ 76 (680)
+|.-+-.|+..+-+. +++. -.+..||...++.+.. + +.+..+...++...
T Consensus 33 vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~-----~-------------------~~~~~L~~~l~~~~ 88 (138)
T 3hnw_A 33 VASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKA-----K-------------------KMADSLSLDIENKD 88 (138)
T ss_dssp HHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHH-----H-------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHH-----H-------------------HHHHHHHHHHHHHH
Confidence 455677788877633 2222 4677777777766321 1 12333344455555
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHH
Q 043666 77 EEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQR 120 (680)
Q Consensus 77 ~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K 120 (680)
..+..+..-....+.++.........+-++...|+.+...++.+
T Consensus 89 kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 89 KEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666666666666666677777777777766654
No 14
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=38.04 E-value=1e+02 Score=29.68 Aligned_cols=111 Identities=18% Similarity=0.256 Sum_probs=51.5
Q ss_pred HHHHHHHhccCCCCh-HHHHHHHHhhhhcc--CCCHHHHHhhHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 8 SRKLKKVLESRTETP-DLLASLKTLSTFYE--ENTPHARRNLRSTIEK--RALSINLDFLQASSAAQQALDQVEEEVNSL 82 (680)
Q Consensus 8 ~~k~~kvL~~~~~~~-~~~~aL~~Ls~~~~--~nt~~aRr~LR~~iE~--~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l 82 (680)
|.|++++|... +| |+++|=+.+=.++. +...+-..+++++||. .-.++=.++|.+|.+=...-..=...+.+|
T Consensus 35 Sa~L~eLirs~--~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL 112 (186)
T 1oxz_A 35 SKMLARLLKSS--HPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKEL 112 (186)
T ss_dssp HHHHHHHHSCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHH
T ss_pred HHHHHHHhcCC--ChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHH
Confidence 56677777443 33 35555333322222 2223445555555554 222222333333322100000002455567
Q ss_pred HHHHHHHHHHHhhhhhhh---cchHHHHHHHHHHHHHHHHH
Q 043666 83 AECCDRIEKALNSCNATT---GNIIETTERLKRDLDVNTQR 120 (680)
Q Consensus 83 ~~~c~~m~~~L~~~~~~t---~~ll~e~~~L~~~~~~l~~K 120 (680)
.+.|..|+.++..--.++ .+++.++=.+..+...+=.|
T Consensus 113 ~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~ND~Ln~vl~k 153 (186)
T 1oxz_A 113 YQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINL 153 (186)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHHHH
Confidence 777777777775533332 24666666666665544444
No 15
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=33.60 E-value=3.1e+02 Score=25.86 Aligned_cols=72 Identities=8% Similarity=0.159 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHH
Q 043666 47 RSTIEKRALSINLDFLQAS---SAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNT 118 (680)
Q Consensus 47 R~~iE~~~l~~n~~~L~~f---~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~ 118 (680)
|..+|+++.......-.+= ..-.+.+..++..+..|..-.+.++.++.....+.+.+.+.+..|.+++..++
T Consensus 64 k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 64 KSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5566777766666655543 44445566777778888888888888888888888888888888888777776
No 16
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=33.50 E-value=1.5e+02 Score=22.33 Aligned_cols=51 Identities=24% Similarity=0.361 Sum_probs=40.0
Q ss_pred HHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043666 42 ARRNLRSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALN 94 (680)
Q Consensus 42 aRr~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~ 94 (680)
+||.+|--.|.+-+... .+.++..--++|++++..++.++.-...-+..|.
T Consensus 2 t~~~~~l~~ese~~g~~--Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 2 TRRILGLAIESQDAGIK--TITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 57888888887766554 7788888889999999998888888777666554
No 17
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.10 E-value=1.5e+02 Score=26.49 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=12.9
Q ss_pred CChhHHHHHHHHHHHHHHHH
Q 043666 146 LDESFFKALAHVQEIHANCK 165 (680)
Q Consensus 146 Vd~~FF~aL~rv~~I~~~c~ 165 (680)
+-.+|-.+|...+.+...+.
T Consensus 96 L~~dF~~~L~~FQ~~Qr~~a 115 (130)
T 2dnx_A 96 LMNDFSAALNNFQAVQRRVS 115 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777766653
No 18
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=31.00 E-value=1.7e+02 Score=22.14 Aligned_cols=46 Identities=9% Similarity=0.137 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHH
Q 043666 68 AQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRD 113 (680)
Q Consensus 68 v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~ 113 (680)
+.+.+......+.......+..+..+.........+.+++..++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444445444443
No 19
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=30.38 E-value=2.3e+02 Score=26.83 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHh
Q 043666 70 QALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEIVSCFLRDYQLSNEEINA 140 (680)
Q Consensus 70 ~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl~~F~Ls~~E~~~ 140 (680)
...+.+.+.|+.|+.++..+.+.|..-......+=.++++|+-+.-.+...+.-...-+.++-+++..+..
T Consensus 96 ~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~~~Gv~q~~in~ 166 (170)
T 3l4q_C 96 LNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQKGARQKKINE 166 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 44557788899999999999999999888888999999999999988888888888888888888776653
No 20
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=29.78 E-value=3.4e+02 Score=30.13 Aligned_cols=70 Identities=13% Similarity=0.234 Sum_probs=38.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhhcch------HHHHHHHHHHHHHHHH
Q 043666 49 TIEKRALSINLDFLQASSAAQQALD-QVEEEVNSLAECCDRIEKALNSCNATTGNI------IETTERLKRDLDVNTQ 119 (680)
Q Consensus 49 ~iE~~~l~~n~~~L~~f~~v~~~l~-~l~~~v~~l~~~c~~m~~~L~~~~~~t~~l------l~e~~~L~~~~~~l~~ 119 (680)
+||++...+..++-..+..+ +.|+ .|.+++.+|...=.+|..++..++...... ++..+.+|+|++++..
T Consensus 114 ELRRrIqyLKekVdnQlsnI-rvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a 190 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHI-QLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIA 190 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhh
Confidence 67777777776666666333 2222 234445555555556666666666554433 4555556665554443
No 21
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=29.52 E-value=4.2e+02 Score=26.12 Aligned_cols=55 Identities=9% Similarity=0.070 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhcchHHHHHHHHHHHHHHH
Q 043666 64 ASSAAQQALDQVEEEVNSLAECCDRIEKALNSC--NATTGNIIETTERLKRDLDVNT 118 (680)
Q Consensus 64 ~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~--~~~t~~ll~e~~~L~~~~~~l~ 118 (680)
+...+...+.++..+++.+.......+.++... ..+...+..++..+..+...++
T Consensus 54 ~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE 110 (256)
T 3na7_A 54 EKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQAN 110 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666666542 2233344455555544444333
No 22
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=28.70 E-value=3.3e+02 Score=28.01 Aligned_cols=77 Identities=6% Similarity=0.102 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Q 043666 63 QASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEIVSCFLRDYQLSNEEIN 139 (680)
Q Consensus 63 ~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl~~F~Ls~~E~~ 139 (680)
.....+...+..+......+...+++|...+..-...+......+.........+...-.-|.....+|.+......
T Consensus 234 ~~~~~i~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~a~~L~~~v~~Fki~~~~~~ 310 (341)
T 3zx6_A 234 SAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVFRIQQQQQQ 310 (341)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccch
Confidence 33334444444444444444445555555554444444444445555555555666666777888889999876643
No 23
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=28.54 E-value=1.2e+02 Score=32.65 Aligned_cols=65 Identities=9% Similarity=0.122 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 62 LQASSAAQQALDQVEEEVNSLAECCDRIEKALNS-CNATTGNIIETTERLKRDLDVNTQRQEIVSC 126 (680)
Q Consensus 62 L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~-~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~ 126 (680)
++++-.+.++-..+...++.++.--..+.+.+.. .......+..++..|+++.+.++.+..-+..
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEA 92 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777888888888888888888888764 3345567888888888888877776554443
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=27.64 E-value=1.8e+02 Score=32.15 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=8.4
Q ss_pred HHHhhHHHHHHHHHHhh
Q 043666 42 ARRNLRSTIEKRALSIN 58 (680)
Q Consensus 42 aRr~LR~~iE~~~l~~n 58 (680)
+-..++.+++.+.-...
T Consensus 478 ~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 478 LLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhhcC
Confidence 34445555555544444
No 25
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=27.32 E-value=2.4e+02 Score=27.89 Aligned_cols=109 Identities=8% Similarity=0.066 Sum_probs=60.7
Q ss_pred hHHHHHHHHhccCCCChHHHHHHHHhhhhccCCCHHHHHhhHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 6 GLSRKLKKVLESRTETPDLLASLKTLSTFYEENTPHARRNLRSTIEKRALSI----NLDFLQASSAAQQALDQVEEEVNS 81 (680)
Q Consensus 6 ~l~~k~~kvL~~~~~~~~~~~aL~~Ls~~~~~nt~~aRr~LR~~iE~~~l~~----n~~~L~~f~~v~~~l~~l~~~v~~ 81 (680)
.|...|++.+.+....+...+.++.|..-|..-....|..+-.++|...-+. .....+-|-.|.+++.. .--+-
T Consensus 122 ~L~~fi~~~~~~~~~~~g~i~~~d~l~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~Y~kvm~ki~~--~g~~~ 199 (248)
T 2c0g_A 122 NLKAFVSANTPLYIGRDGCIKEFNEVLKNYANIPDAEQLKLIEKLQAKQEQLTDPEQQQNARAYLIYMRKIHE--VGYDF 199 (248)
T ss_dssp HHHHHHHHHSSCCCCCTTCCHHHHHHHTTGGGSCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH--HCTHH
T ss_pred HHHHHHHHhhccccCCCCchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHh--hhhHH
Confidence 4677777777655555777888888855444444456688878887765554 23444555555554422 00111
Q ss_pred HHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 82 LAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEIVSCFL 128 (680)
Q Consensus 82 l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl 128 (680)
+..-.++++..|.. .+. -+++..+..|..+|..|.
T Consensus 200 ~~~E~~Rl~~~l~~------~~~------~~k~d~~~~r~NIL~~F~ 234 (248)
T 2c0g_A 200 LEEETKRLLRLKAG------KVT------EAKKEELLRKLNILEVFR 234 (248)
T ss_dssp HHHHHHHHHHHHTS------SCC------HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhc------CCC------HHHHHHHHHHHHHHHHHH
Confidence 22233333333311 000 134677788888988884
No 26
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=27.12 E-value=3.1e+02 Score=23.80 Aligned_cols=71 Identities=11% Similarity=0.164 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHH
Q 043666 47 RSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVN 117 (680)
Q Consensus 47 R~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l 117 (680)
+..++.++..++.........-..+++.+...|..=..-+..++..+.........+......+..++..+
T Consensus 31 k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 31 KKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555554444444455555555555555666666666655543
No 27
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=26.53 E-value=1.9e+02 Score=26.09 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=28.6
Q ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Q 043666 98 ATTGNIIETTERLKRDLDVNTQRQEIVSCFLRDYQLSNEEIN 139 (680)
Q Consensus 98 ~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl~~F~Ls~~E~~ 139 (680)
..+.+|......+..+++.++.==.++.+--.+|.|++.|+.
T Consensus 67 ~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~ 108 (130)
T 4dnd_A 67 WTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQ 108 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHH
Confidence 344555666666666666666666667777788888888764
No 28
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=26.45 E-value=2.8e+02 Score=22.98 Aligned_cols=58 Identities=12% Similarity=0.284 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh------hhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 70 QALDQVEEEVNSLAECCDRIEKALNSC------NATTGNIIETTERLKRDLDVNTQRQEIVSCF 127 (680)
Q Consensus 70 ~~l~~l~~~v~~l~~~c~~m~~~L~~~------~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~F 127 (680)
+.|+.+...|..|..-...++..|... ...+..+..+...+..++..+..|..-|...
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~ 85 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457778888888888888888888652 2345677777778888877777776655443
No 29
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=26.19 E-value=1.3e+02 Score=27.49 Aligned_cols=110 Identities=17% Similarity=0.244 Sum_probs=48.6
Q ss_pred HHHHHHHhcc-CCCChHHHHH---HHHhhhhccCCCHHHHHhhHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 8 SRKLKKVLES-RTETPDLLAS---LKTLSTFYEENTPHARRNLRSTIEK--RALSINLDFLQASSAAQQALDQVEEEVNS 81 (680)
Q Consensus 8 ~~k~~kvL~~-~~~~~~~~~a---L~~Ls~~~~~nt~~aRr~LR~~iE~--~~l~~n~~~L~~f~~v~~~l~~l~~~v~~ 81 (680)
|.|++++|.. +.+| +++| ++....+ .+..++-..+++++|+. .-.++=.++|.+|.|=...=..=...+.+
T Consensus 10 s~~L~~Lirs~~P~D--L~~AN~LiK~m~~~-d~~r~e~~~k~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~e 86 (140)
T 1o3x_A 10 SKMLARLLKSSHPED--LRAANKLIKEMVQE-DQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKE 86 (140)
T ss_dssp -------------------CCCSSTHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHhcCChhh--HHHHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHH
Confidence 4567777733 3333 3333 3333332 22334556666666654 12333333444443310000001246677
Q ss_pred HHHHHHHHHHHHhhhhhhh---cchHHHHHHHHHHHHHHHHH
Q 043666 82 LAECCDRIEKALNSCNATT---GNIIETTERLKRDLDVNTQR 120 (680)
Q Consensus 82 l~~~c~~m~~~L~~~~~~t---~~ll~e~~~L~~~~~~l~~K 120 (680)
|.+.|..|+.++..--.++ .+++.++=.+..+...+=.|
T Consensus 87 L~~~ck~~qp~i~~li~e~~ddee~l~elL~~ND~ln~vl~k 128 (140)
T 1o3x_A 87 LYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINL 128 (140)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHHHH
Confidence 8889999998886644333 34777777777777665555
No 30
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=25.49 E-value=8.2e+02 Score=28.16 Aligned_cols=119 Identities=18% Similarity=0.082 Sum_probs=57.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchHHHHHHHHHH
Q 043666 145 DLDESFFKALAHVQEIHANCKVLLRTHHQRAGLELMDMMAMYQEGAYERLCRWVQAECRKLGDTENPEVGELLKTAVRCL 224 (680)
Q Consensus 145 ~Vd~~FF~aL~rv~~I~~~c~~LL~~~~q~aGleiMe~~s~~~e~A~erL~~w~q~e~~~l~~~~~~e~~~~l~~al~~L 224 (680)
++.+=.=.|-.++++=.+.|..-|.. .-...|++.+...+-..+- .++..+|..+...+..+ -|++-++.+
T Consensus 240 ~~~~Yl~~~e~~l~eE~~R~~~yL~~---~t~~~l~~~~~~~Li~~~~---~~l~~~~~~ll~~~~~~---dL~~my~L~ 310 (760)
T 1ldj_A 240 PVTEYMKKAEARLLEEQRRVQVYLHE---STQDELARKCEQVLIEKHL---EIFHTEFQNLLDADKNE---DLGRMYNLV 310 (760)
T ss_dssp CTTSSHHHHHHHHHHHHHTTTTTTCS---SSSHHHHHHHHHHHSSSSS---HHHHHHHHHHHHSCCTT---HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCH---hhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCCHH---HHHHHHHHh
Confidence 33333333444444444555444321 1123455554444322221 22334565554333333 345555555
Q ss_pred hcCc---hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccccCcchhhhhHHHHHHHH
Q 043666 225 KERP---VLFKYCAEEVANMRHNALFRRFLSALTRGGPGGLPRPIEVHAHDPLRYVGDMLGWLHQA 287 (680)
Q Consensus 225 ~~rp---~lf~~~ld~~a~~R~~~L~~~F~~aLt~g~~~g~~rPIel~AhDP~RYvgDmLAwvHqa 287 (680)
+.-| ..+..++..+....-..++..+. .| ...||..||.++|.--+..
T Consensus 311 ~rv~~gl~~l~~~~~~~i~~~G~~~v~~~~----~~-----------~~~~~~~~V~~ll~l~~k~ 361 (760)
T 1ldj_A 311 SRIQDGLGELKKLLETHIHNQGLAAIEKCG----EA-----------ALNDPKMYVQTVLDVHKKY 361 (760)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHHHHHHT----TS-----------GGGCHHHHHHHHHHHHHHH
T ss_pred CcCcchHHHHHHHHHHHHHHHHHHHHHHhh----cc-----------cccCHHHHHHHHHHHHHHH
Confidence 5433 44566666666655555554432 11 1368999999999765543
No 31
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=25.30 E-value=1.7e+02 Score=32.42 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------hhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 62 LQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCN-----------ATTGNIIETTERLKRDLDVNTQRQEIVSCFL 128 (680)
Q Consensus 62 L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~-----------~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl 128 (680)
++++-.+.++...+...++.|..--..+.+.+...+ .+...+..++..|+++.+.++.+..-+..=+
T Consensus 69 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 69 LPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555556555555555554321 2445788888888888888877755554433
No 32
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=25.27 E-value=2.9e+02 Score=22.90 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043666 68 AQQALDQVEEEVNSLAECCDRIEKALNSC 96 (680)
Q Consensus 68 v~~~l~~l~~~v~~l~~~c~~m~~~L~~~ 96 (680)
+..+|+.++.+|+.|....+.....+...
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44555555555555555555555554443
No 33
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=24.89 E-value=1.9e+02 Score=22.08 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHH
Q 043666 70 QALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETT 107 (680)
Q Consensus 70 ~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~ 107 (680)
.+++.+.++|+.|+.-++.++..+...+.+....-+|+
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA 41 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDA 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666777777777776666555444333333333
No 34
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=24.40 E-value=6.6e+02 Score=26.68 Aligned_cols=96 Identities=11% Similarity=0.130 Sum_probs=52.7
Q ss_pred HHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHH
Q 043666 43 RRNLRSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQE 122 (680)
Q Consensus 43 Rr~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ 122 (680)
=-.+-.+||++..-+...+-..+. +|+.|+..|..+..-.++++..+.-+......-....-.++-+++.-+..++
T Consensus 111 ~~e~s~eLe~~i~~lk~~V~~q~~----~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqK 186 (390)
T 1deq_A 111 FKQINEDLRSRIEILRRKVIEQVQ----RINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQK 186 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHH
Confidence 345566788887777777776665 5566666666666666666666655544444434444444423333333333
Q ss_pred HHHHHHhcccCCHHHHHhcc
Q 043666 123 IVSCFLRDYQLSNEEINALR 142 (680)
Q Consensus 123 ll~~Fl~~F~Ls~~E~~~L~ 142 (680)
.|....++=-|+..++..|.
T Consensus 187 QL~qv~a~~llP~~~~q~lp 206 (390)
T 1deq_A 187 QLEQVIAINLLPSRDIQYLP 206 (390)
T ss_pred HHHhhhhhcccccccccccc
Confidence 34444444445655555553
No 35
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=23.90 E-value=3e+02 Score=22.49 Aligned_cols=57 Identities=28% Similarity=0.330 Sum_probs=46.1
Q ss_pred CCCHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043666 37 ENTPHARRNLRSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNS 95 (680)
Q Consensus 37 ~nt~~aRr~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~ 95 (680)
..+...|+.+|--.|.+-+..+ .+..+..--++|.+++..++.++.-...-+..|..
T Consensus 20 ~s~~s~~~~l~~a~Ete~~G~~--Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~ 76 (79)
T 1n7s_C 20 ESLESTRRMLQLVEESKDAGIR--TLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKD 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhh
Confidence 3566789999999998877765 78888888999999999988888887777766643
No 36
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=23.33 E-value=2.9e+02 Score=26.93 Aligned_cols=71 Identities=7% Similarity=0.101 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 043666 64 ASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVNTQRQEIVSCFLRDYQLS 134 (680)
Q Consensus 64 ~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl~~F~Ls 134 (680)
....+...+..+......+...+++|...+..-...+......+..+......+...-.-|.....+|.+.
T Consensus 155 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~L~~~a~~L~~~v~~Fk~~ 225 (227)
T 1qu7_A 155 AVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEQSAAAAAALEEQASRLTEAVAVFRIQ 225 (227)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33334444444444444455555555555544444444444444444454555555555566667777663
No 37
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=22.35 E-value=2.8e+02 Score=30.09 Aligned_cols=69 Identities=7% Similarity=0.117 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043666 61 FLQASSAAQQALDQVEEEVNSLAECCDRIEKALNS---CNATTGNIIETTERLKRDLDVNTQRQEIVSCFLR 129 (680)
Q Consensus 61 ~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~---~~~~t~~ll~e~~~L~~~~~~l~~K~~ll~~Fl~ 129 (680)
.++++-.+.++-..+...++.|..--..+.+++.. ...+...+..++..|+++.+.++.+..-+..=+.
T Consensus 29 ~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (455)
T 2dq0_A 29 WVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKID 100 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666777777777776666666654 3345668889999999998888877655544333
No 38
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.85 E-value=3.4e+02 Score=22.38 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Q 043666 45 NLRSTIEKRALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLD 115 (680)
Q Consensus 45 ~LR~~iE~~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~ 115 (680)
+|.+.+|-.+-.--.+.+...+.=.+.|.+.+..+..=....++|=++|. .+...+-..+..|+.+.+
T Consensus 3 SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~---~E~~~l~~ni~~lk~K~~ 70 (78)
T 3iv1_A 3 SLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLD---QEVAEVDKNIELLKKKDE 70 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 46677777666666666666666666666666665555555555554444 233334444444444433
No 39
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=21.44 E-value=7.9e+02 Score=27.90 Aligned_cols=88 Identities=22% Similarity=0.192 Sum_probs=54.7
Q ss_pred HHHHhhHHHHHHHHHHhhHHHHHHHH-----HHHHHHHHHHHHH-HHHHHHHHHHHHHHhh----hhhhhcchHHHHHHH
Q 043666 41 HARRNLRSTIEKRALSINLDFLQASS-----AAQQALDQVEEEV-NSLAECCDRIEKALNS----CNATTGNIIETTERL 110 (680)
Q Consensus 41 ~aRr~LR~~iE~~~l~~n~~~L~~f~-----~v~~~l~~l~~~v-~~l~~~c~~m~~~L~~----~~~~t~~ll~e~~~L 110 (680)
.+|+.+.+.+++++-+.-+++-.++. .|.+++..++.++ .+|+..++.++..|.. .+.....+-.+.+.|
T Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~l 667 (695)
T 2j69_A 588 QARRELVKTAKKELVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRINDDIVSRKSELDNLVKQKQTREINRESEFNRL 667 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 48888888888888877777775554 5556666666443 4677777777777744 333444555566666
Q ss_pred HH----HHHHHHHHHHHHHHHH
Q 043666 111 KR----DLDVNTQRQEIVSCFL 128 (680)
Q Consensus 111 ~~----~~~~l~~K~~ll~~Fl 128 (680)
+. ..+.++.=+..+..++
T Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~ 689 (695)
T 2j69_A 668 KNLQEDVIAQLQKIEAAYSNLL 689 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
Confidence 65 4444444444444443
No 40
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=21.27 E-value=6.9e+02 Score=25.75 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHH----HHHHHHHHHHHHHhc--ccCCHHHHHhccCCC
Q 043666 72 LDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLD----VNTQRQEIVSCFLRD--YQLSNEEINALRDED 145 (680)
Q Consensus 72 l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~----~l~~K~~ll~~Fl~~--F~Ls~~E~~~L~~~~ 145 (680)
++.....++.+....+++++++.... ....+.++..|+++.- .+.-.+.++..+... ..++++....+ ++
T Consensus 190 vd~y~~~l~~l~~~id~lE~~v~~~~--~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~~~l--rD 265 (363)
T 2iub_A 190 VDDYFVLLEKIDDEIDVLEEEVLERP--EKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPLIEKETVPYF--RD 265 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHH--HH
Confidence 34444455666777777777775432 2355677777766643 333446667766643 22332222222 12
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043666 146 LDESFFKALAHVQEIHANCKVLLRTHHQRAGLELMDMMAMYQEGAYERLCRWVQA 200 (680)
Q Consensus 146 Vd~~FF~aL~rv~~I~~~c~~LL~~~~q~aGleiMe~~s~~~e~A~erL~~w~q~ 200 (680)
|-+..=.+++.++..++.+..++. ..+..++..++....+|--|..=
T Consensus 266 v~d~~~~~~e~~~~~re~l~~l~d--------~~~s~is~~~N~imk~LTiit~I 312 (363)
T 2iub_A 266 VYDHTIQIADTVETFRDIVSGLLD--------VYLSSVSNKTNEVMKVLTIIATI 312 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444443332 34556677777777777777653
No 41
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=20.82 E-value=3.9e+02 Score=22.72 Aligned_cols=56 Identities=13% Similarity=0.138 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHH
Q 043666 62 LQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVN 117 (680)
Q Consensus 62 L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l 117 (680)
=.+...+.+++..++.+++.....+...+..|..+......-=.++..|+...+.+
T Consensus 43 E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666666666666666554333333333555555544433
No 42
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=20.43 E-value=7.8e+02 Score=26.03 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=35.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 043666 53 RALSINLDFLQASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNAT 99 (680)
Q Consensus 53 ~~l~~n~~~L~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~ 99 (680)
+.-..+..+-+.+.++.+.|..++++...+|..+-.+++.|.+..++
T Consensus 394 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (471)
T 3mq9_A 394 EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ 440 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHH
Confidence 34466666777888888888888888888888888888888664433
No 43
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=20.27 E-value=4e+02 Score=22.57 Aligned_cols=55 Identities=16% Similarity=0.286 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHH
Q 043666 63 QASSAAQQALDQVEEEVNSLAECCDRIEKALNSCNATTGNIIETTERLKRDLDVN 117 (680)
Q Consensus 63 ~~f~~v~~~l~~l~~~v~~l~~~c~~m~~~L~~~~~~t~~ll~e~~~L~~~~~~l 117 (680)
.+...+.+++..++.+++.....+...+..|.........-=.++.+|+...+.+
T Consensus 44 ~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 44 EEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666665554333333334555555544433
Done!