BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043667
         (387 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 34.7 bits (78), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 265 RLEYLRLRYCKGLVKLPQXXXXXXXXREIDIYDCSSLVSFP-EVALPSKLKKIEIRKCDA 323
           +LE L LR C  L   P         + + + DCS+L++ P ++   ++L+K+++R C  
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289

Query: 324 LKSLP 328
           L  LP
Sbjct: 290 LSRLP 294


>pdb|1VHB|A Chain A, Bacterial Dimeric Hemoglobin From Vitreoscilla Stercoraria
 pdb|1VHB|B Chain B, Bacterial Dimeric Hemoglobin From Vitreoscilla Stercoraria
 pdb|2VHB|A Chain A, Azide Adduct Of The Bacterial Hemoglobin From Vitreoscilla
           Stercoraria
 pdb|2VHB|B Chain B, Azide Adduct Of The Bacterial Hemoglobin From Vitreoscilla
           Stercoraria
 pdb|3VHB|A Chain A, Imidazole Adduct Of The Bacterial Hemoglobin From
           Vitreoscilla Sp.
 pdb|3VHB|B Chain B, Imidazole Adduct Of The Bacterial Hemoglobin From
           Vitreoscilla Sp.
 pdb|4VHB|A Chain A, Thiocyanate Adduct Of The Bacterial Hemoglobin From
           Vitreoscilla Sp.
 pdb|4VHB|B Chain B, Thiocyanate Adduct Of The Bacterial Hemoglobin From
           Vitreoscilla Sp
          Length = 146

 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 113 PKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWR 172
           PK   + +L  ++     P  LPA++ + ++ C+   V+ +  P + +  +G  K+V+  
Sbjct: 54  PKALAMTVLAAAQNIENLPAILPAVKKIAVKHCQA-GVAAAHYPIVGQELLGAIKEVLGD 112

Query: 173 SATDHL 178
           +ATD +
Sbjct: 113 AATDDI 118


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,732,334
Number of Sequences: 62578
Number of extensions: 407473
Number of successful extensions: 772
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 769
Number of HSP's gapped (non-prelim): 6
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)