Query 043667
Match_columns 387
No_of_seqs 157 out of 1699
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 07:12:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 1.1E-24 2.3E-29 228.6 22.9 338 2-378 554-911 (1153)
2 PLN03210 Resistant to P. syrin 99.9 5.2E-23 1.1E-27 215.9 23.7 324 30-385 557-895 (1153)
3 PLN00113 leucine-rich repeat r 99.9 1.7E-23 3.6E-28 218.7 19.6 352 2-380 160-567 (968)
4 PLN00113 leucine-rich repeat r 99.9 4.3E-23 9.3E-28 215.7 19.9 353 4-385 116-525 (968)
5 KOG4194 Membrane glycoprotein 99.8 7.6E-19 1.7E-23 161.3 5.6 79 6-93 78-158 (873)
6 KOG4194 Membrane glycoprotein 99.7 6.3E-19 1.4E-23 161.8 4.3 142 32-188 79-230 (873)
7 KOG0444 Cytoskeletal regulator 99.7 4E-19 8.6E-24 164.5 -4.5 335 5-377 6-379 (1255)
8 KOG0444 Cytoskeletal regulator 99.6 3.5E-17 7.5E-22 151.8 -3.7 310 5-351 54-376 (1255)
9 KOG0618 Serine/threonine phosp 99.5 2.3E-16 5.1E-21 152.2 -4.4 346 4-372 66-488 (1081)
10 KOG0472 Leucine-rich repeat pr 99.5 8E-17 1.7E-21 142.0 -7.2 112 262-381 433-547 (565)
11 PRK15387 E3 ubiquitin-protein 99.5 2.9E-13 6.3E-18 133.9 15.6 257 7-351 202-458 (788)
12 KOG0618 Serine/threonine phosp 99.5 1.3E-15 2.9E-20 147.1 -5.4 332 5-380 44-426 (1081)
13 PRK15387 E3 ubiquitin-protein 99.4 5E-12 1.1E-16 125.2 14.6 234 6-322 222-456 (788)
14 KOG4341 F-box protein containi 99.4 6.4E-15 1.4E-19 130.8 -6.6 108 55-170 139-256 (483)
15 KOG4341 F-box protein containi 99.3 1.8E-14 4E-19 127.9 -5.5 281 84-380 138-446 (483)
16 KOG0472 Leucine-rich repeat pr 99.3 9.5E-15 2.1E-19 129.0 -7.5 315 7-356 184-545 (565)
17 PRK15370 E3 ubiquitin-protein 99.2 1.5E-10 3.2E-15 115.4 11.2 114 55-189 179-293 (754)
18 KOG4658 Apoptotic ATPase [Sign 99.1 4E-11 8.6E-16 121.3 5.5 240 6-292 545-798 (889)
19 PRK15370 E3 ubiquitin-protein 99.1 6.1E-10 1.3E-14 111.1 12.4 115 6-145 178-293 (754)
20 KOG4658 Apoptotic ATPase [Sign 99.0 3.5E-10 7.7E-15 114.5 4.3 74 227-304 713-786 (889)
21 KOG4237 Extracellular matrix p 98.9 6.2E-11 1.3E-15 105.0 -3.4 271 18-321 58-356 (498)
22 KOG0617 Ras suppressor protein 98.9 8.4E-11 1.8E-15 92.7 -3.8 152 211-381 38-193 (264)
23 KOG0617 Ras suppressor protein 98.7 2.9E-10 6.4E-15 89.6 -4.6 146 30-189 32-183 (264)
24 cd00116 LRR_RI Leucine-rich re 98.7 3.1E-09 6.7E-14 97.2 0.4 132 227-369 161-316 (319)
25 cd00116 LRR_RI Leucine-rich re 98.6 1.9E-08 4E-13 92.1 3.4 159 204-376 108-293 (319)
26 PRK15386 type III secretion pr 98.6 4.3E-07 9.3E-12 83.4 10.4 63 153-223 49-111 (426)
27 KOG4237 Extracellular matrix p 98.5 3.4E-09 7.4E-14 94.2 -4.4 122 55-188 68-197 (498)
28 PRK15386 type III secretion pr 98.5 3E-07 6.4E-12 84.4 7.8 136 203-371 51-188 (426)
29 PF14580 LRR_9: Leucine-rich r 98.5 1E-07 2.3E-12 77.9 4.3 110 3-125 16-125 (175)
30 KOG2120 SCF ubiquitin ligase, 98.5 2.6E-09 5.6E-14 91.6 -5.9 180 136-323 186-375 (419)
31 KOG2120 SCF ubiquitin ligase, 98.2 1.3E-07 2.8E-12 81.4 -2.2 133 229-370 232-373 (419)
32 KOG3207 Beta-tubulin folding c 98.2 2.2E-07 4.7E-12 84.0 -1.4 173 5-190 120-312 (505)
33 KOG1259 Nischarin, modulator o 98.1 8.5E-07 1.9E-11 76.5 1.5 36 152-188 303-338 (490)
34 KOG1259 Nischarin, modulator o 98.1 2.2E-06 4.9E-11 74.0 2.6 126 231-377 284-415 (490)
35 KOG3207 Beta-tubulin folding c 98.0 1.2E-06 2.5E-11 79.4 0.6 89 228-328 219-317 (505)
36 PF13855 LRR_8: Leucine rich r 98.0 6.6E-06 1.4E-10 55.0 3.6 56 6-64 1-59 (61)
37 PF14580 LRR_9: Leucine-rich r 98.0 8.3E-06 1.8E-10 66.8 4.8 124 229-369 17-149 (175)
38 KOG1947 Leucine rich repeat pr 98.0 7.9E-07 1.7E-11 86.1 -2.4 233 134-377 187-444 (482)
39 PF13855 LRR_8: Leucine rich r 97.9 1.9E-05 4.1E-10 52.7 5.0 54 265-320 2-58 (61)
40 KOG1947 Leucine rich repeat pr 97.9 8.8E-07 1.9E-11 85.8 -3.0 210 154-374 186-415 (482)
41 KOG1909 Ran GTPase-activating 97.7 2.6E-06 5.6E-11 75.1 -3.7 198 150-371 86-309 (382)
42 KOG0532 Leucine-rich repeat (L 97.6 2.5E-06 5.4E-11 79.8 -4.8 143 219-381 110-254 (722)
43 PF12799 LRR_4: Leucine Rich r 97.6 7.1E-05 1.5E-09 46.0 2.9 32 32-64 2-34 (44)
44 COG4886 Leucine-rich repeat (L 97.5 0.00013 2.8E-09 68.9 5.0 101 264-369 186-286 (394)
45 PF12799 LRR_4: Leucine Rich r 97.5 0.00013 2.8E-09 44.9 3.1 42 6-50 1-42 (44)
46 COG4886 Leucine-rich repeat (L 97.4 0.00012 2.7E-09 69.0 4.2 55 7-64 117-173 (394)
47 KOG1909 Ran GTPase-activating 97.4 2.2E-05 4.7E-10 69.4 -1.8 15 50-64 116-130 (382)
48 KOG3665 ZYG-1-like serine/thre 97.3 5.9E-05 1.3E-09 75.2 0.7 107 6-125 122-232 (699)
49 KOG3665 ZYG-1-like serine/thre 97.3 0.00016 3.4E-09 72.3 2.9 105 204-321 122-230 (699)
50 KOG0532 Leucine-rich repeat (L 97.0 6.8E-05 1.5E-09 70.5 -2.2 187 161-370 80-270 (722)
51 KOG1859 Leucine-rich repeat pr 97.0 9E-06 1.9E-10 78.4 -8.2 76 264-346 187-263 (1096)
52 PLN03150 hypothetical protein; 97.0 0.0022 4.7E-08 64.1 7.3 108 266-376 420-531 (623)
53 PLN03150 hypothetical protein; 96.7 0.004 8.7E-08 62.2 7.3 105 233-348 420-526 (623)
54 KOG1644 U2-associated snRNP A' 96.6 0.0068 1.5E-07 50.0 6.6 81 30-123 41-123 (233)
55 KOG0531 Protein phosphatase 1, 96.6 0.00057 1.2E-08 64.9 -0.0 81 2-93 91-171 (414)
56 KOG2982 Uncharacterized conser 96.1 0.0015 3.3E-08 56.9 0.2 55 134-188 70-130 (418)
57 KOG2982 Uncharacterized conser 96.0 0.0018 3.9E-08 56.5 0.2 226 51-295 42-286 (418)
58 KOG1859 Leucine-rich repeat pr 96.0 0.00086 1.9E-08 65.2 -2.1 99 265-369 165-263 (1096)
59 KOG1644 U2-associated snRNP A' 95.8 0.014 3.1E-07 48.1 4.5 104 9-123 45-150 (233)
60 PF13504 LRR_7: Leucine rich r 95.7 0.0072 1.6E-07 28.6 1.5 17 360-377 1-17 (17)
61 PF13306 LRR_5: Leucine rich r 95.3 0.13 2.7E-06 39.8 8.2 102 226-345 7-111 (129)
62 PF00560 LRR_1: Leucine Rich R 95.2 0.013 2.8E-07 29.8 1.5 18 361-379 1-18 (22)
63 KOG3864 Uncharacterized conser 94.8 0.0076 1.7E-07 49.7 -0.1 65 311-375 125-191 (221)
64 KOG3864 Uncharacterized conser 94.7 0.0066 1.4E-07 50.0 -0.7 65 228-299 122-187 (221)
65 PF13306 LRR_5: Leucine rich r 94.5 0.29 6.3E-06 37.7 8.3 108 201-328 9-118 (129)
66 KOG0531 Protein phosphatase 1, 93.5 0.031 6.7E-07 53.1 1.1 111 227-354 91-202 (414)
67 KOG2739 Leucine-rich acidic nu 92.3 0.064 1.4E-06 46.1 1.3 10 264-273 91-100 (260)
68 KOG2123 Uncharacterized conser 92.0 0.011 2.4E-07 51.2 -3.6 103 157-270 20-123 (388)
69 KOG2123 Uncharacterized conser 91.8 0.0038 8.2E-08 54.0 -6.6 79 6-93 19-97 (388)
70 KOG2739 Leucine-rich acidic nu 91.6 0.12 2.6E-06 44.5 2.1 104 263-372 42-155 (260)
71 KOG4579 Leucine-rich repeat (L 90.8 0.0075 1.6E-07 46.6 -5.2 85 264-355 53-140 (177)
72 COG5238 RNA1 Ran GTPase-activa 88.8 0.7 1.5E-05 40.3 4.4 140 200-347 88-252 (388)
73 smart00367 LRR_CC Leucine-rich 88.4 0.29 6.3E-06 25.9 1.3 15 339-353 4-18 (26)
74 COG5238 RNA1 Ran GTPase-activa 87.8 0.17 3.7E-06 44.0 0.2 40 150-189 86-130 (388)
75 KOG4579 Leucine-rich repeat (L 86.9 0.052 1.1E-06 42.1 -3.1 56 7-64 54-110 (177)
76 smart00364 LRR_BAC Leucine-ric 81.9 0.86 1.9E-05 24.1 1.1 18 360-378 2-19 (26)
77 smart00369 LRR_TYP Leucine-ric 79.5 1.3 2.7E-05 23.3 1.3 19 360-379 2-20 (26)
78 smart00370 LRR Leucine-rich re 79.5 1.3 2.7E-05 23.3 1.3 19 360-379 2-20 (26)
79 PF13516 LRR_6: Leucine Rich r 48.1 13 0.00028 18.8 1.3 12 360-371 2-13 (24)
80 PF05725 FNIP: FNIP Repeat; I 45.1 45 0.00097 20.0 3.6 11 308-318 31-41 (44)
81 KOG3763 mRNA export factor TAP 30.7 25 0.00054 34.2 1.2 35 263-297 217-253 (585)
82 smart00365 LRR_SD22 Leucine-ri 29.0 41 0.0009 17.8 1.3 12 7-18 3-14 (26)
83 KOG3763 mRNA export factor TAP 27.2 42 0.0009 32.7 2.0 68 229-303 216-285 (585)
84 smart00368 LRR_RI Leucine rich 23.9 58 0.0013 17.3 1.4 11 7-17 3-13 (28)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=1.1e-24 Score=228.63 Aligned_cols=338 Identities=21% Similarity=0.294 Sum_probs=243.7
Q ss_pred CCCCCCCcEEEEcCcCC-------CCCCCccCCccC-CCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCcc
Q 043667 2 LEPHKNLEQFCISGYRG-------AKFPTWFGDSSF-SNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSE 73 (387)
Q Consensus 2 ~~~~~~L~~L~l~~~~~-------~~~p~~~~~~~l-~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~ 73 (387)
|+.+.+|+.|.++.... ..+|..+.. + ++|+.|++.++ .++.+|..-...+|+.|++.++ .++.++..
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~--lp~~Lr~L~~~~~-~l~~lP~~f~~~~L~~L~L~~s-~l~~L~~~ 629 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDY--LPPKLRLLRWDKY-PLRCMPSNFRPENLVKLQMQGS-KLEKLWDG 629 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhh--cCcccEEEEecCC-CCCCCCCcCCccCCcEEECcCc-cccccccc
Confidence 56778899888875432 234544433 3 36888888875 6678887556788899998887 56666554
Q ss_pred ccCCCcccCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCC---CCCccEEEeccCccccc
Q 043667 74 FYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEH---LPALEMLVIEACKELSV 150 (387)
Q Consensus 74 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~---~~~L~~L~l~~~~~l~~ 150 (387)
...+++|+.|+++++..+... ..+..+++|+.|++.+|..+. .+|.. +++|+.|++++|..+..
T Consensus 630 ------~~~l~~Lk~L~Ls~~~~l~~i------p~ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L~~L~L~~c~~L~~ 696 (1153)
T PLN03210 630 ------VHSLTGLRNIDLRGSKNLKEI------PDLSMATNLETLKLSDCSSLV-ELPSSIQYLNKLEDLDMSRCENLEI 696 (1153)
T ss_pred ------cccCCCCCEEECCCCCCcCcC------CccccCCcccEEEecCCCCcc-ccchhhhccCCCCEEeCCCCCCcCc
Confidence 346788888988877665444 223457888999998887776 56654 57888888888875541
Q ss_pred --cccCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCc------ccc
Q 043667 151 --SVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYI------WKS 222 (387)
Q Consensus 151 --~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~------~~~ 222 (387)
....+++|+.|++++|..+.... ...++|++|++.++. +..+|.. -.+++|++ |.+..+... ..+
T Consensus 697 Lp~~i~l~sL~~L~Lsgc~~L~~~p--~~~~nL~~L~L~~n~-i~~lP~~--~~l~~L~~--L~l~~~~~~~l~~~~~~l 769 (1153)
T PLN03210 697 LPTGINLKSLYRLNLSGCSRLKSFP--DISTNISWLDLDETA-IEEFPSN--LRLENLDE--LILCEMKSEKLWERVQPL 769 (1153)
T ss_pred cCCcCCCCCCCEEeCCCCCCccccc--cccCCcCeeecCCCc-ccccccc--cccccccc--ccccccchhhcccccccc
Confidence 11257888889988887655221 234678888888654 4444433 14566666 655543211 111
Q ss_pred cccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCce
Q 043667 223 HDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLV 302 (387)
Q Consensus 223 ~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~ 302 (387)
+......+++|+.|++++|+.+..+|. ++..+ ++|+.|++.+|..++.+|..+ .+++|+.|++++|..++
T Consensus 770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~-----si~~L----~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 770 TPLMTMLSPSLTRLFLSDIPSLVELPS-----SIQNL----HKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR 839 (1153)
T ss_pred chhhhhccccchheeCCCCCCccccCh-----hhhCC----CCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc
Confidence 111123457899999999888887765 46666 899999999999999888766 78999999999999888
Q ss_pred ecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCC-CCCCCccEEeecCCcccccccc
Q 043667 303 SFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGV-QLPPSLKRLDIWNCDNIRTLTV 378 (387)
Q Consensus 303 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~C~~l~~l~~ 378 (387)
.++. .+++|+.|++++ +.++.+|..+..+++ |+.|++.+|++++.++.. ..+++|+.+++++|++|+.++.
T Consensus 840 ~~p~--~~~nL~~L~Ls~-n~i~~iP~si~~l~~--L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 840 TFPD--ISTNISDLNLSR-TGIEEVPWWIEKFSN--LSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred cccc--cccccCEeECCC-CCCccChHHHhcCCC--CCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 8774 347899999988 468899988777888 999999999999998876 5678899999999999987753
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=5.2e-23 Score=215.95 Aligned_cols=324 Identities=22% Similarity=0.299 Sum_probs=243.8
Q ss_pred CCCccEEEeecCC--C----CCCCCC-cCCcC-CCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccc
Q 043667 30 FSNLVTLKFEYCG--M----CPTLPS-VGQLP-SLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWI 101 (387)
Q Consensus 30 l~~L~~L~l~~c~--~----~~~l~~-~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 101 (387)
+++|+.|.+.... . ...+|. +..++ +|+.|.+.++ .++.+|..+ .+.+|++|++.++. +...+
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f-------~~~~L~~L~L~~s~-l~~L~ 627 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF-------RPENLVKLQMQGSK-LEKLW 627 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC-------CccCCcEEECcCcc-ccccc
Confidence 8999999996531 1 113443 45554 6999999998 677777654 36899999999753 44332
Q ss_pred cCcCCCCccCCCCcceEeeccCcccccccCC--CCCCccEEEeccCccc---cccccCCCCcceEEEcCccceeEecccc
Q 043667 102 PLRSGQGVEGFPKLRELHILRCSKLQGTFPE--HLPALEMLVIEACKEL---SVSVSSLPALCKLKIGGCKKVVWRSATD 176 (387)
Q Consensus 102 ~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~--~~~~L~~L~l~~~~~l---~~~~~~~~~L~~L~i~~~~~~~~~~~~~ 176 (387)
.++..+++|+.++++++..+. .+|. .+++|+.|++.+|..+ +..+..+++|+.|++++|..++......
T Consensus 628 -----~~~~~l~~Lk~L~Ls~~~~l~-~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 628 -----DGVHSLTGLRNIDLRGSKNLK-EIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred -----cccccCCCCCEEECCCCCCcC-cCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC
Confidence 445568999999999886665 5664 3789999999998754 4667889999999999998777332223
Q ss_pred cCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHH
Q 043667 177 HLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQ 256 (387)
Q Consensus 177 ~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 256 (387)
.+++|+.|++++|..+..++.. .++|+. +.+.++. ++.+|..+ .+++|++|.+.++... .++..... ..
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~--L~L~~n~-i~~lP~~~--~l~~L~~L~l~~~~~~-~l~~~~~~-l~ 770 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPDI----STNISW--LDLDETA-IEEFPSNL--RLENLDELILCEMKSE-KLWERVQP-LT 770 (1153)
T ss_pred CCCCCCEEeCCCCCCccccccc----cCCcCe--eecCCCc-cccccccc--cccccccccccccchh-hccccccc-cc
Confidence 6889999999999887776543 456677 8887654 66777652 5788999998875421 11110000 00
Q ss_pred hhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccCCC
Q 043667 257 QQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTN 336 (387)
Q Consensus 257 ~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~ 336 (387)
......+++|++|++++|+.+..+|..++.+++|+.|++++|.+++.+|.....++|+.|++++|..++.+|.. ..+
T Consensus 771 ~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~n 847 (1153)
T PLN03210 771 PLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STN 847 (1153)
T ss_pred hhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccc
Confidence 00011247999999999999999999999999999999999999999997765699999999999999998875 456
Q ss_pred CCcceEecccCcccccccCC-CCCCCccEEeecCCccccccccccc-cccC
Q 043667 337 SSLETLKIERCRSLTYIAGV-QLPPSLKRLDIWNCDNIRTLTVEEG-VQSS 385 (387)
Q Consensus 337 ~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~C~~l~~l~~~~~-~~~~ 385 (387)
|+.|++++ +.++.+|.. ..+++|++|++++|++++.+|...+ ++.+
T Consensus 848 --L~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L 895 (1153)
T PLN03210 848 --ISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHL 895 (1153)
T ss_pred --cCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCC
Confidence 99999999 589998877 7789999999999999999997653 4443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=1.7e-23 Score=218.74 Aligned_cols=352 Identities=16% Similarity=0.130 Sum_probs=173.7
Q ss_pred CCCCCCCcEEEEcCcCCC-CCCCccCCccCCCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCCCCceEeCccccCCCc
Q 043667 2 LEPHKNLEQFCISGYRGA-KFPTWFGDSSFSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGA 79 (387)
Q Consensus 2 ~~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 79 (387)
+...++|++|+++++... .+|.+++. +++|++|++++|.....+|. ++++++|++|++.++.....++..
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~------ 231 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTN--LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE------ 231 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhh--CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh------
Confidence 345678999999988754 56887776 88899999988755555664 778888888888877433333333
Q ss_pred ccCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCC---CCCccEEEeccCc---ccccccc
Q 043667 80 AIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEH---LPALEMLVIEACK---ELSVSVS 153 (387)
Q Consensus 80 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~---~~~L~~L~l~~~~---~l~~~~~ 153 (387)
+..+++|++|++.++.- .+..+ ..+..+++|+.|+++++ .+.+.+|.. +++|+.|++++|. .++..+.
T Consensus 232 l~~l~~L~~L~L~~n~l-~~~~p----~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 232 IGGLTSLNHLDLVYNNL-TGPIP----SSLGNLKNLQYLFLYQN-KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred HhcCCCCCEEECcCcee-ccccC----hhHhCCCCCCEEECcCC-eeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence 23466777777765432 11111 22334555666665554 222233322 3455555555443 1222334
Q ss_pred CCCCcceEEEcCcccee-EecccccCCCCcEEeccCCCCcccccCCCCCCCcccccee----------------------
Q 043667 154 SLPALCKLKIGGCKKVV-WRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELI---------------------- 210 (387)
Q Consensus 154 ~~~~L~~L~i~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~---------------------- 210 (387)
.+++|+.|++.++.... .+..+..+++|+.|+++++.-...++.. ...+++|+.|.
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~ 384 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN-LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK 384 (968)
T ss_pred CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH-HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCE
Confidence 44455555554443222 2223333444444444443222111111 12222333300
Q ss_pred EEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCc
Q 043667 211 LSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSL 290 (387)
Q Consensus 211 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L 290 (387)
+.+..+.....+|.. ++.+++|+.|++.+|.....++. .+..+ ++|+.|+++++.-...++..+..+++|
T Consensus 385 L~l~~n~l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p~-----~~~~l----~~L~~L~Ls~N~l~~~~~~~~~~l~~L 454 (968)
T PLN00113 385 LILFSNSLEGEIPKS-LGACRSLRRVRLQDNSFSGELPS-----EFTKL----PLVYFLDISNNNLQGRINSRKWDMPSL 454 (968)
T ss_pred EECcCCEecccCCHH-HhCCCCCCEEECcCCEeeeECCh-----hHhcC----CCCCEEECcCCcccCccChhhccCCCC
Confidence 333333222222222 33455556666555433222222 23333 445555554433222223233334444
Q ss_pred cEEEecCCCCceecCCC----------------------Cc--CCCceEEEeccCCCCCccccccccCCCCCcceEeccc
Q 043667 291 REIDIYDCSSLVSFPEV----------------------AL--PSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIER 346 (387)
Q Consensus 291 ~~L~l~~c~~l~~~~~~----------------------~~--~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~ 346 (387)
+.|++++|.-...++.. .+ .++|+.|++++|.....+|..+..+.+ |++|++++
T Consensus 455 ~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~Ls~ 532 (968)
T PLN00113 455 QMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKK--LVSLDLSH 532 (968)
T ss_pred cEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccC--CCEEECCC
Confidence 44444443222222211 11 156666666665544455655555566 77777777
Q ss_pred CcccccccCC-CCCCCccEEeecCCcccccccccc
Q 043667 347 CRSLTYIAGV-QLPPSLKRLDIWNCDNIRTLTVEE 380 (387)
Q Consensus 347 c~~l~~~~~~-~~~~~L~~L~l~~C~~l~~l~~~~ 380 (387)
|.-...+|.. ..+++|++|++++|.....+|...
T Consensus 533 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 567 (968)
T PLN00113 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567 (968)
T ss_pred CcccccCChhHhCcccCCEEECCCCcccccCChhH
Confidence 5322233333 455778888888776655677544
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=4.3e-23 Score=215.66 Aligned_cols=353 Identities=17% Similarity=0.146 Sum_probs=165.3
Q ss_pred CCCCCcEEEEcCcCCCC-CCCccCCccCCCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667 4 PHKNLEQFCISGYRGAK-FPTWFGDSSFSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI 81 (387)
Q Consensus 4 ~~~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 81 (387)
.+.+||+|+++++.... +|. + .+++|++|++++|.....+|. ++.+++|++|++.++.....++.. +.
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~--~--~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~------~~ 185 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR--G--SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS------LT 185 (968)
T ss_pred cCCCCCEEECcCCccccccCc--c--ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh------hh
Confidence 45677777777666542 332 1 266677777766533334443 666677777777666322233332 23
Q ss_pred CCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCC---CCCCccEEEeccCc---cccccccCC
Q 043667 82 PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPE---HLPALEMLVIEACK---ELSVSVSSL 155 (387)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~---~~~~L~~L~l~~~~---~l~~~~~~~ 155 (387)
.+++|++|++.++.-. ...+ ..+..+++|+.|+++++ .+.+.+|. .+++|+.|+++++. .++..++.+
T Consensus 186 ~l~~L~~L~L~~n~l~-~~~p----~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 259 (968)
T PLN00113 186 NLTSLEFLTLASNQLV-GQIP----RELGQMKSLKWIYLGYN-NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259 (968)
T ss_pred hCcCCCeeeccCCCCc-CcCC----hHHcCcCCccEEECcCC-ccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence 4556666666554321 1111 22233455555555544 22223332 23445555554443 122334444
Q ss_pred CCc------------------------ceEEEcCcccee-EecccccCCCCcEEeccCCCCcccccCCCCCCCcccccee
Q 043667 156 PAL------------------------CKLKIGGCKKVV-WRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELI 210 (387)
Q Consensus 156 ~~L------------------------~~L~i~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~ 210 (387)
++| ++|+++++.... .+..+..+++|+.|++.++......+.. ...+++|+.
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~-- 336 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA-LTSLPRLQV-- 336 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh-HhcCCCCCE--
Confidence 444 444444433221 2233334455555555444322222211 334455555
Q ss_pred EEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhh--------------------hhccCCccEEE
Q 043667 211 LSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQL--------------------CELSCRLEYLR 270 (387)
Q Consensus 211 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l--------------------~~~~~~L~~L~ 270 (387)
+.++++.....+|.. ++.+++|+.|+++++.-...++. ++..+ ...+++|+.|+
T Consensus 337 L~L~~n~l~~~~p~~-l~~~~~L~~L~Ls~n~l~~~~p~-----~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ 410 (968)
T PLN00113 337 LQLWSNKFSGEIPKN-LGKHNNLTVLDLSTNNLTGEIPE-----GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVR 410 (968)
T ss_pred EECcCCCCcCcCChH-HhCCCCCcEEECCCCeeEeeCCh-----hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEE
Confidence 555555433334433 44556666666665432222221 11111 00113444444
Q ss_pred eccCCCCCCcccccCCCCCccEEEecCCCCceecCCCC--cCCCceEEEeccCCCCCccccccccCCCCCcceEecccCc
Q 043667 271 LRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVA--LPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCR 348 (387)
Q Consensus 271 l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~ 348 (387)
+.+|.....+|..+..+++|+.|+++++ .+....... ..++|+.|++++|.....+|..+ ...+ |+.|++++|.
T Consensus 411 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~--L~~L~ls~n~ 486 (968)
T PLN00113 411 LQDNSFSGELPSEFTKLPLVYFLDISNN-NLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKR--LENLDLSRNQ 486 (968)
T ss_pred CcCCEeeeECChhHhcCCCCCEEECcCC-cccCccChhhccCCCCcEEECcCceeeeecCccc-cccc--ceEEECcCCc
Confidence 4443322233333444455555555442 222211111 12566667766665444555432 1234 7777877763
Q ss_pred ccccccCC-CCCCCccEEeecCCccccccccccc-cccC
Q 043667 349 SLTYIAGV-QLPPSLKRLDIWNCDNIRTLTVEEG-VQSS 385 (387)
Q Consensus 349 ~l~~~~~~-~~~~~L~~L~l~~C~~l~~l~~~~~-~~~~ 385 (387)
--..++.. ..+++|++|++++|.-...+|..++ ++.|
T Consensus 487 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 525 (968)
T PLN00113 487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL 525 (968)
T ss_pred cCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCC
Confidence 32334433 4567888888888765556765543 4443
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=7.6e-19 Score=161.28 Aligned_cols=79 Identities=16% Similarity=0.251 Sum_probs=46.5
Q ss_pred CCCcEEEEcCcCCCCC-CCccCCccCCCccEEEeecCCCCCCCCCcCCc-CCCcEEEecCCCCceEeCccccCCCcccCC
Q 043667 6 KNLEQFCISGYRGAKF-PTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQL-PSLKHLAVCGMTSVKRLGSEFYGKGAAIPF 83 (387)
Q Consensus 6 ~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 83 (387)
+.-+.|+++++....+ +..+-+ ++||+.+++.+ +.++.+|.++.. .+|+.|++.++ .+..+..+. +..+
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~n--l~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~-----L~~l 148 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYN--LPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRHN-LISSVTSEE-----LSAL 148 (873)
T ss_pred cceeeeeccccccccCcHHHHhc--CCcceeeeecc-chhhhcccccccccceeEEeeecc-ccccccHHH-----HHhH
Confidence 3445677777766554 444444 77777777776 377777765553 44777777766 444443322 3345
Q ss_pred CCcceeeccc
Q 043667 84 PRLETLRFDA 93 (387)
Q Consensus 84 ~~L~~L~l~~ 93 (387)
+.|++|+++.
T Consensus 149 ~alrslDLSr 158 (873)
T KOG4194|consen 149 PALRSLDLSR 158 (873)
T ss_pred hhhhhhhhhh
Confidence 5666666553
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=6.3e-19 Score=161.84 Aligned_cols=142 Identities=17% Similarity=0.193 Sum_probs=66.9
Q ss_pred CccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCc
Q 043667 32 NLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGV 109 (387)
Q Consensus 32 ~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i 109 (387)
.-++|+++++ ++.+... +-+++||+.+.+.++ .++.||.- .....+|+.|++.+.. +..... ..+
T Consensus 79 ~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f------~~~sghl~~L~L~~N~-I~sv~s----e~L 145 (873)
T KOG4194|consen 79 QTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRF------GHESGHLEKLDLRHNL-ISSVTS----EEL 145 (873)
T ss_pred ceeeeecccc-ccccCcHHHHhcCCcceeeeeccc-hhhhcccc------cccccceeEEeeeccc-cccccH----HHH
Confidence 4455666663 5544442 556666666666666 55555542 1223456666665421 111111 222
Q ss_pred cCCCCcceEeeccCcccccccCCC-C---CCccEEEeccCcccc---ccccCCCCcceEEEcCccceeEe-cccccCCCC
Q 043667 110 EGFPKLRELHILRCSKLQGTFPEH-L---PALEMLVIEACKELS---VSVSSLPALCKLKIGGCKKVVWR-SATDHLGSQ 181 (387)
Q Consensus 110 ~~~~~L~~L~l~~~~~l~~~~~~~-~---~~L~~L~l~~~~~l~---~~~~~~~~L~~L~i~~~~~~~~~-~~~~~~~~L 181 (387)
..++.|+.|+++.+. +. ++|.. + .++++|++.+...-. ..+..+.+|..|.++.+...+.+ ..++.+++|
T Consensus 146 ~~l~alrslDLSrN~-is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 146 SALPALRSLDLSRNL-IS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKL 223 (873)
T ss_pred HhHhhhhhhhhhhch-hh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchh
Confidence 245666666666542 21 23321 2 246666665543211 33444455555555554333322 223345555
Q ss_pred cEEeccC
Q 043667 182 NSVVCRD 188 (387)
Q Consensus 182 ~~L~l~~ 188 (387)
+.|++..
T Consensus 224 ~~LdLnr 230 (873)
T KOG4194|consen 224 ESLDLNR 230 (873)
T ss_pred hhhhccc
Confidence 5555543
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.70 E-value=4e-19 Score=164.47 Aligned_cols=335 Identities=18% Similarity=0.249 Sum_probs=199.1
Q ss_pred CCCCcEEEEcCcC--CCCCCCccCCccCCCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667 5 HKNLEQFCISGYR--GAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI 81 (387)
Q Consensus 5 ~~~L~~L~l~~~~--~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 81 (387)
.+=.|-.+++|+. +..+|+.+.. ++.++-|.+.. ..+..+|. ++.+.+|++|.+.++ .+..+-.+ +.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~q--Mt~~~WLkLnr-t~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGE------Ls 75 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQ--MTQMTWLKLNR-TKLEQVPEELSRLQKLEHLSMAHN-QLISVHGE------LS 75 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHH--hhheeEEEech-hhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhh------hc
Confidence 4456778888775 4578998876 99999999988 58889996 999999999999998 55544332 45
Q ss_pred CCCCcceeeccccCCcccc-ccCcCCCCccCCCCcceEeeccCcccccccCCCC---CCccEEEeccCc--ccc-ccccC
Q 043667 82 PFPRLETLRFDAMLGWEDW-IPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHL---PALEMLVIEACK--ELS-VSVSS 154 (387)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~-~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~---~~L~~L~l~~~~--~l~-~~~~~ 154 (387)
.+|.|+.+.+.+. +++.. .+ ..|-.+..|..|+++.+ +++ +.|..+ .++-.|++++.. .++ ..+.+
T Consensus 76 ~Lp~LRsv~~R~N-~LKnsGiP----~diF~l~dLt~lDLShN-qL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfin 148 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDN-NLKNSGIP----TDIFRLKDLTILDLSHN-QLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFIN 148 (1255)
T ss_pred cchhhHHHhhhcc-ccccCCCC----chhcccccceeeecchh-hhh-hcchhhhhhcCcEEEEcccCccccCCchHHHh
Confidence 7888888887753 22221 11 33335777888888775 565 566554 355666666543 222 23445
Q ss_pred CCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcc-cccCCCCCCCccccceeEEEcCCCC-cccccccccccCCC
Q 043667 155 LPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQV-FLAGPLKPQLPKLEELILSTKEQTY-IWKSHDGLLQDICS 232 (387)
Q Consensus 155 ~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~l~~L~~l~L~l~~~~~-~~~~~~~~l~~~~~ 232 (387)
++.|-.|+++.+..-..+.-+..+.+|++|.+++.+-.. .+.. .++++.|+. +++++... +..+|.. +..+.+
T Consensus 149 LtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ--LPsmtsL~v--Lhms~TqRTl~N~Pts-ld~l~N 223 (1255)
T KOG0444|consen 149 LTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ--LPSMTSLSV--LHMSNTQRTLDNIPTS-LDDLHN 223 (1255)
T ss_pred hHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc--Cccchhhhh--hhcccccchhhcCCCc-hhhhhh
Confidence 566666666665544455555556666666666543211 0000 233444444 55554332 2344544 344555
Q ss_pred ccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCC-----
Q 043667 233 LKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEV----- 307 (387)
Q Consensus 233 L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~----- 307 (387)
|..++++. +++..+|+. +=.+ ++|++|++++ +.++++..+...+.+|++|+++. +.++.+|..
T Consensus 224 L~dvDlS~-N~Lp~vPec-----ly~l----~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~ 291 (1255)
T KOG0444|consen 224 LRDVDLSE-NNLPIVPEC-----LYKL----RNLRRLNLSG-NKITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLT 291 (1255)
T ss_pred hhhccccc-cCCCcchHH-----Hhhh----hhhheeccCc-CceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhH
Confidence 55555553 344444332 2222 4555555554 23444444444444445555444 334433322
Q ss_pred ---------------Cc------CCCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCC-CCCCCccEE
Q 043667 308 ---------------AL------PSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGV-QLPPSLKRL 365 (387)
Q Consensus 308 ---------------~~------~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L 365 (387)
++ ...|+++...+ ++++-+|+++..|.. |+.|.+.+ +.+..+|.. ..++-|+.|
T Consensus 292 kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~k--L~kL~L~~-NrLiTLPeaIHlL~~l~vL 367 (1255)
T KOG0444|consen 292 KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVK--LQKLKLDH-NRLITLPEAIHLLPDLKVL 367 (1255)
T ss_pred HHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHH--HHHhcccc-cceeechhhhhhcCCccee
Confidence 11 14555655554 557777887777777 88888866 577778877 667888899
Q ss_pred eecCCccccccc
Q 043667 366 DIWNCDNIRTLT 377 (387)
Q Consensus 366 ~l~~C~~l~~l~ 377 (387)
|+.+.|+|--=|
T Consensus 368 DlreNpnLVMPP 379 (1255)
T KOG0444|consen 368 DLRENPNLVMPP 379 (1255)
T ss_pred eccCCcCccCCC
Confidence 998888875443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.59 E-value=3.5e-17 Score=151.78 Aligned_cols=310 Identities=17% Similarity=0.172 Sum_probs=176.8
Q ss_pred CCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCC--CCCCC-cCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667 5 HKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMC--PTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI 81 (387)
Q Consensus 5 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~--~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 81 (387)
+.+|+||.+..+...++...+.+ ++.|+.+.++.+ .+ ..+|+ |-++..|..|+++++ .++.+|... .
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~--Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~L------E 123 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSD--LPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNL------E 123 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhcc--chhhHHHhhhcc-ccccCCCCchhcccccceeeecchh-hhhhcchhh------h
Confidence 34566666665555554444444 666666666553 22 23443 566666666666666 555555431 1
Q ss_pred CCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCC---CCCccEEEeccCccccccccCC---
Q 043667 82 PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEH---LPALEMLVIEACKELSVSVSSL--- 155 (387)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~---~~~L~~L~l~~~~~l~~~~~~~--- 155 (387)
.-.++-.|++++. +++.... .-...+..|-.|+++++ .+. .+|.. +.+|+.|++++.+-....+..+
T Consensus 124 ~AKn~iVLNLS~N-~IetIPn----~lfinLtDLLfLDLS~N-rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsm 196 (1255)
T KOG0444|consen 124 YAKNSIVLNLSYN-NIETIPN----SLFINLTDLLFLDLSNN-RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSM 196 (1255)
T ss_pred hhcCcEEEEcccC-ccccCCc----hHHHhhHhHhhhccccc-hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccc
Confidence 2234444555541 1111110 00012444455555554 333 34432 3455666666655333223333
Q ss_pred CCcceEEEcCcccee--EecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCc
Q 043667 156 PALCKLKIGGCKKVV--WRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSL 233 (387)
Q Consensus 156 ~~L~~L~i~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L 233 (387)
++|+.|.+++..... ++..+..+.+|..++++. .++...|.- .-.+++|+. +.+++. .++.+... .+...+|
T Consensus 197 tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPec-ly~l~~Lrr--LNLS~N-~iteL~~~-~~~W~~l 270 (1255)
T KOG0444|consen 197 TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPEC-LYKLRNLRR--LNLSGN-KITELNMT-EGEWENL 270 (1255)
T ss_pred hhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHH-Hhhhhhhhe--eccCcC-ceeeeecc-HHHHhhh
Confidence 334444444433221 444555566666666663 233322221 223344444 666553 34444444 3456788
Q ss_pred cEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCC-CCCCcccccCCCCCccEEEecCCCCceecCCCCcC-C
Q 043667 234 KKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCK-GLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALP-S 311 (387)
Q Consensus 234 ~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~-~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~-~ 311 (387)
++|+++. +.+..+|. .+.++ ++|++|.+.++. ..+.+|.+++.+.+|+.+...+ +++.-+|++... +
T Consensus 271 EtLNlSr-NQLt~LP~-----avcKL----~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~ 339 (1255)
T KOG0444|consen 271 ETLNLSR-NQLTVLPD-----AVCKL----TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCV 339 (1255)
T ss_pred hhhcccc-chhccchH-----HHhhh----HHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhH
Confidence 9999987 46666655 46667 888888886643 2356888888888888888876 677777765544 7
Q ss_pred CceEEEeccCCCCCccccccccCCCCCcceEecccCcccc
Q 043667 312 KLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLT 351 (387)
Q Consensus 312 ~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~ 351 (387)
.|+.|.++ |+.+-.+|+.++-++. |+.|++...+++.
T Consensus 340 kL~kL~L~-~NrLiTLPeaIHlL~~--l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 340 KLQKLKLD-HNRLITLPEAIHLLPD--LKVLDLRENPNLV 376 (1255)
T ss_pred HHHHhccc-ccceeechhhhhhcCC--cceeeccCCcCcc
Confidence 88888886 5678889988888888 9999999888874
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.53 E-value=2.3e-16 Score=152.19 Aligned_cols=346 Identities=18% Similarity=0.147 Sum_probs=172.2
Q ss_pred CCCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCC-CcCCcCCCcEEEecCCCCceEeCccccCCCc---
Q 043667 4 PHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLP-SVGQLPSLKHLAVCGMTSVKRLGSEFYGKGA--- 79 (387)
Q Consensus 4 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~--- 79 (387)
...+|+.|.++.+-+.+.|..... +++|+++.|.+ ..+..+| .+..+++|++|+++++ ....+|........
T Consensus 66 ~l~~L~~ln~s~n~i~~vp~s~~~--~~~l~~lnL~~-n~l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~ 141 (1081)
T KOG0618|consen 66 LLSHLRQLNLSRNYIRSVPSSCSN--MRNLQYLNLKN-NRLQSLPASISELKNLQYLDLSFN-HFGPIPLVIEVLTAEEE 141 (1081)
T ss_pred hHHHHhhcccchhhHhhCchhhhh--hhcchhheecc-chhhcCchhHHhhhcccccccchh-ccCCCchhHHhhhHHHH
Confidence 346788888888888888876665 88899998876 4777888 4888888888888877 44444432111000
Q ss_pred --------ccCC--CCcceeeccccCCccccccCcCCCCccCCCCcce-EeeccC----------ccccc---------c
Q 043667 80 --------AIPF--PRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRE-LHILRC----------SKLQG---------T 129 (387)
Q Consensus 80 --------~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~-L~l~~~----------~~l~~---------~ 129 (387)
...+ ...+.+++........+ . .++ .++++ ++++++ .++.. .
T Consensus 142 ~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~-~----~~i---~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~ 213 (1081)
T KOG0618|consen 142 LAASNNEKIQRLGQTSIKKLDLRLNVLGGSF-L----IDI---YNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSE 213 (1081)
T ss_pred Hhhhcchhhhhhccccchhhhhhhhhcccch-h----cch---hhhheeeecccchhhhhhhhhccchhhhhhhhcccce
Confidence 0000 01222222211100000 0 111 11222 333322 22210 1
Q ss_pred cCCCCCCccEEEeccCccccccc-cCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccc
Q 043667 130 FPEHLPALEMLVIEACKELSVSV-SSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEE 208 (387)
Q Consensus 130 ~~~~~~~L~~L~l~~~~~l~~~~-~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 208 (387)
+--.-++|+.|+..++.-..... ..-.+|++++++......++.++..+++|+.+...... +..++.. .....+|+.
T Consensus 214 l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~r-i~~~~~L~~ 291 (1081)
T KOG0618|consen 214 LEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR-LVALPLR-ISRITSLVS 291 (1081)
T ss_pred EEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchh-HHhhHHH-HhhhhhHHH
Confidence 11113455556555555332111 22246788888877666677778888888888776532 2222222 223344444
Q ss_pred eeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHH---HHhhhhh--------------ccCCccEEEe
Q 043667 209 LILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKD---QQQQLCE--------------LSCRLEYLRL 271 (387)
Q Consensus 209 l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~l~~--------------~~~~L~~L~l 271 (387)
+.+..+ .++.+|.. .+.+.+|++|++.. +++.++|+..+.. ++..+-. ..+.|+.|.+
T Consensus 292 --l~~~~n-el~yip~~-le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyl 366 (1081)
T KOG0618|consen 292 --LSAAYN-ELEYIPPF-LEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYL 366 (1081)
T ss_pred --HHhhhh-hhhhCCCc-ccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHH
Confidence 333322 23334433 34466677777765 3555555422110 0000000 2234444444
Q ss_pred ccCCCCCC-cccccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCccccccccCCC------------
Q 043667 272 RYCKGLVK-LPQSSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPEAWMCDTN------------ 336 (387)
Q Consensus 272 ~~c~~l~~-~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~~~~~~~------------ 336 (387)
.++ .+++ ..+.+..+.+|+.|++++ +.+..||...+. +.|++|+++| ++++.+|..+..+..
T Consensus 367 anN-~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 367 ANN-HLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLL 443 (1081)
T ss_pred hcC-cccccchhhhccccceeeeeecc-cccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCcee
Confidence 442 2322 222344556666666665 455555544333 5556666655 345555533332322
Q ss_pred --------CCcceEecccCcccccccCC-CCC-CCccEEeecCCcc
Q 043667 337 --------SSLETLKIERCRSLTYIAGV-QLP-PSLKRLDIWNCDN 372 (387)
Q Consensus 337 --------~~L~~L~l~~c~~l~~~~~~-~~~-~~L~~L~l~~C~~ 372 (387)
++|+.+|++. ++++.+... ..+ ++|++||++|.++
T Consensus 444 ~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 444 SFPELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred echhhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 4477777765 566665544 344 6777777776553
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.53 E-value=8e-17 Score=141.99 Aligned_cols=112 Identities=20% Similarity=0.227 Sum_probs=73.6
Q ss_pred ccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcC-CCceEEEeccCCCCCcccc-ccccCCCCCc
Q 043667 262 LSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALP-SKLKKIEIRKCDALKSLPE-AWMCDTNSSL 339 (387)
Q Consensus 262 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~-~~L~~L~l~~c~~l~~l~~-~~~~~~~~~L 339 (387)
.+++|..|++++ +.+.++|..++.+-+|+.|+++. ++++.+|....- ..++.+-. ..+.++.++. ++..+.+ |
T Consensus 433 ~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~-NrFr~lP~~~y~lq~lEtlla-s~nqi~~vd~~~l~nm~n--L 507 (565)
T KOG0472|consen 433 QLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSF-NRFRMLPECLYELQTLETLLA-SNNQIGSVDPSGLKNMRN--L 507 (565)
T ss_pred hhhcceeeeccc-chhhhcchhhhhhhhhheecccc-cccccchHHHhhHHHHHHHHh-ccccccccChHHhhhhhh--c
Confidence 346777777765 34666776666666677777776 455555533222 23333333 3355666664 3666677 9
Q ss_pred ceEecccCcccccccCC-CCCCCccEEeecCCccccccccccc
Q 043667 340 ETLKIERCRSLTYIAGV-QLPPSLKRLDIWNCDNIRTLTVEEG 381 (387)
Q Consensus 340 ~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~C~~l~~l~~~~~ 381 (387)
.+|++.+ +.+..+|.. +...+|+.|++.|. .++ .|-..+
T Consensus 508 ~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gN-pfr-~Pr~~i 547 (565)
T KOG0472|consen 508 TTLDLQN-NDLQQIPPILGNMTNLRHLELDGN-PFR-QPRHQI 547 (565)
T ss_pred ceeccCC-CchhhCChhhccccceeEEEecCC-ccC-CCHHHH
Confidence 9999988 689999988 88999999999994 456 664443
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=2.9e-13 Score=133.91 Aligned_cols=257 Identities=22% Similarity=0.212 Sum_probs=152.3
Q ss_pred CCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCc
Q 043667 7 NLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRL 86 (387)
Q Consensus 7 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L 86 (387)
+-..|+++++...++|..+. ++|+.|++.++ .++.+|.. .++|++|++.++ .++.++. .+++|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~----~~L~~L~L~~N-~Lt~LP~l--p~~Lk~LdLs~N-~LtsLP~---------lp~sL 264 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP----AHITTLVIPDN-NLTSLPAL--PPELRTLEVSGN-QLTSLPV---------LPPGL 264 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh----cCCCEEEccCC-cCCCCCCC--CCCCcEEEecCC-ccCcccC---------ccccc
Confidence 34567788777777787553 36888888874 67777753 578888888877 6666653 14567
Q ss_pred ceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCCCccEEEeccCccccccccCCCCcceEEEcCc
Q 043667 87 ETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGGC 166 (387)
Q Consensus 87 ~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~i~~~ 166 (387)
++|++.++. +..... .+.+|+.|+++++ .++ .+|..+++|+.|+++++.
T Consensus 265 ~~L~Ls~N~-L~~Lp~--------lp~~L~~L~Ls~N-~Lt-~LP~~p~~L~~LdLS~N~-------------------- 313 (788)
T PRK15387 265 LELSIFSNP-LTHLPA--------LPSGLCKLWIFGN-QLT-SLPVLPPGLQELSVSDNQ-------------------- 313 (788)
T ss_pred ceeeccCCc-hhhhhh--------chhhcCEEECcCC-ccc-cccccccccceeECCCCc--------------------
Confidence 777766532 222211 1345666666665 344 455545556666655542
Q ss_pred cceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCccc
Q 043667 167 KKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQS 246 (387)
Q Consensus 167 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 246 (387)
...++. ..++|+.|.+.++ .+..++.. + ..|+. |.++++ .+..+|.. .++|+.|++++ +.+..
T Consensus 314 -L~~Lp~---lp~~L~~L~Ls~N-~L~~LP~l-p---~~Lq~--LdLS~N-~Ls~LP~l----p~~L~~L~Ls~-N~L~~ 376 (788)
T PRK15387 314 -LASLPA---LPSELCKLWAYNN-QLTSLPTL-P---SGLQE--LSVSDN-QLASLPTL----PSELYKLWAYN-NRLTS 376 (788)
T ss_pred -cccCCC---CcccccccccccC-cccccccc-c---cccce--EecCCC-ccCCCCCC----Ccccceehhhc-ccccc
Confidence 111111 0123334444332 11222211 1 23444 555542 34444432 34677777776 34555
Q ss_pred chhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCc
Q 043667 247 LVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKS 326 (387)
Q Consensus 247 ~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~ 326 (387)
++.. +.+|+.|+++++ .++.+|.. .++|+.|++++ +.++.+|. .+.+|+.|++++ +.++.
T Consensus 377 LP~l------------~~~L~~LdLs~N-~Lt~LP~l---~s~L~~LdLS~-N~LssIP~--l~~~L~~L~Ls~-NqLt~ 436 (788)
T PRK15387 377 LPAL------------PSGLKELIVSGN-RLTSLPVL---PSELKELMVSG-NRLTSLPM--LPSGLLSLSVYR-NQLTR 436 (788)
T ss_pred Cccc------------ccccceEEecCC-cccCCCCc---ccCCCEEEccC-CcCCCCCc--chhhhhhhhhcc-Ccccc
Confidence 5431 167888998874 57777753 36788899988 56777773 346788888887 55888
Q ss_pred cccccccCCCCCcceEecccCcccc
Q 043667 327 LPEAWMCDTNSSLETLKIERCRSLT 351 (387)
Q Consensus 327 l~~~~~~~~~~~L~~L~l~~c~~l~ 351 (387)
+|..+..+.. |+.|+++++ .++
T Consensus 437 LP~sl~~L~~--L~~LdLs~N-~Ls 458 (788)
T PRK15387 437 LPESLIHLSS--ETTVNLEGN-PLS 458 (788)
T ss_pred cChHHhhccC--CCeEECCCC-CCC
Confidence 8887777777 899999885 454
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.46 E-value=1.3e-15 Score=147.06 Aligned_cols=332 Identities=17% Similarity=0.194 Sum_probs=204.6
Q ss_pred CCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCCCCceEeCccccCCCcccCC
Q 043667 5 HKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPF 83 (387)
Q Consensus 5 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 83 (387)
..+|+.|+++++....+|..+.. ++.|+.|+++. +.+..+|. ++++.+|++|.+.+. .+...|.++ ..+
T Consensus 44 ~v~L~~l~lsnn~~~~fp~~it~--l~~L~~ln~s~-n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~------~~l 113 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSFPIQITL--LSHLRQLNLSR-NYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASI------SEL 113 (1081)
T ss_pred eeeeEEeeccccccccCCchhhh--HHHHhhcccch-hhHhhCchhhhhhhcchhheeccc-hhhcCchhH------Hhh
Confidence 45699999999999999999887 99999999988 47888885 888999999999977 777777653 457
Q ss_pred CCcceeeccccCCccccccCcCCCCccCCCC-------------------cceEeeccCcccccccCCCCCCccE-EEec
Q 043667 84 PRLETLRFDAMLGWEDWIPLRSGQGVEGFPK-------------------LRELHILRCSKLQGTFPEHLPALEM-LVIE 143 (387)
Q Consensus 84 ~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~-------------------L~~L~l~~~~~l~~~~~~~~~~L~~-L~l~ 143 (387)
.+|+.|+++... +..... -+..+.. ++.+++... .+.+.++.....++. ++++
T Consensus 114 knl~~LdlS~N~-f~~~Pl-----~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n-~l~~~~~~~i~~l~~~ldLr 186 (1081)
T KOG0618|consen 114 KNLQYLDLSFNH-FGPIPL-----VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLN-VLGGSFLIDIYNLTHQLDLR 186 (1081)
T ss_pred hcccccccchhc-cCCCch-----hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhh-hcccchhcchhhhheeeecc
Confidence 788888887532 111110 0011111 333333332 222234443444554 6666
Q ss_pred cCccccccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCccccc
Q 043667 144 ACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSH 223 (387)
Q Consensus 144 ~~~~l~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~ 223 (387)
........+..+++|+.+....+.... ....-++++.|....+.-........+..+.+ +.+++ ..+..+|
T Consensus 187 ~N~~~~~dls~~~~l~~l~c~rn~ls~---l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~-----~dis~-n~l~~lp 257 (1081)
T KOG0618|consen 187 YNEMEVLDLSNLANLEVLHCERNQLSE---LEISGPSLTALYADHNPLTTLDVHPVPLNLQY-----LDISH-NNLSNLP 257 (1081)
T ss_pred cchhhhhhhhhccchhhhhhhhcccce---EEecCcchheeeeccCcceeecccccccccee-----eecch-hhhhcch
Confidence 554444455566666666554432222 11234777788777765543333222333443 66655 3456677
Q ss_pred ccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCcee
Q 043667 224 DGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVS 303 (387)
Q Consensus 224 ~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ 303 (387)
.+...+++|+.++..+ +.+..++.+ +..+ .+|++|.+..| .++.+|+....+.+|++|++.. +++..
T Consensus 258 -~wi~~~~nle~l~~n~-N~l~~lp~r-----i~~~----~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~-N~L~~ 324 (1081)
T KOG0618|consen 258 -EWIGACANLEALNANH-NRLVALPLR-----ISRI----TSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQS-NNLPS 324 (1081)
T ss_pred -HHHHhcccceEecccc-hhHHhhHHH-----Hhhh----hhHHHHHhhhh-hhhhCCCcccccceeeeeeehh-ccccc
Confidence 5677899999999987 455555543 3333 67777777764 4777887777788888888876 56766
Q ss_pred cCCCCcC---CCceEEEeccCCCCCcc-------------------------ccccccCCCCCcceEecccCcccccccC
Q 043667 304 FPEVALP---SKLKKIEIRKCDALKSL-------------------------PEAWMCDTNSSLETLKIERCRSLTYIAG 355 (387)
Q Consensus 304 ~~~~~~~---~~L~~L~l~~c~~l~~l-------------------------~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 355 (387)
+|...+. .+|+.++.+. ..+..+ ...+.++.. |+.|++++ +.+..||.
T Consensus 325 lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h--LKVLhLsy-NrL~~fpa 400 (1081)
T KOG0618|consen 325 LPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKH--LKVLHLSY-NRLNSFPA 400 (1081)
T ss_pred cchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCcccccchhhhccccc--eeeeeecc-cccccCCH
Confidence 6543221 2233333322 122221 122333444 88888888 57777776
Q ss_pred C--CCCCCccEEeecCCcccccccccc
Q 043667 356 V--QLPPSLKRLDIWNCDNIRTLTVEE 380 (387)
Q Consensus 356 ~--~~~~~L~~L~l~~C~~l~~l~~~~ 380 (387)
. ..+..|+.|+++| ++|++||...
T Consensus 401 s~~~kle~LeeL~LSG-NkL~~Lp~tv 426 (1081)
T KOG0618|consen 401 SKLRKLEELEELNLSG-NKLTTLPDTV 426 (1081)
T ss_pred HHHhchHHhHHHhccc-chhhhhhHHH
Confidence 6 5567778888888 7788887444
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.39 E-value=5e-12 Score=125.25 Aligned_cols=234 Identities=20% Similarity=0.185 Sum_probs=154.4
Q ss_pred CCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCC
Q 043667 6 KNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPR 85 (387)
Q Consensus 6 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 85 (387)
++|+.|.+.++....+|.. .++|++|++++| .++.+|.. .++|+.|++.++ .++.++. .+.+
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l-----p~~Lk~LdLs~N-~LtsLP~l--p~sL~~L~Ls~N-~L~~Lp~---------lp~~ 283 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL-----PPELRTLEVSGN-QLTSLPVL--PPGLLELSIFSN-PLTHLPA---------LPSG 283 (788)
T ss_pred cCCCEEEccCCcCCCCCCC-----CCCCcEEEecCC-ccCcccCc--ccccceeeccCC-chhhhhh---------chhh
Confidence 5899999999999998863 578999999985 88888863 579999999988 5666654 2467
Q ss_pred cceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCCCccEEEeccCccccccccCCCCcceEEEcC
Q 043667 86 LETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLPALEMLVIEACKELSVSVSSLPALCKLKIGG 165 (387)
Q Consensus 86 L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~i~~ 165 (387)
|+.|.+.++ .+..... .+++|+.|+++++ .+. .+|...+.|+.|.+.++..- .+..++
T Consensus 284 L~~L~Ls~N-~Lt~LP~--------~p~~L~~LdLS~N-~L~-~Lp~lp~~L~~L~Ls~N~L~--~LP~lp--------- 341 (788)
T PRK15387 284 LCKLWIFGN-QLTSLPV--------LPPGLQELSVSDN-QLA-SLPALPSELCKLWAYNNQLT--SLPTLP--------- 341 (788)
T ss_pred cCEEECcCC-ccccccc--------cccccceeECCCC-ccc-cCCCCcccccccccccCccc--cccccc---------
Confidence 888988874 3333321 2578999999987 555 46654556777766654311 111111
Q ss_pred ccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcc
Q 043667 166 CKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQ 245 (387)
Q Consensus 166 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 245 (387)
++|+.|+++++ .+..+|.. + ++|+. |.+..+ .+..+|.. ..+|+.|+++++ .+.
T Consensus 342 -------------~~Lq~LdLS~N-~Ls~LP~l-p---~~L~~--L~Ls~N-~L~~LP~l----~~~L~~LdLs~N-~Lt 395 (788)
T PRK15387 342 -------------SGLQELSVSDN-QLASLPTL-P---SELYK--LWAYNN-RLTSLPAL----PSGLKELIVSGN-RLT 395 (788)
T ss_pred -------------cccceEecCCC-ccCCCCCC-C---cccce--ehhhcc-ccccCccc----ccccceEEecCC-ccc
Confidence 23444444432 22223221 2 22333 444432 34445532 357999999985 566
Q ss_pred cchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCc-CCCceEEEeccCC
Q 043667 246 SLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVAL-PSKLKKIEIRKCD 322 (387)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~l~~c~ 322 (387)
.++.. +++|+.|+++++ .++.+|.. ..+|+.|++++ +.++.+|.... .++|+.|++++++
T Consensus 396 ~LP~l------------~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 396 SLPVL------------PSELKELMVSGN-RLTSLPML---PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CCCCc------------ccCCCEEEccCC-cCCCCCcc---hhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 55532 278999999985 47778753 35788999988 67888886432 2899999999865
No 14
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.37 E-value=6.4e-15 Score=130.78 Aligned_cols=108 Identities=24% Similarity=0.316 Sum_probs=59.3
Q ss_pred CCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCcc-CCCCcceEeeccCcccccc----
Q 043667 55 SLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVE-GFPKLRELHILRCSKLQGT---- 129 (387)
Q Consensus 55 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~-~~~~L~~L~l~~~~~l~~~---- 129 (387)
.|+.|.++||..+.+-+...+ ...+|++++|.+.+|.++++... ..+. .+++|+++.+..|..+++.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~----~~~CpnIehL~l~gc~~iTd~s~----~sla~~C~~l~~l~L~~c~~iT~~~Lk~ 210 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTF----ASNCPNIEHLALYGCKKITDSSL----LSLARYCRKLRHLNLHSCSSITDVSLKY 210 (483)
T ss_pred ccccccccccccCCcchhhHH----hhhCCchhhhhhhcceeccHHHH----HHHHHhcchhhhhhhcccchhHHHHHHH
Confidence 466777777755544433322 23466677777666666555433 2332 5667777777766665532
Q ss_pred cCCCCCCccEEEeccCcccc-----ccccCCCCcceEEEcCcccee
Q 043667 130 FPEHLPALEMLVIEACKELS-----VSVSSLPALCKLKIGGCKKVV 170 (387)
Q Consensus 130 ~~~~~~~L~~L~l~~~~~l~-----~~~~~~~~L~~L~i~~~~~~~ 170 (387)
+.+.+++|+.+++++|+.+. ....++..++.+...||....
T Consensus 211 la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~ 256 (483)
T KOG4341|consen 211 LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE 256 (483)
T ss_pred HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc
Confidence 33456777777777776554 223344445555444554444
No 15
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.34 E-value=1.8e-14 Score=127.89 Aligned_cols=281 Identities=14% Similarity=0.230 Sum_probs=194.3
Q ss_pred CCcceeeccccCCccccccCcCCCCcc-CCCCcceEeeccCcccccc----cCCCCCCccEEEeccCccccc-----ccc
Q 043667 84 PRLETLRFDAMLGWEDWIPLRSGQGVE-GFPKLRELHILRCSKLQGT----FPEHLPALEMLVIEACKELSV-----SVS 153 (387)
Q Consensus 84 ~~L~~L~l~~~~~l~~~~~~~~~~~i~-~~~~L~~L~l~~~~~l~~~----~~~~~~~L~~L~l~~~~~l~~-----~~~ 153 (387)
..|+.|.+.+|....+... .... .+|++++|.+.+|.++++. +...+++|+.+.+..|..++. ...
T Consensus 138 g~lk~LSlrG~r~v~~ssl----rt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSL----RTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred cccccccccccccCCcchh----hHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 5789999999877665443 3332 6899999999999887642 345689999999999987762 345
Q ss_pred CCCCcceEEEcCcccee---EecccccCCCCcEEeccCCCCccc--ccCCCCCCCccccceeEEEcCCCCcccccccc-c
Q 043667 154 SLPALCKLKIGGCKKVV---WRSATDHLGSQNSVVCRDTSNQVF--LAGPLKPQLPKLEELILSTKEQTYIWKSHDGL-L 227 (387)
Q Consensus 154 ~~~~L~~L~i~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~-l 227 (387)
.+++|++++++.|+.+. +......+..++.+...||...+. +... -.....+.+ +.+.+|..++...... -
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~-~~~~~~i~~--lnl~~c~~lTD~~~~~i~ 290 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKA-AAYCLEILK--LNLQHCNQLTDEDLWLIA 290 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHH-hccChHhhc--cchhhhccccchHHHHHh
Confidence 78999999999988776 223334455677777778765442 1111 122233333 6666777666433211 1
Q ss_pred ccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccc--cCCCCCccEEEecCCCCceecC
Q 043667 228 QDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS--SLSLSSLREIDIYDCSSLVSFP 305 (387)
Q Consensus 228 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~~L~~L~l~~c~~l~~~~ 305 (387)
..+..|+.|+.++|..+.+.+ +..+...+++|+.|.+..|..+++.-.. -.+++.|+.+++.+|..+.+-.
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~-------l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t 363 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEV-------LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT 363 (483)
T ss_pred hhhhHhhhhcccCCCCCchHH-------HHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh
Confidence 247789999999998876653 3333344589999999999987765432 2378899999999987765542
Q ss_pred CCCcC---CCceEEEeccCCCCCcc-----ccccccCCCCCcceEecccCcccccccCC--CCCCCccEEeecCCccccc
Q 043667 306 EVALP---SKLKKIEIRKCDALKSL-----PEAWMCDTNSSLETLKIERCRSLTYIAGV--QLPPSLKRLDIWNCDNIRT 375 (387)
Q Consensus 306 ~~~~~---~~L~~L~l~~c~~l~~l-----~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~C~~l~~ 375 (387)
-.... +.||.+.++.|..+++- ...-..... |+.+.+.+|+.+++-... ...++|+.+++.+|-.+++
T Consensus 364 L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~--l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 364 LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEG--LEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccc--cceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 22222 88999999999877654 332233445 999999999998876655 5567999999999988877
Q ss_pred ccccc
Q 043667 376 LTVEE 380 (387)
Q Consensus 376 l~~~~ 380 (387)
=++..
T Consensus 442 ~~i~~ 446 (483)
T KOG4341|consen 442 EAISR 446 (483)
T ss_pred hhhHH
Confidence 66443
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.34 E-value=9.5e-15 Score=129.04 Aligned_cols=315 Identities=17% Similarity=0.165 Sum_probs=187.5
Q ss_pred CCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCc
Q 043667 7 NLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRL 86 (387)
Q Consensus 7 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L 86 (387)
.|++++...+....+|..++. +..|.-|++.. +++..+|.|+.+.-|++|.+..+ .++.++.+. ...++++
T Consensus 184 ~L~~ld~~~N~L~tlP~~lg~--l~~L~~LyL~~-Nki~~lPef~gcs~L~Elh~g~N-~i~~lpae~-----~~~L~~l 254 (565)
T KOG0472|consen 184 RLKHLDCNSNLLETLPPELGG--LESLELLYLRR-NKIRFLPEFPGCSLLKELHVGEN-QIEMLPAEH-----LKHLNSL 254 (565)
T ss_pred HHHhcccchhhhhcCChhhcc--hhhhHHHHhhh-cccccCCCCCccHHHHHHHhccc-HHHhhHHHH-----hcccccc
Confidence 466666666667777777776 77777777777 37777888777777777777766 666666654 2357888
Q ss_pred ceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCCC--CccEEEeccCcccc--c-cccCCC--Ccc
Q 043667 87 ETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHLP--ALEMLVIEACKELS--V-SVSSLP--ALC 159 (387)
Q Consensus 87 ~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~~--~L~~L~l~~~~~l~--~-~~~~~~--~L~ 159 (387)
..|++.+ .+++... +++..+.+|++|+++++ .++ .+|-.+. .|+.|.+.|.+--+ . .+.+-+ -|+
T Consensus 255 ~vLDLRd-Nklke~P-----de~clLrsL~rLDlSNN-~is-~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLK 326 (565)
T KOG0472|consen 255 LVLDLRD-NKLKEVP-----DEICLLRSLERLDLSNN-DIS-SLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLK 326 (565)
T ss_pred eeeeccc-cccccCc-----hHHHHhhhhhhhcccCC-ccc-cCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHH
Confidence 8888886 4455543 45556788888888876 333 4554443 45555555543111 0 000000 011
Q ss_pred eEEEc-Ccccee---------------EecccccCCCCcEEeccCCCCcccccCCC----------------------CC
Q 043667 160 KLKIG-GCKKVV---------------WRSATDHLGSQNSVVCRDTSNQVFLAGPL----------------------KP 201 (387)
Q Consensus 160 ~L~i~-~~~~~~---------------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----------------------~~ 201 (387)
+|.=. .++... .+....+.-+.+.|++++-. ++..|... |.
T Consensus 327 yLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q-lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk 405 (565)
T KOG0472|consen 327 YLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ-LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPK 405 (565)
T ss_pred HHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc-cccCCHHHHHHhhhcceEEEecccchHhhhhh
Confidence 11000 000000 00001112233334333211 11111000 22
Q ss_pred CCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcc
Q 043667 202 QLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLP 281 (387)
Q Consensus 202 ~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~ 281 (387)
.++.++++.=.+.-..+...++...+..+++|+.|++++ +-+.++|.+ +..+ ..|+.|+++.+ .+..+|
T Consensus 406 ~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e-----~~~l----v~Lq~LnlS~N-rFr~lP 474 (565)
T KOG0472|consen 406 RLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEE-----MGSL----VRLQTLNLSFN-RFRMLP 474 (565)
T ss_pred hhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchh-----hhhh----hhhheeccccc-ccccch
Confidence 333333311011112223344444567889999999997 577888875 3444 67999999985 677888
Q ss_pred cccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCC
Q 043667 282 QSSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGV 356 (387)
Q Consensus 282 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 356 (387)
..+.....++.+-.++ +.+..++..++. .+|..|++.+ +.+..+|..++++++ |++|++++. .++ .|..
T Consensus 475 ~~~y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~Lgnmtn--L~hLeL~gN-pfr-~Pr~ 545 (565)
T KOG0472|consen 475 ECLYELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTN--LRHLELDGN-PFR-QPRH 545 (565)
T ss_pred HHHhhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCC-CchhhCChhhccccc--eeEEEecCC-ccC-CCHH
Confidence 8777666677666665 788888876544 8999999987 669999999999999 999999994 555 4543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.17 E-value=1.5e-10 Score=115.44 Aligned_cols=114 Identities=11% Similarity=0.053 Sum_probs=52.4
Q ss_pred CCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCC
Q 043667 55 SLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHL 134 (387)
Q Consensus 55 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~ 134 (387)
+...|++.+. .++.+|... .+.|+.|++.++ ++..... . .+++|+.|+++++ .++ .+|..+
T Consensus 179 ~~~~L~L~~~-~LtsLP~~I--------p~~L~~L~Ls~N-~LtsLP~-----~--l~~nL~~L~Ls~N-~Lt-sLP~~l 239 (754)
T PRK15370 179 NKTELRLKIL-GLTTIPACI--------PEQITTLILDNN-ELKSLPE-----N--LQGNIKTLYANSN-QLT-SIPATL 239 (754)
T ss_pred CceEEEeCCC-CcCcCCccc--------ccCCcEEEecCC-CCCcCCh-----h--hccCCCEEECCCC-ccc-cCChhh
Confidence 4556666665 455555431 245666666653 3333221 1 1346777777655 344 445432
Q ss_pred -CCccEEEeccCccccccccCCCCcceEEEcCccceeEecccccCCCCcEEeccCC
Q 043667 135 -PALEMLVIEACKELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDT 189 (387)
Q Consensus 135 -~~L~~L~l~~~~~l~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~ 189 (387)
++|+.|+++++......-....+|+.|+++++....++..+ .++|+.|+++++
T Consensus 240 ~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N 293 (754)
T PRK15370 240 PDTIQEMELSINRITELPERLPSALQSLDLFHNKISCLPENL--PEELRYLSVYDN 293 (754)
T ss_pred hccccEEECcCCccCcCChhHhCCCCEEECcCCccCcccccc--CCCCcEEECCCC
Confidence 35666666655422110011134555555544322222211 234555555543
No 18
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.14 E-value=4e-11 Score=121.32 Aligned_cols=240 Identities=22% Similarity=0.210 Sum_probs=124.6
Q ss_pred CCCcEEEEcCcC--CCCCCCc-cCCccCCCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667 6 KNLEQFCISGYR--GAKFPTW-FGDSSFSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI 81 (387)
Q Consensus 6 ~~L~~L~l~~~~--~~~~p~~-~~~~~l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 81 (387)
++|+.|-+.++. ....+.. +. .++.|++||+++|.....+|. |+.+.+||+|++.++ .++.+|.. +.
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~--~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~------l~ 615 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFR--SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSG------LG 615 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHh--hCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchH------HH
Confidence 356777776654 3333332 22 278888888888888888885 888888888888888 67777766 35
Q ss_pred CCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCc-ccccccC---CCCCCccEEEeccCcc-ccccccCCC
Q 043667 82 PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCS-KLQGTFP---EHLPALEMLVIEACKE-LSVSVSSLP 156 (387)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~-~l~~~~~---~~~~~L~~L~l~~~~~-l~~~~~~~~ 156 (387)
.+..|.+|++.....+.... .....+++|++|.+.... ..+.... ..+.+|+.+.+..+.. +...+...+
T Consensus 616 ~Lk~L~~Lnl~~~~~l~~~~-----~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~ 690 (889)
T KOG4658|consen 616 NLKKLIYLNLEVTGRLESIP-----GILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMT 690 (889)
T ss_pred HHHhhheecccccccccccc-----chhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhH
Confidence 67777777777655544331 111247778887775432 1110011 2234444444433322 001111222
Q ss_pred Ccc----eEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccc-cCC
Q 043667 157 ALC----KLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQ-DIC 231 (387)
Q Consensus 157 ~L~----~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~-~~~ 231 (387)
+|. .+.+.++...+.......+.+|+.|.+.+|...+..... ....... .++
T Consensus 691 ~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~-----------------------~~~~~~~~~f~ 747 (889)
T KOG4658|consen 691 RLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEW-----------------------EESLIVLLCFP 747 (889)
T ss_pred HHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhccc-----------------------ccccchhhhHH
Confidence 222 222222222333344444555555555554432211100 0000001 245
Q ss_pred CccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccE
Q 043667 232 SLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLRE 292 (387)
Q Consensus 232 ~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~ 292 (387)
++..+.+.+|...+...+.. .+|+|+.|.+.+|..++++.+....+..+..
T Consensus 748 ~l~~~~~~~~~~~r~l~~~~----------f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~ 798 (889)
T KOG4658|consen 748 NLSKVSILNCHMLRDLTWLL----------FAPHLTSLSLVSCRLLEDIIPKLKALLELKE 798 (889)
T ss_pred HHHHHHhhccccccccchhh----------ccCcccEEEEecccccccCCCHHHHhhhccc
Confidence 56666666666665543321 1277888888877777766655444444444
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.11 E-value=6.1e-10 Score=111.10 Aligned_cols=115 Identities=14% Similarity=0.204 Sum_probs=74.7
Q ss_pred CCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCC
Q 043667 6 KNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPR 85 (387)
Q Consensus 6 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 85 (387)
.+...|+++++....+|..+. ++|+.|+++++ .++.+|. ...++|+.|++.++ .++.++..+ .++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip----~~L~~L~Ls~N-~LtsLP~-~l~~nL~~L~Ls~N-~LtsLP~~l--------~~~ 242 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP----EQITTLILDNN-ELKSLPE-NLQGNIKTLYANSN-QLTSIPATL--------PDT 242 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc----cCCcEEEecCC-CCCcCCh-hhccCCCEEECCCC-ccccCChhh--------hcc
Confidence 456788888888888887653 46888999885 7777775 22368899998887 677666432 356
Q ss_pred cceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCCC-CCccEEEeccC
Q 043667 86 LETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEHL-PALEMLVIEAC 145 (387)
Q Consensus 86 L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~~-~~L~~L~l~~~ 145 (387)
|+.|+++++. +.... ..+ ..+|+.|+++++ .+. .+|..+ ++|+.|+++++
T Consensus 243 L~~L~Ls~N~-L~~LP-----~~l--~s~L~~L~Ls~N-~L~-~LP~~l~~sL~~L~Ls~N 293 (754)
T PRK15370 243 IQEMELSINR-ITELP-----ERL--PSALQSLDLFHN-KIS-CLPENLPEELRYLSVYDN 293 (754)
T ss_pred ccEEECcCCc-cCcCC-----hhH--hCCCCEEECcCC-ccC-ccccccCCCCcEEECCCC
Confidence 8888887643 22221 111 346788888754 554 455433 36666666665
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.97 E-value=3.5e-10 Score=114.54 Aligned_cols=74 Identities=20% Similarity=0.195 Sum_probs=40.9
Q ss_pred cccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceec
Q 043667 227 LQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSF 304 (387)
Q Consensus 227 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~ 304 (387)
+..+.+|+.|.+.+|...+............. .|+++.++.+.+|+...... +..-.++|+.|.+.+|+.+..+
T Consensus 713 ~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~---~f~~l~~~~~~~~~~~r~l~-~~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 713 LGSLGNLEELSILDCGISEIVIEWEESLIVLL---CFPNLSKVSILNCHMLRDLT-WLLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred cccccCcceEEEEcCCCchhhcccccccchhh---hHHHHHHHHhhccccccccc-hhhccCcccEEEEecccccccC
Confidence 44677888888888766442211000000000 13566666677776555433 2334578888888887776654
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.91 E-value=6.2e-11 Score=105.02 Aligned_cols=271 Identities=15% Similarity=0.127 Sum_probs=162.0
Q ss_pred CCCCCCccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccC
Q 043667 18 GAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAML 95 (387)
Q Consensus 18 ~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 95 (387)
..++|..+.. +-..|++.. +.++.+|+ ++.+++||+|+++++ .++.|.+.- +.++++|.+|.+.+..
T Consensus 58 L~eVP~~LP~----~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~A-----F~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 58 LTEVPANLPP----ETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDA-----FKGLASLLSLVLYGNN 126 (498)
T ss_pred cccCcccCCC----cceEEEecc-CCcccCChhhccchhhhceeccccc-chhhcChHh-----hhhhHhhhHHHhhcCC
Confidence 3445654432 566788877 48888986 888999999999998 788876654 3467888888888877
Q ss_pred CccccccCcCCCCccCCCCcceEeeccCccccc---ccCCCCCCccEEEeccCcccc---ccccCCCCcceEEEcCccce
Q 043667 96 GWEDWIPLRSGQGVEGFPKLRELHILRCSKLQG---TFPEHLPALEMLVIEACKELS---VSVSSLPALCKLKIGGCKKV 169 (387)
Q Consensus 96 ~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~---~~~~~~~~L~~L~l~~~~~l~---~~~~~~~~L~~L~i~~~~~~ 169 (387)
++++... +.++++..++.|.+.-+ ...- .....++++..|.+.+...-. ..+..+..++.+.+..+..+
T Consensus 127 kI~~l~k----~~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i 201 (498)
T KOG4237|consen 127 KITDLPK----GAFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI 201 (498)
T ss_pred chhhhhh----hHhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc
Confidence 7777765 55566777777776532 2211 111235666666665543111 23445555666655443321
Q ss_pred eEecccccCCCCcEE------eccC--C--------CCcccccCCC-CCCCccccceeEEEcCCCCcccccccccccCCC
Q 043667 170 VWRSATDHLGSQNSV------VCRD--T--------SNQVFLAGPL-KPQLPKLEELILSTKEQTYIWKSHDGLLQDICS 232 (387)
Q Consensus 170 ~~~~~~~~~~~L~~L------~l~~--~--------~~l~~~~~~~-~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~ 232 (387)
.. .+++.+... ..++ | .....+.... ..+++.+.+ --...|......|..-++.+++
T Consensus 202 cd----CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s--~~~~~d~~d~~cP~~cf~~L~~ 275 (498)
T KOG4237|consen 202 CD----CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPS--RLSSEDFPDSICPAKCFKKLPN 275 (498)
T ss_pred cc----cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHH--hhccccCcCCcChHHHHhhccc
Confidence 10 001111000 0000 0 0000000000 011111111 1122333344455555788999
Q ss_pred ccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCccc-ccCCCCCccEEEecCCCCceecCCCCcC-
Q 043667 233 LKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ-SSLSLSSLREIDIYDCSSLVSFPEVALP- 310 (387)
Q Consensus 233 L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~- 310 (387)
|++|++++ +.++.+.+. +|+.. ..+++|.+.. ++++.+.. .++.+..|++|++.+ ++|+.+..+.|.
T Consensus 276 L~~lnlsn-N~i~~i~~~----aFe~~----a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~ 344 (498)
T KOG4237|consen 276 LRKLNLSN-NKITRIEDG----AFEGA----AELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGAFQT 344 (498)
T ss_pred ceEeccCC-Cccchhhhh----hhcch----hhhhhhhcCc-chHHHHHHHhhhccccceeeeecC-CeeEEEecccccc
Confidence 99999998 577776654 57766 8999999988 45766654 367889999999998 789998887776
Q ss_pred -CCceEEEeccC
Q 043667 311 -SKLKKIEIRKC 321 (387)
Q Consensus 311 -~~L~~L~l~~c 321 (387)
.+|.+|++.++
T Consensus 345 ~~~l~~l~l~~N 356 (498)
T KOG4237|consen 345 LFSLSTLNLLSN 356 (498)
T ss_pred cceeeeeehccC
Confidence 68888888754
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.86 E-value=8.4e-11 Score=92.67 Aligned_cols=152 Identities=19% Similarity=0.228 Sum_probs=118.1
Q ss_pred EEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCc
Q 043667 211 LSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSL 290 (387)
Q Consensus 211 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L 290 (387)
+.+++ +.++.+|.. ++.+.+|+.|++++ +.++++|. ++..+ ++|+.|++.- +.+..+|.+++++|.|
T Consensus 38 LtLSH-NKl~~vppn-ia~l~nlevln~~n-nqie~lp~-----~issl----~klr~lnvgm-nrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 38 LTLSH-NKLTVVPPN-IAELKNLEVLNLSN-NQIEELPT-----SISSL----PKLRILNVGM-NRLNILPRGFGSFPAL 104 (264)
T ss_pred hhccc-CceeecCCc-HHHhhhhhhhhccc-chhhhcCh-----hhhhc----hhhhheecch-hhhhcCccccCCCchh
Confidence 55554 345666766 56788999999987 57777766 46666 9999999874 6688899999999999
Q ss_pred cEEEecCCCCce--ecCCCCcC-CCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCC-CCCCCccEEe
Q 043667 291 REIDIYDCSSLV--SFPEVALP-SKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGV-QLPPSLKRLD 366 (387)
Q Consensus 291 ~~L~l~~c~~l~--~~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~ 366 (387)
+.|++.+. ++. ++|-.-|. ..|+.|.+++ +..+.+|..++..++ |+.|.+.+ +.+-.+|.. +-+.+|+.|.
T Consensus 105 evldltyn-nl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~--lqil~lrd-ndll~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 105 EVLDLTYN-NLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTN--LQILSLRD-NDLLSLPKEIGDLTRLRELH 179 (264)
T ss_pred hhhhcccc-ccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcc--eeEEeecc-CchhhCcHHHHHHHHHHHHh
Confidence 99999884 432 23322122 7788888887 458889988888899 99999999 578788877 7778999999
Q ss_pred ecCCccccccccccc
Q 043667 367 IWNCDNIRTLTVEEG 381 (387)
Q Consensus 367 l~~C~~l~~l~~~~~ 381 (387)
|.| ++++-+|.+.|
T Consensus 180 iqg-nrl~vlppel~ 193 (264)
T KOG0617|consen 180 IQG-NRLTVLPPELA 193 (264)
T ss_pred ccc-ceeeecChhhh
Confidence 999 88999998876
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.73 E-value=2.9e-10 Score=89.64 Aligned_cols=146 Identities=18% Similarity=0.265 Sum_probs=102.1
Q ss_pred CCCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCC
Q 043667 30 FSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQG 108 (387)
Q Consensus 30 l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 108 (387)
+++...|.++++ +++.+|+ |+.+.+|+.|++.++ +++++|.. ...+++|+.|.+. +..+.... .+
T Consensus 32 ~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nn-qie~lp~~------issl~klr~lnvg-mnrl~~lp-----rg 97 (264)
T KOG0617|consen 32 MSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNN-QIEELPTS------ISSLPKLRILNVG-MNRLNILP-----RG 97 (264)
T ss_pred hhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccc-hhhhcChh------hhhchhhhheecc-hhhhhcCc-----cc
Confidence 566777777774 6666654 777888888888777 77777665 2457777777766 22222221 45
Q ss_pred ccCCCCcceEeeccCcccccccCCC---CCCccEEEeccCc--cccccccCCCCcceEEEcCccceeEecccccCCCCcE
Q 043667 109 VEGFPKLRELHILRCSKLQGTFPEH---LPALEMLVIEACK--ELSVSVSSLPALCKLKIGGCKKVVWRSATDHLGSQNS 183 (387)
Q Consensus 109 i~~~~~L~~L~l~~~~~l~~~~~~~---~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~ 183 (387)
++.+|.|+.|+++.+.--...+|.. ++.|+-|.+.+.+ .++..++++++|+.|.+++++.++.+..++.++.|++
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lre 177 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRE 177 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHH
Confidence 5668888888887653333356654 4567767776544 4557788999999999999999998888888899999
Q ss_pred EeccCC
Q 043667 184 VVCRDT 189 (387)
Q Consensus 184 L~l~~~ 189 (387)
|++.+.
T Consensus 178 lhiqgn 183 (264)
T KOG0617|consen 178 LHIQGN 183 (264)
T ss_pred Hhcccc
Confidence 888864
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.70 E-value=3.1e-09 Score=97.23 Aligned_cols=132 Identities=21% Similarity=0.203 Sum_probs=68.6
Q ss_pred cccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCC-----CcccccCCCCCccEEEecCCCCc
Q 043667 227 LQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLV-----KLPQSSLSLSSLREIDIYDCSSL 301 (387)
Q Consensus 227 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~-----~~~~~~~~~~~L~~L~l~~c~~l 301 (387)
+..+++|++|++++|. +...........+... ++|+.|++++|. ++ .+...+..+++|+.|++++| .+
T Consensus 161 ~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~----~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l 233 (319)
T cd00116 161 LRANRDLKELNLANNG-IGDAGIRALAEGLKAN----CNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDN-NL 233 (319)
T ss_pred HHhCCCcCEEECcCCC-CchHHHHHHHHHHHhC----CCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCC-cC
Confidence 3445678888887753 3321111111123322 578888887764 33 22334556777888888775 34
Q ss_pred eecCCC----Cc---CCCceEEEeccCCCCC-----ccccccccCCCCCcceEecccCcccccccCC------CCC-CCc
Q 043667 302 VSFPEV----AL---PSKLKKIEIRKCDALK-----SLPEAWMCDTNSSLETLKIERCRSLTYIAGV------QLP-PSL 362 (387)
Q Consensus 302 ~~~~~~----~~---~~~L~~L~l~~c~~l~-----~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~------~~~-~~L 362 (387)
+..... .+ .+.|++|++.+|. ++ .+...+...+. |+.++++++ .+++.+.. ..+ +.|
T Consensus 234 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~--L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~ 309 (319)
T cd00116 234 TDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKES--LLELDLRGN-KFGEEGAQLLAESLLEPGNEL 309 (319)
T ss_pred chHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCC--ccEEECCCC-CCcHHHHHHHHHHHhhcCCch
Confidence 321100 11 1578888887764 43 22233333344 888888774 45432111 122 567
Q ss_pred cEEeecC
Q 043667 363 KRLDIWN 369 (387)
Q Consensus 363 ~~L~l~~ 369 (387)
++++|.+
T Consensus 310 ~~~~~~~ 316 (319)
T cd00116 310 ESLWVKD 316 (319)
T ss_pred hhcccCC
Confidence 7777665
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.63 E-value=1.9e-08 Score=92.06 Aligned_cols=159 Identities=21% Similarity=0.157 Sum_probs=93.4
Q ss_pred ccccceeEEEcCCCCcc----cccccccccC-CCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCC
Q 043667 204 PKLEELILSTKEQTYIW----KSHDGLLQDI-CSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLV 278 (387)
Q Consensus 204 ~~L~~l~L~l~~~~~~~----~~~~~~l~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~ 278 (387)
++|++ +.++++.... .+.. .+..+ ++|++|++++|.-... ........+... ++|++|++++|. ++
T Consensus 108 ~~L~~--L~ls~~~~~~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~~----~~L~~L~l~~n~-l~ 178 (319)
T cd00116 108 SSLQE--LKLNNNGLGDRGLRLLAK-GLKDLPPALEKLVLGRNRLEGA-SCEALAKALRAN----RDLKELNLANNG-IG 178 (319)
T ss_pred CcccE--EEeeCCccchHHHHHHHH-HHHhCCCCceEEEcCCCcCCch-HHHHHHHHHHhC----CCcCEEECcCCC-Cc
Confidence 34565 6666654321 1111 13445 8999999999754322 112222234444 789999999865 44
Q ss_pred -----CcccccCCCCCccEEEecCCCCceecCCC------CcCCCceEEEeccCCCCCc-----cccccccCCCCCcceE
Q 043667 279 -----KLPQSSLSLSSLREIDIYDCSSLVSFPEV------ALPSKLKKIEIRKCDALKS-----LPEAWMCDTNSSLETL 342 (387)
Q Consensus 279 -----~~~~~~~~~~~L~~L~l~~c~~l~~~~~~------~~~~~L~~L~l~~c~~l~~-----l~~~~~~~~~~~L~~L 342 (387)
.++..+..+++|+.|++++| .++..... ...++|++|++++|. +.+ +...+.. ..+.|++|
T Consensus 179 ~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~-~~~~L~~L 255 (319)
T cd00116 179 DAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLS-PNISLLTL 255 (319)
T ss_pred hHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhc-cCCCceEE
Confidence 23334556689999999986 44422211 112789999999975 543 1122111 11349999
Q ss_pred ecccCccccc-----ccCC-CCCCCccEEeecCCcccccc
Q 043667 343 KIERCRSLTY-----IAGV-QLPPSLKRLDIWNCDNIRTL 376 (387)
Q Consensus 343 ~l~~c~~l~~-----~~~~-~~~~~L~~L~l~~C~~l~~l 376 (387)
++++| .+++ +... ...++|++++++++ +++.-
T Consensus 256 ~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~ 293 (319)
T cd00116 256 SLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN-KFGEE 293 (319)
T ss_pred EccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHH
Confidence 99998 5542 2111 33478999999984 45533
No 26
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.57 E-value=4.3e-07 Score=83.36 Aligned_cols=63 Identities=17% Similarity=0.121 Sum_probs=34.7
Q ss_pred cCCCCcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCccccc
Q 043667 153 SSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSH 223 (387)
Q Consensus 153 ~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~ 223 (387)
..+++++.|++++|....++ .-.++|++|.+++|..+..++...+ ++|++ |.+.+|..+..+|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~LP---~nLe~--L~Ls~Cs~L~sLP 111 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLP---VLPNELTEITIENCNNLTTLPGSIP---EGLEK--LTVCHCPEISGLP 111 (426)
T ss_pred HHhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCcccCCchhh---hhhhh--eEccCcccccccc
Confidence 34567777887777333333 1234577777777766665554322 23444 6666665554433
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.52 E-value=3.4e-09 Score=94.20 Aligned_cols=122 Identities=16% Similarity=0.201 Sum_probs=68.8
Q ss_pred CCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccccccCCC-
Q 043667 55 SLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQGTFPEH- 133 (387)
Q Consensus 55 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~~~~~~~- 133 (387)
.-..+.++.+ +++.+|...| ..+++|+.|++++ .+++...+ +++..++.+..|.+.+..+++ .+|..
T Consensus 68 ~tveirLdqN-~I~~iP~~aF-----~~l~~LRrLdLS~-N~Is~I~p----~AF~GL~~l~~Lvlyg~NkI~-~l~k~~ 135 (498)
T KOG4237|consen 68 ETVEIRLDQN-QISSIPPGAF-----KTLHRLRRLDLSK-NNISFIAP----DAFKGLASLLSLVLYGNNKIT-DLPKGA 135 (498)
T ss_pred cceEEEeccC-CcccCChhhc-----cchhhhceecccc-cchhhcCh----HhhhhhHhhhHHHhhcCCchh-hhhhhH
Confidence 4556667766 7777776654 3577788888776 44555544 455456677777776655665 45532
Q ss_pred ---CCCccEEEeccCc---cccccccCCCCcceEEEcCccceeEec-ccccCCCCcEEeccC
Q 043667 134 ---LPALEMLVIEACK---ELSVSVSSLPALCKLKIGGCKKVVWRS-ATDHLGSQNSVVCRD 188 (387)
Q Consensus 134 ---~~~L~~L~l~~~~---~l~~~~~~~~~L~~L~i~~~~~~~~~~-~~~~~~~L~~L~l~~ 188 (387)
+..|+.|.+..+. .....+..++++..|.+.++....+.. .+..+..++.+++..
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQ 197 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhc
Confidence 3445555544332 112455666677777666654444333 333445555555544
No 28
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.51 E-value=3e-07 Score=84.41 Aligned_cols=136 Identities=23% Similarity=0.323 Sum_probs=89.2
Q ss_pred CccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCccc
Q 043667 203 LPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ 282 (387)
Q Consensus 203 l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~ 282 (387)
+.+++. |.+++| .++.+|. -.++|++|.+++|..+..++.. + +++|++|++++|..+..+|.
T Consensus 51 ~~~l~~--L~Is~c-~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~-----L------P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 51 ARASGR--LYIKDC-DIESLPV----LPNELTEITIENCNNLTTLPGS-----I------PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred hcCCCE--EEeCCC-CCcccCC----CCCCCcEEEccCCCCcccCCch-----h------hhhhhheEccCccccccccc
Confidence 466666 888887 6777762 2346899999888888776542 2 26888899988877776664
Q ss_pred ccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCC--CccccccccCCCCCcceEecccCcccccccCCCCCC
Q 043667 283 SSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDAL--KSLPEAWMCDTNSSLETLKIERCRSLTYIAGVQLPP 360 (387)
Q Consensus 283 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l--~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 360 (387)
+|+.|++.+ +....++ .+|++|+.|.+.+.... ..++.. -..+ |++|++++|..+ .+|. ..+.
T Consensus 113 ------sLe~L~L~~-n~~~~L~--~LPssLk~L~I~~~n~~~~~~lp~~--LPsS--Lk~L~Is~c~~i-~LP~-~LP~ 177 (426)
T PRK15386 113 ------SVRSLEIKG-SATDSIK--NVPNGLTSLSINSYNPENQARIDNL--ISPS--LKTLSLTGCSNI-ILPE-KLPE 177 (426)
T ss_pred ------ccceEEeCC-CCCcccc--cCcchHhheeccccccccccccccc--cCCc--ccEEEecCCCcc-cCcc-cccc
Confidence 467777753 3433333 45578888887543311 112211 1244 999999999755 3442 4678
Q ss_pred CccEEeecCCc
Q 043667 361 SLKRLDIWNCD 371 (387)
Q Consensus 361 ~L~~L~l~~C~ 371 (387)
+|++|+++.+.
T Consensus 178 SLk~L~ls~n~ 188 (426)
T PRK15386 178 SLQSITLHIEQ 188 (426)
T ss_pred cCcEEEecccc
Confidence 99999998753
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.51 E-value=1e-07 Score=77.88 Aligned_cols=110 Identities=18% Similarity=0.273 Sum_probs=35.4
Q ss_pred CCCCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccC
Q 043667 3 EPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIP 82 (387)
Q Consensus 3 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 82 (387)
..+.++|+|++.|+.+..+.. ++. .+.+|+.|++++| .++.+..+..+++|+.|+++++ .++.++..+ ...
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~-L~~-~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~N-~I~~i~~~l-----~~~ 86 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIEN-LGA-TLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSNN-RISSISEGL-----DKN 86 (175)
T ss_dssp --------------------S---T-T-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHH-----HHH
T ss_pred ccccccccccccccccccccc-hhh-hhcCCCEEECCCC-CCccccCccChhhhhhcccCCC-CCCccccch-----HHh
Confidence 345678999999999887753 432 2788999999995 8888888889999999999998 677665332 124
Q ss_pred CCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcc
Q 043667 83 FPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSK 125 (387)
Q Consensus 83 ~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~ 125 (387)
+|+|++|.+++ .++.++.. -..+..+++|+.|++.+++.
T Consensus 87 lp~L~~L~L~~-N~I~~l~~---l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 87 LPNLQELYLSN-NKISDLNE---LEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp -TT--EEE-TT-S---SCCC---CGGGGG-TT--EEE-TT-GG
T ss_pred CCcCCEEECcC-CcCCChHH---hHHHHcCCCcceeeccCCcc
Confidence 78899888875 33333311 02233577788888877654
No 30
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2.6e-09 Score=91.62 Aligned_cols=180 Identities=15% Similarity=0.079 Sum_probs=112.6
Q ss_pred CccEEEeccCc----cccccccCCCCcceEEEcCcccee-EecccccCCCCcEEeccCCCCcccccCCC-CCCCccccce
Q 043667 136 ALEMLVIEACK----ELSVSVSSLPALCKLKIGGCKKVV-WRSATDHLGSQNSVVCRDTSNQVFLAGPL-KPQLPKLEEL 209 (387)
Q Consensus 136 ~L~~L~l~~~~----~l~~~~~~~~~L~~L~i~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~l~~L~~l 209 (387)
.|+.++++... .+...+..|.+|+.|.+.|..... +...+..-.+|+++++++|.+.++..... .++++.|.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~- 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE- 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh-
Confidence 47777776643 222455677888888888754322 33344455788899988888776543222 567777777
Q ss_pred eEEEcCCCCcccccccccc-cCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCC-cccccCCC
Q 043667 210 ILSTKEQTYIWKSHDGLLQ-DICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK-LPQSSLSL 287 (387)
Q Consensus 210 ~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~-~~~~~~~~ 287 (387)
+.+++|...+.....+.. --++|+.|+++||.. .+... .+..+...+|+|..|++++|..++. +...+-.+
T Consensus 265 -LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rr--nl~~s----h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf 337 (419)
T KOG2120|consen 265 -LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRR--NLQKS----HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF 337 (419)
T ss_pred -cCchHhhccchhhhHHHhhhchhhhhhhhhhhHh--hhhhh----HHHHHHHhCCceeeeccccccccCchHHHHHHhc
Confidence 888887766543322222 246788888888643 22211 3444455678888888888876653 33345578
Q ss_pred CCccEEEecCCCCceecCCCCc--CCCceEEEeccCCC
Q 043667 288 SSLREIDIYDCSSLVSFPEVAL--PSKLKKIEIRKCDA 323 (387)
Q Consensus 288 ~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~~ 323 (387)
+.|++|.++.|..+..-....+ .|+|.+|++.||-.
T Consensus 338 ~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 338 NYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred chheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 8888888888876542211112 27888888888753
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.3e-07 Score=81.43 Aligned_cols=133 Identities=19% Similarity=0.305 Sum_probs=59.0
Q ss_pred cCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCc-ccccC-CCCCccEEEecCCCCceecCC
Q 043667 229 DICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL-PQSSL-SLSSLREIDIYDCSSLVSFPE 306 (387)
Q Consensus 229 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~-~~~~~-~~~~L~~L~l~~c~~l~~~~~ 306 (387)
+-.+|+.|+++.|..+.... ..-+...+..|.+|++++|.-.++. ...+. --++|..|++++|.+.-....
T Consensus 232 kN~~L~~lnlsm~sG~t~n~-------~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh 304 (419)
T KOG2120|consen 232 KNSNLVRLNLSMCSGFTENA-------LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSH 304 (419)
T ss_pred ccccceeeccccccccchhH-------HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhH
Confidence 44556666666555554432 2222223355555566555432221 11111 124555555555443211111
Q ss_pred CC-c---CCCceEEEeccCCCCCc-cccccccCCCCCcceEecccCcccccccC--CCCCCCccEEeecCC
Q 043667 307 VA-L---PSKLKKIEIRKCDALKS-LPEAWMCDTNSSLETLKIERCRSLTYIAG--VQLPPSLKRLDIWNC 370 (387)
Q Consensus 307 ~~-~---~~~L~~L~l~~c~~l~~-l~~~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~C 370 (387)
.. + .|+|.+|++++|..++. ....+..+.. |++|.++.|-.+.--.. ....|+|.+||+.||
T Consensus 305 ~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~--L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 305 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY--LQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHHHhCCceeeeccccccccCchHHHHHHhcch--heeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 00 0 15666666666655543 2233444555 66666666643321100 023456666666654
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=2.2e-07 Score=83.98 Aligned_cols=173 Identities=17% Similarity=0.167 Sum_probs=105.2
Q ss_pred CCCCcEEEEcCcCCCCCCC--ccCCccCCCccEEEeecCCCCCCCCC----cCCcCCCcEEEecCCCCceEeCccccCCC
Q 043667 5 HKNLEQFCISGYRGAKFPT--WFGDSSFSNLVTLKFEYCGMCPTLPS----VGQLPSLKHLAVCGMTSVKRLGSEFYGKG 78 (387)
Q Consensus 5 ~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~l~~c~~~~~l~~----~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 78 (387)
.++||.+.+.+++....+. .... |++++.|+++.+ -+....+ +..||+|+.|+++.+ .+.....+..
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~--~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~--- 192 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKI--LPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNT--- 192 (505)
T ss_pred HHhhhheeecCccccccchhhhhhh--CCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccc-cccCCccccc---
Confidence 4578888888887766553 3333 888889888874 2222222 456888888888877 3333222211
Q ss_pred cccCCCCcceeeccccCCc-cccccCcCCCCccCCCCcceEeeccCc-ccccccCC-CCCCccEEEeccCcccc----cc
Q 043667 79 AAIPFPRLETLRFDAMLGW-EDWIPLRSGQGVEGFPKLRELHILRCS-KLQGTFPE-HLPALEMLVIEACKELS----VS 151 (387)
Q Consensus 79 ~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~i~~~~~L~~L~l~~~~-~l~~~~~~-~~~~L~~L~l~~~~~l~----~~ 151 (387)
...+++|+.|.+..|.-- .+.. .-+..||+|+.|++..+. .+....+. .+..|+.|++++...+. ..
T Consensus 193 -~~~l~~lK~L~l~~CGls~k~V~-----~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~ 266 (505)
T KOG3207|consen 193 -TLLLSHLKQLVLNSCGLSWKDVQ-----WILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYK 266 (505)
T ss_pred -hhhhhhhheEEeccCCCCHHHHH-----HHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccc
Confidence 235788888888877532 1111 111258888888887763 22222232 25678888888876554 33
Q ss_pred ccCCCCcceEEEcCcccee--Eecc-----cccCCCCcEEeccCCC
Q 043667 152 VSSLPALCKLKIGGCKKVV--WRSA-----TDHLGSQNSVVCRDTS 190 (387)
Q Consensus 152 ~~~~~~L~~L~i~~~~~~~--~~~~-----~~~~~~L~~L~l~~~~ 190 (387)
.+.+|.|+.|++..+.-.. .++. ...+++|+.|.+...+
T Consensus 267 ~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 5667788888777654333 2222 3457888888887654
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.13 E-value=8.5e-07 Score=76.55 Aligned_cols=36 Identities=14% Similarity=0.079 Sum_probs=16.7
Q ss_pred ccCCCCcceEEEcCccceeEecccccCCCCcEEeccC
Q 043667 152 VSSLPALCKLKIGGCKKVVWRSATDHLGSQNSVVCRD 188 (387)
Q Consensus 152 ~~~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~ 188 (387)
..-.|.++.|+++.+...++.+ +..+++|+.|++++
T Consensus 303 vKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~ 338 (490)
T KOG1259|consen 303 VKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSG 338 (490)
T ss_pred hhhccceeEEeccccceeeehh-hhhcccceEeeccc
Confidence 3334555555555443333222 44455555555554
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.06 E-value=2.2e-06 Score=74.02 Aligned_cols=126 Identities=13% Similarity=0.163 Sum_probs=67.1
Q ss_pred CCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcC
Q 043667 231 CSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALP 310 (387)
Q Consensus 231 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 310 (387)
..|+++++++ +.+..+.+ +.+-+ |+++.|+++++ .+..+.. ++.+++|+.||+++ +.+..+. ++.
T Consensus 284 q~LtelDLS~-N~I~~iDE-----SvKL~----Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~--Gwh 348 (490)
T KOG1259|consen 284 QELTELDLSG-NLITQIDE-----SVKLA----PKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSG-NLLAECV--GWH 348 (490)
T ss_pred hhhhhccccc-cchhhhhh-----hhhhc----cceeEEecccc-ceeeehh-hhhcccceEeeccc-chhHhhh--hhH
Confidence 4466666665 33443332 22222 66777776653 3444432 55666667777766 3443332 222
Q ss_pred ---CCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCC---CCCCCccEEeecCCccccccc
Q 043667 311 ---SKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGV---QLPPSLKRLDIWNCDNIRTLT 377 (387)
Q Consensus 311 ---~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~C~~l~~l~ 377 (387)
-+.++|.+++ +.++++. ++...-+ |..||+++ +++..+... +.+|.|+.+.+.+.| ++.+|
T Consensus 349 ~KLGNIKtL~La~-N~iE~LS-GL~KLYS--LvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQ-NKIETLS-GLRKLYS--LVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred hhhcCEeeeehhh-hhHhhhh-hhHhhhh--heeccccc-cchhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence 4566666665 3455553 2333444 77777777 455443322 566777777777744 44444
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=1.2e-06 Score=79.38 Aligned_cols=89 Identities=16% Similarity=0.195 Sum_probs=43.0
Q ss_pred ccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcc--cccCCCCCccEEEecCCCCceecC
Q 043667 228 QDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLP--QSSLSLSSLREIDIYDCSSLVSFP 305 (387)
Q Consensus 228 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~~L~~L~l~~c~~l~~~~ 305 (387)
..+|+|+.|.++++..+..... .... +..|++|+|++++ +-+++ ...+.++.|+.|+++.| .+.++.
T Consensus 219 ~~fPsl~~L~L~~N~~~~~~~~-----~~~i----~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~t-gi~si~ 287 (505)
T KOG3207|consen 219 LTFPSLEVLYLEANEIILIKAT-----STKI----LQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSST-GIASIA 287 (505)
T ss_pred HhCCcHHHhhhhcccccceecc-----hhhh----hhHHhhccccCCc-ccccccccccccccchhhhhcccc-Ccchhc
Confidence 3466777777766432211100 1111 2566777776644 33333 23456666666666653 343332
Q ss_pred --CC------CcCCCceEEEeccCCCCCccc
Q 043667 306 --EV------ALPSKLKKIEIRKCDALKSLP 328 (387)
Q Consensus 306 --~~------~~~~~L~~L~l~~c~~l~~l~ 328 (387)
.. ...++|+.|++.. +++.+++
T Consensus 288 ~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~ 317 (505)
T KOG3207|consen 288 EPDVESLDKTHTFPKLEYLNISE-NNIRDWR 317 (505)
T ss_pred CCCccchhhhcccccceeeeccc-Ccccccc
Confidence 11 1126677777765 3344443
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.01 E-value=6.6e-06 Score=55.00 Aligned_cols=56 Identities=27% Similarity=0.441 Sum_probs=31.8
Q ss_pred CCCcEEEEcCcCCCCCCC-ccCCccCCCccEEEeecCCCCCCCCC--cCCcCCCcEEEecCC
Q 043667 6 KNLEQFCISGYRGAKFPT-WFGDSSFSNLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGM 64 (387)
Q Consensus 6 ~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~c~~~~~l~~--~~~l~~L~~L~l~~~ 64 (387)
++|++|+++++....+|. ++.. +++|++|++++| .++.+++ +..+++|++|+++++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~--l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSN--LPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTT--GTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcC--CCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 356666666666655543 3443 666666666653 4555553 555666666666655
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.00 E-value=8.3e-06 Score=66.76 Aligned_cols=124 Identities=20% Similarity=0.226 Sum_probs=44.1
Q ss_pred cCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCC
Q 043667 229 DICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVA 308 (387)
Q Consensus 229 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 308 (387)
+...+++|++.++ .+..+.. +.. .+.+|+.|++++| .++.+. ++..+++|+.|++++ +.++++....
T Consensus 17 n~~~~~~L~L~~n-~I~~Ie~------L~~---~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l 83 (175)
T PF14580_consen 17 NPVKLRELNLRGN-QISTIEN------LGA---TLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSN-NRISSISEGL 83 (175)
T ss_dssp --------------------S--------T---T-TT--EEE-TTS---S--T-T----TT--EEE--S-S---S-CHHH
T ss_pred ccccccccccccc-ccccccc------hhh---hhcCCCEEECCCC-CCcccc-CccChhhhhhcccCC-CCCCccccch
Confidence 4567899999984 4554421 221 1278999999985 577775 577889999999998 7888876421
Q ss_pred --cCCCceEEEeccCCCCCcccc--ccccCCCCCcceEecccCcccccccCC-----CCCCCccEEeecC
Q 043667 309 --LPSKLKKIEIRKCDALKSLPE--AWMCDTNSSLETLKIERCRSLTYIAGV-----QLPPSLKRLDIWN 369 (387)
Q Consensus 309 --~~~~L~~L~l~~c~~l~~l~~--~~~~~~~~~L~~L~l~~c~~l~~~~~~-----~~~~~L~~L~l~~ 369 (387)
..|+|++|.+++ +.+.++.+ .+..+++ |+.|++.++| +++-+.. ...|+|+.||-..
T Consensus 84 ~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~--L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 84 DKNLPNLQELYLSN-NKISDLNELEPLSSLPK--LRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HHH-TT--EEE-TT-S---SCCCCGGGGG-TT----EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred HHhCCcCCEEECcC-CcCCChHHhHHHHcCCC--cceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence 238999999987 55766543 3444566 9999999964 4433221 2357788887543
No 38
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.95 E-value=7.9e-07 Score=86.15 Aligned_cols=233 Identities=21% Similarity=0.240 Sum_probs=109.7
Q ss_pred CCCccEEEeccCcccc-----ccccCCCCcceEEEcCc-ccee-----EecccccCCCCcEEeccCCCCcccccCCC-CC
Q 043667 134 LPALEMLVIEACKELS-----VSVSSLPALCKLKIGGC-KKVV-----WRSATDHLGSQNSVVCRDTSNQVFLAGPL-KP 201 (387)
Q Consensus 134 ~~~L~~L~l~~~~~l~-----~~~~~~~~L~~L~i~~~-~~~~-----~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~ 201 (387)
++.|+.+.+.+|..+. .....+++|+.|++.++ .... .......+++|+.+++..+..+.+..... ..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 5666666666665443 23445667777776652 2111 11122334666666666665433222111 22
Q ss_pred CCccccceeEEEcCCCCcccccc-cccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCC---CC
Q 043667 202 QLPKLEELILSTKEQTYIWKSHD-GLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCK---GL 277 (387)
Q Consensus 202 ~l~~L~~l~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~---~l 277 (387)
.+++|++ +.+..|..++.... .+...+++|++|++++|..+.+.. +..+...+++++.|.+..+. .+
T Consensus 267 ~c~~L~~--L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~-------l~~~~~~c~~l~~l~~~~~~~c~~l 337 (482)
T KOG1947|consen 267 RCPNLET--LSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSG-------LEALLKNCPNLRELKLLSLNGCPSL 337 (482)
T ss_pred hCCCcce--EccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHH-------HHHHHHhCcchhhhhhhhcCCCccH
Confidence 3556666 66555554332111 122346667777776666653221 11111123555554443333 22
Q ss_pred CCcc--cccCCC-CCccEEEecCCCCceecCCCCcC-CCce-EEEeccCCCC-CccccccccCCCCCcceEecccCcccc
Q 043667 278 VKLP--QSSLSL-SSLREIDIYDCSSLVSFPEVALP-SKLK-KIEIRKCDAL-KSLPEAWMCDTNSSLETLKIERCRSLT 351 (387)
Q Consensus 278 ~~~~--~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~-~~L~-~L~l~~c~~l-~~l~~~~~~~~~~~L~~L~l~~c~~l~ 351 (387)
+... ...... ..+..+.+.+|++++.+...... .... .+.+.+|+.+ ..+......... ++.|++..|...+
T Consensus 338 ~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~--l~~L~l~~~~~~t 415 (482)
T KOG1947|consen 338 TDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDS--LRVLNLSDCRLVT 415 (482)
T ss_pred HHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCc--cceEecccCcccc
Confidence 2211 001111 13444444555444443322111 1112 4555666666 333322222333 7888888887666
Q ss_pred cccCC--CC-CCCccEEeecCCccccccc
Q 043667 352 YIAGV--QL-PPSLKRLDIWNCDNIRTLT 377 (387)
Q Consensus 352 ~~~~~--~~-~~~L~~L~l~~C~~l~~l~ 377 (387)
.-... .. ..+++.+++.+|+.++.-.
T Consensus 416 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 416 DKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred ccchHHHhhhhhccccCCccCcccccchh
Confidence 54333 11 4567778888877766554
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.94 E-value=1.9e-05 Score=52.74 Aligned_cols=54 Identities=28% Similarity=0.468 Sum_probs=21.5
Q ss_pred CccEEEeccCCCCCCccc-ccCCCCCccEEEecCCCCceecCCCCcC--CCceEEEecc
Q 043667 265 RLEYLRLRYCKGLVKLPQ-SSLSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRK 320 (387)
Q Consensus 265 ~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~ 320 (387)
+|++|++++| +++.++. .+..+++|+.|++++ +.++.++...+. ++|++|++++
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcC
Confidence 3444444443 3333332 233444444444443 334444433322 4444444443
No 40
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.90 E-value=8.8e-07 Score=85.82 Aligned_cols=210 Identities=21% Similarity=0.269 Sum_probs=102.7
Q ss_pred CCCCcceEEEcCcccee---EecccccCCCCcEEeccCC-CCccccc---CCCCCCCccccceeEEEcCCCCcccccccc
Q 043667 154 SLPALCKLKIGGCKKVV---WRSATDHLGSQNSVVCRDT-SNQVFLA---GPLKPQLPKLEELILSTKEQTYIWKSHDGL 226 (387)
Q Consensus 154 ~~~~L~~L~i~~~~~~~---~~~~~~~~~~L~~L~l~~~-~~l~~~~---~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~ 226 (387)
.++.|+.+.+.++..+. ........++|++|++++| ......+ ......+++|++ +.+..+..++......
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~--l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKS--LDLSGCGLVTDIGLSA 263 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCc--cchhhhhccCchhHHH
Confidence 45677777777665555 2234455677777777663 2211111 001333455666 6666665554333222
Q ss_pred cc-cCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCC--cccccCCCCCccEEEecCC---CC
Q 043667 227 LQ-DICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK--LPQSSLSLSSLREIDIYDC---SS 300 (387)
Q Consensus 227 l~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~~L~~L~l~~c---~~ 300 (387)
++ .+++|++|.+.+|..+.+. ++..+...++.|++|++++|..+++ +......+++++.+.+..+ ..
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~-------gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~ 336 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDE-------GLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPS 336 (482)
T ss_pred HHhhCCCcceEccCCCCccchh-------HHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCcc
Confidence 22 3667777776666653332 2333333446777777777766543 2222334565555444333 33
Q ss_pred ceecCCCCcC---C-CceEEEeccCCCCCccccccccCCCCCcc-eEecccCcccc-cccCC-CCCCCccEEeecCCccc
Q 043667 301 LVSFPEVALP---S-KLKKIEIRKCDALKSLPEAWMCDTNSSLE-TLKIERCRSLT-YIAGV-QLPPSLKRLDIWNCDNI 373 (387)
Q Consensus 301 l~~~~~~~~~---~-~L~~L~l~~c~~l~~l~~~~~~~~~~~L~-~L~l~~c~~l~-~~~~~-~~~~~L~~L~l~~C~~l 373 (387)
++.+...... . .+..+.+.+|++++++.-....... .. .+.+.+|+.++ .+..- ....+++.|+++.|...
T Consensus 337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~--~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~ 414 (482)
T KOG1947|consen 337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISD--LGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLV 414 (482)
T ss_pred HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccC--cchHHHhcCCcccchHHHHHhccCCccceEecccCccc
Confidence 4433322211 1 4566666666666554422111111 22 45566666662 22211 12223667777766654
Q ss_pred c
Q 043667 374 R 374 (387)
Q Consensus 374 ~ 374 (387)
+
T Consensus 415 t 415 (482)
T KOG1947|consen 415 T 415 (482)
T ss_pred c
Confidence 3
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.65 E-value=2.6e-06 Score=75.06 Aligned_cols=198 Identities=18% Similarity=0.164 Sum_probs=100.0
Q ss_pred ccccCCCCcceEEEcCcccee-----EecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccc
Q 043667 150 VSVSSLPALCKLKIGGCKKVV-----WRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHD 224 (387)
Q Consensus 150 ~~~~~~~~L~~L~i~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~ 224 (387)
..+..+|+|++++++++..-. +-..+.++.+|++|.+.+|.--..-..... ..|.+ ++..
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~---~al~~--l~~~---------- 150 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG---RALFE--LAVN---------- 150 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH---HHHHH--HHHH----------
Confidence 355667788888888753221 223455677888888887642111100000 01111 1100
Q ss_pred cccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCC----CCCCcccccCCCCCccEEEecCCCC
Q 043667 225 GLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCK----GLVKLPQSSLSLSSLREIDIYDCSS 300 (387)
Q Consensus 225 ~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~----~l~~~~~~~~~~~~L~~L~l~~c~~ 300 (387)
...++-+.|+++..+. +++.+.+.......++.. +.|+.+.+..+. .++.+...+..+++|+.|++.+ +-
T Consensus 151 kk~~~~~~Lrv~i~~r-Nrlen~ga~~~A~~~~~~----~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D-Nt 224 (382)
T KOG1909|consen 151 KKAASKPKLRVFICGR-NRLENGGATALAEAFQSH----PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD-NT 224 (382)
T ss_pred hccCCCcceEEEEeec-cccccccHHHHHHHHHhc----cccceEEEecccccCchhHHHHHHHHhCCcceeeeccc-ch
Confidence 0023446677777766 455555444333344444 777777776532 1122333456777788888776 33
Q ss_pred ceecCCC------CcCCCceEEEeccCCCCCc-----cccccccCCCCCcceEecccCcccccccC-----C-CCCCCcc
Q 043667 301 LVSFPEV------ALPSKLKKIEIRKCDALKS-----LPEAWMCDTNSSLETLKIERCRSLTYIAG-----V-QLPPSLK 363 (387)
Q Consensus 301 l~~~~~~------~~~~~L~~L~l~~c~~l~~-----l~~~~~~~~~~~L~~L~l~~c~~l~~~~~-----~-~~~~~L~ 363 (387)
++.-... ...+.|++|++++|. ++. +...+.. ..|.|+.+.+.+| .++.=.. . ..-|.|+
T Consensus 225 ft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~-~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~ 301 (382)
T KOG1909|consen 225 FTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKE-SAPSLEVLELAGN-EITRDAALALAACMAEKPDLE 301 (382)
T ss_pred hhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhc-cCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhH
Confidence 3322111 112567777777775 322 1111111 1244888887775 4442110 0 2356777
Q ss_pred EEeecCCc
Q 043667 364 RLDIWNCD 371 (387)
Q Consensus 364 ~L~l~~C~ 371 (387)
+|++++|.
T Consensus 302 kLnLngN~ 309 (382)
T KOG1909|consen 302 KLNLNGNR 309 (382)
T ss_pred HhcCCccc
Confidence 88887754
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.60 E-value=2.5e-06 Score=79.80 Aligned_cols=143 Identities=19% Similarity=0.278 Sum_probs=100.9
Q ss_pred cccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCC
Q 043667 219 IWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDC 298 (387)
Q Consensus 219 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c 298 (387)
+..+|.. ...+..|+.++++. +.+...+.. +.. --|+.|-+++ ++++.+|+.++..+.|..|+++.
T Consensus 110 ~r~ip~~-i~~L~~lt~l~ls~-NqlS~lp~~-----lC~-----lpLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~- 175 (722)
T KOG0532|consen 110 IRTIPEA-ICNLEALTFLDLSS-NQLSHLPDG-----LCD-----LPLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSK- 175 (722)
T ss_pred ceecchh-hhhhhHHHHhhhcc-chhhcCChh-----hhc-----CcceeEEEec-CccccCCcccccchhHHHhhhhh-
Confidence 3344544 45677788888876 455555543 221 4677777776 66888888888888888899887
Q ss_pred CCceecCCC-CcCCCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCC-CCCCCccEEeecCCcccccc
Q 043667 299 SSLVSFPEV-ALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGV-QLPPSLKRLDIWNCDNIRTL 376 (387)
Q Consensus 299 ~~l~~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~C~~l~~l 376 (387)
+++..++.. +-..+|+.+.+.. +.+.++|..+..++ |.+||+++ +++..+|.. ..+..|++|.+.+ +-|++=
T Consensus 176 nei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~Lp---Li~lDfSc-Nkis~iPv~fr~m~~Lq~l~Len-NPLqSP 249 (722)
T KOG0532|consen 176 NEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSLP---LIRLDFSC-NKISYLPVDFRKMRHLQVLQLEN-NPLQSP 249 (722)
T ss_pred hhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCCc---eeeeeccc-Cceeecchhhhhhhhheeeeecc-CCCCCC
Confidence 466666532 2227888888876 55888887765333 88999976 789999987 6678889998886 558888
Q ss_pred ccccc
Q 043667 377 TVEEG 381 (387)
Q Consensus 377 ~~~~~ 381 (387)
|+.++
T Consensus 250 PAqIC 254 (722)
T KOG0532|consen 250 PAQIC 254 (722)
T ss_pred hHHHH
Confidence 87763
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.58 E-value=7.1e-05 Score=46.00 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=15.8
Q ss_pred CccEEEeecCCCCCCCCC-cCCcCCCcEEEecCC
Q 043667 32 NLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGM 64 (387)
Q Consensus 32 ~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~ 64 (387)
+|++|+++++ .++++|. +++|++|+.|+++++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence 4555555553 4445554 555555555555555
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.49 E-value=0.00013 Score=68.91 Aligned_cols=101 Identities=26% Similarity=0.361 Sum_probs=42.4
Q ss_pred CCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcceEe
Q 043667 264 CRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLK 343 (387)
Q Consensus 264 ~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~ 343 (387)
++|+.|++++ ..+..+|..+.....|+++.+++...+..........++..+.+.+ +.+..++..+..... ++.|+
T Consensus 186 ~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~--l~~L~ 261 (394)
T COG4886 186 SNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSN--LETLD 261 (394)
T ss_pred hhhhheeccC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccchhccccc--cceec
Confidence 4555555554 2344454433333335555555422222222111123344443322 223333333333444 55555
Q ss_pred cccCcccccccCCCCCCCccEEeecC
Q 043667 344 IERCRSLTYIAGVQLPPSLKRLDIWN 369 (387)
Q Consensus 344 l~~c~~l~~~~~~~~~~~L~~L~l~~ 369 (387)
+++ +.+++++..+...+++.|++++
T Consensus 262 ~s~-n~i~~i~~~~~~~~l~~L~~s~ 286 (394)
T COG4886 262 LSN-NQISSISSLGSLTNLRELDLSG 286 (394)
T ss_pred ccc-ccccccccccccCccCEEeccC
Confidence 555 2455554433445555555555
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.47 E-value=0.00013 Score=44.85 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=33.6
Q ss_pred CCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCc
Q 043667 6 KNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSV 50 (387)
Q Consensus 6 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~ 50 (387)
++|++|+++++.+..+|..++. +++|++|++++| .+++++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~--l~~L~~L~l~~N-~i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSN--LPNLETLNLSNN-PISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTT--CTTSSEEEETSS-CCSBEGGG
T ss_pred CcceEEEccCCCCcccCchHhC--CCCCCEEEecCC-CCCCCcCC
Confidence 5799999999999999887776 999999999997 66666554
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.44 E-value=0.00012 Score=69.02 Aligned_cols=55 Identities=25% Similarity=0.358 Sum_probs=24.2
Q ss_pred CCcEEEEcCcCCCCCCCccCCccCC-CccEEEeecCCCCCCCC-CcCCcCCCcEEEecCC
Q 043667 7 NLEQFCISGYRGAKFPTWFGDSSFS-NLVTLKFEYCGMCPTLP-SVGQLPSLKHLAVCGM 64 (387)
Q Consensus 7 ~L~~L~l~~~~~~~~p~~~~~~~l~-~L~~L~l~~c~~~~~l~-~~~~l~~L~~L~l~~~ 64 (387)
+++.+.+.++.+..+|...+. +. +|+.|+++++ .+..+| .++.+++|+.|++.++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~--~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGL--LKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred ceeEEecCCcccccCcccccc--chhhccccccccc-chhhhhhhhhccccccccccCCc
Confidence 344444444444444444432 32 4444444442 444443 3444444444444444
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.36 E-value=2.2e-05 Score=69.41 Aligned_cols=15 Identities=13% Similarity=0.188 Sum_probs=7.6
Q ss_pred cCCcCCCcEEEecCC
Q 043667 50 VGQLPSLKHLAVCGM 64 (387)
Q Consensus 50 ~~~l~~L~~L~l~~~ 64 (387)
++++..|++|.+.+|
T Consensus 116 l~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 116 LSSCTDLEELYLNNC 130 (382)
T ss_pred HHhccCHHHHhhhcC
Confidence 344555555555555
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.34 E-value=5.9e-05 Score=75.23 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=63.9
Q ss_pred CCCcEEEEcCcCCC--CCCCccCCccCCCccEEEeecCCCCC-CCCC-cCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667 6 KNLEQFCISGYRGA--KFPTWFGDSSFSNLVTLKFEYCGMCP-TLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI 81 (387)
Q Consensus 6 ~~L~~L~l~~~~~~--~~p~~~~~~~l~~L~~L~l~~c~~~~-~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 81 (387)
.+||+|+++|.... ..|..++. .||+|++|.+.+-.... ++.. ..++|||+.||++++ +++.+.. ..
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~-~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~G-------IS 192 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGT-MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLSG-------IS 192 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhh-hCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcHH-------Hh
Confidence 47888888874432 12333443 58888888887732211 1111 567888888888888 6665521 24
Q ss_pred CCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcc
Q 043667 82 PFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSK 125 (387)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~ 125 (387)
.+++|+.|.+.++.-...... ..+-.+.+|+.|+++....
T Consensus 193 ~LknLq~L~mrnLe~e~~~~l----~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQDL----IDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred ccccHHHHhccCCCCCchhhH----HHHhcccCCCeeecccccc
Confidence 577777777776543322211 2223577888888876544
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.28 E-value=0.00016 Score=72.28 Aligned_cols=105 Identities=17% Similarity=0.184 Sum_probs=54.2
Q ss_pred ccccceeEEEcCCCCcc-cccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCccc
Q 043667 204 PKLEELILSTKEQTYIW-KSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ 282 (387)
Q Consensus 204 ~~L~~l~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~ 282 (387)
.+|++ +++.+...+. .++..+..-+|+|++|.+.+-.... + .|..+...||+|..|+|+++ +++.+ .
T Consensus 122 ~nL~~--LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~----~----dF~~lc~sFpNL~sLDIS~T-nI~nl-~ 189 (699)
T KOG3665|consen 122 QNLQH--LDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN----D----DFSQLCASFPNLRSLDISGT-NISNL-S 189 (699)
T ss_pred Hhhhh--cCccccchhhccHHHHHhhhCcccceEEecCceecc----h----hHHHHhhccCccceeecCCC-CccCc-H
Confidence 45555 6665543332 2222222347777777777632211 1 13333334477777777774 35555 4
Q ss_pred ccCCCCCccEEEecCCCCceecC-CC-Cc-CCCceEEEeccC
Q 043667 283 SSLSLSSLREIDIYDCSSLVSFP-EV-AL-PSKLKKIEIRKC 321 (387)
Q Consensus 283 ~~~~~~~L~~L~l~~c~~l~~~~-~~-~~-~~~L~~L~l~~c 321 (387)
+++++++|+.|.+.+.. +.... .. -+ ..+|++|||+.-
T Consensus 190 GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HHhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeecccc
Confidence 56677777777765532 22111 00 11 167777777753
No 50
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.03 E-value=6.8e-05 Score=70.50 Aligned_cols=187 Identities=21% Similarity=0.230 Sum_probs=119.6
Q ss_pred EEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCcccccccccccCCCccEEEecC
Q 043667 161 LKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDW 240 (387)
Q Consensus 161 L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 240 (387)
.+++.+..-+++..+..|..|+.+.+..+. ...++.. ...+..|.. +.++.. .+..+|..+ -.+ -|+.|.+++
T Consensus 80 aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~-i~~L~~lt~--l~ls~N-qlS~lp~~l-C~l-pLkvli~sN 152 (722)
T KOG0532|consen 80 ADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEA-ICNLEALTF--LDLSSN-QLSHLPDGL-CDL-PLKVLIVSN 152 (722)
T ss_pred hhccccccccCchHHHHHHHHHHHHHHhcc-ceecchh-hhhhhHHHH--hhhccc-hhhcCChhh-hcC-cceeEEEec
Confidence 344444444455555556666666665421 2222222 234445444 555543 344555542 223 488888887
Q ss_pred CCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEecc
Q 043667 241 CPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRK 320 (387)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~ 320 (387)
++++.+|++ ++-. +.|..|+.+.| .+..+|..+..+.+|+.|.++. +.+.++|.....-.|..||++
T Consensus 153 -Nkl~~lp~~-----ig~~----~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~LpLi~lDfS- 219 (722)
T KOG0532|consen 153 -NKLTSLPEE-----IGLL----PTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSLPLIRLDFS- 219 (722)
T ss_pred -CccccCCcc-----cccc----hhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCCceeeeecc-
Confidence 677777765 3333 78888998875 4777888888899999999987 567777755444568899986
Q ss_pred CCCCCccccccccCCCCCcceEecccCcccccccCC----CCCCCccEEeecCC
Q 043667 321 CDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGV----QLPPSLKRLDIWNC 370 (387)
Q Consensus 321 c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~----~~~~~L~~L~l~~C 370 (387)
|+++..+|..+..+.. |++|.+.+. -++.-|.. +..-=-++|++.-|
T Consensus 220 cNkis~iPv~fr~m~~--Lq~l~LenN-PLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 220 CNKISYLPVDFRKMRH--LQVLQLENN-PLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cCceeecchhhhhhhh--heeeeeccC-CCCCChHHHHhccceeeeeeecchhc
Confidence 6889999988877888 999999874 56554433 22122377777777
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.02 E-value=9e-06 Score=78.35 Aligned_cols=76 Identities=24% Similarity=0.323 Sum_probs=39.8
Q ss_pred CCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcC-CCceEEEeccCCCCCccccccccCCCCCcceE
Q 043667 264 CRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALP-SKLKKIEIRKCDALKSLPEAWMCDTNSSLETL 342 (387)
Q Consensus 264 ~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L 342 (387)
+.++.|++++ ++++++. .+..++.|+.||+++ +.++.+|.-+.- ..|..|.+.+ +-++++- ++..+.+ |+.|
T Consensus 187 ~ale~LnLsh-Nk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~-gie~Lks--L~~L 259 (1096)
T KOG1859|consen 187 PALESLNLSH-NKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRN-NALTTLR-GIENLKS--LYGL 259 (1096)
T ss_pred HHhhhhccch-hhhhhhH-HHHhccccccccccc-chhccccccchhhhhheeeeecc-cHHHhhh-hHHhhhh--hhcc
Confidence 5666666665 3344444 344566666666665 455555533222 4466666655 3344442 2333455 6666
Q ss_pred eccc
Q 043667 343 KIER 346 (387)
Q Consensus 343 ~l~~ 346 (387)
|+++
T Consensus 260 Dlsy 263 (1096)
T KOG1859|consen 260 DLSY 263 (1096)
T ss_pred chhH
Confidence 6666
No 52
>PLN03150 hypothetical protein; Provisional
Probab=96.95 E-value=0.0022 Score=64.12 Aligned_cols=108 Identities=14% Similarity=0.103 Sum_probs=67.5
Q ss_pred ccEEEeccCCCCCCcccccCCCCCccEEEecCCCCce-ecCCC-CcCCCceEEEeccCCCCCccccccccCCCCCcceEe
Q 043667 266 LEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLV-SFPEV-ALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLK 343 (387)
Q Consensus 266 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~ 343 (387)
++.|++.++.--..+|..+..+++|+.|+++++ .+. .+|.. +..++|+.|+++++..-..+|..+..+.+ |+.|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~--L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS--LRILN 496 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCC--CCEEE
Confidence 667777765433356667777888888888874 443 44422 22378888888876544567777766777 88888
Q ss_pred cccCcccccccCC--CCCCCccEEeecCCcccccc
Q 043667 344 IERCRSLTYIAGV--QLPPSLKRLDIWNCDNIRTL 376 (387)
Q Consensus 344 l~~c~~l~~~~~~--~~~~~L~~L~l~~C~~l~~l 376 (387)
++++.--..+|.. ....++..+++.+++.+-..
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCccccCC
Confidence 8886433345543 22345567777765544433
No 53
>PLN03150 hypothetical protein; Provisional
Probab=96.73 E-value=0.004 Score=62.23 Aligned_cols=105 Identities=17% Similarity=0.104 Sum_probs=53.2
Q ss_pred ccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCC-CcCC
Q 043667 233 LKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEV-ALPS 311 (387)
Q Consensus 233 L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~ 311 (387)
++.|+++++.--..++. .+..+ ++|+.|+++++.--..+|..+..+++|+.|+++++.--..+|.. +..+
T Consensus 420 v~~L~L~~n~L~g~ip~-----~i~~L----~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~ 490 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPN-----DISKL----RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490 (623)
T ss_pred EEEEECCCCCccccCCH-----HHhCC----CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence 55666665433233333 24444 66666666664432355655666666777776664222233321 1225
Q ss_pred CceEEEeccCCCCCccccccccC-CCCCcceEecccCc
Q 043667 312 KLKKIEIRKCDALKSLPEAWMCD-TNSSLETLKIERCR 348 (387)
Q Consensus 312 ~L~~L~l~~c~~l~~l~~~~~~~-~~~~L~~L~l~~c~ 348 (387)
+|+.|+++++..-..+|..+... .. +..+++.+++
T Consensus 491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~--~~~l~~~~N~ 526 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPAALGGRLLH--RASFNFTDNA 526 (623)
T ss_pred CCCEEECcCCcccccCChHHhhcccc--CceEEecCCc
Confidence 66677666655334555443221 22 4555555543
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.63 E-value=0.0068 Score=49.97 Aligned_cols=81 Identities=20% Similarity=0.292 Sum_probs=53.1
Q ss_pred CCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCCcceeeccccC--CccccccCcCCC
Q 043667 30 FSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRLETLRFDAML--GWEDWIPLRSGQ 107 (387)
Q Consensus 30 l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~~ 107 (387)
.-+...+|++++ .+..++.+..+++|..|.+.++ .+..|.... ...+|+|+.|.+.+.. .+.+. +
T Consensus 41 ~d~~d~iDLtdN-dl~~l~~lp~l~rL~tLll~nN-rIt~I~p~L-----~~~~p~l~~L~LtnNsi~~l~dl------~ 107 (233)
T KOG1644|consen 41 LDQFDAIDLTDN-DLRKLDNLPHLPRLHTLLLNNN-RITRIDPDL-----DTFLPNLKTLILTNNSIQELGDL------D 107 (233)
T ss_pred ccccceeccccc-chhhcccCCCccccceEEecCC-cceeeccch-----hhhccccceEEecCcchhhhhhc------c
Confidence 446788888884 7778888888999999999888 777776653 2346777777777522 12222 2
Q ss_pred CccCCCCcceEeeccC
Q 043667 108 GVEGFPKLRELHILRC 123 (387)
Q Consensus 108 ~i~~~~~L~~L~l~~~ 123 (387)
....+|.|+.|.+-++
T Consensus 108 pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 108 PLASCPKLEYLTLLGN 123 (233)
T ss_pred hhccCCccceeeecCC
Confidence 2234566666666544
No 55
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.56 E-value=0.00057 Score=64.89 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=48.4
Q ss_pred CCCCCCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCccc
Q 043667 2 LEPHKNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAI 81 (387)
Q Consensus 2 ~~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 81 (387)
+..+.+|+.+++.++.+.++...+.. +++|++|++++ +.++.+..+..++.|+.|.+.++ .+..+..- .
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~--~~~L~~L~ls~-N~I~~i~~l~~l~~L~~L~l~~N-~i~~~~~~-------~ 159 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSS--LVNLQVLDLSF-NKITKLEGLSTLTLLKELNLSGN-LISDISGL-------E 159 (414)
T ss_pred cccccceeeeeccccchhhcccchhh--hhcchheeccc-cccccccchhhccchhhheeccC-cchhccCC-------c
Confidence 34556667777776666665543333 66777777776 36666666666777777777766 44444321 2
Q ss_pred CCCCcceeeccc
Q 043667 82 PFPRLETLRFDA 93 (387)
Q Consensus 82 ~~~~L~~L~l~~ 93 (387)
.++.|+.+++++
T Consensus 160 ~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 160 SLKSLKLLDLSY 171 (414)
T ss_pred cchhhhcccCCc
Confidence 245555555554
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.0015 Score=56.92 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=24.6
Q ss_pred CCCccEEEeccCc-----cccccccCCCCcceEEEcCccceeEeccc-ccCCCCcEEeccC
Q 043667 134 LPALEMLVIEACK-----ELSVSVSSLPALCKLKIGGCKKVVWRSAT-DHLGSQNSVVCRD 188 (387)
Q Consensus 134 ~~~L~~L~l~~~~-----~l~~~~~~~~~L~~L~i~~~~~~~~~~~~-~~~~~L~~L~l~~ 188 (387)
++.++.+++.+.. .+...+.++|.|+.|+++.+......... -...+|+.|.+.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg 130 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG 130 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC
Confidence 4455555554432 22234455566666666554333322111 1233555555554
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.03 E-value=0.0018 Score=56.48 Aligned_cols=226 Identities=16% Similarity=0.179 Sum_probs=109.4
Q ss_pred CCcCCCcEEEecCCCCceEeCc-cccCCCcccCCCCcceeeccccCCccccccCcCCCCccCCCCcceEeeccCcccc--
Q 043667 51 GQLPSLKHLAVCGMTSVKRLGS-EFYGKGAAIPFPRLETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRCSKLQ-- 127 (387)
Q Consensus 51 ~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~~~l~-- 127 (387)
+...-++.|.+.+| .+...+. ..+ ......++++++.+ ..+.+|...+ .-.+.+|.|+.|+++.+ .+.
T Consensus 42 ~s~ra~ellvln~~-~id~~gd~~~~----~~~~~~v~elDL~~-N~iSdWseI~--~ile~lP~l~~LNls~N-~L~s~ 112 (418)
T KOG2982|consen 42 SSLRALELLVLNGS-IIDNEGDVMLF----GSSVTDVKELDLTG-NLISDWSEIG--AILEQLPALTTLNLSCN-SLSSD 112 (418)
T ss_pred ccccchhhheecCC-CCCcchhHHHH----HHHhhhhhhhhccc-chhccHHHHH--HHHhcCccceEeeccCC-cCCCc
Confidence 33445556666666 3333221 111 12457778888876 4566663200 11127899999999765 333
Q ss_pred -cccCCCCCCccEEEeccCc----cccccccCCCCcceEEEcCccceeE---ecccc-cCCCCcEEeccCCCCcccccCC
Q 043667 128 -GTFPEHLPALEMLVIEACK----ELSVSVSSLPALCKLKIGGCKKVVW---RSATD-HLGSQNSVVCRDTSNQVFLAGP 198 (387)
Q Consensus 128 -~~~~~~~~~L~~L~l~~~~----~l~~~~~~~~~L~~L~i~~~~~~~~---~~~~~-~~~~L~~L~l~~~~~l~~~~~~ 198 (387)
+.+|.-..+|+.|.+++.. ..+..+..+|.++.|.++.+..-.+ ..... .-+.+.++++.+|....-....
T Consensus 113 I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~ 192 (418)
T KOG2982|consen 113 IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN 192 (418)
T ss_pred cccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH
Confidence 2445445688888888754 2335566677777777765421110 00000 1234555555555321110000
Q ss_pred C-CCCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCC
Q 043667 199 L-KPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGL 277 (387)
Q Consensus 199 ~-~~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l 277 (387)
. ..-++++.. +.+.+|+.-+.-......-+|.+.-|+++. .++.+...- ..+..+ +.|.-|++.+.+-+
T Consensus 193 ~l~r~Fpnv~s--v~v~e~PlK~~s~ek~se~~p~~~~LnL~~-~~idswasv---D~Ln~f----~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 193 KLSRIFPNVNS--VFVCEGPLKTESSEKGSEPFPSLSCLNLGA-NNIDSWASV---DALNGF----PQLVDLRVSENPLS 262 (418)
T ss_pred hHHhhcccchh--eeeecCcccchhhcccCCCCCcchhhhhcc-cccccHHHH---HHHcCC----chhheeeccCCccc
Confidence 0 223444444 555555322211111122345555555554 334432210 123333 77777777776644
Q ss_pred CCccc------ccCCCCCccEEEe
Q 043667 278 VKLPQ------SSLSLSSLREIDI 295 (387)
Q Consensus 278 ~~~~~------~~~~~~~L~~L~l 295 (387)
..+.. .+..+++++.|+=
T Consensus 263 d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 263 DPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred ccccCCcceEEEEeeccceEEecC
Confidence 43322 2345666666654
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.99 E-value=0.00086 Score=65.22 Aligned_cols=99 Identities=22% Similarity=0.368 Sum_probs=54.0
Q ss_pred CccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCCCcCCCceEEEeccCCCCCccccccccCCCCCcceEec
Q 043667 265 RLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEVALPSKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKI 344 (387)
Q Consensus 265 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l 344 (387)
.|.+.++++ +.++.+...++-++.|+.|++++ ++++.+......+.|++|++++ +.++.+|..-+.-.. |+.|.+
T Consensus 165 ~L~~a~fsy-N~L~~mD~SLqll~ale~LnLsh-Nk~~~v~~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~--L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSY-NRLVLMDESLQLLPALESLNLSH-NKFTKVDNLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK--LQLLNL 239 (1096)
T ss_pred hHhhhhcch-hhHHhHHHHHHHHHHhhhhccch-hhhhhhHHHHhccccccccccc-chhccccccchhhhh--heeeee
Confidence 444444432 44555555555566677777776 4555544322336777777766 446666642211223 777777
Q ss_pred ccCcccccccCCCCCCCccEEeecC
Q 043667 345 ERCRSLTYIAGVQLPPSLKRLDIWN 369 (387)
Q Consensus 345 ~~c~~l~~~~~~~~~~~L~~L~l~~ 369 (387)
++ +.++.+-....+.+|+-||++.
T Consensus 240 rn-N~l~tL~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 240 RN-NALTTLRGIENLKSLYGLDLSY 263 (1096)
T ss_pred cc-cHHHhhhhHHhhhhhhccchhH
Confidence 66 4565554334555666666654
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.83 E-value=0.014 Score=48.10 Aligned_cols=104 Identities=19% Similarity=0.188 Sum_probs=60.4
Q ss_pred cEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC-cCC-cCCCcEEEecCCCCceEeCccccCCCcccCCCCc
Q 043667 9 EQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS-VGQ-LPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPRL 86 (387)
Q Consensus 9 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-~~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L 86 (387)
..++++++.+..++. +. +++.|.+|.++++ +++.+.+ +.. +++|+.|.+.++ .+..++.- ..+..+|+|
T Consensus 45 d~iDLtdNdl~~l~~-lp--~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl----~pLa~~p~L 115 (233)
T KOG1644|consen 45 DAIDLTDNDLRKLDN-LP--HLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNN-SIQELGDL----DPLASCPKL 115 (233)
T ss_pred ceecccccchhhccc-CC--CccccceEEecCC-cceeeccchhhhccccceEEecCc-chhhhhhc----chhccCCcc
Confidence 345566665544432 11 2778888888874 6665554 444 677888888887 44443211 114567888
Q ss_pred ceeeccccCCccccccCcCCCCccCCCCcceEeeccC
Q 043667 87 ETLRFDAMLGWEDWIPLRSGQGVEGFPKLRELHILRC 123 (387)
Q Consensus 87 ~~L~l~~~~~l~~~~~~~~~~~i~~~~~L~~L~l~~~ 123 (387)
++|.+.+.+.-..-... ..-+-++|+|+.|++..-
T Consensus 116 ~~Ltll~Npv~~k~~YR--~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 116 EYLTLLGNPVEHKKNYR--LYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ceeeecCCchhcccCce--eEEEEecCcceEeehhhh
Confidence 88888776543322110 011226788888888654
No 60
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.73 E-value=0.0072 Score=28.60 Aligned_cols=17 Identities=35% Similarity=0.649 Sum_probs=8.8
Q ss_pred CCccEEeecCCccccccc
Q 043667 360 PSLKRLDIWNCDNIRTLT 377 (387)
Q Consensus 360 ~~L~~L~l~~C~~l~~l~ 377 (387)
++|++|++++|. ++++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 356777777766 66665
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.30 E-value=0.13 Score=39.79 Aligned_cols=102 Identities=17% Similarity=0.264 Sum_probs=41.6
Q ss_pred ccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCccc-ccCCCCCccEEEecCCCCceec
Q 043667 226 LLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ-SSLSLSSLREIDIYDCSSLVSF 304 (387)
Q Consensus 226 ~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~ 304 (387)
.+..+.+|+.+.+.. .+..+... .|... .+|+.+.+.+ .++.+.. .+..+++++.+.+.. .+..+
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~----~F~~~----~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i 72 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGEN----AFSNC----TSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSI 72 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TT----TTTT-----TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE
T ss_pred HHhCCCCCCEEEECC--CeeEeChh----hcccc----cccccccccc--cccccceeeeecccccccccccc--ccccc
Confidence 345555666666653 34444443 23322 4666666654 2444443 244555666666643 45555
Q ss_pred CCCCcC--CCceEEEeccCCCCCccccccccCCCCCcceEecc
Q 043667 305 PEVALP--SKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIE 345 (387)
Q Consensus 305 ~~~~~~--~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~ 345 (387)
+...+. ++++.+.+.. ++..++........ |+.+.+.
T Consensus 73 ~~~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~~--l~~i~~~ 111 (129)
T PF13306_consen 73 GDNAFSNCTNLKNIDIPS--NITEIGSSSFSNCN--LKEINIP 111 (129)
T ss_dssp -TTTTTT-TTECEEEETT--T-BEEHTTTTTT-T----EEE-T
T ss_pred ccccccccccccccccCc--cccEEchhhhcCCC--ceEEEEC
Confidence 554443 5666666643 25555443222223 5555544
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.19 E-value=0.013 Score=29.83 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=12.8
Q ss_pred CccEEeecCCccccccccc
Q 043667 361 SLKRLDIWNCDNIRTLTVE 379 (387)
Q Consensus 361 ~L~~L~l~~C~~l~~l~~~ 379 (387)
+|++||+++| +++.||.+
T Consensus 1 ~L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp TESEEEETSS-EESEEGTT
T ss_pred CccEEECCCC-cCEeCChh
Confidence 4677777777 67777755
No 63
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.81 E-value=0.0076 Score=49.67 Aligned_cols=65 Identities=15% Similarity=0.278 Sum_probs=45.4
Q ss_pred CCceEEEeccCCCCCccccccccCCCCCcceEecccCcccccccCC--CCCCCccEEeecCCccccc
Q 043667 311 SKLKKIEIRKCDALKSLPEAWMCDTNSSLETLKIERCRSLTYIAGV--QLPPSLKRLDIWNCDNIRT 375 (387)
Q Consensus 311 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~C~~l~~ 375 (387)
++++.|.+.+|..+.+..-.......|+|+.|+|++|+.||+.... ..+++|+.|.+++.+.+..
T Consensus 125 ~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 125 RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhc
Confidence 6788888888887766442111112355999999999999887655 4568888888888665543
No 64
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.68 E-value=0.0066 Score=50.04 Aligned_cols=65 Identities=26% Similarity=0.425 Sum_probs=31.5
Q ss_pred ccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcc-cccCCCCCccEEEecCCC
Q 043667 228 QDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLP-QSSLSLSSLREIDIYDCS 299 (387)
Q Consensus 228 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~ 299 (387)
..++.++.|.+.+|..+.+.. ++.+...+++|+.|+|+.|+.+++-- .++..+++|+.|.+.+.+
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~-------L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWC-------LERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred hccchhhhheeccccchhhHH-------HHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 344555555555555555432 22222234556666666555555432 234455555555554433
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.50 E-value=0.29 Score=37.71 Aligned_cols=108 Identities=19% Similarity=0.242 Sum_probs=51.6
Q ss_pred CCCccccceeEEEcCCCCcccccccccccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCc
Q 043667 201 PQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKL 280 (387)
Q Consensus 201 ~~l~~L~~l~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~ 280 (387)
..+++|+. +.+.. .+..++...+..+++|+.+.+.+ .+..++.. .+... ++++++.+.+ .+..+
T Consensus 9 ~~~~~l~~--i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~----~F~~~----~~l~~i~~~~--~~~~i 72 (129)
T PF13306_consen 9 YNCSNLES--ITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDN----AFSNC----KSLESITFPN--NLKSI 72 (129)
T ss_dssp TT-TT--E--EEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TT----TTTT-----TT-EEEEETS--TT-EE
T ss_pred hCCCCCCE--EEECC--CeeEeChhhcccccccccccccc--ccccccee----eeecc----cccccccccc--ccccc
Confidence 34445555 55543 34455555566777788888875 35655543 23333 5788888854 34444
Q ss_pred cc-ccCCCCCccEEEecCCCCceecCCCCcC-CCceEEEeccCCCCCccc
Q 043667 281 PQ-SSLSLSSLREIDIYDCSSLVSFPEVALP-SKLKKIEIRKCDALKSLP 328 (387)
Q Consensus 281 ~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~-~~L~~L~l~~c~~l~~l~ 328 (387)
+. .+..+++|+.+++.. +++.++...+. .+++.+.+.+ .+..++
T Consensus 73 ~~~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~~l~~i~~~~--~~~~i~ 118 (129)
T PF13306_consen 73 GDNAFSNCTNLKNIDIPS--NITEIGSSSFSNCNLKEINIPS--NITKIE 118 (129)
T ss_dssp -TTTTTT-TTECEEEETT--T-BEEHTTTTTT-T--EEE-TT--B-SS--
T ss_pred ccccccccccccccccCc--cccEEchhhhcCCCceEEEECC--CccEEC
Confidence 43 345678888888854 46677666655 5677776653 344444
No 66
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.51 E-value=0.031 Score=53.13 Aligned_cols=111 Identities=19% Similarity=0.258 Sum_probs=73.0
Q ss_pred cccCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCC
Q 043667 227 LQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPE 306 (387)
Q Consensus 227 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 306 (387)
+..+.+|+.+++.+ ..++.+.. .+..+ ++|+.|++++ +.++.+.. +..++.|+.|++.+ +.+..+..
T Consensus 91 l~~~~~l~~l~l~~-n~i~~i~~-----~l~~~----~~L~~L~ls~-N~I~~i~~-l~~l~~L~~L~l~~-N~i~~~~~ 157 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD-NKIEKIEN-----LLSSL----VNLQVLDLSF-NKITKLEG-LSTLTLLKELNLSG-NLISDISG 157 (414)
T ss_pred cccccceeeeeccc-cchhhccc-----chhhh----hcchheeccc-cccccccc-hhhccchhhheecc-CcchhccC
Confidence 34577888888887 45555432 03333 8888888887 45666653 55666788888887 67777775
Q ss_pred CCcCCCceEEEeccCCCCCccccc-cccCCCCCcceEecccCccccccc
Q 043667 307 VALPSKLKKIEIRKCDALKSLPEA-WMCDTNSSLETLKIERCRSLTYIA 354 (387)
Q Consensus 307 ~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~~~L~~L~l~~c~~l~~~~ 354 (387)
....++|+.++++++. +..+... ...+.. ++.+.+.+ +.+..+.
T Consensus 158 ~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~--l~~l~l~~-n~i~~i~ 202 (414)
T KOG0531|consen 158 LESLKSLKLLDLSYNR-IVDIENDELSELIS--LEELDLGG-NSIREIE 202 (414)
T ss_pred CccchhhhcccCCcch-hhhhhhhhhhhccc--hHHHhccC-Cchhccc
Confidence 5545788888888754 5555431 234556 88888887 3555444
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.31 E-value=0.064 Score=46.13 Aligned_cols=10 Identities=30% Similarity=0.182 Sum_probs=5.3
Q ss_pred CCccEEEecc
Q 043667 264 CRLEYLRLRY 273 (387)
Q Consensus 264 ~~L~~L~l~~ 273 (387)
|+|++|.++.
T Consensus 91 P~l~~l~ls~ 100 (260)
T KOG2739|consen 91 PNLKVLNLSG 100 (260)
T ss_pred CceeEEeecC
Confidence 5555555554
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.01 E-value=0.011 Score=51.19 Aligned_cols=103 Identities=19% Similarity=0.123 Sum_probs=52.2
Q ss_pred CcceEEEcCccceeEecccccCCCCcEEeccCCCCcccccCCCCCCCccccceeEEEcCCCCccccc-ccccccCCCccE
Q 043667 157 ALCKLKIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSH-DGLLQDICSLKK 235 (387)
Q Consensus 157 ~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~l~L~l~~~~~~~~~~-~~~l~~~~~L~~ 235 (387)
+.++|+..||.... ......++.|+.|.++- .++..+.. ...+++|++ +.++... +.++. ...+.++|+|+.
T Consensus 20 ~vkKLNcwg~~L~D-Isic~kMp~lEVLsLSv-NkIssL~p--l~rCtrLkE--lYLRkN~-I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD-ISICEKMPLLEVLSLSV-NKISSLAP--LQRCTRLKE--LYLRKNC-IESLDELEYLKNLPSLRT 92 (388)
T ss_pred HhhhhcccCCCccH-HHHHHhcccceeEEeec-cccccchh--HHHHHHHHH--HHHHhcc-cccHHHHHHHhcCchhhh
Confidence 34555555554322 22334456666666552 12222211 234555555 5444321 22111 112456788888
Q ss_pred EEecCCCCcccchhhHHHHHHhhhhhccCCccEEE
Q 043667 236 LTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLR 270 (387)
Q Consensus 236 L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~ 270 (387)
|.|..++..+..+..--...+..+ |+|++|+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~L----PnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVL----PNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHc----ccchhcc
Confidence 888877777665544333345555 8888876
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.78 E-value=0.0038 Score=53.99 Aligned_cols=79 Identities=19% Similarity=0.244 Sum_probs=46.0
Q ss_pred CCCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCCcCCcCCCcEEEecCCCCceEeCccccCCCcccCCCC
Q 043667 6 KNLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGKGAAIPFPR 85 (387)
Q Consensus 6 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 85 (387)
.+.+.|+.+|++...+. ++. .++.|++|.|+- +++..+.++..+++|++|.++.+ .+.++..-.| +..+|+
T Consensus 19 ~~vkKLNcwg~~L~DIs--ic~-kMp~lEVLsLSv-NkIssL~pl~rCtrLkElYLRkN-~I~sldEL~Y----Lknlps 89 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS--ICE-KMPLLEVLSLSV-NKISSLAPLQRCTRLKELYLRKN-CIESLDELEY----LKNLPS 89 (388)
T ss_pred HHhhhhcccCCCccHHH--HHH-hcccceeEEeec-cccccchhHHHHHHHHHHHHHhc-ccccHHHHHH----HhcCch
Confidence 34566666666654321 111 267777777777 36777777777777777777766 4554433222 334555
Q ss_pred cceeeccc
Q 043667 86 LETLRFDA 93 (387)
Q Consensus 86 L~~L~l~~ 93 (387)
|+.|-+..
T Consensus 90 Lr~LWL~E 97 (388)
T KOG2123|consen 90 LRTLWLDE 97 (388)
T ss_pred hhhHhhcc
Confidence 55555543
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.64 E-value=0.12 Score=44.55 Aligned_cols=104 Identities=26% Similarity=0.293 Sum_probs=63.2
Q ss_pred cCCccEEEeccCCCCCCcccccCCCCCccEEEecCCCCceecCCC---CcCCCceEEEeccCCCCCcccc--ccccCCCC
Q 043667 263 SCRLEYLRLRYCKGLVKLPQSSLSLSSLREIDIYDCSSLVSFPEV---ALPSKLKKIEIRKCDALKSLPE--AWMCDTNS 337 (387)
Q Consensus 263 ~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~c~~l~~l~~--~~~~~~~~ 337 (387)
+..|+.|++.++. ++.+. .+-.+|+|++|.++....-..+.-. ...|+|+++++++ +.++.+.. .+....+
T Consensus 42 ~~~le~ls~~n~g-ltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~l~n- 117 (260)
T KOG2739|consen 42 FVELELLSVINVG-LTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKELEN- 117 (260)
T ss_pred ccchhhhhhhccc-eeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccchhhhhcc-
Confidence 3677777777653 33222 2336789999999874221111111 1129999999998 44665431 1222444
Q ss_pred CcceEecccCcccccccCC-----CCCCCccEEeecCCcc
Q 043667 338 SLETLKIERCRSLTYIAGV-----QLPPSLKRLDIWNCDN 372 (387)
Q Consensus 338 ~L~~L~l~~c~~l~~~~~~-----~~~~~L~~L~l~~C~~ 372 (387)
|..|++.+|. .+.+... ...++|++||..++..
T Consensus 118 -L~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 118 -LKSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred -hhhhhcccCC-ccccccHHHHHHHHhhhhccccccccCC
Confidence 8999999984 3333322 3568999999887665
No 71
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=90.82 E-value=0.0075 Score=46.59 Aligned_cols=85 Identities=18% Similarity=0.296 Sum_probs=51.0
Q ss_pred CCccEEEeccCCCCCCccccc-CCCCCccEEEecCCCCceecCCCCcC--CCceEEEeccCCCCCccccccccCCCCCcc
Q 043667 264 CRLEYLRLRYCKGLVKLPQSS-LSLSSLREIDIYDCSSLVSFPEVALP--SKLKKIEIRKCDALKSLPEAWMCDTNSSLE 340 (387)
Q Consensus 264 ~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~~~~~~~~~L~ 340 (387)
..|++.++++ +.+.++|+.+ ..++.++.+++.+ +.+.++|++ +. +.|+.|++..++ +...|..+..+.+ +.
T Consensus 53 ~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE-~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~--l~ 126 (177)
T KOG4579|consen 53 YELTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEE-LAAMPALRSLNLRFNP-LNAEPRVIAPLIK--LD 126 (177)
T ss_pred ceEEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHH-HhhhHHhhhcccccCc-cccchHHHHHHHh--HH
Confidence 4566667776 4566777644 3556777788876 677777765 33 778888887643 5555554433444 55
Q ss_pred eEecccCcccccccC
Q 043667 341 TLKIERCRSLTYIAG 355 (387)
Q Consensus 341 ~L~l~~c~~l~~~~~ 355 (387)
.|+..+ .....++.
T Consensus 127 ~Lds~~-na~~eid~ 140 (177)
T KOG4579|consen 127 MLDSPE-NARAEIDV 140 (177)
T ss_pred HhcCCC-CccccCcH
Confidence 555555 34444443
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=88.83 E-value=0.7 Score=40.33 Aligned_cols=140 Identities=15% Similarity=0.166 Sum_probs=73.9
Q ss_pred CCCCccccceeEEEcCCCCccccccc---ccccCCCccEEEecCCCCcccchhhHHHHHHhhh-----hhccCCccEEEe
Q 043667 200 KPQLPKLEELILSTKEQTYIWKSHDG---LLQDICSLKKLTIDWCPKLQSLVAEEEKDQQQQL-----CELSCRLEYLRL 271 (387)
Q Consensus 200 ~~~l~~L~~l~L~l~~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l-----~~~~~~L~~L~l 271 (387)
.-.+++|++ +.+++...-..+|.. .+++-..|.+|.+++| .++.+.......++..+ ...-|.|++...
T Consensus 88 Llkcp~l~~--v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 88 LLKCPRLQK--VDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HhcCCccee--eeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 345677777 888776654444432 3455677888888875 44444333222112111 113367777766
Q ss_pred ccCCCCCCccc-----ccCCCCCccEEEecCCCCceecCC-----CCcC--CCceEEEeccCCCCCc-----cccccccC
Q 043667 272 RYCKGLVKLPQ-----SSLSLSSLREIDIYDCSSLVSFPE-----VALP--SKLKKIEIRKCDALKS-----LPEAWMCD 334 (387)
Q Consensus 272 ~~c~~l~~~~~-----~~~~~~~L~~L~l~~c~~l~~~~~-----~~~~--~~L~~L~l~~c~~l~~-----l~~~~~~~ 334 (387)
..+ .+..-+. .+.+-.+|+.+.+.. +.|..-.. .+.. .+|+.|++..+. ++. +...+..+
T Consensus 165 grN-Rlengs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W 241 (388)
T COG5238 165 GRN-RLENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEW 241 (388)
T ss_pred ccc-hhccCcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhccc
Confidence 553 3443332 233446777777776 44432111 1111 678888887643 221 22222223
Q ss_pred CCCCcceEecccC
Q 043667 335 TNSSLETLKIERC 347 (387)
Q Consensus 335 ~~~~L~~L~l~~c 347 (387)
.. |+.|.+.+|
T Consensus 242 ~~--lrEL~lnDC 252 (388)
T COG5238 242 NL--LRELRLNDC 252 (388)
T ss_pred ch--hhhccccch
Confidence 44 788888887
No 73
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=88.41 E-value=0.29 Score=25.90 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=9.6
Q ss_pred cceEecccCcccccc
Q 043667 339 LETLKIERCRSLTYI 353 (387)
Q Consensus 339 L~~L~l~~c~~l~~~ 353 (387)
|++|++++|+++++.
T Consensus 4 L~~L~l~~C~~itD~ 18 (26)
T smart00367 4 LRELDLSGCTNITDE 18 (26)
T ss_pred CCEeCCCCCCCcCHH
Confidence 666666666666653
No 74
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=87.81 E-value=0.17 Score=43.95 Aligned_cols=40 Identities=8% Similarity=0.018 Sum_probs=21.9
Q ss_pred ccccCCCCcceEEEcCcccee-Ee----cccccCCCCcEEeccCC
Q 043667 150 VSVSSLPALCKLKIGGCKKVV-WR----SATDHLGSQNSVVCRDT 189 (387)
Q Consensus 150 ~~~~~~~~L~~L~i~~~~~~~-~~----~~~~~~~~L~~L~l~~~ 189 (387)
..+.+||+|+.++++++..-. .+ ..+.+.++|++|.+++|
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 345566777777776643221 11 22344566777776655
No 75
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=86.88 E-value=0.052 Score=42.11 Aligned_cols=56 Identities=23% Similarity=0.353 Sum_probs=29.3
Q ss_pred CCcEEEEcCcCCCCCCCccCCccCCCccEEEeecCCCCCCCCC-cCCcCCCcEEEecCC
Q 043667 7 NLEQFCISGYRGAKFPTWFGDSSFSNLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGM 64 (387)
Q Consensus 7 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~c~~~~~l~~-~~~l~~L~~L~l~~~ 64 (387)
+|...+++++....+|..+.. .|+-+.+|++.+ +.+.++|. ++.++.|+.|+++.+
T Consensus 54 el~~i~ls~N~fk~fp~kft~-kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTI-KFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFN 110 (177)
T ss_pred eEEEEecccchhhhCCHHHhh-ccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccC
Confidence 344445555555555554442 244555555555 25555553 555555555555555
No 76
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=81.87 E-value=0.86 Score=24.13 Aligned_cols=18 Identities=39% Similarity=0.674 Sum_probs=14.0
Q ss_pred CCccEEeecCCcccccccc
Q 043667 360 PSLKRLDIWNCDNIRTLTV 378 (387)
Q Consensus 360 ~~L~~L~l~~C~~l~~l~~ 378 (387)
++|++|++++ ++|+++|.
T Consensus 2 ~~L~~L~vs~-N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSN-NQLTSLPE 19 (26)
T ss_pred cccceeecCC-CccccCcc
Confidence 5678888887 77888884
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=79.46 E-value=1.3 Score=23.29 Aligned_cols=19 Identities=32% Similarity=0.634 Sum_probs=12.0
Q ss_pred CCccEEeecCCccccccccc
Q 043667 360 PSLKRLDIWNCDNIRTLTVE 379 (387)
Q Consensus 360 ~~L~~L~l~~C~~l~~l~~~ 379 (387)
++|++|++++ ++++++|.+
T Consensus 2 ~~L~~L~L~~-N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSN-NQLSSLPPG 20 (26)
T ss_pred CCCCEEECCC-CcCCcCCHH
Confidence 4567777776 466777643
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=79.46 E-value=1.3 Score=23.29 Aligned_cols=19 Identities=32% Similarity=0.634 Sum_probs=12.0
Q ss_pred CCccEEeecCCccccccccc
Q 043667 360 PSLKRLDIWNCDNIRTLTVE 379 (387)
Q Consensus 360 ~~L~~L~l~~C~~l~~l~~~ 379 (387)
++|++|++++ ++++++|.+
T Consensus 2 ~~L~~L~L~~-N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSN-NQLSSLPPG 20 (26)
T ss_pred CCCCEEECCC-CcCCcCCHH
Confidence 4567777776 466777643
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=48.10 E-value=13 Score=18.80 Aligned_cols=12 Identities=42% Similarity=0.683 Sum_probs=7.2
Q ss_pred CCccEEeecCCc
Q 043667 360 PSLKRLDIWNCD 371 (387)
Q Consensus 360 ~~L~~L~l~~C~ 371 (387)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 567788888765
No 80
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=45.14 E-value=45 Score=20.02 Aligned_cols=11 Identities=36% Similarity=0.758 Sum_probs=5.0
Q ss_pred CcCCCceEEEe
Q 043667 308 ALPSKLKKIEI 318 (387)
Q Consensus 308 ~~~~~L~~L~l 318 (387)
.+|++|++|.+
T Consensus 31 ~lP~sl~~L~f 41 (44)
T PF05725_consen 31 SLPNSLKSLSF 41 (44)
T ss_pred ccCCCceEEEe
Confidence 34444444444
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.71 E-value=25 Score=34.17 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=17.2
Q ss_pred cCCccEEEeccCC--CCCCcccccCCCCCccEEEecC
Q 043667 263 SCRLEYLRLRYCK--GLVKLPQSSLSLSSLREIDIYD 297 (387)
Q Consensus 263 ~~~L~~L~l~~c~--~l~~~~~~~~~~~~L~~L~l~~ 297 (387)
+|.+.++.++++. .+..+....+..|+|..|++++
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~ 253 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSH 253 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeeccc
Confidence 3666666666532 1222332333455666666655
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=28.98 E-value=41 Score=17.76 Aligned_cols=12 Identities=33% Similarity=0.354 Sum_probs=5.6
Q ss_pred CCcEEEEcCcCC
Q 043667 7 NLEQFCISGYRG 18 (387)
Q Consensus 7 ~L~~L~l~~~~~ 18 (387)
+|++|++++|.+
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 444444444444
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=27.25 E-value=42 Score=32.74 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=35.4
Q ss_pred cCCCccEEEecCCCCcccchhhHHHHHHhhhhhccCCccEEEeccCCCCCCcccccC--CCCCccEEEecCCCCcee
Q 043667 229 DICSLKKLTIDWCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSL--SLSSLREIDIYDCSSLVS 303 (387)
Q Consensus 229 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~--~~~~L~~L~l~~c~~l~~ 303 (387)
+.+.+..+.+++ +++..+. .+..+....|+|+.|+|+++.....-..++. ....|++|.+.+++-.+.
T Consensus 216 n~p~i~sl~lsn-NrL~~Ld------~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSN-NRLYHLD------ALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeeccc-chhhchh------hhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 456677777766 3444432 2444444567888888877532221111121 223467777777443333
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=23.93 E-value=58 Score=17.29 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=5.4
Q ss_pred CCcEEEEcCcC
Q 043667 7 NLEQFCISGYR 17 (387)
Q Consensus 7 ~L~~L~l~~~~ 17 (387)
+|++|++++|.
T Consensus 3 ~L~~LdL~~N~ 13 (28)
T smart00368 3 SLRELDLSNNK 13 (28)
T ss_pred ccCEEECCCCC
Confidence 45555555444
Done!